BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] (282 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040280|gb|ACT57076.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 282 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 282/282 (100%), Positives = 282/282 (100%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA Sbjct: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP Sbjct: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA Sbjct: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL Sbjct: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK Sbjct: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 >gi|315121804|ref|YP_004062293.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495206|gb|ADR51805.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 300 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 222/286 (77%), Positives = 251/286 (87%), Gaps = 4/286 (1%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQK----SRHTSQPENLFLYGVHT 56 M L+ K+ KI S KDSHYAKLRRN+RD KK+Q NQK ++H +Q NLFLYG+HT Sbjct: 15 MKLMPPNKNNKISSPKDSHYAKLRRNYRDRKKIQLINQKDTLQNKHITQANNLFLYGIHT 74 Query: 57 VSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 V AALNNP RKIFQLLAT+N+L RL+WDAN PHPFPVK V P TID+IVGKEAVHQGLAL Sbjct: 75 VGAALNNPQRKIFQLLATRNSLTRLNWDANRPHPFPVKIVSPSTIDQIVGKEAVHQGLAL 134 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 ET PL SPTLD ++NSQL+++LDH+NDPHN+GAILRS+VAF C GIITT+RYSPSESAVL Sbjct: 135 ETTPLSSPTLDTIQNSQLIIILDHINDPHNVGAILRSSVAFGCGGIITTRRYSPSESAVL 194 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 AKSASGALEHIPYIRI NLTDAL K+H+W FQTIGLSS+S PLE+EIK+DKIALILGAE Sbjct: 195 AKSASGALEHIPYIRIGNLTDALHKIHAWQFQTIGLSSESNNPLEKEIKSDKIALILGAE 254 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 GKGLR KTQETATS+AHL+MPGIIK+LNVSNAAAVALYITQNHFAK Sbjct: 255 GKGLRQKTQETATSIAHLNMPGIIKSLNVSNAAAVALYITQNHFAK 300 >gi|302389955|ref|YP_003825776.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter oceani DSM 16646] gi|302200583|gb|ADL08153.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter oceani DSM 16646] Length = 265 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 106/257 (41%), Gaps = 2/257 (0%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 + R K +++ Q + + + G+ ALN+ + L+ + + L R Sbjct: 6 PSKRQIKMIRALAQLKNYRKRHGLFLVEGLRATEEALNSDY-LVEFLVVSDDFLERHREK 64 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 V VP + D + EA G+ ++ L++ LD + DP Sbjct: 65 IKEYENIKVYEVPRKVYDTLSDTEAPQ-GIMAVVRMKNHELTSIYEDNFLIVALDGIKDP 123 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIG I+R+A A GI+ K + + +S G++ H+P I +L L ++ Sbjct: 124 GNIGTIIRTADAAGASGILAGKGCVDIYNPKVVRSTMGSIFHLPVIEGVDLPVVLHELSQ 183 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + ++K + L+ G+E +G+ P+ + +T + + MPG ++LN Sbjct: 184 KRAKIVVTHLGAEKSYFDADLTGPVVLVFGSEAEGVSPEILKISTEVVKIPMPGKAESLN 243 Query: 265 VSNAAAVALYITQNHFA 281 V+ A + L+ Sbjct: 244 VAVAGGIVLFEAVRQRN 260 >gi|256005539|ref|ZP_05430500.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 2360] gi|255990519|gb|EEU00640.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 2360] gi|316940069|gb|ADU74103.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 1313] Length = 267 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 56/281 (19%), Positives = 113/281 (40%), Gaps = 23/281 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN I+ ++ I +K ++ ++ + + F+ G+ V A Sbjct: 1 MNYITSAQNPIIKEVKSL-------------------KQKKYREEKKLFFIEGIRFVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L + L++ K A ++ +PV +P + +I + QG+ Sbjct: 42 LKEGVQIERILVSDKLAETNSGYEILKKVSNGGYPVFQLPHKLFMEISDTQ-NPQGILAV 100 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + D ++LD V DP N+G I+R+A A G+I +K + + Sbjct: 101 LSMKNCDIEDVWDEKNFFVILDSVQDPGNMGTIIRTADAAGMTGVIVSKGCVDVYNPKVL 160 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S G++ HIP + ++ + + +M G + + + IA+++G E Sbjct: 161 RSTMGSIFHIPICQSQDIFETMDRMKKRGIKICAAHLEGSCDYFDLEYKNNIAIVIGNEA 220 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 G+ + + A + + MPG ++LN S AA + +Y Sbjct: 221 NGISEEVKNFADILVRIPMPGRAESLNASVAAGILMYEILR 261 >gi|125973737|ref|YP_001037647.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405] gi|281417893|ref|ZP_06248913.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum JW20] gi|125713962|gb|ABN52454.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum ATCC 27405] gi|281409295|gb|EFB39553.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum JW20] Length = 267 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 56/281 (19%), Positives = 113/281 (40%), Gaps = 23/281 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN I+ ++ I +K ++ ++ + + F+ G+ V A Sbjct: 1 MNYITSAQNPIIKEVKSL-------------------KQKKYREEKKLFFIEGIRFVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L + L++ K A ++ +PV +P + +I + QG+ Sbjct: 42 LKEGVQIERILVSDKLAETNSGYEILKKVSNGGYPVFQLPHKLFMEISDTQ-NPQGILAV 100 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + D ++LD V DP N+G I+R+A A G+I +K + + Sbjct: 101 LSMKNCDIEDVWDEKNFFVILDSVQDPGNMGTIIRTADAAGMTGVIVSKGCVDVYNPKVL 160 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S G++ HIP + ++ + + +M G + + + IA+++G E Sbjct: 161 RSTMGSIFHIPICQSQDIFETMDRMKKRGIKICAAHLEGSCDYFDLEYKNNIAIVIGNEA 220 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 G+ + + A + + MPG ++LN S AA + +Y Sbjct: 221 NGISEEVKNFADILVRIPMPGRAESLNASVAAGILMYEILR 261 >gi|255281427|ref|ZP_05345982.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM 14469] gi|255267915|gb|EET61120.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM 14469] Length = 260 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 102/256 (39%), Gaps = 4/256 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ K + K++ + GV P + + +++ + + Sbjct: 6 SNKQIKNLVQLLTKAKARREQGLFVAEGVRMYRE---TPKDDLVKTYVSESFYEKE-ENR 61 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 L ++ V + + L L +P + LL++L+ + DP Sbjct: 62 ALLQGTELEIVTDRVFASTSDTKTPQGILCLVRQREYTPAQMLRAENPLLLLLEDIQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I R+A A GII + + + +S G++ +P++ ++ +K+ + Sbjct: 122 NLGTIFRAAEAAGATGIIMSSGTADIYNPKTIRSTMGSIYRMPFLYTKDIAAMQEKLKAR 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G +T ++ A ++G EG+GL E A + + M G +++LN Sbjct: 182 GIRTYAAHLKGSCTYTEQAYRKGCAFLIGNEGRGLSDALAEKADARIKIPMSGEVESLNA 241 Query: 266 SNAAAVALYITQNHFA 281 + +AA+ ++ + + Sbjct: 242 AVSAAILMFEAKRQRS 257 >gi|121534244|ref|ZP_01666069.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans Nor1] gi|121307347|gb|EAX48264.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans Nor1] Length = 270 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 60/260 (23%), Positives = 105/260 (40%), Gaps = 4/260 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LAR 80 N++ KK+ S QK ++ + + G+ V A + R K A + Sbjct: 7 SSNNQVIKKVASLKQK-KYRDEYNLFVVEGIRLVEEAAGSTWRPAMCFYTEKAAAAPRVQ 65 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 + + V KI E L + + + +L++VLD+ Sbjct: 66 ATLEILAAKGCRIFPVADNVYAKITDTEQPQGILCVMEKKRYTFDDLQSSDRELIVVLDN 125 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G ++R+A A C G+I TK + S ++ G+L H+P I + Sbjct: 126 VQDPGNVGTVVRTADAAGCCGVILTKGCADLFSGKTVRATMGSLFHLPVITGVAEQEVAA 185 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + G + + + DS +A++ G EG G+ E A ++ + G Sbjct: 186 FLERQGIRLLATALDSSSLYHDVDLRSPVAIVFGNEGAGVSKVILEKADERLYIPLYGRA 245 Query: 261 KALNVSNAAAVALYITQNHF 280 ++LNV+ AAAV LY + Sbjct: 246 ESLNVAVAAAVILYEARRQR 265 >gi|153853513|ref|ZP_01994893.1| hypothetical protein DORLON_00882 [Dorea longicatena DSM 13814] gi|149753668|gb|EDM63599.1| hypothetical protein DORLON_00882 [Dorea longicatena DSM 13814] Length = 263 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 102/260 (39%), Gaps = 6/260 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--- 82 ++ K++ + +K + + + G+ P K+ ++ +++ + Sbjct: 6 SNARIKRLVNLKKKRKLRDEESVFLVEGIRMFREV---PLDKLKEVYVSESFYKKEKDTV 62 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + V+ + + L + L+MVLDH+ Sbjct: 63 KEVLKDSKVRVEELTDTVFAHASDTKTPQGILCVVEQMNHEINELTSAKCPLIMVLDHLQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ILR+A GI+ + + +S G++ +P++ + +L +Q + Sbjct: 123 DPGNLGTILRTAEGAGVTGILMDRECVDVYNPKTIRSTMGSIYRMPFVYVEDLGKGIQDL 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G T + ++E + A ++G EG GLR + + A + M G +++ Sbjct: 183 KDKGITTYAAHLEGTNSYDEEDLTNPCAFLIGNEGNGLRREIADMADCYVKIPMLGQVES 242 Query: 263 LNVSNAAAVALYITQNHFAK 282 LN + A++V ++ K Sbjct: 243 LNAAIASSVLMFEAARQRRK 262 >gi|300857265|ref|YP_003782249.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528] gi|300437380|gb|ADK17147.1| predicted rRNA methylase [Clostridium ljungdahlii DSM 13528] Length = 266 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 114/264 (43%), Gaps = 15/264 (5%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDA 85 YKK + K+ + G + V AL + + I Q+ + + + Sbjct: 4 KYKKSTNLTDKTEFR----EDLIEGRNAVIEALKSSNTTIEQIFLAEGNMSGSINIILAK 59 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVL 138 VK V + +DKI + HQG+ + P ++ + + + ++VL Sbjct: 60 AKEKHIVVKQVDRKKLDKIS-QTGAHQGVIAQITPYKYCEVEDILEYAREKKEAPFIIVL 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DPHN GAI+R+A GII KR + + V+ KS+ GA E++ +++NL Sbjct: 119 DEIEDPHNFGAIIRTAEICGAHGIIIPKRRNVGITPVVYKSSVGAAEYMKICKVTNLNTT 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++K+ G G + ALI+G+EG+G+ T+E + + M G Sbjct: 179 IEKLKKDGIWVYGADMSGENYCFDVDFKGPAALIIGSEGRGIAKLTKEKCDVLVKIPMVG 238 Query: 259 IIKALNVSNAAAVALYITQNHFAK 282 + +LN S A + +Y K Sbjct: 239 RVSSLNASVAGGILMYEILKQRIK 262 >gi|114704462|ref|ZP_01437370.1| putative trna/rrna methyltransferase protein [Fulvimarina pelagi HTCC2506] gi|114539247|gb|EAU42367.1| putative trna/rrna methyltransferase protein [Fulvimarina pelagi HTCC2506] Length = 310 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 142/265 (53%), Positives = 184/265 (69%), Gaps = 8/265 (3%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 +D+HYA LRR HRD K+ N PE L LYG+HTV+AAL NP R +LL T+ Sbjct: 50 RDTHYANLRRAHRDRKRELKPN-------APEPLLLYGLHTVAAALQNPDRIRHRLLITR 102 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 NA ARL+ D + P++ V P+ +D+++G EAVHQG LET PL LDA+ ++ LL Sbjct: 103 NARARLELD-DAEIDCPIEQVEPKDLDRLLGGEAVHQGACLETEPLEPLRLDALGDATLL 161 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD V DPHN+GAILRSA AF+ DG+ITT R+SP ES VLAK+ASGALEH+ I + NL Sbjct: 162 LVLDQVTDPHNVGAILRSATAFAADGLITTSRHSPRESGVLAKAASGALEHVRQIEVRNL 221 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + L+++ GF+TIGL S+ + EQ I+ +KIA++LGAEGKGLR KT+ T +A L Sbjct: 222 AETLERLSKLGFRTIGLDSEGESDFEQAIEGEKIAVVLGAEGKGLRQKTRATCDVLARLE 281 Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280 MPG I +LNVSNAAAVALY + Sbjct: 282 MPGAIHSLNVSNAAAVALYAIRRRL 306 >gi|295399475|ref|ZP_06809457.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius C56-YS93] gi|312109966|ref|YP_003988282.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1] gi|294978941|gb|EFG54537.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius C56-YS93] gi|311215067|gb|ADP73671.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1] Length = 256 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 65/277 (23%), Positives = 112/277 (40%), Gaps = 27/277 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ ++ K + + + G H V A Sbjct: 1 MKRIESVKNPQVKQWKKLLMK-------------------KERDKTGLFLIEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + I QL+ +N WD + PV V + I E QG+A Sbjct: 42 LKSNI-SIIQLIVKENKAIPATWDIS---GIPVAIVTEDVMKAISDTE-TPQGIAAVCEQ 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L +D R + LL+ D V DP NIG ++R+A A D +I K + + + ++ Sbjct: 97 FLYGDIDWTRANVLLI--DAVQDPGNIGTMIRTADAAGIDAVILGKGCADLYNPKVIRAT 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+L H+P IR + + ++K+ G S ++ + AL++G EG G+ Sbjct: 155 QGSLFHLPIIRGNLR-EWIEKLQEQNVPIYGTSLENGEDYRCINPPRPFALLVGNEGSGV 213 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + T ++ + G ++LNV+ AA + LY + Sbjct: 214 HKELLQMTTKNLYIPIYGQAESLNVAVAAGILLYHLR 250 >gi|210610310|ref|ZP_03288339.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787] gi|210152540|gb|EEA83546.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787] Length = 257 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 104/255 (40%), Gaps = 4/255 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K + +KS+ ++ + + G+ P ++ ++ +++ + + Sbjct: 6 SNPQVKNLLQLQKKSKVRNEEQVFIVEGLRMFMEV---PQDQVKKVYVSESLYNKKKEEL 62 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 +L FPV+ + + + + L + + + +VLD++ DP Sbjct: 63 HLER-FPVEVLADKVFQHVSDTKTPQGILCVVKQRKYEIEDLISKENPHFIVLDNLQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A + + + +S G++ +P++ + +L L K Sbjct: 122 NLGTIVRTAEGAGVTAVFMSNDCVDIYNPKTIRSTMGSIYRVPFVYVDDLLALLDKFQKK 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 T K ++E A+++G EG GLR + E A + M G +++LN Sbjct: 182 KVTTYAAHLKGKNTYDKENYQSGTAILIGNEGNGLRDEVAEKADVWVQIPMQGKVESLNA 241 Query: 266 SNAAAVALYITQNHF 280 + AA++ ++ Sbjct: 242 AIAASILMFEVYRQR 256 >gi|86609412|ref|YP_478174.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557954|gb|ABD02911.1| RNA methyltransferase, TrmH family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 270 Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 94/258 (36%), Gaps = 4/258 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + +K++ + +S+ + + G H + AL A Sbjct: 8 SPKNPWIRKLRQLH-RSKGRREQGAFLVEGSHLIEEALRVGWPLQALCYTPDWASRHPHL 66 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 A+LP + V + + + E+ +A+ + +S + +L +V++ + D Sbjct: 67 LADLPKGLRRQPVSSEVMAALCTTESPEGAVAVAVSWQISSP--PLSKLRLGLVVETLQD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKM 202 P N+G+++R A DG+ + E+ + ++++G P + + Sbjct: 125 PGNLGSLIRVVAAAGADGLWLSADSVDPENPKVLRASAGQWFRRPPQVVPDLAAWIQSCR 184 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 S + + +LG EG GLR T + A + + M +++ Sbjct: 185 CHGIQVLAATLSPTANCYWDQDLTRPTLFLLGNEGAGLREATIQQADAQVRIPMAEGVES 244 Query: 263 LNVSNAAAVALYITQNHF 280 LNV+ + LY Sbjct: 245 LNVAMTGGLLLYEALRQR 262 >gi|323141055|ref|ZP_08075960.1| putative RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium sp. YIT 12067] gi|322414431|gb|EFY05245.1| putative RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium sp. YIT 12067] Length = 261 Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 104/257 (40%), Gaps = 2/257 (0%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K QK ++ Q G+ TV A+ + + A ++ R + Sbjct: 7 QNPMVKAAAELKQK-KYRQQQGLFLAEGLRTVEEAVRYGAVQSIFYTAIEDDRTRAVLEE 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + V + + KI E QG+ + + + ++L+VLD V DP Sbjct: 66 AAAKQIKLVCVSDKVLKKIADTE-TPQGIIAVCEMRSKRLDEFLASGKMLLVLDRVTDPG 124 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIG +LR+A A G++ + + + +++ G+L H+P + + +Q Sbjct: 125 NIGTMLRTADAAGVGGLLLLQGCADIYAPKTVRASMGSLFHLPVLSGLSEELLVQAARKA 184 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G++ + D L + ++A ++G E G+ P A + M G ++LNV Sbjct: 185 GYELLVTCLDGADNLYKADLQGRLAFVMGNEANGVSPALLAAADKRVFIPMQGRAESLNV 244 Query: 266 SNAAAVALYITQNHFAK 282 + AA + ++ K Sbjct: 245 AMAAGIVMFEALRQKLK 261 >gi|15896402|ref|NP_349751.1| rRNA methylase [Clostridium acetobutylicum ATCC 824] gi|15026220|gb|AAK81091.1|AE007810_10 RRNA methylase, YACO B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] gi|325510559|gb|ADZ22195.1| RRNA methylase [Clostridium acetobutylicum EA 2018] Length = 252 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 60/247 (24%), Positives = 115/247 (46%), Gaps = 10/247 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTI 101 ++ + G + V AL + S L+++ + ++ PVK V + + Sbjct: 3 NKEREDLIEGRNAVIEALKSDSTIEQVLVSSGKSEGSINVILAKAKEKGIPVKYVDRKKL 62 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154 DKI VHQG+ + P +D + ++VLD + DPHN+G+I+R+A Sbjct: 63 DKIS-NGGVHQGVIAISTPYNYCDVDDIILNAKEKNEDPFILVLDEIEDPHNLGSIIRTA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 GII KR + + + K+++GA++++ ++SN+ A+ K+ G G Sbjct: 122 ELCGVHGIIIPKRRNVGVTPTVYKTSAGAVKYVKIAKVSNINLAIDKLKKEGIWVYGAEI 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D + + +AL++G+EG+G+ T++ + + M G + +LN S AA + +Y Sbjct: 182 DGENYCYNQNMTGALALVIGSEGRGISKLTKQKCDVLVKIPMVGKVNSLNASVAAGIVMY 241 Query: 275 ITQNHFA 281 Sbjct: 242 EILKQRI 248 >gi|222148346|ref|YP_002549303.1| tRNA/rRNA metyltransferase [Agrobacterium vitis S4] gi|221735334|gb|ACM36297.1| tRNA/rRNA metyltransferase [Agrobacterium vitis S4] Length = 293 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 148/288 (51%), Positives = 193/288 (67%), Gaps = 14/288 (4%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQS--FNQKSRHTSQPE-----------NLFLY 52 K + S +DSHYA LRR RD K+ + + + + +FLY Sbjct: 2 SKDNPNDTSDRDSHYATLRRQVRDAKRERGEIPTPQPQKRRKSNADWTPPPIAPDQVFLY 61 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+HTV AALNNP RK +L T+NAL RL+ PFPV+ V PQ +DK +G EA+HQ Sbjct: 62 GLHTVRAALNNPERKPIKLSLTQNALVRLEIGPVDALPFPVEIVTPQDLDKHLGPEAIHQ 121 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G+ LET PL L+A++ S LL+VLD V DPHN+GAI+R+AVAF +ITT R+SP+E Sbjct: 122 GVMLETRPLPPRRLEALKESPLLLVLDQVTDPHNVGAIMRTAVAFGAGAVITTMRHSPTE 181 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 S VLAKSASGALE IPYI+I+NL +AL ++H GF +IGL S+ +PLE+ DK+AL+ Sbjct: 182 SGVLAKSASGALELIPYIQITNLAEALGELHKLGFVSIGLDSEGPRPLEETFSGDKLALV 241 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 LG+EGKGLR KT++T ++A L MPG IK+LNVSNAAA+ALY F Sbjct: 242 LGSEGKGLRQKTRDTVNALARLDMPGEIKSLNVSNAAAIALY-ASRQF 288 >gi|163759379|ref|ZP_02166465.1| RNA methyltransferase, TrmH family, group 3 [Hoeflea phototrophica DFL-43] gi|162283783|gb|EDQ34068.1| RNA methyltransferase, TrmH family, group 3 [Hoeflea phototrophica DFL-43] Length = 300 Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 135/285 (47%), Positives = 191/285 (67%), Gaps = 16/285 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQS----FNQKSRH------------TSQPENLFLYGVHTV 57 S +D+HYAKLRR+HRD K+ + + + E+++LYG+HTV Sbjct: 12 SNRDTHYAKLRRSHRDAKREREGLPPVQPRGKRDLPARKGALYAERGAAESVYLYGLHTV 71 Query: 58 SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 AAL+NP+R+I L AT+NAL RL+ + PFPV+ V PQ ID+++G +AVHQG+ LE Sbjct: 72 RAALDNPARQITSLKATRNALMRLEIAEDAELPFPVELVAPQEIDRLLGDDAVHQGVLLE 131 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 PL + L + ++ L+++LD V DPHN+GAI+RSAVAF ++TT+R+SP ES VLA Sbjct: 132 ARPLSARPLTDLGDATLVVILDQVTDPHNVGAIMRSAVAFGAGALVTTQRHSPQESGVLA 191 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+ASGALE I +I + NL A++ + + GF T+GL S+ P+E +K +IA++LGAEG Sbjct: 192 KAASGALEMIDHIEVRNLASAIEDIKAQGFTTVGLDSEGPSPIEAGLKGARIAMVLGAEG 251 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 KGLR KT+ET + L MPG IK+LNVSNA A+ALY Q + + Sbjct: 252 KGLRQKTRETVDVLTRLDMPGAIKSLNVSNATAIALYAAQQYLNR 296 >gi|302876553|ref|YP_003845186.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulovorans 743B] gi|307687225|ref|ZP_07629671.1| RNA methyltransferase [Clostridium cellulovorans 743B] gi|302579410|gb|ADL53422.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulovorans 743B] Length = 309 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 121/297 (40%), Gaps = 27/297 (9%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL-------------FLYGVH 55 +++ K Y K + K + + +P++ + G + Sbjct: 17 KDQVKGKKKDFYQK---ENIKGKVDRKLEVRRNEERKPKDFETVKFESQVVREDIIEGRN 73 Query: 56 TVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 V AL + S I Q+L K + VK V + +D++ + VHQ Sbjct: 74 AVIEALKSSSTTIEQILVAKGDTTGSINVVLAEAREKRLVVKEVDRKKLDEMS-QTGVHQ 132 Query: 113 GLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 G+ P ++ + +++LD + DPHN+GAILR+A G++ Sbjct: 133 GVIAIVTPYKYCEVEDILEYAQKKGEDPFIIILDEIEDPHNLGAILRTAEVCGVHGVVIP 192 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 KR + + + K+++GA++++ ++ N+ + + G G D K + Sbjct: 193 KRRNVGITPTVYKTSAGAVQYMKVAKVPNINSVIDSLKKKGIWIYGADMDGKVYCQDANF 252 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ALI+G+EG+G+ T+E + + M G I +LN S A + +Y K Sbjct: 253 RGAAALIIGSEGRGISKLTKEKCDLLVKIPMVGQITSLNASVAGGILMYEILTQRMK 309 >gi|163785954|ref|ZP_02180402.1| putative rRNA methylase [Flavobacteriales bacterium ALC-1] gi|159877814|gb|EDP71870.1| putative rRNA methylase [Flavobacteriales bacterium ALC-1] Length = 265 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 101/258 (39%), Gaps = 3/258 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + K++ +KSR + + G +S A+ +I LL + + + Sbjct: 7 SPQNPLIKQLAQLKEKSRERKKSGLFLIEGKRELSLAIK-GGYEIKTLLFFPDLFSESEA 65 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNSQLLMVLDHVN 142 A + + + + K+ ++ +A+ + + L + L++V + Sbjct: 66 KAMSSYGIEIIEISKEVFQKLAHRDTTEGVIAVVKSKDHTLEALTLKSKNPLILVAEAPE 125 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 P NIGAILR+A A S D +I +S I +++ DA+ + Sbjct: 126 KPGNIGAILRTADAASVDAVII-ANPKSDLYNPNIIRSSVGCVFTTEIAMASSNDAILYL 184 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + F +P + A+++G E GL ++ AT + M G+I + Sbjct: 185 QKYNFNLFSAILQESEPYHTQDYTLPTAIVVGTEATGLTQAWRDAATQNISIPMHGVIDS 244 Query: 263 LNVSNAAAVALYITQNHF 280 +NVS AA + ++ + Sbjct: 245 MNVSVAAGILIFEAKRQR 262 >gi|90417781|ref|ZP_01225693.1| RNA methyltransferase, TrmH family, group 3 [Aurantimonas manganoxydans SI85-9A1] gi|90337453|gb|EAS51104.1| RNA methyltransferase, TrmH family, group 3 [Aurantimonas manganoxydans SI85-9A1] Length = 284 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 140/274 (51%), Positives = 181/274 (66%), Gaps = 10/274 (3%) Query: 16 KDSHYAKLRRNHRDYKK---------MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 KD+HYA LRR HRD K+ + + + LYG+HTV+AALNNP R Sbjct: 11 KDTHYATLRRAHRDRKRTDGGAAPAGALKRRPQPGRPAPAGRVRLYGIHTVAAALNNPHR 70 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 K+ LL T+NALARL A PV+ V P+ +D +G EAVHQG+ LET PL + L Sbjct: 71 KLHSLLVTRNALARL-EIAEDAIRCPVEMVEPKRLDAELGGEAVHQGVMLETEPLPAIRL 129 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + ++L++VLD V DPHN+GAILRSA AF D ++TT R+SP ES VLAK+ASGALEH Sbjct: 130 SDLGKARLVIVLDQVTDPHNVGAILRSATAFGADALVTTARHSPQESGVLAKAASGALEH 189 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + I + NL DAL + GF+TIGL SD + E + ++IA++LGAEGKGLR KTQ Sbjct: 190 VTQIEVVNLADALSALSKQGFRTIGLDSDGPESFEASLSGERIAIVLGAEGKGLRQKTQA 249 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T ++A L MPG I++LNVSNAAA+ALY T+ H Sbjct: 250 TVDALARLEMPGAIRSLNVSNAAAIALYATRRHL 283 >gi|170757788|ref|YP_001783140.1| RNA methyltransferase [Clostridium botulinum B1 str. Okra] gi|169123000|gb|ACA46836.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum B1 str. Okra] Length = 257 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 102/254 (40%), Gaps = 8/254 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVK 94 + + + G + V AL + K+ ++ + Sbjct: 2 KNRVGQQEEIREDIIEGRNAVIEALKSNKTIEKVMVAKGDLEGSIKIIISLAKEKGIVIN 61 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIG 148 V + +D I A +A T D +R +++LD + DPHN G Sbjct: 62 EVDRKKLDSISQTRAHQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHNFG 121 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +ILR+A G+I KR + + + K+++GA+E++ +++N+ + + K+ G Sbjct: 122 SILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKGIW 181 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + IAL++G+EG+G+ T+ ++ + M G I +LN S A Sbjct: 182 IYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKLTKNKCDALVKIPMFGNITSLNASVA 241 Query: 269 AAVALYITQNHFAK 282 + +Y K Sbjct: 242 GGMLMYEILKQRMK 255 >gi|296131814|ref|YP_003639061.1| RNA methyltransferase, TrmH family, group 3 [Thermincola sp. JR] gi|296030392|gb|ADG81160.1| RNA methyltransferase, TrmH family, group 3 [Thermincola potens JR] Length = 244 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 64/239 (26%), Positives = 114/239 (47%), Gaps = 11/239 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG + V AL R I ++L A + PV+ +++DK+V + Sbjct: 4 IIYGRNPVIEALKA-ERPINKILLQHGTTRAGDILNLARQRKIPVQEADKRSLDKLV--Q 60 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ A +D + +++LD + DPHN+GAI+R+A A G Sbjct: 61 GNHQGVIALVAMKAYADIDDILKTAQEKGEDPFILLLDELEDPHNLGAIIRTADAVGIHG 120 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R + + + K+++GA+E++ R++NL ++ + G +G + + + L Sbjct: 121 VVIPRRRAVGITPAVVKASAGAVEYVSVCRVTNLAQTIEYLKEKGCWVVGADAAAPQNLW 180 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++G+EGKG+ +E + L M G I +LN S AAAV Y Sbjct: 181 QADLQGPLALVIGSEGKGISRLVREKCDFLVRLPMQGKIGSLNASVAAAVLCYEVLRQR 239 >gi|168187716|ref|ZP_02622351.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum C str. Eklund] gi|169294429|gb|EDS76562.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum C str. Eklund] Length = 263 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 119/260 (45%), Gaps = 12/260 (4%) Query: 31 KKMQSFNQKS--RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--N 86 K++++ N+++ R + + G + V AL + + ++A N ++ Sbjct: 2 KELKNRNKRNFNREEKEEREDLIEGRNAVIEALRSDRTIEYVMVAKGNMTGSINKVLGIA 61 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLD 139 +K V + +D + HQG+ P ++ + N +++LD Sbjct: 62 KDKGIIIKEVDRKKLDSMS-ITGSHQGVMAIVTPYKYSEVEDIFNYAKEKGEEPFILILD 120 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DPHN+G+I+R+A GI+ KR + + + K+++GA E++ +++N+ A+ Sbjct: 121 EIEDPHNLGSIMRTAEICGVHGIVIPKRRNVGVTPTVYKTSAGAAEYVKVAKVANINRAI 180 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 ++ G G D + Q +AL++G+EG+G+ T++ + + M G Sbjct: 181 DEIKERGTWVYGADMDGENYCFQTNFKGAVALVIGSEGRGISKLTKQKCDVLVKIPMIGK 240 Query: 260 IKALNVSNAAAVALYITQNH 279 I +LN S AA + +Y Sbjct: 241 ITSLNASVAAGIMMYEVLKQ 260 >gi|325293360|ref|YP_004279224.1| tRNA/rRNA metyltransferase [Agrobacterium sp. H13-3] gi|325061213|gb|ADY64904.1| tRNA/rRNA metyltransferase [Agrobacterium sp. H13-3] Length = 295 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 151/291 (51%), Positives = 195/291 (67%), Gaps = 14/291 (4%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSF---NQKSRHTSQPENLF-----------L 51 K S +D+HYA LRR RD K+ + Q+ + ++ + L Sbjct: 2 SKDDPNDKSTRDTHYATLRRAVRDAKRERGEIPTPQQPKRRNRGAEDWKPPQLAPDQVHL 61 Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 YG+HTV AAL+NP R++ +L T NA ARLD PFPV+ V PQ IDK++G EA+H Sbjct: 62 YGLHTVRAALSNPERQLIKLSVTLNAFARLDIGEADAQPFPVEIVSPQDIDKVLGPEAIH 121 Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 QG+ LET PL LDA++ S L++VLD V DPHN+GAI+RSAVAF+ +ITT R+SP+ Sbjct: 122 QGVMLETRPLPVKKLDALKKSPLILVLDQVTDPHNVGAIMRSAVAFNAGAVITTIRHSPT 181 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 ES VLAKSASGALE IPYI+I+NL D L ++H GF ++GL S+ P+EQ KIAL Sbjct: 182 ESGVLAKSASGALELIPYIQITNLADTLGELHKLGFFSVGLDSEGPAPIEQTFTGAKIAL 241 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +LGAEGKGLR KT+ET +++A L MPG IK+LNVSNAAA+ALY TQ K Sbjct: 242 VLGAEGKGLRQKTRETVSALARLDMPGEIKSLNVSNAAAIALYATQQFLGK 292 >gi|15889284|ref|NP_354965.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens str. C58] gi|15157117|gb|AAK87750.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens str. C58] Length = 295 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 151/291 (51%), Positives = 196/291 (67%), Gaps = 14/291 (4%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSF---NQKSRHTSQPENLF-----------L 51 K S +D+HYA LRR RD K+ + Q+ + ++ + + L Sbjct: 2 SKDDPNDKSTRDTHYATLRRAVRDAKRERGEIPTPQQPKRRNRGADDWKPPQLAPDQVHL 61 Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 YG+HTV AAL+NP R++ +L T NA ARLD PFPV+ V PQ IDK++G EA+H Sbjct: 62 YGLHTVRAALSNPQRQLIKLSVTLNAFARLDIGEADAQPFPVEIVSPQEIDKVLGPEAIH 121 Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 QG+ LET PL LDA++ S L++VLD V DPHN+GAI+RSAVAF+ +ITT R+SP+ Sbjct: 122 QGVMLETRPLPVKKLDALKKSPLILVLDQVTDPHNVGAIMRSAVAFNAGAVITTIRHSPT 181 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 ES VLAKSASGALE IPYI+I+NL D L ++H GF ++GL S+ P+EQ KIAL Sbjct: 182 ESGVLAKSASGALELIPYIQITNLADTLGELHKLGFFSVGLDSEGPAPIEQTFTGAKIAL 241 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +LGAEGKGLR KT+ET +++A L MPG IK+LNVSNAAA+ALY TQ K Sbjct: 242 VLGAEGKGLRQKTRETVSALARLDMPGEIKSLNVSNAAAIALYATQQFLGK 292 >gi|187776558|ref|ZP_02993031.1| hypothetical protein CLOSPO_00070 [Clostridium sporogenes ATCC 15579] gi|187775217|gb|EDU39019.1| hypothetical protein CLOSPO_00070 [Clostridium sporogenes ATCC 15579] Length = 257 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 101/254 (39%), Gaps = 8/254 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVK 94 + + + G + V AL + K+ ++ + Sbjct: 2 KNRVGQQEEIREDIIEGRNAVIEALKSNKTIEKVMVAKGDLEGSIKIIISLAKEKGIVIN 61 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIG 148 V + +D I A +A T D +R +++LD + DPHN G Sbjct: 62 EVDRKKLDSISQTRAHQGVIAFTTPYQYCAVEDIIRYAKQKEEEPFIVILDEIEDPHNFG 121 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +ILR+A G+I KR + + + K+++GA+E++ +++N+ + + K+ G Sbjct: 122 SILRTAEVCGVHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKGIW 181 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + IAL++G+EG+G+ T+ + + M G I +LN S A Sbjct: 182 IYGADMCGNDYCFDVSLSGPIALVIGSEGRGISKLTKSKCDVLVKIPMLGNITSLNASVA 241 Query: 269 AAVALYITQNHFAK 282 + +Y K Sbjct: 242 GGMLMYEILKQRMK 255 >gi|153938342|ref|YP_001392853.1| RNA methyltransferase [Clostridium botulinum F str. Langeland] gi|152934238|gb|ABS39736.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum F str. Langeland] gi|295320831|gb|ADG01209.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum F str. 230613] Length = 257 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 101/254 (39%), Gaps = 8/254 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVK 94 + + + G + V AL + K+ ++ + Sbjct: 2 KNRVGQQEEIREDIIEGRNAVIEALKSNKTIEKVMVAKGDLEGSIKIIISLAKEKGIVIN 61 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIG 148 V + +D I A +A T D +R +++LD + DPHN G Sbjct: 62 EVDRKKLDSISQTRAHQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHNFG 121 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +ILR+A G+I KR + + + K+++GA+E++ +++N+ + + K+ G Sbjct: 122 SILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKGIW 181 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + IAL++G+EG+G+ T+ + + M G I +LN S A Sbjct: 182 IYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKLTKSKCDVLVKIPMLGNITSLNASVA 241 Query: 269 AAVALYITQNHFAK 282 + +Y K Sbjct: 242 GGMLMYEILKQRMK 255 >gi|148381440|ref|YP_001255981.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A str. ATCC 3502] gi|153932755|ref|YP_001385815.1| RNA methyltransferase [Clostridium botulinum A str. ATCC 19397] gi|153937009|ref|YP_001389222.1| RNA methyltransferase [Clostridium botulinum A str. Hall] gi|168178813|ref|ZP_02613477.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum NCTC 2916] gi|170759212|ref|YP_001788840.1| RNA methyltransferase [Clostridium botulinum A3 str. Loch Maree] gi|226950952|ref|YP_002806043.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A2 str. Kyoto] gi|148290924|emb|CAL85060.1| putative tRNA/rRNA methyltransferase [Clostridium botulinum A str. ATCC 3502] gi|152928799|gb|ABS34299.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A str. ATCC 19397] gi|152932923|gb|ABS38422.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A str. Hall] gi|169406201|gb|ACA54612.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A3 str. Loch Maree] gi|182670049|gb|EDT82025.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum NCTC 2916] gi|226841703|gb|ACO84369.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A2 str. Kyoto] Length = 257 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 101/254 (39%), Gaps = 8/254 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVK 94 + + + G + V AL + K+ ++ + Sbjct: 2 KNRVGQQEEIREDIIEGRNAVIEALKSNKTIEKVMVAKGDLEGSIKIIISLAKEKGIVIN 61 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIG 148 V + +D I A +A T D +R +++LD + DPHN G Sbjct: 62 EVDRKKLDSISQTRAHQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHNFG 121 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +ILR+A G+I KR + + + K+++GA+E++ +++N+ + + K+ G Sbjct: 122 SILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKGIW 181 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + IAL++G+EG+G+ T+ + + M G I +LN S A Sbjct: 182 IYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKLTKNKCDVLVKIPMLGNITSLNASVA 241 Query: 269 AAVALYITQNHFAK 282 + +Y K Sbjct: 242 GGMLMYEILKQRMK 255 >gi|125974550|ref|YP_001038460.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405] gi|256004091|ref|ZP_05429076.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 2360] gi|281419074|ref|ZP_06250091.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum JW20] gi|125714775|gb|ABN53267.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum ATCC 27405] gi|255992014|gb|EEU02111.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 2360] gi|281407223|gb|EFB37484.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum JW20] gi|316941668|gb|ADU75702.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 1313] Length = 277 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 60/272 (22%), Positives = 120/272 (44%), Gaps = 15/272 (5%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPE-----NLFLYGVHTVSAALNNPS--RKIFQLLATKN 76 +++++ K Q + K + + G ++V A+ KI K Sbjct: 6 KKDYKKAKTSQRSDVKLNGRKEERDGAKDLDRIEGRNSVLEAIKAGRTINKILVPKGEKE 65 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------- 129 R V+ +DKI A HQG+ A +D + Sbjct: 66 GSIRQIIALARERGIVVQETDRSNLDKISTTHA-HQGVIAYVAFKDYVEVDDILKIAQDK 124 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +++LD + D +N+G+ILR+A A G++ KR + +A ++K+++GA+E++P Sbjct: 125 GEDPYIIILDGITDAYNLGSILRTADAVGAHGVVIPKRRAIGLNAAVSKASAGAIEYVPV 184 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R++N++ ++ + +G +KP + +AL++G+EG+G+ E Sbjct: 185 ARVTNISQTIEYLKKKNIWIVGTDLSGEKPFFEADLKGPVALVIGSEGEGMGRLVSEKCD 244 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + ++ M G I +LN + AAA+ +Y + Sbjct: 245 FIVNIPMQGKISSLNAAVAAAIIMYEIRRQRN 276 >gi|322807825|emb|CBZ05400.1| trmh family tRNA/rRNAmethyltransferase YacO [Clostridium botulinum H04402 065] Length = 257 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 100/254 (39%), Gaps = 8/254 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVK 94 + + + G + V AL + K+ ++ + Sbjct: 2 KNRVGQQEEIREDIIEGRNAVIEALKSNKTIEKVMVAKGDLEGSIKIIISLAKEKGIVIN 61 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIG 148 V + +D I A +A T D +R +++LD + DPHN G Sbjct: 62 EVDRKKLDSISQTRAHQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHNFG 121 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +ILR+A G+I KR + + + K+++GA E++ +++N+ + + K+ G Sbjct: 122 SILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAAEYMKISKVTNINNVIDKLKEKGIW 181 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + IAL++G+EG+G+ T+ + + M G I +LN S A Sbjct: 182 IYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKLTKNKCDVLVKIPMLGNITSLNASVA 241 Query: 269 AAVALYITQNHFAK 282 + +Y K Sbjct: 242 GGMLMYEILKQRMK 255 >gi|182416811|ref|ZP_02948201.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521] gi|237668961|ref|ZP_04528945.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379273|gb|EDT76772.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521] gi|237657309|gb|EEP54865.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 261 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 108/258 (41%), Gaps = 8/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ +K+ + ++ ++ ++ + G V A I L+ T + ++D Sbjct: 6 SKDNNLFKETKKLKER-KNRTKSNKYIIEGFRLVQEAFKAGLN-IECLIVTCDGKDKIDS 63 Query: 84 DAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + + + +I+ E +A+ + L+ ++ D V Sbjct: 64 YLREYINKDIKIYEMVNSLFKEIISTEKPQGIVAIVHMNEKTLDLNGS----FYLLCDKV 119 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+A A DGII TK + +S G+L ++P ++ Sbjct: 120 QDPGNLGTIIRTAHAVKADGIILTKGTVDIYNEKTIRSTMGSLFYVPVHYDDENMTLVKS 179 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + F+ + S D+ K QE K+ L +G EG G+ + E A + + MPG + Sbjct: 180 LKDKKFKIVVTSLDTDKDFFQESLKGKVLLTVGNEGNGVSDEVYELADTKVKIPMPGNAE 239 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV+ A +V +Y Sbjct: 240 SLNVAIATSVIMYEKIRQ 257 >gi|220910387|ref|YP_002485698.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7425] gi|219866998|gb|ACL47337.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7425] Length = 260 Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 96/256 (37%), Gaps = 6/256 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWD 84 + K+M+ +Q ++ + L G H + A+ ++ A DW Sbjct: 6 QNPLIKQMRKLHQ-GKYRRAQQQFLLEGTHLLLEAVETGYPLEVICFTPQWQAKQAPDWL 64 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 A L ++ V Q + I G+ P L+ L + ++ + DP Sbjct: 65 AQLEQLTRLEVVSEQVLAAIAT-TVNPDGVVALAPFQPRPPLEIH---HLGLAVETLQDP 120 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G ++R+A A +G++ + E+ + ++ +G +P + LQ Sbjct: 121 GNLGTMIRTAAAAGAEGVLLSSDSVELENPKVLRATAGQWFRLPLSVAEDFQAELQHYRQ 180 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G Q + ++ +LG EG GL A + + +++LN Sbjct: 181 QGIQVVATLPQAQSNYWDVDLTCPTLFLLGNEGAGLSASVVALADRQVKIPLQPGVESLN 240 Query: 265 VSNAAAVALYITQNHF 280 V+ AAA+ LY Q Sbjct: 241 VAIAAALLLYEAQRQR 256 >gi|298208325|ref|YP_003716504.1| putative rRNA methylase [Croceibacter atlanticus HTCC2559] gi|83848246|gb|EAP86116.1| putative rRNA methylase [Croceibacter atlanticus HTCC2559] Length = 264 Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 94/256 (36%), Gaps = 2/256 (0%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ KK+ +KSR+ + + G+ + AL I ++ ++ + Sbjct: 9 SNPTLKKLLQLQEKSRNRRKEGLFVVEGLRELRLALKGGYN-ISEVFFCPELVSEDTLNN 67 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + P + + K+ + + + + + L+++ + P Sbjct: 68 LIKAPISYTELSLEVYQKVAYRGSTEGVITIVKTKAHQLVDIKTSETPLILIAEAPEKPG 127 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIGA+LR+A A + D +I +S + + T+ + + Sbjct: 128 NIGALLRTADAANVDAVII-ANPKTDLYNPNIIRSSVGCVFTNQVAVGTTTEIISFLKKQ 186 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + + + A+++G E GL + ++ AT + M G I ++NV Sbjct: 187 KVNIYCAALQASEHYHLQDFTTATAIVVGTEATGLSDEWRKNATQNIIIPMQGEIDSMNV 246 Query: 266 SNAAAVALYITQNHFA 281 S AA + +Y + Sbjct: 247 SVAAGILIYEAKRQRK 262 >gi|168181845|ref|ZP_02616509.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum Bf] gi|237796961|ref|YP_002864513.1| TrmH family RNA methyltransferase [Clostridium botulinum Ba4 str. 657] gi|182674742|gb|EDT86703.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum Bf] gi|229262334|gb|ACQ53367.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum Ba4 str. 657] Length = 257 Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 100/254 (39%), Gaps = 8/254 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVK 94 + + + G + V AL + K+ ++ + Sbjct: 2 KNRVGQQEEIREDIIEGRNAVIEALKSNKTIEKVMIAKGDLEGSIKIIISLAKEKGIVIN 61 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIG 148 V + +D I A +A T D +R +++LD + DPHN G Sbjct: 62 EVDRKKLDSISQTRAHQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHNFG 121 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +ILR+A G+I KR + + + K+++GA E++ +++N+ + + K+ G Sbjct: 122 SILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAAEYMKISKVTNINNVIDKLKEKGIW 181 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + IAL++G+EG+G+ T+ + + M G I +LN S A Sbjct: 182 IYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKLTKNKCDVLVKIPMLGNITSLNASVA 241 Query: 269 AAVALYITQNHFAK 282 + +Y K Sbjct: 242 GGMLMYEILKQRMK 255 >gi|56750360|ref|YP_171061.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] gi|56685319|dbj|BAD78541.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] Length = 258 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 97/257 (37%), Gaps = 4/257 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R + K+++ +Q ++ Q L G H + A+ + Sbjct: 4 SRQNPLTKQIRQLHQ-AKGRRQMGAFLLEGTHLLQEAIATNWPLLQVCATPAWQNQHPQL 62 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 P +TV + + +A+ ++ LL+ ++ + D Sbjct: 63 WQQAIQAAPEQTVSDDLLAYLCTTVNPDGVVAIAARQPQRQP---PTSASLLIAVETLQD 119 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+R+A A DG+ T + + ++++G +P ++L L+ Sbjct: 120 PGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVLRASAGQWFRLPIAIATDLGQTLRSWQ 179 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G+Q + + L Q L+LG EG GL P A S + +++L Sbjct: 180 QQGYQIVSTLPRATTTLWQADLTRPTVLLLGNEGAGLSPDLAAIADSAVTIPQAAGVESL 239 Query: 264 NVSNAAAVALYITQNHF 280 NV+ AAA+ LY + Sbjct: 240 NVAIAAALLLYEARRQR 256 >gi|284048831|ref|YP_003399170.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM 20731] gi|283953052|gb|ADB47855.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM 20731] Length = 260 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 53/255 (20%), Positives = 99/255 (38%), Gaps = 5/255 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K+ S K ++ + L G V AL + I L T L Sbjct: 10 NDLVKRAASLKMK-KYRQKEGLFLLEGKRAVEEALASGWT-IRALFFT--RLPEGWEQQA 65 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 P VP + KI E AL +++VLD + DP N Sbjct: 66 ENSSLPWYEVPLPVLQKITATEDPQSVAAL-VELRREELAAFAPERGMVLVLDRIRDPGN 124 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G ++R+A A G++ + + + + +S G+L H+P + + G Sbjct: 125 LGTLIRTADALGAAGVVLLENTADLYNPKVVRSTMGSLFHLPVFTGVKTGELEEWCRQHG 184 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + + + + + +K AL+LG+E +G+ P+ A + M G ++LNV+ Sbjct: 185 YALWATALEGAEDMTRLTWPEKTALVLGSEAEGVSPEILAAADQKVKIPMAGHAESLNVA 244 Query: 267 NAAAVALYITQNHFA 281 A + ++ F+ Sbjct: 245 VAGGIVMFEAARAFS 259 >gi|255527269|ref|ZP_05394150.1| RNA methyltransferase, TrmH family, group 3 [Clostridium carboxidivorans P7] gi|296187248|ref|ZP_06855644.1| RNA methyltransferase, TrmH family, group 3 [Clostridium carboxidivorans P7] gi|255509054|gb|EET85413.1| RNA methyltransferase, TrmH family, group 3 [Clostridium carboxidivorans P7] gi|296048119|gb|EFG87557.1| RNA methyltransferase, TrmH family, group 3 [Clostridium carboxidivorans P7] Length = 276 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 60/279 (21%), Positives = 119/279 (42%), Gaps = 18/279 (6%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72 + KD+ ++ +++ ++ + G + V L + L+ Sbjct: 6 KNFKDNSNRRIEKDNNF--------SRNTSEKSFREDLIEGRNAVIEVLKSERTVEQILV 57 Query: 73 ATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 A + ++ L +K V + +D++ + HQG+ + P +D + Sbjct: 58 ANGDVSGSINLILALAKEKKVVIKQVDRKKLDQLS-QTGAHQGVIAQITPYKYCDVDDII 116 Query: 131 NS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + +++LD + DPHN G+I+R+A GII KR + + + K++ GA Sbjct: 117 SYAEEKGEKPFIVILDEIEDPHNFGSIIRTAETCGVHGIIIPKRRNVGLTPAVYKASVGA 176 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 +EH+ +I+N+ +A+ K+ G G + + +ALI+G+EGKG+ Sbjct: 177 IEHMKIAKITNINNAIDKLKEQGIWVYGADMNGENYCYDVDFRGAVALIIGSEGKGILKL 236 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 T+ + + M G I +LN S A + +Y K Sbjct: 237 TKNKCDVLVKIPMVGNISSLNASVAGGILMYEILKQRFK 275 >gi|226311224|ref|YP_002771118.1| RNA methyltransferase [Brevibacillus brevis NBRC 100599] gi|226094172|dbj|BAH42614.1| putative RNA methyltransferase [Brevibacillus brevis NBRC 100599] Length = 271 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 55/279 (19%), Positives = 107/279 (38%), Gaps = 18/279 (6%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68 +E I S++ + K++ + + + + + G H V AL + + + Sbjct: 3 NEIITSVQ----------NPLVKRLHQLLSR-KGREEQQRFLVEGAHLVEEALKSGAEVV 51 Query: 69 FQLLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 + + + AN P V P + K+ ++ +A Sbjct: 52 TVIYDQQRDMDPACQRALANHPEAVQVIAAPETVLAKLSETKSPQGIVAEVKKTAADWAK 111 Query: 127 DAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 + + LL+ LD + DP N+G ILR+A A + DG++ + + ++ Sbjct: 112 WVDQKREEQGSLLLLFLDEIQDPGNLGTILRTAEAAAIDGVVLGSGSVDIYNGKVVRATM 171 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 GAL IP S + A + G I + ++ AL++G EG+G+ Sbjct: 172 GALFRIPVFTQSLVDTADEWKAKGGRVLISSLEQNSVSYDEADYAGLTALVIGNEGRGVS 231 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A H+ + G ++LN + AA + +Y Q Sbjct: 232 KEMFAKADQFVHIPLYGGAESLNAAVAAGIFVYEAQRKR 270 >gi|113476712|ref|YP_722773.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101] gi|110167760|gb|ABG52300.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum IMS101] Length = 261 Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 104/256 (40%), Gaps = 6/256 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWD 84 + K+++ +Q S+ + + + G H + A I + + ++ Sbjct: 6 QNSLVKQIRQLHQ-SKGRQEQQLFLVEGTHLLEEACKRNYPLITVCHTFEWQEKHKFLYE 64 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 ++ V + I + + A + ++ + L +VLD + DP Sbjct: 65 LVSQKAQRIELVSTKIIQSLATTVSP----DGVVAIAPQSQTNFLKITTLGIVLDKIQDP 120 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G I+R+AVA + DG+ ++ + ++++G ++ NL + + K+ S Sbjct: 121 GNLGTIIRTAVATNIDGLFVSRDSVDLSHPKVVRASAGEWFNLHKAISENLKNEILKLQS 180 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G Q + +S + ++LG EG G+ + A + + +++LN Sbjct: 181 QGLQVLATVPNSNINYWEIDLRKPTIIVLGNEGSGISKDLIDLADYSVKIPLSNGVESLN 240 Query: 265 VSNAAAVALYITQNHF 280 V+ +AA+ LY Q Sbjct: 241 VAVSAAIILYEIQRQR 256 >gi|255659335|ref|ZP_05404744.1| RNA methyltransferase, TrmH family, group 3 [Mitsuokella multacida DSM 20544] gi|260848417|gb|EEX68424.1| RNA methyltransferase, TrmH family, group 3 [Mitsuokella multacida DSM 20544] Length = 289 Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 14/289 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M K+ + + + K H+ + ++ P+++ + G + V+ A Sbjct: 1 MEQ---KRKTRPQERRSRKFEKEAPRHKRPQSETEPKRREEPRELPDDVLV-GRNAVTEA 56 Query: 61 LNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + K++ + V+ V I+ + G HQG+ Sbjct: 57 LKSGRGINKLWIASGDREGSVAEIAALAKERGIVVQYVERAKIEALAGGHR-HQGVLAYV 115 Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 AP+ L+ + + L++LD + DPHN+GA+LR+A A GI+ KR S S Sbjct: 116 APVPYAELEDILKAAEAKGEAPFLVLLDELEDPHNLGALLRTADATGVHGILIPKRRSVS 175 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 +A +AK+++GA+E++P RI N+ L+K+ GF G D +K + + L Sbjct: 176 LNATVAKTSAGAVEYVPVARIGNIAQTLKKLKEKGFWVAGADMDGEKAYYEADLTGPLVL 235 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++G+EGKG+ T+E + + M G I +LN S A ++ +Y + Sbjct: 236 VVGSEGKGMSRLTKEACDFIVRMPMVGRINSLNASVAGSILMYESMRQR 284 >gi|225572770|ref|ZP_03781525.1| hypothetical protein RUMHYD_00961 [Blautia hydrogenotrophica DSM 10507] gi|225039827|gb|EEG50073.1| hypothetical protein RUMHYD_00961 [Blautia hydrogenotrophica DSM 10507] Length = 260 Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 102/257 (39%), Gaps = 4/257 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K + QK++ G+ A ++ K++ + L Sbjct: 6 SNGQIKNIIQLQQKTKARRDRGLFVAEGLKMFQEAPDSWIEKVYIA----DRLYEEQEIQ 61 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV+ V + +I + L L P + + LLMVL+ + DP Sbjct: 62 KRLGSLPVEIVDDRIFRQISDTKTPQGILCLLRCPHYRLEKILEKENPLLMVLEDLQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A DGI+ +K + + +S G++ +P++ I N+ +AL+ + Sbjct: 122 NVGTIIRTAEGAGADGILLSKNTVDIFNPKVIRSTMGSIYRMPFVYIENMEEALRLLKKK 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 T K + E A +G EG GL + E A + M G +++LN Sbjct: 182 KVSTYAAHLQGKNTYDGESYLRGTAFFVGNEGNGLSRQLSEKADCWIRIPMEGQVESLNA 241 Query: 266 SNAAAVALYITQNHFAK 282 + AA + +Y + Sbjct: 242 AMAAGILMYEAGRQRRR 258 >gi|163868081|ref|YP_001609285.1| tRNA/rRNA metyltransferase [Bartonella tribocorum CIP 105476] gi|161017732|emb|CAK01290.1| tRNA/rRNA metyltransferase [Bartonella tribocorum CIP 105476] Length = 276 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 136/274 (49%), Positives = 182/274 (66%), Gaps = 5/274 (1%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS----QPENLFLYGVHTVSAALNNPSR 66 K + ++SHYA+LRR +RD K S + K+ Q + LYG+H+V AAL NP R Sbjct: 2 KEKTSQNSHYARLRRRYRDTKASSSRSSKNMKKKTASLQQGIIHLYGIHSVQAALKNPKR 61 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 L T+NAL RL+ + +P PV P+ +D +VG EAVHQG+ LET+PL L Sbjct: 62 IFKCLYVTQNALKRLNMSES-DYPCPVTLCTPKYLDSLVGSEAVHQGIVLETSPLKPCKL 120 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + N+ L++V+D + DPHN+GAI+RSAVAF +ITT R+SP ES VLAK+ASGALE Sbjct: 121 SELTNTDLVIVMDQITDPHNVGAIMRSAVAFKAKALITTCRHSPHESGVLAKAASGALEM 180 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 I YI + NL + LQ++H GF + GL S+ +PLE + KIAL+LGAEGKGLR KT+E Sbjct: 181 IHYITVRNLAETLQEIHQTGFTSFGLDSEGDQPLETTLTGSKIALVLGAEGKGLRKKTRE 240 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T ++A L MPG IK+LNVSNAA +ALY+ + Sbjct: 241 TVCALARLDMPGNIKSLNVSNAATIALYVAHKYL 274 >gi|126662021|ref|ZP_01733020.1| putative rRNA methylase [Flavobacteria bacterium BAL38] gi|126625400|gb|EAZ96089.1| putative rRNA methylase [Flavobacteria bacterium BAL38] Length = 264 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 95/280 (33%), Gaps = 19/280 (6%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ + + K + +K++ Q + G + A Sbjct: 1 MKQITSVQ------------------NPFIKSLVQLQEKAKVRKQTSTFIIEGKREIELA 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L L + + + + + + K+ ++ LA+ Sbjct: 43 LKGDYELETILFLPEIISELELKNLIKSNGVDIIEISKEVYKKLAYRDTTEGILAIAKTK 102 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L+ + + + L+++ + + P N+GAILR+A A + D +I + Sbjct: 103 SLALSELKLSKNPLILIGESLEKPGNVGAILRTADAANIDAVII-ANPKSDLYNPNIVRS 161 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 S I + + + + + + + AL++G E GL Sbjct: 162 SVGCLFTRQIAVGTTEEVIAYLKANNISIYSATLQDSTEYHTQNYTTPTALVVGTEATGL 221 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 K + +T + M G I ++NVS AAA+ L+ + Sbjct: 222 SEKWRIESTKNIIIPMQGEIDSMNVSVAAAILLFEAKRQR 261 >gi|166368966|ref|YP_001661239.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] gi|166091339|dbj|BAG06047.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] Length = 268 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 6/258 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K+++ + ++R + + G H + AL + + T+ R A Sbjct: 6 QNPLIKQIRKLH-RTRERQEQNLSLIEGTHLLETALALNC-SLETVCYTEKWQQRQAELA 63 Query: 86 NLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V+ V P+ + + +A L P QL +VL+ + D Sbjct: 64 EKFQNQAKRVEIVSPEVLASLATTVNPDGVIATIARDHLHPV--PQNPLQLGLVLERLQD 121 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+R+AVA GI + ++ + +S++G P + S+L+ ++K Sbjct: 122 PGNLGTIIRTAVATEVQGIWLSLDSVEIDNPKVIRSSAGEWFRSPLVVESDLSALVKKYQ 181 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + G + I + K + ++LG EG GL P+ A + + G +++L Sbjct: 182 AQGVKAIATLPTATKSHWEIDFTRPTLILLGNEGAGLSPQLAALADETVKIPLFGGVESL 241 Query: 264 NVSNAAAVALYITQNHFA 281 NV+ A AV LY + + Sbjct: 242 NVAIATAVILYEARRQLS 259 >gi|153009269|ref|YP_001370484.1| RNA methyltransferase [Ochrobactrum anthropi ATCC 49188] gi|151561157|gb|ABS14655.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum anthropi ATCC 49188] Length = 286 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 140/288 (48%), Positives = 189/288 (65%), Gaps = 13/288 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52 M + ++ K DSHYA+LRR HRD K + + + LY Sbjct: 1 MTDQNSPRTPK-----DSHYARLRRQHRDQKAVTEGKSPRKPQRPSISAGAVTEGTVRLY 55 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+HTV AA+ NP RKI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQ Sbjct: 56 GLHTVRAAVENPERKILRMRATRNGFARLEIGEAESLPFPVEIVDPRDIDKETGSEAVHQ 115 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G+ +E PL + L +++S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E Sbjct: 116 GVMIEAEPLRARKLSELKDSPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 175 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + VLAK+ASGALE I +I + NL +A++++HS GFQTIGL S+ + +E + +IAL+ Sbjct: 176 TGVLAKAASGALEMISHIEVRNLAEAIEELHSLGFQTIGLDSEGPQEMEATLSGGRIALV 235 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 236 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283 >gi|229823223|ref|ZP_04449292.1| hypothetical protein GCWU000282_00521 [Catonella morbi ATCC 51271] gi|229787389|gb|EEP23503.1| hypothetical protein GCWU000282_00521 [Catonella morbi ATCC 51271] Length = 255 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 63/278 (22%), Positives = 119/278 (42%), Gaps = 25/278 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K++ KI + K A + + + G H V A Sbjct: 1 MEVIQSKQNPKIKAWKKLATA-------------------KGRQKAGQYLIEGTHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + + L+AT + L + P+ V P+ + + + Sbjct: 42 LKSG-QPVRHLVATLD--YDLSQLPDQALSLPLLLVSPELLKDLSETPTPQ--GIMAIID 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L S LD + Q ++LD V DP N+G ++R+A A + DG+I K + + +++ Sbjct: 97 LPSSPLDWQPSGQRYLILDAVQDPGNLGTLIRTADAAAYDGVILGKGTVDVYNDKVLRAS 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKG 239 G+L H+ + + L +A + G + + + K ++ N K+AL+LG EG+G Sbjct: 157 QGSLWHLEVVSLDLLQEARPAFEAAGIPWLVTALHQEAKAYQEVPANQKLALVLGNEGQG 216 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + A ++ MPG ++LNV+ A + ++ Q Sbjct: 217 VSEAVIQVADQTIYIPMPGQAESLNVAVAGGILMFYFQ 254 >gi|253681905|ref|ZP_04862702.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum D str. 1873] gi|253561617|gb|EES91069.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum D str. 1873] Length = 263 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 107/244 (43%), Gaps = 10/244 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTID 102 + + G + V AL + + ++A + ++ + +K V + +D Sbjct: 18 EEREDLIEGRNAVIEALKSDRTVEYVMIAKGSVTGSINKVVAIAKDKGIVIKEVDRKKLD 77 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAV 155 + HQG+ P ++ + +++LD + DPHN+G+I+R+A Sbjct: 78 SMS-ITGSHQGVIAIVTPYQYCEVEDILKCAEEKGEDPFILILDEIEDPHNLGSIMRTAE 136 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 GII KR + + + K+++GA E++ +++NL A+ + G G Sbjct: 137 ICGVHGIIIPKRRNVGITPTVYKTSAGAAEYMKVAKVANLNRAIDNIKEKGIWVYGADMS 196 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + Q +AL++G+EG+G+ T+E + + M G I +LN S AA + +Y Sbjct: 197 GESYCFQTNFKGAVALVIGSEGRGVSKLTKEKCDVLVKIPMVGNITSLNASVAAGIMMYE 256 Query: 276 TQNH 279 Sbjct: 257 VLKQ 260 >gi|15672589|ref|NP_266763.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|12723502|gb|AAK04705.1|AE006293_11 tRNA/rRNA methyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|326406108|gb|ADZ63179.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis CV56] Length = 252 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 61/277 (22%), Positives = 111/277 (40%), Gaps = 30/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +IS K ++KI + K R+N + + G H + A Sbjct: 1 MEIISSKDNKKIKEARKLLTKKYRKN---------------------SYLIEGFHLLEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L R I Q+ +N L +L L V V + + + E+ +A Sbjct: 40 LKAG-RSIKQIFVEENKLTKLTEMIGSEKLLTDLSVNLVSKEVLKSLADSESPQGLIAEV 98 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 T A + ++L++V DP N+G ++R+A A +I + S + Sbjct: 99 TKIEEVIDFSAAK----FLLLENVQDPGNVGTMIRTADAAGFSAVILLGETADIYSPKVM 154 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S G+ H+P +R++ Q + S + + + ALI+G EG Sbjct: 155 RSMQGSNFHLPLVRMAKEDCFAQLKKAGISILTTTLSANSVSYKIINEPH-FALIMGNEG 213 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ + + A + H+ MPG ++LNV+ AA + ++ Sbjct: 214 AGVSDEAVKAADKLVHIDMPGQAESLNVAVAAGILMF 250 >gi|281491073|ref|YP_003353053.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis KF147] gi|281374831|gb|ADA64351.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis KF147] Length = 252 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 60/277 (21%), Positives = 110/277 (39%), Gaps = 30/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +IS K ++KI + K R+N + + G H + A Sbjct: 1 MEIISSKDNKKIKEARKLLTKKYRKN---------------------SYLIEGFHLLEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L R I Q+ +N L +L V V + + + E+ +A Sbjct: 40 LKAG-RSIKQIFVEENKLTKLTEMIGAEKSLTDLSVNLVSKEVLKSLADSESPQGLIAEV 98 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 T A + ++L++V DP N+G ++R+A A +I + S + Sbjct: 99 TKIEEVIDFSAAK----FLLLENVQDPGNVGTMIRTADAAGFSAVILLGETADIYSPKVM 154 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S G+ H+P +R++ Q + S + + + ALI+G EG Sbjct: 155 RSMQGSNFHLPLVRMAKEDCFAQLKKAGISILTTTLSANSVSYKIINEPH-FALIMGNEG 213 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ + + A + H+ MPG ++LNV+ AA + ++ Sbjct: 214 AGVSDEAVKAADKLVHIDMPGQAESLNVAVAAGILMF 250 >gi|253580955|ref|ZP_04858217.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847797|gb|EES75765.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 257 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 100/255 (39%), Gaps = 4/255 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K + NQK++ + G A P I ++ AL+ Sbjct: 6 NNGQVKNIIQLNQKTKARREQGLFVAEGRKMFGEA---PRDWISKVYV-SEALSGDAELM 61 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 P + V ++ + + + P + L+M+L+ + DP Sbjct: 62 AQVEKLPYEIVTDSVFRQMSDTQTPQGIMTVLKKPSYIMEDILGGENPLVMILEDLQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G ILR+ G++ TK + + +S G++ +P++ + ++ Q++ Sbjct: 122 NAGTILRTGEGAGVSGVLLTKTCVDITNPKVIRSTMGSVYRMPFLYVESVVSLAQELKDR 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +T K +QE A ++G EGKGL + ++A + + M G +++LN Sbjct: 182 NIRTFAAHLHGKNSYDQESYTGGTAFLIGNEGKGLTDEAADSADCLIRIPMCGKVESLNA 241 Query: 266 SNAAAVALYITQNHF 280 + A+ + +Y Sbjct: 242 AMASGILMYEAARQR 256 >gi|118443866|ref|YP_877180.1| RNA methyltransferase [Clostridium novyi NT] gi|118134322|gb|ABK61366.1| RNA methyltransferase, TrmH family, group 3 [Clostridium novyi NT] Length = 265 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 110/248 (44%), Gaps = 10/248 (4%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPP 98 R + + G + V AL + + ++A N ++ +K V Sbjct: 16 REEKEEREDLIEGRNAVIEALRSDRTIEYVMVAKGNVSGSINKVLGIAKDKGIIIKEVDR 75 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAIL 151 + +D + HQG+ P ++ + N ++VLD + DPHN+G+I+ Sbjct: 76 KKLDSMS-ITGAHQGVMAIVTPFKYSQIEDIFNYAKEKGEEPFILVLDEIEDPHNLGSIM 134 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A GI+ KR + + + K+++GA E++ +++N+ A+ ++ G G Sbjct: 135 RTAEICGVHGIVIPKRRNVGVTPTVYKTSAGAAEYVKVAKVANINRAIDEIKERGIWVYG 194 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 D + Q +AL++G+EGKG+ T++ + + M G I +LN S AA + Sbjct: 195 ADMDGENYCFQTNFKGAVALVIGSEGKGISKLTKQKCDVLIKIPMVGKITSLNASVAAGI 254 Query: 272 ALYITQNH 279 +Y Sbjct: 255 MMYEVLKQ 262 >gi|284053061|ref|ZP_06383271.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira platensis str. Paraca] gi|291572137|dbj|BAI94409.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis NIES-39] Length = 259 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 97/258 (37%), Gaps = 6/258 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA-TKNALARLD 82 + K+++ + ++ + L G H V AA + R Sbjct: 4 SPQNPLVKQIRQLHT-AKGRREEGLFILEGTHLVEAACAVNWDIMAVCCTPQWEERHRDL 62 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 W+ + + V + I + A V + L +VL+ V Sbjct: 63 WELAVKRADRTEQVSDRLIAAMT----TTVNPDGVVAIARRRDQTPVPITSLGLVLETVQ 118 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ++R+A A +G+ + + ++++GA +P S+L L + Sbjct: 119 DPGNLGTMIRTATAAGVEGLWLSSDSVDPTHPKVLRASAGAWFEVPIAVHSDLITQLSDI 178 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G Q + +D+ + A++LG EG GL P A + + G +++ Sbjct: 179 QKQGIQIVATRADASLSYWEIDLRPPTAIVLGNEGSGLSPDLTSLADYHIRVPLLGNVES 238 Query: 263 LNVSNAAAVALYITQNHF 280 LNV+ AA+ LY Q Sbjct: 239 LNVAICAALILYEAQRQR 256 >gi|294056009|ref|YP_003549667.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis DSM 45221] gi|293615342|gb|ADE55497.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis DSM 45221] Length = 269 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 50/262 (19%), Positives = 89/262 (33%), Gaps = 8/262 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-----AL 78 + + K + ++ +H + E + G+ + A+ + I + A Sbjct: 8 SKQNEQVKNLVKLRER-KHRDRQERFLVEGLRELEHAIGSGFE-IETIYFCPELFPSAAH 65 Query: 79 ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 P+ + + K +E + + S + LL+VL Sbjct: 66 QATIDQLRRDGEVPLTRMSEEAFSKAAYREGPDGIVGIGKQQAHSLHELHLPKQPLLLVL 125 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 + + P N+GAILRSA D II A +S L I ++ Sbjct: 126 EGIEKPGNLGAILRSADGAGADAIIL-TDCILDLYNPNAIRSSQGLIFALPIVNADREAL 184 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + +QT+ + + + + AL G+E GL + M G Sbjct: 185 ADWLQKGRYQTVAATPHTDQSHWEIDYTKPTALFFGSESDGLSDYWMNHLDQRICIPMKG 244 Query: 259 IIKALNVSNAAAVALYITQNHF 280 +LNV+ AAAV LY + Sbjct: 245 RADSLNVAAAAAVCLYEARRQR 266 >gi|158319524|ref|YP_001512031.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs] gi|158139723|gb|ABW18035.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus oremlandii OhILAs] Length = 250 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 10/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKE 108 + G + V AL + L+A L P++ V Q ++++ + Sbjct: 6 IAGRNPVMEALKSGREIDKILIAKGTEGGSLIKIIGKAKDRGIPIQYVERQKLNEMSSSD 65 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 VHQG+ A ++ + L++LD + DPHN+G+++R+A A DG Sbjct: 66 -VHQGIIATVAAYEYCEVEDILENAKSKGRDPFLLILDEIMDPHNLGSMMRTADAVGVDG 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II KR S ++ +AKS++GA+E++P ++SN+ + K+ G G K Sbjct: 125 IIIPKRRSVGLTSTVAKSSAGAIEYVPVAKVSNIAQTIDKIKDMGIWVAGADMSGSKEHY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +AL++G EG+G+ +E + L M G + +LN S AAAV +Y + Sbjct: 185 NMDLKGPLALVIGNEGEGISRLIKEKCDFLIKLPMVGQVSSLNASVAAAVLMYEVFRQRS 244 >gi|307150993|ref|YP_003886377.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7822] gi|306981221|gb|ADN13102.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7822] Length = 264 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DW 83 + K+M+ + +++ + + G H + A + + T + R W Sbjct: 6 QNPLVKQMRKLH-RAKGRREQNLFLIEGTHLLETACKV-KSSLMVVCCTPDWQNRYPQLW 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + V P+ + + +A L + L +VL+ + D Sbjct: 64 ELASQKAQRAEIVTPEILAAMTTTVNPDGVVASAARISNPTEL--ISPLSLGLVLEQLQD 121 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+R+AVA +G+ + ++ + ++++G +P NL ++ Sbjct: 122 PGNLGTIIRTAVATEVEGLWLSDDSVDVDNPKVLRASAGEWFRVPMRVSQNLPQVIEDYK 181 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 S Q I K + +++G EG GL + A ++ + G +++L Sbjct: 182 SQNVQVIATLPQGTKTYWEIDFTRPTLILMGNEGAGLSDELISLADIGVNIPLGGGVESL 241 Query: 264 NVSNAAAVALYITQNHFA 281 NV+ A A+ LY + A Sbjct: 242 NVAIATALLLYEAKRQRA 259 >gi|323704472|ref|ZP_08116050.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium xylanolyticum LX-11] gi|323535934|gb|EGB25707.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium xylanolyticum LX-11] Length = 256 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 106/257 (41%), Gaps = 8/257 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + K ++ K ++ + F+ G ++V AL + + LL ++ Sbjct: 5 SEKNEFIKDVKKLADK-KYRYEKRLFFVEGKNSVFEALKSGFEIVH-LLVAEDFNIDFQI 62 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + V + KI A +A+ D V+ ++LD V D Sbjct: 63 EKE-----KIVFVDEKVFKKISDTVAPQMIMAV-VKMPKWEVNDIVKEGGFYVILDEVQD 116 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+RSA AF+ DG+ + + +S G++ H+P + + + Sbjct: 117 PGNVGTIIRSADAFNVDGVFAINNTVDIYNPKVLRSTMGSIFHLPVVNDVEPSRLFHVLK 176 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + + S ++K + + ALI G E +G+ E S + M G+ ++L Sbjct: 177 KHGIRILSTSLKAEKYIYDFDISKNAALIFGNESRGVNRLLDEFIDSSFKIPMDGMAESL 236 Query: 264 NVSNAAAVALYITQNHF 280 NVS AA++ LY ++ Sbjct: 237 NVSVAASICLYESERQR 253 >gi|86133430|ref|ZP_01052012.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] gi|85820293|gb|EAQ41440.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] Length = 264 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 100/281 (35%), Gaps = 21/281 (7%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ I K + +KSR + + G+ ++ A Sbjct: 1 MKQITSSQNTYI------------------KGLLKLQEKSRERKKLGLFIIEGLREINLA 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL-ETA 119 L +L + + + D + V + + +K+ + + +A+ Sbjct: 43 LKANYT-FRTVLFCIDLIQKTAVDTLIDSSTEVIEISKEVYEKLAYRNSTEGIIAVANAK 101 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + + L+++ + + P N+GA+LR+A A + D +I Sbjct: 102 SFSLGEISFSNKNPLILIAESLEKPGNVGALLRTADAANVDAVII-ANPKSDLYNSNIIR 160 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 +S I + + + + + + E A+++G E G Sbjct: 161 SSVGCVFTNQIAVGTSEEIITFLKENKISIYAATLQNSNKYHLEDYKKPSAIVVGTEATG 220 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L ++ AT ++ M G I ++NVS AAA+ ++ + Sbjct: 221 LSEIWRDKATQNINIPMQGKIDSMNVSVAAAIVIFEAKRQR 261 >gi|319783294|ref|YP_004142770.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169182|gb|ADV12720.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 282 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 143/275 (52%), Positives = 191/275 (69%), Gaps = 6/275 (2%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHT------SQPENLFLYGVHTVSAALN 62 S+K + KD+HYAKLRR +RD K + + R + + LYG+HTV AAL+ Sbjct: 2 SDKTNTPKDTHYAKLRRAYRDEKSGGAPAFRPRQPVPPGENAADGLVRLYGLHTVRAALD 61 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 NP RKI ++L T+NA RL+ PF + V P+ IDKI G +AVHQG+ +E PL Sbjct: 62 NPRRKIRKMLVTRNAAERLEIADLAALPFKTELVEPRDIDKITGSDAVHQGVLIEAEPLK 121 Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + LDA+ +++L++VLD + DPHN+GAILRSAVAF +ITT R+SP ES VLAKSASG Sbjct: 122 AKRLDALGDAKLVLVLDQITDPHNVGAILRSAVAFGAGALITTARHSPQESGVLAKSASG 181 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ALEHI I + NL +AL ++H GF+T+GL SD+ LE+ +KIAL+LGAEGKGLR Sbjct: 182 ALEHIDQIEVKNLAEALGQLHEAGFRTMGLDSDAPAELEKSFAGEKIALVLGAEGKGLRQ 241 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 KT+ET T++A L MPG I +LNVSNAAA++LY+ + Sbjct: 242 KTRETVTTLARLDMPGAIHSLNVSNAAAISLYVAR 276 >gi|331268394|ref|YP_004394886.1| TrmH family RNA methyltransferase [Clostridium botulinum BKT015925] gi|329124944|gb|AEB74889.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum BKT015925] Length = 263 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 107/244 (43%), Gaps = 10/244 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTID 102 + + G + V AL + + ++A + ++ + +K V + +D Sbjct: 18 EEREDLIEGRNAVIEALKSDRTVEYVMIAKGSVTGSINKVVAIAKDKGIVIKEVDRKKLD 77 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAV 155 + HQG+ P ++ + +++LD + DPHN+G+I+R+A Sbjct: 78 SMS-ITGSHQGVMAIVTPYQYCEVEDILKCAEEKGEDPFILILDEIEDPHNLGSIMRTAE 136 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 GII KR + + + K+++GA E++ +++NL ++ + G G Sbjct: 137 ICGVHGIIIPKRRNVGITPTVYKTSAGATEYMKVAKVANLNRSIDDIKEKGIWVYGADMA 196 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + Q +AL++G+EG+G+ T+E + + M G I +LN S AA + +Y Sbjct: 197 GESYCFQTNFKGAVALVIGSEGRGISKLTKEKCDVLVKVPMVGNITSLNASVAAGIMMYE 256 Query: 276 TQNH 279 Sbjct: 257 VLKQ 260 >gi|251779338|ref|ZP_04822258.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083653|gb|EES49543.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 290 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 73/291 (25%), Positives = 128/291 (43%), Gaps = 17/291 (5%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKM---QSFNQKSRHTS--QPENLFLYGVHTVSAAL 61 +++ K + ++S+ K R N+R KK + + + + + + G + V AL Sbjct: 2 RENTKAGNKRESNREKNRENNRGNKKEINKNRVVENNSYDNSFEEREDIIIGRNAVLEAL 61 Query: 62 NNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 R I L + + L +K V + +D + AVHQG+ Sbjct: 62 KT-ERTIETLYISNSKLEGSINAIISKAKDKKILIKEVDKRKLDSMC-NNAVHQGVIARV 119 Query: 119 APLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 P + + + +++LD V DPHN+G+I+R+A F GII KR S S Sbjct: 120 TPYEYSEVSDILELAEKKGENPFIVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSAS 179 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + ++ KS+ GA+EH+ R++NL + ++ G G +++ Q A+ Sbjct: 180 VTTMVYKSSVGAIEHVKVARVTNLNSVIDELKEKGIWVYGTDIRAEEYSYQTDFGGPCAI 239 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 I+G EGKG+ T + + + M G I +LN S A + +Y K Sbjct: 240 IIGNEGKGISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMYEVLKGRLK 290 >gi|159030692|emb|CAO88365.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 264 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 105/258 (40%), Gaps = 6/258 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K+++ + ++R + + G H + AL + T+ R A Sbjct: 6 QNPLIKQIRKLH-RTRERQEQNLSLIEGTHLLETALAVNCSP-ETVCYTEKWRQRQGQLA 63 Query: 86 NLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V+ V P+ + + G+ + + L +VL+ + D Sbjct: 64 EKLQNQAKRVEIVSPEVLASLAT-TVNPDGVIATISRTHLHPIPQNPLQ-LGLVLERLQD 121 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+R+AVA GI + ++ + +S++G P + S+L+ ++K Sbjct: 122 PGNLGTIIRTAVATEVQGIWLSLDSVEIDNPKVIRSSAGEWFRSPLVVESDLSALVKKYQ 181 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + G + I + K + ++LG EG GL P+ A + + G +++L Sbjct: 182 AQGVKAIATLPTATKNHWEIDFTRPTLILLGNEGAGLSPQLATLADETVKIPLFGGVESL 241 Query: 264 NVSNAAAVALYITQNHFA 281 NV+ A AV LY + + Sbjct: 242 NVAIATAVILYEARRQLS 259 >gi|304317237|ref|YP_003852382.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778739|gb|ADL69298.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 256 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 106/257 (41%), Gaps = 8/257 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + K ++ ++K ++ + + F+ G ++V AL + + L+ + +D Sbjct: 5 SEKNDLIKDIKKLSEK-KYRYEKKLFFVEGKNSVFEALKSSFEIKYVLV---SEDCDIDL 60 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 D V KI Q + D ++ L ++LD V D Sbjct: 61 DVEKDRLI---FVDKGIFKKISD-TVTPQMIMAVVKMPDYNVNDLIKEDGLYIILDEVQD 116 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+RSA AF+ D + T + +S G++ H+P + + + + Sbjct: 117 PGNLGTIIRSADAFNVDAVFTINNTVDVYNPKALRSTMGSIFHLPVVNDVPVDKLFEALK 176 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + + + ++K + + IALI G E +G+ + M G+ ++L Sbjct: 177 RNGVRVLSTNLKAEKYIYDCDISKNIALIFGNESRGVNKSLDIYVDGSFKIPMDGMAESL 236 Query: 264 NVSNAAAVALYITQNHF 280 NVS AA++ LY +Q Sbjct: 237 NVSVAASICLYESQRQR 253 >gi|150025910|ref|YP_001296736.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149772451|emb|CAL43933.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 262 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 95/280 (33%), Gaps = 20/280 (7%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ I S + +KS+ + + G + A Sbjct: 1 MKQITSSQNPYIKS------------------LVLLQEKSKARKKSGTFLIEGQREIELA 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 I +L + +++ + + + K+ ++ LA+ Sbjct: 43 -QKGGFVIETILFLPDLISQKQITQITNQAHDIIEISKEVYQKLAYRDTTEGILAVAKTK 101 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + L+++ + P NIGA+LR+A A + D +I + Sbjct: 102 PFLLSDLKLSQTPLILIAEAPEKPGNIGALLRTADAANLDAVI-IANPKSDLYNPNIVRS 160 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 S I + + + + + P + AL++G E GL Sbjct: 161 SVGCLFTTQIATGTTQEIITYLKENKINFYCATLQNATPYHTQDYTPPTALVVGTEATGL 220 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + AT + M G I ++NVS AAA+ ++ + Sbjct: 221 TQEWRNNATQNIIIPMQGEIDSMNVSVAAAILIFEAKRQR 260 >gi|147676634|ref|YP_001210849.1| rRNA methylases [Pelotomaculum thermopropionicum SI] gi|146272731|dbj|BAF58480.1| rRNA methylases [Pelotomaculum thermopropionicum SI] Length = 261 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 80/257 (31%), Positives = 124/257 (48%), Gaps = 12/257 (4%) Query: 35 SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPF 91 + N K + ++ E + G + V AL R I +LL + AL R +D Sbjct: 5 NLNLKKKGRNRLE-DIIAGRNPVREALRAN-RPINKLLIAEGALTGSLREIYDLARERKI 62 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPH 145 PV+ V Q + K+V EA HQG+ A +D L++LD V+DPH Sbjct: 63 PVQRVERQHLSKLV-PEASHQGVVALAAVREYVDVDDILAGVAPGEDPFLILLDEVHDPH 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAILR+A A GII +R S S +A+S++GA+E++P R++N+ ++ + Sbjct: 122 NLGAILRTADAAGAHGIIIPRRRSAPLSRTVARSSAGAVEYVPVARVANIARTIELLKGK 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G D ++ + +AL++G EGKGL +E + L M G + +LN Sbjct: 182 GLWVAGADPDGREVYWDARLDGPVALVIGGEGKGLGRLVKEKCDVLVRLPMSGRVNSLNA 241 Query: 266 SNAAAVALYITQNHFAK 282 S AAA+ Y K Sbjct: 242 SVAAALLSYEVVRQRRK 258 >gi|261880182|ref|ZP_06006609.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361] gi|270333154|gb|EFA43940.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361] Length = 269 Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 51/259 (19%), Positives = 100/259 (38%), Gaps = 5/259 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K + + QKS + + GV + + I L ++ L + Sbjct: 11 QNAKVKNLVALQQKSSERRKQGLFVVEGVRELIHCAHAGYE-IENLFCCRDILDKNPEAW 69 Query: 86 NLPHPF---PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 L + V +K+ + + +A + + S L++VL+ V Sbjct: 70 KLDSLIGQTTIYEVTQAVYEKMAYRGSTEGMMAEVKVKNRTLADLDLPESPLIVVLESVE 129 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 P N+GA+LRSA A D +I + + L +S+ GA+ +P + S+ Sbjct: 130 KPGNLGAVLRSADASKADAVIVCNPLTDLFNPNLIRSSIGAIFTVPTVACSSQACMNFLK 189 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 DS + ++ A+++G E GL ++ A + + M G + + Sbjct: 190 ERNIKILTAQLQDSAPYYDSDM-RGGTAIVMGTESTGLTDAWRKAADAHIRIPMLGQLDS 248 Query: 263 LNVSNAAAVALYITQNHFA 281 LNVS +AA+ ++ + Sbjct: 249 LNVSVSAAILMFEAVRQRS 267 >gi|303242604|ref|ZP_07329080.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio cellulolyticus CD2] gi|302589861|gb|EFL59633.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio cellulolyticus CD2] Length = 267 Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 62/286 (21%), Positives = 104/286 (36%), Gaps = 24/286 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN IS ++ I +K ++ Q F+ G+ V A Sbjct: 1 MNFISSSQNPVIKEIKALKEK-------------------KYRDQTGLFFIEGIRFVEEA 41 Query: 61 LNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 L L++ K A + + V T+ + + V QG+ Sbjct: 42 LKEKIEISKILVSDKLADVHGGKEILEQLENSNCCNVYTLTNK-LYMEVTDTENPQGILA 100 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 N +VLD + DP N+G I+R+A A G+I +K + + Sbjct: 101 ILNKKSISLESVYDNKNFFLVLDSLQDPGNMGTIIRTADAAGVTGVIVSKGCVDVYNPKV 160 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 +S G+L HIP N+ L++M + G + K + D IA+I+G E Sbjct: 161 LRSTMGSLFHIPICYSENILQTLEEMKNKGIRLCAAHLSGSKNYFELDYKDNIAIIVGNE 220 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G+ + + + M G ++LN S AA + +Y K Sbjct: 221 ANGISDSVAGISNELVRIPMAGKSESLNASVAAGLLMYEVLRLRMK 266 >gi|51894250|ref|YP_076941.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863] gi|51857939|dbj|BAD42097.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863] Length = 246 Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 114/241 (47%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL + R I ++L K A R V+ V + +D + + Sbjct: 5 IEGRNPVLEALRSG-RTINRILVAKGAREGSIREVIALARSQGVIVQEVARERLDAMA-R 62 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ A LD V LL+VLD + DP N+G++LR+A A Sbjct: 63 GRNHQGVIALAAAHRYYDLDEVLERAAASGEDGLLLVLDGIEDPQNLGSLLRTADAAGVH 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I +R + + +AK ++GA+E++P R++N+ L+ + G+ +G ++ + Sbjct: 123 GVIIPERRAVGLTETVAKVSAGAVEYVPVARVTNIARTLEMLKERGYWVVGTHQEADELY 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A+++G+EG+G+ ET L M G + +LN + A A+ LY + Sbjct: 183 YEARLTGPLAVVIGSEGRGMSRLVAETCDFTVRLPMRGHVTSLNAAVAGAILLYEVRRQR 242 Query: 281 A 281 + Sbjct: 243 S 243 >gi|302390940|ref|YP_003826760.1| RNA methyltransferase, TrmH family, group 3 [Acetohalobium arabaticum DSM 5501] gi|302203017|gb|ADL11695.1| RNA methyltransferase, TrmH family, group 3 [Acetohalobium arabaticum DSM 5501] Length = 243 Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 8/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 + G + V AL + R L+ +K V + +D + + Sbjct: 4 IEGRNPVMEALKSERRIDEILIYQNAEGVNELLKKAKAEGIKLKRVAKEKLDNLADSYS- 62 Query: 111 HQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ P+ +LD + L ++LD + DPHN G+ILR+A A G+I Sbjct: 63 HQGVIAFGEPIKYLSLDQLIDKAYNKTDDPLFILLDEIKDPHNFGSILRTADAVGAQGVI 122 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR S ++ + K+++GA+EHIP +++NL A++++ F G +++ Q+ Sbjct: 123 IPKRRSVGLTSAVGKASAGAIEHIPVAQVTNLVRAMEELKENRFWIAGADMEAEGFCYQQ 182 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +++G+EG G+R +E + L M G I +LN + A AV +Y Sbjct: 183 DLTGPLGIVIGSEGAGMRRLVKERCDFLIKLPMKGRINSLNAAVAGAVLMYEALRQRN 240 >gi|188588931|ref|YP_001919654.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum E3 str. Alaska E43] gi|188499212|gb|ACD52348.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum E3 str. Alaska E43] Length = 290 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 73/291 (25%), Positives = 128/291 (43%), Gaps = 17/291 (5%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKM---QSFNQKSRHTS--QPENLFLYGVHTVSAAL 61 +++ K + ++S+ K R N+R KK + + + + + + G + V AL Sbjct: 2 RENTKAGNKRESNREKNRENNRGNKKEINKNRVVENNSYDNSFEEREDIIIGRNAVLEAL 61 Query: 62 NNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 R I L + + L +K V + +D + AVHQG+ Sbjct: 62 KT-ERTIETLYISNSKLEGSINAIISKAKDKKILIKEVDKRKLDSMC-NNAVHQGVIARV 119 Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 P + + + +++LD V DPHN+G+I+R+A F GII KR S S Sbjct: 120 TPYEYSEVSDILELAKKKGENPFIVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSAS 179 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + ++ KS+ GA+EH+ R++NL + ++ G G +++ Q A+ Sbjct: 180 VTTMVYKSSVGAIEHVKVARVTNLNSVIDELKEKGIWVYGTDIRAEEYSYQTDFGGPCAI 239 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 I+G EGKG+ T + + + M G I +LN S A + +Y K Sbjct: 240 IIGNEGKGISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMYEVLKGRLK 290 >gi|167464658|ref|ZP_02329747.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381394|ref|ZP_08055393.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154621|gb|EFX46896.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 272 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 100/268 (37%), Gaps = 3/268 (1%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 +++ Y + K+ + + ++ + G+H V AL++ + + ++ + Sbjct: 1 MQNPTYEIRSIRNPKVKEWAGLLDR-KGRNRQGKFLIEGIHLVEEALHSNA-PVQTIVYS 58 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134 + V + K E A+ S L L Sbjct: 59 LEKEFPHELYKKFSSHADWIGVSRAVLQKCSDTETPQGIFAVVRKSEQSLELITAEEWDL 118 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++V+D V DP N+G I+RSA A I+ + + +S G+L H+P I Sbjct: 119 VVVVDGVQDPGNLGTIIRSADAVGASAIVLGRGTVDIYNPKAIRSTMGSLFHLPVIEADL 178 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + + + ++K + +I+G EGKG + E AT + Sbjct: 179 ADLLPKAVKAGIQV-LCTDLKAEKNCYEIDFTIPTWIIVGNEGKGTSREAGELATQSMII 237 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFAK 282 M G ++LNV+ AA V L+ K Sbjct: 238 PMKGHAESLNVAMAATVLLFEASRQRMK 265 >gi|220928862|ref|YP_002505771.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulolyticum H10] gi|219999190|gb|ACL75791.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulolyticum H10] Length = 269 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 59/282 (20%), Positives = 109/282 (38%), Gaps = 23/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN I ++ I +K H ++ F+ G+ VS A Sbjct: 1 MNYIQSSQNSTIKDIKSLHLK-------------------KNRDAHGLYFVEGIRFVSDA 41 Query: 61 LNNPSRKIFQLLATK-NALARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALE 117 ++N +++ K L + VP + ++ + QG+ Sbjct: 42 IDNGQSIAKIIISEKLEGLNGGSELIEKVKGACSDISLVPEKIFREVSDTQ-TPQGILAV 100 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + +++LD + DP N G I+R+A A ++ +K S + Sbjct: 101 IKKNKYSFDKVITEGSSVVILDCLQDPGNAGTIIRTADAAGISAVLMSKGCVDLYSPKVL 160 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S G++ HIP N+T+ ++ + ++ I K QE + A+I+G E Sbjct: 161 RSTMGSVFHIPIFEGLNITEIIRVLKQNDYKVIASHLSGKNNYFQEDLTGRSAIIVGNEA 220 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 G+ +T A S+ + MPG ++LN S AA+V +Y Sbjct: 221 NGISDETAYMADSLVKIPMPGKAESLNASVAASVMIYEIVRQ 262 >gi|253575250|ref|ZP_04852588.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845247|gb|EES73257.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str. D14] Length = 263 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 102/260 (39%), Gaps = 5/260 (1%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 L + K+ +K ++ + + G+H V AL + + + + ++ Sbjct: 4 LSAQNPRVKEWAGLLEK-KNRDKQGKYLIEGIHLVQEALQSRAD-VECVCYDLEHGIPVE 61 Query: 83 WDANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 A V V I K ++ A+ + + L++VLD Sbjct: 62 LQAAASAGLDVDWIGVSAAVIAKCSDTKSPQPVFAVVRKDRGTVAPLLAKERSLVVVLDG 121 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+RSA A + DG+I + + ++ G+L H+P + + L Sbjct: 122 VQDPGNVGTIIRSADAVAADGVIVGAGCADIYGPKVLRATMGSLFHLPVVHADLA-EVLP 180 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + G + G S + + L+ G+EG GL P +E + M G Sbjct: 181 QAKQRGIRLAGTSLQAAANCFAYDFTQPVWLLFGSEGGGLSPAVRELMDDGLLIPMRGQA 240 Query: 261 KALNVSNAAAVALYITQNHF 280 ++LNV+ AA+V LY Sbjct: 241 ESLNVAMAASVLLYEAMRQR 260 >gi|260752268|ref|YP_003225161.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551631|gb|ACV74577.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 268 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 47/260 (18%), Positives = 93/260 (35%), Gaps = 5/260 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K+++S K +H + G+ ++ A ++ A +A L Sbjct: 9 SNPLIKRVRSLRDK-KHRREEGLFLAEGLRILTEAREAGFIPVYIFFAADSAAHPLVQQL 67 Query: 86 NLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + K+ GK+ + + + L + R + + +V + Sbjct: 68 IEAVEDKGGEAIETSRDILHKLSGKDNPQTVIGVFESFTLPLSSIDRRQAPIWLVAQSLR 127 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G +LR+ A G+I S ++ GAL D L + Sbjct: 128 DPGNLGTLLRTGDAVGAGGLILIDDCVDPFSVEAVRATMGALFTQKIATARWE-DFLVWL 186 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 IG S + + ++ +++G E +GL ++ + + M G + Sbjct: 187 RQGEGDLIGTSLRATQDYQEPRYQTPSFVLVGNEAQGLPDSYEDACDHLVKIPMMGRADS 246 Query: 263 LNVSNAAAVALYITQNHFAK 282 LNV+ A A+ Y N K Sbjct: 247 LNVAVAGAIMAYEVLNQQRK 266 >gi|219853507|ref|YP_002470629.1| hypothetical protein CKR_0164 [Clostridium kluyveri NBRC 12016] gi|219567231|dbj|BAH05215.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 256 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 65/252 (25%), Positives = 114/252 (45%), Gaps = 11/252 (4%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVP 97 + Q + G ++V ALN+ + I Q+ + + VK V Sbjct: 2 KSEPQFREDLIEGRNSVMEALNSNNVTIEQIFVLDGNMSGSINTIFAIAKEKHIVVKKVD 61 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAI 150 + +D+I + VHQG+ + P L+ + + +++LD + DPHN GAI Sbjct: 62 KRKLDRIS-QTGVHQGVIAKVIPYKYCELEDILDYASERGESPFIIILDEIQDPHNFGAI 120 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A GII KR + + + KS++GA+E++ +++NL ++K+ Sbjct: 121 IRTAEVSGVHGIIIPKRRNVGITPTVYKSSAGAVEYMKICKVTNLNTIIEKLKKENIWIY 180 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + N IALI+G+EGKG+ T++ + + M G I +LN S AA Sbjct: 181 GADMTGENYCFDVDFNSSIALIIGSEGKGISKLTKQKCDKLVKIPMMGNISSLNASVAAG 240 Query: 271 VALYITQNHFAK 282 + +Y K Sbjct: 241 MLMYEILKQKIK 252 >gi|149177691|ref|ZP_01856292.1| YacO [Planctomyces maris DSM 8797] gi|148843509|gb|EDL57871.1| YacO [Planctomyces maris DSM 8797] Length = 261 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 51/259 (19%), Positives = 109/259 (42%), Gaps = 8/259 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 K + + +++G + V L +++L + + + Sbjct: 2 VGKPSKLKKNKPLLGNHQKCWIWGRNAVRETLFAGFWPMYELHLSDHLKSEEIEQLEQQA 61 Query: 90 P---FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS----QLLMVLDHVN 142 PV + + + + + HQG+ + AP +++ L ++LD + Sbjct: 62 ARSTIPVFISTDKELTQKC-RASDHQGMIAKMAPFPYTSIELFNQQEITSPLFLILDRIQ 120 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N GAI+RSA DGI + ++++ ++++GA+ H+P ++ ++L + Sbjct: 121 DPFNFGAIIRSAEIMGADGIFSGTHEQCEVTSLVCRTSAGAVNHVPLVQATDLVSLCRDW 180 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G +G + + + L A+I+G EG G+ P+ Q T + + G ++ Sbjct: 181 KQNGINIVGTAMQASEKLNDYNFQQPTAVIVGNEGTGISPELQAECTHLVRIPQQGKTES 240 Query: 263 LNVSNAAAVALYITQNHFA 281 LNV+ +A++ LY Sbjct: 241 LNVAVSASILLYEASRQRN 259 >gi|110633438|ref|YP_673646.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1] gi|110284422|gb|ABG62481.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1] Length = 276 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 135/276 (48%), Positives = 190/276 (68%), Gaps = 3/276 (1%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 +K + KDSHYA+LRR HR + + N+++ + LYG+HTV AA++NP+R Sbjct: 2 SDHKKTGTPKDSHYARLRRAHR---ERTAPNERAGADLPEGIVRLYGLHTVRAAIDNPAR 58 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 I Q+L T+NA RL PFPV+ V P+ ID +VG +AVHQG+ +E Sbjct: 59 SIRQMLVTRNAAQRLGIADPSTLPFPVEIVEPKAIDALVGADAVHQGVLVEATARTPKPF 118 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + ++ L++VLD V DPHN+GAI+RSAVAF D ++TT R+SP+ES VLAK+ASGALEH Sbjct: 119 SGLEDASLVLVLDQVTDPHNVGAIMRSAVAFGADALVTTARHSPAESGVLAKAASGALEH 178 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 I +I + NL +A++++H+ GF T+GL S+ + LE+ ++ KIAL+LG+EGKGLR KT+E Sbjct: 179 IDHIEVRNLANAIEELHAAGFLTVGLDSEGPQRLEKTLQGKKIALVLGSEGKGLRQKTRE 238 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 T ++A L MPG I +LNVSNAAAVALYI + A+ Sbjct: 239 TVRALARLDMPGAIHSLNVSNAAAVALYIARRSLAE 274 >gi|28212189|ref|NP_783133.1| 23S rRNA methyltransferase [Clostridium tetani E88] gi|28204633|gb|AAO37070.1| 23S rRNA methyltransferase [Clostridium tetani E88] Length = 245 Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 6/240 (2%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKI 104 + G + V AL + L++ N ++ +L P+K V + +D+I Sbjct: 2 REDLIIGRNAVVEALESHKTLESILISKGNNKGTINKIISLAKENRIPIKNVDKKKLDEI 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E A T + + +++LD + DPHN GAI+R+A F D Sbjct: 62 SEGENHQGVAAYTTPYKYYSVEEILESSKGKAPFILILDEIQDPHNFGAIIRTAEVFGVD 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII KR S + ++ KS+ GA+EH+ +++N+ + + G + + + Sbjct: 122 GIIIPKRRSVGITPIVYKSSVGAVEHVKIAKVNNINSTIDFLKENNIWIYGADMATDRYI 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E IAL++G+EGKG+ T+E + + M G I +LN S A + +Y Sbjct: 182 YSENLKGPIALVVGSEGKGISKLTKEKCDILVKIPMSGQINSLNASVAGGIVMYEISRQR 241 >gi|150016448|ref|YP_001308702.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB 8052] gi|149902913|gb|ABR33746.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB 8052] Length = 260 Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 105/258 (40%), Gaps = 8/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + + +K + ++ ++ ++ + G V A + L+ T++A ++D Sbjct: 6 SKENNLFKNTKKLKER-KNRTKTSRYIIEGFRLVQEAFKA-KVDVDYLIVTEDAHDKVDE 63 Query: 84 DANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + + +++ E LA+ + D ++ D V Sbjct: 64 FLGKYINGEIKIYEISSNLFKELISTENPQGILAVIKMNTMESKFDGD----FYLLCDKV 119 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+A A II TK + +S G++ +IP +++ Sbjct: 120 QDPGNLGTIIRTAHAAGVQEIILTKGTVDIYNEKTIRSTMGSIFYIPIYYDDENLSLVKE 179 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + GF + S D+ K Q ++ L +G EG G+ + E A + + MPG + Sbjct: 180 LKGKGFNLVVTSLDTDKNFFQADLRGRVLLTVGNEGNGVSREVLEMADTKVKIPMPGNAE 239 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV+ A++V +Y Sbjct: 240 SLNVAVASSVIMYEKVRQ 257 >gi|325954534|ref|YP_004238194.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922] gi|323437152|gb|ADX67616.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922] Length = 257 Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 94/255 (36%), Gaps = 5/255 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K + +KSR + + G+ A+ R + + ++ Sbjct: 7 QNPKIKNLLKLQEKSRERKKQNTFVVEGLQENRLAIEGGFRAL-EFYICEDIFDDNLPL- 64 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + V +KI ++ + + + + + + L++VL+ V P Sbjct: 65 ---ENGKIYKVNKPVFEKIAYRKTTGGIVGVYATKENNLSGVELPENALILVLEAVEKPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAILR+A D +I + + +S+ G L S ++ Sbjct: 122 NLGAILRTADGAKVDAVIVCDETVDFYNPNVIRSSVGTLFTNQIASGSKEEVLNFLKNNN 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 D+ K L + + A++LG E GL + + + + M G + +LNV Sbjct: 182 IQIVSTFLRDNTKSLYEMDFSSSSAIVLGTEATGLSDFWADESDVLIKIPMLGKVDSLNV 241 Query: 266 SNAAAVALYITQNHF 280 SNAAA+ +Y Sbjct: 242 SNAAAICVYEAVRQR 256 >gi|296133375|ref|YP_003640622.1| RNA methyltransferase, TrmH family, group 3 [Thermincola sp. JR] gi|296031953|gb|ADG82721.1| RNA methyltransferase, TrmH family, group 3 [Thermincola potens JR] Length = 268 Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 56/281 (19%), Positives = 105/281 (37%), Gaps = 20/281 (7%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 I+ K+ +I L+ + ++ + + G+ V AL Sbjct: 3 ETITSAKNMRIMYLQSL-------------------LQKKYRDREGKFLVEGLRFVQEAL 43 Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 + + +LA + + +P P+ + Q KI E AL Sbjct: 44 QSGADIEELILAAGVLEKNPSFQSIIPDKIPITIIADQLFKKITDTETPQGIAALVRKKE 103 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 V + L+++D V DP N+G I+R+A A G+ K + + ++ Sbjct: 104 FRAEDLFVVANPFLLIIDKVQDPGNLGTIIRTADAAGVTGVALVKGTADLYNPKTLRATM 163 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGL 240 G++ H+P I ++ +A G + I ++ +AL++G E +G Sbjct: 164 GSVFHVPIINFDSIEEACHLAKKHGLKLIVTDISKDSSSYLAVDYSEPVALVVGNEARGA 223 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 E + + MPG ++LNVS AA + L+ A Sbjct: 224 SSFAIENSDYRVAIKMPGKAESLNVSVAAGIILFEAARQRA 264 >gi|309389950|gb|ADO77830.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium praevalens DSM 2228] Length = 246 Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 116/242 (47%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL RKI ++ + A++ D P+ + Q +++ + Sbjct: 4 IEGRNPVYEALK-GKRKIHRIFIQEEITAKIIEDILELAAEKNIPISRISSQKLNE-SAQ 61 Query: 108 EAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ E L S L+ L+++LD + DPHN GAI+R+A A D Sbjct: 62 SHAHQGVIAEADALESYQLEDVIEIKAQKDGDSLVVILDEIKDPHNFGAIIRTAYAAGAD 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ +R + + V+ K+A+GA EH+P +++SN+ A++ + F G + + + Sbjct: 122 AVVYQERRAVGITPVVLKAAAGAAEHLPLVQVSNINYAIRDLKEANFWIAGADAAADQTH 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + I L++G+EG GLR +E + + M G + +LN S AA+V +Y Sbjct: 182 FEADFGGSIGLVIGSEGSGLRRLVRENCDFLVKIPMSGKLGSLNASVAASVIIYEIFRQR 241 Query: 281 AK 282 K Sbjct: 242 GK 243 >gi|302878484|ref|YP_003847048.1| RNA methyltransferase, TrmH family, group 3 [Gallionella capsiferriformans ES-2] gi|302581273|gb|ADL55284.1| RNA methyltransferase, TrmH family, group 3 [Gallionella capsiferriformans ES-2] Length = 247 Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 117/240 (48%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V++ + + ++ ++ R V V +D + G Sbjct: 6 LIYGFHAVTSRIRQNPEGVMEIYLQSQRQDQRMRDLIALAELSGVRVIPVDSARLDGMAG 65 Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+A LS L+ + LL+VLD + DPHN+GA LRSA AF Sbjct: 66 -GARHQGVAARVDAARRVQHLSDVLETLTEPPLLLVLDGIQDPHNLGACLRSADAFGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + +A + K A GA E +PYI ++NL L+++ G +G + ++K+ L Sbjct: 125 VIAPKDRAVGITATVEKVACGAAETVPYITVTNLARTLRELKDQGIWVVGAAGEAKQDLH 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +A++LGAEG+GLR T ET + + M G +++LNVS + + L+ + + Sbjct: 185 SFKHTGPLAIVLGAEGEGLRRLTMETCDELVRIPMLGSVESLNVSVSTGICLFEARRQRS 244 >gi|182420073|ref|ZP_02951307.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum 5521] gi|237666689|ref|ZP_04526674.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376110|gb|EDT73697.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum 5521] gi|237657888|gb|EEP55443.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum E4 str. BoNT E BL5262] Length = 277 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 68/283 (24%), Positives = 118/283 (41%), Gaps = 18/283 (6%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 K + K R+N K KS + + G + V AL R I Sbjct: 3 NKPKKTSNLTVKKDRKNEPLKKN------KSITCQEEREDIVIGRNAVMEALK-GDRTIE 55 Query: 70 QLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 + + N L +K V + +D + E HQG+ + P + Sbjct: 56 AIYVSNNKLEGSINAIMGMAKDQKILIKEVDKRKLDSMCDGE-THQGVIAKVTPFKYSEV 114 Query: 127 -------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + + +++LD V DPHN+G+I R+A F GII KR S S +A + KS Sbjct: 115 SDIFELAEQKGEAPFIVILDEVEDPHNLGSIARTAELFGVHGIIIPKRRSASVTATVYKS 174 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 + GA+EH+ +++N+ ++++ G G +++ + + AL++G EG+G Sbjct: 175 SVGAIEHVKVAKVNNINSTIEELKEKGVWIYGADIRAEEYSHEVDYSGPCALVIGNEGRG 234 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + T + + + M G I +LN S A + +Y K Sbjct: 235 MSKLTVQKCDKLIKIPMVGKINSLNASVAGGIMMYEVLKGRFK 277 >gi|56552224|ref|YP_163063.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis ZM4] gi|241761703|ref|ZP_04759790.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56543798|gb|AAV89952.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis ZM4] gi|241374011|gb|EER63544.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 268 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 47/260 (18%), Positives = 94/260 (36%), Gaps = 5/260 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K+++S K +H + G+ ++ A ++ A +A L Sbjct: 9 SNPLIKRVRSLRDK-KHRREEGLFLAEGLRILTEAREAGFIPVYIFFAADSAAHPLVQQL 67 Query: 86 NLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + + K+ GK+ + + + L + R + + +V + Sbjct: 68 IEAVEDNGGEAIETSRDILHKLSGKDNPQTVIGVFESFTLPLSSIDRRQAPIWLVAQSLR 127 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G +LR+ A G+I S ++ GAL D L + Sbjct: 128 DPGNLGTLLRTGDAVGAGGLILIDDCVDPFSVEAVRATMGALFTQKIATARWE-DFLVWL 186 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 IG S + + ++ +++G E +GL ++ + + M G + Sbjct: 187 RQGEGDLIGTSLRATQDYQEPRYQTPSFVLVGNEAQGLPDSYEDACDHLVKIPMMGRADS 246 Query: 263 LNVSNAAAVALYITQNHFAK 282 LNV+ A A+ Y N K Sbjct: 247 LNVAVAGAIMAYEVLNQQRK 266 >gi|239832139|ref|ZP_04680468.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum intermedium LMG 3301] gi|239824406|gb|EEQ95974.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum intermedium LMG 3301] Length = 303 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 140/288 (48%), Positives = 188/288 (65%), Gaps = 13/288 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52 M + ++ K DSHYA+LRR HRD K + + LY Sbjct: 18 MTDQNSPRTPK-----DSHYARLRRQHRDQKAGTEGKSPRKPQRPSISASAVTEGTVRLY 72 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+HTV AA+ NP R+I ++LAT+N ARL+ PFPV+ V P+ IDK G EAVHQ Sbjct: 73 GLHTVRAAVENPERRILRMLATRNGFARLEIGEAESLPFPVEIVEPRDIDKETGSEAVHQ 132 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G+ +E PL + L +++S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E Sbjct: 133 GVMIEAEPLRARKLSELKDSPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 192 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + VLAK+ASGALE I +I + NL +A++++HS GFQTIGL S+ +E + +IAL+ Sbjct: 193 TGVLAKAASGALELISHIEVRNLAEAIEELHSLGFQTIGLDSEGPLEMEATLSGGRIALV 252 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 253 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300 >gi|304405638|ref|ZP_07387297.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus curdlanolyticus YK9] gi|304345677|gb|EFM11512.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus curdlanolyticus YK9] Length = 281 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 62/277 (22%), Positives = 117/277 (42%), Gaps = 21/277 (7%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPEN-----------LFLYGVHTVSAALNNPSRKIFQLL 72 RN+ ++ Q + + + + G H V AL + R+I ++ Sbjct: 3 SRNNPYRQERQRERSSGGYRTTEQVQAEQATADNDGEIIAGKHPVLEALRSG-REINKVW 61 Query: 73 ATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128 + + L H V+ + +D + G+ A +A A + Sbjct: 62 IAEGSQKHLTAPIVAEAKQHGIIVQFADKRKLDSMAGEVAHQGVIAQAAAYRYYEVEEIL 121 Query: 129 -----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + L++LD + DPHN+G+ILR+A G+I KR S +A ++K ++GA Sbjct: 122 AAAKAKGETPFLLLLDEIEDPHNLGSILRTAECTGVHGVIIPKRRSVGLTATVSKISAGA 181 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 E++P R++NL ++ + G G +++ + + + + L++G E KG+ Sbjct: 182 AEYVPVARVTNLAQTIETLKEQGVWIAGADVAAEQDVYRTKFDMPLGLVIGNESKGMGRL 241 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +E + L M G + +LN S AA V +Y Sbjct: 242 IREKCDFLIKLPMAGQLNSLNASVAAGVLMYEVLRQR 278 >gi|315649427|ref|ZP_07902515.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453] gi|315275203|gb|EFU38573.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453] Length = 267 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 100/259 (38%), Gaps = 3/259 (1%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RL 81 L + K +K +H + + G+H V AL++ + + L Sbjct: 4 LSPQNARVKGWAQLQEK-KHRDKQNKYVVEGIHLVQEALSSGADIECIAYDMDKGIPLEL 62 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + V I K+ + A+ +R + L++VLD + Sbjct: 63 RQIPDRGQGAEWIGVSHAVISKVSDTPSPQPVFAVVRKEARQWQDLIMRENGLVIVLDGL 122 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R A A G+I + + + +S G+L H+P + L L + Sbjct: 123 QDPGNVGTIIRGADAVGAAGVILGRGCADLYNPKTLRSTMGSLFHLPVLEGELL-SILPE 181 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G + + + K+ + +++G+EG+G+ P+ + MPG + Sbjct: 182 ARERGARLVTTMLEGKRSCFEYDFRGTSWIVIGSEGRGVSPEVAAIVDDAIRIPMPGQAE 241 Query: 262 ALNVSNAAAVALYITQNHF 280 +LN + AA+V +Y Sbjct: 242 SLNAAMAASVLMYEALRQR 260 >gi|302039376|ref|YP_003799698.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Nitrospira defluvii] gi|300607440|emb|CBK43773.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Nitrospira defluvii] Length = 246 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 120/240 (50%), Gaps = 9/240 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG+H V AL R I +LL + PV+ P +D++V Sbjct: 2 IYGLHAVREALRAGVRPIQRLLVLGTDRQFGEISRLAREQRVPVRVEPRAALDRLV-PSG 60 Query: 110 VHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ A D + + LL++LD V DPHN+GAILR+A A G+ Sbjct: 61 HHQGVVGVVAAKAYAEPDDILASAQVEGQTPLLVLLDGVEDPHNLGAILRTAEASGVQGV 120 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 +R + ++V+AK+++GA++++P R+ NL+ ++++ G L +++ K + Sbjct: 121 FIPERRAVGLTSVVAKASAGAVDYMPVGRVPNLSRLIERLQDAGIWVYALDAEAPKAYTE 180 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + +AL+ G EG G+RP ++ AH+ M G + +LNVS +AA+ LY + Sbjct: 181 LDFSGPVALVFGGEGTGVRPGVRDACDEAAHIPMLGKVSSLNVSASAAIVLYEALRQRRE 240 >gi|149372541|ref|ZP_01891653.1| putative rRNA methylase [unidentified eubacterium SCB49] gi|149354584|gb|EDM43148.1| putative rRNA methylase [unidentified eubacterium SCB49] Length = 263 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 99/256 (38%), Gaps = 4/256 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ KK+ + KSR + + G VS A+ +I LL +A L+ Sbjct: 9 NNPLIKKINALTDKSRERKKQGVFIVEGAREVSLAIK-GHHEILTLLFCPE-IADLNALP 66 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNSQLLMVLDHVNDP 144 N+ +V KI + +A+ + L + + L+++ + P Sbjct: 67 NVADSVEKISVSLDVYQKIAYRATTEGVIAIVKNSKTTLDALVFPKQNPLILIAEAPEKP 126 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIGA+LR+A A D ++ +S + +++ D + + Sbjct: 127 GNIGALLRTADAAHVDAVLI-ANPRTDLYNPNIIRSSVGCVFTNQVAMASSEDIIAFLKK 185 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 +P + A+++G E GL ++ +T+ H+ M G I +LN Sbjct: 186 NNISIYSAILQESQPYHTQDFTTGCAIVVGTEATGLSQAWRDASTANIHIPMQGEIDSLN 245 Query: 265 VSNAAAVALYITQNHF 280 VS AAAV L+ + Sbjct: 246 VSVAAAVLLFEAKRQR 261 >gi|148559141|ref|YP_001259170.1| RNA methyltransferase [Brucella ovis ATCC 25840] gi|148370398|gb|ABQ60377.1| RNA methyltransferase, TrmH family, group 3 [Brucella ovis ATCC 25840] Length = 303 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 140/288 (48%), Positives = 186/288 (64%), Gaps = 13/288 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52 M + ++ K DSHYA+LRR HRD K + + LY Sbjct: 18 MTDQNSPRTPK-----DSHYARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLY 72 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+HTV AA+ NP RKI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQ Sbjct: 73 GLHTVRAAVENPQRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQ 132 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G+ +E PL + L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E Sbjct: 133 GVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 192 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+ Sbjct: 193 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEVTLSGNRIALV 252 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 253 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300 >gi|251795157|ref|YP_003009888.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. JDR-2] gi|247542783|gb|ACS99801.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. JDR-2] Length = 264 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 96/256 (37%), Gaps = 3/256 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K+ S K ++ + + GVH V A + + + ++ + Sbjct: 10 QNERVKQWASLLDK-KYRDRTGLFIIEGVHLVQEAFKSSAAVQCVVYNSERGIPHELEQL 68 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 Q + K G + A+ L RN+ L++VLD V DP Sbjct: 69 AREGGAEWVQATTQVMAKCTGTDTPPPVFAV-LEKLKRDDTALFRNNSLVVVLDGVRDPG 127 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+RSA A D ++ K + +S G+L H+P I + L + S Sbjct: 128 NVGTIIRSADAVGADAVVLGKGSVDLYNPKTVRSTMGSLFHLPIIEADLA-ELLPEAQSK 186 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + +G S + L++G E +GL + + M G ++LNV Sbjct: 187 GIKLVGTSLQATHTCYTYDWTAGTWLLMGNESEGLSDAVRLAVDESVIIPMQGEAESLNV 246 Query: 266 SNAAAVALYITQNHFA 281 + AA V LY Sbjct: 247 AMAATVLLYEAVRQRK 262 >gi|260460674|ref|ZP_05808924.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium opportunistum WSM2075] gi|259033251|gb|EEW34512.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium opportunistum WSM2075] Length = 282 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 147/275 (53%), Positives = 186/275 (67%), Gaps = 6/275 (2%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHT------SQPENLFLYGVHTVSAALN 62 S K + KD+HYAKLRR RD K + K R + + LYG+HTV AAL+ Sbjct: 2 SNKTNTPKDTHYAKLRRAFRDEKSGGAPAFKPRQPVPPGENAGDGLVRLYGLHTVRAALD 61 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 NP R+I ++L T+NA RL+ PF + V P+ IDKI G +AVHQG+ +E PL Sbjct: 62 NPRRRIKKMLVTRNAAERLEIADLAALPFSAELVEPRDIDKITGSDAVHQGVLIEAEPLK 121 Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 LDA+ +++L++VLD V DPHN+GAILRSAVAF +ITT R+SP ES VLAKSASG Sbjct: 122 PKRLDALGDTKLVLVLDQVTDPHNVGAILRSAVAFGAGALITTARHSPQESGVLAKSASG 181 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ALEHI I + NL DAL ++H GFQTIGL SD LE D++AL+LGAEGKGLR Sbjct: 182 ALEHIDQIEVKNLADALGQLHEAGFQTIGLDSDGPAELETSFAGDRVALVLGAEGKGLRQ 241 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 KT+ET T++A L MPG I++LNVSNAAAV+LY + Sbjct: 242 KTRETVTTLARLDMPGAIRSLNVSNAAAVSLYAAR 276 >gi|326409274|gb|ADZ66339.1| TrmH family RNA methyltransferase [Brucella melitensis M28] gi|326538984|gb|ADZ87199.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis M5-90] Length = 303 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 140/288 (48%), Positives = 186/288 (64%), Gaps = 13/288 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52 M + ++ K DSHYA+LRR HRD K + + LY Sbjct: 18 MTDQNSPRTPK-----DSHYARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLY 72 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+HTV AA+ NP RKI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQ Sbjct: 73 GLHTVRAAVENPQRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQ 132 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G+ +E PL + L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E Sbjct: 133 GVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 192 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+ Sbjct: 193 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 252 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 253 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300 >gi|306840281|ref|ZP_07473055.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO2] gi|306289808|gb|EFM60990.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO2] Length = 286 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 140/288 (48%), Positives = 186/288 (64%), Gaps = 13/288 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52 M + ++ K DSHYA+LRR HRD K + + LY Sbjct: 1 MTDQNSPRTPK-----DSHYARLRRQHRDQKAGAEGKSPRKPQRPTIAASAVAEGTVRLY 55 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+HTV AA+ NP RKI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQ Sbjct: 56 GLHTVRAAVENPQRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQ 115 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G+ +E PL + L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E Sbjct: 116 GVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 175 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+ Sbjct: 176 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 235 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 236 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283 >gi|317126837|ref|YP_004093119.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cellulosilyticus DSM 2522] gi|315471785|gb|ADU28388.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cellulosilyticus DSM 2522] Length = 252 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 119/245 (48%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102 E +++G + V AL R I ++ + +L + + + VP + +D Sbjct: 3 QELEYIFGKNPVLEALR-GKRPINKIWIAEGSLRGPMIQVLELSKEKKINTQIVPKKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V K+ HQG+ + A +D ++LD + DPHN+G+ILR+A Sbjct: 62 QMVPKDQQHQGVIAQVAAYEFQEIDVLFERARQKNEQPFFLLLDELEDPHNLGSILRTAD 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GII KR S + +AK+++GA+EH+P R++NL + ++ G +G + Sbjct: 122 AVGAHGIIVPKRRSVGLTYTVAKASAGAIEHVPVTRVTNLARTMDELKKEGLWFVGTDAK 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ + + + L++G+EG+G+ +E + + + G + +LN S AA++ +Y Sbjct: 182 GEQDYREVDLDMPVVLVIGSEGRGISRLVKEKCDFLVQIPLAGKVTSLNASVAASLLMYE 241 Query: 276 TQNHF 280 Sbjct: 242 VYRRR 246 >gi|225627720|ref|ZP_03785757.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti str. Cudo] gi|225617725|gb|EEH14770.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti str. Cudo] Length = 303 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 140/288 (48%), Positives = 186/288 (64%), Gaps = 13/288 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52 M + ++ K DSHYA+LRR HRD K + + LY Sbjct: 18 MTDQNSPRTPK-----DSHYARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLY 72 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+HTV AA+ NP RKI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQ Sbjct: 73 GLHTVRAAVENPQRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQ 132 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G+ +E PL + L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E Sbjct: 133 GVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 192 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+ Sbjct: 193 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 252 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 253 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300 >gi|23502131|ref|NP_698258.1| RNA methyltransferase [Brucella suis 1330] gi|161619208|ref|YP_001593095.1| RNA methyltransferase [Brucella canis ATCC 23365] gi|225852749|ref|YP_002732982.1| TrmH family RNA methyltransferase [Brucella melitensis ATCC 23457] gi|254693953|ref|ZP_05155781.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 3 str. Tulya] gi|254701991|ref|ZP_05163819.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis bv. 5 str. 513] gi|254704533|ref|ZP_05166361.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis bv. 3 str. 686] gi|254706572|ref|ZP_05168400.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis M163/99/10] gi|254710319|ref|ZP_05172130.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis B2/94] gi|254714316|ref|ZP_05176127.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti M644/93/1] gi|254717753|ref|ZP_05179564.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti M13/05/1] gi|256031813|ref|ZP_05445427.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis M292/94/1] gi|256061333|ref|ZP_05451477.1| RNA methyltransferase, TrmH family, group 3 [Brucella neotomae 5K33] gi|256113812|ref|ZP_05454605.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis bv. 3 str. Ether] gi|256159988|ref|ZP_05457701.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti M490/95/1] gi|256255213|ref|ZP_05460749.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti B1/94] gi|256263765|ref|ZP_05466297.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|256369676|ref|YP_003107186.1| RNA methyltransferase, TrmH family, group 3 [Brucella microti CCM 4915] gi|260168947|ref|ZP_05755758.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. F5/99] gi|260566224|ref|ZP_05836694.1| RNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261214245|ref|ZP_05928526.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|261219597|ref|ZP_05933878.1| RNA methyltransferase [Brucella ceti M13/05/1] gi|261222409|ref|ZP_05936690.1| RNA methyltransferase [Brucella ceti B1/94] gi|261314030|ref|ZP_05953227.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261317883|ref|ZP_05957080.1| RNA methyltransferase [Brucella pinnipedialis B2/94] gi|261322092|ref|ZP_05961289.1| RNA methyltransferase [Brucella ceti M644/93/1] gi|261325334|ref|ZP_05964531.1| RNA methyltransferase [Brucella neotomae 5K33] gi|261752558|ref|ZP_05996267.1| RNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261755216|ref|ZP_05998925.1| RNA methyltransferase [Brucella suis bv. 3 str. 686] gi|261758439|ref|ZP_06002148.1| RNA methyltransferase [Brucella sp. F5/99] gi|265988911|ref|ZP_06101468.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|265995162|ref|ZP_06107719.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|265998376|ref|ZP_06110933.1| RNA methyltransferase [Brucella ceti M490/95/1] gi|294852588|ref|ZP_06793261.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] gi|306844157|ref|ZP_07476750.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO1] gi|23348093|gb|AAN30173.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis 1330] gi|161336019|gb|ABX62324.1| RNA methyltransferase, TrmH family, group 3 [Brucella canis ATCC 23365] gi|225641114|gb|ACO01028.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis ATCC 23457] gi|255999838|gb|ACU48237.1| RNA methyltransferase, TrmH family, group 3 [Brucella microti CCM 4915] gi|260155742|gb|EEW90822.1| RNA methyltransferase [Brucella suis bv. 4 str. 40] gi|260915852|gb|EEX82713.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|260920993|gb|EEX87646.1| RNA methyltransferase [Brucella ceti B1/94] gi|260924686|gb|EEX91254.1| RNA methyltransferase [Brucella ceti M13/05/1] gi|261294782|gb|EEX98278.1| RNA methyltransferase [Brucella ceti M644/93/1] gi|261297106|gb|EEY00603.1| RNA methyltransferase [Brucella pinnipedialis B2/94] gi|261301314|gb|EEY04811.1| RNA methyltransferase [Brucella neotomae 5K33] gi|261303056|gb|EEY06553.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261738423|gb|EEY26419.1| RNA methyltransferase [Brucella sp. F5/99] gi|261742311|gb|EEY30237.1| RNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261744969|gb|EEY32895.1| RNA methyltransferase [Brucella suis bv. 3 str. 686] gi|262552844|gb|EEZ08834.1| RNA methyltransferase [Brucella ceti M490/95/1] gi|262766275|gb|EEZ12064.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263093865|gb|EEZ17827.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|264661108|gb|EEZ31369.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|294821177|gb|EFG38176.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] gi|306275432|gb|EFM57169.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO1] Length = 286 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 140/288 (48%), Positives = 186/288 (64%), Gaps = 13/288 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52 M + ++ K DSHYA+LRR HRD K + + LY Sbjct: 1 MTDQNSPRTPK-----DSHYARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLY 55 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+HTV AA+ NP RKI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQ Sbjct: 56 GLHTVRAAVENPQRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQ 115 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G+ +E PL + L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E Sbjct: 116 GVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 175 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+ Sbjct: 176 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 235 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 236 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283 >gi|150392179|ref|YP_001322228.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF] gi|149952041|gb|ABR50569.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus metalliredigens QYMF] Length = 248 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 10/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V AL L+A + + V+ V Q +D+I Sbjct: 6 IEGRNPVLEALKAGREIDKLLIAKGAEEGSMKKIIGMAKDQNIIVQYVERQKLDQISESH 65 Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ + A ++ + + +++LD + DPHN+G+I+R+A A DG Sbjct: 66 A-HQGVIAQVAAYEYSDVETILENAQKKGKSPFILILDEIMDPHNLGSIIRTADAVGVDG 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II KR + +AV+AK+++GA+E++P ++SN++ + K+ G G K+ Sbjct: 125 IIIPKRRAVGLTAVVAKTSAGAIEYVPVAKVSNISQTIDKLKEKGVWVAGADMKGKQLHF 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +AL++G EG G+ +E + L M G + +LN S AAAV +Y Sbjct: 185 EADFKGALALVIGGEGSGISRLVKEKCDFLVKLPMAGQVSSLNASVAAAVLMYEAYRQRI 244 >gi|256044897|ref|ZP_05447801.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|260565501|ref|ZP_05835985.1| RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|265991325|ref|ZP_06103882.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|260151569|gb|EEW86663.1| RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|263002109|gb|EEZ14684.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] Length = 286 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 139/288 (48%), Positives = 185/288 (64%), Gaps = 13/288 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52 M + ++ K DSHYA+LRR HRD K + + LY Sbjct: 1 MTDQNSPRTPK-----DSHYARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLY 55 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+HTV AA+ NP RKI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQ Sbjct: 56 GLHTVRAAVENPQRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQ 115 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G+ +E PL + L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT +SP E Sbjct: 116 GVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSHHSPQE 175 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+ Sbjct: 176 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 235 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 236 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283 >gi|17987024|ref|NP_539658.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|17982677|gb|AAL51922.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] Length = 303 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 139/288 (48%), Positives = 185/288 (64%), Gaps = 13/288 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52 M + ++ K DSHYA+LRR HRD K + + LY Sbjct: 18 MTDQNSPRTPK-----DSHYARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLY 72 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+HTV AA+ NP RKI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQ Sbjct: 73 GLHTVRAAVENPQRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQ 132 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G+ +E PL + L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT +SP E Sbjct: 133 GVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSHHSPQE 192 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+ Sbjct: 193 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 252 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 253 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300 >gi|258512689|ref|YP_003186123.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479415|gb|ACV59734.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 255 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 73/255 (28%), Positives = 125/255 (49%), Gaps = 10/255 (3%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF 91 M+ ++ + + G H V AAL + R + ++ + A Sbjct: 5 MRDGARRRSAQGEEAADLVKGRHAVLAALES-ERPVNKVWVAEGASGMDAIVAKARSRGV 63 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHN 146 V+ VP +D++ + HQG+ + AP LD + L++VLD + DPHN Sbjct: 64 VVQFVPRSRLDEMA---SAHQGVIAQVAPYAYVDLDDVIRRDTGFAPLVVVLDEIADPHN 120 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 GAILR+A A G++ KR + V+AK+A+GALE +P R++N+ ALQ++ G Sbjct: 121 FGAILRTAEASGAQGVVIGKRRQAQVTDVVAKAAAGALETLPVARVANVAQALQRLKQAG 180 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + +G ++K P + A+++G+EG+G+R +E + + + G +++LN S Sbjct: 181 YWIVGADVEAKVPYTEVDYRGPTAVVIGSEGQGMRRWVREQCDFLVSIPILGRVQSLNAS 240 Query: 267 NAAAVALYITQNHFA 281 AA V LY A Sbjct: 241 VAAGVLLYEAVRQRA 255 >gi|193212230|ref|YP_001998183.1| RNA methyltransferase, TrmH family, group 3 [Chlorobaculum parvum NCIB 8327] gi|193085707|gb|ACF10983.1| RNA methyltransferase, TrmH family, group 3 [Chlorobaculum parvum NCIB 8327] Length = 257 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 106/243 (43%), Gaps = 7/243 (2%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTI 101 +P +YG + V L + + ++ N +L P + + Sbjct: 13 EPREQVVYGRNAVIELLQSKPESVEKIYLQFNTSHPKLKEIVITARRLKIPCGKARMEKL 72 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD----AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 I G AL T+ + +S LL++L + DPHN+GAI+R+A A Sbjct: 73 TLISGTAKNQGVCALLTSVTFYTLDEVLAAPRNSSPLLVILQGLEDPHNVGAIIRTAEAV 132 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + D +I + SA + K+++GAL H+ ++ +L L +H GF + +++ Sbjct: 133 AADSVIMIEGKGAPISATVHKASAGALSHMRVCKVKSLVKTLDLLHERGFSIVAADMEAE 192 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L++GAEGKGL +T++ + + M G +++LNVS AA V LY Sbjct: 193 HNHTDIDWKRPTVLVMGAEGKGLGSETRKRCDQIVRIPMAGCVESLNVSVAAGVMLYEAM 252 Query: 278 NHF 280 Sbjct: 253 RQR 255 >gi|291613895|ref|YP_003524052.1| RNA methyltransferase, TrmH family, group 3 [Sideroxydans lithotrophicus ES-1] gi|291584007|gb|ADE11665.1| RNA methyltransferase, TrmH family, group 3 [Sideroxydans lithotrophicus ES-1] Length = 247 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G H V+A + + + ++ K+ AR + + V + +D + G Sbjct: 6 IIHGFHAVTARIRQNADSVLEMYVDTQRKDPRARDLLKLAESNGVRIIQVDGKRLDGMAG 65 Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ L LD + LL+VLD V DPHN+GA LRSA AF Sbjct: 66 -NSRHQGVVARVDAAQKVQHLDDVLDTLTEPALLLVLDGVQDPHNLGACLRSADAFGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + +A + K A GA + +PYI ++NL L+++ IG+ +++ L Sbjct: 125 VIAPKDRAVGINATVEKVACGAAQTVPYITVTNLARTLRELQERDIWVIGMDGEAETNLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A +LGAEG+GLR T+ET + + M G +++LNVS + V LY + Sbjct: 185 DVQHQGAVAWVLGAEGEGLRRLTRETCDQLVRIPMQGSVESLNVSVSTGVCLYEARRQR 243 >gi|169831538|ref|YP_001717520.1| tRNA/rRNA methyltransferase SpoU [Candidatus Desulforudis audaxviator MP104C] gi|169638382|gb|ACA59888.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Desulforudis audaxviator MP104C] Length = 272 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 64/287 (22%), Positives = 104/287 (36%), Gaps = 26/287 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ + +E+I LK H +H G+ + A Sbjct: 1 MK-ITSRSNERIKYLKKFHEK-------------------KHRDLENGFLAEGLKVIEEA 40 Query: 61 LNNPSRKIFQLLATKNALARL----DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 L + LL T + L D + Q + + + LAL Sbjct: 41 LQAGWE-VRMLLYTSDVLRHPRGVALLDKARATGTELWECEKQVLAVVTDTKTPQGALAL 99 Query: 117 ETAPLLSPT-LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 P S L R + L++VLD + DP N+G I+R+A A G+IT + Sbjct: 100 IAKPEHSLDVLLQGRGTPLVVVLDGLQDPGNLGTIIRTADACELQGVITLEGTVDLFHPK 159 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + ++++GAL H+P L+ G Q L + + AL +G Sbjct: 160 VVRASAGALFHLPAFGDLPAPAVLEFFTGAGVQKFVADPRGDYSLYECDFSRPTALFMGN 219 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 E +G A + + MPG ++LNV AA++ +Y K Sbjct: 220 EARGCGEMLHAAADRVVAIPMPGQAESLNVGVAASLFIYEAVRQRLK 266 >gi|41406577|ref|NP_959413.1| hypothetical protein MAP0479 [Mycobacterium avium subsp. paratuberculosis K-10] gi|81414895|sp|Q743W2|Y479_MYCPA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAP_0479 gi|41394926|gb|AAS02796.1| hypothetical protein MAP_0479 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 309 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 77/269 (28%), Positives = 123/269 (45%), Gaps = 11/269 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79 A LR NH K+ QS ++ ++ L G + V L + A Sbjct: 41 AHLRPNHPAAKRAQSPPRRPAKRTEETETVL-GRNPVLECLRAGVPATALYVALGTEADE 99 Query: 80 RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131 RL + + VP +D++ G +HQG+AL+ P + D Sbjct: 100 RLTESVSRAADSGISILEVPRADLDRMTGNH-LHQGIALQVPPYIYAHPDDLLEAAAGSL 158 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP R Sbjct: 159 PALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 218 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +NLT LQ G + IGL + L+ +D + +++G+EGKGL ++ + Sbjct: 219 ATNLTRTLQDWADRGLRVIGLDAGGDTMLDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEV 278 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G ++LN S AA V L Sbjct: 279 VSIPMAGSAESLNASVAAGVVLAEISRQR 307 >gi|260599471|ref|YP_003212042.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Cronobacter turicensis z3032] gi|260218648|emb|CBA33967.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Cronobacter turicensis z3032] Length = 243 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + + ++ K + A PV+ Q +D+ Sbjct: 2 SEMIYGIHAVQALLESAPERFQEVFILKGREDKRLLPLIHALEAQGVPVQVANRQWLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P L A L++LD V DPHN+GA LRSA A Sbjct: 62 AD-GAVHQGIVARVKPGRQYGENDLPDLLAAHAQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLFQSKMTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|153952842|ref|YP_001393607.1| methyltransferase [Clostridium kluyveri DSM 555] gi|146345723|gb|EDK32259.1| Predicted methyltransferase [Clostridium kluyveri DSM 555] Length = 280 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 66/271 (24%), Positives = 122/271 (45%), Gaps = 11/271 (4%) Query: 22 KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL--- 78 + +N + + ++ + + Q + G ++V ALN+ + I Q+ + Sbjct: 7 RDMKNKYNVLRHKNKIENLKSEPQFREDLIEGRNSVMEALNSNNVTIEQIFVLDGNMSGS 66 Query: 79 ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------ 132 + VK V + +D+I + VHQG+ + P L+ + + Sbjct: 67 INTIFAIAKEKHIVVKKVDKRKLDRIS-QTGVHQGVIAKVIPYKYCELEDILDYASERGE 125 Query: 133 -QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +++LD + DPHN GAI+R+A GII KR + + + KS++GA+E++ + Sbjct: 126 SPFIIILDEIQDPHNFGAIIRTAEVSGVHGIIIPKRRNVGITPTVYKSSAGAVEYMKICK 185 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++NL ++K+ G + N IALI+G+EGKG+ T++ + Sbjct: 186 VTNLNTIIEKLKKENIWIYGADMTGENYCFDVDFNSSIALIIGSEGKGISKLTKQKCDKL 245 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G I +LN S AA + +Y K Sbjct: 246 VKIPMMGNISSLNASVAAGMLMYEILKQKIK 276 >gi|296166634|ref|ZP_06849061.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898006|gb|EFG77585.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 310 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 73/269 (27%), Positives = 120/269 (44%), Gaps = 10/269 (3%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQLLATK-NA 77 A LR NH K+ QS ++ E + G + V L + ++ L T + Sbjct: 41 AHLRPNHPAAKRAQSPPRRPAKRPTDETETVLGRNPVLECLRAGVPATALYVALGTDTDE 100 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131 + VP +D++ +HQG+AL+ P D Sbjct: 101 RVTESVARAADSGISILEVPRADLDRMTSNH-LHQGIALQVPPYSYAHPDDLLATALGSP 159 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP R Sbjct: 160 PPLLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 219 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +NLT L+ G + IGL + ++ D + +++G+EGKGL ++ + Sbjct: 220 ATNLTRTLKDWADRGIRVIGLDAGGDTVVDDLDGADPLVVVVGSEGKGLSRLVRQNCDEV 279 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G ++LN S AA V L Sbjct: 280 VSIPMAGQAESLNASVAAGVVLAEIARQR 308 >gi|326201776|ref|ZP_08191647.1| RNA methyltransferase, TrmH family, group 3 [Clostridium papyrosolvens DSM 2782] gi|325988376|gb|EGD49201.1| RNA methyltransferase, TrmH family, group 3 [Clostridium papyrosolvens DSM 2782] Length = 265 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 111/282 (39%), Gaps = 23/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN I ++ + +K H ++ F+ G+ V+ A Sbjct: 1 MNYIQSSQNSTLKEIKALHLK-------------------KNRDSQGLYFVEGIRFVNDA 41 Query: 61 LNNPSRKIFQLLATK-NALARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALE 117 ++N +++ K L + VP + ++ + QG+ Sbjct: 42 IDNGQVISKVIVSDKLEGLNGGSELIEKVKGVCSDISLVPEKLFKEVSDTQ-TPQGILAV 100 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + + +++LD + DP N G I+R+A A ++ +K S + Sbjct: 101 LEKNQFDFQEVIEKGNSVVILDCLQDPGNAGTIIRTADAAGISAVLMSKGCVDLYSPKVL 160 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S G++ H+P N+T+ +Q + G++ I K QE + A+I+G E Sbjct: 161 RSTMGSVFHVPIFEGLNITETIQLLKQKGYKVIASHLSGKNNYFQEDLTGRSAIIVGNEA 220 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 G+ +T A S+ + MPG ++LN S AA++ +Y Sbjct: 221 NGISDETANMADSLVKIPMPGKAESLNASVAASIMIYEIVRQ 262 >gi|291547784|emb|CBL20892.1| rRNA methylases [Ruminococcus sp. SR1/5] Length = 258 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 102/257 (39%), Gaps = 4/257 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K + NQK++ + G A P + Q+ ++R Sbjct: 6 SNAKIKNVMQLNQKAKARREQGLFVAEGRKMFLEA---PESWVSQVFV-SETVSRDGELM 61 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + +P + V ++ + L + P S + L+MVL+ + DP Sbjct: 62 SQAEKYPCEIVKDSVFRQMCDTKTPQGILTVLKLPSWSEEEVLAGKNPLVMVLEDLQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G ILR+ G+ TK + + +S G++ +P++ + ++ +K+ Sbjct: 122 NAGTILRTGEGAGVSGVFLTKTCVDITNPKVIRSTMGSIYRMPFLYVEDVVSLEKKLKEK 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G ++ + +QE A +G EGKGL + E A + + M G +++LN Sbjct: 182 GIRSFAAHLKGENSYDQESYKGGTAFFIGNEGKGLTDQAAEAADCLIRIPMCGKVESLNA 241 Query: 266 SNAAAVALYITQNHFAK 282 + A+ + +Y + Sbjct: 242 AMASGILMYEAARQRRE 258 >gi|158338300|ref|YP_001519477.1| RNA methyltransferase [Acaryochloris marina MBIC11017] gi|158308541|gb|ABW30158.1| RNA methyltransferase, TrmH family, group 3 [Acaryochloris marina MBIC11017] Length = 309 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 68/289 (23%), Positives = 130/289 (44%), Gaps = 15/289 (5%) Query: 5 SKKKSEKIF--SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 SK + + S K H +++S +++ + + + +YG H+V +AL Sbjct: 14 SKPRKPQRSYSSAKKPHRQSTSSRPPQKPRIRSKDKEPAQSEEEQGDLIYGRHSVLSALE 73 Query: 63 NPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 + R + ++ + + + V + ++++ ++A HQG+A + Sbjct: 74 H-QRSLNRVWVVSRLRYDPRFHSLLNQAKSQGTIIDEVDHRRLNQLT-QQATHQGIAAQV 131 Query: 119 APLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 A + +++ D + DPHN+GA++R+A A G+I +R + Sbjct: 132 AAYEYLDISTLIEQANAATPKPVIIAADSITDPHNLGAMIRTAEALGAQGVIIPQRRAAG 191 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 ++V+AK A+GALE + R+ NL L+++ GF GLS+ + + + + L Sbjct: 192 ITSVVAKVATGALETLAIARVVNLNQGLEQLKKAGFWIYGLSTSAPQSIHTVTFTEPTVL 251 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++GAEG GL TQ M + + G +LN S A +ALY Sbjct: 252 VIGAEGPGLSVSTQHHCDQMVSIPLQGKTASLNASVATGMALYEVYRQR 300 >gi|254719306|ref|ZP_05181117.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. 83/13] gi|265984307|ref|ZP_06097042.1| RNA methyltransferase [Brucella sp. 83/13] gi|306839077|ref|ZP_07471894.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. NF 2653] gi|264662899|gb|EEZ33160.1| RNA methyltransferase [Brucella sp. 83/13] gi|306405624|gb|EFM61886.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. NF 2653] Length = 286 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 141/288 (48%), Positives = 186/288 (64%), Gaps = 13/288 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52 M + ++ K DSHYA+LRR HRD K + + LY Sbjct: 1 MTDQNSPRTPK-----DSHYARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLY 55 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+HTV AA+ NP RKI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQ Sbjct: 56 GLHTVRAAVENPQRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQ 115 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G+ +E PL + L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E Sbjct: 116 GVMIEAEPLRARKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 175 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 S VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+ Sbjct: 176 SGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 235 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 236 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283 >gi|153813024|ref|ZP_01965692.1| hypothetical protein RUMOBE_03432 [Ruminococcus obeum ATCC 29174] gi|149830826|gb|EDM85916.1| hypothetical protein RUMOBE_03432 [Ruminococcus obeum ATCC 29174] Length = 258 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 98/255 (38%), Gaps = 4/255 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K + NQK++ + G A P I ++ ++ L + Sbjct: 6 QNTQVKNIIKLNQKAKARREQGLFIAEGRKMFLEA---PDDWIEKIYVAESMLEDEEVMK 62 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + F V ++ + L + P LLMVL+ + DP Sbjct: 63 KV-RRFSWDAVENGVFRQMCDTQTPQGILTVLRQPSYELEDLLKEEKPLLMVLEDLQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G I+R+ G+ TK + + ++ G++ IP+ + ++ QK+ Sbjct: 122 NAGTIIRTGEGAGVSGVFLTKTCVDITNPKVIRATMGSVYRIPFFYVEDVVSLKQKLQGR 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + + K ++E D A ++G EGKGL + + A + + M G +++LN Sbjct: 182 GIRFLAAHLQGKNSYDRESYEDGTAFLIGNEGKGLTDQAADAADCLIRIPMCGQVESLNA 241 Query: 266 SNAAAVALYITQNHF 280 + AA + +Y Sbjct: 242 AMAAGILMYEAARQR 256 >gi|118465233|ref|YP_879854.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium avium 104] gi|254773532|ref|ZP_05215048.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium avium subsp. avium ATCC 25291] gi|254806514|sp|A0QAB6|Y574_MYCA1 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAV_0574 gi|118166520|gb|ABK67417.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium avium 104] Length = 309 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 77/269 (28%), Positives = 123/269 (45%), Gaps = 11/269 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79 A LR NH K+ QS ++ ++ L G + V L + A Sbjct: 41 AHLRPNHPAAKRAQSPPRRPAKRTEETETVL-GRNPVLECLRAGVPATALYVALGTEADE 99 Query: 80 RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131 RL + + VP +D++ G +HQG+AL+ P + D Sbjct: 100 RLTESVSRAADSGISILEVPRADLDRMTGNH-LHQGIALQVPPYIYAHPDDLLEAAAGSP 158 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP R Sbjct: 159 PALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 218 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +NLT LQ G + IGL + L+ +D + +++G+EGKGL ++ + Sbjct: 219 ATNLTRTLQDWADRGLRVIGLDAGGDTTLDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEV 278 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G ++LN S AA V L Sbjct: 279 VSIPMAGSAESLNASVAAGVVLAEISRQR 307 >gi|284799730|ref|ZP_05984713.2| RNA methyltransferase, TrmH family [Neisseria subflava NJ9703] gi|284796977|gb|EFC52324.1| RNA methyltransferase, TrmH family [Neisseria subflava NJ9703] Length = 263 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 51/282 (18%), Positives = 93/282 (32%), Gaps = 25/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M LI+ ++E++ K + +++ + L GVH + Sbjct: 1 MKLITSAQNEQL------------------KHLFRLLTQAKARRESGETVLEGVHLLQTY 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L + L K + + V + + KI + Sbjct: 43 LQSGGTPKQVYLPEKKQQHIEIQEITAQLDEGLITWVGNEALSKITS-LTDADDVMTWID 101 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L + + +VL+ V DP N G ILRSA A I+ + S + ++ Sbjct: 102 IPQQAGLPSDGDC---VVLERVQDPGNAGTILRSAAAAGVRQIVCSNDSVDIWSPKVLRA 158 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 GA + L+ ++ + T + + A + G EG G Sbjct: 159 GMGAHFLLSIFSRVELSAWMETYQHQIWATALGGRNIGLYEMD--LSQPCAWVFGNEGSG 216 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +E A + + M G ++LNV+ AA V L+ Sbjct: 217 VSETVKEKADACVKIPMLGQTESLNVAMAATVCLFEQMRQRI 258 >gi|89094562|ref|ZP_01167500.1| hypothetical protein MED92_00984 [Oceanospirillum sp. MED92] gi|89081161|gb|EAR60395.1| hypothetical protein MED92_00984 [Oceanospirillum sp. MED92] Length = 245 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 116/239 (48%), Gaps = 9/239 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 L+G+H V+ AL +++I ++L K +A + D L ++ V + ++++V Sbjct: 6 LFGIHAVNTALKRDAQRIHKILIMKGRQDAKMQRLIDTALDLRIRIEQVSKRELEELVKG 65 Query: 108 EAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +AL LD + L++LD V DPHN+GA LR+A A Sbjct: 66 AVHQGVVALCKPIQTYNEQYLDKLLDQLEEPPFLLILDGVTDPHNLGACLRTADAAGVQA 125 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ K S +A AK A GA E +PY+ ++NL L+ + G T G + ++ + Sbjct: 126 VVAPKDKSAPLNATAAKVACGAAESVPYVLVTNLARTLKSLQERGVWTTGTAGETDLDIY 185 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +ALI+GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 186 QANLKGPMALIMGAEGQGMRRLTREHCDQLVKIPMAGEVSSLNVSVATGICLFEAVRQR 244 >gi|312622555|ref|YP_004024168.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor kronotskyensis 2002] gi|312203022|gb|ADQ46349.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor kronotskyensis 2002] Length = 270 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 111/285 (38%), Gaps = 28/285 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 IS +++E I +K H ++ + + + G+ V A+ Sbjct: 7 EFISSRENECIKRVKKLHDK-------------------KYREEFRSFIIEGLKLVKEAI 47 Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPF-------PVKTVPPQTIDKIVGKEAVHQGL 114 I ++ ++ A + V VP + + I L Sbjct: 48 EYQIECINLVIFSQQAKEKYQEFFEECKYLLQDGKIKRVIEVPDKLFEYITTTSTPQGIL 107 Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 A ++ ++N + +++ D++ DP N+G ++R A AF D ++TTK + Sbjct: 108 AECIFVDK--DINFIKNLRRVVIADNLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNP 165 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 ++ G+L H+ +R + ++ + F + + + + + + +++G Sbjct: 166 KTTRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFCIVIG 225 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E +G+ + AT + M G ++LN + AA++ LY + Sbjct: 226 NESEGVSDSFAKVATRKIKIPMVGKTESLNAAVAASIVLYELRKR 270 >gi|239827986|ref|YP_002950610.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70] gi|239808279|gb|ACS25344.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70] Length = 254 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 57/277 (20%), Positives = 105/277 (37%), Gaps = 27/277 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ ++ K + + + G H V A Sbjct: 1 MKRIQSTKNPQVKEWKKLLTK-------------------KGQEKMGLFLIEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + + +L+ + W+ PV V + + I E QG+A Sbjct: 42 LKSHA-PLVELIVDEKKEIPPSWN---AGHLPVTIVTEEVMKAISDTE-TPQGIAAVCEQ 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 +D + + LL+ D V DP NIG ++R+A A D +I + + + + ++ Sbjct: 97 FSYGDIDWTQANVLLI--DAVQDPGNIGTMIRTADAAGIDAVILGEGCADLYNPKVIRAT 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+L H+P IR + + ++ + AL++G EG G+ Sbjct: 155 QGSLFHLPIIRGNLREWIERLCEKNVAIYGTA-LENGEDYRHIKPARPFALLVGNEGSGV 213 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K + T ++ + G ++LNV+ AA + LY Q Sbjct: 214 HKKLLQMTTKNLYIPIYGQAESLNVAVAAGILLYHLQ 250 >gi|258515609|ref|YP_003191831.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum acetoxidans DSM 771] gi|257779314|gb|ACV63208.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum acetoxidans DSM 771] Length = 266 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 103/261 (39%), Gaps = 7/261 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQLLATKNALARLD 82 ++ + ++ K R + GV V AL + I+ +N + Sbjct: 7 DNPRIRYLKHLA-KRRFRETEGKFIIEGVRFVEEALASAMSVEAVIYSAKLFQNNRGKEL 65 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS--PTLDAVRNSQLLMVLDH 140 + P V ++ + A QG+ + + + QLL+++D Sbjct: 66 LECIYKSNVPFWEVTEPILESLSD-TATPQGVVAVIKSVPTGLQEILTRVKKQLLVLVDG 124 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G I+R++ A D +I ++ + ++ G+L H+P I A + Sbjct: 125 IQDPGNLGTIIRTSDAAGVDAVILSRGTVDLYNPKTLRATMGSLFHLPVIMAGEPVQAAE 184 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + G + + +P+ +AL++G+E G+ + ++ MPG Sbjct: 185 LLLQAGIRLVVGMPQDCQPVYSVDLTGPVALVVGSEANGVSEGLKRLPAIPVNIPMPGHA 244 Query: 261 KALNVSNAAAVALYITQNHFA 281 ++LN + AAA+ LY + Sbjct: 245 ESLNAAIAAAIMLYEAVRQRS 265 >gi|254449207|ref|ZP_05062656.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium HTCC5015] gi|198261184|gb|EDY85480.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium HTCC5015] Length = 264 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 81/258 (31%), Positives = 122/258 (47%), Gaps = 9/258 (3%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH- 89 ++ + + S+ ++ +G+H V A + ++FQL K A RL L Sbjct: 3 RRGKQRSSGSKRGTKSPQFL-FGLHAVEAFIQRRPEEVFQLYWQKGADQRLGKLQALATQ 61 Query: 90 -PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVN 142 P + V Q +D V +A + L LD V N L++VLD V Sbjct: 62 LGLPTQYVERQQLDDWVDGARHQGVIAQVRSSELWREADLEGILDGVENVPLVLVLDGVT 121 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DPHN+GA LRSA D +I K S +AV K A GA E P+I+++NL L+ + Sbjct: 122 DPHNLGACLRSANGAGVDVVIAPKDKSAGLTAVSRKVACGAAEETPFIQVTNLARTLKGL 181 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G +GL+ + L + + +AL++GAEG GLR T+E+ + + M G + + Sbjct: 182 AERGLWIVGLADGEDRSLYEGRLDGPMALVMGAEGDGLRRLTRESCDEIVAIPMGGSVSS 241 Query: 263 LNVSNAAAVALYITQNHF 280 LNVS AA V LY Sbjct: 242 LNVSVAAGVCLYEVVRQR 259 >gi|147678286|ref|YP_001212501.1| rRNA methylases [Pelotomaculum thermopropionicum SI] gi|146274383|dbj|BAF60132.1| rRNA methylases [Pelotomaculum thermopropionicum SI] Length = 270 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 98/263 (37%), Gaps = 7/263 (2%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALA 79 L R + K ++ + R + + GV V ALN+ + + Sbjct: 2 LSRQNSRIKYLRRLGSR-RFREKEGKFLIEGVRFVEEALNSAWPVEMLVYCRRITETRRG 60 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS--PTLDAVRNSQLLMV 137 + P+ V ++ G QG L A LL++ Sbjct: 61 EALLEKASFQGVPLVEVDESLFGELAG-TTTPQGALAVVKKGKVSLEDLQAGGEPALLVI 119 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 +D V DP N+G I+RSA A G+I K + +A ++ GA+ ++P ++ + Sbjct: 120 VDGVQDPGNLGTIVRSAGAAGAGGVILLKGTADIFNAKALRATMGAIFYVPVVQDVTSVE 179 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 A+ + G + + K + AL+LG+E G + MP Sbjct: 180 AMTYLKQLGIKAVAGDPRGDKLIYDCDLTVPCALVLGSEAAGAGEPVLRMVAERVRIPMP 239 Query: 258 GIIKALNVSNAAAVALYITQNHF 280 G ++LNV+ ++AV L+ Sbjct: 240 GRAESLNVAVSSAVLLFEAVRQR 262 >gi|240850284|ref|YP_002971677.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup] gi|240267407|gb|ACS50995.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup] Length = 276 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 135/274 (49%), Positives = 182/274 (66%), Gaps = 5/274 (1%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFN----QKSRHTSQPENLFLYGVHTVSAALNNPSR 66 K + ++SHYA+LRR +RD K S + +K + Q + LYG+H+V AAL NP R Sbjct: 2 KEKTSQNSHYARLRRRYRDTKGSPSRSFTHLKKKAASLQQGIIHLYGIHSVQAALENPKR 61 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 + L T+NAL RL+ + +P V P+ +D +VG EAVHQG+ LET PL L Sbjct: 62 ILKCLYVTQNALKRLNISES-DYPCSVTLCTPKYLDSLVGSEAVHQGIVLETLPLKPCKL 120 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + N+ L++V+D + DPHN+GAI+RSAVA +ITT R+SP ES VLAK+ASGALE Sbjct: 121 SELTNTDLVIVMDQITDPHNVGAIMRSAVALKAKALITTCRHSPHESGVLAKAASGALEM 180 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 I YI + NL +ALQ++H GF + GL S+ KPLE + +KIAL+LGAEGKGLR KT+E Sbjct: 181 IHYITVRNLAEALQELHQTGFSSFGLDSEGDKPLETALTGNKIALVLGAEGKGLRKKTRE 240 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T ++ L MPG IK+LNVSNAA +ALY+ + Sbjct: 241 TVCALTRLDMPGNIKSLNVSNAATIALYVAHKYL 274 >gi|50122542|ref|YP_051709.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|52783288|sp|Q6D127|RLMB_ERWCT RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|49613068|emb|CAG76519.1| probable tRNA/rRNA methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 244 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 61/241 (25%), Positives = 100/241 (41%), Gaps = 8/241 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R ++ Q +DK Sbjct: 2 SEIIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPVIAELEAQGIVIQVASRQWLDKQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D L++LD V DPHN+GA LR+A Sbjct: 62 AEDAVHQGIVAKVKEGRKYQENDLPAMLDNLEMPFLLILDGVTDPHNLGACLRNADGAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A + K A GA E IP I ++NL ++ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNATVKKVACGAAETIPVISVTNLARTMRLLQERNIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241 Query: 280 F 280 Sbjct: 242 R 242 >gi|150015025|ref|YP_001307279.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052] gi|149901490|gb|ABR32323.1| RNA methyltransferase, TrmH family, group 3 [Clostridium beijerinckii NCIMB 8052] Length = 300 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 77/294 (26%), Positives = 129/294 (43%), Gaps = 17/294 (5%) Query: 4 ISKKK--SEKIFSLKDSHYAKLRRN---HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS 58 IS K +K S+ +S N +++ K N KS + + G + V Sbjct: 9 ISSGKFMEDKDKSVTESKGKAKSYNQVKNKNKKDNMVGNDKSTSAIEEREDIVIGRNAVI 68 Query: 59 AALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115 AL R I L + + L + + +K V + +D + G E VHQG+ Sbjct: 69 EALR-GERTIEALYISNSKLEGSIKTIVGLAKENKILIKEVDKRKLDSMCGGE-VHQGVI 126 Query: 116 LETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 + P + + + +++LD V DPHN+G+I+R+A F GII KR Sbjct: 127 AKVTPYKYSEVSDILDLAEKRGEAPFIVILDEVEDPHNLGSIVRTAELFGVHGIILPKRR 186 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S S S + KS+ GA+EH+ +++NL ++++ G G +++ Q Sbjct: 187 SASVSTTVYKSSVGAIEHVKIAKVTNLNSTIEELKEKGIWIYGADIRAEEYSYQVDFGGP 246 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A+I+G EG+G+ T E + + M G I +LN S A + +Y K Sbjct: 247 CAVIIGNEGRGISKLTVEKCDKLIKIPMVGKINSLNASVAGGIIMYEVLKGRLK 300 >gi|237815670|ref|ZP_04594667.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus str. 2308 A] gi|297248557|ref|ZP_06932275.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str. B3196] gi|237788968|gb|EEP63179.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus str. 2308 A] gi|297175726|gb|EFH35073.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str. B3196] Length = 303 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 140/288 (48%), Positives = 187/288 (64%), Gaps = 13/288 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52 M + ++ K DSHYA+LRR HRD K + + LY Sbjct: 18 MTDQNSPRTPK-----DSHYARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLY 72 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+HTV AA+ NP RKI ++ AT+N ARL+ + PFPV+ V P+ IDK G EAVHQ Sbjct: 73 GLHTVRAAVENPQRKILRMRATRNGFARLEIGESDSLPFPVEIVDPRDIDKETGSEAVHQ 132 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G+ +E PL + L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E Sbjct: 133 GVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 192 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+ Sbjct: 193 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 252 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 253 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300 >gi|62290163|ref|YP_221956.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941] gi|189024398|ref|YP_001935166.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus S19] gi|254689467|ref|ZP_05152721.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 6 str. 870] gi|254697605|ref|ZP_05159433.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 2 str. 86/8/59] gi|254730496|ref|ZP_05189074.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 4 str. 292] gi|256257714|ref|ZP_05463250.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 9 str. C68] gi|260546707|ref|ZP_05822446.1| RNA methyltransferase [Brucella abortus NCTC 8038] gi|260754991|ref|ZP_05867339.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260758207|ref|ZP_05870555.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260762034|ref|ZP_05874377.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260884001|ref|ZP_05895615.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|62196295|gb|AAX74595.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1 str. 9-941] gi|189019970|gb|ACD72692.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus S19] gi|260095757|gb|EEW79634.1| RNA methyltransferase [Brucella abortus NCTC 8038] gi|260668525|gb|EEX55465.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260672466|gb|EEX59287.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260675099|gb|EEX61920.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260873529|gb|EEX80598.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68] Length = 286 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 140/288 (48%), Positives = 187/288 (64%), Gaps = 13/288 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52 M + ++ K DSHYA+LRR HRD K + + LY Sbjct: 1 MTDQNSPRTPK-----DSHYARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLY 55 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+HTV AA+ NP RKI ++ AT+N ARL+ + PFPV+ V P+ IDK G EAVHQ Sbjct: 56 GLHTVRAAVENPQRKILRMRATRNGFARLEIGESDSLPFPVEIVDPRDIDKETGSEAVHQ 115 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G+ +E PL + L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E Sbjct: 116 GVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 175 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+ Sbjct: 176 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 235 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 236 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283 >gi|332978195|gb|EGK14927.1| TrmH family RNA methyltransferase [Desmospora sp. 8437] Length = 263 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 106/281 (37%), Gaps = 25/281 (8%) Query: 1 MNL--ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS 58 M + I+ ++EK+ K+ + + + + + ++ + G + Sbjct: 1 MEIHQITSARNEKV------------------KRWRKLSTR-KGREEFGSILIEGEKLLK 41 Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 A + +++ + R D + V + P T ++V + QG+A E Sbjct: 42 EAARAGWQVRSVIVSDEG--IRGLEDLSYLDGVSVYALYPSTFAQLVDTQ-TPQGIAAEV 98 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + +R + +++LD + DP N+G ILR+A A + + + + Sbjct: 99 VVPENKEGYRIRGEEPVLLLDAIRDPGNLGTILRTAEAAGVGDVWLGAGTVDPFNPKVVR 158 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 SA G+L R+ + + + + + A++LG EGK Sbjct: 159 SAMGSLFRTRIRRVDLREAIPELKKQGYWVVGTSPRAERAHFDC-HYPKQTAILLGNEGK 217 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 G+ + + MPG +++LNVS A + L+ Sbjct: 218 GISAEIDSLVDDRVKIPMPGQVESLNVSVTAGILLFELLRQ 258 >gi|331091980|ref|ZP_08340812.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402879|gb|EGG82446.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium 2_1_46FAA] Length = 257 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 107/254 (42%), Gaps = 4/254 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K++ +KS+ ++ + G+ A P +I ++ ++ R + N Sbjct: 7 NAQVKELLQLQKKSKVRNERNIFLVEGIKMFFEA---PRNRIEKVFISETLFDRKKQELN 63 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 L V+ + + + + L + + + LM+LD++ DP N Sbjct: 64 LD-GLKVEILSDKVFSHVSDTKTPQGILCIMRQKKTKLEEIFAQKPEHLMILDNLQDPGN 122 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G I+R+A GII +K + +S G++ +P++ + +L + ++++ Sbjct: 123 LGTIVRTAEGAGVSGIILSKDCVDIYNPKTIRSTMGSIYRMPFLYVEDLENTIEEVKKQD 182 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + K ++E A ++G EG GLR + E A + M G +++LN + Sbjct: 183 IKVYAAHLQGKNNYDEENYKTGCAFLIGNEGNGLRDEIAEKADIWVKIKMHGEVESLNAA 242 Query: 267 NAAAVALYITQNHF 280 A+++ ++ Sbjct: 243 IASSILMFEVCRQR 256 >gi|325662834|ref|ZP_08151403.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA] gi|325470886|gb|EGC74115.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA] Length = 262 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 111/257 (43%), Gaps = 6/257 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K++ +KS+ ++ + GV P ++ ++ ++ + + Sbjct: 6 SNARVKELVQLQKKSKVRNEQGVFLVEGVKMYQEI---PQEQLVKVYVSETFADKQKEEI 62 Query: 86 NLPHPF-PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVND 143 N ++ + + V QG+ D L+VLD++ D Sbjct: 63 NRLKDRRKLEYLSDHVF-QYVSDTKTPQGILCVVRQSAYCLEDILEAEDAHLLVLDNLQD 121 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ILR+A GII +K + + +S G++ +P++ + +L +A+ K+ Sbjct: 122 PGNLGTILRTAEGAGVTGIIISKESVDIYNPKVIRSTMGSIYRVPFVYVEDLKEAIAKVK 181 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + G T D K ++E K A ++G EG GLR + + A + + M G +++L Sbjct: 182 AHGIFTYAAHLDGKNSYDKEDYTKKTAFLIGNEGNGLRKEIADLADTWIRIPMQGQVESL 241 Query: 264 NVSNAAAVALYITQNHF 280 N + A +V ++ T Sbjct: 242 NAAIATSVLMFETARQR 258 >gi|23099587|ref|NP_693053.1| rRNA methylase [Oceanobacillus iheyensis HTE831] gi|22777817|dbj|BAC14088.1| rRNA methylase [Oceanobacillus iheyensis HTE831] Length = 246 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 110/276 (39%), Gaps = 30/276 (10%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 +I+ K+EK+ S K H + + + + G+H + AL Sbjct: 1 MITSIKNEKVKSWKKLH-------------------RRKERLKTNTFLIDGIHLIQEALK 41 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 + I +L+ + N PV V + +I + +A+ + Sbjct: 42 SNW-VIQELIVVEGY-----ELPNDAKDVPVAYVSENVLKEISQTQTPQGVIAVVEMNIP 95 Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 D + L+++LD + DP N+G I+R+A A D ++ + + ++ G Sbjct: 96 KVQED----NNLIILLDAIQDPGNMGTIIRTADAAGVDAVVLGDGCVDIFNDKVIRATQG 151 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ++ HIP + + + + GF + + + ++K+ LILG EG G+ P Sbjct: 152 SIFHIPIYTATLEQEIH-MLQTQGFTILATALHDAVEYTEVSVHNKVGLILGNEGAGIAP 210 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A ++ + G ++LNV AA + +Y + Sbjct: 211 SLLNKANQRINIPIYGKAESLNVGIAAGILMYHLKK 246 >gi|261822838|ref|YP_003260944.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium wasabiae WPP163] gi|261606851|gb|ACX89337.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium wasabiae WPP163] Length = 243 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R ++ Q +DK Sbjct: 2 SEIIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELEAQGIVIQVASRQWLDKQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + D + L++LD V DPHN+GA LR+A Sbjct: 62 AEDAVHQGIVVKVKEGRKYQENDLPAMLDNIETPFLLILDGVTDPHNLGACLRNADGAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A + K A GA E +P I ++NL ++ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241 Query: 280 FA 281 A Sbjct: 242 RA 243 >gi|225569865|ref|ZP_03778890.1| hypothetical protein CLOHYLEM_05959 [Clostridium hylemonae DSM 15053] gi|225161335|gb|EEG73954.1| hypothetical protein CLOHYLEM_05959 [Clostridium hylemonae DSM 15053] Length = 263 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 102/257 (39%), Gaps = 6/257 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---W 83 ++ K++ + +K + + + + G+ P+ ++ + +++ R Sbjct: 7 NQKVKRLVNLRKKRKARDEEKVFLVEGIRMFREV---PAERLLEAYVSESFYKREGGTVS 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + D + + L + + A ++VLD++ D Sbjct: 64 RVLEGCAVRPEILSDTVYDYVSDTKTPQGVLCVVRQKEYTFAEAAGGERAHILVLDNLQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A GI+ + + +S G++ +P R +LT+A+++M Sbjct: 124 PGNMGTVIRTAEGAGVTGIVMSSECVDVYNPKTIRSTMGSVYRMPLYRAKDLTEAVRRMK 183 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G T D ++ A +G EG GLR + A + + M G +++L Sbjct: 184 ESGIHTYAAHLDGVLSYDEADLTKPCAFFIGNEGSGLREEVAALADTYIRIPMEGEVESL 243 Query: 264 NVSNAAAVALYITQNHF 280 N + AAAV ++ Sbjct: 244 NAATAAAVLMFEAARQR 260 >gi|167464999|ref|ZP_02330088.1| 23S rRNA methyltransferase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381143|ref|ZP_08055146.1| 23S rRNA methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154719|gb|EFX46990.1| 23S rRNA methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 245 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 117/244 (47%), Gaps = 12/244 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 F+ G H+V AL + R I ++ +NA + H V+TV + +D++ Sbjct: 2 EEFIGGKHSVLEALRSG-RTINKIWIAENAGKQQAGSVLSEAKKHGIIVQTVDRRKLDQM 60 Query: 105 VGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+ + A +++ +++LD + DPHN+G+ILR+A Sbjct: 61 AEGI-QHQGIVAQVAAYEYASVEDILNKATQKGEDPFILILDEIEDPHNLGSILRTADCT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR S +A ++K+++GA+E++P R++NL ++++ G G + Sbjct: 120 GVHGVIIPKRRSAGLTATVSKTSAGAVEYVPVARVTNLAQTIEQLKEKGIWVAGTDVNQA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + IAL++G E KG+ +E + L M G I +LN S AA V +Y Sbjct: 180 EDVYRSNFRMPIALVIGNENKGVGRLVKEKCDFLVKLPMHGQINSLNASVAAGVLMYEVA 239 Query: 278 NHFA 281 + Sbjct: 240 RQRS 243 >gi|218290034|ref|ZP_03494201.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus acidocaldarius LAA1] gi|218239868|gb|EED07056.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus acidocaldarius LAA1] Length = 255 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 74/255 (29%), Positives = 125/255 (49%), Gaps = 10/255 (3%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF 91 M+ ++ + + G H V AAL + R + ++ + A Sbjct: 5 MRDGARRRSAQGEEAVDLVKGRHAVLAALES-ERPVNKVWVAEGASGMDAIVAKARSRGV 63 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHN 146 V+ VP +D++ + HQG+ + AP LD V L++VLD + DPHN Sbjct: 64 VVQFVPRSRLDEMA---SAHQGVIAQVAPYAYVDLDDVTRRDTGFSPLVVVLDEIADPHN 120 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 GAILR+A A G++ KR + V+AK+A+GALE +P R++N+ ALQ++ G Sbjct: 121 FGAILRTAEAAGAQGVVIGKRRQAQVTDVVAKAAAGALEALPVARVANVAQALQRLKQAG 180 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + +G ++K P + A+++G+EG+G+R +E + + + G +++LN S Sbjct: 181 YWIVGADVEAKVPYTEVDYRGPTAVVIGSEGQGMRRWVREQCDFLVSIPILGRVQSLNAS 240 Query: 267 NAAAVALYITQNHFA 281 AA V LY A Sbjct: 241 VAAGVLLYEAVRQRA 255 >gi|255066800|ref|ZP_05318655.1| RNA methyltransferase, TrmH family [Neisseria sicca ATCC 29256] gi|255048875|gb|EET44339.1| RNA methyltransferase, TrmH family [Neisseria sicca ATCC 29256] Length = 263 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 52/282 (18%), Positives = 87/282 (30%), Gaps = 24/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M LI+ ++E++ K + +S+ + L GVH + Sbjct: 4 MKLITSAQNEQL------------------KHLSKLLTQSKARREYGQTVLEGVHLLQVY 45 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETA 119 L L + + V + + KI + Sbjct: 46 LEAGYTPKQVYLPESKNTHPEIRNLISSLDEDGITWVGNEALSKITS-LNDADDVMTWIE 104 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L + +VLD + DP N+G +LRSA A I+ S + ++ Sbjct: 105 IPPQGDLPLSGDC---VVLDRLQDPGNVGTVLRSAAASGIRQIVLGNDCVDIWSPKVLRA 161 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 GA + I + L + L Q N A + G EG G Sbjct: 162 GMGAHF-LLDIYSRVFLPHWLDAYQDKIWATALDGRNPSDLYQLDLNAPCAWVFGNEGSG 220 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + E + M G ++LNV+ AA V L+ Sbjct: 221 VSREILEKVDGSVRIPMLGQTESLNVAMAATVCLFEQMRQRI 262 >gi|308389631|gb|ADO31951.1| RNA methyltransferase [Neisseria meningitidis alpha710] Length = 261 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 112/238 (47%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V V +D I K Sbjct: 18 IYGFHAVNARLWQNPKSIVELYIQEGKNDARTREVLEKAANENIRVYFVDTTRLDAIS-K 76 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+A L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 77 GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTANAMGVHAV 136 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 137 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 196 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 197 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 254 >gi|261409276|ref|YP_003245517.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus sp. Y412MC10] gi|261285739|gb|ACX67710.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. Y412MC10] Length = 266 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 102/259 (39%), Gaps = 3/259 (1%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARL 81 L + K +K +H + + G+H V AL++ + K L Sbjct: 4 LSPQNARVKGWAQLQEK-KHRDKQNKYVVEGIHLVQEALSSGADIECVAYDVDKGIPQEL 62 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + V I K+ + Q A+ +R + +++VLD + Sbjct: 63 RHITDTGQGAEWIGVSHAVISKVSDTPSPQQVFAVIRKEARQWQDLILRENGMVVVLDGL 122 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+RSA A G++ + + + +S G+L H+P + L L + Sbjct: 123 QDPGNVGTIIRSADAVGAAGVVLGRGCADLYNPKTLRSTMGSLFHLPVLEGDLL-SILPE 181 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G + + + ++ + +++G+EG+G+ P+ + MPG + Sbjct: 182 ARERGARLVTTMLEGQRSCFEYDFKGTSWIVIGSEGRGVSPEVAALVDDAIRIPMPGRAE 241 Query: 262 ALNVSNAAAVALYITQNHF 280 +LN + AA+V +Y Sbjct: 242 SLNAAMAASVLMYEALRQR 260 >gi|227112377|ref|ZP_03826033.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 243 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R ++ Q +DK Sbjct: 2 SEIIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELEAQGIVIQVANRQWLDKQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L++LD V DPHN+GA LR+A Sbjct: 62 ADDAVHQGIVAKVKEGRKYQENDLPAMLDNLETPFLLILDGVTDPHNLGACLRNADGAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A + K A GA E +P I ++NL ++ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241 Query: 280 FA 281 A Sbjct: 242 RA 243 >gi|156932411|ref|YP_001436327.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Cronobacter sakazakii ATCC BAA-894] gi|156530665|gb|ABU75491.1| hypothetical protein ESA_00190 [Cronobacter sakazakii ATCC BAA-894] Length = 243 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 109/243 (44%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A PV+ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVPVQVANRQWLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P L A L++LD V DPHN+GA LRSA A Sbjct: 62 AD-GAVHQGIVARVKPGRQYGENDLPDLLAAHAQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|295110727|emb|CBL24680.1| rRNA methylases [Ruminococcus obeum A2-162] Length = 258 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 97/255 (38%), Gaps = 4/255 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K + NQK++ + G A P I ++ ++ L Sbjct: 6 QNTQVKNVIKLNQKAKARREQGLFIAEGRKMFLEA---PDDWIEKVYVAESLLDDE-EIM 61 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 F V ++ + L + P + + LLMVL+ + DP Sbjct: 62 QKAGRFSWDAVENSVFRQMSDTQTPQGVLTVLRQPSYQLEDLLKQEAPLLMVLEDLQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G I+R+ G+ TK + + ++ G++ IP+ + ++ QK+ + Sbjct: 122 NAGTIIRTGEGAGIGGVFLTKTCVDITNPKVIRATMGSIYRIPFFYVEDVVLLKQKLQNC 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + K ++E + A ++G EGKGL + + A + + M G +++LN Sbjct: 182 GIRFFAAHLQGKNAYDRESYQEGTAFLIGNEGKGLTDRAADAADCLIRIPMCGHVESLNA 241 Query: 266 SNAAAVALYITQNHF 280 + A + +Y Sbjct: 242 AMAGGILMYEAARQR 256 >gi|225075264|ref|ZP_03718463.1| hypothetical protein NEIFLAOT_00267 [Neisseria flavescens NRL30031/H210] gi|224953439|gb|EEG34648.1| hypothetical protein NEIFLAOT_00267 [Neisseria flavescens NRL30031/H210] Length = 263 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 51/282 (18%), Positives = 94/282 (33%), Gaps = 25/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M LI+ ++E++ K + +++ + L GVH + + Sbjct: 1 MKLITSAQNEQL------------------KHLFRLLTQAKARRESGETVLEGVHLLQSY 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L + L K + + V + + KI + + Sbjct: 43 LQSGGTPKQVYLPEKKQQHPEIQEITAQLDEGLITWVGNEALSKITS-LSDADDVMTWID 101 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L + + +VL+ V DP N G ILRSA A I+ S + ++ Sbjct: 102 IPKQAGLPSDGDC---VVLERVQDPGNAGTILRSAAAAGVRQIVCGNDSVDIWSPKVLRA 158 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 GA + L+ ++ + T + + A + G EG G Sbjct: 159 GMGAHFLLSIFSRVELSAWMETYQHQIWATALGGRNIGLYEMD--LSQTCAWVFGNEGSG 216 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +E A + + M G ++LNV+ AA V L+ Sbjct: 217 VSETVKEKADACVKIPMLGQTESLNVAMAATVCLFEQMRQRI 258 >gi|22002552|gb|AAM82703.1| rRNA methylase-like protein [Synechococcus elongatus PCC 7942] Length = 258 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 96/257 (37%), Gaps = 4/257 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R + K+++ +Q ++ Q L G H + A+ + + + Sbjct: 4 SRQNPLTKQIRQLHQ-AKGRRQMGAFLLEGTHLLQEAIATNWPLLQVCATPACRINTRNS 62 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + P +TV + + + + S L ++ + D Sbjct: 63 GSRAIQAAPEQTVSDDLLAYLCTTVNP---DGVVANRSTAAPASTAHFSLLADAVETLQD 119 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+R+A A DG+ T + + ++++G +P ++L L+ Sbjct: 120 PGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVLRASAGQWFRLPIAIATDLGQTLRSWQ 179 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G+Q + + L Q L+LG EG GL P A S + +++L Sbjct: 180 QQGYQIVSTLPRATTTLWQADLTRPTVLLLGNEGAGLSPDLAAIADSAVTIPQAAGVESL 239 Query: 264 NVSNAAAVALYITQNHF 280 NV+ AAA+ LY + Sbjct: 240 NVAIAAALLLYEARRQR 256 >gi|209523883|ref|ZP_03272435.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328] gi|209495555|gb|EDZ95858.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328] Length = 259 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 97/255 (38%), Gaps = 4/255 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K+++ + ++ + L G H + AA I L T R Sbjct: 6 QNPLVKQIRQLHT-AKARREEGLFILEGTHLIEAACAVNWE-IITLCCTPQWQERHPELW 63 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 L + Q D+++ A V + L +VL+ V DP Sbjct: 64 ELAAKTADR--TEQVSDRLIVAMTTTVNPDGVVAIARRQDQTPVPITSLGLVLETVQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ++R+A A +G+ + + ++++GA +P S+L L Sbjct: 122 NLGTMIRTATAAGVEGLWLSSDSVDPTHPKVLRASAGAWFEVPIAVHSDLITQLSNSQKQ 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G Q + +D+ + A++LG EG GL P A + + G +++LNV Sbjct: 182 GIQVVATRADASLSYWEIDLRQPTAIVLGNEGSGLSPDLNSLADYHIRVPLLGNVESLNV 241 Query: 266 SNAAAVALYITQNHF 280 + AA+ LY Q Sbjct: 242 AICAALILYEAQRQR 256 >gi|153815882|ref|ZP_01968550.1| hypothetical protein RUMTOR_02127 [Ruminococcus torques ATCC 27756] gi|317500638|ref|ZP_07958857.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089882|ref|ZP_08338775.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846701|gb|EDK23619.1| hypothetical protein RUMTOR_02127 [Ruminococcus torques ATCC 27756] gi|316897956|gb|EFV20008.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|330403579|gb|EGG83137.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium 3_1_46FAA] Length = 261 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 53/255 (20%), Positives = 102/255 (40%), Gaps = 4/255 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K++ +KSR + + G P +I +L +++ A+ + Sbjct: 6 SNIQVKELLRLQKKSREREKEGVFIVEGPRMAEEI---PRERIVKLYVSESFQAKCVKEK 62 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 N V T+ V QG+ + D + + ++VL+++ DP Sbjct: 63 N-DRFIQEAEVMSDTVFAHVSDTKTPQGILAVVRRMEYTAEDILGETPHVLVLENIQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I R+A A GI+ +K + + +S GA+ IP+I +L + ++ Sbjct: 122 NLGTIFRTAEAAGATGIVLSKDCVDLYNPKVIRSTMGAIFRIPFIYTDDLKGTIDELKRE 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + + E A ++G EG GL +T A + M G ++LN Sbjct: 182 GITVYAAHLKGENSYDMEDYKTACAFLIGNEGNGLTEETAACADRKILIPMEGGAESLNA 241 Query: 266 SNAAAVALYITQNHF 280 + A+AV ++ Sbjct: 242 AVASAVLMFEAGRQR 256 >gi|119474664|ref|ZP_01615017.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2143] gi|119450867|gb|EAW32100.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2143] Length = 247 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 120/243 (49%), Gaps = 8/243 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTID 102 E +++G+H V A L S +I +L + + + L KTVP + +D Sbjct: 2 SEEHWVFGIHAVEALLQGQSNRIEELWLQQGRNDKRINELQLHARQVGVKCKTVPREELD 61 Query: 103 KIV-----GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 K V G A + L LD + + LL++LD V DPHN+GA LR+A A Sbjct: 62 KQVDGRHQGVVAFTKPAQTLRDRDLKEMLDGLDHPPLLLILDGVTDPHNLGACLRTADAA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D +I K S +A + K A GA E +PYI+++NL ++ + G G + +++ Sbjct: 122 GVDAVIAPKDSSAPLNATVRKVACGAAEVVPYIQVTNLARTMKDIQGRGIWITGTAGEAE 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + Q +AL++GAEGKG+R T+E + +L M G + +LNVS A V L+ Sbjct: 182 QSVYQANLTGPVALVMGAEGKGMRRLTRENCDYLINLPMAGSVSSLNVSVATGVCLFEAV 241 Query: 278 NHF 280 Sbjct: 242 RQR 244 >gi|253689806|ref|YP_003018996.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756384|gb|ACT14460.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 243 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R ++ Q +DK Sbjct: 2 SEIIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELEAQGIVIQVANRQWLDKQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L++LD V DPHN+GA LR+A Sbjct: 62 ADDAVHQGIVAKVKEGRKYQENDLPALLDNLETPFLLILDGVTDPHNLGACLRNADGAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A + K A GA E +P I ++NL ++ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241 Query: 280 FA 281 A Sbjct: 242 RA 243 >gi|241758743|ref|ZP_04756856.1| RNA methyltransferase, TrmH family [Neisseria flavescens SK114] gi|241320951|gb|EER57164.1| RNA methyltransferase, TrmH family [Neisseria flavescens SK114] Length = 263 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 94/283 (33%), Gaps = 27/283 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M LI+ ++E++ K + +++ + L GVH + Sbjct: 4 MKLITSAQNEQL------------------KHLFRLLTQAKARRESGETVLEGVHLLQTY 45 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALET 118 L + Q+ + L+ + V + + KI + Sbjct: 46 LQSGGTP-KQVYLPEKKQQHLEIQEITAQLDEGLITWVGNEALSKITS-LTDADDVMTWI 103 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L + + +VL+ V DP N G ILRSA A I+ S + + Sbjct: 104 DIPQQAGLPSDGDC---VVLERVQDPGNAGTILRSAAAAGIRQIVCGNDSVDIWSPKVLR 160 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + GA + L+ ++ + T + + A + G EG Sbjct: 161 AGMGAHFLLSIFNRVELSAWMETYQHQIWATALGGRNIGLYEMD--LSQSCAWVFGNEGS 218 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G+ +E A + + M G ++LNV+ AA V L+ Sbjct: 219 GVSETVKEKADACVKIPMLGQTESLNVAMAATVCLFEQMRQRI 261 >gi|22299511|ref|NP_682758.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus BP-1] gi|22295694|dbj|BAC09520.1| tll1968 [Thermosynechococcus elongatus BP-1] Length = 259 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 103/280 (36%), Gaps = 27/280 (9%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 +I+ ++++ + S++ H+ K R +L L G H + AL Sbjct: 2 IITSRQNQLVRSIRKLHHRKYR---------------------QGHLLLEGTHLIQEALA 40 Query: 63 NPSRKIFQLL--ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + A + + W L V + + + A Sbjct: 41 SGYHLSVVCYTSAWQAKQSPTFWQRLLHRSDRAVEVSEEVLAALC----TTTTPDGVVAV 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + L + L + DP N+G I+R+A A +G++ + + +++ Sbjct: 97 ADYTPLPTLPLQSLGLCLVTLQDPGNLGTIIRTAAAVGVEGLLLSADCVDMTHPKVLRAS 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 +G +P +++ L+ + G+Q + + Q L++G EG+GL Sbjct: 157 AGQWFRLPMQTVTDGLATLKTYQAQGWQIVVTRPTAPLIYWQADFCQPTLLVMGNEGQGL 216 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 P Q+ + + + +++LNV+ A AV LY Sbjct: 217 PPAYQDASFTALRIPQEPNVESLNVAIATAVLLYEVYRQR 256 >gi|227325971|ref|ZP_03829995.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 243 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R H ++ Q +DK Sbjct: 2 SEIIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELEAHGIVIQVANRQWLDKQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L++LD V DPHN+GA LR+A Sbjct: 62 AEDAVHQGIVAKVKEGRKYQENDLPAMLDNLETPFLLILDGVTDPHNLGACLRNADGAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A + K A GA E +P I ++NL ++ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241 Query: 280 FA 281 A Sbjct: 242 RA 243 >gi|159900340|ref|YP_001546587.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC 23779] gi|159893379|gb|ABX06459.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC 23779] Length = 261 Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 47/261 (18%), Positives = 98/261 (37%), Gaps = 7/261 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALA 79 +++ K++++ Q+ R F+ G+ V+ A+ + I QL+ + A Sbjct: 4 SKHNPAIKQIRALRQR-REREATGLFFIEGIRNVTEAVQAQA-PIEQLIVAPDLLRSQFA 61 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 + + P+ V + + K+ A+ S + L+ Sbjct: 62 QDLVEQQRQQAIPILEVSGEVFASLSSKDGPQGLAAVVRQQWASLADVRPDQGLCWIALN 121 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 ++DP N+G ILR+ A G+I + +++ G L + + + Sbjct: 122 AISDPGNLGTILRTGDAVGAAGVILLGDCTDPYDPATGRASMGTLF-SQRLVKATWAEFS 180 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 Q GF +G + + + L++G+E +GL + Q ++ + M G Sbjct: 181 QWFGQSGFNLVGAADSASSHYRDYAYPQPLILLMGSEREGLDAEQQAQCQALVSIPMRGQ 240 Query: 260 IKALNVSNAAAVALYITQNHF 280 +LN++ A V LY Sbjct: 241 ADSLNLAVATGVLLYEILAQR 261 >gi|253681735|ref|ZP_04862532.1| rRNA methylase [Clostridium botulinum D str. 1873] gi|253561447|gb|EES90899.1| rRNA methylase [Clostridium botulinum D str. 1873] Length = 260 Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 57/281 (20%), Positives = 106/281 (37%), Gaps = 26/281 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN I K + I ++ K ++ +Q + G V A Sbjct: 1 MNKIESKDNSLIKDIRKL-------------------SKKKYRTQEGKFLVEGFRFVQEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + + L++ + ++ + V V + ++ LA+ Sbjct: 42 LKSTFEVPYVLISENSNEKCESFNIYDLIQENTKVYLVRDDILKELCDTNNPQGILAVV- 100 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + ++ +++D + DP N+G I+RSA A G+ITTK + + Sbjct: 101 ---NNKVMEIEDQKGFYVLVDRIQDPGNMGTIIRSANASGALGVITTKGTVDVYNDKTLR 157 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 S G++ IP I +N L+ + S GF+ + S D++ K + +G EG Sbjct: 158 STMGSIFKIPIIEDNNF-QILKILKSKGFKLVVSSLDTENNFYDIDLTGKSIICVGNEGN 216 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 G+ E + MPG ++LN AA++ +Y Sbjct: 217 GVSDYIYELGDEKVKIPMPGDAESLNAGVAASIMMYEVVRQ 257 >gi|325128109|gb|EGC51004.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis N1568] Length = 250 Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 114/238 (47%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V V +D I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAIS-K 65 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+A L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I+ K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 126 ISPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|167758621|ref|ZP_02430748.1| hypothetical protein CLOSCI_00961 [Clostridium scindens ATCC 35704] gi|167663817|gb|EDS07947.1| hypothetical protein CLOSCI_00961 [Clostridium scindens ATCC 35704] Length = 263 Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 99/257 (38%), Gaps = 6/257 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--D 84 + K + + +K + + + G+ P + ++ A+++ + D Sbjct: 7 NAKVKHLANLKRKRKLRDEEGVFLVEGIRMFRE---TPKMLLKEVYASESFYKKERRMTD 63 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVND 143 L + T+ V QG+ L +A L+VL+ + D Sbjct: 64 EALKGSGAYLEILSDTVFGYVSDTKTPQGILCVVKQLDYRLEEAAAGRAAHLIVLNRLQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ILR+A GI+ + + +S G++ +P+ +L + ++ Sbjct: 124 PGNLGTILRTAEGAGVTGILLDQECVDIYNPKTIRSTMGSIYRMPFYYSQDLKKDIGRLK 183 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + ++ ++ A ++G EG GL + + A + + M G +++L Sbjct: 184 DKGICIYAAHLNGRQDYDEADYTKPCAFLIGNEGNGLDEEIAQQADTYIKIPMKGRVESL 243 Query: 264 NVSNAAAVALYITQNHF 280 N + A++V ++ Sbjct: 244 NAAIASSVLMFEAARQR 260 >gi|326796398|ref|YP_004314218.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas mediterranea MMB-1] gi|326547162|gb|ADZ92382.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas mediterranea MMB-1] Length = 253 Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 63/249 (25%), Positives = 112/249 (44%), Gaps = 13/249 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102 ++YG+H V AL ++ + + + + + VP + +D Sbjct: 2 SNLEWVYGIHAVENALTQQPERVKDVRFQEGRDDKKTQRLMQLCKKNGVRFQVVPRKVLD 61 Query: 103 KI---VGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILR 152 ++ + VHQG+ + + +A+ + L+++LD + DPHN+GA LR Sbjct: 62 QLFAKSKERVVHQGVVAQATMTKAKDEAELHKHVEALEETPLIIILDGITDPHNLGACLR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A ++ K S +A ++K A GA E +P ++NL ++K+ G G Sbjct: 122 SADAAGAHAVVMPKDKSAPLNATVSKVACGAAESMPVFAVTNLARTMKKLQDQGVWIFGT 181 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + ++ L A+++GAEG G+R T+E + L M G++ +LNVS A V Sbjct: 182 AGEATDMLYDHDLTIPTAIVMGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSVATGVC 241 Query: 273 LYITQNHFA 281 LY Sbjct: 242 LYEAVRQRT 250 >gi|331086557|ref|ZP_08335635.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410390|gb|EGG89822.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 262 Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 110/257 (42%), Gaps = 6/257 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K++ +KS+ ++ + GV P ++ ++ ++ + + Sbjct: 6 SNARVKELVQLQKKSKVRNEQGVFLVEGVKMYQEI---PQEQLVKVYVSETFADKQKEEI 62 Query: 86 NLPHPF-PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVND 143 N ++ + + V QG+ D L+VLD++ D Sbjct: 63 NRLKDRRKLEYLSDHVF-QYVSDTKTPQGILCVVRQSAYCLEDILEAEDAHLLVLDNLQD 121 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ILR+A GII +K + + +S G++ +P++ + +L +A+ K+ Sbjct: 122 PGNLGTILRTAEGAGVTGIIISKESVDIYNPKVIRSTMGSIYRVPFVYVEDLKEAIAKVK 181 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + G T D K ++E K A ++G EG GLR + A + + M G +++L Sbjct: 182 AHGIFTYAAHLDGKNSYDKEDYTKKTAFLIGNEGNGLRKDIADLADTWIRIPMQGQVESL 241 Query: 264 NVSNAAAVALYITQNHF 280 N + A +V ++ T Sbjct: 242 NAAIATSVLMFETARQR 258 >gi|329924982|ref|ZP_08279928.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5] gi|328940271|gb|EGG36601.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5] Length = 266 Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 102/259 (39%), Gaps = 3/259 (1%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARL 81 L + K +K +H + + G+H V AL++ + K L Sbjct: 4 LSPQNARAKGWAQLQEK-KHRDKQNKYVVEGIHLVQEALSSGADIECLAYDVDKGIPQEL 62 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + V I K+ + Q A+ +R + L++VLD + Sbjct: 63 RHITDTGQGAEWIGVSHAVISKVSDTPSPQQVFAVIRKEARQWQDLILRENGLVVVLDGL 122 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+RSA A G++ + + + +S G+L H+P + L L + Sbjct: 123 QDPGNVGTIIRSADAVGAAGVVLGRGCADLYNPKTLRSTMGSLFHLPVLEGDLL-SILPE 181 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G + + + ++ + +++G+EG+G+ P+ + MPG + Sbjct: 182 ARERGARLVTTMLEGQRSCFEYDFKGTSWIVIGSEGRGVSPEVAALVDDAIRIPMPGRAE 241 Query: 262 ALNVSNAAAVALYITQNHF 280 +LN + AA+V +Y Sbjct: 242 SLNAAMAASVLMYEALRQR 260 >gi|163843517|ref|YP_001627921.1| RNA methyltransferase [Brucella suis ATCC 23445] gi|163674240|gb|ABY38351.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis ATCC 23445] Length = 286 Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 139/288 (48%), Positives = 185/288 (64%), Gaps = 13/288 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52 M + ++ K DSHYA+LRR H D K + + LY Sbjct: 1 MTDQNSPRTPK-----DSHYARLRRQHHDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLY 55 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+HTV AA+ NP RKI ++ AT+N ARL+ PFPV+ V P+ IDK G EAVHQ Sbjct: 56 GLHTVRAAVENPQRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQ 115 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G+ +E PL + L +R S LL+VLD V DPHN+GAI+RSAVAF +ITT R+SP E Sbjct: 116 GVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 175 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S +E + ++IAL+ Sbjct: 176 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 235 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY + + Sbjct: 236 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283 >gi|226942911|ref|YP_002797984.1| RNA methyltransferase TrmH, group 3 [Azotobacter vinelandii DJ] gi|226717838|gb|ACO77009.1| RNA methyltransferase TrmH, group 3 [Azotobacter vinelandii DJ] Length = 247 Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 115/245 (46%), Gaps = 8/245 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKI 104 + +YGVH V A L + R++ +L + R+ L + + + Sbjct: 2 SDLERIYGVHAVEALLRHHPRRVKRLWLAEGRQDPRVQALLELARQARIAVGQRERRELD 61 Query: 105 VGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 E VHQG+ E +P LD LL+VLD V DPHN+GA LR+A A Sbjct: 62 EWAEGVHQGVVAEVSPSQVWGEAMLDELLDRCEGPPLLLVLDGVTDPHNLGACLRTADAA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K S + +A + K A GA E +P + ++NL L+K+ G T+G + + + Sbjct: 122 GAQAVIVPKDKSATLNATVRKVACGAAEVVPLVAVTNLARTLEKLRQRGLWTVGTAGEVE 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + L LI+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 182 QELYGVDLRGPTVLIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEAV 241 Query: 278 NHFAK 282 ++ Sbjct: 242 RQRSR 246 >gi|297583678|ref|YP_003699458.1| tRNA/rRNA methyltransferase SpoU [Bacillus selenitireducens MLS10] gi|297142135|gb|ADH98892.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus selenitireducens MLS10] Length = 251 Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 107/277 (38%), Gaps = 28/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M++I+ ++ +I + K H + + F+ G H + A Sbjct: 1 MDVIASVQNPRIKAWKKLHTK-------------------KGRDKSGLFFIEGDHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + I +L+ +N W+ PV V ++++ E Sbjct: 42 IRSAIT-IKELILEENQSLPEAWE---DPEVPVVWVTQPVLNELCETETPQG---FAAVC 94 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 P ++ + + +D V DP N+GA++R+A A G++ + + +S Sbjct: 95 EKPPLVNLPLDDGRFLFIDGVQDPGNLGAMIRTAEAAGITGVVIGDGTVDVYNGKVIRST 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+L HIP ++ + ++ + +S D ALI+G EG G+ Sbjct: 155 QGSLFHIPVQKMDL--EEAVEICKEANVPVFGTSLQGSTFNALEPQDTFALIMGNEGSGV 212 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + E ++ + G ++LNV+ A + LY + Sbjct: 213 RARLLEMTDQNLYIPIYGKAESLNVAVACGIVLYHLR 249 >gi|302874885|ref|YP_003843518.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B] gi|307690498|ref|ZP_07632944.1| RNA methyltransferase, TrmH family [Clostridium cellulovorans 743B] gi|302577742|gb|ADL51754.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B] Length = 259 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 101/265 (38%), Gaps = 9/265 (3%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 L +++ K+ + +K ++ + + G V A+ + S I + + AL Sbjct: 2 EKILSKDNNLIKETRKLKEK-KYRIEKGLFLVEGFRFVEEAVKS-SFIIKSIFIDEKALE 59 Query: 80 RLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137 +L + +P Q I E A + + + Sbjct: 60 KLSDYNIETERIHANIYIIPSQIFKTISTTETPQG----IIAVVENKEFAVKNEKGFYIY 115 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 D V DP N+G I+R+A A G+I ++ + +S G++ IP I ++ Sbjct: 116 ADKVQDPGNMGTIIRTAHASGALGVIYSQGTVDIYNEKTLRSTMGSIFRIPVILDKDMNK 175 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 + + GF+ I S D+ K + + +G EG G+ + + + MP Sbjct: 176 LKELK-AQGFKLIVSSLDTNKNFFDVDLSQMSIIAVGNEGNGVSDELYNLSDEKVKIPMP 234 Query: 258 GIIKALNVSNAAAVALYITQNHFAK 282 G ++LNV+ AA++ + K Sbjct: 235 GGAESLNVAVAASIMAFEAVRQTFK 259 >gi|237747635|ref|ZP_04578115.1| RNA methyltransferase [Oxalobacter formigenes OXCC13] gi|229378997|gb|EEO29088.1| RNA methyltransferase [Oxalobacter formigenes OXCC13] Length = 249 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 7/239 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106 ++G H V++ L + + + +L R D + +DK+VG Sbjct: 5 VIFGFHAVTSRLRHEASSVEELYVDAERSDRRMQDLLKVAKAAGVRIIQADGARLDKMVG 64 Query: 107 KEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A+ L+ LD + + LL+VLD + DPHN+GA LR A + + Sbjct: 65 TRRHQGVVAMAAPVSLARNLDELLDAIEGAPLLLVLDGITDPHNLGACLRVADSVGAHAV 124 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K + +A + K ASGA E +PYI ++NL L+++ +G + D+++ L + Sbjct: 125 IAPKDRAVGINATVQKVASGAAETVPYITVTNLARTLRQLQERDIWVVGTTDDAEESLYE 184 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +A ++G+EG+G+R T+E + + M G +++LN+S A+ + LY + Sbjct: 185 PDYSGGVAFVMGSEGEGIRRLTRENCDQLVAIPMFGSVESLNISVASGICLYEARRQRI 243 >gi|169830404|ref|YP_001716386.1| RNA methyltransferase [Candidatus Desulforudis audaxviator MP104C] gi|169637248|gb|ACA58754.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Desulforudis audaxviator MP104C] Length = 251 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 7/243 (2%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQ 99 + +YG + V AL R + ++L + A RL + P PV+ V Sbjct: 5 RDSEKQTVIYGRNPVREALR-GGRTLHKILVVRGADPRLFRELRELARPGRIPVQVVERP 63 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 +D++ HQG+A + T++ + L++VL+ + DP N+GAILR+A A Sbjct: 64 LLDRLTD-GGAHQGVAATVSVKDFATVEELLGTENPLIVVLNAIQDPRNLGAILRTAEAA 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG + R + + AK+A+GA+E++P R++N+ L++ G +G D Sbjct: 123 GVDGAVVPSRRAAPLTPAAAKTAAGAVEYLPVARVTNIALTLREFKQKGLWVVGADPDGP 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL++G E GL + S+ + M G + +LN S AAA+ +Y Sbjct: 183 VSYWDADLGGPLALVIGGEAGGLGRAVRAECDSLVRIPMSGRVGSLNASVAAALLIYEAV 242 Query: 278 NHF 280 Sbjct: 243 RQR 245 >gi|146310028|ref|YP_001175102.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Enterobacter sp. 638] gi|145316904|gb|ABP59051.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Enterobacter sp. 638] Length = 244 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 8/243 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQLASRQFLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSP-----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A L A ++ ++LD V DPHN+GA LRSA A Sbjct: 62 SEGAVHQGIIARAKPGRQYQENDLPDLIAQLDNPFFLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + + +A K A GA E++P IR++NL ++++ +G + ++ Sbjct: 122 HAVIVPRDRAAQLNATAKKVACGAAENVPLIRVTNLARTMRQLQEENIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 VYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FAK 282 K Sbjct: 242 RTK 244 >gi|271501896|ref|YP_003334922.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586] gi|270345451|gb|ACZ78216.1| RNA methyltransferase, TrmH family, group 3 [Dickeya dadantii Ech586] Length = 244 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 103/242 (42%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R V+ Q +D Sbjct: 2 SEIIYGIHAVKALLEQDPQRFLEVFTLKGREDRRLQPLIAELEASGIAVQVASRQWLDDK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 V +A D + L+VLD V DPHN+GA LRSA A Sbjct: 62 VEGAVHQGIIARVKEGRQYQENDLPGLLASHATPFLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A K A GA E +P IR++NL L+ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTLRFLQEQNIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 A Sbjct: 242 RA 243 >gi|119511316|ref|ZP_01630430.1| RNA methyltransferase TrmH, group 3 [Nodularia spumigena CCY9414] gi|119464022|gb|EAW44945.1| RNA methyltransferase TrmH, group 3 [Nodularia spumigena CCY9414] Length = 323 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 71/287 (24%), Positives = 129/287 (44%), Gaps = 16/287 (5%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 S +S ++ ++ HR + K ++ +YG H V +AL Sbjct: 30 SSIRSPRVGERDKKPVSRGTSPHRIDPHVSPVASKPP----EDSDLIYGRHPVLSALE-G 84 Query: 65 SRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 R + ++ + + + V P+ +D+I A HQG+A + AP Sbjct: 85 ERGLNRIWITTRLRYDHRFHHLLLQAKENGTVIDEVEPKRLDQITD-RANHQGIAAQVAP 143 Query: 121 LLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L +++V + + DPHN+GAI+R+A A G++ +R + ++ Sbjct: 144 HDYMELSDLIAQAKSVTDPVIVVAEGITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITS 203 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + K A+GALE+ R+ NL+ AL+++ GF G ++ +PL + I L++G Sbjct: 204 TVMKVAAGALENFSVARVVNLSRALEELKEAGFWIYGTATTGSEPLHTVKFSGPIVLVIG 263 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +EG+GL TQ + + + + G +LN S AA +ALY + Sbjct: 264 SEGEGLSMLTQRSCDVLVSIPLLGKTPSLNASVAAGMALYEIYRQRS 310 >gi|292489612|ref|YP_003532502.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430] gi|292898167|ref|YP_003537536.1| 23S_rRNA (guanosine-2'-O-)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291198015|emb|CBJ45118.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291555049|emb|CBA23125.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430] gi|312173789|emb|CBX82043.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 245 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 115/243 (47%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + ++G+H V A L++ ++ ++ K R A ++ Q +D Sbjct: 2 SEIVFGIHAVQALLDSCPQRFQEVFILKGRDDRRLQTLVKALEAQGIVIQVANKQMLDN- 60 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P L A + L++LD V DPHN+GA +RSA A Sbjct: 61 TSEGAVHQGIIARVKPGRQYQEGDLPDLLASLENPFLLILDGVTDPHNLGACMRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + +A K ASGA EHIP IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAALNATAKKVASGAAEHIPLIRVTNLARTMRVLQEANVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLHQSRMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|220930680|ref|YP_002507589.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulolyticum H10] gi|220001008|gb|ACL77609.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulolyticum H10] Length = 315 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 110/241 (45%), Gaps = 10/241 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 L G ++V AL K+F K R V +D + Sbjct: 76 LEGRNSVMEALKANRTINKLFIAKGEKEGSIRQIIALARQKGIITTEVDKIILDGMSTTR 135 Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ A +D +++LD ++DPHN GAILR+A A G Sbjct: 136 S-HQGVIAYVAVKDYVEVDDILAVAQENGEPPFIIILDEISDPHNFGAILRTANAVGAHG 194 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR + ++ +AK+++GA+E++P R++N++ ++ + +G S +K Sbjct: 195 VIIPKRRAIGLTSTVAKASAGAVEYVPVSRVTNISQTIEYLKKNNVWVVGTDSTGEKAFY 254 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + IAL++G+EG+G+ +E + ++ M G I +LN S AAA+ +Y Sbjct: 255 ESDLKGPIALVVGSEGEGMGKLVREKCDFVVNIPMQGEISSLNASVAAAIVMYEILKQRG 314 Query: 282 K 282 K Sbjct: 315 K 315 >gi|120435137|ref|YP_860823.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117577287|emb|CAL65756.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 273 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 103/265 (38%), Gaps = 5/265 (1%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 + +++ K + +KSR+ + + + G V+ AL + + Sbjct: 3 KKITSQQNKEIKWLLQLQEKSRNRRKENSFIVEGKREVNLALKGGYLPLHLYFVPELIDF 62 Query: 80 RLDWDANLPHP---FPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLL 135 + + + + + + DKI + + LA+ L L+ Sbjct: 63 QEVLEMAKANEHEAAEITEINKEVYDKIAYRGSTEGLLAVFRNIEHPVENLSFEHPFPLI 122 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +V + P NIGAILR+A A + D +I + + + +S+ G+L + Sbjct: 123 LVAEAPEKPGNIGAILRTADAAAVDAVIIANPKTDLYNPNIIRSSVGSLFTNKIATGTTS 182 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + +Q + + + + KP + A+I+G E GL + E +T + Sbjct: 183 -EIIQFLQAQKIHIYAAALQASKPYSDINFKEASAIIMGTEATGLSNEWLENSTQNIIIP 241 Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280 M G I ++NVS AA + ++ + Sbjct: 242 MHGKIDSMNVSVAAGILIFEAKRQR 266 >gi|259907185|ref|YP_002647541.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia pyrifoliae Ep1/96] gi|224962807|emb|CAX54265.1| 23S rRNA (Guanosine-2\'-O-)-methyltransferase [Erwinia pyrifoliae Ep1/96] gi|283476994|emb|CAY72886.1| putative tRNA/rRNA methyltransferase [Erwinia pyrifoliae DSM 12163] gi|310765324|gb|ADP10274.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia sp. Ejp617] Length = 245 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 116/243 (47%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + ++G+H V A L++ ++ ++ K R A ++ Q +D Sbjct: 2 SEIVFGIHAVQALLDSDPQRFQEVFILKGREDRRLQTLVKALEAQGIVIQVANKQMLDN- 60 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P L A ++ L++LD V DPHN+GA +RSA A Sbjct: 61 TSEGAVHQGIIARVKPGRQYQEGDLPDLLASLDNPFLLILDGVTDPHNLGACMRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S + +A K ASGA EHIP +R++NL ++ + +G + ++ Sbjct: 121 VHAIIVPKDRSAALNATAKKVASGAAEHIPLVRVTNLARTMRVLQEANVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|227510511|ref|ZP_03940560.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513520|ref|ZP_03943569.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227524663|ref|ZP_03954712.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227083393|gb|EEI18705.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227088147|gb|EEI23459.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227190163|gb|EEI70230.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 255 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 95/278 (34%), Gaps = 23/278 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ ++ + Q + + G H V A Sbjct: 1 MQSITSNQNNRVKEWRK-------------------MQSKKGRLSSGQYIIEGWHIVDEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + ++ N L +L+ D + + P+ I E QG+ Sbjct: 42 IKHDQQIDAVIVTDANFLDQLEVDPAV---TDTYLITPEVAKHISATE-TPQGVFAVLTT 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + ++LD++ DP NIG ++R+A A +G+I K + + + +S Sbjct: 98 ENYHESIPEKLGGSWLMLDNIQDPGNIGTMVRTADAAGMNGVIFGKGTADIYNPKVVRSM 157 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+ +D + + AL++G EG G+ Sbjct: 158 QGSQFHVRLYSGDLAVWMAAFNKHNVPVYGTELNDQAISYDDVEPTKQFALVMGNEGNGV 217 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ M G ++LNV+ A + ++ Sbjct: 218 SADLLDKTDQNLYIPMNGEAESLNVAVATGILIFHFVK 255 >gi|255994721|ref|ZP_05427856.1| RNA methyltransferase, TrmH family [Eubacterium saphenum ATCC 49989] gi|255993434|gb|EEU03523.1| RNA methyltransferase, TrmH family [Eubacterium saphenum ATCC 49989] Length = 297 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 62/286 (21%), Positives = 111/286 (38%), Gaps = 12/286 (4%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 SK +++ K + K N+ K M++ N+ ++ T F+YG + V AL + Sbjct: 15 SKLRNDVTMEGKALNRKK---NNTSRKNMKNKNRDAKKTDLGNKFFVYGRNIVEEALIHS 71 Query: 65 SRKIFQLLA--TKNALARLDWDANLPHPFPVKTVPPQTIDKIV------GKEAVHQGLAL 116 ++ I ++ K + D + + + I + + G AV A Sbjct: 72 AKYIEKIYFSSKKKKNQKGIEDLAISKGLRPEYIDDDEIAEFISENDAQGCIAVFNKFAY 131 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 D L++VLD + DP N+GAI+R+A GII K + + + Sbjct: 132 RDIDDALRLADIRGEKPLVLVLDRIEDPRNLGAIIRTARCAGVHGIIIAKDRAAGITPTV 191 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 AK + GA+ + A K + + + ++ +AL+LG E Sbjct: 192 AKVSEGAIF-SIPCIMVTNLAAALKDLKQRGFWVYAADANGDSCFEQEFGGSVALVLGNE 250 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 GKG+ + + M +LNVS AA + +Y + Sbjct: 251 GKGISKLCLNESDYKVSIPMVNDFDSLNVSVAAGILMYEIVRKNNR 296 >gi|218438771|ref|YP_002377100.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424] gi|218171499|gb|ACK70232.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424] Length = 265 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 4/255 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD 84 + K+M+ + + + + + G H + A + N S + + W+ Sbjct: 6 QNPLIKQMRKLH-RPKGRREQNLFLIEGTHLLETACSVNSSLDVVCCTPQWQTNHKQLWE 64 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + V P+ + I +A T L ++L+ + DP Sbjct: 65 KAQSLAQRTEVVTPEVLAAIATTINPDGVVASATRIFEDSLAK--SPLSLGLMLERLQDP 122 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G I+R+AVA D + T ++ + ++++G +P NL ++ Sbjct: 123 GNLGTIIRTAVATEVDQLWLTHDSVDLDNPKVLRASAGEWFRVPMRVSDNLGALIEGYKR 182 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 Q IG K + ++LG EG GL P+ + + G +++LN Sbjct: 183 QQVQVIGTLPQGNKTYWEIDFTRPTLILLGNEGAGLTPELVSLVDQQVTIPLGGGVESLN 242 Query: 265 VSNAAAVALYITQNH 279 V+ AAA+ LY + Sbjct: 243 VAIAAALLLYEAKRQ 257 >gi|23014094|ref|ZP_00053931.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1] Length = 267 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 103/235 (43%), Positives = 148/235 (62%), Gaps = 11/235 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +LYG+H VSAAL NP R+I +L+AT A L PV+T+ ID+++ + Sbjct: 36 WLYGIHAVSAALANPERRIRRLVATTEAAKSLP-----ATKIPVETMERAEIDRLLAPGS 90 Query: 110 VHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 VHQG+AL PL + T++ + L++VLD V DPHN+GAILRSA AF ++ Sbjct: 91 VHQGIALLVEPLPAITMEDIIRMADSASSALVLVLDQVTDPHNVGAILRSAAAFGALAVV 150 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 R++P E+ LAKSASGALE +P +R++N+ AL+ M GF T GL++D+ K L + Sbjct: 151 APDRHAPDETGTLAKSASGALERMPLVRVTNVVRALEDMKKGGFWTAGLAADAPKTLAEA 210 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ L+LGAEG+G+R T+E + L M G +++LNVSNAAAVALY + Sbjct: 211 ELSGKVVLVLGAEGEGMRRLTREHCDHLVRLPMCGEMESLNVSNAAAVALYEIRR 265 >gi|172035318|ref|YP_001801819.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142] gi|171696772|gb|ACB49753.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142] Length = 262 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 106/255 (41%), Gaps = 4/255 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWD 84 + K+++ + +++ + L L G H V A I + A W+ Sbjct: 6 RNPLIKQIRKLH-RTKGRREHNLLLLEGTHLVETAYKENCSLITLCYTEEWQARYPQLWE 64 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + + V + + V+ + TA T + + + +L ++++ + DP Sbjct: 65 SVSKRVKRSELVSADVLASMT--TTVNPDGVVATARFQPRTEEEITDFRLGLIIERLQDP 122 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G I+R+A A D I + ++ + ++++GA +P S+LT ++K + Sbjct: 123 GNLGTIIRTAAAVEIDAIWLSDDSVEIDNPKVLRASAGAWFQVPIFVTSDLTTVIKKHKN 182 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G + ++ + Q ++LG EG GL A + + + +++LN Sbjct: 183 HGVNIVATLPNATETYWQLQFTQPTLILLGNEGSGLSNSLIALADELVSIPLSQGVESLN 242 Query: 265 VSNAAAVALYITQNH 279 V+ A A+ LY + Sbjct: 243 VAIATALLLYEAKRQ 257 >gi|323705643|ref|ZP_08117217.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium xylanolyticum LX-11] gi|323535120|gb|EGB24897.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium xylanolyticum LX-11] Length = 248 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 120/246 (48%), Gaps = 11/246 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTID 102 + +YG + V A+N+ R+I ++ +K+A + V T T+D Sbjct: 2 KENENIIYGRNPVLEAINSG-REIEKIYVSKSAKGNISKIIKSARDKNIIVSTADNVTLD 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAV 155 K+ G HQG+ + ++ + +++LD + D HN GAI+R+A Sbjct: 61 KMSG-NGNHQGVVALCSLYKYCDVEDILEYANEKGEKPFILLLDGITDTHNFGAIIRTAE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AFS GI+ KR S ++ + K+++GA E++ ++SN+ +A+ + G +G S D Sbjct: 120 AFSAHGIVIPKRRSAVVNSTVVKTSAGATEYMKIAKVSNINNAINNLKKQGVWIVGSSVD 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +K+ + IA+++G+EG+G+ ++ + + M G + +LN S AA++ +Y Sbjct: 180 AKEDFSNVDYDQPIAIVIGSEGEGISELVKKNCDYLVKIPMMGNMNSLNASVAASIFMYE 239 Query: 276 TQNHFA 281 Sbjct: 240 VVRQRI 245 >gi|317493577|ref|ZP_07951998.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918520|gb|EFV39858.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 244 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 9/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--WDANLPH-PFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R A L ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERDPQRFLEVFVMKGREDRRLMPLIAELEQMGIVIQVANRQWLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V +A L+ + L++LD V DPHN+GA LRSA A Sbjct: 62 VEGAVHQGIIARVREGRQYQENDLPALLENLDKPPFLLILDGVTDPHNLGACLRSADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 122 VHAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTMRFLQEQNIWIVGTAGEADH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 NLYQSKMTGPMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|256821782|ref|YP_003145745.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069] gi|256795321|gb|ACV25977.1| RNA methyltransferase, TrmH family, group 3 [Kangiella koreensis DSM 16069] Length = 246 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 111/245 (45%), Gaps = 10/245 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V L S ++ +L + + + Q +D++ Sbjct: 2 SELVYGLHAVEVLLKRSSDRVERLYIQSNRHDQRSHKVVKLAQDKNIEIIQKERQELDEM 61 Query: 105 VGKEAV-------HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + + + L + + +++LD V DPHN+GA LRSA A Sbjct: 62 TDQRHQGVIAVCRPEKKKSFHEKHIPELLSQIDEAPFILILDGVTDPHNLGACLRSADAA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K + S + V+ K A GA E +P+I ++NL A++++ G G + +++ Sbjct: 122 GVHMVIAPKDNAASITDVVRKVACGAAETVPFIPVTNLVRAMKQLQEAGVWIAGTAGEAE 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + Q +A+++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 QDIYQANLKGPLAIVMGAEGEGMRRLTRENCDYLIKIPMAGEVSSLNVSVATGVTLFEAV 241 Query: 278 NHFAK 282 K Sbjct: 242 RQRIK 246 >gi|227530492|ref|ZP_03960541.1| RNA methyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227349597|gb|EEJ39888.1| RNA methyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 258 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 56/271 (20%), Positives = 101/271 (37%), Gaps = 14/271 (5%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 EK+ S+ + H K + K ++ Q L G H V+ A+ + + I Sbjct: 2 EKLTSIHNQH----------VKNWKKLQTK-KYRRQTGTYLLDGWHLVNEAVQSGVQ-IL 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 QL+ T LA +L + V V + + I A+ P D Sbjct: 50 QLIGTSEQLAAHSDLNSLTN--EVYEVTEEVMQHITDTVTPQGIAAVVPLPDAHKVPDME 107 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + LD V DP N+G ++R+A A G++ + R + S + +S G+ H+ Sbjct: 108 SLHGGWLFLDRVQDPGNVGTMVRTADAAGFAGVVVSHRSADIFSPKVIRSMQGSQFHLKL 167 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + K ALI+G EG+G+ + T Sbjct: 168 YEGDLAKWIEDFKTVNAPIYGTQLNPQAKSFRDAEPGKTFALIMGNEGQGMSDQLLSQTT 227 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + ++ M G ++LNV+ +A + ++ + Sbjct: 228 ANLYIPMRGQAESLNVAVSAGILMFQLNKNL 258 >gi|322831164|ref|YP_004211191.1| RNA methyltransferase, TrmH family, group 3 [Rahnella sp. Y9602] gi|321166365|gb|ADW72064.1| RNA methyltransferase, TrmH family, group 3 [Rahnella sp. Y9602] Length = 271 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 108/241 (44%), Gaps = 8/241 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H+V A L+N ++ ++ K + + D ++ Q +D+ Sbjct: 26 SEIIYGIHSVKALLDNDPQRFLEVFILKGRDDKRLKPLIDELEASGIVIQVASRQWLDEK 85 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L+VLD V DPHN+GA LR+A A Sbjct: 86 SEGAVHQGIIARVREGRQYQENDLPALLESLDCPFLLVLDGVTDPHNLGACLRTADAAGV 145 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A K ASGA E++P I ++NL L+ + +G + ++ Sbjct: 146 HAVIVPRDRSAKLNATAKKVASGAAENVPLINVTNLARTLRVLQEHNVWIVGTAGEADHD 205 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 206 LFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 265 Query: 280 F 280 Sbjct: 266 R 266 >gi|261345208|ref|ZP_05972852.1| RNA methyltransferase, TrmH family, group 3 [Providencia rustigianii DSM 4541] gi|282566901|gb|EFB72436.1| RNA methyltransferase, TrmH family, group 3 [Providencia rustigianii DSM 4541] Length = 245 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 113/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L N ++I ++ K R V+ Q +D Sbjct: 2 SEIIYGIHAVKALLENSPQRIKEVYILKGREDRRLMPIVHEIEAQGIVVQVANRQWMDAQ 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P L S L+VLD V DPHN+GA LRSA A Sbjct: 62 T-EGAVHQGIIANVLPGKQYQEGDLPDLLESTESPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A + K A GA E+IP IR++NL L+ + + +G + ++ Sbjct: 121 VHAVIVPKDKSAQLNATVKKVACGAAENIPLIRVTNLARTLRLLQEYNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q + IAL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKLSGSIALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 Sbjct: 241 QRT 243 >gi|188535077|ref|YP_001908874.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia tasmaniensis Et1/99] gi|188030119|emb|CAO98005.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia tasmaniensis Et1/99] Length = 245 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 114/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + ++G+H V A L++ ++ ++ K R A ++ Q +D Sbjct: 2 SEIVFGIHAVQALLDSDPQRFQEVFILKGREDRRLQTLVKALEAQGIVIQVANKQMLDN- 60 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P L ++ L++LD V DPHN+GA +RSA A Sbjct: 61 TSEGAVHQGIIARVKPGRQYQEGDLPDLLNSLDNPFLLILDGVTDPHNLGACMRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S + +A K ASGA EHIP IR++NL ++ + +G + ++ Sbjct: 121 VHAIIVPKDRSAALNATAKKVASGAAEHIPLIRVTNLARTMRVLQEANVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|153007507|ref|YP_001368722.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188] gi|151559395|gb|ABS12893.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC 49188] Length = 294 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 90/255 (35%), Gaps = 4/255 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K ++S K + Q G+ V AL R + A ++ Sbjct: 30 NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKMVEQVA 88 Query: 87 L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V V + + I ++ + + +N+ + + LD V D Sbjct: 89 ARTFAKGGLVLEVTEKIMAAITRRDNPQMVVGVFEQQYRPLANLKPKNNDVYIALDRVRD 148 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A A GII + S ++ G++ +P +++ + Sbjct: 149 PGNLGTVIRTADAVGAKGIILIGDTTDPYSLETVRATMGSVFSMPLYKVTEADFLNWRKD 208 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + N + L++G E +GL +T +A + G +L Sbjct: 209 ISGLVVGTHLKGAVDYRTIPYANKPVVLMMGNEQQGLPDSLADTCDKLARIPQAGRADSL 268 Query: 264 NVSNAAAVALYITQN 278 N++ A V LY + Sbjct: 269 NLAIATGVMLYEIRR 283 >gi|222529198|ref|YP_002573080.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor bescii DSM 6725] gi|222456045|gb|ACM60307.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor bescii DSM 6725] Length = 270 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 51/284 (17%), Positives = 116/284 (40%), Gaps = 26/284 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 IS +++E I +K H ++ + + + G+ V A+ Sbjct: 7 EFISSRENECIKRVKKLHDK-------------------KYREEFRSFIIEGLKLVKEAI 47 Query: 62 NNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLA 115 I ++ ++ A R L +K V P + + + + QG+ Sbjct: 48 EYQIECINLVIFSQQAKDRYQEFYWECKRLLQDGKIKRVIEIPDKLFEYITTTSTPQGIL 107 Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 E + ++ ++N + ++V + + DP N+G ++R A AF D ++TTK + Sbjct: 108 AECNFVDK-DINFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPK 166 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 ++ G+L H+ +R + ++ + F + + + + + + +++G Sbjct: 167 TTRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFCIVIGN 226 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E +G+ + AT + M G ++LN + AA++ LY + Sbjct: 227 ESEGVSDSFAKVATRKIKIPMVGETESLNAAVAASIVLYELRKR 270 >gi|157368686|ref|YP_001476675.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Serratia proteamaculans 568] gi|157320450|gb|ABV39547.1| RNA methyltransferase, TrmH family, group 3 [Serratia proteamaculans 568] Length = 243 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 108/242 (44%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104 + +YG+H V A L+N ++ ++ K R ++ Q +D+ Sbjct: 2 SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEATGIVIQVANRQWLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 V +A D ++ L+VLD V DPHN+GA LRSA A Sbjct: 62 VEGAVHQGIIARVREGRQYQENDLPALLESVDTPFLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A K A GA E++P IR++NL L+ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEMNVWVVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|297538456|ref|YP_003674225.1| TrmH family RNA methyltransferase [Methylotenera sp. 301] gi|297257803|gb|ADI29648.1| RNA methyltransferase, TrmH family, group 3 [Methylotenera sp. 301] Length = 251 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 108/242 (44%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V + L + ++L ++ A + V +D + G Sbjct: 6 ILFGFHAVLSRLRQHGASVQEILIDRDRMDARMKDLLKMAEAAGVRTMEVERSRLDGMAG 65 Query: 107 KEAVHQGLALETAPLLSPTLDAVR-------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ P D ++LD V DPHN+GA LR A A Sbjct: 66 MNGRHQGVIARVVDTPIPYKDIHDILESDLTEPPFFLILDGVEDPHNLGACLRVADAMGV 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K + +A + K A GA E +P+I ++NL ++++ G IG + D+ Sbjct: 126 HAVIAPKDRAVGLNATVRKVACGAAETVPFIAVTNLARTIRELKEAGVFVIGTTMDAPST 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L + IA++LGAEG G+R T ET ++ + M G +++LNVS A+ + LY + Sbjct: 186 LINTKLDGPIAIVLGAEGDGIRRLTAETCDALMTIPMYGSVESLNVSVASGICLYEARRQ 245 Query: 280 FA 281 + Sbjct: 246 RS 247 >gi|260584968|ref|ZP_05852712.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC 700633] gi|260157398|gb|EEW92470.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC 700633] Length = 282 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 78/279 (27%), Positives = 133/279 (47%), Gaps = 17/279 (6%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQK----SRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 ++S+ K + K+ ++ K S Q F+YG H V AL P R + +L Sbjct: 6 RNSNRRKGSQPKGFKKEAKAPRPKYTPESSSNEQESTDFVYGRHAVREALQQPER-VNKL 64 Query: 72 LATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 + + D H ++ VP + +VG E VHQG+ A TL+ Sbjct: 65 WVQEALSGKEITPIIDLAKEHRIQIQNVPKAKLQDLVG-EVVHQGVVASIAAYEYATLED 123 Query: 129 -------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 +++LD + DP+N+G+ILR+A A GII KR S S ++ +AK+++ Sbjct: 124 VFEKAQEKNEDPFILILDGIEDPYNLGSILRTADATGVHGIIIPKRRSVSLTSTVAKAST 183 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 GA+EH+P +R++NLT ++++ G G + K IA+++G EGKG+ Sbjct: 184 GAIEHVPVVRVTNLTQTIEQLKERGVWVFGTDMKGTDYRQWNTK-GPIAIVMGNEGKGVS 242 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ M + M G +++LN S A+A+ +Y Sbjct: 243 RIVKDAVDEMITIPMTGHVQSLNASVASALMMYEVFRSR 281 >gi|146299980|ref|YP_001194571.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] gi|146154398|gb|ABQ05252.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] Length = 262 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 100/280 (35%), Gaps = 20/280 (7%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ + + K + +K++ Q + G +S A Sbjct: 1 MKQITSVQ------------------NPFIKSLALLQEKAKARKQTGTFLIEGQREISLA 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L + + + + + + + K+ ++ LA+ Sbjct: 43 IK-GGYEIETVLFLPDLVTENQINKLVGSSVQLIEINKEVYQKLAYRDTTEGILAVAKTK 101 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + + ++ L++V + + P N+GA+LR+A A + D ++ + Sbjct: 102 SLKLSDLKLSDNPLILVAESLEKPGNVGAVLRTADAANLDAVLI-ADPKSDLYNPNIVRS 160 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 S I + + + + + + AL++G E GL Sbjct: 161 SVGCLFTNQIATGTTEEIIAFLKEKNISFYSATLQNSTSYHTQNFTAPTALVVGTEATGL 220 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 K ++ AT + M G I ++NVS AAA+ ++ + Sbjct: 221 SQKWRDEATQNIIIPMQGEIDSMNVSVAAAILIFEAKRQR 260 >gi|308271789|emb|CBX28397.1| Putative trmH family tRNA/rRNA methyltransferase yacO [uncultured Desulfobacterium sp.] Length = 270 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 71/259 (27%), Positives = 124/259 (47%), Gaps = 10/259 (3%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANL 87 + +S + + E LYG+H V A+ RK++++ K + L R Sbjct: 3 RNFKSLEKSRLEMDKSE--ILYGIHPVFEAVRAGRRKVYEIYIAKQKDSTLLRNISKLAE 60 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVN 142 P P+ +V P + KI G + A + L D +N L++LD V Sbjct: 61 PAKIPLISVKPDHLTKITGSDFQQNIAAKVSEYPLIAFEDILNSITQKNYDFLLLLDTVV 120 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+GA+ R+A+ GI+ TK S S + ++K+++GALEHI +++N+ ++++M Sbjct: 121 DPQNLGALARTALCAGVSGIVITKDRSASPTPAVSKASAGALEHIFLSKVTNMVSSIKEM 180 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G +G+ + + P+ IAL++G+EGKG+R + + + G + + Sbjct: 181 KDRGIWVVGMDAMADMPVFSCDLKGPIALVIGSEGKGIRQLVKANCDFLVSIPQKGEVSS 240 Query: 263 LNVSNAAAVALYITQNHFA 281 LN S A AVA+Y Sbjct: 241 LNASAAGAVAMYEVFRQRN 259 >gi|270265007|ref|ZP_06193270.1| hypothetical protein SOD_k00430 [Serratia odorifera 4Rx13] gi|270040941|gb|EFA14042.1| hypothetical protein SOD_k00430 [Serratia odorifera 4Rx13] Length = 243 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 108/242 (44%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104 + +YG+H V A L+N ++ ++ K R ++ Q +D+ Sbjct: 2 SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEATGIVIQVANRQWLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 V +A D ++ L+VLD V DPHN+GA LRSA A Sbjct: 62 VEGAVHQGIIARVREGRQYQENDLPGLLEGIDTPFLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A K A GA E++P IR++NL L+ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEMNVWVVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|49473698|ref|YP_031740.1| tRNA/rRNA methyltransferase [Bartonella quintana str. Toulouse] gi|49239201|emb|CAF25517.1| tRNA/rRNA methyltransferase [Bartonella quintana str. Toulouse] Length = 278 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 52/272 (19%), Positives = 102/272 (37%), Gaps = 13/272 (4%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 K+ + ++ K +++ +QK ++ ++ G+ V AL N I Sbjct: 13 KVKEITSL-------SNPIIKDLKALSQK-KNRNREGLFMAEGLKLVIDAL-NLEWTIQT 63 Query: 71 LLATKNALARLDWDANLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 L+ +K+ + + H V + ++ I ++ + + + Sbjct: 64 LIFSKSKIGDTAIENIAAHTIANGGLVIKASKKVMESITRRDNPQTAIGIFKQQWQPLEM 123 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 RN + + LD V DP N+G I+R+ A G+I + S ++ G++ Sbjct: 124 IKRRNEDVYVALDRVRDPGNLGTIIRTVDAVGAKGVILIGETTDPFSLETVRATMGSIFS 183 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 IP R H G S + + KN + L++G E +GL Sbjct: 184 IPLYRFDESAFLNWSAHFKGMVVGTHLKGSIDYRKIDFKNGPVILLMGNEKQGLPDTLAN 243 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +A + G +LN++ A A+ LY + Sbjct: 244 RCDQLARIPQSGRADSLNLAVATAIMLYEIRR 275 >gi|313891900|ref|ZP_07825502.1| RNA methyltransferase, TrmH family, group 3 [Dialister microaerophilus UPII 345-E] gi|313119675|gb|EFR42865.1| RNA methyltransferase, TrmH family, group 3 [Dialister microaerophilus UPII 345-E] Length = 272 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 60/270 (22%), Positives = 113/270 (41%), Gaps = 5/270 (1%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLA 73 +K+ + + K+ N++ + + G ++V AL N +KIF Sbjct: 3 IKNKTHKNSNKTQTVKKQFSQKNKRKTLKRSEDLF-ICGRNSVKEALNENQIKKIFIKSG 61 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG---LALETAPLLSPTLDAVR 130 + + PV+ + +DK+ + L L + Sbjct: 62 NNDQRLKDIVKIAQNKNIPVEIEEQEILDKMSDGVRNQGIVASMKPFEYSDLEEVLSKAK 121 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 L+++LD V D NIGAI+R+A ++ K S +A K+A+GA ++P Sbjct: 122 EDPLIVLLDGVEDVRNIGAIVRTAECAGVSAVLLPKHKSAPVTAAAIKTAAGAFSYLPVC 181 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 I N+ L+ + GF +G + + + + +++GAEGKG+ T++ Sbjct: 182 EIGNIRQTLEHLKEKGFWVVGADMEGELLYYESNLKGPLVIVMGAEGKGISLLTKKMCDF 241 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G + +LNVS AAA+ +Y + Sbjct: 242 LVRIPMKGKVSSLNVSVAAALLIYESVKQR 271 >gi|313201452|ref|YP_004040110.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688] gi|312440768|gb|ADQ84874.1| RNA methyltransferase, TrmH family, group 3 [Methylovorus sp. MP688] Length = 249 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 113/242 (46%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKT--VPPQTIDKIVG 106 L+G H V + L + ++L K+ + R+ NL V+ V +D + G Sbjct: 6 ILFGFHAVLSRLRQHGASVQEILIDKDRVDARMKDLINLAEGASVRLMQVERSRLDGMAG 65 Query: 107 KEAVHQGLALETAPLLSPTLDAVR-------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ P D +VLD V DPHN+GA LR A A Sbjct: 66 ANGRHQGVIARVVDTPIPYKDIHDILESDLTEPPFFLVLDGVEDPHNLGACLRVADAMGV 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K + +A + K A GA E IP+I ++NL L+++ G +G ++D+ Sbjct: 126 HAVIAPKDRAAGLNATVRKVACGAAETIPFIAVTNLARTLRELQEAGVFVVGAAADAPGN 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L + +AL+LGAEG GLR T ET ++ + M G +++LNVS A+ + LY + Sbjct: 186 LFTTKLDGPLALVLGAEGAGLRRLTAETCDTLVSIPMFGSVESLNVSVASGICLYEARRQ 245 Query: 280 FA 281 Sbjct: 246 RN 247 >gi|309380106|emb|CBX21517.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 250 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V V +D I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAIS-K 65 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+A L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLGETRRQR 243 >gi|251788405|ref|YP_003003126.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Dickeya zeae Ech1591] gi|247537026|gb|ACT05647.1| RNA methyltransferase, TrmH family, group 3 [Dickeya zeae Ech1591] Length = 244 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 103/242 (42%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R V+ Q +D Sbjct: 2 SEIIYGIHAVKALLEQDPQRFLEVFILKGREDRRLQPLIAELEAGGIAVQVANRQWLDDK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 V +A D + L+VLD V DPHN+GA LRSA A Sbjct: 62 VEGAVHQGIVARVKEGRQYQENDLPGLLAALATPFLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A K A GA E +P IR++NL L+ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTLRFLQEQNIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 A Sbjct: 242 RA 243 >gi|149377618|ref|ZP_01895356.1| probable tRNA/rRNA methyltransferase [Marinobacter algicola DG893] gi|149358091|gb|EDM46575.1| probable tRNA/rRNA methyltransferase [Marinobacter algicola DG893] Length = 245 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 12/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +++G H V A L ++ Q+ ++ + D + V + +D+ Sbjct: 3 EEYIFGWHAVEAVLKREPERLQQVWIQTGREDRRVKTVTDTLSELGVRWQVVHRKELDQR 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V VHQG+ + + D L++LD V DPHN+GA LR+A A Sbjct: 63 VA--GVHQGVVAAVSESREWSEDDLLAMLSGSEKPPFLLILDGVTDPHNLGACLRTADAV 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 ++ K S S S + K A GA E +P +R++NL ++ + G IG + ++ Sbjct: 121 GVQAVVVPKDKSASLSPTVRKVACGAAETVPLVRVTNLARFMRTIRDDGVWLIGTAGEAD 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L Q +AL++GAEGKG+R T+E + ++ M G + +LNVS A V LY Sbjct: 181 STLHQADFTGPVALVMGAEGKGMRRLTREHCDLLINIPMLGHVDSLNVSVATGVCLYEAL 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|241760483|ref|ZP_04758576.1| RNA methyltransferase, TrmH family, group 3 [Neisseria flavescens SK114] gi|241318987|gb|EER55489.1| RNA methyltransferase, TrmH family, group 3 [Neisseria flavescens SK114] Length = 249 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L + +A R D V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAIS- 64 Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L L+ + L+VLD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G +G L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGNSDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D +A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSVAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|254671350|emb|CBA08779.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis alpha153] Length = 250 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L + +A R + V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADTDRLNAIS- 64 Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCVLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|238917600|ref|YP_002931117.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750] gi|238872960|gb|ACR72670.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750] Length = 279 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 103/256 (40%), Gaps = 4/256 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S K+R + + + GV VS + KI+ + + Sbjct: 24 QVKHVISLLSKARERKKNKEYVVEGVRMVSEVPADLLVKIYMSERFHSNNPEYVHELVKK 83 Query: 89 HPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 ++ V D++ + QG+ S D + ++ LL++++++ DP Sbjct: 84 QGISSDSIEIVADNVFDRMS-QTQTPQGIMAVVRMKDSSISDMLTDNPLLILVENLQDPG 142 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ILR G+I + + +S G++ +P++ + + +DA+ + + Sbjct: 143 NLGTILRMGEGAGVTGVIMSSNTVDIYNPKTIRSTMGSIFRVPFVYVQDFSDAVSQCKNA 202 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + D K E + A ++G EG GL + A ++ + M G +++LN Sbjct: 203 GIKVYAAHLDGKNTYLGEDYREGTAFLIGNEGNGLTEDITKQADTLIRIPMQGEVESLNA 262 Query: 266 SNAAAVALYITQNHFA 281 + A + Y + Sbjct: 263 AIACTILTYEAVRQRS 278 >gi|15612676|ref|NP_240979.1| tRNA/rRNA methyltransferase [Bacillus halodurans C-125] gi|10172725|dbj|BAB03832.1| tRNA/rRNA methyltransferase [Bacillus halodurans C-125] Length = 249 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 117/244 (47%), Gaps = 12/244 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDK 103 + F+ G + + AL + R + ++ + + + + V+ VP + +D+ Sbjct: 2 DREFITGKNPIIEALRSG-RPMNKIWIGEGSQKGQMQKVLELAKEQGVLVQHVPKRKLDQ 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 ++G E HQG+ A +D +VLD V DPHN+G+ILR+A A Sbjct: 61 LIGHE-NHQGVVASVAAYEYAEMDDLFQRAAEKGEEPFFIVLDEVEDPHNLGSILRTADA 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I KR + + +AK+++GA+E++P +R++NL ++ + G IG + Sbjct: 120 AGVHGVIIPKRRAVGLTQTVAKASTGAIEYVPVVRVTNLARTMEDLKKRGLWFIGTDAKG 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + IAL++G+EGKGL +E + + M G + +LN S A ++ +Y Sbjct: 180 SEDYRGAAYDMPIALVIGSEGKGLSRLVREKCDFLVRIPMVGQVTSLNASVATSLLMYEA 239 Query: 277 QNHF 280 Sbjct: 240 YRKR 243 >gi|304405070|ref|ZP_07386730.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus YK9] gi|304345949|gb|EFM11783.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus YK9] Length = 264 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 97/257 (37%), Gaps = 5/257 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K S K +H + + G+H V AL ++ + + L Sbjct: 10 QNARAKGWASLLDK-KHRDRSGQFLVEGIHLVKEALECGAQVETIVYDGERGLPLELQQL 68 Query: 86 NLPHPFPVKTVPPQ--TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 FP V + K G ++ A+ P++ T R L++VLD V D Sbjct: 69 PALIAFPELLVSASTVVMAKCTGTDSPPPVFAVVAKPVVEETA-LFREQSLVVVLDGVRD 127 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+RSA A D ++ + + +S G+L H+P I L + Sbjct: 128 PGNVGTIIRSADAVGADAVVLGRGCVDLYNPKTVRSTMGSLFHLPVIEADLLELLPKAQE 187 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + L++G+E GL P+ E A + + G ++L Sbjct: 188 RGIRLAATSLQSAVSCYDCD-WTSATWLLMGSESDGLSPEVLELADQSVIIPIRGRAESL 246 Query: 264 NVSNAAAVALYITQNHF 280 NV+ AA V LY Sbjct: 247 NVAMAATVILYEALRQR 263 >gi|261380701|ref|ZP_05985274.1| RNA methyltransferase, TrmH family, group 3 [Neisseria subflava NJ9703] gi|284796412|gb|EFC51759.1| RNA methyltransferase, TrmH family, group 3 [Neisseria subflava NJ9703] Length = 249 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L + +A R D V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAIS- 64 Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L L+ + L+VLD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G +G L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D +A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSVAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|119493555|ref|ZP_01624220.1| tRNA/rRNA methyltransferase (SpoU) [Lyngbya sp. PCC 8106] gi|119452609|gb|EAW33791.1| tRNA/rRNA methyltransferase (SpoU) [Lyngbya sp. PCC 8106] Length = 328 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 99/256 (38%), Gaps = 8/256 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDW 83 + K+++ Q+++ + + L G H + AL + +N RL Sbjct: 68 QNPLIKQLRKL-QRTKGRREQQLFLLEGTHLIEEALATQYPLLTVCYTAQWQNRYPRLWE 126 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + V + + I A A P V +Q+ + L+ V D Sbjct: 127 SVCQAAS-RSEEVNERVLQAI----ATTVNPDGIIATAPRPQPQTVAITQIGLALETVQD 181 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A A DG+ + + + ++++GA +P +LT+ L Sbjct: 182 PGNLGTMIRTAAAAGIDGLWLSDDSVDLDHPKVLRASAGAWFRLPMAVGGDLTEQLTIAQ 241 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G Q + D+ + ++LG EG GL A + + G +++L Sbjct: 242 QQGVQIVATLPDADLTYWELDFQQPTIVVLGNEGAGLSSSLTALADQHVQIPLSGGVESL 301 Query: 264 NVSNAAAVALYITQNH 279 NV+ AA+ LY Q Sbjct: 302 NVAICAALMLYEGQRQ 317 >gi|293399197|ref|ZP_06643362.1| RNA methyltransferase, TrmH family, group 3 [Neisseria gonorrhoeae F62] gi|291610611|gb|EFF39721.1| RNA methyltransferase, TrmH family, group 3 [Neisseria gonorrhoeae F62] Length = 250 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|326202357|ref|ZP_08192226.1| RNA methyltransferase, TrmH family, group 3 [Clostridium papyrosolvens DSM 2782] gi|325987475|gb|EGD48302.1| RNA methyltransferase, TrmH family, group 3 [Clostridium papyrosolvens DSM 2782] Length = 319 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 60/241 (24%), Positives = 111/241 (46%), Gaps = 10/241 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 L G +++ AL K+F K R V +D + Sbjct: 80 LEGRNSIMEALKANRTINKLFIAKGEKEGSIRQIIAMARQKGIITTEVDKSILDGMSSTR 139 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ A +D + +++LD ++DPHN GAILR+A A G Sbjct: 140 S-HQGVIAYVAVKDYVEVDDILAAAQEKGEPPFIIILDEISDPHNFGAILRTANAVGAHG 198 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR + ++ ++K+++GA+E++P R++N++ ++ + +G S +K Sbjct: 199 VIIPKRRAIGLTSTVSKASAGAVEYVPVSRVTNISQTIEYLKKNNVWVVGTDSTGEKAFY 258 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +AL++G+EG+G+ +E + ++ M G I +LN S AAA+ +Y Sbjct: 259 ESDLKGPMALVVGSEGEGMGKLVREKCDFVVNIPMKGEISSLNASVAAAIVMYEILKQRG 318 Query: 282 K 282 K Sbjct: 319 K 319 >gi|300311188|ref|YP_003775280.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1] gi|300073973|gb|ADJ63372.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 7/237 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGK 107 ++G H V++ + + + + ++ R D + Q + +VG Sbjct: 6 IFGFHAVTSRIRHEASSVDEIYVDAERRDRRMLDLLHAAKEANVRIIQADDQRLAAMVGT 65 Query: 108 EAVHQGLALETA----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 +A A L LDAV LL++LD + DPHN+GA LR A +I Sbjct: 66 RRHQGVVAKAAALSLARTLDELLDAVVGPPLLLILDGITDPHNLGACLRVADGAGAHAVI 125 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + +A K +SGA + +PYI ++NL ++ + G IG S D++K L + Sbjct: 126 APKDRAVGLNATAMKVSSGASDTVPYITVTNLARTMRDLKERGVWIIGTSDDAEKGLYEG 185 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 AL++G+EG+G+R T+ET + ++ M G +++LNVS A+ V LY + Sbjct: 186 DFTGPTALVMGSEGEGMRRLTRETCDVLVNIPMFGSVESLNVSVASGVCLYEARRQR 242 >gi|269214830|ref|ZP_05987243.2| RNA methyltransferase, TrmH family, group 3 [Neisseria lactamica ATCC 23970] gi|269208890|gb|EEZ75345.1| RNA methyltransferase, TrmH family, group 3 [Neisseria lactamica ATCC 23970] Length = 261 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 18 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 76 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 77 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 136 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL ++++ +G IG + L Sbjct: 137 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTMRELKEYGIWIIGTDMGGESDLYH 196 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 197 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 254 >gi|240115499|ref|ZP_04729561.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|260440690|ref|ZP_05794506.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2] Length = 250 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|126652676|ref|ZP_01724837.1| rRNA methylase [Bacillus sp. B14905] gi|126590525|gb|EAZ84643.1| rRNA methylase [Bacillus sp. B14905] Length = 254 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 95/274 (34%), Gaps = 24/274 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + K + + + + G H V A Sbjct: 1 MKRIESTQ------------------NALVKYWKKLATTRKERERSGEFIVEGFHLVEEA 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L N ++ Q++ + + W + V +V + + + V Sbjct: 43 LKN-KEQVLQIIVREGVDLPMLWPIDGIAIIEVTSVVAKEFAETETSQGV-----FAICK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + + ++++D V DP NIG ++R+A A D +I K + + ++A Sbjct: 97 QPALEEEVKASWRKVLLIDAVQDPGNIGTMIRTADAAGLDAVILGKGCADVYNPKTLRAA 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP +R + P A+I+G EG G+ Sbjct: 157 QGSHFHIPVVREELTECVDFLQAQGVPVFGTALDEDAVPYSDIQHTGAFAIIMGNEGSGI 216 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +P+ + + G ++LNV+ A + LY Sbjct: 217 QPQLLAMTDQNIIIPIFGQAESLNVAVATGIVLY 250 >gi|21674445|ref|NP_662510.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS] gi|21647630|gb|AAM72852.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS] Length = 257 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 104/244 (42%), Gaps = 7/244 (2%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHP--FPVKTVPPQT 100 +P +YG + V L + + ++ N +L P + Sbjct: 12 QKPREQVVYGRNAVIELLQSKPESVEKIYLQFNTSHPKLKEIVITARRLRIPCGKARMEK 71 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLD----AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + G AL T+ + +S LL++L + DPHN+GAI+R+A A Sbjct: 72 LTLLSGTAKNQGVCALLTSVTFYTLNEVLAAPRNSSPLLVILQGLEDPHNVGAIIRTAEA 131 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I + SA + K+++GAL H+ ++ ++ AL + GF + ++ Sbjct: 132 VAADAVIMIEGKGAPISATVHKASAGALSHMRVCKVKSVVKALDLLRERGFSIVAADMEA 191 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + L++GAEG GL +T+ + + M G +++LNVS AA V LY Sbjct: 192 EHNHTDIDWKRPTVLVMGAEGSGLGSETRNRCDQIVRIPMAGCVESLNVSVAAGVMLYEA 251 Query: 277 QNHF 280 Sbjct: 252 MRQR 255 >gi|312877039|ref|ZP_07737012.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor lactoaceticus 6A] gi|311796180|gb|EFR12536.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor lactoaceticus 6A] Length = 270 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 117/284 (41%), Gaps = 26/284 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 IS +++E I +K H ++ + + + G+ V A+ Sbjct: 7 EFISSRENECIKRVKKLHDK-------------------KYREEFRSFIIEGLKLVREAI 47 Query: 62 NNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLA 115 + I ++ ++ A R L ++ V P + + + + QG+ Sbjct: 48 DYQIECINLVIFSQQAKDRYQEFYWECKRLLEDGKIERVIEVPDKLFEYITTTSTPQGIL 107 Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 E + ++ ++N + ++V + + DP N+G ++R A AF D ++TTK + Sbjct: 108 AECNFVDKG-INFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPK 166 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 ++ G+L H+ +R + ++ + F + + + + + + +++G Sbjct: 167 TIRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVTTPYGDIEISKIVPDKRFCVVIGN 226 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E +G+ + AT + M G ++LN + AA++ LY + Sbjct: 227 ESEGVSDSFAKVATRKIKIPMAGKAESLNAAVAASIVLYELRKR 270 >gi|268610377|ref|ZP_06144104.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus flavefaciens FD-1] Length = 254 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 99/244 (40%), Gaps = 7/244 (2%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + ++G + V AL + + + L +K + + + Sbjct: 9 DERSEDIIFGRNPVIEALKSDANLDCIYICGSGGSLNLIRKLAKDKGVVIKDAQEKKLSQ 68 Query: 104 IVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + G + A+ D +++ D + DPHN+GAI+R+A Sbjct: 69 LSGGASHQGVAAVGACGEYVSVEDILAVSRNKGTKPFIIICDEIEDPHNLGAIIRTAETS 128 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DGII KR S S +A + K+++GA ++P R+SNL + + G G + Sbjct: 129 GADGIIIPKRRSASLNATVFKTSAGAANYVPVARVSNLASCIDMLKENGVWIYGTDASGT 188 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + Q AL++G+EG G+ Q+ M L M G I +LN S AA + +Y Sbjct: 189 EYT-QTDFTGSCALVIGSEGFGISKLIQKKCDFMIKLPMLGKINSLNASVAAGIFMYEIL 247 Query: 278 NHFA 281 + Sbjct: 248 RQRS 251 >gi|254518665|ref|ZP_05130721.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA] gi|226912414|gb|EEH97615.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA] Length = 260 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 100/257 (38%), Gaps = 6/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + + +K ++ ++ R + L G + A + +L+ N + Sbjct: 6 SKENNFFKSIKKLKER-RFRQKEGKFILEGFRLIEEAAKANMEIEYIILSQGNEEKLYNS 64 Query: 84 DANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + + +I E +A+ ++ LD +V D V Sbjct: 65 SLKEVINDDKIYVFSSSLFLQISSTEHPQGVIAVVKNKKMTIDLDGG----FFLVCDKVQ 120 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+ A DGII TK + +S G++ ++P ++K+ Sbjct: 121 DPGNLGTIIRTGHAAGVDGIILTKGTVDIYNDKTIRSTMGSIFYVPIFYDDEDFSIIKKL 180 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G + S + K +E KI L +G EG G+ + E A+ + MPG ++ Sbjct: 181 KDNGVALVTTSLEESKNFFEENLKGKIMLAVGNEGNGISNELFELASKKVKIPMPGGAES 240 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ A ++ L+ Sbjct: 241 LNVAIATSIILFEKVRQ 257 >gi|237745438|ref|ZP_04575918.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS] gi|229376789|gb|EEO26880.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS] Length = 248 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 115/238 (48%), Gaps = 7/238 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106 ++G H V++ L + + + ++ R D + Q +DK+VG Sbjct: 5 VIFGFHAVTSRLRHEASSVEEIYVDSERSDRRMQDLLKAAKAAGIRIIAADSQRLDKMVG 64 Query: 107 KEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A+ L LD++ + LL+VLD + DPHN+GA LR A + + Sbjct: 65 TRRHQGVVAMAAPLSLARNLDELLDSIEGAPLLLVLDGITDPHNLGACLRVADSVGAHAV 124 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A + K ASGA E +PYI ++NL L+++ +G + DS K L + Sbjct: 125 IAPKDRSAGINATVEKVASGAAETVPYITVTNLARTLRQLKERDIWVVGTADDSDKSLYE 184 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A ++G+EG+G+R T+ET + + M G +++LN+S A+ + LY + Sbjct: 185 PDYAGGTAFVMGSEGEGMRRLTKETCDELVAIPMFGSVESLNISVASGICLYEARRQR 242 >gi|313668627|ref|YP_004048911.1| RNA methylase [Neisseria lactamica ST-640] gi|313006089|emb|CBN87550.1| putative RNA methylase [Neisseria lactamica 020-06] Length = 250 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V V +D I K Sbjct: 7 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAIS-K 65 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+A L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSAAWVMGNEGGGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|206580783|ref|YP_002240863.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella pneumoniae 342] gi|290512258|ref|ZP_06551625.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. 1_1_55] gi|206569841|gb|ACI11617.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella pneumoniae 342] gi|289775253|gb|EFD83254.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. 1_1_55] Length = 243 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVYILKGREDKRLLPLIHALEAQGVVIQVANRQFLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 S-EGAVHQGIIARVKPGRQYQENDLPDLLAQHDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEANVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|163756791|ref|ZP_02163900.1| 23S rRNA methyltransferase [Kordia algicida OT-1] gi|161323180|gb|EDP94520.1| 23S rRNA methyltransferase [Kordia algicida OT-1] Length = 268 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 93/260 (35%), Gaps = 6/260 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN--ALARLDW 83 + K + +KSR + L G ++ AL + I LL + R+ Sbjct: 9 QNTTIKHILQLQEKSRSRKKEGKCILEGFRELTLALE-GNYAIDTLLFYPEICSYERIQE 67 Query: 84 DANLPHPFP-VKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHV 141 P + + KI + + ++T T+ + L++V + Sbjct: 68 LLATAKNTPECIEISKEVYQKIAYRGSTEGVLAIIQTKEHSLKTITFHNKTPLILVAEAP 127 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 P NIGA+LR+A A + D + +S I + + + + Sbjct: 128 EKPGNIGALLRTADAANIDAVFI-ANPKTDLYNPNIVRSSVGCVFTTQIAMGSTAEIISF 186 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + + + + A+++G E GL + +T + M G I Sbjct: 187 LQEKDIAIYCAALTASEHYHLQNYQKATAIVVGTEATGLSDEWLNNSTQNIIIPMQGKID 246 Query: 262 ALNVSNAAAVALYITQNHFA 281 ++NVS AAA+ ++ + + Sbjct: 247 SMNVSVAAAIVIFEAKRQRS 266 >gi|288937520|ref|YP_003441579.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella variicola At-22] gi|288892229|gb|ADC60547.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella variicola At-22] Length = 243 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVYILKGREDKRLLPLIHALEAQGVVIQVANRQFLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 S-EGAVHQGVIARVKPGRQYQENDLPDLLAQHDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEANVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|268601172|ref|ZP_06135339.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|291044000|ref|ZP_06569716.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2] gi|268585303|gb|EEZ49979.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|291012463|gb|EFE04452.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2] Length = 255 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 12 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 70 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 71 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 130 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 131 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 190 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 191 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 248 >gi|225076451|ref|ZP_03719650.1| hypothetical protein NEIFLAOT_01497 [Neisseria flavescens NRL30031/H210] gi|224952130|gb|EEG33339.1| hypothetical protein NEIFLAOT_01497 [Neisseria flavescens NRL30031/H210] Length = 249 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L + +A R D V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAIS- 64 Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L L+ + L+VLD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G +G L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D +A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSVAWVMGNEGEGMRRLTREHCDMLISIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|300715048|ref|YP_003739851.1| 23S rRNA (guanosine-2\'-O-)-methyltransferase [Erwinia billingiae Eb661] gi|299060884|emb|CAX57991.1| 23S rRNA (Guanosine-2\'-O-)-methyltransferase [Erwinia billingiae Eb661] Length = 245 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + ++G+H V A L++ ++ ++ K + V+ Q +D Sbjct: 2 SEIVFGIHAVKALLDSSPQRFQEVFILKGRDDKRLQPLVKELEAQGIVVQIANRQWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ P L +S L++LD + DPHN+GA LRSA A Sbjct: 62 V-EGGVHQGIVARVKPGRQYQESDLPDLLESLDSPFLLILDGITDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A K ASGA EH+P I ++NL ++ + +G + ++ Sbjct: 121 VHAVIVPRDRSAQLNATAKKVASGAAEHVPLITVTNLARTMRVLQDANVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 NLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMSGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|319899065|ref|YP_004159158.1| tRNA/rRNA metyltransferase [Bartonella clarridgeiae 73] gi|319403029|emb|CBI76584.1| tRNA/rRNA metyltransferase [Bartonella clarridgeiae 73] Length = 271 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 135/266 (50%), Positives = 177/266 (66%), Gaps = 4/266 (1%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTS-QPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 KDSHYA+LRR +RD K Q S H Q E ++LYG+H V AAL NP R + L AT Sbjct: 7 KDSHYARLRRQYRDTKGF--LFQSSTHPKLQKEKIYLYGIHPVRAALKNPRRILRHLYAT 64 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134 NAL RL+ + + P+ P+ ++ VG EAVHQGL LET L S +L + N+ L Sbjct: 65 PNALKRLNINESSLS-CPITLCLPKKLEAFVGNEAVHQGLVLETETLKSHSLSELTNTDL 123 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++V+D + DPHN+GAI+RSAVAF IITT R+SP ES VLAK+ASGALE I YI + N Sbjct: 124 IIVMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEYITVQN 183 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L+ AL++++ F + GL S+ + PLE + +KI+L+LGAE KGLR KT+ET +A L Sbjct: 184 LSQALKELNQMNFISFGLDSEGELPLEIALTGNKISLVLGAESKGLRQKTRETVYKLARL 243 Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280 MPG IK+LNVSNAA +ALY + Sbjct: 244 DMPGDIKSLNVSNAATIALYAAHKYL 269 >gi|303228929|ref|ZP_07315739.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica ACS-134-V-Col7a] gi|302516343|gb|EFL58275.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica ACS-134-V-Col7a] Length = 245 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 110/239 (46%), Gaps = 8/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPFPVKTVPPQTIDKIVGK 107 ++ G + V AL L++ L V+ P + +++ Sbjct: 4 YIVGRNAVKEALKAGRSIQRILVSDDKIKTGLSDIVGLAKSKGIEVRPTPVKQMNRY-ET 62 Query: 108 EAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + HQG+ + L ++ + LL++ D V DPHN+GAI+R+A + Sbjct: 63 DVPHQGVIAFVNAVEFKDLGEVLQESNHENPLLILTDGVEDPHNMGAIIRTAECVGATAV 122 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + KR++ +A +AK+++GA+E IP +++ N+T ++++ GF +G + + L + Sbjct: 123 LIPKRHNAPINATVAKTSAGAVEQIPLVQVGNVTQTIKQLQKQGFWVLGAHMEGDRTLYE 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 L++G EGKG+ +E + + M G + +LN S AAA+ +Y Sbjct: 183 ADLTIPTVLVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAILMYEAVRQRT 241 >gi|292670592|ref|ZP_06604018.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Selenomonas noxia ATCC 43541] gi|292647758|gb|EFF65730.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Selenomonas noxia ATCC 43541] Length = 272 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 69/262 (26%), Positives = 116/262 (44%), Gaps = 10/262 (3%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDA 85 R K +Q+ + + L G H V A+ LLA + R D Sbjct: 3 RRMKH-TEQHQRGTRPVEHRSDILAGRHAVMEAMKAGRGINRILLADGLHGSGVRELRDL 61 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVL 138 + V +D V + HQG+ AP+ +++ LL++L Sbjct: 62 AREYGVATDVVSRSKLDAAVPEGVRHQGVIAYAAPVSYVSVEEIIAAARARGEDPLLLLL 121 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DP N+GA+LR+A A GI+ +R+S + +A+ ++GALE++P RI N+ Sbjct: 122 DGIEDPQNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQT 181 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ + GF G D + ++ + L++G+EG+G+ T+E L M G Sbjct: 182 MRALKEQGFWIAGADMDGTETYDRANLTGALVLVIGSEGRGMSRLTREICDFTVRLPMCG 241 Query: 259 IIKALNVSNAAAVALYITQNHF 280 I +LN S A A+ +Y Q Sbjct: 242 KINSLNASAAGAILMYEAQRQR 263 >gi|317123114|ref|YP_004103117.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter marianensis DSM 12885] gi|315593094|gb|ADU52390.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter marianensis DSM 12885] Length = 298 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 8/238 (3%) Query: 51 LYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G V L +P ++ + A PV+ V P I++ + Sbjct: 51 VEGRRPVLELLGSAHPVHRVLVARGRRGAAIAELEQRARARGVPVEEVDPVEIERRAQTD 110 Query: 109 AVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 LAL LD + LL++ + DPHN+GA+ R+A A G Sbjct: 111 THQGVLALAAPLPRYDLLDLLDRAAGAGQPPLLVICAEIQDPHNLGAVFRTAEAAGAHGA 170 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + S A + KS++GAL H+P ++NL +++++ G + + +P ++ Sbjct: 171 VVPVHRSAPLGATVFKSSAGALVHLPVAEVTNLARSVEQLKERGVWVVAADPEGAEPYDR 230 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A++LG+EG+G+ P + + M G + +LNVS AA V L+ Sbjct: 231 WDWTQPVAVVLGSEGRGVPPLVRRRCDGRVTIPMAGRVGSLNVSVAAGVLLFEAARQR 288 >gi|309704685|emb|CBJ04035.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ETEC H10407] Length = 243 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEIIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L++LD V DPHN+GA LRSA A Sbjct: 62 SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|253999430|ref|YP_003051493.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4] gi|253986109|gb|ACT50966.1| RNA methyltransferase, TrmH family, group 3 [Methylovorus sp. SIP3-4] Length = 249 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 113/242 (46%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKT--VPPQTIDKIVG 106 L+G H V + L + + ++L K+ + R+ NL V+ V +D + G Sbjct: 6 ILFGFHAVLSRLRQHAASVQEILIDKDRVDARMKDLINLAEGASVRLMQVERSRLDGMAG 65 Query: 107 KEAVHQGLALETAPLLSPTLDAVR-------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ P D +VLD V DPHN+GA LR A A Sbjct: 66 ANGRHQGVIARVVDTPIPYKDIHDILESDLTEPPFFLVLDGVEDPHNLGACLRVADAMGV 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K + +A + K A GA E IP+I ++NL L+++ G +G ++D+ Sbjct: 126 HAVIAPKDRAAGLNATVRKVACGAAETIPFIAVTNLARTLRELQEAGVFVVGAAADAPGN 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L +AL+LGAEG GLR T ET ++ + M G +++LNVS A+ + LY + Sbjct: 186 LFTTKLAGPLALVLGAEGAGLRRLTAETCDTLVSIPMFGSVESLNVSVASGICLYEARRQ 245 Query: 280 FA 281 Sbjct: 246 RN 247 >gi|240123348|ref|ZP_04736304.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|240128052|ref|ZP_04740713.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] Length = 250 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDILENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|240080889|ref|ZP_04725432.1| RNA methylase [Neisseria gonorrhoeae FA19] gi|240112748|ref|ZP_04727238.1| RNA methylase [Neisseria gonorrhoeae MS11] gi|240117794|ref|ZP_04731856.1| RNA methylase [Neisseria gonorrhoeae PID1] gi|254493607|ref|ZP_05106778.1| RNA methylase [Neisseria gonorrhoeae 1291] gi|268597006|ref|ZP_06131173.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae FA19] gi|268598815|ref|ZP_06132982.1| RNA methylase [Neisseria gonorrhoeae MS11] gi|226512647|gb|EEH61992.1| RNA methylase [Neisseria gonorrhoeae 1291] gi|268550794|gb|EEZ45813.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae FA19] gi|268582946|gb|EEZ47622.1| RNA methylase [Neisseria gonorrhoeae MS11] Length = 250 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEGILENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|330720741|gb|EGG98965.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma proteobacterium IMCC2047] Length = 244 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 12/245 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104 ++G+H V A L + ++ ++L ++ R V V +++ Sbjct: 1 MEIVFGIHAVQALLQRNAGRVERVLIQQDKFNGRVRELMQLANKKKVRVDQVDRDELEQH 60 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 HQG+ S L + L++VLD V D HN+GA LRSA A Sbjct: 61 AD--GNHQGVVAICKNQKSLNEADLDQLLEEVSQPLVLVLDGVTDTHNLGACLRSADAAG 118 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSK 217 ++ K S ++V++K ASGA E +P+++++N + T +S Sbjct: 119 VTAVVVPKDNSADLNSVVSKVASGAAETLPFVKVTNLARTMKAMQDRGLWITGTAVDESS 178 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +PL + +++G+EGKG+R TQE + ++ M G + +LNVS A V L+ Sbjct: 179 RPLYEADLTGPRVIVMGSEGKGMRRLTQEHCDELVYIPMAGEVSSLNVSVATGVCLFEAV 238 Query: 278 NHFAK 282 K Sbjct: 239 RQRVK 243 >gi|87120578|ref|ZP_01076472.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp. MED121] gi|86164221|gb|EAQ65492.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp. MED121] Length = 270 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 62/254 (24%), Positives = 116/254 (45%), Gaps = 13/254 (5%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVP 97 + + + ++YG+H V L +I ++ + + + + V Sbjct: 13 KKITMSDLEWVYGIHAVENLLLQQPERIKEIRFQEGRDDKKIKRLLNLCRENGIKANVVA 72 Query: 98 PQTIDKI---VGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + ID++ + VHQG+A L ++ + L+++LD + DPHN+ Sbjct: 73 RREIDQLFKASQERVVHQGVAAFAKMTRSQDEADLYKLVENLDEPPLIIILDGITDPHNL 132 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA LRSA A ++ K S +A ++K A GA E +P ++NL ++K+ G Sbjct: 133 GACLRSADAAGAHALVMPKDKSAPLNATVSKVACGAAESMPVYAVTNLARTMKKLQDKGV 192 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G + ++ + + ++ A+++GAEG G+R T+E + L M G++ +LNVS Sbjct: 193 WIFGTAGEASQTIYEQDLTIPSAIVMGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSV 252 Query: 268 AAAVALYITQNHFA 281 A + LY Sbjct: 253 ATGICLYEAVRQRI 266 >gi|289422574|ref|ZP_06424417.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus anaerobius 653-L] gi|289157146|gb|EFD05768.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus anaerobius 653-L] Length = 244 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 110/242 (45%), Gaps = 13/242 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106 + G + V AL N R I +++ K + + ++ V +D++ Sbjct: 3 LIEGRNPVIEALKNN-RPIEKIMVNKGSKEGSIKKIIGMAKDNNIIIQQVDRHKLDEMSE 61 Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 A HQG+ T+ + L + ++LD + DPHN+G+I+R+A A Sbjct: 62 SHA-HQGVIALTSDYVYYELSDILKKAREKEEDPFFIILDGITDPHNLGSIIRTADAVGA 120 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 GII KR S + ++AK+++GA+E++P +++N+ + ++++ G Sbjct: 121 HGIIIPKRRSVHITPIVAKASAGAVEYVPVCKVTNIVNTIKQLKEEGLWIA-AVDMGGDA 179 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q +AL++G+EG+G+ T+E + M G + +LN S A + LY Sbjct: 180 FYQTNLTGPLALVVGSEGEGISRLTKENCDFTVSMPMSGNVTSLNASVAGGILLYEVYRQ 239 Query: 280 FA 281 Sbjct: 240 RN 241 >gi|209921669|ref|YP_002295753.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli SE11] gi|209914928|dbj|BAG80002.1| putative RNA methyltransferase [Escherichia coli SE11] Length = 243 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + L A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLLLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L++LD V DPHN+GA LRSA A Sbjct: 62 SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|160934427|ref|ZP_02081814.1| hypothetical protein CLOLEP_03300 [Clostridium leptum DSM 753] gi|156867100|gb|EDO60472.1| hypothetical protein CLOLEP_03300 [Clostridium leptum DSM 753] Length = 270 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 96/258 (37%), Gaps = 4/258 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + + K + ++ Q E GV A + R I ++ T+ AL R Sbjct: 7 SKENPAVKHAARLLKSAKFRRQEEAFLAEGVRLCRDAAYSGVR-ILRMFYTEEALERYPK 65 Query: 84 DANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 D L + Q + + + LD + S L+ L+ + Sbjct: 66 DVELLREKAERAFLLSQQLAGGLSATVTPQGIFCVCAMLDKTDCLDKMDASGQLLGLEDI 125 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-RISNLTDALQ 200 DP N+G +LR+A A G+I T+ S + + + GA+ +P + Sbjct: 126 QDPSNLGTVLRTAEALGIGGVILTRGCCDIYSPKVLRGSMGAVFRLPMALVETMPPAVNA 185 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + +P+ Q + + +++G EG GL+P+T + M G Sbjct: 186 LEQKGFVTMAAVPDREAEPITQVLFSSPSIVLVGNEGNGLKPETIRACQRRVTIPMLGRA 245 Query: 261 KALNVSNAAAVALYITQN 278 ++LN S AA++ ++ Sbjct: 246 ESLNASVAASLLMWEMMR 263 >gi|295398832|ref|ZP_06808826.1| TrmH family RNA methyltransferase [Aerococcus viridans ATCC 11563] gi|294972922|gb|EFG48755.1| TrmH family RNA methyltransferase [Aerococcus viridans ATCC 11563] Length = 264 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 49/253 (19%), Positives = 103/253 (40%), Gaps = 4/253 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K+++ + + + L G H V A+ + +++ + Sbjct: 10 QNQQIKELKKLFTR-KGRKKAGQYLLEGPHLVEMAVKADAEIQMIYYVPESSHQNVMQIQ 68 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 L P+ V P+ + + HQ + + +LD + ++ L++LD V DP Sbjct: 69 ALKADLPLTQVTPEVAKALSQTD-HHQDIFAVANIPQAKSLDIDQLTKGLLILDQVQDPG 127 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ++R+A AF ++ + + +S G+ + + + Q + Sbjct: 128 NLGTLIRTADAFGYRDVLLGLGTVDLYNDKVLRSMQGSHFAVNTYEVDLVEVIPQLQEAG 187 Query: 206 GFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F T ++ K K AL++G EG G+ T + A + ++ M G ++L Sbjct: 188 YFITTTELNNQAKASNAFDLKSKGKWALVMGNEGNGVSQTTSQLADAALYIPMSGSAESL 247 Query: 264 NVSNAAAVALYIT 276 NV+ A A+ +Y Sbjct: 248 NVAVAGAIVMYQF 260 >gi|268603493|ref|ZP_06137660.1| RNA methylase [Neisseria gonorrhoeae PID1] gi|268587624|gb|EEZ52300.1| RNA methylase [Neisseria gonorrhoeae PID1] Length = 255 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 12 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 70 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 71 GARHQGVVGFIDASKNHVHLEGILENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 130 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 131 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 190 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 191 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 248 >gi|284047633|ref|YP_003397972.1| RNA methyltransferase, TrmH family, group 3 [Acidaminococcus fermentans DSM 20731] gi|283951854|gb|ADB46657.1| RNA methyltransferase, TrmH family, group 3 [Acidaminococcus fermentans DSM 20731] Length = 250 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 F+ G + V AL + P K+ + + PV+ V + +D++ Sbjct: 2 EEFIVGRNAVREALRSRRPFNKVLVQEGSHGGSLSEILELAQEQKIPVEKVSREVLDRLA 61 Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 HQG+A + AP+ LD LL++LD + DP N+GA++R+A A Sbjct: 62 DGVR-HQGVAAQGAPVAFQDLDTVLARVESRGEVPLLLLLDELQDPQNVGALIRTANAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++ +R S +AV+AK ++GA+E++P I+I N+ ++++ GF G D + Sbjct: 121 VHGVLLPQRRSCPLNAVVAKISAGAIEYVPVIQIGNIPQTMKQLKKRGFWIAGADMDGED 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L++GAEGKGL +E + + M G + +LN S A + LY Sbjct: 181 QYFDANLTGPMVLVVGAEGKGLGRLVKENCDFIVRIPMLGQVSSLNASVAGGILLYDIVR 240 Query: 279 HFA 281 Sbjct: 241 QRI 243 >gi|313896352|ref|ZP_07829905.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sp. oral taxon 137 str. F0430] gi|312975151|gb|EFR40613.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sp. oral taxon 137 str. F0430] Length = 266 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 106/241 (43%), Gaps = 10/241 (4%) Query: 50 FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 L G H ++ A+ +I + R D H V V +D + Sbjct: 19 ILAGRHAITEAIKAGRGINRILIADGLHGSGVRELRDLARAHDITVDIVSRAKLDA-AAQ 77 Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A H G+ AP+ ++ LL++LD + DPHN+GA+LR+A A Sbjct: 78 GARHGGMLAYAAPVSYVPVEEIISSVRARGEEPLLLLLDGIEDPHNLGALLRTADAAGVH 137 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ +R+S + +A+ ++GALE++P RI N+ ++ + GF G Sbjct: 138 GILLPRRHSVPLTETVARVSAGALEYVPVTRIGNIAQTIRALKEDGFWIAGADMAGSDTY 197 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + L++G+EG+G+ T+E L M G I +LN S A A+ +Y Sbjct: 198 DKANLTGALVLVIGSEGRGMSRLTRELCDFTVRLPMRGKINSLNASVAGAILMYEAMRQR 257 Query: 281 A 281 Sbjct: 258 T 258 >gi|303231482|ref|ZP_07318212.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica ACS-049-V-Sch6] gi|302513825|gb|EFL55837.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica ACS-049-V-Sch6] Length = 245 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 109/239 (45%), Gaps = 8/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPFPVKTVPPQTIDKIVGK 107 ++ G + V AL L++ L V+ P + +++ Sbjct: 4 YIVGRNAVKEALKAGRSIQRILVSDDKIKTGLSDIVGLAKSKGIEVRPTPVKQMNRY-ET 62 Query: 108 EAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + HQG+ + L ++ + LL++ D V DPHN+GAI+R+A + Sbjct: 63 DVPHQGVIAFVNAVEFKDLGEVLQESNHENPLLILTDGVEDPHNMGAIIRTAECVGATAV 122 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + KR++ +A +AK+++GA+E I +++ N+T ++++ GF +G + + L + Sbjct: 123 LIPKRHNAPINATVAKTSAGAVEQISLVQVGNVTQTIKQLQKQGFWVLGAHMEGDRTLYE 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 L++G EGKG+ +E + + M G + +LN S AAA+ +Y Sbjct: 183 ADLTIPTVLVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAILMYEAVRQRT 241 >gi|292493502|ref|YP_003528941.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus halophilus Nc4] gi|291582097|gb|ADE16554.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus halophilus Nc4] Length = 249 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 111/238 (46%), Gaps = 9/238 (3%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKE 108 YG+H V AAL P+ +I L ++ R + L V + +D +V Sbjct: 7 YGLHAVRAALEQPATQIISLWLDQSRKDRAIQEITELALEQGLDFYPVNREDLDSLVPGV 66 Query: 109 AVHQGLALE------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A T L LD ++ LL++LD V DPHN+GA LR+A A G+ Sbjct: 67 RHQGVVAHCSAQPTFTEEGLFDLLDNLKAPPLLLILDGVQDPHNLGACLRTAEAAGVHGV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K + +A + K ASGA E +P++R++NL ++K+ G +G L Sbjct: 127 IAPKDRAVGLTAAVRKVASGAAERVPFVRVTNLARLMRKLRERGLWLVGTVVKGGGSLYN 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L+LGAE +GLR T E + + M G + +LNVS AA V L+ Q Sbjct: 187 TDLKGPLGLVLGAEDRGLRRLTAEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQR 244 >gi|304315921|ref|YP_003851066.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777423|gb|ADL67982.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 248 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 122/245 (49%), Gaps = 11/245 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTID 102 + +YG + V A+N+ R+I ++ +KNA + V T T+D Sbjct: 2 KENENIIYGRNPVLEAINSG-REIEKIYVSKNAKGNISKIIKAARDKNIIVSTTDNGTLD 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAV 155 K+ HQG+A + ++ + +++LD + D HN+GAI+R+A Sbjct: 61 KLS-NYGNHQGIAALCSLYKYYEVEDILEYAEKRGEKPFILLLDGITDTHNLGAIIRTAE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AFS GII KR S ++ + K+++GA E+I +++SN+ +A+ + G +G S D Sbjct: 120 AFSAHGIIIPKRRSAVVNSTVVKTSAGATEYIKIVKVSNINNAINNLKKQGVWIVGSSLD 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + +A+++G+EGKG+ TQ+ +A + M G I +LN S AA++ +Y Sbjct: 180 ADVDFQNVDYTGPVAIVIGSEGKGMSELTQKNCDYIAKIPMRGNINSLNASVAASIFMYE 239 Query: 276 TQNHF 280 Sbjct: 240 VIRQR 244 >gi|261377685|ref|ZP_05982258.1| RNA methyltransferase, TrmH family, group 3 [Neisseria cinerea ATCC 14685] gi|269145953|gb|EEZ72371.1| RNA methyltransferase, TrmH family, group 3 [Neisseria cinerea ATCC 14685] Length = 250 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|220934084|ref|YP_002512983.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp. HL-EbGR7] gi|219995394|gb|ACL71996.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp. HL-EbGR7] Length = 248 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 115/241 (47%), Gaps = 10/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 FL+G+H V AAL + L K+A R DA V+ V Q ++++ Sbjct: 6 FLFGLHAVLAALTRKPTPVTTLWVDAGRKDARMREILDAARKAGVTVERVDAQALERLCP 65 Query: 107 KEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A P L S LL+VLD V DPHN+GA LR+A A Sbjct: 66 GARHQGVVAERIQEAGPEITEADLPNLVGRVASPLLLVLDGVTDPHNLGACLRTADAAGV 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I + + + V K ASGA E +P+++++NL L ++ G IG S D+ + Sbjct: 126 DAVIVPRDRAAGLTPVARKVASGAAEVVPFVQVTNLARTLDQLKQAGVWIIGTSGDAPQT 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q IA+++GAEG+G+R T+E + ++ M G + +LNVS A V L+ Sbjct: 186 LYQADLKGPIAIVMGAEGQGMRRLTRERCDLLVNIPMQGSVSSLNVSVATGVCLFEVVRQ 245 Query: 280 F 280 Sbjct: 246 R 246 >gi|197287185|ref|YP_002153057.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis HI4320] gi|194684672|emb|CAR46614.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis HI4320] Length = 247 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 100/242 (41%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 +YG+H V A L + ++ K R A V+ Q +D Sbjct: 3 EDIIYGIHAVKALLERDPTRFKEVYVLKGREDRRLMPVIHALEEQGILVQVANRQWLDNQ 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L+VLD V DPHN+GA LRSA A Sbjct: 63 TEGAVHQGIIAKVKPSRQYQEQDLPDLLAEVGTPFLLVLDGVTDPHNLGACLRSADAAGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E +P IR++NL L+ + +G + ++ Sbjct: 123 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRLLQEENIWIVGTAGEADHT 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 183 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAMRQ 242 Query: 280 FA 281 Sbjct: 243 RI 244 >gi|329121964|ref|ZP_08250576.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Dialister micraerophilus DSM 19965] gi|327467262|gb|EGF12765.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Dialister micraerophilus DSM 19965] Length = 272 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 59/270 (21%), Positives = 113/270 (41%), Gaps = 5/270 (1%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLA 73 +K+ + + K+ N++ + + G ++V AL N +KIF Sbjct: 3 IKNKTHKNSNKTQTVKKQFSQKNKRKTLKKSEDLF-ICGRNSVKEALNENQIKKIFIKSG 61 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG---LALETAPLLSPTLDAVR 130 + + P++ + +DK+ + L L + Sbjct: 62 NNDQRLKDIVKIAQNKNIPIQIEEQEILDKMSDGVRNQGIVASMKPFEYSDLEEVLLKAK 121 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 L+++LD V D NIGAI+R+A ++ K S +A K+A+GA ++P Sbjct: 122 EDPLIVLLDGVEDVRNIGAIVRTAECAGVSAVLLPKHKSAPVTAAAIKTAAGAFSYLPVC 181 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 I N+ L+ + GF +G + + + + +++GAEGKG+ T++ Sbjct: 182 EIGNIRQTLEHLKEKGFWVVGADMEGELLYYESNLKGPLVIVMGAEGKGISLLTKKMCDF 241 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G + +LNVS AAA+ +Y + Sbjct: 242 LVRIPMKGKVSSLNVSVAAALLIYESVKQR 271 >gi|311746389|ref|ZP_07720174.1| TrmH family RNA methyltransferase [Algoriphagus sp. PR1] gi|126575275|gb|EAZ79607.1| TrmH family RNA methyltransferase [Algoriphagus sp. PR1] Length = 258 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 110/246 (44%), Gaps = 11/246 (4%) Query: 46 PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 E F++G V A++ K+ N L + + PV VP +++ Sbjct: 15 TEKDFIFGTRAVMEAIHAGKEMDKVLVQKELNNDLIKELLQVCKANAVPVVRVPDAKLNR 74 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ + + +LD V S L+++LD + D N GAI RSA Sbjct: 75 VT--RKNHQGVVAYISSIEYASLDHVIESCFSVGKSPLVLILDRITDVRNFGAIARSAEC 132 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D I+ + S ++ K+++GAL +P +R+ NL + + G + ++ S Sbjct: 133 AGIDAIVIPSKGSAQINSDAVKTSAGALNFLPVVRVKNLFYTCRDLQKMGLTLVAITEKS 192 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K + + +A+I+G+E G+ + A ++ M G I++LNVS +A VA+Y Sbjct: 193 DKDMYEADFASPVAMIMGSEEDGISNELMGIADEKVNIPMLGKIESLNVSVSAGVAIYEA 252 Query: 277 QNHFAK 282 K Sbjct: 253 MRQRRK 258 >gi|319638169|ref|ZP_07992932.1| RNA methylase [Neisseria mucosa C102] gi|317400442|gb|EFV81100.1| RNA methylase [Neisseria mucosa C102] Length = 249 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L + +A R D V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAIS- 64 Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L L+ + L+VLD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G +G L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|268681973|ref|ZP_06148835.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|268686441|ref|ZP_06153303.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|268622257|gb|EEZ54657.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|268626725|gb|EEZ59125.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] Length = 255 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 12 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 70 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 71 GARHQGVVGFIDASKNHVHLEDILENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 130 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 131 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 190 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 191 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 248 >gi|302391187|ref|YP_003827007.1| tRNA/rRNA methyltransferase (SpoU) [Acetohalobium arabaticum DSM 5501] gi|302203264|gb|ADL11942.1| tRNA/rRNA methyltransferase (SpoU) [Acetohalobium arabaticum DSM 5501] Length = 268 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 53/282 (18%), Positives = 107/282 (37%), Gaps = 21/282 (7%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 +IS K+ KI L+ + K RR + L G ++ AL Sbjct: 3 EVISSFKNSKIKFLRSLYRKKYRRRN-------------------NKFILEGSRIITDAL 43 Query: 62 NNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 + + + + + A L + + ++KI +A+ Sbjct: 44 EAKADIDQIFYSAQFLSQQKNKELLAQLREVTEIIEITDSLLNKIADTATPQGIIAIVNQ 103 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 P + ++ L +++D + DP N+G ILR+A DG+ K + ++ Sbjct: 104 PEFELEDFLIEDNDLFLIIDRIQDPGNLGTILRTADGAGVDGVFLLKGTVDIYNLKTIRA 163 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 G+L +P +++ +D + Q + ++K + N AL++G EG G Sbjct: 164 TMGSLFRVPVFGLNSPSDLTDILQMKDIQMVAADIEAKDYYYELDYNQPTALVIGNEGAG 223 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +P+T + A + + I +LN + A+ + +Y Sbjct: 224 AQPETLKLADKKVKIPLSEGIDSLNAAIASGIIMYEMVRQRK 265 >gi|304387767|ref|ZP_07369947.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091] gi|304338243|gb|EFM04373.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091] Length = 250 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSIIELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|268319892|ref|YP_003293548.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785] gi|262398267|emb|CAX67281.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785] Length = 253 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 106/251 (42%), Gaps = 6/251 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K ++ QK ++ + + + G H V AL N ++ L T AL +LD Sbjct: 8 NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEEALKNHENYLYVL-GTAEALKKLDASY 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 L ++ + K + + L S + + + +VLD++ DP Sbjct: 66 KLKDDKVIQITDAISQHLSSTKNSQDIFMVLPINQPKSFSFEYGKW----VVLDNLTDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A DG++ ++ + + +S G+ HI I+ L + Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIIQNPILEAISSFKENG 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + + K L ++AL++G E G + ETA ++ + G ++LN Sbjct: 182 LPVYVSILDKTAKSLNNCTPVPQLALVIGNEAHGASKEVIETADKKIYIPIKGKAESLNA 241 Query: 266 SNAAAVALYIT 276 + AA + +Y Sbjct: 242 AVAAGIMIYHF 252 >gi|254822714|ref|ZP_05227715.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium intracellulare ATCC 13950] Length = 310 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 74/269 (27%), Positives = 119/269 (44%), Gaps = 10/269 (3%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79 A +R NH K+ QS +++ E + G + V L + A Sbjct: 41 AHMRPNHPAAKRAQSPSRRPARGKTDETETVLGRNPVLECLRAGVPATALYVALGSEADE 100 Query: 80 RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131 RL + + VP +D++ +HQG+AL+ P D Sbjct: 101 RLTESVSRAADLGIAILEVPRTDLDRMTNNH-LHQGIALQVPPYNYAHPDDLVEAATGSP 159 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA +P R Sbjct: 160 PALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARVPVAR 219 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +NLT L G + IGL + L+ D I +++G+EGKGL ++ + Sbjct: 220 ATNLTRTLTDWADRGLRVIGLDAGGDTTLDDLDGTDPIVVVVGSEGKGLSRLVRQNCDEV 279 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G ++LN S AA V L Sbjct: 280 VSIPMAGNAESLNASVAAGVVLAEISRQR 308 >gi|332886049|gb|EGK06293.1| hypothetical protein HMPREF9456_00167 [Dysgonomonas mossii DSM 22836] Length = 263 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 92/282 (32%), Gaps = 23/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ +I ++ K++ + + G ++ A Sbjct: 1 MEKIVSLQNTRIKNIVKL-------------------SKAKERREQNLFIIEGARELNLA 41 Query: 61 LNNPSRKIFQLLATKNALAR--LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + + + V +KI +E L L Sbjct: 42 LMAGYE-VDSVFVCPELFVKTDYPHVLESISDNKKFEVSEAVFEKIAYREGSDGLLTLAK 100 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + T + ++ L++L+ V P N+GA+LR+A A D +I + A Sbjct: 101 PKGHTLTDLKLSDTPFLIILESVEKPGNLGAVLRTADAAQADAVIVC-DPATDIYNPNAI 159 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 +S + +AL + S + ++ + + A+++G E Sbjct: 160 RSSVGCVFTVQTAVCTSQEALSYLRSRNIKAYAAELNASQWYQDTDFTKPSAIVMGTEAD 219 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 GL + A + M G I +LNVS + A+ + Sbjct: 220 GLTLFWLDNADYRVKIPMRGKIDSLNVSVSTAILTFEAMRQR 261 >gi|82546579|ref|YP_410526.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella boydii Sb227] gi|81247990|gb|ABB68698.1| conserved hypothetical protein [Shigella boydii Sb227] Length = 243 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L++LD V DPHN+GA LRSA A Sbjct: 62 SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|259047742|ref|ZP_05738143.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Granulicatella adiacens ATCC 49175] gi|259035933|gb|EEW37188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Granulicatella adiacens ATCC 49175] Length = 287 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 80/281 (28%), Positives = 134/281 (47%), Gaps = 22/281 (7%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENL---------FLYGVHTVSAALNNPSRKIFQ 70 K R +R + +K ++ F++G H V AL P R + + Sbjct: 9 KKKSRNGNRSDRGRSERAEKRPRPTREHVERVEAQDVVDFVFGRHAVVEALQTPDR-VNR 67 Query: 71 LLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 + + R D V+TVP I+ +VG AVHQGL A L+ Sbjct: 68 VFIQEGTSGRDAAKVIDLAREKGIQVQTVPKTKIEDLVG-NAVHQGLVASIAAYEYADLE 126 Query: 128 A-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 +++LD V DPHN+G+ILR+A A GII KR S S +A +AK++ Sbjct: 127 DVFKKAEEKGEDPFIVILDGVEDPHNLGSILRTADATGVHGIIIPKRRSASLTATVAKAS 186 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 +GA+EH+P +R++NLT ++++ + G G + + K +A+++G EGKG+ Sbjct: 187 TGAIEHVPVVRVTNLTQTIEQLKARGVWVFGTDMNGTDYRKWNTK-GPLAIVMGNEGKGV 245 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +E+ M + M G +++LN S A+A+ +Y + + Sbjct: 246 SRIVKESVDEMVTIPMVGHVQSLNASVASALMMYEVFRNRS 286 >gi|259046651|ref|ZP_05737052.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC 49175] gi|259036816|gb|EEW38071.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC 49175] Length = 256 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 55/274 (20%), Positives = 95/274 (34%), Gaps = 25/274 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS K+EKI L A + + L G H V A Sbjct: 1 MESISSPKNEKIKELVKLQTA-------------------KGRKKAGMYLLEGEHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + R +L+ + + V V K+ QG+ Sbjct: 42 IK--ERAQIKLIVVTSNRLEDYKNLLAQTDVQVLVVSQDVFHKLS-MTETAQGILAVVEI 98 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + L + +VLD V DP N+G I+R+A A D ++ + + +S Sbjct: 99 VKQEIL---PHKGRFIVLDAVQDPGNLGTIVRTADAAGFDAVVLGTGTVDLYNDKVLRSM 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP + + + K +A+++G EG+G+ Sbjct: 156 QGSHFHIPVFQANLQEYLPILKEKGVQVAVTALHRDSKDYSVLQGATDVAIVVGNEGQGV 215 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A + + + G ++LNVS A+A+ +Y Sbjct: 216 SDDVIDLADVVVTIPIFGKAESLNVSIASALLMY 249 >gi|118444322|ref|YP_877839.1| rRNA methylase [Clostridium novyi NT] gi|118134778|gb|ABK61822.1| rRNA methylase [Clostridium novyi NT] Length = 262 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 57/281 (20%), Positives = 104/281 (37%), Gaps = 26/281 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MNLI K + I ++ +K ++ Q E + G V A Sbjct: 1 MNLIESKDNTLIKYVRKL-------------------RKKKYRVQEEKFLVEGFRFVEEA 41 Query: 61 LNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + + L+A + ++ V V + + ++ Sbjct: 42 LKSTFQVSHMLIAESAIEKCNSFNILNSVDENTKVSLVKDEILKELCETNNPQG----II 97 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 A + + + + +++D V DP N+G I+RSA A G+I TK + + Sbjct: 98 AVVDNKKISIEDKNGFYILIDKVQDPGNMGTIIRSANASGALGVIVTKGTVDIYNDKTLR 157 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 S G++ IP I ++ GF+ I S D++ K+ + +G EG Sbjct: 158 STMGSIFKIPIIEDNDFEVINDLK-LKGFKLIVSSLDTENNFFDIDLTKKVIICVGNEGN 216 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 G+ + + MPG ++LNV AA++ +Y Sbjct: 217 GVSDEVYNLGDERVKIPMPGDAESLNVGVAASIMMYEVVRQ 257 >gi|332531978|ref|ZP_08407862.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Pseudoalteromonas haloplanktis ANT/505] gi|332038605|gb|EGI75048.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Pseudoalteromonas haloplanktis ANT/505] Length = 247 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 108/243 (44%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKI 104 N ++G H+V A L + + ++ A K + D V+ + + +D Sbjct: 3 NELIFGFHSVEAILESEPERFVEIYALKGRDDKRSTPIIDEARKFGISVQFMQRKALDSK 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 E HQG+ + ++ L+VLD + DPHN+GA LRSA A Sbjct: 63 SKGE-QHQGIIANVKAAPTFNEKDLDAIIAREDTPFLLVLDGITDPHNLGACLRSADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + K A GA E +P I+++NL L+++ G +G + ++ Sbjct: 122 VHAVIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGETDN 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +A+++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 HVFDASLTGPMAIVMGAEGEGMRRLTREHCDMLVKIPMAGTVSSLNVSVATGICLFEVLR 241 Query: 279 HFA 281 Sbjct: 242 QRN 244 >gi|17988081|ref|NP_540715.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|256045941|ref|ZP_05448813.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|260563222|ref|ZP_05833708.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|265992352|ref|ZP_06104909.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|17983831|gb|AAL52979.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260153238|gb|EEW88330.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|263003418|gb|EEZ15711.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] Length = 297 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 92/277 (33%), Gaps = 8/277 (2%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + + K+ +K+ + K ++S K + Q G+ V AL Sbjct: 17 HRPEHPKVGQVKEVT----SLANPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQD 71 Query: 65 SRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 R + A + V V + I I ++ + Sbjct: 72 WRIKTLVFAKSGKGNKTVEQVAARTFAKGGLVLEVTEKVISAITRRDNPQMVAGVFEQQY 131 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 + + + + LD V DP N+GA++R+A A G+I + S ++ Sbjct: 132 HQLAGLKPKGNDVYVALDRVRDPGNLGAVIRTADAVGAKGVILIGDTTDPYSLETVRATM 191 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G++ +P R S + G + N + LI+G E +GL Sbjct: 192 GSVFSVPLYRASEADFLNWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLP 251 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +A + G +LN++ A V LY + Sbjct: 252 DSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRR 288 >gi|313884616|ref|ZP_07818374.1| RNA methyltransferase, TrmH family [Eremococcus coleocola ACS-139-V-Col8] gi|312620126|gb|EFR31557.1| RNA methyltransferase, TrmH family [Eremococcus coleocola ACS-139-V-Col8] Length = 258 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 52/274 (18%), Positives = 101/274 (36%), Gaps = 23/274 (8%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 I+ K+++ I + H S+ + + G H V AL Sbjct: 7 ITSKQNQSIKEWRKLHT-------------------SKGRRKARAFLIEGDHLVQEALKA 47 Query: 64 PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 + L+AT L + + H + P + + A+ + Sbjct: 48 G-LPLQALMATPAYLGDHEELFDQDH-CDTYLLTPGLAQYLSQTQQDQGVFAVVESKQKP 105 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 +LD + L++LD + DP N+G ++R+A A D +I + + + ++ G+ Sbjct: 106 ASLD--PSWHRLLLLDAIQDPGNLGTMIRTADAAGFDAVILGQGCVDPYNDKVLRATQGS 163 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + H+P I + + +DK+ALI+G EG G+ Sbjct: 164 IWHLPVIHYDLKAAIPALQATKIPVLATALHKDAQIYSDLKLDDKVALIMGNEGAGVAGD 223 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A ++ M G ++LNV+ A + L+ Sbjct: 224 LIQAADHSVYIPMLGQAESLNVAVATGILLFHFN 257 >gi|120555299|ref|YP_959650.1| RNA methyltransferase [Marinobacter aquaeolei VT8] gi|120325148|gb|ABM19463.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Marinobacter aquaeolei VT8] Length = 245 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 115/243 (47%), Gaps = 12/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +++G H V A L ++ ++ ++ + DA P K V + +D+ Sbjct: 3 QEYVFGWHAVDAVLKREPERLQRVWIQTGRQDKRVKSVTDALDGLGVPWKVVHRKELDER 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V VHQG+ A T D L+VLD V DPHN+GA +R+A A Sbjct: 63 VS--GVHQGVVAAVAESREWTEDDLLAQLAASDKPPFLLVLDGVTDPHNLGACMRTADAA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K S S + V K A GA E +P++R++NL L+++ G IG + ++ Sbjct: 121 GVQAVIVPKDKSASLTPVARKVACGAAETVPFVRVTNLARFLRELKDQGVWLIGTAGEAD 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L Q +AL++GAEGKG+R T+E + ++ M G + +LNVS A V LY Sbjct: 181 ATLYQADFKGPVALVMGAEGKGMRRLTREHCDQLINIPMLGHVDSLNVSVATGVCLYEAL 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|116621924|ref|YP_824080.1| RNA methyltransferase [Candidatus Solibacter usitatus Ellin6076] gi|116225086|gb|ABJ83795.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Solibacter usitatus Ellin6076] Length = 237 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 3/233 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 L G+H V AL + ++A RL +L PV+ P ++D++ G Sbjct: 3 LLSGIHPVVEALRAGNPLERIVIAQGAGGPRLQEIIDLARQAKIPVRFEPRPSLDRLAG- 61 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + HQG+ A LD+V S++L+VLD V DPHN+GAI+R+A A +I +R Sbjct: 62 SSAHQGVVGLGAARKYADLDSVAESEMLVVLDGVEDPHNLGAIVRTAHAAGAGAVIVPER 121 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + + V+AK+A+GALEH+P +R++N+ AL+ + G GL + +Q Sbjct: 122 RAAGVTDVVAKAAAGALEHLPVVRVTNINRALEDLKERGMWIYGLDERGTESYDQIDYAK 181 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 K L+LG EGKGL + ++ + + M G I +LNVS AA V L+ + Sbjct: 182 KSVLVLGGEGKGLHEQVRKHCDVLVRIPMAGQISSLNVSVAAGVVLFEWRRRR 234 >gi|316985328|gb|EFV64277.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Neisseria meningitidis H44/76] gi|325140178|gb|EGC62705.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis CU385] Length = 261 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 18 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 76 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 77 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 136 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 137 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYH 196 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 197 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 254 >gi|192360670|ref|YP_001983449.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107] gi|190686835|gb|ACE84513.1| RNA methyltransferase, TrmH family, group 3 [Cellvibrio japonicus Ueda107] Length = 249 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 112/241 (46%), Gaps = 9/241 (3%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +YG+H V A L + +++ ++ ++ + A + V +D +V Sbjct: 4 ELVYGLHAVQALLKSAPQRVLEIYVLQGRQDQRLQKIAHAAELNQIHCNLVSRNKLDDMV 63 Query: 106 GKEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +E +A T L+ + L+VLD V DPHN+GA +RSA A Sbjct: 64 SEENHQGVVARCTPGETYDEAYLFSLLETLDEPPFLLVLDGVTDPHNLGACMRSAEAAGV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S + V K A GA E +P+I ++NL L+K+ G G + ++ + Sbjct: 124 HAVIAPKDKSAGLTPVARKVACGAAEVLPFIPVTNLARTLKKLQEKGIWLFGAAGEASQS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q IA+++GAEG GLR TQET + H+ M G + +LNVS A V L+ Sbjct: 184 LYQTRLTGPIAILMGAEGDGLRRLTQETCDQLMHIPMAGSVSSLNVSVATGVCLFEAVRQ 243 Query: 280 F 280 Sbjct: 244 R 244 >gi|329914600|ref|ZP_08276137.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Oxalobacteraceae bacterium IMCC9480] gi|327545100|gb|EGF30394.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Oxalobacteraceae bacterium IMCC9480] Length = 242 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 114/237 (48%), Gaps = 7/237 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++G H V+A L + + + ++ + + A V Q + +VG Sbjct: 2 IFGFHAVTARLRHEASTVEEIYVDTARHDQRMKDMLKAAAAVKVRVIQADDQRLSNMVGT 61 Query: 108 EAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 +A A L LDA+ LL+VLD + DPHN+GA LR A +I Sbjct: 62 RRHQGVVAKAGEVSLARNLDELLDAIDGPPLLLVLDGITDPHNLGACLRVADGAGAHAVI 121 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + +A AK ASGA E +PYI ++NL L+ + G IG + D+++ L Q Sbjct: 122 APKDRAVGLNATAAKVASGAAESVPYITVTNLARTLRDLKDRGIWLIGTTEDAEQTLYQG 181 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ALI+G+EG+G+R T ET + H+ M G +++LNVS A+ V L+ + Sbjct: 182 DFTGPTALIMGSEGEGMRRLTTETCDFLVHIPMFGAVESLNVSVASGVCLFEARRQR 238 >gi|319638350|ref|ZP_07993112.1| TrmH family RNA methyltransferase [Neisseria mucosa C102] gi|317400099|gb|EFV80758.1| TrmH family RNA methyltransferase [Neisseria mucosa C102] Length = 263 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 52/282 (18%), Positives = 95/282 (33%), Gaps = 25/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M LI+ ++E++ K + +++ + L GVH + Sbjct: 1 MKLITSAQNEQL------------------KHLFRLLTQAKARRESGETVLEGVHLLQTY 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L + L K + + V + + KI + Sbjct: 43 LQSGGTPKQVYLPEKKQQHPEIQEITAQLDEGLITWVGNEALSKITS-LTDADDVMTWID 101 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L + + +VL+ V DP N G ILRSA A I+ + S + ++ Sbjct: 102 IPKQAGLPSDDDC---VVLERVQDPGNAGTILRSAAAAGVKQIVCSNDSVDIWSPKVLRA 158 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 GA + L+ ++K + T + + A + G EG G Sbjct: 159 GMGAHFLLSIFSRVELSAWMEKYQHPIWATALGGRNIGLYEMN--LSQSCAWVFGNEGSG 216 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + +E A + + M G ++LNV+ AA V L+ Sbjct: 217 VSERIKEKAEACVKIPMLGQTESLNVAMAATVCLFEQMRQRI 258 >gi|261392720|emb|CAX50293.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Neisseria meningitidis 8013] Length = 250 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|311693514|gb|ADP96387.1| RNA methyltransferase, TrmH family, group 3 [marine bacterium HP15] Length = 245 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 111/242 (45%), Gaps = 12/242 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 F++G H V A L + Q+ ++ + D K V + +D+ V Sbjct: 4 EFVFGWHAVEAVLKREPERFQQVWIQTGRQDKRVKSITDTLDGLGVKWKVVHRKELDERV 63 Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 VHQG+ + T D L+VLD V DPHN+GA +R+A A Sbjct: 64 S--GVHQGVVAAVSESREWTEDDLLAQLAASDKPPFLLVLDGVTDPHNLGACMRTADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S S + V K A GA E +P++R++NL L+ + G IG + ++ Sbjct: 122 VQAVIVPKDKSASLTPVARKVACGAAETVPFVRVTNLARFLRSLQDQGVWLIGTAGEADA 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEGKG+R T+E + ++ M G + +LNVS A V LY Sbjct: 182 TLYQADFKGPVALVMGAEGKGMRRLTREHCDQLINIPMLGHVDSLNVSVATGVCLYEALR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|85058322|ref|YP_454024.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Sodalis glossinidius str. 'morsitans'] gi|84778842|dbj|BAE73619.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 245 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 107/241 (44%), Gaps = 8/241 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ + K R ++ V Q +D+ Sbjct: 2 SEIIYGIHAVQALLERDPQRFLDVYLLKGRDDRRLQPLLQQLENAGIVIQMVSRQWLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A A D + + LL+VLD V DPHN+GA LR A A Sbjct: 62 AEGAVHQGIVARVQAGWQYQENDLPALLTQQAAPLLLVLDGVTDPHNLGACLRCADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + + +A K ASGA E +P IR++NL L+ + +G + ++ Sbjct: 122 HAVIVPRDRAAPLNATAKKVASGAAETVPLIRVTNLARTLRLLQEHNVWIVGTAGEADHH 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS AA V+L+ Sbjct: 182 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVAAGVSLFEAVRQ 241 Query: 280 F 280 Sbjct: 242 R 242 >gi|296270012|ref|YP_003652644.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833] gi|296092799|gb|ADG88751.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM 43833] Length = 277 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 102/256 (39%), Gaps = 5/256 (1%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 K ++ K + G + AL P + +L AT A AR Sbjct: 10 PRVKAVRRL-TKRAFRDRDRAFLAEGPQAIREALRTPGVTV-ELYATTEAEARHPDIVAA 67 Query: 88 PH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV + + ++ +A+ + ++L+ VL HV DP Sbjct: 68 ARDAGVPVHRTSGEVMAELTQTVTPQGLVAVCRFVHVPLEEAVRPGARLVAVLAHVRDPG 127 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G +LR+A A D ++ T + ++++G+L H+P + + +++ Sbjct: 128 NAGTVLRTADAAGADAVVFTDASVDPYNGKCVRASAGSLFHLPVSINARFPETVRQAREA 187 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + + + + L++ + A + G E GL P+ E A + + + G ++LN+ Sbjct: 188 GLRILAADASGARTLDEVDLSRPTAWVFGNEAWGLPPELLELADEVVRVPIYGRAESLNL 247 Query: 266 SNAAAVALYITQN-HF 280 + AAAV LY + Sbjct: 248 ATAAAVCLYASARAQR 263 >gi|288553667|ref|YP_003425602.1| RNA methyltransferase [Bacillus pseudofirmus OF4] gi|288544827|gb|ADC48710.1| RNA methyltransferase, TrmH family [Bacillus pseudofirmus OF4] Length = 281 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 57/277 (20%), Positives = 111/277 (40%), Gaps = 27/277 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+E++ K H + + + G H V A Sbjct: 31 MKRIDSVKNEQVKGWKKLHTK-------------------KGRDKAGRFLIEGFHLVEEA 71 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L I +L T+ + L W+ + + V PQ + +I E A+ P Sbjct: 72 LKA-KFHIEVILMTEQTVLPLTWEV---YENDIIIVSPQVLKEISETETPQGIAAVCAIP 127 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 S +++D V DP NIG ++R+A A G++ + ++ + +++ Sbjct: 128 APP---SMTTLSGQFLLIDRVQDPGNIGTMIRTADAAGMTGVVLGEGSVDLFNSKVIRAS 184 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P IR S + + +++ E + + ALI+G EG+G+ Sbjct: 185 QGSIFHMPVIRGSLIEWVEKLKEKNIPVFGTSLTEASSYTAIEPQPE-FALIVGNEGEGV 243 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + E + ++ + G ++LNV+ A + LY + Sbjct: 244 QSELLEGSDQNIYIPIYGQAESLNVAVATGILLYYLK 280 >gi|288575697|ref|ZP_06393898.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996] gi|288567117|gb|EFC88677.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996] Length = 260 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 52/283 (18%), Positives = 87/283 (30%), Gaps = 26/283 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++E++ K + +S+ + L GVH + Sbjct: 1 MKSITSAQNEQL------------------KHLSKLLSQSKARREYGQTVLEGVHLLQVY 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L L + L + V + + KI + Sbjct: 43 LEAGYTPKQVYLPESKNTHPEIRNLISSLDEDC-ITWVGNEALSKITS-LNDADDVMTWI 100 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L + +VLD + DP N+G +LRSA A I+ S + + Sbjct: 101 EIPPQGDLPLSGDC---VVLDRLQDPGNVGTVLRSAAASGVRQIVLGNDCVDIWSPKVLR 157 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + GA + I + L + L Q N A + G EG Sbjct: 158 AGMGAHL-LLNIYSRVSLPQWLDTYQDKIWATALDGRNPSDLYQLDLNAPCAWVFGNEGS 216 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G+ + E + M G ++LNV+ AA V L+ Sbjct: 217 GVSREILEKVDGGVRIPMLGQTESLNVAMAATVCLFEQMRQRI 259 >gi|167769675|ref|ZP_02441728.1| hypothetical protein ANACOL_01009 [Anaerotruncus colihominis DSM 17241] gi|167668036|gb|EDS12166.1| hypothetical protein ANACOL_01009 [Anaerotruncus colihominis DSM 17241] Length = 256 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 66/258 (25%), Positives = 116/258 (44%), Gaps = 17/258 (6%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPF 91 N + + + G + V L R++ + + AR Sbjct: 3 NSNPKRDLEEGLVL--GRNAVIELLK-GPREVECIYICDDVPARGQPISRIVALAKEARV 59 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDP 144 PVK V + +D + HQG+A + A T++ LL++ D + DP Sbjct: 60 PVKRVDVRRLDTLANGL-NHQGVAAQAAAFHYCTVEELFARAAARGEPPLLVIADSIEDP 118 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+GAI+R+A A G+I KR +A++ ++++GA+EH+P R++NL ++++ + Sbjct: 119 HNLGAIIRTAEAAGAHGLIIPKRGGAGLTAIVGRTSAGAVEHLPVARVTNLVSTIKELKA 178 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G G + + Q AL++G+EG GL +ET ++ L M G + +LN Sbjct: 179 RGVWIYGADASGARWD-QTDLTGPSALVIGSEGFGLSRLVRETCDALLSLPMRGEVNSLN 237 Query: 265 VSNAAAVALYITQNHFAK 282 S AA + +Y K Sbjct: 238 ASVAAGILMYEAVRQRTK 255 >gi|30248779|ref|NP_840849.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas europaea ATCC 19718] gi|30180374|emb|CAD84686.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas europaea ATCC 19718] Length = 277 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 43/260 (16%), Positives = 91/260 (35%), Gaps = 7/260 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R H +KK+ +R L G+H + + L + + +++ + Sbjct: 6 SREHPLFKKLFKLQHSARQRHDEGMTLLDGIHLLQSCLASGKTPVLLIVSESGSQHPEIS 65 Query: 84 DANLPHPFPVKTVP----PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 + + T+ + G+ + ++L+ Sbjct: 66 QLLIHIDKDPQKTDCLMLSDTLFNQISPVKTPVGILALIDIPQHTLPADTYQNSFSILLE 125 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N+G++LRSA A +G+ + + + S ++ GA + +L Sbjct: 126 GIQDPGNLGSMLRSAAAAGVEGVFLSSDCADAWSPKTLRAGMGAHFSLKIHENVDLIQVA 185 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 ++ + + L + + G EG G+ + ET + MPG Sbjct: 186 RQFAGNV---VATTLHDASNLFHTDLRGAVVFVFGNEGGGISEELLETVHQRVMIPMPGC 242 Query: 260 IKALNVSNAAAVALYITQNH 279 ++LNV+ AAA+ L+ Sbjct: 243 TESLNVATAAAICLFEKVRQ 262 >gi|290968521|ref|ZP_06560060.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera genomosp. type_1 str. 28L] gi|290781517|gb|EFD94106.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera genomosp. type_1 str. 28L] Length = 250 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 ++ G ++V AL KI+ + A + V+ + +D+ Sbjct: 2 SGLAWITGRNSVLEALRAGRKIEKIYIASSPHGAALQEIMSLAKAAHIVVEERDRKALDR 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVR-------NSQLLMVLDHVNDPHNIGAILRSAVA 156 +V ++ HQG+A + P+ + + ++LD + D HN+GAI+R+A Sbjct: 62 LVPQQR-HQGVAAQAQPIAMTSWETCAATAARRGEVPFFVLLDGIEDVHNMGAIIRTAEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 ++ KR+S + + K+++GA+E++P + I N T L+ + GF IG + Sbjct: 121 AGAHAVLIPKRHSAPINETVGKTSAGAVEYMPLVSIGNTTQVLKALKKAGFWIIGADMNG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + L++G EGKG+ +E + + M G + +LN S AAA+ +Y T Sbjct: 181 EADYFHTDMTMPLVLVIGNEGKGISRLVKENCDILVQIPMFGHVNSLNASVAAALLIYET 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|302382701|ref|YP_003818524.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas subvibrioides ATCC 15264] gi|302193329|gb|ADL00901.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas subvibrioides ATCC 15264] Length = 304 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 87/257 (33%), Positives = 140/257 (54%), Gaps = 3/257 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + + S + + FL+G H V AAL NP+RK L A Sbjct: 48 NPPARAFSSAAPRPSRGKVDADGFLWGRHPVLAALANPARKGMGRLLATEDRAAEIEREG 107 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDP 144 + ++ + QT+++++ AVHQG+A + PL +L+ ++++LD + DP Sbjct: 108 TANGHKIEVMDAQTLERMLPAGAVHQGMAFKVQPLEGVSLEDLGDPAEGIIVMLDQLTDP 167 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GAI RSA+AF GI+ R+SP + LAK+A+GA E +P R++NL+ AL+++ Sbjct: 168 QNVGAIFRSALAFGARGIVVQDRHSPVLAGALAKAAAGATERLPCARVTNLSRALERLAD 227 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G++ +GL DS++ LE + + L++G+EG G+R E +A + MPG ++LN Sbjct: 228 LGWRAVGLDGDSEELLENALDHRPTVLVMGSEGDGIRRLVAEHCDVLAKIPMPGGFESLN 287 Query: 265 VSNAAAVALYITQN-HF 280 VSNAAAVALY Sbjct: 288 VSNAAAVALYEATRKQR 304 >gi|226326635|ref|ZP_03802153.1| hypothetical protein PROPEN_00485 [Proteus penneri ATCC 35198] gi|225204856|gb|EEG87210.1| hypothetical protein PROPEN_00485 [Proteus penneri ATCC 35198] Length = 247 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 99/242 (40%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 +YG+H V A L + ++ K R V+ Q +D Sbjct: 3 EEIIYGIHAVKALLERDPARFKEVYVLKGREDRRLTPVIHELEAQGILVQVANRQWLDSQ 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L+VLD V DPHN+GA LRSA A Sbjct: 63 TEGAVHQGIIAKVKPGRQYQEQDLPDLLAKVGTPFLLVLDGVTDPHNLGACLRSADAAGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E +P I+++NL L+ + +G + ++ Sbjct: 123 HAVIVPKDRSAQLNATAKKVACGAAESVPLIKVTNLARTLRFLQEENVWIVGTAGEADHT 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 183 LYQSKLTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEAMRQ 242 Query: 280 FA 281 Sbjct: 243 RI 244 >gi|291619082|ref|YP_003521824.1| RlmB [Pantoea ananatis LMG 20103] gi|291154112|gb|ADD78696.1| RlmB [Pantoea ananatis LMG 20103] Length = 259 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + ++G+H V A L ++ ++ K R A ++ + +D Sbjct: 17 SEIIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPLVTALEAQGIVIQLADRKWLDSQ 76 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ P L L+VLD V DPHN+GA LRSA A Sbjct: 77 V-EGGVHQGIVARVKPGRQYQEGDLPDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAG 135 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K ASGA E++P IR++NL L+ + + +G + ++ Sbjct: 136 AHAVIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADH 195 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 196 TVYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 255 Query: 279 HFA 281 Sbjct: 256 QRN 258 >gi|320187058|gb|EFW61769.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella flexneri CDC 796-83] gi|332087040|gb|EGI92174.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella boydii 3594-74] Length = 240 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 103/239 (43%), Gaps = 8/239 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGK 107 +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 IYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQLANRQYLDEKSDG 61 Query: 108 EAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A D + L++LD V DPHN+GA LRSA A + Sbjct: 62 AVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAV 121 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A K A GA E +P IR++NL ++ + +G + ++ L Q Sbjct: 122 IVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEADHTLYQ 181 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ + Sbjct: 182 SKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS 240 >gi|114567860|ref|YP_755014.1| tRNA/rRNA methyltransferase YacO [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338795|gb|ABI69643.1| conserved hypothetical tRNA/rRNA methyltransferase yacO [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 248 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 113/244 (46%), Gaps = 14/244 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKI 104 ++G++ VS AL R+++++ A + + + ++ + + +D++ Sbjct: 2 KELVFGINAVSEALK-GQRRVYKIYAQRERQDKRLEEILTLAREKQLKLQYLEKKKMDEL 60 Query: 105 VGKEAVHQGLALETAPLLSPTL--------DAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E HQG+ E L L++LD + DP N+GAI+R+A Sbjct: 61 C--EGKHQGIIAEVERYPYADLGQVLEKLQAQKEKPPFLLLLDGIEDPQNLGAIIRTAEC 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DGII S + +++ ++GA+EH+ IR +NL + ++ + GF +G + + Sbjct: 119 AGVDGIIIPSHKSAEVNPTVSRVSAGAVEHMAIIRENNLVNTIKYLKQEGFWVLGADAKA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ AL++G EG+G+R +E + + M G + +LN S AAA+ +Y Sbjct: 179 RQSYFNTSIPSPTALVIGGEGQGIRRLVRENCDILVRIPMFGQLNSLNASVAAALLIYEV 238 Query: 277 QNHF 280 Sbjct: 239 LRQR 242 >gi|307132421|ref|YP_003884437.1| 23S rRNA (Gm2251)-methyltransferase [Dickeya dadantii 3937] gi|306529950|gb|ADM99880.1| 23S rRNA (Gm2251)-methyltransferase [Dickeya dadantii 3937] Length = 244 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 104/241 (43%), Gaps = 8/241 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R + V+ Q +D Sbjct: 2 SEIIYGIHAVKALLEQDPQRFLEVFTLKGREDRRLQPLIAELEANGIAVQVANRQWLDDK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 V +A D ++ L+VLD V DPHN+GA LRSA A Sbjct: 62 VEGAVHQGIVARVKEGRQYQENDLPGLLASLDTPFLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A K A GA E +P IR++NL L+ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTLRFLQEQNVWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241 Query: 280 F 280 Sbjct: 242 R 242 >gi|255066315|ref|ZP_05318170.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sicca ATCC 29256] gi|255049525|gb|EET44989.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sicca ATCC 29256] Length = 249 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L + +A R + V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSITELYVQEGKNDARTRDVLEKAANENVRVHFADADRLNAIS- 64 Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDSDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|330003381|ref|ZP_08304596.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. MS 92-3] gi|328536991|gb|EGF63283.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. MS 92-3] Length = 255 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 14 SEMIYGIHAVQALLERAPERFQEVYILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 73 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P L A + L++LD V DPHN+GA LRSA A Sbjct: 74 S-EGAVHQGIIARVKPGRQYQENDLPDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAG 132 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 133 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 192 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 193 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 252 Query: 279 HFA 281 + Sbjct: 253 QRS 255 >gi|254700959|ref|ZP_05162787.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis bv. 5 str. 513] gi|261751478|ref|ZP_05995187.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261741231|gb|EEY29157.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513] Length = 297 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 83/255 (32%), Gaps = 4/255 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K ++S K + Q G+ V AL R + A + Sbjct: 35 NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93 Query: 87 L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V V + I I ++ + + + + + LD V D Sbjct: 94 ARTFAKGGLVLEVTEKVISAITRRDNPQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRD 153 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R A A G+I + S ++ G++ +P R S + Sbjct: 154 PGNLGTVIRIADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + N + LI+G E +GL +A + G +L Sbjct: 214 FSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273 Query: 264 NVSNAAAVALYITQN 278 N++ A V LY + Sbjct: 274 NLAIATGVMLYEIRR 288 >gi|152973051|ref|YP_001338197.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238892665|ref|YP_002917399.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|150957900|gb|ABR79930.1| Gm2251 methyltransferase of 23S rRNA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238544981|dbj|BAH61332.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 243 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVYILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P L A + L++LD V DPHN+GA LRSA A Sbjct: 62 S-EGAVHQGIIARVKPGRQYQENDLPDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|23501061|ref|NP_697188.1| RNA methyltransferase [Brucella suis 1330] gi|148559270|ref|YP_001258183.1| RNA methyltransferase [Brucella ovis ATCC 25840] gi|161618138|ref|YP_001592025.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365] gi|163842420|ref|YP_001626824.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445] gi|254705329|ref|ZP_05167157.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis bv. 3 str. 686] gi|256368614|ref|YP_003106120.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915] gi|260567212|ref|ZP_05837682.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261756040|ref|ZP_05999749.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686] gi|294851549|ref|ZP_06792222.1| TrmH family RNA methyltransferase [Brucella sp. NVSL 07-0026] gi|23346928|gb|AAN29103.1| RNA methyltransferase, TrmH family [Brucella suis 1330] gi|148370527|gb|ABQ60506.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840] gi|161334949|gb|ABX61254.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365] gi|163673143|gb|ABY37254.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445] gi|255998772|gb|ACU47171.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915] gi|260156730|gb|EEW91810.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261745793|gb|EEY33719.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686] gi|294820138|gb|EFG37137.1| TrmH family RNA methyltransferase [Brucella sp. NVSL 07-0026] Length = 297 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 84/255 (32%), Gaps = 4/255 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K ++S K + Q G+ V AL R + A + Sbjct: 35 NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93 Query: 87 L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V V + I I ++ + + + + + LD V D Sbjct: 94 ARTFAKGGLVLEVTEKVISAITRRDNPQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRD 153 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A A G+I + S ++ G++ +P R S + Sbjct: 154 PGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + N + LI+G E +GL +A + G +L Sbjct: 214 FSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273 Query: 264 NVSNAAAVALYITQN 278 N++ A V LY + Sbjct: 274 NLAIATGVMLYEIRR 288 >gi|83312248|ref|YP_422512.1| rRNA methylase [Magnetospirillum magneticum AMB-1] gi|82947089|dbj|BAE51953.1| rRNA methylase [Magnetospirillum magneticum AMB-1] Length = 267 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 104/270 (38%), Positives = 153/270 (56%), Gaps = 11/270 (4%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 +K + H K Q +++LYG+H V AAL NP R+ +L+AT Sbjct: 1 MKKTEERNRPHGHGKGKPPQHPRGSGGGGGGGSSIWLYGIHAVCAALANPDRRARRLVAT 60 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ- 133 A L PV+T+ ID+++ +VHQG+AL PL + T++ V Sbjct: 61 VEAAKSLP-----ATKVPVETMERSEIDRLLAPGSVHQGVALLVEPLPATTIEDVIRMAD 115 Query: 134 -----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L++VLD V DPHN+GAILRSA AF ++ R++P E+ LAKSASGALE +P Sbjct: 116 GAPSALVLVLDQVTDPHNVGAILRSAAAFGALAVVAPDRHTPDETGTLAKSASGALERMP 175 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +R++N+ L+ + GF T GL++D+ K L + + K+ L+LGAEG+G+R T+E Sbjct: 176 LVRVTNVVRTLEDLKKAGFWTAGLAADAPKTLAEANLSGKVVLVLGAEGEGMRRLTREHC 235 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L M G +++LNVSNAAAVALY + Sbjct: 236 DHLVRLPMCGEMESLNVSNAAAVALYEMRR 265 >gi|295094033|emb|CBK83124.1| rRNA methylase, putative, group 3 [Coprococcus sp. ART55/1] Length = 260 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 107/258 (41%), Gaps = 11/258 (4%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPH 89 + + F + S E + G + V A + K++ L ++ + Sbjct: 2 QNREFENNIKTESDEEAFVIEGRNAVLEAFRSGKTIDKLYVLDGCRDGIVNSIVREAKKQ 61 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVN 142 + + + ++++ + HQG+ A ++ + +LD + Sbjct: 62 DTVINYLSKEKLNQMS-QAGKHQGVIAHAAAYKYAEIEDMFALAESRGEDPFFFILDEIE 120 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DPHN+GAI+R+A G+I KR + +A + K+++GA+ + P +++N++ ++++ Sbjct: 121 DPHNLGAIIRTANLCGAHGVIIPKRRAVGITATVVKASAGAINYTPVAKVTNISKTIEEL 180 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G D + + + L++G EG G+ +E + + M G I + Sbjct: 181 KDRGMWFACADMDGELMYKCN-LTGSLGLVIGNEGSGVSRLVKEKCDYVVSVPMKGDIDS 239 Query: 263 LNVSNAAAVALYITQNHF 280 LN S AA V Y Sbjct: 240 LNASVAAGVLAYEVVRQR 257 >gi|218768017|ref|YP_002342529.1| putative RNA methylase [Neisseria meningitidis Z2491] gi|52783328|sp|Q9JUU8|RLMB_NEIMA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|121052025|emb|CAM08334.1| putative RNA methylase [Neisseria meningitidis Z2491] Length = 250 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 111/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K ASGA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|77361394|ref|YP_340969.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas haloplanktis TAC125] gi|76876305|emb|CAI87527.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas haloplanktis TAC125] Length = 247 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKI 104 N ++G H+V A L + + ++ A K + D L V+ + + +D Sbjct: 3 NELIFGFHSVEAILASEPERFVEIYALKGRDDKRSTPIIDEALKFGISVQYMQRKALDSK 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 E HQG+ + ++ L+VLD + DPHN+GA LRSA A Sbjct: 63 SKGE-QHQGIIANVKAAPTFNEKDLDAIIAREDTPFLLVLDGITDPHNLGACLRSADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + K A GA E +P I+++NL L+++ G +G + ++ Sbjct: 122 VHAVIVPKDRSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGETDN 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +A+++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 HVFDASLTGPMAIVMGAEGEGMRRLTREHCDLLVKIPMAGTVSSLNVSVATGICLFEVLR 241 Query: 279 HFA 281 + Sbjct: 242 QRS 244 >gi|260663516|ref|ZP_05864406.1| rRNA methylase [Lactobacillus fermentum 28-3-CHN] gi|260552057|gb|EEX25110.1| rRNA methylase [Lactobacillus fermentum 28-3-CHN] Length = 259 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 95/251 (37%), Gaps = 6/251 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K+ + + + Q L G H V+ AL R + +L+ TK LA Sbjct: 10 NARVKEWKKLQTR-KGRKQQGRYLLEGWHLVNEALQAD-RGLHELIGTKEELAAHPDIVA 67 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 V +V P + + + + P L + + L + D V +P N Sbjct: 68 RFK--EVYSVTPAIMAAVTETVTPQGIMVVADLPDLHQVATDLSGAWLFL--DRVQNPGN 123 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G ++R+A A G++ + S + +S G+ H+ + Sbjct: 124 VGTMVRTADAAGFAGVVAGDGSADLFSPKVVRSMQGSQFHLALYEGDLKKWFEDVKQAGY 183 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + K AL++G EG+G+ + + T+ ++ M G ++LNV+ Sbjct: 184 PVYGTQLNPAAKDFRIVTPQGGFALVMGNEGRGMSEELLKQTTANLYIPMRGQAESLNVA 243 Query: 267 NAAAVALYITQ 277 +A + ++ Sbjct: 244 VSAGILMFELA 254 >gi|262045387|ref|ZP_06018411.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037305|gb|EEW38552.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 243 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVYILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L++LD V DPHN+GA LRSA A Sbjct: 62 SEGVVHQGIIARVKPGRQYQENDLPDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|254690454|ref|ZP_05153708.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 6 str. 870] gi|254694943|ref|ZP_05156771.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 3 str. Tulya] gi|256258710|ref|ZP_05464246.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 9 str. C68] gi|260756006|ref|ZP_05868354.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260885026|ref|ZP_05896640.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|261215282|ref|ZP_05929563.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|297247542|ref|ZP_06931260.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str. B3196] gi|260676114|gb|EEX62935.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260874554|gb|EEX81623.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|260916889|gb|EEX83750.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|297174711|gb|EFH34058.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str. B3196] Length = 297 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 84/255 (32%), Gaps = 4/255 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K ++S K + Q G+ V AL R + A + Sbjct: 35 NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93 Query: 87 L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V V + I I ++ + + + + + LD V D Sbjct: 94 ARTFAKGGLVLEVTEKVISAITRRDNPQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRD 153 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A A G+I + S ++ G++ +P R S + Sbjct: 154 PGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + N I LI+G E +GL +A + G +L Sbjct: 214 FSGLVVGTHLKGAVDYRTIPYANKPIILIMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273 Query: 264 NVSNAAAVALYITQN 278 N++ A V LY + Sbjct: 274 NLAIATGVMLYEIRR 288 >gi|255531956|ref|YP_003092328.1| TrmH family RNA methyltransferase [Pedobacter heparinus DSM 2366] gi|255344940|gb|ACU04266.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter heparinus DSM 2366] Length = 254 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 102/252 (40%), Gaps = 9/252 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-------- 88 N + + N F++G+ V A+ I + + + + Sbjct: 3 NSRRPARGKESNEFIFGIRAVIEAIKAGKE-IESIYIQRGLTGGIIMELKALLKEVDAPV 61 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 H PV+ + T+ G AV + + + P + + L+++LD + D N+G Sbjct: 62 HNVPVEKLNRMTLKNHQGVIAVISAITFQKIEDIIPAIYEKGETPLVLILDGITDVRNMG 121 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI R+A I+ + S +A K+++GAL IP R NL + G Q Sbjct: 122 AIARTAACAGVHAIVVPSKNSAQINADAIKTSAGALFTIPVCRHPNLHKTALFLQECGLQ 181 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + + + + A+++GAE +G+ + A +A + M G I +LNVS + Sbjct: 182 IVACTEKTNDLIYVPDYTAPTAIVMGAEDEGISNELMRMANHLAKIPMIGEISSLNVSVS 241 Query: 269 AAVALYITQNHF 280 A + LY Sbjct: 242 AGIILYEAIRQR 253 >gi|225851684|ref|YP_002731917.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457] gi|256112654|ref|ZP_05453575.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis bv. 3 str. Ether] gi|256264805|ref|ZP_05467337.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|265994095|ref|ZP_06106652.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|225640049|gb|ACN99962.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis ATCC 23457] gi|262765076|gb|EEZ10997.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263095215|gb|EEZ18884.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|326408171|gb|ADZ65236.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M28] gi|326537884|gb|ADZ86099.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis M5-90] Length = 297 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 85/255 (33%), Gaps = 4/255 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K ++S K + Q G+ V AL R + A + Sbjct: 35 NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93 Query: 87 L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V V + I I ++ + + + + + LD V D Sbjct: 94 ARTFAKGGLVLEVTEKVISAITRRDNPQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRD 153 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GA++R+A A G+I + S ++ G++ +P R S + Sbjct: 154 PGNLGAVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + N + LI+G E +GL +A + G +L Sbjct: 214 FSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273 Query: 264 NVSNAAAVALYITQN 278 N++ A V LY + Sbjct: 274 NLAIATGVMLYEIRR 288 >gi|187776946|ref|ZP_02993419.1| hypothetical protein CLOSPO_00490 [Clostridium sporogenes ATCC 15579] gi|187775605|gb|EDU39407.1| hypothetical protein CLOSPO_00490 [Clostridium sporogenes ATCC 15579] Length = 259 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 109/262 (41%), Gaps = 9/262 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ K+++ +K ++ +Q ++ + G AL + S + ++ + +L +L+ Sbjct: 4 SKDNQLIKEVRKLREK-KYRTQNKSFIVEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEK 61 Query: 84 ---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 N+ + V + I E QG+ + LD +L+ D Sbjct: 62 LYKKYNINNDIETYVVNYSVLKSISNTE-NPQGIVSVINYFKTEKLDLENGFYILV--DK 118 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A GIITTK + +S G++ +IP I NL Sbjct: 119 VQDPGNMGTIIRTAHAAGALGIITTKGTVDVYNEKTLRSTMGSIFYIPIIEDENLETVKS 178 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + + + +K D + + +G EG G+ + + MPG Sbjct: 179 LQRNGFKLLVSSLDTNSNFYDVNMK-DNMIIAVGNEGNGISEDLNSLSDIKVKIPMPGAA 237 Query: 261 KALNVSNAAAVALYITQNHFAK 282 ++LNV+ A ++ + K Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259 >gi|86605783|ref|YP_474546.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab] gi|86554325|gb|ABC99283.1| RNA methyltransferase, TrmH family [Synechococcus sp. JA-3-3Ab] Length = 270 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 99/257 (38%), Gaps = 4/257 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + ++++ + +S+ + + G H + AL A Sbjct: 8 SPKNPWIRQLRQLH-RSKGRREQGAFLVEGSHLLEEALGVGWPLRAVCYTFDWAERHPRL 66 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 A+LP + V + + + E+ +A+ + ++ +L +V++ + D Sbjct: 67 LASLPKHLRRQAVSLEVMAALSTTESPEGVVAVAVSRQIASP--PPEALRLGLVVETLQD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G+++R A DG+ + E+ + ++++G P +S+L +Q Sbjct: 125 PGNLGSLIRVVAATGADGLWLSADSVDPENPKVLRASAGQWFRRPPQVLSDLPAWIQSCR 184 Query: 204 SWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G Q + + + +LG EG GL+ T + A + + M +++ Sbjct: 185 RQGIQVLAATLAPLATCYWDHDLTRPTLFLLGNEGAGLQESTIQLADAQVRIPMAAGVES 244 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ + LY Sbjct: 245 LNVAMTGGLLLYEALRQ 261 >gi|258645874|ref|ZP_05733343.1| RNA methyltransferase, TrmH family, group 3 [Dialister invisus DSM 15470] gi|260403247|gb|EEW96794.1| RNA methyltransferase, TrmH family, group 3 [Dialister invisus DSM 15470] Length = 282 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 113/284 (39%), Gaps = 14/284 (4%) Query: 9 SEKIFSLKDSHYA-----KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 + + SL K R + + + F+ + E F+ G ++V +L Sbjct: 2 NNRRVSLDKKERKCDPHEKRRSGDQSIRGERGFS-SGGRRKEEETCFIGGRNSVLESLRA 60 Query: 64 PS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 +K+F K+ + +T+D++ + HQG+A P Sbjct: 61 GQVKKVFIKSGKKDGRLLALAEEAERLGVAAIETEERTLDRLT-EGVRHQGVAASLKPYA 119 Query: 123 SPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 L+ R LL++LD V D NIGAI+R+A ++ K S +A Sbjct: 120 YADLEEVLSSCERKDPLLILLDGVEDVRNIGAIVRTAECAGAAAVLLPKHRSSPVTAAAM 179 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+ASGA ++P +I N+ + + L Q + +++GAEG Sbjct: 180 KTASGAFAYLPVCQIGNI-RQTLEKLKERGFWAVGADMDGGDLYQADLKGPLVIVMGAEG 238 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 KG+ P T+ + M G + +LNVS AAA+ +Y Sbjct: 239 KGISPLTKRMCDFCVRIPMRGKVSSLNVSVAAALLMYEAVRQRN 282 >gi|240849692|ref|YP_002971080.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup] gi|240266815|gb|ACS50403.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup] Length = 289 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 101/275 (36%), Gaps = 11/275 (4%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 K+ ++ + ++ K +++ +QK ++ ++ G+ V AL+ Sbjct: 9 PKTGRVKEITSL-------SNPIIKDLKALSQK-KNRNREGLFMAEGLKLVIDALDLGWT 60 Query: 67 KIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 + + NA + + V + ++ + ++ + + Sbjct: 61 IQTLIFSKSKIGNAAIENTAARAVANGGFVIKASQKVMESLTRRDNPQTVIGIFKQKWHP 120 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + + + + LD V DP N+G I+R+A A G+I + S ++ G+ Sbjct: 121 FEMIKGQIKDVYIALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSTETVRATMGS 180 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + +P R+ H G S + KN I L++G E +GL Sbjct: 181 IFSVPLYRLDESAFLNWSAHFKGMIVGTHLKGSLDYRTLDFKNGPIILLMGNEKQGLSDL 240 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +A + G +LN++ A AV LY + Sbjct: 241 LTNRCDKLARIPQSGRADSLNLAVATAVMLYEIRR 275 >gi|227515640|ref|ZP_03945689.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931] gi|227086070|gb|EEI21382.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931] Length = 268 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 95/251 (37%), Gaps = 6/251 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K+ + + + Q L G H V+ AL R + +L+ TK LA Sbjct: 19 NARVKEWKKLQTR-KGRKQQGRYLLEGWHLVNEALQAD-RGLHELIGTKEELAAHPDIVA 76 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 V +V P + + + + P L + + L + D V DP N Sbjct: 77 RFK--EVYSVTPAIMAAVTETVTPQGIMVVADLPDLHQVATDLSGAWLFL--DRVQDPGN 132 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G ++R+A A G++ + S + +S G+ H+ + Sbjct: 133 VGTMVRTADAAGFAGVVAGDGSADLFSPKVVRSMQGSQFHLALYEGDLKKWFEDVKQAGY 192 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + K AL++G EG+G+ + + T+ ++ M G ++LNV+ Sbjct: 193 PVYGTQLNPAAKDFRIVTPQGGFALVMGNEGRGMSEELLKQTTANLYIPMRGQAESLNVA 252 Query: 267 NAAAVALYITQ 277 +A + ++ Sbjct: 253 VSAGILMFELA 263 >gi|254470423|ref|ZP_05083827.1| RNA methyltransferase, TrmH family, group 3 [Pseudovibrio sp. JE062] gi|211960734|gb|EEA95930.1| RNA methyltransferase, TrmH family, group 3 [Pseudovibrio sp. JE062] Length = 289 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 109/269 (40%), Positives = 168/269 (62%), Gaps = 6/269 (2%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68 +++ + K + K Q + ++ ++YG+HT+ AA NP RK Sbjct: 21 NDRPYKKKRPDGKSSGGSFSKGKPWQK-----KSAAEDGPFYIYGLHTIEAAFKNPERKR 75 Query: 69 FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 +L+ T+NAL RL + NL PV+ P+ IDK+VGK+AVHQG AL L + Sbjct: 76 HKLVVTQNALRRL-EERNLKIDVPVEDASPRDIDKLVGKDAVHQGAALLVDALPEYGPEE 134 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +++ QL++ LD V DPHN+GAILRSAVA + D ++TT+R++P E VLAK+ASGAL+ I Sbjct: 135 LKDGQLVLALDQVTDPHNVGAILRSAVALNADAVVTTRRHAPEEGPVLAKTASGALDMIK 194 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++RI N++ +++M G+Q I L S+ + +E DK L+LG+EGKG+R +++ Sbjct: 195 HVRIQNMSRFVEEMRDKGYQAIALDSEGPEAVENTAFTDKTLLVLGSEGKGVREGVRKSC 254 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++A L MPG IK+LNVSNAA ++LY+ + Sbjct: 255 DTLARLDMPGEIKSLNVSNAAILSLYVAR 283 >gi|184155768|ref|YP_001844108.1| rRNA methylase [Lactobacillus fermentum IFO 3956] gi|183227112|dbj|BAG27628.1| rRNA methylase [Lactobacillus fermentum IFO 3956] Length = 259 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 95/251 (37%), Gaps = 6/251 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K+ + + + Q L G H V+ AL R + +L+ TK LA Sbjct: 10 NARVKEWKKLQTR-KGRKQQGRYLLEGWHLVNEALQAD-RGLHELIGTKEELAAHPDIVA 67 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 V +V P + + + + P L + + L + D V DP N Sbjct: 68 RFK--EVYSVTPAIMAAVTETVTPQGIMVVADLPDLHQVATDLSGAWLFL--DRVQDPGN 123 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G ++R+A A G++ + S + +S G+ H+ + Sbjct: 124 VGTMVRTADAAGFAGVVAGDGSADLFSPKVVRSMQGSQFHLALYEGDLKKWFEDVKQAGY 183 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + K AL++G EG+G+ + + T+ ++ M G ++LNV+ Sbjct: 184 PVYGTQLNPAAKDFRIVTPQGGFALVMGNEGRGMSEELLKQTTANLYIPMRGQAESLNVA 243 Query: 267 NAAAVALYITQ 277 +A + ++ Sbjct: 244 VSAGILMFELA 254 >gi|304436602|ref|ZP_07396571.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370298|gb|EFM23954.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 272 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 67/259 (25%), Positives = 116/259 (44%), Gaps = 11/259 (4%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLP 88 K + + + + L G H + A+ R I ++L N D Sbjct: 9 KEKHAQRNAVPQEEKAPPILAGRHAIIEAIKAG-RGINRILLADNVRGGGVNELRDLARE 67 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHV 141 H V TV +D +V ++ HQG AP+ ++ LL++LD + Sbjct: 68 HGITVDTVGRSKLDALVSQDVRHQGAVAYVAPVAYAAVEEIIAGARARGEDPLLLLLDGI 127 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+GA+LR+A A GI+ +R+S + +A+ ++GALE++P RI N+ ++ Sbjct: 128 EDPQNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQTMRA 187 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + GF G ++ + + L++G+EG+G+ T++ L M G I Sbjct: 188 LKEQGFWIAGADMSGEETYDHANLTGALVLVIGSEGRGMSRLTRDLCDFTVRLPMVGKIN 247 Query: 262 ALNVSNAAAVALYITQNHF 280 +LN S A A+ +Y Q Sbjct: 248 SLNASVAGAILMYEAQRQR 266 >gi|256060292|ref|ZP_05450465.1| tRNA/rRNA methyltransferase (SpoU) [Brucella neotomae 5K33] gi|261324264|ref|ZP_05963461.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33] gi|261300244|gb|EEY03741.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33] Length = 297 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 84/255 (32%), Gaps = 4/255 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K ++S K + Q G+ V AL R + A + Sbjct: 35 NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93 Query: 87 ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V V + I I ++ + + + + + LD V D Sbjct: 94 TRTFAKGGLVLEVTEKVISAITRRDNPQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRD 153 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A A G+I + S ++ G++ +P R S + Sbjct: 154 PGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + N + LI+G E +GL +A + G +L Sbjct: 214 FSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273 Query: 264 NVSNAAAVALYITQN 278 N++ A V LY + Sbjct: 274 NLAIATGVMLYEIRR 288 >gi|227357121|ref|ZP_03841490.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC 29906] gi|227162653|gb|EEI47620.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC 29906] Length = 247 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 99/242 (40%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 +YG+H V A L ++ K R A V+ Q +D Sbjct: 3 EDIIYGIHAVKALLERDPTHFKEVYVLKGREDRRLMPVIHALEEQGILVQVANRQWLDNQ 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L+VLD V DPHN+GA LRSA A Sbjct: 63 TEGAVHQGIIAKVKPSRQYQEQDLPDLLAEVGTPFLLVLDGVTDPHNLGACLRSADAAGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E +P IR++NL L+ + +G + ++ Sbjct: 123 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRLLQEENIWIVGTAGEADHT 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 183 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAMRQ 242 Query: 280 FA 281 Sbjct: 243 RI 244 >gi|15676825|ref|NP_273970.1| RNA methyltransferase [Neisseria meningitidis MC58] gi|52783329|sp|Q9JZR3|RLMB_NEIMB RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|7226169|gb|AAF41338.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58] gi|319410266|emb|CBY90607.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Neisseria meningitidis WUE 2594] gi|325200383|gb|ADY95838.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis H44/76] Length = 250 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG + L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|238926114|ref|ZP_04657874.1| tRNA/rRNA methyltransferase [Selenomonas flueggei ATCC 43531] gi|238886004|gb|EEQ49642.1| tRNA/rRNA methyltransferase [Selenomonas flueggei ATCC 43531] Length = 272 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 L G H + A+ +I + + D H V TV +D +V + Sbjct: 27 ILAGRHAIIEAIKAGRGINRILLADGVRGSGVNELRDLAREHGIMVDTVGRSKLDALVSQ 86 Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG AP+ ++ LL++LD + DP N+GA+LR+A A Sbjct: 87 DVRHQGAVAYVAPVAYVAVEEVIAGARARGEDPLLLLLDGIEDPQNLGALLRTADAAGVH 146 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ +R+S + +A+ ++GALE++P RI N+ ++ + GF G ++ Sbjct: 147 GILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQTIRALKEQGFWIAGADMGGEEIY 206 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + L++G+EG+G+ T++ L M G I +LN S A A+ +Y Q Sbjct: 207 DRANLTGALVLVIGSEGRGMSRLTRDLCDFTVRLPMMGKINSLNASVAGAILMYEAQRQR 266 >gi|261363630|ref|ZP_05976513.1| RNA methyltransferase, TrmH family, group 3 [Neisseria mucosa ATCC 25996] gi|288568160|gb|EFC89720.1| RNA methyltransferase, TrmH family, group 3 [Neisseria mucosa ATCC 25996] Length = 249 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L + +A R + V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSITELYIQEGKNDARTRDVLEKAANENVRVHFADADRLNAIS- 64 Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|304396947|ref|ZP_07378827.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. aB] gi|304355743|gb|EFM20110.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. aB] Length = 244 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + ++G+H V A L ++ ++ K R A ++ + +D Sbjct: 2 SEIIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPVVAALEAQGIVIQLAERKWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ P L + L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGGVHQGIVARVKPGRQYQEGDLPDLLQSLDKPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S +A K ASGA E++P IR++NL L+ + + +G + ++ Sbjct: 121 VHAIIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TVFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 Sbjct: 241 QRN 243 >gi|146296777|ref|YP_001180548.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410353|gb|ABP67357.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 271 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 65/284 (22%), Positives = 117/284 (41%), Gaps = 28/284 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 LI K++E + LK H +H + + + GV V AL Sbjct: 8 ELIKSKENECVKRLKKLHDK-------------------KHREEFKVFLVEGVKAVKEAL 48 Query: 62 NNPSRKIFQLLATKNALARLDW-------DANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 + I L+ ++ A + + N + VP + + I L Sbjct: 49 DYAIEDINLLIFSQEASKKYEEFFSRCISLLNSGKLKRIVQVPEKIFEHISTTTTPQGVL 108 Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 A + LD ++ ++V+D V DP N+G I+R A AF + +IT + Sbjct: 109 AECSFFDK--ELDVLKKHNRVVVIDSVQDPGNLGTIIRCADAFGFECVITVNGTVDVYNP 166 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + +SA G++ H+ +R + L+ ++ GF + + + +D+ A+++G Sbjct: 167 KVVRSAMGSMFHVDVVRERKKEEVLEALNKRGFALYVTTPYGDVDISKLSVDDRFAIVIG 226 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 E KG+ E AT + MPG ++LN + AAA+ LY + Sbjct: 227 NESKGVDVAFLENATKKVKISMPGKAESLNSAVAAAIVLYELRK 270 >gi|255526051|ref|ZP_05392974.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7] gi|255510237|gb|EET86554.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7] Length = 260 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 109/281 (38%), Gaps = 26/281 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + +K K H ++ + G V A Sbjct: 1 MEIITSKDNSLVKEIKKLKEKK-------------------HRTKNNQFLIEGFRFVEEA 41 Query: 61 LNNPSRK--IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + + IF + K+ D + L + V Q + + E A+ Sbjct: 42 LKSEFQVPMIFVSESHKSRFQSFDIKSKLQKSTKIYWVSEQVLKLLSDTETPQGITAVV- 100 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + L+ +++D V DP N+G I+R+A A G+I TK + + Sbjct: 101 ---DNKELNVENKEGFYVLVDKVQDPGNMGTIIRTAHASKALGVIITKGTVDIYNEKTLR 157 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 S G++ H+P I+ ++L + + + GF + S ++ K K + +G EG Sbjct: 158 STMGSIFHVPVIQDNDL-NKVNFLKEKGFNLVASSLNTDKNFYDVDLKGKKIIAVGNEGS 216 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 G+ + A + MPG ++LNVS AA V ++ Sbjct: 217 GISDEIYNMADIKVKIPMPGGAESLNVSVAAGVMMFEVIRQ 257 >gi|298368373|ref|ZP_06979691.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sp. oral taxon 014 str. F0314] gi|298282376|gb|EFI23863.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sp. oral taxon 014 str. F0314] Length = 249 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L + +A R + V ++ I Sbjct: 6 LIYGFHAVNARLWQNPKSITELYIQEGKNDARTRDVLEKAANENVRVHFADADRLNAIS- 64 Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|224475680|ref|YP_002633286.1| putative rRNA methyltransferase [Staphylococcus carnosus subsp. carnosus TM300] gi|222420287|emb|CAL27101.1| putative rRNA methyltransferase [Staphylococcus carnosus subsp. carnosus TM300] Length = 249 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 116/240 (48%), Gaps = 11/240 (4%) Query: 50 FLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G H V A+ +P KI K V+TVP +D + Sbjct: 7 VIVGRHAVKEAITTGHPINKILIQDGVKKQQLEEILKHAKNQKIVVQTVPKSKLDHLA-- 64 Query: 108 EAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 EA HQG+A AP LD L++LD + DPHN+G+ILR+A A D Sbjct: 65 EAPHQGVAALVAPYEYADLDKLLAQLKDKDGLPTLVILDGLEDPHNLGSILRTADAAGVD 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I KR S + + +AK+++GA++H+P +R++NL+ + ++ G+ G ++D+ Sbjct: 125 GVIIPKRRSVALTQTVAKASAGAIQHVPVVRVTNLSQTMDQLKDEGYWIAGTAADNATDY 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q + +A+++G EG G+ +E + M G I +LN S AA++ +Y Sbjct: 185 RQMAADMPLAIVIGNEGHGMSRLVKEKCDFYIKIPMVGHINSLNASVAASLMMYEIYRKR 244 >gi|82779438|ref|YP_405787.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella dysenteriae Sd197] gi|81243586|gb|ABB64296.1| conserved hypothetical protein [Shigella dysenteriae Sd197] Length = 243 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L++LD V DPHN+GA LRSA A Sbjct: 62 SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LCQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|56961913|ref|YP_173635.1| tRNA/rRNA methyltransferase [Bacillus clausii KSM-K16] gi|56908147|dbj|BAD62674.1| tRNA/rRNA methyltransferase [Bacillus clausii KSM-K16] Length = 263 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 67/268 (25%), Positives = 126/268 (47%), Gaps = 19/268 (7%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALAR 80 +R + KK + + + F+ G + V A+ + I ++ ++ Sbjct: 3 KRTNPQPKKQMKGDNR-------QEEFIVGKNPVIEAIKSGH-PIHKIWIGDQSQKGQMT 54 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------Q 133 V+T P + +D++VG + HQG+ A +DA+ Sbjct: 55 KLTQLAKEQNVLVQTAPKRKLDQLVGH-SNHQGVVASVAAYEYADMDALFAKAAAAHEAP 113 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +VLD + DPHN+G+I+R+A A GII KR S + +AK+++GA+E+IP +R++ Sbjct: 114 FFLVLDEIEDPHNLGSIMRTADAVGAHGIIIPKRRSVGLTQTVAKASTGAIEYIPVVRVT 173 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL + ++ G G + ++ + N + L++G+EGKG+ +E + Sbjct: 174 NLARTMDELKKQGLWFAGTDAAAEGDYREADYNLPLCLVIGSEGKGISRLIKEKCDFLVS 233 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G + +LN S AA++ +Y + A Sbjct: 234 IPMKGRVTSLNASVAASLLMYEVFHKRA 261 >gi|110636002|ref|YP_676210.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1] gi|110286986|gb|ABG65045.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1] Length = 286 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 89/257 (34%), Gaps = 6/257 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K +++ K + + G+ V AL++ I L+ K + Sbjct: 21 SNPLVKDIKALTLK-KFRDRERAFMAEGLKLVLDALDSGW-AIRTLIYAKAGRGNAAVEK 78 Query: 86 NLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 V V + + I ++ + + L + L + LD V Sbjct: 79 AAARTVAAGGLVLEVSEKVLSAITRRDNPQMVVGVFEQRWLPLKEVTPKGEDLWVALDRV 138 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+ A G+I + S ++ G++ +P R + Sbjct: 139 RDPGNLGTIIRTVDAVGARGVILVGECTDPFSVETVRATMGSVFSVPLARADEAAFLAWR 198 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 H G S + + L++G E +GL K E + + G Sbjct: 199 EHFAGLMVGTHLKGSVDYRNVDYSGGPVLLLMGNEQQGLPDKLAEACDRLVRIPQAGRAD 258 Query: 262 ALNVSNAAAVALYITQN 278 +LN++ A V LY + Sbjct: 259 SLNLAVATGVMLYEIRR 275 >gi|225873641|ref|YP_002755100.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium capsulatum ATCC 51196] gi|225791622|gb|ACO31712.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium capsulatum ATCC 51196] Length = 270 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 106/246 (43%), Gaps = 14/246 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-------LDWDANLPHPFPVKTVPPQT 100 LYG+H V AL SRK + ++ D ++ + Sbjct: 1 MDVLYGLHPVEEALRAGSRKFDHVCVSRERQDHGAAQKLQRIVDLCRSEGVRLRFENREQ 60 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSA 154 + ++ A HQG+ T++ + LL+ LD V DP N+GA+LRSA Sbjct: 61 LTRMAKTHA-HQGVVAVVRERSFLTIEDLMAAPADGHPHLLLALDGVEDPQNLGALLRSA 119 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 DG++ +R S SAV K+++GA EHI R+ NL AL+++ +GL Sbjct: 120 DGAGVDGVLLPERRSAPLSAVAVKTSAGAAEHIRIARVVNLVRALEQLKEQNIWCVGLDE 179 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++LG EG+GL ++T + + M G + +LNVS A AV LY Sbjct: 180 RGTMSYDAYDWTTPSVVVLGREGEGLHDLVRKTCDHLVRIPMAGGVSSLNVSAAGAVVLY 239 Query: 275 ITQNHF 280 Sbjct: 240 EAARQR 245 >gi|239998822|ref|ZP_04718746.1| RNA methylase [Neisseria gonorrhoeae 35/02] gi|240014263|ref|ZP_04721176.1| RNA methylase [Neisseria gonorrhoeae DGI18] gi|240016699|ref|ZP_04723239.1| RNA methylase [Neisseria gonorrhoeae FA6140] gi|240121826|ref|ZP_04734788.1| RNA methylase [Neisseria gonorrhoeae PID24-1] gi|240125597|ref|ZP_04738483.1| RNA methylase [Neisseria gonorrhoeae SK-92-679] gi|268594665|ref|ZP_06128832.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae 35/02] gi|268684185|ref|ZP_06151047.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae SK-92-679] gi|268548054|gb|EEZ43472.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae 35/02] gi|268624469|gb|EEZ56869.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae SK-92-679] Length = 250 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDIGGNADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|164686508|ref|ZP_02210536.1| hypothetical protein CLOBAR_00073 [Clostridium bartlettii DSM 16795] gi|164604519|gb|EDQ97984.1| hypothetical protein CLOBAR_00073 [Clostridium bartlettii DSM 16795] Length = 248 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 109/242 (45%), Gaps = 13/242 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + + AL + R I +L+ + K + ++ V +D+I Sbjct: 8 IEGRNPIIEALRSD-RPIDKLMISNTSKEGSIKKIIGMAKEKNVVIQYVDKHKLDEISTS 66 Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+ + L+ ++LD + DPHN+G I+R+A A Sbjct: 67 HS-HQGVIAVVSDYKYYELEDLLAIARERGEDPFFIILDEITDPHNLGTIIRTADAVGAH 125 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I KR S ++V+AK+++GA+E++P +++N+ + ++++ G Sbjct: 126 GVIIPKRRSVHITSVVAKASAGAVEYVPVCKVTNIANTIKQLKKEGLWIAAA-DMDGGVF 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ +AL++G+EG G+ ++ + + M G + +LN S A + LY Sbjct: 185 YEQDLTGPLALVIGSEGFGVSRLVKQNCDFVVKMPMIGNVSSLNASVAGGILLYEIFRQR 244 Query: 281 AK 282 K Sbjct: 245 MK 246 >gi|164687655|ref|ZP_02211683.1| hypothetical protein CLOBAR_01297 [Clostridium bartlettii DSM 16795] gi|164603429|gb|EDQ96894.1| hypothetical protein CLOBAR_01297 [Clostridium bartlettii DSM 16795] Length = 265 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 112/282 (39%), Gaps = 23/282 (8%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 N+I K ++KI K K++ ++ + + G ++ AL Sbjct: 3 NIIKSKDNDKIKYTKSL-------------------LKTKGRNKEKKFIIEGYRILTLAL 43 Query: 62 NNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 ++ + + K ++ + + + ++V E LA+ Sbjct: 44 ECDAKLEYVFINEDFEKKQDHKVLLEELENKNIKIYKTSNKIFSEMVDTENTQGILAVLR 103 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + ++ + +++LD + DP N+G I+R+A + D II K + + + Sbjct: 104 YKERDLVNNINQDDKFVLILDRIQDPGNMGTIIRTADSAGVDAIILLKGCVDIYNPKVIR 163 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 S G++ I + +A+ + + F + ++ + + KIAL++G E Sbjct: 164 STMGSIF-DMNIIQTTQDEAVDFLKANNFDIVSSYLHTESYYNETTYDGKIALVIGNEAN 222 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G+ + + + + + G ++LN + +AA+ +Y + + Sbjct: 223 GINDELISKSDKLVKIPIYGNAESLNAAISAAILMYEIKKYL 264 >gi|225626689|ref|ZP_03784728.1| RNA methyltransferase [Brucella ceti str. Cudo] gi|254713278|ref|ZP_05175089.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M644/93/1] gi|254716369|ref|ZP_05178180.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M13/05/1] gi|256158847|ref|ZP_05456704.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M490/95/1] gi|256254228|ref|ZP_05459764.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti B1/94] gi|260169726|ref|ZP_05756537.1| RNA methyltransferase, TrmH family protein [Brucella sp. F5/99] gi|261218151|ref|ZP_05932432.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1] gi|261221377|ref|ZP_05935658.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94] gi|261321001|ref|ZP_05960198.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1] gi|261759264|ref|ZP_06002973.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] gi|265997338|ref|ZP_06109895.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1] gi|225618346|gb|EEH15389.1| RNA methyltransferase [Brucella ceti str. Cudo] gi|260919961|gb|EEX86614.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94] gi|260923240|gb|EEX89808.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1] gi|261293691|gb|EEX97187.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1] gi|261739248|gb|EEY27244.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] gi|262551806|gb|EEZ07796.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1] Length = 297 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 84/255 (32%), Gaps = 4/255 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K ++S K + Q G+ V AL R + A + Sbjct: 35 NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93 Query: 87 L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V V + I I ++ + + + + + LD V D Sbjct: 94 ARTFAKDGLVLEVTEKVISAITRRDNPQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRD 153 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A A G+I + S ++ G++ +P R S + Sbjct: 154 PGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + N + LI+G E +GL +A + G +L Sbjct: 214 FSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273 Query: 264 NVSNAAAVALYITQN 278 N++ A V LY + Sbjct: 274 NLAIATGVMLYEIRR 288 >gi|238797599|ref|ZP_04641096.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia mollaretii ATCC 43969] gi|238718596|gb|EEQ10415.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia mollaretii ATCC 43969] Length = 246 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L+N ++ ++ K R ++ Q +D Sbjct: 2 SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLVAELEAAGLVIQVANRQWLDAQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 V +A D L+VLD V DPHN+GA LRSA A Sbjct: 62 VEGGVHQGIVARVREGRQYQENDLPALLKSVEMPFLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A+ K ASGA E++P I+++NL L+ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|315617593|gb|EFU98199.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 3431] Length = 243 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A H ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESHGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L++LD V DPHN+GA LRSA A Sbjct: 62 SDGGVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 122 HAVIVPKDRSAQLNATARKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|312135023|ref|YP_004002361.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor owensensis OL] gi|311775074|gb|ADQ04561.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor owensensis OL] Length = 270 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 53/284 (18%), Positives = 116/284 (40%), Gaps = 26/284 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 IS +++E I +K H ++ + + + G+ V A+ Sbjct: 7 EFISSRENECIKRVKKLHDK-------------------KYREEFRSFIIEGLKLVKEAI 47 Query: 62 NNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLA 115 + I ++ ++ A R L +K V P + + + + QG+ Sbjct: 48 DYQIECINLVIFSQQAKDRYQEFYWECKRLLEDGKIKRVIEVPDKLFEYIATTSTPQGIL 107 Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 E + ++ ++N + ++V D + DP N+G ++R A AF D ++TTK + Sbjct: 108 AECNFVDK-DINFIKNLKRVVVADKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPK 166 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 ++ G+L H+ +R + ++ + F + + + + + K +++G Sbjct: 167 TIRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKVVPDKKFCVVIGN 226 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E +G+ + A + M G ++LN + AA+V LY + Sbjct: 227 ESEGVSDSFAKVAARKIKIPMAGKAESLNAAVAASVVLYELRKR 270 >gi|239830999|ref|ZP_04679328.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG 3301] gi|239823266|gb|EEQ94834.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG 3301] Length = 293 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 45/255 (17%), Positives = 88/255 (34%), Gaps = 4/255 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K ++S K + Q G+ V AL R + A ++ Sbjct: 29 NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKMVEQVA 87 Query: 87 L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V V + + I ++ + + + + + + LD V D Sbjct: 88 ARTFAKGGLVLEVTEKIMAAITRRDNPQMVVGVFEQQYRPLASLKPKGNDVYIALDRVRD 147 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A A S G+I + S ++ G++ +P ++S + Sbjct: 148 PGNLGTVIRTADAVSAKGVILIGDTTDPYSLETVRATMGSVFSMPLYKVSEADFLNWRKG 207 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + N + L++G E +GL +A + G +L Sbjct: 208 VSGLVVGTHLKGAVDYRTIPYANKPVVLMMGNEQQGLPDSLAGACDKLARIPQAGRADSL 267 Query: 264 NVSNAAAVALYITQN 278 N++ A V LY + Sbjct: 268 NLAIATGVMLYEIRR 282 >gi|295706828|ref|YP_003599903.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319] gi|294804487|gb|ADF41553.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319] Length = 252 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 104/277 (37%), Gaps = 27/277 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ ++ + K H + + + G H V A Sbjct: 1 MKQIDSVKNPQVKAWKKLH-------------------NKKDRDKQGLFMVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + N + +L+ ++ W+ + + V I + E + Sbjct: 42 IKN-KDCVKELIIRESIEVPAQWNID---GIEITVVNEAIIKLLSDTETPQGII---AVC 94 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + +Q +++LD V DP N+G I+R+A A D II + + + +S Sbjct: 95 FQTKHAEIIHTAQKVLLLDAVQDPGNLGTIIRTADAAGVDAIIVGEGSVDVYNPKVVRST 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GA+ H+P ++ L + K + N+ ALI+G EG G+ Sbjct: 155 QGAIFHLPIVKGDLLEMISLLKERGIAVYGTSLQNGKVYTCVKPSNE-FALIVGNEGNGV 213 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K E ++ + G ++LNV+ A+ + LY + Sbjct: 214 SEKVLEQTDQNLYIPIYGKSESLNVAIASGILLYYLR 250 >gi|238786345|ref|ZP_04630280.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia bercovieri ATCC 43970] gi|238712744|gb|EEQ04821.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia bercovieri ATCC 43970] Length = 246 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104 + +YG+H V A L+N ++ ++ K R ++ Q +D Sbjct: 2 SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVIQVANRQWLDAQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 V +A D L+VLD V DPHN+GA LRSA A Sbjct: 62 VEGGVHQGIVARVREGRQYQENDLPALLKSVEMPFLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A+ K ASGA E++P I+++NL L+ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEAVRQ 241 Query: 280 FA 281 A Sbjct: 242 RA 243 >gi|163846264|ref|YP_001634308.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl] gi|222524019|ref|YP_002568489.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl] gi|163667553|gb|ABY33919.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus J-10-fl] gi|222447898|gb|ACM52164.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl] Length = 261 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 94/255 (36%), Gaps = 6/255 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDW 83 + K +++ Q+ + + + G+ V+ A+ + ++A + ++ A Sbjct: 8 NPTIKALRALRQR-KARDEQGRYLIEGIRPVAEAIQCGAPLDMLVVAPELLNSSFAHELI 66 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 D + TV + K+ QGLA +P + +VL V D Sbjct: 67 DTYAAGGGKILTVSAAVFSSLADKD-NPQGLAAVGRIHYTPLPNLSPAPVGWVVLVEVAD 125 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ILR+A G+I + +++ GAL I ++ D L Sbjct: 126 PGNLGTILRTADGAGFSGVILVGATTDPFDPAAVRASMGALF-SQQIARTSWPDLLTWAR 184 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 +G S + L+LG+E GL + + + M G +L Sbjct: 185 QHRIALVGSSDRGASDYRATTYPRPLLLVLGSERHGLTDEQLAACDLVVRIPMRGRSDSL 244 Query: 264 NVSNAAAVALYITQN 278 N++ AA + +Y Sbjct: 245 NLAVAAGILMYEATR 259 >gi|317164111|gb|ADV07652.1| RNA methylase [Neisseria gonorrhoeae TCDC-NG08107] Length = 255 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 12 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 70 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 71 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 130 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 131 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDIGGNADLYH 190 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 191 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 248 >gi|49474842|ref|YP_032883.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1] gi|49237647|emb|CAF26827.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1] Length = 287 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 100/275 (36%), Gaps = 11/275 (4%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 K+ K+ + ++ K +++ +QK ++ ++ G+ V ALN + Sbjct: 9 PKTGKVKEITSL-------SNPIIKDLKALSQK-KNRNREGLFMAEGLKLVIDALNLGWK 60 Query: 67 KIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 + + + + V + ++ I ++ + + S Sbjct: 61 IQTLIFSKSKISNTAIENTAAHTVANGGLVIKASQKVMESIARRDNPQTVIGIFKQQWQS 120 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + + + + LD V DP N+G I+R+A A G+I + S ++ G+ Sbjct: 121 LEMITGQAEDVYVALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPETVRATMGS 180 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + +P R H G S + KN + L++G E +GL Sbjct: 181 IFSVPLYRFDESAFLNWSTHFKGMIVGTHLKGSIDYRTIDFKNGPVILLMGNEKQGLPDI 240 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +A + G +LN++ A A+ LY + Sbjct: 241 LANCCDKLARIPQSGRADSLNLAVATAIMLYEIRR 275 >gi|320530261|ref|ZP_08031330.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas artemidis F0399] gi|320137476|gb|EFW29389.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas artemidis F0399] Length = 265 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 108/241 (44%), Gaps = 11/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL--ARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 L G H ++ A+ R I ++L R D H V V +D + Sbjct: 19 ILAGRHAITEAIKAG-RGINRILIADGMHGGVRELRDLARAHDITVDIVSRAKLDA-AAE 76 Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A H G+ AP+ ++ LL++LD + DPHN+GA+LR+A A Sbjct: 77 GARHGGMLAYAAPVSYVPVEEIISSVRARGEEPLLLLLDGIEDPHNLGALLRTADAAGVH 136 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ +R+S + +A+ ++GALE++P RI N+ ++ + GF G Sbjct: 137 GILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQTIRALKEDGFWIAGADMAGSDTY 196 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + L++G+EG+G+ T+E L M G I +LN S A A+ +Y Sbjct: 197 DKANLTGALVLVIGSEGRGMSRLTRELCDFTVRLPMRGKINSLNASVAGAILMYEAMRQR 256 Query: 281 A 281 Sbjct: 257 T 257 >gi|320162047|ref|YP_004175272.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1] gi|319995901|dbj|BAJ64672.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1] Length = 265 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 95/272 (34%), Gaps = 15/272 (5%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 EKI SL ++ + +++ Q+ + GV V + + + Sbjct: 4 EKITSL----------HNPRIQSIRALIQRREERRERGWFVAEGVRLVEEGVQAGWQAVM 53 Query: 70 QLLATKNALARLDWDANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 L + + L V VP + +I E L + + Sbjct: 54 ALYSADLSARGQALLPALHAQGAEVFEVPASLLKQISDTETPQGILTVFARRVY----SL 109 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +++ D++ DP N+G +LRSA A + T + S + ++ GA +P Sbjct: 110 PEPLDFVVIADNLRDPGNLGTLLRSAAAAGAQTVWLTPGTVDAFSPKVLRAGMGAHFRLP 169 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +S + G +++ P +AL++G E +G + + Sbjct: 170 VQEVSLEWMRDFRHQHPGMHLYLAEAENGTPCWDTDLTQPLALVIGGEAEGASLEMRALV 229 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + MPG ++LN + AA + L+ Sbjct: 230 DGNITIPMPGKSESLNAAVAAGILLFEVVRQR 261 >gi|309787684|ref|ZP_07682295.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella dysenteriae 1617] gi|308924434|gb|EFP69930.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella dysenteriae 1617] Length = 240 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 103/239 (43%), Gaps = 8/239 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGK 107 +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 IYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDG 61 Query: 108 EAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A D + L++LD V DPHN+GA LRSA A + Sbjct: 62 AVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAV 121 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A K A GA E +P IR++NL ++ + +G + ++ L Q Sbjct: 122 IVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLCQ 181 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ + Sbjct: 182 SKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS 240 >gi|294501480|ref|YP_003565180.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551] gi|294351417|gb|ADE71746.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551] Length = 252 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 104/277 (37%), Gaps = 27/277 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ ++ + K H + + + G H V A Sbjct: 1 MKQIDSVKNPQVKAWKKLH-------------------NKKDRDKQGLFMVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + N + +L+ ++ W+ + + V I + E + Sbjct: 42 IKN-KDCVKELIIRESIEVPAQWNID---GIEITVVNEAIIKLLSDTETPQGII---AVC 94 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + +Q +++LD V DP N+G I+R+A A + II + + + +S Sbjct: 95 FQTKHAEIIHTAQKVLLLDAVQDPGNLGTIIRTADAAGVEAIIVGEGSVDVYNPKVVRST 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GA+ H+P ++ L + K + N+ AL++G EG G+ Sbjct: 155 QGAIFHLPIVKGDLLEMISLLKEREIAVYGTSLQNGKVYTCVKPSNE-FALVVGNEGNGV 213 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K E ++ + G ++LNV+ A+ + LY + Sbjct: 214 SEKVLEQTDQNLYIPIYGKSESLNVAIASGILLYYLR 250 >gi|238787548|ref|ZP_04631346.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia frederiksenii ATCC 33641] gi|238724335|gb|EEQ15977.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia frederiksenii ATCC 33641] Length = 246 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 108/242 (44%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L+N ++ ++ K R ++ Q +D Sbjct: 2 SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLISELEAAGLVIQVASRQWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 V +A D + L+VLD V DPHN+GA LRSA A Sbjct: 62 VEGGVHQGIVARVREGRQYQENDLPALLASVETPFLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A+ K ASGA E++P I+++NL L+ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241 Query: 280 FA 281 A Sbjct: 242 RA 243 >gi|312793386|ref|YP_004026309.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180526|gb|ADQ40696.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor kristjanssonii 177R1B] Length = 270 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 117/284 (41%), Gaps = 26/284 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 IS +++E I +K H ++ + + + G+ V A+ Sbjct: 7 EFISSRENECIKRVKKLHDK-------------------KYREEFRSFIIEGLKLVKEAI 47 Query: 62 NNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLA 115 + I ++ ++ A R L ++ V P + + + + QG+ Sbjct: 48 DYQIECINLVMFSQQAKDRYQEFYWECKRLLEDGKIERVIEVPDKLFEYITTTSTPQGIL 107 Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 E + ++ ++N + ++V + + DP N+G ++R A AF D ++TTK + Sbjct: 108 AECNFVDKG-INFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPK 166 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 ++ G+L H+ +R + ++ + F + + + + + + +++G Sbjct: 167 TIRATMGSLFHMQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFCVVIGN 226 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E +G+ + AT + M G ++LN + AA++ LY + Sbjct: 227 ESEGVSDSFAKMATRKIKIPMAGKAESLNAAVAASIVLYELRKR 270 >gi|149276383|ref|ZP_01882527.1| putative tRNA:rRNA methyltransferase [Pedobacter sp. BAL39] gi|149232903|gb|EDM38278.1| putative tRNA:rRNA methyltransferase [Pedobacter sp. BAL39] Length = 255 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 57/255 (22%), Positives = 108/255 (42%), Gaps = 13/255 (5%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPF--PV 93 N + + N F++G+ +V A+ I + + + + L PV Sbjct: 3 NSRRPARPKENNEFIFGIRSVIEAIKAGKD-IESIYIQRGLTGGIILELKALLKDVDAPV 61 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146 VP + ++++ + HQG+ + + ++ + + L+++LD + D N Sbjct: 62 HNVPVEKLNRMT--QKNHQGVIAVISSITFQKIEDIIPAVYEKGETPLILILDGITDVRN 119 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI R+A I+ + S +A K+++GAL IP R NL + G Sbjct: 120 MGAIARTAACAGVHAIVVPTKNSAQINADAIKTSAGALFTIPVCRHPNLHKTALFLQECG 179 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 Q + + + + A+++GAE +G+ + A +A + M G I +LNVS Sbjct: 180 LQIVACTEKTNDLIYAPDYTTPTAIVMGAEDEGISNEIMRMANHLAKIPMIGEISSLNVS 239 Query: 267 NAAAVALYITQNHFA 281 +A V LY Sbjct: 240 VSAGVILYEAIRQRT 254 >gi|221133725|ref|ZP_03560030.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Glaciecola sp. HTCC2999] Length = 247 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 8/243 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTID 102 + +LYG+H ++A L ++I +L K + + ++ + +D Sbjct: 3 QQQDWLYGIHALTAVLEREPQRILELYIAKGRDDERLHKLINLARKEGISIQFCNKKVLD 62 Query: 103 KIVGKEAVHQGLA--LETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 E+ +A L LD L+VLD V DPHN+GA+LRSA A Sbjct: 63 DKSKGESHQGVVARAYPAKVLTETDLDTIISQSAKPFLLVLDGVTDPHNLGAVLRSADAA 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D +I K S S +A + K A GA + IP I+++NL L ++ +G + +++ Sbjct: 123 GVDAVIVPKDKSASLNATVRKVACGAADVIPLIQVTNLARTLSELQEQQIWVVGTAGEAR 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + +AL++GAEGKG+R T+E + L M G + +LNVS A + LY Sbjct: 183 QSVFDCDMAGPVALVMGAEGKGMRRLTRERCDELIKLPMLGTVSSLNVSVATGICLYEIV 242 Query: 278 NHF 280 Sbjct: 243 RQR 245 >gi|88858913|ref|ZP_01133554.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas tunicata D2] gi|88819139|gb|EAR28953.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas tunicata D2] Length = 248 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 112/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N ++G H+V A L + ++ A K RL+ L V+ + +T+D+ Sbjct: 3 NELIFGFHSVEAILAKEPERFIEIYALKGREDKRLNPILELAEQFGVSVQFMHRKTLDEK 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 E HQGL + + + + L+VLD V DPHN+GA LRSA A Sbjct: 63 ADGE-QHQGLIAKVKAGKTYSEKDLDEIIARHETPFLLVLDGVTDPHNLGACLRSADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + V K A GA E +P + ++NL L+++ G IG + ++ Sbjct: 122 VHAVIVPKDNSAKLNGVARKVACGAAETVPLVHVTNLARTLREIKDAGVWVIGTAGETDT 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + IAL++GAEG G+R T+E ++ + M G + +LNVS A + L+ Sbjct: 182 HVFDAKLTGPIALVMGAEGTGMRRLTREHCDTLVKIPMVGTVSSLNVSVATGICLFEILR 241 Query: 279 HFA 281 Sbjct: 242 QRN 244 >gi|326791660|ref|YP_004309481.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium lentocellum DSM 5427] gi|326542424|gb|ADZ84283.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium lentocellum DSM 5427] Length = 263 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 49/260 (18%), Positives = 92/260 (35%), Gaps = 7/260 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + K ++ +K + G+ V KI L+ T + Sbjct: 8 SPQNNVIKNIKELQKKKSARKSEGLFVIEGIRGVKEI--PSHVKIKYLITTSEVDEKELG 65 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V + I + QG + + +VL+++ D Sbjct: 66 AVKAEERLEVS----KEIYNSISDTQSPQGAMAVAYMPTYDLVHFNIEAGHYLVLENLQD 121 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-M 202 P N+G I+R+A AF G+ TK S + +S +L H+P + + + Sbjct: 122 PGNLGTIIRTAHAFDFKGVFITKGSVDLYSPKVVRSTMSSLFHVPIVIEEEIDTYMDFLK 181 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 KP+ +K+A+I+G EG G+ + +E + + MPG ++ Sbjct: 182 QKGVTLYTTALIPGAKPIYDVTFEEKVAIIIGNEGNGVSERVKEASDHTVIIPMPGAAES 241 Query: 263 LNVSNAAAVALYITQNHFAK 282 LN + A ++ +Y K Sbjct: 242 LNAAIATSICMYEITRQCQK 261 >gi|187935194|ref|YP_001884456.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum B str. Eklund 17B] gi|187723347|gb|ACD24568.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum B str. Eklund 17B] Length = 286 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 126/291 (43%), Gaps = 21/291 (7%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKM---QSFNQKSRHTS--QPENLFLYGVHTVSAAL 61 +++ K + +D K R N++ K+ + + + + + + G + V AL Sbjct: 2 RENTKAGNKRD----KNRENNKGNKREINKNRVVENNSYDNSFEEREDIIIGRNAVLEAL 57 Query: 62 NNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 R I L + + L +K V + +D + AVHQG+ Sbjct: 58 KA-ERTIETLYISNSKLEGSINAIISKAKDKKILIKEVDKRKLDSMC-NNAVHQGVIARV 115 Query: 119 APLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 P + + + +++LD V DPHN+G+I+R+A F GII KR S S Sbjct: 116 TPYEYSEVSDILELAEKKGENPFIVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSAS 175 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + ++ KS+ GA+EH+ R++NL + ++ G G +++ Q A+ Sbjct: 176 VTTMVYKSSVGAIEHVKVARVTNLNSVIDELKEKGIWVYGTDIRAEEYSYQTDFGGACAI 235 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 I+G EGKG+ T + + + M G I +LN S A + +Y K Sbjct: 236 IIGNEGKGISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMYEVLKGRLK 286 >gi|254804813|ref|YP_003083034.1| putative RNA methyltransferase [Neisseria meningitidis alpha14] gi|254668355|emb|CBA05407.1| putative RNA methyltransferase [Neisseria meningitidis alpha14] Length = 250 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 109/238 (45%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + + R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYVQEGKNDVRTREVLEKAANENIRVYFADADRLNAIS-K 65 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|225024199|ref|ZP_03713391.1| hypothetical protein EIKCOROL_01071 [Eikenella corrodens ATCC 23834] gi|224943224|gb|EEG24433.1| hypothetical protein EIKCOROL_01071 [Eikenella corrodens ATCC 23834] Length = 248 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 7/239 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + + +L A + + + PV V +D + Sbjct: 6 LIYGFHAVNARLWQNPKSLTELYALSGRHDTRMQQALEKAAQENIPVHFVEAARLDNLCR 65 Query: 107 KEAVH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A L LD + LL++LD + DPHN+GA LR A A + Sbjct: 66 HARHQGIAGFIDASHNHVHLDDVLDNLTEPPLLLILDGITDPHNLGACLRVADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G + L Sbjct: 126 IAPKNRSVGLNATVSKVACGAAETVPYIAVTNLARTLRELKERDIWIVGTDMGGEADLFH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +A ++G EG+G+R T+E ++ + M G +++LNVS + + L T+ A Sbjct: 186 YDIPAAVAWVMGNEGEGMRRLTREHCDALVSIPMLGTVESLNVSVSTGMVLAETRRQRA 244 >gi|187934593|ref|YP_001886663.1| RNA methyltransferase, TrmH family [Clostridium botulinum B str. Eklund 17B] gi|187722746|gb|ACD23967.1| RNA methyltransferase, TrmH family [Clostridium botulinum B str. Eklund 17B] Length = 260 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 6/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82 + + YK+ + ++ ++ ++ + G V A+ + +L + Sbjct: 6 SKENTIYKEAKKLKER-KNRNKINKYVIEGFRLVDEAIKASLDIDYLILTQVGYEKLDNY 64 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + + V + + E +A+ + + D V Sbjct: 65 INKDKIEKQKVYCITDNLFKDLTSTENPQGIIAIVNMENKNLDF----QGDFYLFCDKVQ 120 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+A A +GII +K + +S G+L ++P N ++ + Sbjct: 121 DPGNLGTIIRTAHAAGVNGIILSKGTVDIYNEKTIRSTMGSLFYMPIYYDDNEFSLIKSL 180 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF+ I S +S K +E K L +G EG G+ + + A + MPG ++ Sbjct: 181 KKDGFKLIVTSLESSKDFFKEDLKGKTILTVGNEGNGVSNEVLDLADRRVKIPMPGGAES 240 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ A ++ +Y Sbjct: 241 LNVAIATSIIIYEKIRQ 257 >gi|200386744|ref|ZP_03213356.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603842|gb|EDZ02387.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 243 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P L A+ + L++LD V DPHN+GA LRSA A Sbjct: 62 SD-GAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMPGRMALVMGAEGEGIRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 Sbjct: 241 QRT 243 >gi|311281268|ref|YP_003943499.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cloacae SCF1] gi|308750463|gb|ADO50215.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cloacae SCF1] Length = 243 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQVASRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P L A ++ L++LD V DPHN+GA LRSA A Sbjct: 62 S-EGAVHQGIIARVKPGRQYQENDLPDLLAQFDNPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|170767082|ref|ZP_02901535.1| RNA methyltransferase, TrmH family, group 3 [Escherichia albertii TW07627] gi|170124520|gb|EDS93451.1| RNA methyltransferase, TrmH family, group 3 [Escherichia albertii TW07627] Length = 243 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A H ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESHGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L++LD V DPHN+GA LRSA A Sbjct: 62 SDGGVHQGIIARVKPGRQYQENDLPDLIASLDQSFLLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 122 HAVIVPKDRSAQLNATARKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|261418277|ref|YP_003251959.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61] gi|319767763|ref|YP_004133264.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52] gi|261374734|gb|ACX77477.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61] gi|317112629|gb|ADU95121.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52] Length = 251 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 57/277 (20%), Positives = 106/277 (38%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ ++ K + + L G H V A Sbjct: 1 MKRIESPKNARVKQWKKLLTK-------------------KGRDETGLFLLEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + + +L+ + W+ PV V + I E A Sbjct: 42 IKSNA-PLVELIVDERTAVPPGWNV---TGVPVTIVTEAVMKAISSTETPQGIAA--VCR 95 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 LS L+ V+ + L+ D V DP N+G ++R+A A D +I + + + + ++ Sbjct: 96 QLSTELEGVKTALLI---DAVQDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVVRAT 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+L H+P ++ + + G G + ++ ++ AL+ G EG G+ Sbjct: 153 QGSLFHLPVVKGDLA-QWIARFKEQGIPVYGTALENAVDYRTVPQSPSFALLFGNEGSGV 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 RP T ++ + G ++LNV+ AA + LY Q Sbjct: 212 RPDLLRLTTENVYIPIYGRAESLNVAVAAGILLYSLQ 248 >gi|125623434|ref|YP_001031917.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|124492242|emb|CAL97171.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|300070181|gb|ADJ59581.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris NZ9000] Length = 252 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 56/277 (20%), Positives = 104/277 (37%), Gaps = 30/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +IS K ++K+ + K R+N + + G H + A Sbjct: 1 MEIISSKDNKKVKEARKLLTKKYRKN---------------------SYLIEGFHLLEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L I Q+ +N LA+L V V + + E+ +A Sbjct: 40 LKAGH-SIKQIFVEENKLAKLTAMIGSEKSLTDLSVNLVSKDVLKSLADSESPQGLIAEV 98 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 A + ++L++V DP N+G ++R+A A +I + S + Sbjct: 99 AIIEEVIDFSASK----FLLLENVQDPGNVGTMIRTADAAGFSAVILLGETADLYSPKVM 154 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S G+ H+ R++ + S + + AL++G EG Sbjct: 155 RSMQGSNFHLAIARMNEEECFAALKQAKISILTTTLSANSVSYKTVE-ESSFALVMGNEG 213 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ E+A + H+ MPG ++LNV+ AA + ++ Sbjct: 214 AGVSDFAVESADKLVHIDMPGQAESLNVAVAAGILMF 250 >gi|219849653|ref|YP_002464086.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485] gi|219543912|gb|ACL25650.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM 9485] Length = 261 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 94/256 (36%), Gaps = 8/256 (3%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLD 82 + K +++ Q+ + + + G+ V A+ + + ++ + + A Sbjct: 8 NPTIKMLRALRQR-KARDEQGRYLIEGIRLVGEAIQCGA-PLEMIIVAPDLLTSSFAHEL 65 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + + V TV + + + KE G+ +P D V + L V Sbjct: 66 VEHYIAGGGRVLTVSAEVLGSLASKEHPQ-GIIGVGRARYTPLADLVAGVNGWVALVDVA 124 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ILR+A G+I +++ GAL I + + L Sbjct: 125 DPGNLGTILRTADGAGFSGVILIGSTVDPFDPAAVRASMGALF-SQQIARAGWDELLAWR 183 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + IG S + L+LG+E +GL + ++ + M G + Sbjct: 184 QARSLPVIGSSDRGTVDYRTATYPRPLILVLGSERQGLSDEQLAACDTVVRIPMRGRSDS 243 Query: 263 LNVSNAAAVALYITQN 278 LN++ AA + +Y Sbjct: 244 LNLAVAAGILMYEITR 259 >gi|324112223|gb|EGC06201.1| RNA methyltransferase [Escherichia fergusonii B253] gi|325499715|gb|EGC97574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia fergusonii ECD227] Length = 243 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L++LD V DPHN+GA LRSA A Sbjct: 62 SDGAVHQGIIARVKPGRQYQENDLPDLLASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|302386867|ref|YP_003822689.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum WM1] gi|302197495|gb|ADL05066.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum WM1] Length = 259 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 107/258 (41%), Gaps = 5/258 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + K++ + ++K + G+ P+ +I L +++ + + + Sbjct: 4 SSANARVKQVMNLSKKVKARKTSGLFVTEGLRMFKEI---PADRIDSLFVSEDFI-KDEA 59 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLLMVLDHVN 142 L +TV + + + LAL + L A LMVL+++ Sbjct: 60 HKRLLAGMKYETVSREVFKVMSDTQTPQGILALVRQHAFRTEDLLAAPGPAFLMVLENIQ 119 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ILR+ G++ ++ + + + +S G++ +P++ +L +L+ + Sbjct: 120 DPGNLGTILRAGEGAGITGVLMSETTADIYNPKVIRSTMGSVFRVPFVYTEDLPASLKAL 179 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + G + + + E+E ++G E GL +T A + + M G +++ Sbjct: 180 KAGGVRLYAAHLNGRNNYEKEDYTVDTGFLVGNEANGLTDETAALADACVKIPMKGKVES 239 Query: 263 LNVSNAAAVALYITQNHF 280 LN + AA+V ++ Sbjct: 240 LNAAVAASVLMFEAARQR 257 >gi|183985047|ref|YP_001853338.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M] gi|254806447|sp|B2HJ20|Y5079_MYCMM RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MMAR_5079 gi|183178373|gb|ACC43483.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M] Length = 310 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 73/269 (27%), Positives = 123/269 (45%), Gaps = 10/269 (3%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79 A +R NH K+ ++ ++ E + G + V L + A Sbjct: 41 AHMRPNHPAAKRAKAQQRRPARGRTDETETVLGRNPVLECLRAGVPSTALYVALGVEADE 100 Query: 80 RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131 RL + P+ VP +D++ +HQG+AL+ P D Sbjct: 101 RLTESVSRAADSGIPILEVPRTDLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDTP 159 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA +P R Sbjct: 160 PALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVAR 219 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +NLT AL+ G + +GL + ++ +D I +++G+EGKGL ++T + Sbjct: 220 ATNLTRALKDWADRGVRVVGLDAGGDTAIDDLDGSDPIVVVVGSEGKGLSRLVRQTCDEV 279 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G ++LN S AA V L Sbjct: 280 VSVPMAGPTESLNASVAAGVVLAEIARQR 308 >gi|118619334|ref|YP_907666.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99] gi|254803872|sp|A0PV26|Y4155_MYCUA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MUL_4155 gi|118571444|gb|ABL06195.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99] Length = 310 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 73/269 (27%), Positives = 123/269 (45%), Gaps = 10/269 (3%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79 A +R NH K+ ++ ++ E + G + V L + A Sbjct: 41 AHMRPNHPAAKRAKAQQRRPARGRTDETETVLGRNPVLECLRAGVPSTALYVALGVEADE 100 Query: 80 RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131 RL + P+ VP +D++ +HQG+AL+ P D Sbjct: 101 RLTESVSRAADSGIPILEVPRTDLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDTP 159 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA +P R Sbjct: 160 PALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVAR 219 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +NLT AL+ G + +GL + ++ +D I +++G+EGKGL ++T + Sbjct: 220 ATNLTRALKDWADRGVRVVGLDAGGDTAIDDLDGSDPIVVVVGSEGKGLSRLVRQTCDEV 279 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G ++LN S AA V L Sbjct: 280 VSVPMAGPTESLNASVAAGVVLAEIARQR 308 >gi|15804769|ref|NP_290810.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 EDL933] gi|15834410|ref|NP_313183.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|16132002|ref|NP_418601.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|24115535|ref|NP_710045.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 2a str. 301] gi|26251072|ref|NP_757112.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli CFT073] gi|30065552|ref|NP_839723.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 2a str. 2457T] gi|74314665|ref|YP_313084.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella sonnei Ss046] gi|89110900|ref|AP_004680.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|91213729|ref|YP_543715.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli UTI89] gi|110644537|ref|YP_672267.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 536] gi|110808098|ref|YP_691618.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 5 str. 8401] gi|117626526|ref|YP_859849.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli APEC O1] gi|157158474|ref|YP_001465680.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli E24377A] gi|157163645|ref|YP_001460963.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli HS] gi|168751468|ref|ZP_02776490.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4113] gi|168754751|ref|ZP_02779758.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4401] gi|168760422|ref|ZP_02785429.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4501] gi|168766459|ref|ZP_02791466.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4486] gi|168774107|ref|ZP_02799114.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4196] gi|168780612|ref|ZP_02805619.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4076] gi|168784817|ref|ZP_02809824.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC869] gi|168801835|ref|ZP_02826842.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC508] gi|170021810|ref|YP_001726764.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ATCC 8739] gi|170083626|ref|YP_001732946.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170679577|ref|YP_001746575.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli SMS-3-5] gi|188494408|ref|ZP_03001678.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli 53638] gi|191165658|ref|ZP_03027498.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B7A] gi|191170707|ref|ZP_03032259.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11] gi|191174517|ref|ZP_03036015.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11] gi|193066002|ref|ZP_03047060.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E22] gi|193070849|ref|ZP_03051781.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E110019] gi|194426679|ref|ZP_03059233.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B171] gi|194434585|ref|ZP_03066842.1| RNA methyltransferase, TrmH family, group 3 [Shigella dysenteriae 1012] gi|194439536|ref|ZP_03071610.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli 101-1] gi|195935970|ref|ZP_03081352.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208806918|ref|ZP_03249255.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4206] gi|208813496|ref|ZP_03254825.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4045] gi|208818601|ref|ZP_03258921.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4042] gi|209399233|ref|YP_002273722.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4115] gi|215489524|ref|YP_002331955.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|217326510|ref|ZP_03442594.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. TW14588] gi|218551450|ref|YP_002385242.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia fergusonii ATCC 35469] gi|218556732|ref|YP_002389646.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli IAI1] gi|218561339|ref|YP_002394252.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli S88] gi|218692514|ref|YP_002400726.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ED1a] gi|218697929|ref|YP_002405596.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 55989] gi|218702877|ref|YP_002410506.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli IAI39] gi|218707791|ref|YP_002415310.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli UMN026] gi|227886777|ref|ZP_04004582.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 83972] gi|237703847|ref|ZP_04534328.1| RNA methyltransferase [Escherichia sp. 3_2_53FAA] gi|238903287|ref|YP_002929083.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BW2952] gi|253775195|ref|YP_003038026.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037194|ref|ZP_04871271.1| 23S rRNA-methyltransferase [Escherichia sp. 1_1_43] gi|254164109|ref|YP_003047217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli B str. REL606] gi|254796199|ref|YP_003081036.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|256019825|ref|ZP_05433690.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella sp. D9] gi|256025115|ref|ZP_05438980.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia sp. 4_1_40B] gi|260847010|ref|YP_003224788.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260858333|ref|YP_003232224.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|261225300|ref|ZP_05939581.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261255448|ref|ZP_05947981.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291285592|ref|YP_003502410.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Escherichia coli O55:H7 str. CB9615] gi|293402807|ref|ZP_06646904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1412] gi|293407907|ref|ZP_06651747.1| RNA methyltransferase [Escherichia coli B354] gi|293476491|ref|ZP_06664899.1| RNA methyltransferase [Escherichia coli B088] gi|298378337|ref|ZP_06988221.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1302] gi|300816519|ref|ZP_07096740.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 107-1] gi|300821273|ref|ZP_07101421.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 119-7] gi|300899718|ref|ZP_07117944.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 198-1] gi|300906010|ref|ZP_07123734.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 84-1] gi|300920795|ref|ZP_07137196.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 115-1] gi|300922413|ref|ZP_07138533.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 182-1] gi|300929288|ref|ZP_07144764.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 187-1] gi|300940667|ref|ZP_07155228.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 21-1] gi|300949140|ref|ZP_07163182.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 116-1] gi|300955237|ref|ZP_07167630.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 175-1] gi|300987255|ref|ZP_07178084.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 45-1] gi|300988642|ref|ZP_07178782.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 200-1] gi|301023421|ref|ZP_07187204.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 69-1] gi|301028002|ref|ZP_07191286.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 196-1] gi|301045987|ref|ZP_07193170.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 185-1] gi|301302597|ref|ZP_07208727.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 124-1] gi|301325944|ref|ZP_07219365.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 78-1] gi|301646627|ref|ZP_07246493.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 146-1] gi|306815605|ref|ZP_07449754.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli NC101] gi|307140874|ref|ZP_07500230.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli H736] gi|307314872|ref|ZP_07594464.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli W] gi|309796991|ref|ZP_07691391.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 145-7] gi|312965854|ref|ZP_07780080.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 2362-75] gi|312974012|ref|ZP_07788183.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1827-70] gi|331644927|ref|ZP_08346044.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H736] gi|331656008|ref|ZP_08356996.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M718] gi|331660755|ref|ZP_08361687.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA206] gi|331665844|ref|ZP_08366738.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA143] gi|331671085|ref|ZP_08371918.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA271] gi|331671329|ref|ZP_08372127.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA280] gi|331680310|ref|ZP_08380969.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H591] gi|331681199|ref|ZP_08381836.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H299] gi|332280964|ref|ZP_08393377.1| 23S rRNA ()-methyltransferase [Shigella sp. D9] gi|52783780|sp|P63177|RLMB_ECOLI RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|52783781|sp|P63179|RLMB_ECO57 RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|52783782|sp|P63180|RLMB_SHIFL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|54039247|sp|P63178|RLMB_ECOL6 RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|12519168|gb|AAG59376.1|AE005651_5 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|26111504|gb|AAN83686.1|AE016771_197 Hypothetical tRNA/rRNA methyltransferase yjfH [Escherichia coli CFT073] gi|537021|gb|AAA97076.1| ORF_o243 [Escherichia coli str. K-12 substr. MG1655] gi|1790623|gb|AAC77137.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|13364633|dbj|BAB38579.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|24054863|gb|AAN45752.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30043816|gb|AAP19535.1| hypothetical protein S4603 [Shigella flexneri 2a str. 2457T] gi|73858142|gb|AAZ90849.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|85676931|dbj|BAE78181.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K12 substr. W3110] gi|91075303|gb|ABE10184.1| hypothetical tRNA/rRNA methyltransferase YjfH [Escherichia coli UTI89] gi|110346129|gb|ABG72366.1| hypothetical tRNA/rRNA methyltransferase YjfH [Escherichia coli 536] gi|110617646|gb|ABF06313.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|115515650|gb|ABJ03725.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|157069325|gb|ABV08580.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli HS] gi|157080504|gb|ABV20212.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E24377A] gi|169756738|gb|ACA79437.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli ATCC 8739] gi|169891461|gb|ACB05168.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170517295|gb|ACB15473.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli SMS-3-5] gi|187770173|gb|EDU34017.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4196] gi|188014500|gb|EDU52622.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4113] gi|188489607|gb|EDU64710.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli 53638] gi|189001755|gb|EDU70741.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4076] gi|189357886|gb|EDU76305.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4401] gi|189364243|gb|EDU82662.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4486] gi|189368907|gb|EDU87323.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4501] gi|189374953|gb|EDU93369.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC869] gi|189376090|gb|EDU94506.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC508] gi|190904353|gb|EDV64062.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B7A] gi|190905197|gb|EDV64838.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11] gi|190908931|gb|EDV68518.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11] gi|192926325|gb|EDV80961.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E22] gi|192955795|gb|EDV86266.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E110019] gi|194415418|gb|EDX31686.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B171] gi|194417170|gb|EDX33282.1| RNA methyltransferase, TrmH family, group 3 [Shigella dysenteriae 1012] gi|194421535|gb|EDX37548.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli 101-1] gi|208726719|gb|EDZ76320.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4206] gi|208734773|gb|EDZ83460.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4045] gi|208738724|gb|EDZ86406.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4042] gi|209160633|gb|ACI38066.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4115] gi|209750198|gb|ACI73406.1| hypothetical protein ECs5156 [Escherichia coli] gi|209750200|gb|ACI73407.1| hypothetical protein ECs5156 [Escherichia coli] gi|209750202|gb|ACI73408.1| hypothetical protein ECs5156 [Escherichia coli] gi|209750204|gb|ACI73409.1| hypothetical protein ECs5156 [Escherichia coli] gi|209750206|gb|ACI73410.1| hypothetical protein ECs5156 [Escherichia coli] gi|215267596|emb|CAS12051.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|217322731|gb|EEC31155.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. TW14588] gi|218354661|emb|CAV01659.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli 55989] gi|218358992|emb|CAQ91652.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia fergusonii ATCC 35469] gi|218363501|emb|CAR01155.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli IAI1] gi|218368108|emb|CAR05915.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli S88] gi|218372863|emb|CAR20743.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli IAI39] gi|218430078|emb|CAR10923.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli ED1a] gi|218434888|emb|CAR15826.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli UMN026] gi|222035950|emb|CAP78695.1| 23S rRNA [Escherichia coli LF82] gi|226840300|gb|EEH72302.1| 23S rRNA-methyltransferase [Escherichia sp. 1_1_43] gi|226901759|gb|EEH88018.1| RNA methyltransferase [Escherichia sp. 3_2_53FAA] gi|227836350|gb|EEJ46816.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 83972] gi|238859752|gb|ACR61750.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BW2952] gi|242379702|emb|CAQ34526.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer, subunit of 23S rRNA 2'-O-ribose G2251 methyltransferase [Escherichia coli BL21(DE3)] gi|253326239|gb|ACT30841.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976010|gb|ACT41681.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli B str. REL606] gi|253980166|gb|ACT45836.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BL21(DE3)] gi|254595599|gb|ACT74960.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|257756982|dbj|BAI28484.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257762157|dbj|BAI33654.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260450993|gb|ACX41415.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli DH1] gi|281181276|dbj|BAI57606.1| putative RNA methyltransferase [Escherichia coli SE15] gi|281603642|gb|ADA76626.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Shigella flexneri 2002017] gi|284924362|emb|CBG37478.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 042] gi|290765465|gb|ADD59426.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Escherichia coli O55:H7 str. CB9615] gi|291320944|gb|EFE60386.1| RNA methyltransferase [Escherichia coli B088] gi|291429722|gb|EFF02736.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1412] gi|291472158|gb|EFF14640.1| RNA methyltransferase [Escherichia coli B354] gi|294489951|gb|ADE88707.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli IHE3034] gi|298280671|gb|EFI22172.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1302] gi|299878912|gb|EFI87123.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 196-1] gi|300302030|gb|EFJ58415.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 185-1] gi|300305875|gb|EFJ60395.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 200-1] gi|300317814|gb|EFJ67598.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 175-1] gi|300356729|gb|EFJ72599.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 198-1] gi|300397008|gb|EFJ80546.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 69-1] gi|300402177|gb|EFJ85715.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 84-1] gi|300407732|gb|EFJ91270.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 45-1] gi|300412218|gb|EFJ95528.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 115-1] gi|300421232|gb|EFK04543.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 182-1] gi|300451388|gb|EFK15008.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 116-1] gi|300454555|gb|EFK18048.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 21-1] gi|300462781|gb|EFK26274.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 187-1] gi|300526162|gb|EFK47231.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 119-7] gi|300530749|gb|EFK51811.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 107-1] gi|300842122|gb|EFK69882.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 124-1] gi|300847297|gb|EFK75057.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 78-1] gi|301075174|gb|EFK89980.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 146-1] gi|305851267|gb|EFM51722.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli NC101] gi|306905675|gb|EFN36204.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli W] gi|307556347|gb|ADN49122.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli ABU 83972] gi|307629252|gb|ADN73556.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli UM146] gi|308119404|gb|EFO56666.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 145-7] gi|310331546|gb|EFP98802.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1827-70] gi|312289097|gb|EFR16991.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 2362-75] gi|312948829|gb|ADR29656.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O83:H1 str. NRG 857C] gi|313646345|gb|EFS10807.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 2a str. 2457T] gi|315063494|gb|ADT77821.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli W] gi|315138734|dbj|BAJ45893.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Escherichia coli DH1] gi|315255525|gb|EFU35493.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 85-1] gi|315288461|gb|EFU47859.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 110-3] gi|315293538|gb|EFU52890.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 153-1] gi|315299061|gb|EFU58315.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 16-3] gi|320180693|gb|EFW55620.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella boydii ATCC 9905] gi|320193560|gb|EFW68197.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli WV_060327] gi|320200690|gb|EFW75276.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli EC4100B] gi|320644307|gb|EFX13372.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H- str. 493-89] gi|320649625|gb|EFX18149.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H- str. H 2687] gi|320655021|gb|EFX22982.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660528|gb|EFX27989.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O55:H7 str. USDA 5905] gi|320665797|gb|EFX32834.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. LSU-61] gi|323156003|gb|EFZ42165.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli EPECa14] gi|323161969|gb|EFZ47841.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli E128010] gi|323166663|gb|EFZ52421.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella sonnei 53G] gi|323189941|gb|EFZ75219.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli RN587/1] gi|323380427|gb|ADX52695.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli KO11] gi|323935410|gb|EGB31754.1| RNA methyltransferase [Escherichia coli E1520] gi|323940099|gb|EGB36293.1| RNA methyltransferase [Escherichia coli E482] gi|323946028|gb|EGB42065.1| RNA methyltransferase [Escherichia coli H120] gi|323950751|gb|EGB46629.1| RNA methyltransferase [Escherichia coli H252] gi|323955467|gb|EGB51231.1| RNA methyltransferase [Escherichia coli H263] gi|323960329|gb|EGB55969.1| RNA methyltransferase [Escherichia coli H489] gi|323965566|gb|EGB61020.1| RNA methyltransferase [Escherichia coli M863] gi|323970565|gb|EGB65824.1| RNA methyltransferase [Escherichia coli TA007] gi|324005243|gb|EGB74462.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 57-2] gi|324013823|gb|EGB83042.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 60-1] gi|324019358|gb|EGB88577.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 117-3] gi|324118745|gb|EGC12637.1| RNA methyltransferase [Escherichia coli E1167] gi|326346655|gb|EGD70389.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. 1044] gi|327250120|gb|EGE61839.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli STEC_7v] gi|331035902|gb|EGI08140.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H736] gi|331046362|gb|EGI18452.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M718] gi|331051797|gb|EGI23836.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA206] gi|331056895|gb|EGI28889.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA143] gi|331061674|gb|EGI33600.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA271] gi|331071174|gb|EGI42531.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA280] gi|331071773|gb|EGI43109.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H591] gi|331081420|gb|EGI52581.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H299] gi|332083177|gb|EGI88408.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella boydii 5216-82] gi|332103316|gb|EGJ06662.1| 23S rRNA ()-methyltransferase [Shigella sp. D9] gi|332346257|gb|AEE59591.1| conserved hypothetical protein [Escherichia coli UMNK88] gi|332749056|gb|EGJ79479.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-671] gi|332749325|gb|EGJ79746.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 4343-70] gi|332763228|gb|EGJ93471.1| 23S rRNA 2'-O-ribose methyltransferase [Shigella flexneri 2930-71] gi|333010329|gb|EGK29762.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri VA-6] gi|333011163|gb|EGK30577.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-272] Length = 243 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L++LD V DPHN+GA LRSA A Sbjct: 62 SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|323975479|gb|EGB70580.1| RNA methyltransferase [Escherichia coli TW10509] Length = 243 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D L++LD V DPHN+GA LRSA A Sbjct: 62 SDGAVHQGIIARVKPGRQYQENDLPDLIASLEQPFLLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|306844418|ref|ZP_07477008.1| tRNA/rRNA methyltransferase [Brucella sp. BO1] gi|306275231|gb|EFM56981.1| tRNA/rRNA methyltransferase [Brucella sp. BO1] Length = 297 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 84/255 (32%), Gaps = 4/255 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K ++S K + Q G+ V AL R + A + Sbjct: 35 NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93 Query: 87 L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V V + I I ++ + + + + + LD V D Sbjct: 94 ARTFAKGGLVLEVTEKVISAITRRDNPQMVAGVFEQQYHQLASLKPKGNDVYIALDRVRD 153 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A A G+I + S ++ G++ +P R S + Sbjct: 154 PGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + N + L++G E +GL +A + G +L Sbjct: 214 FSGLIVGTHLKGAVDYRTIPYANKPVILMMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273 Query: 264 NVSNAAAVALYITQN 278 N++ A V LY + Sbjct: 274 NLAIATGVMLYEIRR 288 >gi|169829514|ref|YP_001699672.1| putative tRNA/rRNA methyltransferase [Lysinibacillus sphaericus C3-41] gi|168994002|gb|ACA41542.1| Hypothetical tRNA/rRNA methyltransferase [Lysinibacillus sphaericus C3-41] Length = 254 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 95/274 (34%), Gaps = 24/274 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + K + + + + G H + A Sbjct: 1 MKRIESTQ------------------NALVKYWKKLATTRKERERSGEFIVEGFHLIEEA 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + ++ Q++ + + W + V +V + + + V Sbjct: 43 LKH-KEQVLQIIVREGVDLPMLWPIDGIAIVEVTSVVAKEFAETETSQGVFAICKQPV-- 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 +A + + ++++D V DP NIG ++R+A A D +I K + + ++A Sbjct: 100 ---LEEEAKTSWRKVLLIDAVQDPGNIGTMIRTADAAGLDAVILGKGCADIYNPKTLRAA 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP +R + P A+I+G EG G+ Sbjct: 157 QGSHFHIPVVREELTECVDFLQDQGVPVFGTALDEDAVPYSDIHHTGAFAIIMGNEGSGI 216 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +P+ + + G ++LNV+ A + LY Sbjct: 217 QPQLLAMTDQNIIIPILGQAESLNVAVATGIVLY 250 >gi|293417683|ref|ZP_06660305.1| RNA methyltransferase [Escherichia coli B185] gi|291430401|gb|EFF03399.1| RNA methyltransferase [Escherichia coli B185] Length = 243 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L++LD V DPHN+GA LRSA A Sbjct: 62 SDGAVHQGIIARVKPGRQYQENDLPELIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|332665335|ref|YP_004448123.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM 1100] gi|332334149|gb|AEE51250.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM 1100] Length = 268 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 101/259 (38%), Gaps = 4/259 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWD 84 + K + +K+R + G+ V AL L + + A L Sbjct: 11 QNPLIKNIGILLEKARERRKQGLFVAEGLIEVGMALRAGYEVEQLLYDPEITSFAALQSL 70 Query: 85 ANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 LP P + V ++KI + V +A+ P + + + L++VL+ V Sbjct: 71 PKLPANLPQKLIEVSGSVMEKIAYRANVPNVVAVLKTPERALNNFSPGKNPLILVLETVE 130 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 P N+GAILR+A A + + + + +++ GA+ +P ++ DAL + Sbjct: 131 KPGNLGAILRTADAAGVHAVFLCDPQTDWYNPNVIRASLGAVFTVPVFTVAAA-DALNWL 189 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + ++ P + IA ++G E G+ E A + M G + + Sbjct: 190 QMHKIAILATHLEASYPYFDCDLSGAIAFVMGTEANGISNFWVEAAQQRVIIPMHGQVDS 249 Query: 263 LNVSNAAAVALYITQNHFA 281 +NVS + A+ L+ Sbjct: 250 MNVSVSTAILLFEALRQRK 268 >gi|238795294|ref|ZP_04638873.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia intermedia ATCC 29909] gi|238725379|gb|EEQ16954.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia intermedia ATCC 29909] Length = 246 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 108/242 (44%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L+N ++ ++ K R ++ Q +D Sbjct: 2 SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLVAELEAAGLVIQVASRQWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 V +A D + L+VLD V DPHN+GA LRSA A Sbjct: 62 VEGGVHQGIVARVREGRQYQENDLPALLESVDMPFLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A+ K ASGA E++P I+++NL L+ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRLLQEHNVWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEVVRQ 241 Query: 280 FA 281 A Sbjct: 242 RA 243 >gi|329119920|ref|ZP_08248594.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Neisseria bacilliformis ATCC BAA-1200] gi|327464076|gb|EGF10387.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Neisseria bacilliformis ATCC BAA-1200] Length = 276 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 114/239 (47%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+A L + I +L ++ A R + V ++ I Sbjct: 32 LIYGFHAVNARLWQNPKSITELYVQQDKSDARTREVLEKAADENVRVHFADASRLNAIA- 90 Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+A L LD +R L+VLD + DPHN+GA LR+A A Sbjct: 91 KGARHQGVAGFIDASRNHVHLEDVLDNLREPPFLLVLDGITDPHNLGACLRTADAMGVHA 150 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L ++ +G IG + + L Sbjct: 151 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLCELKEYGIWIIGTDTGGESDLY 210 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D +A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 211 HTDLPDSVAWVMGNEGEGMRRLTREHCDMLVAIPMFGTVESMNVSVSAGMVLGETRRQR 269 >gi|254718366|ref|ZP_05180177.1| tRNA/rRNA methyltransferase (SpoU) [Brucella sp. 83/13] gi|265983327|ref|ZP_06096062.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13] gi|306839597|ref|ZP_07472401.1| tRNA/rRNA methyltransferase [Brucella sp. NF 2653] gi|264661919|gb|EEZ32180.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13] gi|306405295|gb|EFM61570.1| tRNA/rRNA methyltransferase [Brucella sp. NF 2653] Length = 297 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 84/255 (32%), Gaps = 4/255 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K ++S K + Q G+ V AL R + A + Sbjct: 35 NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93 Query: 87 L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V V + I I ++ + + + + + LD V D Sbjct: 94 ARTFAKGGLVLEVTEKVISAITRRDNPQMVAGVFEQQYHQLASLKPKGNDVYVALDRVRD 153 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A A G+I + S ++ G++ +P R S + Sbjct: 154 PGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + N + L++G E +GL +A + G +L Sbjct: 214 FSGLVVGTHLKGAVDYRTIPYANKPVILMMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273 Query: 264 NVSNAAAVALYITQN 278 N++ A V LY + Sbjct: 274 NLAIATGVMLYEIRR 288 >gi|291295473|ref|YP_003506871.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279] gi|290470432|gb|ADD27851.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279] Length = 266 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 85/256 (33%), Gaps = 5/256 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWD 84 + K ++ ++ + + G + AL I AR Sbjct: 8 NPRIKAAAELKER-KNRERTGTFLIEGAREIERALAAGLEVIEAYCGEPLSPEEARAVAH 66 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + V + + KI +E LA+ P S ++ LL+V + P Sbjct: 67 LSRALGLEVHELSEAALKKISSREHPAGVLAVARMPRPSLAAFQPSSNALLLVSVGLEKP 126 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GA+LRSA A D ++ V+ S + + L + Sbjct: 127 GNLGALLRSADAAGADAVLVAGGVDLYSPQVIRN--STGVVFSLPTFAAPEQAVLDWLLQ 184 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + + + +A++LG E +GL E A + M G +LN Sbjct: 185 HNIPIVATTPHTHQTYWDVDLRGPVAIVLGTEHQGLSQTWLERAARKVRIPMQGQADSLN 244 Query: 265 VSNAAAVALYITQNHF 280 VS AA+ LY Sbjct: 245 VSVTAALMLYEAVRQR 260 >gi|194098420|ref|YP_002001479.1| RNA methylase [Neisseria gonorrhoeae NCCP11945] gi|193933710|gb|ACF29534.1| RNA methylase [Neisseria gonorrhoeae NCCP11945] Length = 250 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + +A R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEGILENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDIGGNADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|306842563|ref|ZP_07475214.1| tRNA/rRNA methyltransferase [Brucella sp. BO2] gi|306287419|gb|EFM58899.1| tRNA/rRNA methyltransferase [Brucella sp. BO2] Length = 297 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 84/255 (32%), Gaps = 4/255 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K ++S K + Q G+ V AL R + A + Sbjct: 35 NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93 Query: 87 L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V V + I I ++ + + + + + LD V D Sbjct: 94 ARTFAKGGLVLEVTEKVISAITRRDNPQMVAGVFEQQYHQLASLKPKGNDVYIALDRVRD 153 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+R+A A G+I + S ++ G++ +P R S + Sbjct: 154 PGNLGTIIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + N + L++G E +GL +A + G +L Sbjct: 214 FSGLVVGTHLKGAVDYRTIPYANKPVILMMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273 Query: 264 NVSNAAAVALYITQN 278 N++ A V LY + Sbjct: 274 NLAIATGVMLYEIRR 288 >gi|296100947|ref|YP_003611093.1| 23S rRNA 2'-O-methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055406|gb|ADF60144.1| 23S rRNA 2'-O-methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 244 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 105/243 (43%), Gaps = 8/243 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLMPLIHALEAQGVVIQLANRQFLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D ++ ++LD V DPHN+GA LRSA A Sbjct: 62 SEGAVHQGIIARVKPGRQYQENDLPDLIAALDNPFFLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FAK 282 + Sbjct: 242 RGE 244 >gi|269798074|ref|YP_003311974.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula DSM 2008] gi|269094703|gb|ACZ24694.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula DSM 2008] Length = 243 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 116/239 (48%), Gaps = 10/239 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ G + V AL + R I ++L +++ + D V+ P + ++K Sbjct: 4 YIVGRNAVKEALKSG-RSIQRILVSEDRVKTGLADIVDLAKSQGIEVRPTPVKQMNKY-D 61 Query: 107 KEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + + L + LL++ D V DPHN+GAI+R+A Sbjct: 62 LEVPHQGVIALVSAVQFKELGEVLQETTHEVPLLILTDGVEDPHNMGAIIRTAECAGATA 121 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ KR++ +A +AK+++GA+E IP ++I N+T ++++ GF +G + + L Sbjct: 122 VLIPKRHNAPINATVAKTSAGAIEQIPLVQIGNVTQTIKQLQKQGFWVMGAHMEGDRTLY 181 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G EGKG+ +E + + M G + +LN S AAAV +Y Sbjct: 182 EADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQR 240 >gi|269797956|ref|YP_003311856.1| tRNA/rRNA methyltransferase (SpoU) [Veillonella parvula DSM 2008] gi|269094585|gb|ACZ24576.1| tRNA/rRNA methyltransferase (SpoU) [Veillonella parvula DSM 2008] Length = 264 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 59/282 (20%), Positives = 101/282 (35%), Gaps = 22/282 (7%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS-- 58 M I K +++ K++ S Q+ ++ + + G+ ++ Sbjct: 1 MEFIQSK------------------DNKTIKRIISLRQR-KNRQKNGEYIVEGIRSIRDI 41 Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 AA+ + + ++ D + P DK V QG+ Sbjct: 42 AAMGAVKTIVIRESKAQDKNILDLLDLDTVQSVPKYIAQDPVFDK-VDNTVNGQGVVAIV 100 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + L + LD V DP N+G I+R+AVA GI K + + Sbjct: 101 SKPTYDIESISIVDGLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVR 160 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 S AL IP LT + + + + P + L+LG EG Sbjct: 161 STMSALHKIPLYEDITLTLLHDMVTESNMTSYVTALEHSNPYHTVRYAKRTMLVLGNEGN 220 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G+ P+ T+ + M G +++LNVS AAA+ +Y Q Sbjct: 221 GVTPEVMNLCTNRIMIPMYGDMESLNVSVAAALCMYKVQEQL 262 >gi|332160030|ref|YP_004296607.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607412|emb|CBY28910.1| 23s rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia enterocolitica subsp. palearctica Y11] gi|325664260|gb|ADZ40904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862086|emb|CBX72252.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia enterocolitica W22703] Length = 246 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 110/242 (45%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104 + +YG+H+V A L+N ++ ++ K R ++ Q +D Sbjct: 2 SEIIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVIQVASRQWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 V +A D + LL+VLD V DPHN+GA LRSA A Sbjct: 62 VEGGVHQGIVARVREGRQYQENDLPALLESVETPLLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A+ K ASGA E++P I+++NL L+ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241 Query: 280 FA 281 A Sbjct: 242 RA 243 >gi|168188126|ref|ZP_02622761.1| rRNA methylase [Clostridium botulinum C str. Eklund] gi|169294044|gb|EDS76177.1| rRNA methylase [Clostridium botulinum C str. Eklund] Length = 261 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 57/281 (20%), Positives = 102/281 (36%), Gaps = 26/281 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MNLI K + I ++ +K ++ Q E + G V A Sbjct: 1 MNLIESKDNTLIKYVRKL-------------------RKKKYRVQEEKFLVEGFRFVEEA 41 Query: 61 LNNPSRKIFQLLAT--KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + + L+ K + + + V + + ++ Sbjct: 42 LKSTFKISHVLVGESAKEKCNSFNIFNIVSENTKISLVKDEILKELCETNNPQG----II 97 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 A + + ++ S ++ D V DP N+G I+RSA A G+I TK + + Sbjct: 98 AIVDNKIINIEDKSGFYVLADKVQDPGNMGTIIRSANASGALGVIVTKGTVDIYNDKTLR 157 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 S G++ IP I + S GF+ I S D++ K+ + +G EG Sbjct: 158 STMGSIFKIPIIEDNEFEIINVLK-SKGFKLIVSSLDTENNFFDIDLTGKVIICVGNEGN 216 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 G+ + + MPG ++LN AA++ +Y Sbjct: 217 GVSDEVYSLGDEKVKIPMPGNAESLNAGVAASIMMYEVVRQ 257 >gi|282896219|ref|ZP_06304242.1| tRNA/rRNA methyltransferase (SpoU) [Raphidiopsis brookii D9] gi|281198908|gb|EFA73786.1| tRNA/rRNA methyltransferase (SpoU) [Raphidiopsis brookii D9] Length = 263 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 103/256 (40%), Gaps = 8/256 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA--LNNPSRKIFQLLATKNALARLDW 83 + K+++ + ++ + + L G H ++ A +N P + + +N+ + L Sbjct: 6 QNPLVKQIRKLH-SAKERHKQQLFVLEGTHLIAEACSVNYPLETVCCTIDWQNSHSELWQ 64 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + V+ V + + + A A + + + + L + L+ + D Sbjct: 65 NVCNA-CHRVEIVSQEVLAAM----ATTVQPDGVVAMVKRCEENPIPITGLALALETIQD 119 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+R+A A G+ + + + ++++G + NL D +Q Sbjct: 120 PGNLGTIIRTAAAVDASGLWLSNDSVDLDHPKVLRASAGQWFRLKKQVSHNLKDTVQDCQ 179 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G Q + ++ Q + ++LG EG GL A + + +++L Sbjct: 180 RGGMQVVATLPTAELTYWQVDWSLPSLILLGNEGAGLSDDLATMANIQVKIPLSPQVESL 239 Query: 264 NVSNAAAVALYITQNH 279 NV+ +AA+ LY Q Sbjct: 240 NVAISAALILYEAQRQ 255 >gi|282850301|ref|ZP_06259680.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula ATCC 17745] gi|294793809|ref|ZP_06758946.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. 3_1_44] gi|282579794|gb|EFB85198.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula ATCC 17745] gi|294455379|gb|EFG23751.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. 3_1_44] Length = 243 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 111/238 (46%), Gaps = 8/238 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 ++ G + V AL + L++ L NL V+ P + ++K Sbjct: 4 YIVGRNAVKEALKSGRSIQRILVSEDKVKTGLADIVNLAKSQGIEVRPTPVKQMNKY-DL 62 Query: 108 EAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E HQG+ + + L + LL++ D V DPHN+GAI+R+A + Sbjct: 63 EVPHQGVIALVSAVQFKELGEVLQETTHEVPLLILTDGVEDPHNMGAIIRTAECAGATAV 122 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + KR++ +A +AK+++GA+E IP ++I N+ ++++ GF +G + + L + Sbjct: 123 LIPKRHNAPINATVAKTSAGAIEQIPLVQIGNVVQTIKQLQKQGFWVMGAHMEGDRTLYE 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +++G EGKG+ +E + + M G + +LN S AAAV +Y Sbjct: 183 ADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQR 240 >gi|15895625|ref|NP_348974.1| rRNA methylase [Clostridium acetobutylicum ATCC 824] gi|15025369|gb|AAK80314.1|AE007736_4 RRNA methylase, YSGA B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] gi|325509773|gb|ADZ21409.1| RRNA methylase [Clostridium acetobutylicum EA 2018] Length = 261 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 56/258 (21%), Positives = 109/258 (42%), Gaps = 9/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + + K+++ N+K +H ++ + G+ V AL + KI L ++ + Sbjct: 7 SKENSIIKEVKKLNEK-KHRDLKKSFIVEGLRFVREALESD-FKIQYLFVSEKNYDKFIL 64 Query: 84 DANL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 F V V + I + A + + M++D Sbjct: 65 KELKELIKKEFQVIKVTESILKDICNTQTPQG----IVAVVQYKEVAWKLTKGFYMLVDK 120 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A G+I TK + ++ G++ IP I + ++ Sbjct: 121 VQDPGNMGTIIRTANAAGALGVIITKGTVDIYNNKTLRATMGSIFKIPIIFEDDNFSKIK 180 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 ++ GF+ I S D++ N+K+ + +G EG G+ K + + + + MPG + Sbjct: 181 ELKKNGFKIIASSLDTEHNFYDVSLNEKLIIAVGNEGNGISDKIVDISDTKVKIPMPGNV 240 Query: 261 KALNVSNAAAVALYITQN 278 ++LNV AAA+ ++ Sbjct: 241 ESLNVGVAAAIMMFEYVR 258 >gi|320190688|gb|EFW65338.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli O157:H7 str. EC1212] gi|323171612|gb|EFZ57258.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli LT-68] gi|323182286|gb|EFZ67696.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1357] gi|326345488|gb|EGD69231.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli O157:H7 str. 1125] gi|332083729|gb|EGI88947.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella dysenteriae 155-74] gi|332761878|gb|EGJ92152.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 2747-71] gi|333009255|gb|EGK28711.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-218] gi|333011990|gb|EGK31375.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-304] gi|333012643|gb|EGK32023.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-227] Length = 240 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 103/239 (43%), Gaps = 8/239 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGK 107 +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 IYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDG 61 Query: 108 EAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A D + L++LD V DPHN+GA LRSA A + Sbjct: 62 AVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAV 121 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A K A GA E +P IR++NL ++ + +G + ++ L Q Sbjct: 122 IVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQ 181 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ + Sbjct: 182 SKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS 240 >gi|168181825|ref|ZP_02616489.1| RNA methyltransferase, TrmH family [Clostridium botulinum Bf] gi|237796588|ref|YP_002864140.1| TrmH family RNA methyltransferase [Clostridium botulinum Ba4 str. 657] gi|182675129|gb|EDT87090.1| RNA methyltransferase, TrmH family [Clostridium botulinum Bf] gi|229263217|gb|ACQ54250.1| RNA methyltransferase, TrmH family [Clostridium botulinum Ba4 str. 657] Length = 259 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 54/262 (20%), Positives = 108/262 (41%), Gaps = 9/262 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ K+++ +K ++ +Q ++ + G AL + S + ++ + +L +L+ Sbjct: 4 SKDNQLIKEVRKLREK-KYRTQNKSFIIEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61 Query: 84 ---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 N+ + V + I G QG+ LD +L+ D Sbjct: 62 LYKKYNINNDIETYVVSYSVLKSI-GNTENPQGIVSVINYFKKEKLDLQNGFYILV--DK 118 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A G+ITTK + +S G++ +IP I NL Sbjct: 119 VQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENLEVVKS 178 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + + +K+D + + +G EG G+ + + MPG Sbjct: 179 LQKKGFKLLVSSLDTNSNFYDVNMKDD-MIIAVGNEGNGISEVLNTLSDIKVKIPMPGAA 237 Query: 261 KALNVSNAAAVALYITQNHFAK 282 ++LNV+ A ++ + K Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259 >gi|82699065|ref|YP_413639.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar Abortus 2308] gi|189023403|ref|YP_001934171.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] gi|237814620|ref|ZP_04593618.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus str. 2308 A] gi|254696574|ref|ZP_05158402.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 2 str. 86/8/59] gi|254731487|ref|ZP_05190065.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 4 str. 292] gi|260546424|ref|ZP_05822164.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] gi|260759230|ref|ZP_05871578.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260760952|ref|ZP_05873295.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|82615166|emb|CAJ10105.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar Abortus 2308] gi|189018975|gb|ACD71697.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] gi|237789457|gb|EEP63667.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus str. 2308 A] gi|260096531|gb|EEW80407.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] gi|260669548|gb|EEX56488.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260671384|gb|EEX58205.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] Length = 297 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 85/255 (33%), Gaps = 4/255 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K ++S K + Q G+ V AL R + A + Sbjct: 35 NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93 Query: 87 L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V V + I I ++ + + + + + + LD V D Sbjct: 94 ARTFAKGGLVLEVTEKVISAITRRDNLQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRD 153 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A A G+I + S ++ G++ +P R S + Sbjct: 154 PGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + N I LI+G E +GL +A + G +L Sbjct: 214 FSGLVVGTHLKGAVDYRTIPYANKPIILIMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273 Query: 264 NVSNAAAVALYITQN 278 N++ A V LY + Sbjct: 274 NLAIATGVMLYEIRR 288 >gi|288941318|ref|YP_003443558.1| TrmH family RNA methyltransferase [Allochromatium vinosum DSM 180] gi|288896690|gb|ADC62526.1| RNA methyltransferase, TrmH family, group 3 [Allochromatium vinosum DSM 180] Length = 247 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 109/240 (45%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G+H+V AAL + + ++ + R D ++ V +++ Sbjct: 7 VGGIHSVRAALKFGAEGVDEVWLERARRDRRLQELADLAREAGIRLRQVERAELER-AAA 65 Query: 108 EAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG S T LD + L++LD V DPHN+GA LR+A A Sbjct: 66 GVNHQGALAWVRVPSSRTESDLAALLDRLDVPPFLLLLDEVQDPHNLGACLRTAEAVGVQ 125 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K + + V+ K ASGA E +PY++++NL + + G IG + ++ L Sbjct: 126 AVIAPKDNAVGLTPVVCKVASGAAETLPYVQVTNLARVMDALKERGIWLIGAAGEASDEL 185 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L++GAEG GLR T+E + L M G +++LNVS AA V LY Sbjct: 186 YAADLTGPLGLVMGAEGSGLRRLTRERCDRLVRLPMCGQVESLNVSVAAGVCLYEALRQR 245 >gi|212709961|ref|ZP_03318089.1| hypothetical protein PROVALCAL_01012 [Providencia alcalifaciens DSM 30120] gi|212687370|gb|EEB46898.1| hypothetical protein PROVALCAL_01012 [Providencia alcalifaciens DSM 30120] Length = 245 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 110/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++I ++ K R V+ Q +D Sbjct: 2 SEIIYGIHAVKALLERSPQRIKEVYILKGREDRRLMPIVHEIEALGIVVQVANRQWMDAQ 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P L S L++LD V DPHN+GA LRSA A Sbjct: 62 T-EGAVHQGIIANVLPGKQYQEGDLPDLLESTESPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E++P IR++NL L+ + + +G + ++ Sbjct: 121 VHAVIVPKDKSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEYNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 NLYQSKLTGSVALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 Sbjct: 241 QRI 243 >gi|121634735|ref|YP_974980.1| putative RNA methylase [Neisseria meningitidis FAM18] gi|120866441|emb|CAM10187.1| putative RNA methylase [Neisseria meningitidis FAM18] gi|254672232|emb|CBA05193.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis alpha275] gi|325130080|gb|EGC52867.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis OX99.30304] gi|325132185|gb|EGC54881.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M6190] gi|325134100|gb|EGC56753.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M13399] gi|325136132|gb|EGC58741.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M0579] gi|325138117|gb|EGC60690.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis ES14902] gi|325142210|gb|EGC64631.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis 961-5945] gi|325198165|gb|ADY93621.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis G2136] gi|325206236|gb|ADZ01689.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M04-240196] gi|325207967|gb|ADZ03419.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis NZ-05/33] Length = 250 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + + R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYVQEGKNDVRTREVLEKAANENIRVYFADADRLNAIS-K 65 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K ASGA E +PYI ++NL L+++ +G IG L Sbjct: 126 IAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|332521021|ref|ZP_08397481.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] gi|332043551|gb|EGI79747.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] Length = 266 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 87/256 (33%), Gaps = 3/256 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K++ KSR + + G+ ++ AL L + Sbjct: 10 QNTLVKQIVLLKDKSRERKKTGLFIVEGLREITLALKGNYNLKTILFYPELCDVNTLESL 69 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + + KI +E +A+ +T L + L++V + P Sbjct: 70 GNL-NAEIIEISKDVYTKIAYRETTEGIIAIAKTKENNFENLSFNTKNPLILVAEAPEKP 128 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIGAILR+A A + D +I +S I + + ++S Sbjct: 129 GNIGAILRTADAANIDAVII-ANPKTDLYNPNIIRSSVGCLFTNQIATGSTEAIINFLNS 187 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G + ++ A+++G E GL + A + M G I ++N Sbjct: 188 KGINIYAAILQESQEYHKQDFTTPTAIVVGTEATGLSNYWRNAAKKNIKIPMQGAIDSMN 247 Query: 265 VSNAAAVALYITQNHF 280 VS AA + ++ + Sbjct: 248 VSVAAGILIFEAKRQR 263 >gi|294672913|ref|YP_003573529.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23] gi|294472688|gb|ADE82077.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23] Length = 247 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 96/256 (37%), Gaps = 20/256 (7%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K + + QKS + + G + + + + KN Sbjct: 10 QNAKIKHVVALQQKSSLRREEGLFVVEGQREIEHCKACGYEVVEEYIRDKN--------- 60 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V PQ +K+ + + +A+ + ++ S L++VL+ V P Sbjct: 61 ----------VSPQVYEKMAYRGSTEGHIAVVRCKEHTLEKLQLKESPLIVVLESVEKPG 110 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAILRSA A D +I + + + +++ G + + + + + + Sbjct: 111 NLGAILRSAEAAGIDALIVCDPLTDMYNPNVIRASIGGVF-CVPTAVCSSQECIAFLKEH 169 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + + A+++G E GL + +E A + + M G + +LNV Sbjct: 170 GIKILTAQLQDSYEYYDYDMTQGTAIVMGTESTGLTNQWREAADAHIRIPMLGRLDSLNV 229 Query: 266 SNAAAVALYITQNHFA 281 S +AA+ +Y Sbjct: 230 SVSAAILMYEAVRQRN 245 >gi|153855859|ref|ZP_01996834.1| hypothetical protein DORLON_02856 [Dorea longicatena DSM 13814] gi|149751827|gb|EDM61758.1| hypothetical protein DORLON_02856 [Dorea longicatena DSM 13814] Length = 265 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 58/258 (22%), Positives = 112/258 (43%), Gaps = 11/258 (4%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPH 89 + + K + + + G + V A + K++ L ++ R H Sbjct: 8 HDKKMHDKKSYDKKENENIIEGRNAVMEAFRSGKPVDKLYVLDGCQDGAVRSIIREARKH 67 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVN 142 + V ++++ + HQG+ A ++ + L++LD++ Sbjct: 68 DTILNFVEKDRLNQLS-ETGKHQGVIASVAAYEYAEVEDMLKLAEEKGEDPFLIILDNIE 126 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DPHN+GAI+R+A G+I KR + +A +A++++GAL + P +++NL ++ + Sbjct: 127 DPHNLGAIIRTANQAGAHGVIIPKRRAVGLTATVARTSAGALNYTPVAKVTNLVKTMEDL 186 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G + D + +K I L++G EG+G+ ++T A + M G I + Sbjct: 187 KKKGLWFVCADMDGDVMYDVNMK-GPIGLVIGNEGEGVGRLVKDTCDFTARIPMKGDIDS 245 Query: 263 LNVSNAAAVALYITQNHF 280 LN S AA V Y Sbjct: 246 LNASVAAGVLAYEIVRQR 263 >gi|126665195|ref|ZP_01736178.1| RNA methyltransferase, TrmH family, group 3 [Marinobacter sp. ELB17] gi|126630565|gb|EBA01180.1| RNA methyltransferase, TrmH family, group 3 [Marinobacter sp. ELB17] Length = 266 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 113/242 (46%), Gaps = 12/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 F++G H V A L ++ Q+ ++ + + + V + +D Sbjct: 24 FVFGWHAVEAVLKREPERLLQVWIQTGRQDKRVKSTTELLDTLGVSWEIVHRKLLD--SR 81 Query: 107 KEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 VHQG+ + + D L++LD V DPHN+GA +R+A A Sbjct: 82 VAGVHQGIVASVSESREWSEDDLLAMLANSEKPPFLLILDGVTDPHNLGACMRTADAVGV 141 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S + + V K A GA E +P++R++NL L+ + G +G + ++ Sbjct: 142 QAVIVPKDKSATLTPVARKVACGAAETVPFVRVTNLARLLRTLQEQGVWLVGTAGEASIT 201 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEGKG+R T+E + ++ M G +++LNVS A+ V LY Sbjct: 202 LHQADLTGPLALVMGAEGKGMRRLTREHCDQLINIPMVGDVESLNVSVASGVCLYEALRQ 261 Query: 280 FA 281 + Sbjct: 262 RS 263 >gi|119471828|ref|ZP_01614161.1| 23S rRNA (Gm2251)-methyltransferase [Alteromonadales bacterium TW-7] gi|119445318|gb|EAW26607.1| 23S rRNA (Gm2251)-methyltransferase [Alteromonadales bacterium TW-7] Length = 247 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKI 104 N ++G H+V A L + ++ A K + D V+ + + +D Sbjct: 3 NELIFGFHSVEAILAKEPERFLEIYALKGRDDKRLTPIIDEARKFGISVQFMQRKALDNK 62 Query: 105 VGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 E +A A D A + L+VLD + DPHN+GA LRSA A Sbjct: 63 SKDEQHQGIIANVKAAPTYNEKDLDVIIAREETPFLLVLDGITDPHNLGACLRSADAAGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 II K S + K A GA E +P I+++NL L+++ G +G + ++ Sbjct: 123 HAIIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGETDTH 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +A+++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 183 VFDASLTGPMAIVMGAEGEGMRRLTREHCDVLVKIPMAGSVSSLNVSVATGICLFEVLRQ 242 Query: 280 FA 281 Sbjct: 243 RN 244 >gi|116872590|ref|YP_849371.1| rRNA methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741468|emb|CAK20592.1| rRNA methyltransferase, TrmH family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 252 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 107/278 (38%), Gaps = 26/278 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K++++ + K + + + G H V A Sbjct: 1 MEQIQSIKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +LL + +W L + V + I ++ + QG+ Sbjct: 42 LRQDG-LVLELLVSSGVSVPEEW---LKGDYDVFEIS-AEISHLISETMTEQGVFAVVTI 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L+++D V DP N+G ++R+A A D +I + + + + +S Sbjct: 97 SE--PDMMLLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVILGRGSADLYNPKVIRST 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP I+ + + K L K + +AL++G EG G+ Sbjct: 155 QGSHFHIPVIQADLFDWIANLEEEGVPVIGAVLDEQAKSLNDMPKRETLALMVGNEGNGI 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+ QE + ++ + G ++LNV+ AA + LY + Sbjct: 215 SPELQERLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252 >gi|315302761|ref|ZP_07873535.1| RNA methyltransferase [Listeria ivanovii FSL F6-596] gi|313628869|gb|EFR97228.1| RNA methyltransferase [Listeria ivanovii FSL F6-596] Length = 252 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 57/278 (20%), Positives = 106/278 (38%), Gaps = 26/278 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K++++ + K + + + G H V A Sbjct: 1 MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+ + +LL +K+ +W L + V + + I A+ Sbjct: 42 LHQDGLVV-ELLVSKDVSVPEEW---LKGNYDVFEISTEISHFISETMTEQGVFAVVATT 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + L+++D V DP N+G ++R+A A D +I + + + + +S Sbjct: 98 EPDMMLLYGKK---LLLVDAVQDPGNVGTLIRTADAAGYDAVILGRGSADLYNPKVIRST 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP I+ + + K L K D +ALI+G EGKG+ Sbjct: 155 QGSHFHIPVIQANLFDWIANLEEEGVPVIGAVLDAQAKSLNDISKRDTLALIVGNEGKGI 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q + ++ + G ++LNV+ AA + LY + Sbjct: 215 SEELQARLSEKVYIPIYGKSESLNVAVAAGILLYGLRK 252 >gi|154706093|ref|YP_001424432.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii Dugway 5J108-111] gi|164685717|ref|ZP_01945643.2| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii 'MSU Goat Q177'] gi|165918586|ref|ZP_02218672.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA 334] gi|212218447|ref|YP_002305234.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuK_Q154] gi|154355379|gb|ABS76841.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii Dugway 5J108-111] gi|164601225|gb|EAX33789.2| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii 'MSU Goat Q177'] gi|165917714|gb|EDR36318.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA 334] gi|212012709|gb|ACJ20089.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuK_Q154] Length = 270 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 119/240 (49%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107 +YG+H VSA L+ ++I +L +N RL V + ++ + + Sbjct: 27 IYGIHAVSAVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKGLGVKVILLSRTELNTLSNE 86 Query: 108 EAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+ + + + L LL++LD V DPHN+GA LRSA AF Sbjct: 87 K--HQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR 144 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K + + V+ K A GA E P+IR++NL+ + + G +G + +++ + Sbjct: 145 AVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLI 204 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ IA++LG+EG GLR T+E +A + + G +++LNVS A + LY Q Sbjct: 205 QEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQR 264 >gi|91775978|ref|YP_545734.1| RNA methyltransferase TrmH, group 3 [Methylobacillus flagellatus KT] gi|91709965|gb|ABE49893.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Methylobacillus flagellatus KT] Length = 251 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V + L + + ++L ++ A + V V +D + G Sbjct: 6 ILFGFHAVLSRLRQHAASVQEVLVDQDRVDARMKDLLQMAEGANVRVMHVERARLDGMAG 65 Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 A HQG+ P D + +VLD V DPHN+GA LR A A Sbjct: 66 GNARHQGVIARVVDTPIPYKDIHDILESDLKEPPFFLVLDGVEDPHNLGACLRVADAMGV 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K + +A + K A GA E +P+I ++NL L+++ G +G ++++ Sbjct: 126 HAVIAPKDRAAGLNATVRKVACGAAETVPFIAVTNLARTLRELKDAGVFIVGAAAEADAD 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L + +AL+LGAEG GLR TQET S+ + M G +++LNVS A+ + LY + Sbjct: 186 LPSTNLSGPLALVLGAEGSGLRRLTQETCDSLISIPMFGSVESLNVSVASGICLYEARRQ 245 Query: 280 FA 281 Sbjct: 246 RI 247 >gi|24375422|ref|NP_719465.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella oneidensis MR-1] gi|52783315|sp|Q8EAG8|RLMB_SHEON RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|24350263|gb|AAN56909.1|AE015825_8 RNA methyltransferase, TrmH family, group 3 [Shewanella oneidensis MR-1] Length = 246 Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 112/244 (45%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102 + ++G+H V A L + +I +L + RL ++ + +D Sbjct: 2 KKQDIIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKAFGTSIQVTSRKVLD 61 Query: 103 KIVGKEAVHQGLALETA------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ L A + L++LD V DPHN+GA LR+A A Sbjct: 62 EKA-ESTQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S +AV++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q +A+ +GAEGKGLR ++E ++ + M G + +LNVS A + L+ Sbjct: 181 DCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMSGSVSSLNVSVATGICLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|62289126|ref|YP_220919.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941] gi|62195258|gb|AAX73558.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str. 9-941] Length = 297 Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 85/255 (33%), Gaps = 4/255 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K ++S K + Q G+ V AL R + A + Sbjct: 35 NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93 Query: 87 ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V V + I I ++ + + + + + + LD V D Sbjct: 94 TRTFAKGGLVLEVTEKVISAITRRDNLQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRD 153 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A A G+I + S ++ G++ +P R S + Sbjct: 154 PGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + N I LI+G E +GL +A + G +L Sbjct: 214 FSGLVVGTHLKGAVDYRTIPYANKPIILIMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273 Query: 264 NVSNAAAVALYITQN 278 N++ A V LY + Sbjct: 274 NLAIATGVMLYEIRR 288 >gi|295694816|ref|YP_003588054.1| RNA methyltransferase, TrmH family, group 3 [Bacillus tusciae DSM 2912] gi|295410418|gb|ADG04910.1| RNA methyltransferase, TrmH family, group 3 [Bacillus tusciae DSM 2912] Length = 268 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 111/253 (43%), Gaps = 12/253 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKT 95 + R + + + G V L R + +L + A + Sbjct: 16 RRRVQGESQRRRVVGRQPVLELLRAG-RPVNRLFIAEGAEGGSMAEITARAKEAGIVIIR 74 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148 VP +D+ HQG+ + AP LD R L ++LD + DPHN+G Sbjct: 75 VPRNRLDEWAS-GVNHQGVMADVAPFAYADLDECLRAAKLHRRPGLFVLLDGIEDPHNLG 133 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +ILR+A A + DG++ KR + + + + K+++GA E +P IR+ NL + + G++ Sbjct: 134 SILRTAEACAVDGVVVPKRRAAAVNETVVKASAGAAEFVPVIRVGNLGQTILALKRSGYR 193 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +G ++ + AL++G EGKGL +E + H+ M G + +LN A Sbjct: 194 VVGADTEGECDYTDVDYRVPTALVIGGEGKGLGRLVRERCDEVVHIPMAGRVNSLNAGVA 253 Query: 269 AAVALYITQNHFA 281 A V LY + Sbjct: 254 AGVLLYEAIRQRS 266 >gi|317049748|ref|YP_004117396.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b] gi|316951365|gb|ADU70840.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. At-9b] Length = 244 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 111/242 (45%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + ++G+H V A L ++ ++ K R A V+ Q +D Sbjct: 2 SEIIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPLVAALEAQGIAVQLANRQWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ P + L + L++LD V DPHN+GA LRSA A Sbjct: 62 V-EGGVHQGIVARVKPGKNYQEGDLPDLLESIENPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E++P IR++NL ++ + + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEYQIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKLPAALALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|117919150|ref|YP_868342.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. ANA-3] gi|117611482|gb|ABK46936.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. ANA-3] Length = 246 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 111/244 (45%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102 + ++G+H V A L + +I +L + RL ++ + +D Sbjct: 2 KKQDIIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKAFGTSIQVTSRKVLD 61 Query: 103 KIVGKEAVHQGLALETA------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + A HQG+ L + L++LD V DPHN+GA LR+A A Sbjct: 62 DKA-ESAQHQGIVARVKAAKILGEHDLDELLGKTDLPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S +AV++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q +A+ +GAEGKGLR ++E ++ + M G + +LNVS A + L+ Sbjct: 181 DCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMAGSVSSLNVSVATGICLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|134094504|ref|YP_001099579.1| tRNA (guanosine-2'-O-)-methyltransferase [Herminiimonas arsenicoxydans] gi|133738407|emb|CAL61452.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Herminiimonas arsenicoxydans] Length = 247 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 114/238 (47%), Gaps = 7/238 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++G H V+A L + + + ++ + + A + + IVG Sbjct: 6 IFGFHAVTARLRHEASSVEEIYIDASRHDQRMKDLIRAAEAAKVRIIAADDARLSSIVGT 65 Query: 108 EAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 +A A L LDA+ LL+VLD + DPHN+GA LR A +I Sbjct: 66 RRHQGVVAKAGELSLARNLDELLDAIDGPPLLLVLDGITDPHNLGACLRVADGAGAHAVI 125 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + +A AK ASGA + +PYI ++NL L+++ IG + DS+K L + Sbjct: 126 APKDRAVGLNATAAKVASGAADTVPYITVTNLARTLRELKERDILLIGTTDDSEKGLYEA 185 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + ALI+G+EG+G+R T+ET + + M G +++LNVS A+ V LY + Sbjct: 186 DFSGPAALIMGSEGEGMRRLTRETCDVLVSIPMFGSVESLNVSVASGVCLYEARRQRI 243 >gi|113971595|ref|YP_735388.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. MR-4] gi|113886279|gb|ABI40331.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. MR-4] Length = 246 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 111/244 (45%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102 + ++G+H V A L + +I +L + RL ++ + +D Sbjct: 2 KKQDIIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKSFGTSIQVTSRKVLD 61 Query: 103 KIVGKEAVHQGLALETA------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ L A + L++LD V DPHN+GA LR+A A Sbjct: 62 DKA-ESTQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S +AV++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q +A+ +GAEGKGLR ++E ++ + M G + +LNVS A + L+ Sbjct: 181 DCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMAGSVSSLNVSVATGICLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|238764700|ref|ZP_04625644.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia kristensenii ATCC 33638] gi|238697096|gb|EEP89869.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia kristensenii ATCC 33638] Length = 246 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104 + +YG+H+V A L+N ++ ++ K R ++ Q +D Sbjct: 2 SEIIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVIQVASRQWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 V +A D + L+VLD V DPHN+GA LRSA A Sbjct: 62 VEGGVHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A+ K ASGA E++P I+++NL L+ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241 Query: 280 FA 281 A Sbjct: 242 RA 243 >gi|123440768|ref|YP_001004760.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087729|emb|CAL10514.1| putative methylase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 246 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104 + +YG+H+V A L+N ++ ++ K R ++ Q +D Sbjct: 2 SEIIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVIQVASRQWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 V +A D + L+VLD V DPHN+GA LRSA A Sbjct: 62 VEGGVHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A+ K ASGA E++P I+++NL L+ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241 Query: 280 FA 281 A Sbjct: 242 RA 243 >gi|167758883|ref|ZP_02431010.1| hypothetical protein CLOSCI_01228 [Clostridium scindens ATCC 35704] gi|167663623|gb|EDS07753.1| hypothetical protein CLOSCI_01228 [Clostridium scindens ATCC 35704] Length = 250 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 61/250 (24%), Positives = 107/250 (42%), Gaps = 9/250 (3%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + Q + G + V A + K+F L ++ R H ++ V Sbjct: 2 KEDKQINENIIEGRNAVLEAFRSGKPIDKLFVLDGCQDGPIRTIVREAKKHDTILQFVTK 61 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILR 152 + + +I +A A + D ++ L++LD++ DPHN+GAI+R Sbjct: 62 ERLSQISETGRHQGVIAYAAAYEYADVEDMLKLAESKGEDPFLILLDNIEDPHNLGAIIR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A G+I KR + +A +AK+++GAL + P +++NL ++ + G + Sbjct: 122 TANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMESLKEKGLWFVCA 181 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + I LI+G EG+G+ +ET A + M G I +LN S AA V Sbjct: 182 -DMGGEEMYDLNLTGPIGLIIGNEGEGVSRLVKETCDFTARIPMNGDIDSLNASVAAGVL 240 Query: 273 LYITQNHFAK 282 Y K Sbjct: 241 AYEIVRQRRK 250 >gi|16767615|ref|NP_463230.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56416160|ref|YP_153235.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182815|ref|YP_219232.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161617640|ref|YP_001591605.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167994986|ref|ZP_02576076.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231407|ref|ZP_02656465.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239664|ref|ZP_02664722.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168245157|ref|ZP_02670089.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168822505|ref|ZP_02834505.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444737|ref|YP_002043624.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449058|ref|YP_002048412.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469123|ref|ZP_03075107.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734163|ref|YP_002117310.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197263055|ref|ZP_03163129.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197365085|ref|YP_002144722.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|204927331|ref|ZP_03218533.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213428664|ref|ZP_03361414.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582911|ref|ZP_03364737.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213852966|ref|ZP_03382498.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224586209|ref|YP_002640008.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910527|ref|ZP_04654364.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289829973|ref|ZP_06547424.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|52783321|sp|Q8ZKA2|RLMB_SALTY RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|16422930|gb|AAL23189.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56130417|gb|AAV79923.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130448|gb|AAX68151.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161367004|gb|ABX70772.1| hypothetical protein SPAB_05503 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403400|gb|ACF63622.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407362|gb|ACF67581.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455487|gb|EDX44326.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709665|gb|ACF88886.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197096562|emb|CAR62172.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197241310|gb|EDY23930.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197287651|gb|EDY27042.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204323996|gb|EDZ09191.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205327237|gb|EDZ14001.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334208|gb|EDZ20972.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336077|gb|EDZ22841.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341078|gb|EDZ27842.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224470737|gb|ACN48567.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249459|emb|CBG27324.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996701|gb|ACY91586.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160857|emb|CBW20388.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915467|dbj|BAJ39441.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088796|emb|CBY98554.1| hypothetical tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222665|gb|EFX47737.1| 23S rRNA guanosine-2'-O- -methyltransferase rlmB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615531|gb|EFY12451.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618591|gb|EFY15480.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322621996|gb|EFY18846.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627720|gb|EFY24511.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631027|gb|EFY27791.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637754|gb|EFY34455.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642418|gb|EFY39022.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644013|gb|EFY40561.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650481|gb|EFY46889.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653555|gb|EFY49883.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659740|gb|EFY55983.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662049|gb|EFY58265.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666202|gb|EFY62380.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672622|gb|EFY68733.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676052|gb|EFY72123.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680536|gb|EFY76574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684570|gb|EFY80574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322717317|gb|EFZ08888.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132707|gb|ADX20137.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192885|gb|EFZ78111.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197239|gb|EFZ82379.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201644|gb|EFZ86708.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206158|gb|EFZ91120.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213166|gb|EFZ97968.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215540|gb|EGA00284.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219525|gb|EGA04010.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227828|gb|EGA11982.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228998|gb|EGA13127.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236390|gb|EGA20466.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238705|gb|EGA22757.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241844|gb|EGA25873.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248007|gb|EGA31944.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254662|gb|EGA38473.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258279|gb|EGA41956.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263575|gb|EGA47096.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265829|gb|EGA49325.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270273|gb|EGA53721.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332991180|gb|AEF10163.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 243 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P L A+ + L++LD V DPHN+GA LRSA A Sbjct: 62 SD-GAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 Sbjct: 241 QRT 243 >gi|312876807|ref|ZP_07736785.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor lactoaceticus 6A] gi|311796426|gb|EFR12777.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor lactoaceticus 6A] Length = 253 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 103/242 (42%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL + + KI ++ + +A R + VK V IDK+ + Sbjct: 4 IEGKNPVKEALRSGA-KITEVYISNSAKDRETAQIINLCKQSGIVVKFVDKSKIDKMA-Q 61 Query: 108 EAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+ +D + L++LD + DP N G+I+RSA Sbjct: 62 TKNPQGVIAIAHEFEYCDIDDILAEARQRGETPFLVLLDGITDPQNFGSIIRSAHLCGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ R S + + K+++GA+E++ R+ NL ++++ G + KP+ Sbjct: 122 GIVIEARNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFATDASGPKPV 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G+EGKG+ +E A + + G + + N S AA + + Sbjct: 182 YECDFTIPTCIVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQR 241 Query: 281 AK 282 K Sbjct: 242 LK 243 >gi|160932770|ref|ZP_02080159.1| hypothetical protein CLOLEP_01611 [Clostridium leptum DSM 753] gi|156867844|gb|EDO61216.1| hypothetical protein CLOLEP_01611 [Clostridium leptum DSM 753] Length = 255 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 13/249 (5%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPP 98 ++P + G + V AL +R I +L + A D VK V P Sbjct: 4 KRTEPAQDVIAGRNAVKEAL-CSARPIESILVARGARNGSLGDIVSKAKAQGVAVKEVDP 62 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151 + ++ + A HQG+ A +++ + L+V D +NDPHN+GAIL Sbjct: 63 KRLEFLC-PGANHQGIVALAAAHEYASVEDMLALADERGEPPFLIVADELNDPHNLGAIL 121 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A G+I KR S + + K+++GALE++P R+SNL A + I Sbjct: 122 RTAECTGAHGVIIPKRRSAGLTYTVGKASAGALEYVPVARVSNL-AAALEDLKKRGLWIY 180 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + P + AL++G+EG G+ +E + L M G I +LN S AA V Sbjct: 181 GADMEGTPWCEAELTGPAALVIGSEGAGIGRLVKEKCDVILSLPMRGKINSLNASVAAGV 240 Query: 272 ALYITQNHF 280 +Y Sbjct: 241 LMYEFMRQR 249 >gi|86143085|ref|ZP_01061507.1| putative rRNA methylase [Leeuwenhoekiella blandensis MED217] gi|85830530|gb|EAQ48989.1| putative rRNA methylase [Leeuwenhoekiella blandensis MED217] Length = 268 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 97/257 (37%), Gaps = 3/257 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDW 83 + K++ + +KSR + + GV ++ AL+ + L +A Sbjct: 9 QNPTVKQLVALQEKSRIRRKTGEFLIEGVREINLALDAGFQLTQLLFCSAIADAEELAAL 68 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + L V + KI + +A A + + + + L+MV + Sbjct: 69 QSKLSAEVTQIEVTEEVYKKIAYRSGTEGIIASAKAKKNTLSALDLPKNPLIMVAEAPEK 128 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P NIGA+LR+A A D I + + + +S+ G L +P S + + + Sbjct: 129 PGNIGALLRTADAAGVDAFILANPRTDLYNPNIIRSSVGGLFTVPVATGSTQ-EVIDFLK 187 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 E++ AL++G E GL + A + M G + ++ Sbjct: 188 QKNIAIYTAILQEAISYEKQDFTTASALVVGTEADGLSEAWRAAAKQNIIIPMQGRLDSM 247 Query: 264 NVSNAAAVALYITQNHF 280 NVS AAA+ ++ + Sbjct: 248 NVSVAAAILIFEARRQR 264 >gi|238757527|ref|ZP_04618712.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia aldovae ATCC 35236] gi|238704289|gb|EEP96821.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia aldovae ATCC 35236] Length = 246 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKI 104 + +YG+H++ A L+N ++ ++ K R ++ + +D Sbjct: 2 SEIIYGIHSIKALLDNDPQRFLEVFILKGRDDRRLQSLIVELEATGLVIQVASRKWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 V A +A D + L+VLD V DPHN+GA LRSA A Sbjct: 62 VEDGAHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A+ K ASGA E++P I+++NL L+ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEVVRQ 241 Query: 280 FA 281 A Sbjct: 242 RA 243 >gi|312144265|ref|YP_003995711.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium sp. 'sapolanicus'] gi|311904916|gb|ADQ15357.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium sp. 'sapolanicus'] Length = 246 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 115/242 (47%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL RKI ++ +N+ + + D P+ + + + + + Sbjct: 4 IEGRNAVYEALRAG-RKIHRIYIKENSSSEIIDDILEMAEKDNIPITRISNKKLSE-TAR 61 Query: 108 EAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ E L + D L ++LD + DPHN GAI+R+A A D Sbjct: 62 SHAHQGIIAEADHLKEYNINDIINIKDEKPGDSLTIILDEIKDPHNFGAIIRTAYAAGAD 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ R + + V+ K+A+GA EHIP +++SN+ A++ + F +G + ++ Sbjct: 122 AVVYQDRRAVDITPVVLKAAAGAAEHIPLVKVSNINYAIKALKDAHFWVVGADAAGEQSH 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + AL++G+EG GLR +E + + M G + +LN S AAAV +Y Sbjct: 182 FEADFSGSTALVIGSEGSGLRRLVRENCDFLVKIPMKGELGSLNASVAAAVIIYEIFRQE 241 Query: 281 AK 282 K Sbjct: 242 EK 243 >gi|325144276|gb|EGC66581.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M01-240013] Length = 250 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H V+A L + I +L + + R + V ++ I K Sbjct: 7 IYGFHAVNARLWQNPKSIVELYVQEGKNDVRTREVLEKAANENIRVYFADADRLNAIS-K 65 Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+ L L+ + LL++LD + DPHN+GA LR+A A + Sbjct: 66 GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A ++K ASGA E +PYI ++NL L+++ +G IG + L Sbjct: 126 IAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|283786859|ref|YP_003366724.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter rodentium ICC168] gi|282950313|emb|CBG89960.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter rodentium ICC168] Length = 243 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRK---IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + +F L ++ A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQDVFILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P L A L++LD V DPHN+GA LRSA A Sbjct: 62 S-EGAVHQGIIARVKPGRQYQENDLPDLIASLEQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|42519503|ref|NP_965433.1| hypothetical protein LJ1627 [Lactobacillus johnsonii NCC 533] gi|41583791|gb|AAS09399.1| hypothetical protein LJ_1627 [Lactobacillus johnsonii NCC 533] gi|329667742|gb|AEB93690.1| rRNA methylase [Lactobacillus johnsonii DPC 6026] Length = 253 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 104/251 (41%), Gaps = 6/251 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K ++ QK ++ + + + G H V AL + ++ L T AL +LD Sbjct: 8 NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEEALKSHENYLYVL-GTAEALKKLDTTY 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 L ++ I + + Q + + + +++ D++ DP Sbjct: 66 KLKDNKVIQITDA--IAQHLSSTKNSQDIFMVLPINQPKSFSFEYGKWVVL--DNLTDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A DG++ ++ + + +S G+ HI I+ L + Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIIQNPILEAISSFKENG 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + + K L ++AL++G E G + ETA ++ + G ++LN Sbjct: 182 LPVYVSILDKTAKSLNNCAPVPQLALVIGNEAHGASKEVIETADKKIYIPIKGKAESLNA 241 Query: 266 SNAAAVALYIT 276 + AA + +Y Sbjct: 242 AVAAGIMIYHF 252 >gi|167553783|ref|ZP_02347529.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168263278|ref|ZP_02685251.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464747|ref|ZP_02698650.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|198243348|ref|YP_002218253.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205355126|ref|YP_002228927.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859514|ref|YP_002246165.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|195632589|gb|EDX51043.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197937864|gb|ACH75197.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274907|emb|CAR39974.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205321857|gb|EDZ09696.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205348047|gb|EDZ34678.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206711317|emb|CAR35695.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326626058|gb|EGE32403.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630284|gb|EGE36627.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 243 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P L A+ L++LD V DPHN+GA LRSA A Sbjct: 62 SD-GAVHQGIIARVKPGRQYQENDLPDLIALHERPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 Sbjct: 241 QRT 243 >gi|331650305|ref|ZP_08351377.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M605] gi|330908522|gb|EGH37041.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Escherichia coli AA86] gi|331040699|gb|EGI12857.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M605] Length = 243 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERTPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L++LD V DPHN+GA LRSA A Sbjct: 62 SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|295696878|ref|YP_003590116.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus tusciae DSM 2912] gi|295412480|gb|ADG06972.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus tusciae DSM 2912] Length = 271 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 99/261 (37%), Gaps = 8/261 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K+ + + + + G H V AL++ L ++ + Sbjct: 10 QNARVKEWAALRR-GKERRRRGTFLAEGPHLVGEALHSGLGIEVVLFDPRDQTPEVASLV 68 Query: 86 NLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLD 139 PV+ V + ++++ A+ P + L++ LD Sbjct: 69 EEARGKGCPVQPVDRRVLERVCEVITPQGIAAVVRIPERPMPGFAVEAPEEDPVLMVALD 128 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N+GA+LR A A G++ + + S +S+ GA +P + + Sbjct: 129 GIQDPGNVGAVLRVARAVGVTGVLCGEDTADPFSPKAVRSSMGAAFTVPIRQGRLVNMIG 188 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + + + N + ++LG EG+G+ P+ + H+ MPG Sbjct: 189 EWHAKGVEPVETAVGEGVRYDRWN-WNIPVMIVLGNEGRGISPEVRHLCRGKVHIPMPGG 247 Query: 260 IKALNVSNAAAVALYITQNHF 280 ++LNV+ AAA+ LY + H Sbjct: 248 GESLNVAVAAALLLYEARRHR 268 >gi|114046193|ref|YP_736743.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. MR-7] gi|113887635|gb|ABI41686.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. MR-7] Length = 246 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 112/244 (45%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102 + ++G+H V A L + +I +L + RL ++ + +D Sbjct: 2 KKQDIIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKSFGTSIQVTSRKVLD 61 Query: 103 KIVGKEAVHQGLALETA------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ L A + L++LD V DPHN+GA LR+A A Sbjct: 62 DKA-ESSQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S +AV++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVQGIIVPKDNSVGVTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q +A+ +GAEGKGLR ++E ++ + M G + +LNVS A + L+ Sbjct: 181 DCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMAGSVSSLNVSVATGICLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|319404391|emb|CBI77994.1| tRNA/rRNA metyltransferase [Bartonella rochalimae ATCC BAA-1498] Length = 272 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 136/269 (50%), Positives = 180/269 (66%), Gaps = 5/269 (1%) Query: 16 KDSHYAKLRRNHRDYK----KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 KDSHYA+LRR +RD K + ++ ++ Q E ++LYG+H V AAL NP R + L Sbjct: 3 KDSHYARLRRRYRDTKGSFFQSTTYVKQPPIPLQKEQIYLYGIHPVHAALKNPRRILRHL 62 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131 T NAL RLD + + P+ P+ ++ VG+EAVHQG+ LET PL S +L + N Sbjct: 63 YTTPNALKRLDINESNIA-CPITPCSPKKLEMFVGREAVHQGIVLETEPLKSRSLSELTN 121 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + L++++D + DPHN+GAI+RSAVAF IITT R+SP ES VLAK+ASGALE I YI Sbjct: 122 TDLIIIMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEYIT 181 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + NL ALQ++H F + GL S+ K PLE + KI+LILGAEGKGLR KT+E S+ Sbjct: 182 VRNLFKALQELHQMNFISFGLDSEGKFPLETALTGTKISLILGAEGKGLRQKTRENVYSL 241 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 A L +PG IK+LNVSNAAA+ALY + Sbjct: 242 ARLDLPGDIKSLNVSNAAAIALYAVHKYL 270 >gi|312126945|ref|YP_003991819.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor hydrothermalis 108] gi|311776964|gb|ADQ06450.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor hydrothermalis 108] Length = 253 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 105/242 (43%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL + + KI ++ + +A + D VK V IDK+ + Sbjct: 4 IEGKNPVKEALKSGA-KITEVYISNSAKDKETAQIIDLCRQSGVVVKFVDKSKIDKMA-Q 61 Query: 108 EAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+ +D + + L++LD + DP N G+I+RSA Sbjct: 62 TKNPQGVIAIAHEFEYCDIDDILFEARQKKEAPFLVLLDGITDPQNFGSIIRSAHLCGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ R S + + K+++GA+E++ R+ NL ++++ G + S KP+ Sbjct: 122 GIVIEARNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFAADASSPKPV 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G+EGKG+ +E A + + G + + N S AA + + Sbjct: 182 YECDFTIPTCIVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQR 241 Query: 281 AK 282 K Sbjct: 242 LK 243 >gi|307824282|ref|ZP_07654508.1| RNA methyltransferase, TrmH family, group 3 [Methylobacter tundripaludum SV96] gi|307734662|gb|EFO05513.1| RNA methyltransferase, TrmH family, group 3 [Methylobacter tundripaludum SV96] Length = 248 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGK 107 +YG+H+V +AL+ +KI + + L + V + +D+ + Sbjct: 6 IYGIHSVQSALDYSPKKIGKAWIDSQRQDKRLTQLIDDLLDLGIEPEKVDRKKLDRFA-E 64 Query: 108 EAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ +E + +++ + L +VLD+V DPHN GA LR+A A Sbjct: 65 GNNHQGIVIEVEMPGELSESDLKDAVLTLSGTPLFLVLDNVQDPHNFGACLRTADATGVH 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I TK + + + K ASGA E +P +++NL+ L+ + G +G + ++ + Sbjct: 125 GVIITKDNATGITPTVCKVASGAAETVPVYQVTNLSRTLRWLKEQGIWVMGAAGEATQTA 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEGKGLR T+E + L M G +++LN+S A V LY T Sbjct: 185 YQTDFTVPLALVVGAEGKGLRRLTKEQCDILVKLPMRGQVESLNLSVATGVLLYETVRQR 244 >gi|307243416|ref|ZP_07525573.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus stomatis DSM 17678] gi|306493226|gb|EFM65222.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus stomatis DSM 17678] Length = 244 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 105/241 (43%), Gaps = 11/241 (4%) Query: 50 FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + + AL N KI A+K + + ++ V +D++ Sbjct: 3 IIEGRNPIIEALKNNRSIEKIMVNKASKEGSIKKILAMAKENKVIIQEVDRHKLDEMSES 62 Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A HQG+ T+ LD ++LD + DPHN+G+I+R+A A Sbjct: 63 HA-HQGVIAITSDYRYYDLDEILEIPKERGEDPFFIILDGITDPHNLGSIIRTADAVGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I KR S + ++AK+++GA+E++P +++N+ + ++ + G Sbjct: 122 AVIIPKRRSVQITPIVAKASAGAVEYLPVCKVTNIVNTIKTLKENGLWIA-AVDMDGHTF 180 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ + L++G+EG+G+ ++ + M G + +LN S A + LY Sbjct: 181 YQQNLGGPLGLVVGSEGEGISRLVKQNCDFTVSMPMSGNVTSLNASVAGGILLYEVYRQR 240 Query: 281 A 281 Sbjct: 241 N 241 >gi|296875965|ref|ZP_06900024.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 15912] gi|296433040|gb|EFH18828.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 15912] Length = 248 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 61/278 (21%), Positives = 115/278 (41%), Gaps = 31/278 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + I + K H K R + + + G H A Sbjct: 1 MNIITSKSNNVIKNAKKLHQKKYRTD---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + N + I Q+ + L R++ N V V + + + + + Sbjct: 40 VENQAE-IRQVFVLEAYLDRVENIQN------VTVVTSEILSLLADSKTPQGIV---AEI 89 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 LL + + + L+ V DP N+G ++R+A A DG++ +K + S +S Sbjct: 90 LLEQPVLPYQLQGRYLYLEDVQDPGNVGTMIRTADAAGFDGVMLSKASADLYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P ++ + S S++ Q + D++ L++G EGKG+ Sbjct: 150 QGSHFHLPIWKLDREELFERASQSNLAVLATTLSEASIDYRQLPQIDQLILVMGNEGKGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+ A + H+ MPG ++LNV+ AA + ++ +N Sbjct: 210 SPEMATRADQLVHITMPGRAESLNVAVAAGILMFYLRN 247 >gi|257879805|ref|ZP_05659458.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933] gi|257882531|ref|ZP_05662184.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502] gi|257891646|ref|ZP_05671299.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410] gi|257894123|ref|ZP_05673776.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408] gi|257814033|gb|EEV42791.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933] gi|257818189|gb|EEV45517.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502] gi|257828006|gb|EEV54632.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410] gi|257830502|gb|EEV57109.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408] Length = 289 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 76/288 (26%), Positives = 134/288 (46%), Gaps = 10/288 (3%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M + K+++ K S + K R + ++ + ++ E+ F++G H A Sbjct: 1 MKKMGKERTNKHQSKRGFEDKKQNRYSNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEA 60 Query: 61 LNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L K+F ++ + PVK VP Q ++ + VHQG+ L Sbjct: 61 LQQGRGNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETLSDH-GVHQGVVLAIT 119 Query: 120 PLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 P +LD + ++LD + DPHN G+ILR+A A DG+I K + Sbjct: 120 PYEYLSLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGI 179 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + ++ K+++GA+EH+P R++NL A+Q++ GF G + K IAL+ Sbjct: 180 TPIVTKTSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTGTNFQKWNAK-GSIALV 238 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +G EGKG+ P ++ + + M G +++LN S AA + +Y + Sbjct: 239 IGNEGKGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 286 >gi|94968032|ref|YP_590080.1| RNA methyltransferase TrmH, group 3 [Candidatus Koribacter versatilis Ellin345] gi|94550082|gb|ABF40006.1| RNA methyltransferase TrmH, group 3 [Candidatus Koribacter versatilis Ellin345] Length = 261 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 112/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104 +YG+H VS AL + R + K+ + V+ +P +D+ Sbjct: 1 MDVIYGIHPVSEALKSRGRSFQYVAIAKDRMDPRVQRIVEDARESGITVRFLPRDFLDR- 59 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +HQG+ T+ LD ++VLD + DPHN+GA++RSA Sbjct: 60 TANTNMHQGVIAVTSKKEYLDLDDIIEKKRGEHAFVVVLDGIEDPHNLGALIRSADGAGV 119 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKK 218 DG++ +R + + K+++GA E++P R++N+ +++ + T+GL + Sbjct: 120 DGVVIPERRAVGVTGTAMKASAGAAEYVPIARVTNIARSIEDLKDKYNVWTVGLDERGTQ 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ N +AL+LGAEGKGL ++ + + M G + +LNVS A + +Y Sbjct: 180 NYDEIDYNMSLALVLGAEGKGLHDLVRKKCDLLVKIPMAGEVSSLNVSVAGGIVMYEVSR 239 Query: 279 HF 280 Sbjct: 240 QR 241 >gi|86605012|ref|YP_473775.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab] gi|86553554|gb|ABC98512.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp. JA-3-3Ab] Length = 354 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 70/256 (27%), Positives = 115/256 (44%), Gaps = 11/256 (4%) Query: 36 FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFP 92 ++PE +YG TV AAL + + + + + + Sbjct: 82 LQVNRDPEAEPEQEIIYGRQTVLAALRSQATLNRVWVLPRLRYSPQFWSLLEEAKARGTV 141 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145 + V Q ++ + A HQG+A + P L+ +L+VLD + DPH Sbjct: 142 IDEVSLQRLNLLTA-GANHQGIAAQATPYRYVDLEELVEQSRQSGPHPVLVVLDGIQDPH 200 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI RS AF G++ +R + +A + K A+GAL +P R+ NL AL+ + Sbjct: 201 NLGAIARSVEAFGMQGMVIPQRRAAGVTATVMKVAAGALSTLPVARVVNLNRALEYLKGQ 260 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF G +S P+ IAL++G+EG+G+ TQ + + + G ++LN Sbjct: 261 GFWVYGTTSQGAAPIYSADFRRPIALVVGSEGEGISLLTQRHCDQLLSIPLAGRTESLNA 320 Query: 266 SNAAAVALYITQNHFA 281 S AA +ALY + Sbjct: 321 SVAAGIALYEIHRQRS 336 >gi|300721497|ref|YP_003710772.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297627989|emb|CBJ88538.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] Length = 245 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ ++ K R + V+ Q +D Sbjct: 2 SEIIYGIHAVKALLESDPQRFMEVYVLKGREDRRLTPLFQELESIGITVQLANRQWLDAQ 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P L + + L+VLD V DPHN+GA LR+A A Sbjct: 62 T-EGAVHQGIIARVKPGRQYQENDLPDLLSQLDRPFLLVLDGVTDPHNLGACLRTADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D +I + S +A K A GA E++P IR++NL L+ + +G + ++ Sbjct: 121 VDAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEHNIWIVGTAGEATH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L + +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 ALYESKLTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEIVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|294671054|ref|ZP_06735909.1| hypothetical protein NEIELOOT_02762 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307162|gb|EFE48405.1| hypothetical protein NEIELOOT_02762 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 249 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V+ L + I +L + +A R + V ++ I Sbjct: 6 LIYGFHAVNTRLWQNPKSITELYVQEGKNDARTRDVLEKAANENVRVHFADADRLNAIS- 64 Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L L+ + LL++LD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + +A ++K A GA E +PYI ++NL L+++ +G IG L Sbjct: 125 VIAPKDKNAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDSDLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D A ++G EG+G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243 >gi|218247732|ref|YP_002373103.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 8801] gi|218168210|gb|ACK66947.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8801] Length = 260 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 104/255 (40%), Gaps = 4/255 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDA 85 + K+++ + +++ + L G H + A N S A + W+ Sbjct: 7 NPLVKQIRQLH-RTKGRREQNLLLFEGTHLLETACEVNCSLDCLCYTAQWQSRYPQLWEL 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 ++ V P+ + + +A + + + ++ ++L+ + DP Sbjct: 66 ATQKAQRIELVSPEVLQALATTVNPDGVIATAV--NPKISKPTIADFKIGLILERLQDPG 123 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+AVA DGI + ++ + +S++GA H+P I +L+ ++ + Sbjct: 124 NLGTIIRTAVATEIDGIWLSSDSVDIDNPKVLRSSAGAWFHVPLIVSCDLSATIKHYQAS 183 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G Q I + ++LG EG GL + A + + I++LNV Sbjct: 184 GVQVIATLPTATNTYWDVDLTQPSLILLGNEGAGLSEELASLADQTVSIPLGNTIESLNV 243 Query: 266 SNAAAVALYITQNHF 280 + A A+ LY Q Sbjct: 244 AIACALLLYERQRQI 258 >gi|317472693|ref|ZP_07932008.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA] gi|316899870|gb|EFV21869.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA] Length = 246 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 106/243 (43%), Gaps = 12/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E L G + V AL KI+ L ++ R + V + +D++ Sbjct: 4 EEYLLAGRNAVLEALRAGKPIDKIYILDGCQDGPVRTIVREAKKTDAVLNFVEKERLDQL 63 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ A ++ + ++LD + DPHN+GAI+R+A Sbjct: 64 TKEH--HQGVVAMAAAYEYGQMEDLFARAEEKKEDPFFILLDGIEDPHNLGAIIRTANLA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR + + +AK+++GAL + P ++++NL++ ++++ G + Sbjct: 122 GAHGVIIPKRRAVGLTPTVAKTSAGALNYTPVVKVTNLSNTMEELKERGLWFVCA-DMDG 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + ++ I L++G EG G+ +E A + M G I +LN S AA V Y Sbjct: 181 DMMYRQNLTGPIGLVIGNEGSGVSRLVKERCDYTASIPMNGDIDSLNASVAAGVLAYEIV 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|113475949|ref|YP_722010.1| RNA methyltransferase [Trichodesmium erythraeum IMS101] gi|110166997|gb|ABG51537.1| RNA methyltransferase, TrmH family, group 3 [Trichodesmium erythraeum IMS101] Length = 288 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 71/290 (24%), Positives = 129/290 (44%), Gaps = 27/290 (9%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHT-----SQPENLFLYGVHTVSAA 60 K+ K S + K++Q + +S+ + + +YG HTV AA Sbjct: 2 STKNYKFNSQEKPQ---------KNKQIQLKDGRSKKYYSPTVKEEDEDLIYGRHTVQAA 52 Query: 61 LNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 L + R + ++ + + + + V + +D+I + HQG+ Sbjct: 53 LKS-ERYLNRIWIISSLRYDPRFHILLNEAKTKGTIIDEVDDRRLDQIT-RRKHHQGIVA 110 Query: 117 ETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 + P L + +L+V D +NDPHN+GAI+R+ A G++ +R + Sbjct: 111 QICPYEYKELHELISQAKSKTDRSVLLVADGINDPHNLGAIIRTGEALGIQGLVIPQRRA 170 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 ++ + K A+GALE+ P R+ NL AL+++ GF G + +P+ I Sbjct: 171 VGITSTVTKVAAGALENFPVARVINLNSALEELKKEGFWIYGTVAKDGEPIHTVKFTGAI 230 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L++G+EG+GL Q+ ++ + M G +LNVS A +A+Y Sbjct: 231 VLVVGSEGEGLSLLIQKNCDALVSIPMSGSTPSLNVSVATGMAIYEIHRQ 280 >gi|291550111|emb|CBL26373.1| rRNA methylase, putative, group 3 [Ruminococcus torques L2-14] Length = 254 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 109/249 (43%), Gaps = 11/249 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 E + G + V A + KI+ L ++ R H + V + Sbjct: 5 REQGTETFVIEGRNAVLEAFRSGRTIDKIYVLDGCQDGPVRTIVREAKKHGSLINFVTKE 64 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152 + ++ + HQG+ A T+D + + L++LD++ DPHN+GAI+R Sbjct: 65 RLSQLS-ETGKHQGVIAHAAAYEYSTIDDMLKLAEERGEAPFLILLDNIEDPHNLGAIIR 123 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A G+I KR + +A +AK+++GAL + P +++NL ++++ G + Sbjct: 124 TANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLVKTMEELKEKGLWFVCA 183 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + I L++G EG+G+ +E +A + M G I +LN S AA V Sbjct: 184 -DMDGEQMYDLNLTGPIGLVIGNEGEGVGRLVKENCDFVAGIPMKGQINSLNASVAAGVL 242 Query: 273 LYITQNHFA 281 Y Sbjct: 243 AYEIVRQRI 251 >gi|242238241|ref|YP_002986422.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Dickeya dadantii Ech703] gi|242130298|gb|ACS84600.1| RNA methyltransferase, TrmH family, group 3 [Dickeya dadantii Ech703] Length = 244 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 104/241 (43%), Gaps = 8/241 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R VK Q +D+ Sbjct: 2 SEIIYGIHAVKALLERDPQRFLEVFTLKGREDRRLLPLIAELEATGIAVKVANRQWLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D R++ L+VLD V DPHN+GA LRSA A Sbjct: 62 AEGAVHQGIIARVREGRQYQENDLPGLLETRDTPFLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A K A GA E +P IR++NL L+ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRFLQERNVWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241 Query: 280 F 280 Sbjct: 242 R 242 >gi|197251745|ref|YP_002149283.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215448|gb|ACH52845.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 243 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P L A+ + L++LD V DPHN+GA LRSA A Sbjct: 62 SD-GAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLREENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 Sbjct: 241 QRT 243 >gi|77456761|ref|YP_346266.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens Pf0-1] gi|77380764|gb|ABA72277.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 255 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 76/238 (31%), Positives = 118/238 (49%), Gaps = 8/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ Q+ ++ R+ L + V+ + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKQIWLAESRNDPRVQTLIELANENRVQIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P LD + LL+VLD V DPHN+GA LRSA A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + V+ K A GA E IP + ++NL L+K+ G +G + +++ + Sbjct: 127 IVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWIVGTAGEAEVSIYD 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + LI+GAEGKG+R T+E + HL M G + +LNVS A V L+ Q Sbjct: 187 QDLTGPTILIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEAQRQR 244 >gi|308188261|ref|YP_003932392.1| hypothetical tRNA/rRNA methyltransferase [Pantoea vagans C9-1] gi|308058771|gb|ADO10943.1| hypothetical tRNA/rRNA methyltransferase [Pantoea vagans C9-1] Length = 244 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + ++G+H V A L ++ ++ K R A ++ + +D Sbjct: 2 SEIIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPVVAALETQGIVIQLAERKWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ P L L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGGVHQGIVARVKPGRQYQEGDLPDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S +A K ASGA E++P IR++NL L+ + + +G + ++ Sbjct: 121 VHAIIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TVFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 Sbjct: 241 QRN 243 >gi|126656411|ref|ZP_01727672.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110] gi|126622097|gb|EAZ92804.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110] Length = 261 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 105/255 (41%), Gaps = 4/255 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K+++ + +++ + L L G H V A + + Sbjct: 6 RNPLIKQIRKLH-RTKGRREQNLLLLEGTHLVETAYQEGCSLMTLCYTEQWRDRYPQLWE 64 Query: 86 NLPHPFPVKT-VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 N+ V + + I V+ + TA T + + + QL +V++ + DP Sbjct: 65 NVSKRVKRSELVSIEVLSNIT--TTVNPDGVVATALFQPRTEEEITDFQLGLVIERLQDP 122 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G I+R+A A D I + ++ + ++++G+ +P S+LT ++K + Sbjct: 123 GNLGTIIRTAAATEIDAIWLSDDSVDIDNPKVLRASAGSWFQVPIFVTSDLTTVIKKSKN 182 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G I D+ + Q ++LG EG GL A ++ + + +++LN Sbjct: 183 KGINIIATLPDATQSYWQLSFTKPTLILLGNEGSGLSNSLISLADNLVSIPLGPGVESLN 242 Query: 265 VSNAAAVALYITQNH 279 V+ A A+ LY + Sbjct: 243 VAIATALLLYEAKRQ 257 >gi|34496604|ref|NP_900819.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472] gi|52783300|sp|Q7NYX3|RLMB_CHRVO RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|34102459|gb|AAQ58824.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC 12472] Length = 248 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 114/238 (47%), Gaps = 7/238 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G H ++A L + + ++ +A A+ D + V + +D + G Sbjct: 6 LIHGFHAINARLWQNPKSLIEIWLAGGRHDARAKAVLDKAGAENVKLHIVDKERLDSMSG 65 Query: 107 KEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A+ A + LD V LL++LD V DPHN+GA LR A A + Sbjct: 66 NARHQGVVAMIDASMNYVDLDDVLENLSEPPLLLILDGVTDPHNLGACLRVADAMGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + +A ++K A GA E +PYI ++NL L+ + G G + ++ L Sbjct: 126 IAPKDRSATLNATVSKVACGAAEVVPYITVTNLARTLRDLKDAGVWIAGTTMEADTDLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A ++GAEG+G+R T+E + + M G +++LNVS ++ + L ++ Sbjct: 186 FDASGPLAWVMGAEGEGMRRLTREHCDVLVSIPMFGTVESLNVSVSSGMVLSESRRQR 243 >gi|261342841|ref|ZP_05970699.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cancerogenus ATCC 35316] gi|288314883|gb|EFC53821.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cancerogenus ATCC 35316] Length = 243 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLMPLIHALEAQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D ++ ++LD V DPHN+GA LRSA A Sbjct: 62 SEGAVHQGIIARVKPGRQYQENDLPDLIAGLDNPFFLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|22298586|ref|NP_681833.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus BP-1] gi|22294766|dbj|BAC08595.1| tll1042 [Thermosynechococcus elongatus BP-1] Length = 295 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 68/278 (24%), Positives = 128/278 (46%), Gaps = 22/278 (7%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPEN----------LFLYGVHTVSAALNNPSRKIFQLLA 73 ++N K+ +++ + LYG H V +AL + R ++ Sbjct: 9 KKNRPPAKRPPRLQRRTPAQPLQKAPPTAPAADAPELLYGRHAVLSALESG-RPCNRIWV 67 Query: 74 TK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128 + + + TV P+ +D++ + HQG+A++ A +L+ Sbjct: 68 IPSLRYDPRFHQRLNEAKQQGAIIDTVTPERLDQLC-QRGRHQGIAIQVAAYNYWSLEDL 126 Query: 129 -----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 N +L+ D + DP N+GA++R+A A G+I +R + +A +AK+A+GA Sbjct: 127 LAKAATVNQPVLLAADGITDPQNLGAMIRTAEALGMQGVIIPQRRAVGITATVAKAAAGA 186 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 LE++P R+ NL AL+ + + G+ GLS PL + + ++G+EG+G+ + Sbjct: 187 LEYLPVARVINLNQALETLKAAGYWIYGLSEHGAVPLPKITFDRPTVFVVGSEGEGISLQ 246 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 TQ+ + + + G +LN S A +ALY + Sbjct: 247 TQKHCDEIVAIPLAGRTNSLNASVAVGIALYEINCQRS 284 >gi|224824690|ref|ZP_03697797.1| RNA methyltransferase, TrmH family, group 3 [Lutiella nitroferrum 2002] gi|224603183|gb|EEG09359.1| RNA methyltransferase, TrmH family, group 3 [Lutiella nitroferrum 2002] Length = 251 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 113/238 (47%), Gaps = 7/238 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G H V+A L + + ++ ++A A+ D + V +D + G Sbjct: 6 LIHGFHAVNARLWQNPKSLLEIWLAGGRQDARAQAVLDKAAAENIKLHIVDKARLDSMSG 65 Query: 107 KEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A+ A +LD V LL++LD V DPHN+GA LR A A + Sbjct: 66 NARHQGVVAMIDASRSYVSLDDVLENLSEPPLLLILDGVTDPHNLGACLRVADAMGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + +A ++K A GA E +PYI ++NL L+ + G G + ++ L Sbjct: 126 IAPKDRSATLNATVSKVACGAAEVVPYITVTNLARTLRDLKDAGVWIAGTTMEADTDLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A ++G+EG+G+R T+E + + M G +++LNVS ++ + L ++ Sbjct: 186 FDAAGPLAWVMGSEGEGMRRLTREHCDVLVSIPMFGSVESLNVSVSSGMVLSESRRQR 243 >gi|160871681|ref|ZP_02061813.1| RNA methyltransferase, TrmH family, group 3 [Rickettsiella grylli] gi|159120480|gb|EDP45818.1| RNA methyltransferase, TrmH family, group 3 [Rickettsiella grylli] Length = 253 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 75/252 (29%), Positives = 119/252 (47%), Gaps = 15/252 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQ 99 +QPE F++G HT++A L + +KI L ++ + + H P+ T+ Sbjct: 2 RNQPEKEFIFGFHTITALLKSAPQKIDTLYCREDRQDKRVQSIRNLAKLHGIPIGTLSKV 61 Query: 100 TIDKIVGKEAVHQGLALET-----------APLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 ++I AVHQG+ + L L N L+VLD V DPHN+G Sbjct: 62 QCNEIA-PNAVHQGVFAKIKKTSRLNEQDLMIFLHHRLHNNLNPPFLLVLDGVQDPHNLG 120 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A LRSA A D +I + + +++ ++ K+A+GA E ++NL L+++ G Sbjct: 121 ACLRSANAAGVDAVIIPQDRAVNKTPIVQKTAAGAAEVTSLFTVTNLATCLERLKKCGIW 180 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 GL + + +AL+LGAEGKGLR T+ + + M G + +LNVS A Sbjct: 181 CYGLDQSGTRLIYDAPLTGPLALVLGAEGKGLRRLTKVCCDDLVAIPMVGTVGSLNVSVA 240 Query: 269 AAVALYITQNHF 280 A V L+ Sbjct: 241 AGVGLFEVVRQR 252 >gi|148381081|ref|YP_001255622.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str. ATCC 3502] gi|153930840|ref|YP_001385454.1| RNA methyltransferase [Clostridium botulinum A str. ATCC 19397] gi|153936028|ref|YP_001388861.1| RNA methyltransferase [Clostridium botulinum A str. Hall] gi|168179627|ref|ZP_02614291.1| RNA methyltransferase, TrmH family [Clostridium botulinum NCTC 2916] gi|148290565|emb|CAL84694.1| putative RNA methylase [Clostridium botulinum A str. ATCC 3502] gi|152926884|gb|ABS32384.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str. ATCC 19397] gi|152931942|gb|ABS37441.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str. Hall] gi|182669725|gb|EDT81701.1| RNA methyltransferase, TrmH family [Clostridium botulinum NCTC 2916] Length = 259 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 107/262 (40%), Gaps = 9/262 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ K+++ +K ++ +Q ++ + G AL + S + ++ + +L +L+ Sbjct: 4 SKDNQLIKEVRKLREK-KYRTQNKSFIVEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61 Query: 84 ---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 N+ + V + I G QG+ LD +L+ D Sbjct: 62 LYKKYNINNDIETYVVSYSVLKSI-GNTENPQGIVSVINYFKKEKLDLQNGFYILV--DK 118 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A GIITTK + +S G++ +IP I NL Sbjct: 119 VQDPGNMGTIIRTAHAAGALGIITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENLEVVKS 178 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + + +K D + + +G EG G+ + + MPG Sbjct: 179 LRKKGFKLLVSSLDTNSNFYDVNMK-DNMIIAVGNEGNGISEVLNTLSDIKVKIPMPGAA 237 Query: 261 KALNVSNAAAVALYITQNHFAK 282 ++LNV+ A ++ + K Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259 >gi|294791945|ref|ZP_06757093.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. 6_1_27] gi|294457175|gb|EFG25537.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. 6_1_27] Length = 243 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 109/238 (45%), Gaps = 8/238 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPFPVKTVPPQTIDKIVGK 107 ++ G + V AL + L++ L V+ P + ++K Sbjct: 4 YIVGRNAVKEALKSGRSIQRILVSEDKVKTGLADIVGLAKSQGIEVRPTPIKQMNKY-DL 62 Query: 108 EAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E HQG+ + + L + LL++ D V DPHN+GAI+R+A + Sbjct: 63 EVPHQGVIALVSAVQFKELGEVLQETTHEVPLLILTDGVEDPHNMGAIIRTAECVGATAV 122 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + KR++ +A +AK+++GA+E IP +++ N+ ++++ GF +G + + L + Sbjct: 123 LIPKRHNAPINATVAKTSAGAIEQIPLVQVGNVAQTIKQLQKQGFWVMGAHMEGDRTLYE 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +++G EGKG+ +E + + M G + +LN S AAAV +Y Sbjct: 183 ADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQR 240 >gi|152995437|ref|YP_001340272.1| RNA methyltransferase [Marinomonas sp. MWYL1] gi|150836361|gb|ABR70337.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp. MWYL1] Length = 255 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 13/249 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102 + ++YG+H V ALN +I ++ + + + V + +D Sbjct: 2 SDLEWIYGIHAVENALNQQPERIKEVRFQEGRDDKKTQRLMQLCKANKVRHSVVARRDLD 61 Query: 103 KIVG---KEAVHQGLALETAPLLSPTLDAVR-------NSQLLMVLDHVNDPHNIGAILR 152 ++ VHQG+ TA + + + L+++LD V DPHN+GA LR Sbjct: 62 QLFTANKDRVVHQGVVAYTAMNKAGNEADLHSLVAGLEETPLIIILDGVTDPHNLGACLR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A ++ K S +A ++K A GA E IP ++NL ++K+ G G Sbjct: 122 SADAAGAHAVVMPKDNSAPLNATVSKVACGAAESIPVYAVTNLARTMKKLQDQGVWIFGT 181 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + ++ + + ++ A+++GAEG G+R T+E + L M G++ +LNVS A V Sbjct: 182 AGEATQTIYEQDLTIPTAIVMGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSVATGVC 241 Query: 273 LYITQNHFA 281 LY A Sbjct: 242 LYEVVRQRA 250 >gi|310659526|ref|YP_003937247.1| hypothetical protein CLOST_2222 [Clostridium sticklandii DSM 519] gi|308826304|emb|CBH22342.1| putative enzyme [Clostridium sticklandii] Length = 242 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 93/240 (38%), Gaps = 13/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL + R I L K + +K V +D++ + Sbjct: 3 ISGRNPVLEALKSN-RTIDCLYIKAGDKEGSIKKILSIAKEQKILIKEVDKTKLDELA-E 60 Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ L+ ++LD + DPHN+GAI+RSA Sbjct: 61 GTQHQGVVALVTDYKYYELEEVLDEIREKDEKPFFIILDEIEDPHNLGAIIRSAEGAGAH 120 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I KR S S +A + K+A+GA + + + + I + Sbjct: 121 GVIIPKRRSASVNATVEKTAAGAASY-MKVIKVTNLVSTVEKLKKEGIWIYALDMDGESY 179 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL++G EGKG+ ++ + M G + +LN S AA++ LY Sbjct: 180 DTVDLKGSVALVVGNEGKGISRLLKDNCDFTLKIPMKGNVGSLNASVAASILLYEVVRQR 239 >gi|121602580|ref|YP_989621.1| RNA methyltransferase [Bartonella bacilliformis KC583] gi|120614757|gb|ABM45358.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583] Length = 274 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 86/256 (33%), Gaps = 5/256 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLD 82 ++ K +++ N+K + +Q G+ V ALN + + N Sbjct: 12 SNPIIKDLKALNKKKK-RNQEGLFMAEGLKLVIDALNLGWTIQTLIFSKSTQGNTTIENT 70 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 L + V + ++ I ++ + + + + LD V Sbjct: 71 AAHILANGGYVIRASQKIMESITHRDNPQTVVGIFKQQWHPIETITESAKDVYIALDRVR 130 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+A A G+I + + ++ + N L Sbjct: 131 DPGNLGTIIRTADAVGAKGVILI-GETTDPFSPETVRSTMGSIFSIPLYRFNENAFLDWS 189 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 ++ IG I L++G E +GL +A + G + Sbjct: 190 TNFKGMIIGAHLQGAVDYRTIDFKGPIILLMGNEQQGLSNALANRCHQLARIPQNGHADS 249 Query: 263 LNVSNAAAVALYITQN 278 LN++ A A+ LY + Sbjct: 250 LNLAIATAIMLYEIRR 265 >gi|295091183|emb|CBK77290.1| rRNA methylases [Clostridium cf. saccharolyticum K10] Length = 278 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 47/267 (17%), Positives = 109/267 (40%), Gaps = 15/267 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K++ + ++++ + + G S P ++ + T++ L + +A Sbjct: 6 SNSQVKQVSAIAKRAKARRESGLFIVEGEKMFSEL---PKERLHRTYVTESFLRQQGEEA 62 Query: 86 -NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-----------PTLDAVRNSQ 133 L +TV + + + + LAL + Sbjct: 63 DRLLAGCRYETVTDEVMKAMADTQTPQGILALCRQFSYELSDILGERKEGDEHTQEKAPA 122 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++L+ + DP N+G ILR+ G+I + + + +S G++ +P++ + Sbjct: 123 QLVILETLQDPGNLGTILRAGEGAGITGVIMNSTTADIYNPKVIRSTMGSVYRVPFVYVE 182 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +L A++++ G + +K +Q+ ++G E GL +T E A + Sbjct: 183 DLAGAVRRVKQAGVRLYAAHLKGEKNYDQQDYTGSTGFLIGNEANGLSDETAELADAYIK 242 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 + M G +++LN + AA++ +Y T Sbjct: 243 IPMLGKVESLNAAVAASILMYETARQR 269 >gi|256847491|ref|ZP_05552937.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] gi|256716155|gb|EEU31130.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] Length = 257 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 52/270 (19%), Positives = 103/270 (38%), Gaps = 16/270 (5%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68 E+I S+ + H K + + + + L G H V A ++ R I Sbjct: 2 REQITSVHNQH----------VKDWRKLQTR-KGRKKFGQYLLDGWHLVQEASHSNQRLI 50 Query: 69 FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 + + + D A + V V P+ I I +A+ P ++ + Sbjct: 51 ALIGSAEELSQHEDIVARFEN---VYEVTPEIIKHITETNTPQGIVAVVEMPDVNQVTNP 107 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + LL+ D V DP N+G ++R+A A G++ +KR + + + +S G+ H+ Sbjct: 108 KTGAWLLL--DRVQDPGNVGTMVRTADAAGFAGVVASKRTADFFNPKVVRSMQGSQFHLQ 165 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + K AL++G EG+G+ + Sbjct: 166 LVVADLKRWINDFQDDQHPVYGTQLNPLAKNFRHVQPGKDFALVMGNEGQGMAEELLNQT 225 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 T+ ++ M G ++LNV+ +A + ++ Sbjct: 226 TTNLYIPMRGNAESLNVAVSAGILMFQLNQ 255 >gi|116630022|ref|YP_815194.1| rRNA methylase [Lactobacillus gasseri ATCC 33323] gi|238853791|ref|ZP_04644157.1| rRNA methylase [Lactobacillus gasseri 202-4] gi|282851363|ref|ZP_06260728.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri 224-1] gi|311110348|ref|ZP_07711745.1| rRNA methylase [Lactobacillus gasseri MV-22] gi|116095604|gb|ABJ60756.1| rRNA methylase [Lactobacillus gasseri ATCC 33323] gi|238833600|gb|EEQ25871.1| rRNA methylase [Lactobacillus gasseri 202-4] gi|282557331|gb|EFB62928.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri 224-1] gi|311065502|gb|EFQ45842.1| rRNA methylase [Lactobacillus gasseri MV-22] Length = 253 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 105/251 (41%), Gaps = 6/251 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K ++ QK ++ + + + G H V AL N ++ +L T AL +L Sbjct: 8 NNPTIKNLRKLEQK-KYRKKTQTYLIEGFHLVEEALKNHENYLY-ILGTSEALEKLTTSY 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 L +K K + + L S + + + +VLD++ DP Sbjct: 66 RLKDDKVIKITDAIAEHLSSTKNSQDIFMVLPINQPKSFSFEYGKW----VVLDNLTDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A DG++ ++ + + +S G+ HI ++ L + Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIVQNPILEAISSFKENG 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + + K L I ++AL++G E G ETA ++ + G ++LN Sbjct: 182 IPVYVSILDKTAKSLNNCIPVPQLALVIGNEAHGASKDVIETADKKIYIPIKGKAESLNA 241 Query: 266 SNAAAVALYIT 276 + AA + +Y Sbjct: 242 AVAAGIMIYHF 252 >gi|260588913|ref|ZP_05854826.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM 20583] gi|260540692|gb|EEX21261.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM 20583] Length = 269 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 109/266 (40%), Gaps = 12/266 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ KK+Q +K++ + + + G+ S + +K++ L+ A Sbjct: 6 SNVQIKKVQQILKKAKVRREEQVFAVEGIKMFSEVPKSRLQKVY--LSQSFARKEECEKI 63 Query: 86 NLPHPFPVKT------VPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMV 137 L ++ V + + QG+ + + + LLM+ Sbjct: 64 LLEKGISIEETEYVELVDDKIFKNLSD-TVTPQGVLCLVKMENYTLSEILSGEENPLLMI 122 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L+ + DP N+G ILR+ G+I ++ + + +S G++ +P I ++++ + Sbjct: 123 LEDLQDPGNLGTILRTGEGAGVTGVIMSRTSVDVFNPKVIRSTMGSVYRMPIIYVNSIEE 182 Query: 198 ALQKM-HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + + G T + ++E A ++G EG GL + E+A ++ + M Sbjct: 183 EVLPLLKEKGITTYAAHLKGRNDYDEECYTKGTAFLIGNEGNGLTEQLTESADTLIKIPM 242 Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282 G +++LN + A+ + +Y K Sbjct: 243 QGKVESLNAAMASGILMYEAYRQRRK 268 >gi|167745715|ref|ZP_02417842.1| hypothetical protein ANACAC_00408 [Anaerostipes caccae DSM 14662] gi|167655027|gb|EDR99156.1| hypothetical protein ANACAC_00408 [Anaerostipes caccae DSM 14662] Length = 246 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 105/243 (43%), Gaps = 12/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E L G + V AL KI+ L ++ R + V + +D++ Sbjct: 4 EEYLLAGRNAVLEALRAGKPIDKIYILDGCQDGPVRTIVREAKKTDAVLNFVEKERLDQL 63 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ A ++ + ++LD + DPHN+GAI+R+A Sbjct: 64 TKEH--HQGVVAMAAAYEYGQMEDLFARAEEKKEDPFFILLDGIEDPHNLGAIIRTANLA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR + + +AK+++GAL + P ++++NL+ ++++ G + Sbjct: 122 GAHGVIIPKRRAVGLTPTVAKTSAGALNYTPVVKVTNLSKTMEELKERGLWFVCA-DMDG 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + ++ I L++G EG G+ +E A + M G I +LN S AA V Y Sbjct: 181 DMMYRQNLTGPIGLVIGNEGSGVSRLVKERCDYTASIPMNGDIDSLNASVAAGVLAYEIV 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|320539669|ref|ZP_08039333.1| putative 23S rRNA (Gm2251)-methyltransferase [Serratia symbiotica str. Tucson] gi|320030281|gb|EFW12296.1| putative 23S rRNA (Gm2251)-methyltransferase [Serratia symbiotica str. Tucson] Length = 255 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R V+ Q +D+ Sbjct: 2 SEIIYGIHAVKALLERDPQRFLEVFIPKGRGDRRLQPLITELETTGLAVQVASRQWLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + AVHQG+ P + + ++ L+VLD V DPHN+GA LRSA A Sbjct: 62 V-EGAVHQGIIARVREGRKPQENDLPALLESVDTPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A K A GA E++P IR++NL L+ + +G S ++ Sbjct: 121 VHAVIVPRDRSAQLNATAKKVACGASENVPLIRVTNLVRTLRLLQEMNVWVVGTSGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEGKG+R T+E + + M G++ +LNVS A + L+ Sbjct: 181 TLYQSKMTGPMALVMGAEGKGMRRLTREHCDELISIPMAGMVSSLNVSVATGICLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|183600321|ref|ZP_02961814.1| hypothetical protein PROSTU_03883 [Providencia stuartii ATCC 25827] gi|188020111|gb|EDU58151.1| hypothetical protein PROSTU_03883 [Providencia stuartii ATCC 25827] Length = 249 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 8/243 (3%) Query: 48 NLFLYGVHTVSAAL---NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++++ L ++ V+ Q +D Sbjct: 2 SEIIYGIHAVKALLDRDASRFKEVYILKGREDRRLMPIIHEIESLGIVVQVANRQWMDAQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L+VLD V DPHN+GA LRSA A Sbjct: 62 TEGAVHQGIIAKVLPGKQYQEGDLPDFLESTDTPFLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E +P R++NL L+ + + +G + ++ Sbjct: 122 HAVIVPKDKSAQLNATAKKVACGAAESVPLFRVTNLARTLRLLKEYNVWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKLTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLFEAVRQ 241 Query: 280 FAK 282 A+ Sbjct: 242 RAE 244 >gi|331083397|ref|ZP_08332509.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA] gi|330404090|gb|EGG83638.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA] Length = 269 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 112/264 (42%), Gaps = 8/264 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF--QLLATKNALARLDW 83 ++ KK+Q +K++ + + + G+ S + +K++ Q A K R+ Sbjct: 6 SNVQIKKVQQILKKAKVRREEQVFAVEGIKMFSEVPKSRLQKVYLSQSFAEKEECGRILQ 65 Query: 84 D--ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLD 139 + ++ V+ V + + QG+ + + + LLM+L+ Sbjct: 66 EKGISIEETAYVEIVDDKIFKNLSD-TVTPQGVLCLVKMENFTLSEILSGEENPLLMILE 124 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N+G ILR+ G+I ++ + + +S G++ +P I ++++ D + Sbjct: 125 DLQDPGNLGTILRTGEGAGVTGVIMSRTSVDVFNPKVIRSTMGSVYRMPIIYVNSIEDEV 184 Query: 200 QKM-HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + G T + + ++E A ++G EG GL E A ++ + M G Sbjct: 185 LPLLKEKGITTYAAHLEGRNDYDKECYTKGTAFLIGNEGNGLSEHLTERADTLIKIPMQG 244 Query: 259 IIKALNVSNAAAVALYITQNHFAK 282 +++LN + A+ + +Y K Sbjct: 245 KVESLNAAMASGILMYEAYRQRRK 268 >gi|227489408|ref|ZP_03919724.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227541002|ref|ZP_03971051.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227090586|gb|EEI25898.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227183262|gb|EEI64234.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] Length = 302 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 66/245 (26%), Positives = 122/245 (49%), Gaps = 5/245 (2%) Query: 40 SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALAR-LDWDANLPHPFPVKTV 96 + + + G + V L+ P+ +F + TKN + P+ V Sbjct: 47 RHYKPNMSDELVVGRNPVIECLHAKVPAVAMFVAIGTKNDQRLVEAVNIAASRSIPIVEV 106 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 Q +D++ G +HQG+ L+ L D + + +++ LD++ DP N+GA++RS Sbjct: 107 SKQKLDEMTG-NGLHQGIGLQIPEYHYADLEDLITHDGMVVFLDNITDPRNLGAVIRSVA 165 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF DG++ +R S S +AV +S++G +P +++N+T AL++ G+Q IGL + Sbjct: 166 AFGADGVVIPERRSASVTAVTWRSSAGTAARVPVAKVTNMTRALKQFQEAGYQAIGLDAG 225 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + + +++G+EGKGL +ET ++ + M G +++LN S AA V L Sbjct: 226 GEHTHDSYDGTGPVVIVVGSEGKGLSRLVKETCDTIVTIPMEGWVESLNASVAAGVVLAE 285 Query: 276 TQNHF 280 Sbjct: 286 FARQR 290 >gi|305666461|ref|YP_003862748.1| putative rRNA methylase [Maribacter sp. HTCC2170] gi|88708728|gb|EAR00963.1| putative rRNA methylase [Maribacter sp. HTCC2170] Length = 268 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 98/259 (37%), Gaps = 5/259 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K +SR + L G ++ A+ I + K ++ + D Sbjct: 11 QNPLIKNAVQLRDRSRERKKTGLFILEGKRELTLAIKANY-IIQTVFICKEIISDQEIDL 69 Query: 86 NLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 L + F + V K+ +E+ LA+ S +R + L++V + Sbjct: 70 VLSNIHDGFELIEVTKIVYHKMAYRESTEGILAIVKGKNHSLENIRLRKNALILVAEAPE 129 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 P NIGA+LR+A A + D ++ +S I + + + + + Sbjct: 130 KPGNIGALLRTADAANLDAVLI-ANPKGDLYNPNIVRSSVGCVFTNQIGLGSTSQIIDFL 188 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + + +P Q A+++G E GL + +T+ + M G I + Sbjct: 189 KKKQINLFCAALSASQPYTQVNFEKAAAIVVGTESTGLSQEWLNASTNNIIIPMEGEIDS 248 Query: 263 LNVSNAAAVALYITQNHFA 281 +NVS +AA+ ++ + + Sbjct: 249 MNVSVSAAILIFEAKRQRS 267 >gi|290473408|ref|YP_003466274.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004] gi|289172707|emb|CBJ79478.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004] Length = 245 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 105/242 (43%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 + +YG+H V A L+ ++ ++ K RL V+ Q +D Sbjct: 2 SEIIYGIHAVKALLDREPQRFMEVYVLKGREDRRLTPLLRELEDIGITVQLANRQWLDTQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D L+VLD V DPHN+GA LR+A A Sbjct: 62 TESAVHQGIIAKVKPGRQYQESDLPDFLSQLDRPFLLVLDGVTDPHNLGACLRTADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I + S +A K A GA E++P IR++NL L+ + +G + ++ Sbjct: 122 DAVIIPRDRSAQLNATTKKVACGAAENVPLIRVTNLARTLRLLQESNIWIVGTAGEATHS 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKLTGPVALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEIMRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|228476493|ref|ZP_04061183.1| rRNA methylase [Streptococcus salivarius SK126] gi|228251914|gb|EEK10960.1| rRNA methylase [Streptococcus salivarius SK126] Length = 245 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 58/274 (21%), Positives = 106/274 (38%), Gaps = 31/274 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K++ I S + + +H L G H A Sbjct: 1 MEIIQSKQNASIKSARKL-------------------LQRKHRKTS--YLLEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 I Q+ + R+ + VK V P+ + ++ + QG+ E A Sbjct: 40 -KASGADILQVFVLEEMANRV------ANMAKVKLVSPEVLKELCETQ-TPQGIVAEVAK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 +++ LL+ + V DP N+G ++R+A A DG+ + + + + +S Sbjct: 92 QSQALPESLSGKYLLL--EDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R L SD + + AL++G EG+G+ Sbjct: 150 QGSHFHLPIYRGPILDMVEACKKQGVPVLATTLSDISVDYKAVKTDGNFALVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E+A + H+ MPG ++LNV+ AA + ++ Sbjct: 210 SQDMAESADQLVHISMPGQAESLNVAVAAGILMF 243 >gi|317129877|ref|YP_004096159.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cellulosilyticus DSM 2522] gi|315474825|gb|ADU31428.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cellulosilyticus DSM 2522] Length = 250 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 95/277 (34%), Gaps = 28/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M+ I + ++ + K H + + + GVH + A Sbjct: 1 MDPIESTSNPRVKTWKKLH-------------------SRKGREKTGLFLVEGVHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L ++ + + P V + + +I E Sbjct: 42 LKAFIHMKELVI----DVDKEIPVEWKVSNVPQVFVTNKVMKEICETETPQG---FVAIC 94 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + + LD + DP N+GAI+R+A A +G++ + + + ++ Sbjct: 95 ELPDNKNVPLERGKFLFLDGLQDPGNVGAIIRTADAAGINGVVLGEGTVDPFNGKVIRAT 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P R+ ++ + +S D ALI+G EG G+ Sbjct: 155 QGSIFHLPVQRMDL--KEAVQICKEKNIPVFGTSLQGSTYNAIQPQDNFALIVGNEGSGV 212 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 E ++ + G ++LNVS A + LY + Sbjct: 213 EDTLLEMTDQNLYIPIHGKAESLNVSIATGILLYHLR 249 >gi|170759752|ref|YP_001788451.1| RNA methyltransferase [Clostridium botulinum A3 str. Loch Maree] gi|169406741|gb|ACA55152.1| RNA methyltransferase, TrmH family [Clostridium botulinum A3 str. Loch Maree] Length = 259 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 107/262 (40%), Gaps = 9/262 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ K+++ +K ++ +Q ++ + G AL + S + ++ + +L +L+ Sbjct: 4 SKDNQLIKEVRKLREK-KYRTQNKSFIVEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61 Query: 84 ---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 N+ + V + I G QG+ LD +L+ D Sbjct: 62 LYKKYNINNDIETYVVNYSVLKSI-GNTENPQGIVSVINYFKREKLDLQNGFYILV--DK 118 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A G+ITTK + +S G++ +IP I NL Sbjct: 119 VQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENLEVVKL 178 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + + +K D I + +G EG G+ + + MPG Sbjct: 179 LQKKGFKLLVSSLDTNSNFYDVNMK-DNIIIAVGNEGNGISEVLNTLSDIKVKIPMPGAA 237 Query: 261 KALNVSNAAAVALYITQNHFAK 282 ++LNV+ A ++ + K Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259 >gi|307543249|gb|ADN44264.1| TrmH family RNA methyltransferase [Pseudomonas syringae] Length = 255 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 8/239 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG+H V A L + +++ Q+ ++ R+ L + + + V E Sbjct: 7 IYGIHAVEALLRHHPKRVKQVWLAESRNDPRVQTLIALAAENRIDVGNAERREMDVWVEG 66 Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P LD + L++VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLNELLDRTEGAPLILVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL L+K+ G +G + ++++ L Sbjct: 127 IVPKDKSATLTPTVQKVACGAAEVIPLVAVTNLAATLKKLQQRGLWIVGTAGEAEQELYD 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + LI+GAEGKG+R T+E + L M G + +LNVS A V L+ + Sbjct: 187 QDMTGPTILIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 245 >gi|295133533|ref|YP_003584209.1| rRNA methylase [Zunongwangia profunda SM-A87] gi|294981548|gb|ADF52013.1| putative rRNA methylase [Zunongwangia profunda SM-A87] Length = 268 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 99/260 (38%), Gaps = 6/260 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K + KSR+ + + G+ AL K+ ++ + ++ + Sbjct: 9 QNKRIKHLLQLQDKSRNRRKESQFVVEGLRETGLALQ-GGFKLLEVYFCPEFFSENEFKS 67 Query: 86 N---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-PTLDAVRNSQLLMVLDHV 141 + + + K+ + + + + + + L+ N+ L++V + Sbjct: 68 IPDFEHADAEIIEISSEVYQKLAYRTSTEGVITVFASKENALQKLNFSHNNPLILVAEAP 127 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 P NIGA+LR+A A + D ++ +S I I ++ ++ Sbjct: 128 EKPGNIGALLRTADAANVDAVLI-ANPKTDLYNPNIIRSSVGCVFTNKIAIGTTSEIIKF 186 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + + + + A+++G E GL + +E AT + M G I Sbjct: 187 LQHKNIAIYAAALQASEIYTKIDFTKASAIVVGTEATGLNQEWREAATQNIIIPMNGAID 246 Query: 262 ALNVSNAAAVALYITQNHFA 281 ++NVS AA + ++ + + Sbjct: 247 SMNVSVAAGILIFEAKRQRS 266 >gi|322436781|ref|YP_004218993.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp. MP5ACTX9] gi|321164508|gb|ADW70213.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp. MP5ACTX9] Length = 263 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 68/247 (27%), Positives = 114/247 (46%), Gaps = 13/247 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW------DANLPHPFPVKTVPPQTI 101 LYG+H V A+ + R++ +L +++ + D + V P + Sbjct: 1 MEVLYGLHPVEEAIRSGGRRLEYVLISRDRRDKGDDRLTKLVELCKLAGVRVSIEPKDQL 60 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ G +A HQG ++ + + + LD V DPHN+GA+LRSA Sbjct: 61 TRVAGTDA-HQGAVAAVRERQFLAIEDLLAAKGNFDKRFFLALDGVEDPHNLGALLRSAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 DG++ R S S V+AK+++GA EH+ R++NL +L++M +GL Sbjct: 120 GAGVDGVVLPDRRSAPLSGVVAKTSAGASEHVKIARVTNLVRSLEQMKRANIWVLGLDER 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 N L+LG+EG GL T++T + + M G + +LNVS A AV +Y Sbjct: 180 GTPDYTAFDFNSDCVLVLGSEGTGLHDLTKKTCDHLLRIPMAGSVSSLNVSVAGAVVMYE 239 Query: 276 TQNHFAK 282 ++ Sbjct: 240 ALRQRSQ 246 >gi|238750079|ref|ZP_04611582.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia rohdei ATCC 43380] gi|238711623|gb|EEQ03838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia rohdei ATCC 43380] Length = 246 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 109/242 (45%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104 + +YG+H+V A L+N ++ ++ K R V+ Q +D Sbjct: 2 SEIIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVVQVASRQWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 V +A D + L+VLD V DPHN+GA LRSA A Sbjct: 62 VEGGVHQGIVARVREGRQYQENDLPALLASVETPFLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A+ K ASGA E++P I+++NL L+ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQENNVWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241 Query: 280 FA 281 A Sbjct: 242 RA 243 >gi|253991546|ref|YP_003042902.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638424|emb|CAR67046.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (ec 2.1.1.-) (23 rrna gm2251 2'-o-methyltransferase) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782996|emb|CAQ86161.1| 23S rRNA (guanosine-2'-o-)-methyltransferase [Photorhabdus asymbiotica] Length = 245 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 106/242 (43%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 + +YG+H V A L+ ++ ++ K RL+ + V+ Q +D Sbjct: 2 SEIIYGIHAVKALLDRDPQRFMEVYVLKGREDRRLNPLIHELENIGVTVQLANRQWLDNQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L+VLD V DPHN+GA LRSA A Sbjct: 62 TEGAVHQGVIAKVKPGRQYQENDLPDLLAKVETPFLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A K A GA E +P +R++NL L+ + +G + ++ Sbjct: 122 HVVIVPRDRSAQLNATAKKVACGAAESVPLVRVTNLARTLRVLQEHNIWVVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q IAL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKLTGPIALVMGAEGEGMRRLTREHCDELISIPMTGSVSSLNVSVATGVCLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|160941168|ref|ZP_02088505.1| hypothetical protein CLOBOL_06061 [Clostridium bolteae ATCC BAA-613] gi|158435729|gb|EDP13496.1| hypothetical protein CLOBOL_06061 [Clostridium bolteae ATCC BAA-613] Length = 270 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 104/260 (40%), Gaps = 10/260 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ K++ S K++ + + G+ + L T+N + Sbjct: 6 SNKQVKRVVSLRSKAKARREEGMYVVEGLRMCREL---NPEDVDALYVTENFAGD-ADNR 61 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDH 140 F +TV ++ + + QG+ D V+ + +MVL+ Sbjct: 62 KWMGRFRPETVSDVVMNVMADTQ-TPQGVLAVVRQKRYTMDDIVKPAPDGRSLAIMVLET 120 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G I+R+ GI+ + + + +S G++ +P++ +L DA Sbjct: 121 IQDPGNLGTIIRAGEGAGITGIVMNHDTADIYNPKVIRSTMGSIFRMPFVYADDLQDACL 180 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 M + G + +QE D + ++G E GL +T A + + M G + Sbjct: 181 LMKNRGVRLFAAHLKGMNNYDQEDYTDNVGFLIGNEANGLTEETTSLADCLVKIPMEGKV 240 Query: 261 KALNVSNAAAVALYITQNHF 280 ++LN + AA+V ++ T Sbjct: 241 ESLNAAIAASVLMFETARQR 260 >gi|315640328|ref|ZP_07895445.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus italicus DSM 15952] gi|315483990|gb|EFU74469.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus italicus DSM 15952] Length = 278 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 79/271 (29%), Positives = 131/271 (48%), Gaps = 10/271 (3%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHTSQPENL---FLYGVHTVSAALNNPS-RKIFQLLAT 74 +Y K RN + K + + E L F++G H V AL K+F L Sbjct: 4 NYKKESRNVGNKKDTRKQTVRKDKEMTAEELAENFVFGHHAVVEALKKGRGNKLFLLEDA 63 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----AVR 130 + + + PVK VP Q +++ ++ VHQG+ L P +LD Sbjct: 64 RGERIDEVKELSKEQSVPVKWVPKQKLEQYS-QQGVHQGMVLAITPYEYLSLDELLAKSP 122 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++LD++ DPHN G+ILR+A A DGII K + + V+ K+++GA+EH+P Sbjct: 123 EKPFFIILDNLEDPHNFGSILRTADASGVDGIIIPKHRAVGITPVVVKTSTGAVEHVPIA 182 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R++NL+ A+Q + GF T G + + IALI+G EG+G+ +++ Sbjct: 183 RVTNLSQAVQTLKERGFWTFGTAMEGTNYRSWNT-QGAIALIIGNEGRGMSEGLKKSVDE 241 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M G +++LN S AA + +Y + Sbjct: 242 LLTIPMVGHVQSLNASVAAGLLMYEAFMQRS 272 >gi|313902851|ref|ZP_07836248.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter subterraneus DSM 13965] gi|313466971|gb|EFR62488.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter subterraneus DSM 13965] Length = 306 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 57/238 (23%), Positives = 94/238 (39%), Gaps = 8/238 (3%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G V L + R ++ + A PV + P + + V E Sbjct: 44 VEGRQPVLELLRSGHPVRHVWVAAGRRGAALAELEALARRRGVPVTEIDPAELQRRVQTE 103 Query: 109 AVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +AL LD R LL++ + DPHN+GA+ RSA A G Sbjct: 104 GHQGVIALAAPLPQPDPLDLLEVASRRREPPLLVICAGIQDPHNLGAVFRSAEAAGAHGA 163 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + S KS++GAL H+ +++NL +++ G + + +P +Q Sbjct: 164 VVPVHRSAPLGPTAFKSSAGALVHLAVAQVANLNQVVRRFKEQGVWVVAADPEGAQPYDQ 223 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 AL+LG+EG+G+ P + M G + +LNVS AA + L+ Sbjct: 224 WDWTRPTALVLGSEGRGIPPLLLRQCDGRVFIPMAGKVASLNVSVAAGILLFEAARQR 281 >gi|53803949|ref|YP_114407.1| RNA methyltransferase [Methylococcus capsulatus str. Bath] gi|53757710|gb|AAU92001.1| RNA methyltransferase, TrmH family, group 3 [Methylococcus capsulatus str. Bath] Length = 250 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 9/241 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107 ++G+H AAL+ KI + + + + + +D++ Sbjct: 7 VWGIHAAEAALDYSPDKIVKAWLDDHRMQNRLQAVATRLDELGVEIVRADRKRLDRLADP 66 Query: 108 EAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 L P TLDA L +VLDHV DPHN+GA LR+ A G Sbjct: 67 RKHQGILLELDLPGEQGEAELLDTLDAADGHPLYLVLDHVQDPHNLGACLRTCDAAGVKG 126 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ TK S + +AK ASGA E +P R++NL L + G+ +G + ++++ L Sbjct: 127 LVVTKDQSVGLTPTVAKVASGAAETVPVYRVTNLARCLDRFKQRGYWVVGAAGEAERTLY 186 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + +++GAEG GLR T+E + + M G +++LN+S A + LY + Sbjct: 187 ELDLRLPLVVVMGAEGVGLRRLTRERCDFLLRIPMVGGVESLNLSVATGIVLYEVMRQRS 246 Query: 282 K 282 + Sbjct: 247 R 247 >gi|313624066|gb|EFR94149.1| rRNA methyltransferase [Listeria innocua FSL J1-023] Length = 252 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 54/278 (19%), Positives = 106/278 (38%), Gaps = 26/278 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K++++ + K + + + G H V A Sbjct: 1 MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +LL + +W L + V + I ++ QG+ A Sbjct: 42 LRQDG-LVLELLVSSGVSVPEEW---LKGDYDVFEIS-SEISHLISDTMTEQGVFAVVAI 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L+++D V DP N+G ++R+A A D ++ + + + + +S Sbjct: 97 SE--PDMMLLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVVLGRGSADLYNPKVIRST 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP I+ + D K L K + +AL++G EG G+ Sbjct: 155 QGSHFHIPVIQADLFEWVGNLEEEGVPVIGAVLDDQAKSLNDMPKRETLALMVGNEGNGI 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q+ + ++ + G ++LNV+ AA + LY + Sbjct: 215 SEELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252 >gi|16800250|ref|NP_470518.1| hypothetical protein lin1181 [Listeria innocua Clip11262] gi|16413640|emb|CAC96412.1| lin1181 [Listeria innocua Clip11262] gi|313619318|gb|EFR91052.1| rRNA methyltransferase [Listeria innocua FSL S4-378] Length = 252 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 54/278 (19%), Positives = 106/278 (38%), Gaps = 26/278 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K++++ + K + + + G H V A Sbjct: 1 MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +LL + +W L + V + I ++ QG+ A Sbjct: 42 LRQDG-LVLELLISSGVSVPEEW---LKGDYDVFEIS-SEISHLISDTMTEQGVFAVVAI 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L+++D V DP N+G ++R+A A D ++ + + + + +S Sbjct: 97 SE--PDMMLLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVVLGRGSADLYNPKVIRST 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP I+ + D K L K + +AL++G EG G+ Sbjct: 155 QGSHFHIPVIQADLFEWVANLEEEGVPVIGAVLDDQAKSLNDMPKRETLALMVGNEGNGI 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q+ + ++ + G ++LNV+ AA + LY + Sbjct: 215 SEELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252 >gi|306829232|ref|ZP_07462422.1| RNA methyltransferase [Streptococcus mitis ATCC 6249] gi|304428318|gb|EFM31408.1| RNA methyltransferase [Streptococcus mitis ATCC 6249] Length = 242 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDIRGKNVEKVKELAAEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|108804991|ref|YP_644928.1| RNA methyltransferase TrmH, group 3 [Rubrobacter xylanophilus DSM 9941] gi|108766234|gb|ABG05116.1| RNA methyltransferase TrmH, group 3 [Rubrobacter xylanophilus DSM 9941] Length = 237 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 112/234 (47%), Gaps = 6/234 (2%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YGV V L + R + ++L + R V+ VP + ++ G Sbjct: 3 EVVYGVRPVIEVLRSRRRAVHEVL--DSTGNREVERLAADAGVGVRRVPRGRVARLAG-G 59 Query: 109 AVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 HQG+A P L+ V + L+ VLD V DP N+GA+LR+A + G++ K Sbjct: 60 GAHQGVAARVGPYPYAALEDVLGGENPLVAVLDGVTDPRNLGAVLRAADGAAASGVVVPK 119 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + + K+++GA EH+ R++NL A+ +M G + + + + + Sbjct: 120 DRAAGVTPAAVKASAGASEHVRLARVTNLRRAVDRMKEEGLW-VYAAEPGGENYAEADLS 178 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +AL+LG+EG+G+R +E + + M G + +LNVS AAA+ LY + Sbjct: 179 GPVALVLGSEGRGVRRLVREGCDGVLSIPMLGAVSSLNVSVAAAILLYEARRQR 232 >gi|328543340|ref|YP_004303449.1| RNA methyltransferase, TrmH family, group 3 [polymorphum gilvum SL003B-26A1] gi|326413085|gb|ADZ70148.1| RNA methyltransferase, TrmH family, group 3 [Polymorphum gilvum SL003B-26A1] Length = 265 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 106/253 (41%), Positives = 154/253 (60%), Gaps = 2/253 (0%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 R + + LYG+HTV AA NP R+ +L AT+NAL RL+ Sbjct: 12 RRAGGFVKPAPRRPGLPPEGPILLYGLHTVEAAFQNPDRRRHKLFATENALRRLEERGIR 71 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P PV+ + P+ +D++V ++AVHQG+ LE L + +D ++ ++L++ LD V DPHN+ Sbjct: 72 P-DVPVEILAPRALDRMVTRDAVHQGVVLEADALPAYGVDELKGARLVLALDQVTDPHNV 130 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAILRSAVA + D ++TT+R++P E VLAK+ASGAL+ I ++R+ N+ L +M GF Sbjct: 131 GAILRSAVALAADAVVTTERHAPEEGPVLAKAASGALDMIRHVRVKNMARFLVEMGEQGF 190 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + L SD + LEQ DK L+LG+EGKG+R + +A L MPG I++LNVSN Sbjct: 191 FRVALDSDGEASLEQTPFGDKTVLVLGSEGKGVRQGVRAACDRLARLDMPGRIRSLNVSN 250 Query: 268 AAAVALYITQNHF 280 AA +ALY Sbjct: 251 AAVLALY-VARQR 262 >gi|323142974|ref|ZP_08077682.1| RNA methyltransferase, TrmH family, group 3 [Succinatimonas hippei YIT 12066] gi|322417247|gb|EFY07873.1| RNA methyltransferase, TrmH family, group 3 [Succinatimonas hippei YIT 12066] Length = 254 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 64/250 (25%), Positives = 105/250 (42%), Gaps = 9/250 (3%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTV 96 R + +YGV+ V AAL KI K + + V+T Sbjct: 3 RRNGKQNRELVYGVNAVEAALETAPEKIVSAFIIKGREDDKRISRIMALMNNYGIKVQTA 62 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAIL 151 T+D+I + A D + +VLD V DP N+GA + Sbjct: 63 MRHTLDEITDNGVHQGVVIEMVATPPKNEGDLEELLDTLENPFFLVLDGVTDPRNLGAAM 122 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA A G+I K S S S K+ASGA + +P ++NL L+ + + IG Sbjct: 123 RSAWAAGAHGVIVPKDKSASFSPAARKAASGAADVLPLFAVTNLARTLEMLKERFVRVIG 182 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + ++ + +A+++G+E G+R T+E + + M +++LNVS AA + Sbjct: 183 MDGEASDNIYATDLTGPLAIVMGSEESGMRRLTREKCDDITKIPMAEGVESLNVSVAAGI 242 Query: 272 ALYITQNHFA 281 AL+ + Sbjct: 243 ALFEAVRQRS 252 >gi|67925525|ref|ZP_00518860.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501] gi|67852637|gb|EAM48061.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501] Length = 261 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 103/255 (40%), Gaps = 4/255 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K+++ + +++ + L L G H V A + + Sbjct: 6 RNPLIKQIRKLH-RTKGRREEGLLLLEGTHLVETAYEANCSLMTLCYTEQWRTRYPQLWE 64 Query: 86 NLPHPF-PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 N+ ++ V + + + ++ + TA T + + +L +V++ + DP Sbjct: 65 NVSKKVQRLELVSLEVLTAMT--TTINPDGVVATALFEPFTEGEITDFRLGLVIERLQDP 122 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G I+R+A A DGI + + + ++++GA +P S+L ++K + Sbjct: 123 GNLGTIIRTAAATGIDGIWLSDDSVDVDHPKVLRASAGAWFQVPIFISSDLKRIVEKYKN 182 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 GF + ++ + ++LG EG GL A + + + I++LN Sbjct: 183 NGFNIVATLPNTTQTYWHLQLTKPTLILLGNEGSGLSDSLVSLANEIVSIPLSEGIESLN 242 Query: 265 VSNAAAVALYITQNH 279 V+ A A+ LY Sbjct: 243 VAIATALILYEAXRQ 257 >gi|331002509|ref|ZP_08326027.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410325|gb|EGG89759.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon 107 str. F0167] Length = 261 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 97/263 (36%), Gaps = 9/263 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++ K++ + +KS + + G+ +K L + Sbjct: 4 SSGNKKIKELMALIKKSSARKKQNAYIIEGIRMFREL-----KKDEILDVFVSESFDALN 58 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----AVRNSQLLMVLD 139 + +P V I + V QG+ + + L++LD Sbjct: 59 KKLISEIYPGYEVVSDKIFESVSDTKTPQGVMVVVKRKEYTLENILTVRGEFPHNLLILD 118 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N+G ++R+ GII + + + +S G++ +P+I + +L D + Sbjct: 119 SLQDPGNLGTLVRAGEGAGITGIIMNESTVDIYNPKVIRSTMGSVFRVPFIYVKDLKDII 178 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 +++++ S + + IA I+G E G+ + + + M G Sbjct: 179 EELYARKIDIYASSLEGATEYDAPDYRGSIAFIIGNEAAGISKDVLDAVKNKVKIPMLGE 238 Query: 260 IKALNVSNAAAVALYITQNHFAK 282 +++LN + A ++ +Y K Sbjct: 239 VESLNAAVAGSILMYEAARQRRK 261 >gi|322376908|ref|ZP_08051401.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. M334] gi|321282715|gb|EFX59722.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. M334] Length = 253 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 120/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL K++ + + + +++ +I Sbjct: 15 NDIVYGVHAVTEALRANTGNKLYLQEDLRGKNLEKVKELATEKKVSISWTSKKSLSEIT- 73 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 74 EGAVHQGFVLRVSEFAYSELDHILAKTHQEENPLLLILDGLTDPHNLGSILRTADATNVS 133 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V++K+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 134 GVIIPKHRAVGVTPVVSKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 193 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 194 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252 >gi|312792760|ref|YP_004025683.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179900|gb|ADQ40070.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 253 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 103/242 (42%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL + + KI ++ + +A R + VK V IDK+ + Sbjct: 4 IEGKNPVKEALRSGA-KITEVYISNSAKDRETAQIINLCKQSGIVVKFVDKSKIDKMA-Q 61 Query: 108 EAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+ +D + L++LD + DP N G+I+RSA Sbjct: 62 TKNPQGVIAIAREFEYCDIDDILAEARQRGETPFLVLLDGITDPQNFGSIIRSAHLCGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ R S + + K+++GA+E++ R+ NL ++++ G + KP+ Sbjct: 122 GIVIEARNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFATDASGPKPV 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G+EGKG+ +E A + + G + + N S AA + + Sbjct: 182 YECDFTIPTCIVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQR 241 Query: 281 AK 282 K Sbjct: 242 LK 243 >gi|303232156|ref|ZP_07318859.1| RNA methyltransferase, TrmH family [Veillonella atypica ACS-049-V-Sch6] gi|302513262|gb|EFL55301.1| RNA methyltransferase, TrmH family [Veillonella atypica ACS-049-V-Sch6] Length = 264 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 108/273 (39%), Gaps = 10/273 (3%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67 +S KI ++ ++++ K + S Q+ ++ + + G+ V+ Sbjct: 2 ESPKIDYIQ-------SKDNKTIKHIISLQQR-KYRQKFGEYTVEGIRAVTDIGK--KDC 51 Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 + +L ++ + L+ V +I + QG+ ++ Sbjct: 52 LRSILIRESKRSELEPLVQKGFTVSSVYVVQDSIFDKIEHSVNGQGILGIAKKCVNDLHS 111 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + L + LD V DP N+G I+R+AVA GI K + +S AL +I Sbjct: 112 FIVEDGLYVALDGVQDPGNLGTIIRTAVAAGAKGIFLLKGTVDPYNEKCVRSTMSALCNI 171 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P L++ + +T S ++ KP + +ILG EG G+ + E Sbjct: 172 PIFEDVTLSEFYDFIKDNTIKTYVTSLENAKPYHTISYPKRTMIILGNEGNGVSREIIEM 231 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G I++LNVS AAA+ +Y + Sbjct: 232 CDQAITIPMYGDIESLNVSIAAALCMYKVREQI 264 >gi|153813242|ref|ZP_01965910.1| hypothetical protein RUMOBE_03658 [Ruminococcus obeum ATCC 29174] gi|149830655|gb|EDM85746.1| hypothetical protein RUMOBE_03658 [Ruminococcus obeum ATCC 29174] Length = 247 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 108/239 (45%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K+F L ++ R + V + +D++ Sbjct: 5 IEGRNAVLEAFRSGKCVDKLFILDGCQDGPVRTIAREARKTDTIINYVSKERLDQLSETH 64 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ + A T+D + + L++LD+V DPHN+GAI+R+A G Sbjct: 65 A-HQGVIAQVAAYDYSTVDEILARAEEKGEAPFLIILDNVEDPHNLGAIIRTANLAGAHG 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR + ++ +AK+++GA+ + P +++N+ ++++ G + + + Sbjct: 124 VIIPKRRAVGLTSTVAKTSAGAINYTPVAKVTNIVRTIEELKEKGIWFVCA-DMGGETMY 182 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L++G EG+G+ +E A + M G I +LN S AA V Y Sbjct: 183 DLDLTGPMGLVIGNEGEGVSRLVREACDFTASIPMKGDIDSLNASVAAGVLAYEIVRQR 241 >gi|332685573|ref|YP_004455347.1| TrmH family tRNA/rRNA methyltransferase YacO [Melissococcus plutonius ATCC 35311] gi|332369582|dbj|BAK20538.1| TrmH family tRNA/rRNA methyltransferase YacO [Melissococcus plutonius ATCC 35311] Length = 279 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 72/278 (25%), Positives = 120/278 (43%), Gaps = 11/278 (3%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS-RKIF 69 K K S + K Q +K+ T++ +N ++G H V A+ K+F Sbjct: 2 KNKQSKISQNKHRYKEKNTAKNEQKKMKKTGITTEEDNF-VFGYHAVVEAIQQGRGNKLF 60 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128 +K PVK VP ++ + VHQG+ L +L+ Sbjct: 61 LQEDSKGEKIDKLKQLAQERSLPVKWVPKTKLEMWS-NQGVHQGMVLAITAYEYLSLNEL 119 Query: 129 ------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + ++LD + DPHN G+I R+A A DGII K S + V+ K+++G Sbjct: 120 LEQVKVKTKTPFFLILDGLEDPHNFGSIFRTADATGVDGIIIPKHRSVGITPVVTKTSTG 179 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 A+E+IP R++NL+ + K+ F G + +ALI+G EGKG+ Sbjct: 180 AVEYIPVARVTNLSQIIAKLKEQQFWIFGTDMTGIDYRNWD-ATGALALIIGNEGKGISA 238 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ A + + M G +++LN AA + +Y Sbjct: 239 GLKKEADELITIPMSGHVQSLNAGVAAGLLMYEAYRKR 276 >gi|154505273|ref|ZP_02042011.1| hypothetical protein RUMGNA_02787 [Ruminococcus gnavus ATCC 29149] gi|153794471|gb|EDN76891.1| hypothetical protein RUMGNA_02787 [Ruminococcus gnavus ATCC 29149] Length = 275 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 51/266 (19%), Positives = 103/266 (38%), Gaps = 14/266 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLD 82 +++ K++ +KS+ S+ G+ V P ++ L + + Sbjct: 11 SNQRVKELSQIQKKSKIRSREGIFIAEGIRMVRE---TPHERLVGLYFSESFEKKYGKEV 67 Query: 83 WDANLPHPFPVKTVPPQTIDKIV-------GKEAVHQGLALETAPLLSPTLDAVR-NSQL 134 D V+ + + + QG+ + Sbjct: 68 LDVISGGDLKVREQIRKKTEILSDAVFSYVSDTKTPQGVLAVVHQMEYTLGQMTEGAIPH 127 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 LM+LD++ DP N+G I R+A A GII ++ + +S GAL +P++ + + Sbjct: 128 LMILDNLQDPGNLGTIFRTAEAAGVTGIIMSRDCVDIYNPKTIRSTMGALYRMPFVYVED 187 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L + + + ++ D K ++E A ++G EG GLR + + A + + Sbjct: 188 LRETIHTLKEKNIKSYAAHLDGKNTYDKEDYRQGTAFLIGNEGNGLREEIAQCADTWIRI 247 Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280 M G +++LN + AA V ++ Sbjct: 248 PMCGQVESLNAAVAATVLMFEVSRQR 273 >gi|331701543|ref|YP_004398502.1| tRNA/rRNA methyltransferase SpoU [Lactobacillus buchneri NRRL B-30929] gi|329128886|gb|AEB73439.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus buchneri NRRL B-30929] Length = 256 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 94/273 (34%), Gaps = 24/273 (8%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 I+ ++ ++ Q + + + G H V A+ Sbjct: 4 ERITSNQNNRVKEWTK-------------------MQSKKGRVKSGEYVIEGWHIVDEAI 44 Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 + ++ ++ L L D + + P+ I E QG+ Sbjct: 45 RHRQTIKQLMVVDESYLGDLPVD----DDTEIFLITPEIAKHISSTE-TPQGVFAVLNTE 99 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 ++LD++ DP NIG ++R+A A +GI+ K + + + +S Sbjct: 100 DYHEQIPDDLKGAWLLLDNIQDPGNIGTMVRTADAAGLNGIVFGKGSADLYNPKVVRSMQ 159 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G+ H+ L + +D + ALI+G EG G+ Sbjct: 160 GSQFHMKLFTGDILEWMAAFKEAGVKTYGTELNDQAISYYDITPTKQFALIMGNEGNGVD 219 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 PK E ++ M G ++LNV+ A + L+ Sbjct: 220 PKILEKTDQNLYIPMNGEAESLNVAVATGILLF 252 >gi|227889545|ref|ZP_04007350.1| RNA methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|227850023|gb|EEJ60109.1| RNA methyltransferase [Lactobacillus johnsonii ATCC 33200] Length = 253 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 106/251 (42%), Gaps = 6/251 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K ++ QK ++ + + + G H V AL + ++ L T AL +LD Sbjct: 8 NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEDALKSHENYLYVL-GTAEALKKLDASY 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 L ++ + K + + L S + + + +VLD++ DP Sbjct: 66 KLKDDKVIQITDAISQHLSSTKNSQDIFMVLPINQPKSFSFEYGKW----VVLDNLTDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A DG++ ++ + + +S G+ HI I+ L + Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIIQNPILEAISSFKENG 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + + K L ++AL++G E G + ETA ++ + G ++LN Sbjct: 182 LPVYVSILDKTAKSLNNCTPVPQLALVIGNEAHGASKEVIETADKKIYIPIKGKAESLNA 241 Query: 266 SNAAAVALYIT 276 + AA + +Y Sbjct: 242 AVAAGIMIYHF 252 >gi|16331014|ref|NP_441742.1| hypothetical protein slr0955 [Synechocystis sp. PCC 6803] gi|3915411|sp|P74328|Y955_SYNY3 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase slr0955 gi|1653509|dbj|BAA18422.1| slr0955 [Synechocystis sp. PCC 6803] Length = 384 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 77/291 (26%), Positives = 129/291 (44%), Gaps = 29/291 (9%) Query: 17 DSHYAKLRRNHRDYK--KMQSFNQKSRHTS--------------QPENLFLYGVHTVSAA 60 S + R+ Y + + QK Q LYG H V AA Sbjct: 76 KSRFKDKDRDKPRYGDDRPRRSGQKPPFGKTFPAAPPPMDSEQAQEALDLLYGHHAVLAA 135 Query: 61 LNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 L+ R++ ++ + R + V V +++I A HQG+A Sbjct: 136 LD-GDRQLNRIWITSHLRHDIRYRTKIQTAKANGTVVDEVDNFRLNQIT-HNANHQGIAA 193 Query: 117 ETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 + AP L + + +L+++D + DPHN+GAI+R+A AF G++ +R Sbjct: 194 QVAPYHYWELGDLIDKAKSQSTAPVLIIIDSITDPHNLGAIIRTAEAFGAQGMVLPQRRV 253 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 ++ + K A+GALEH P R+ NL+ AL+ + GF G + + L Q + + Sbjct: 254 AGITSTVMKVAAGALEHFPVARVVNLSRALETLKESGFWIYGTVAGKQTALHQADLREPM 313 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L++G+EG+GL TQ+ + + + G +LN S AAA++LY Sbjct: 314 GLVIGSEGEGLSLLTQKHCDHLITIPLAGKTPSLNASVAAAISLYEIFRQR 364 >gi|325686893|gb|EGD28918.1| RNA methyltransferase [Streptococcus sanguinis SK72] Length = 242 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V AL K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVKEALAANTGNKLYIQDDLRGKKVEKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++N++ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNISQTLDKLKEAGFWIFGTDMQGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|228993286|ref|ZP_04153202.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442] gi|228766354|gb|EEM14997.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442] Length = 257 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 98/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 4 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 44 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L I +L+ + DW + VP + + E A+ Sbjct: 45 LKAG--VITELIVSDQTDLPKDWTV---TDVEMYIVPEAIVKVLRETETTQGVFAVCEKH 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + + ++ + +S Sbjct: 100 EKEIALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + ++ P + ALI+G EG G+ Sbjct: 156 QGSIFHLPIVKGNLEEWVDKLKEKNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 215 RQEVLAKCDQNLYIPIYGGAESLNVAVAAGILTYYLQ 251 >gi|254517454|ref|ZP_05129510.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA] gi|226911203|gb|EEH96404.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA] Length = 298 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 110/266 (41%), Gaps = 12/266 (4%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARL 81 + +++ + N + + + G + V L + R I + ++ Sbjct: 32 KENKNGGEYIRENVSNASELETREDLIIGRNAVMEVLKSD-RTIECVYISNGNMEGSIKV 90 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQL 134 + +K V + +D + HQG+ P + + Sbjct: 91 IINIAREKGLVLKEVDRKKLDAMS-NGTNHQGVIALVTPFKYCQIADMLNDAKEKGEDPF 149 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD + DPHN+G+I+R+A GII KR + ++ + K + GA+EH+ +++N Sbjct: 150 IIVLDEIEDPHNLGSIIRTAELCGVHGIIIPKRRNVGITSTVYKCSVGAIEHMKIAKVTN 209 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + A+ ++ G G ++ Q N A+++G+EG+G+ T + + + Sbjct: 210 INSAIDELKESGLWVYGADIAGEEYSYQVDFNGPCAMVIGSEGRGISKLTLKKCDKLVKI 269 Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280 M G I +LN S A + +Y Sbjct: 270 PMVGKINSLNASVAGGIMMYEILKGR 295 >gi|254492112|ref|ZP_05105287.1| RNA methyltransferase, TrmH family, group 3 [Methylophaga thiooxidans DMS010] gi|224462664|gb|EEF78938.1| RNA methyltransferase, TrmH family, group 3 [Methylophaga thiooxydans DMS010] Length = 246 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 119/241 (49%), Gaps = 11/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G+H V AAL+ P +I ++ ++ A V T+DKI Sbjct: 5 VIFGLHAVQAALDVPVSRIKEIWLAADRQDQRVDALLKAAEQQGVVVHKAERDTLDKIA- 63 Query: 107 KEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG A PL S +++ LL++LD V DPHN+GA LR+A A Sbjct: 64 PNVQHQGCAARCKPLESLDEKGLMTLVESLNEPALLLILDGVQDPHNLGACLRTAEAAGA 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K + +A K +SGA E +P+ +++NL+ ++++ G +G S DS+ Sbjct: 124 HAVIAPKDRASGLTATAVKISSGAAERVPFAQVTNLSRLMRELQDAGVWLVGTSGDSELS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +A++LGAEGKG+R T++ + ++ M G ++LNVS AA V LY Sbjct: 184 LFQAELKGSMAIVLGAEGKGIRRLTRDNCDQVVYIPMQGEAESLNVSVAAGVCLYEAYRQ 243 Query: 280 F 280 Sbjct: 244 R 244 >gi|115378458|ref|ZP_01465617.1| RNA methyltransferase, TrmH family, group 3 [Stigmatella aurantiaca DW4/3-1] gi|310822269|ref|YP_003954627.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1] gi|115364520|gb|EAU63596.1| RNA methyltransferase, TrmH family, group 3 [Stigmatella aurantiaca DW4/3-1] gi|309395341|gb|ADO72800.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1] Length = 273 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 71/259 (27%), Positives = 122/259 (47%), Gaps = 12/259 (4%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLP 88 M+ + +S+ + ++YGV+ V AL ++ +L + L Sbjct: 1 MRDRSSQSQEPRERGERYVYGVNPVLEALRARPDEVERLFIVEGQLGSKAAAEILSRARD 60 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHV 141 + V + + + + VHQG+A E + A + L++VLD + Sbjct: 61 SGIRTERVARERLTTLA-EGGVHQGVAAELRGFEYVDVPDLLEAAKASGRAPLVVVLDGI 119 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DPHN+GAI+RSA A GI+ K + + V+AK+++GA+EH P R+ N++ AL++ Sbjct: 120 QDPHNLGAIIRSAHALGAHGIVIGKDRAVQVTGVVAKASAGAVEHCPIARVVNISRALEE 179 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G + SK+PL + +AL++GAEG G+R + + M G + Sbjct: 180 LKEAGLWVAAADTHSKEPLWGARLDGPLALVVGAEGAGVREGVLKHCDFRLGIPMVGQVG 239 Query: 262 ALNVSNAAAVALYITQNHF 280 +LN S +AAV LY Sbjct: 240 SLNASVSAAVLLYEVARQR 258 >gi|161505128|ref|YP_001572240.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866475|gb|ABX23098.1| hypothetical protein SARI_03262 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 243 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRK---IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + +F L ++ A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQDVFILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P L A+ L++LD V DPHN+GA LRSA A Sbjct: 62 S-EGAVHQGIIARVKPGRQYQENDLPDLIALHERPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 Sbjct: 241 QRI 243 >gi|319891496|ref|YP_004148371.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus pseudintermedius HKU10-03] gi|317161192|gb|ADV04735.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus pseudintermedius HKU10-03] gi|323465333|gb|ADX77486.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus pseudintermedius ED99] Length = 249 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 118/243 (48%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 ++ + G H V A+ + KI K V+TVP +D++ Sbjct: 2 DSEIIVGRHAVREAVISGHTINKILIQEGIKKQQIEEILKVAKSSKLVVQTVPKSKLDQL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP L+ Q +++LD + DPHN+G+ILR+A A Sbjct: 62 A--NAPHQGVAAFVAPYEYADLNQFLAEQAQKEGLSTVLILDGLEDPHNLGSILRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DGII KR S S + +AK+++GA++H+P IR++NL+ + + G+ G + + Sbjct: 120 GVDGIIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTNLSQTMDVLKDKGYWIAGAEASNA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 Q + +A+++G+EG+G+ + +E + M G + +LN S AA++ +Y Sbjct: 180 TDYRQMQADMPLAIVIGSEGQGMSRRVKEKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239 Query: 278 NHF 280 Sbjct: 240 RKR 242 >gi|313633669|gb|EFS00423.1| RNA methyltransferase [Listeria seeligeri FSL N1-067] gi|313638236|gb|EFS03476.1| RNA methyltransferase [Listeria seeligeri FSL S4-171] Length = 252 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 108/278 (38%), Gaps = 26/278 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K++++ + K + + + G H V A Sbjct: 1 MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + +LL +K +W L + V + + I ++ + QG+ Sbjct: 42 IRQDGLVV-ELLVSKGVSVPEEW---LKGNYDVFEISTE-ISHLISETMTEQGVFAVVTT 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L+++D V DP N+G ++R+A A D +I + + + + +S Sbjct: 97 TE--PDMMLLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDAVILGRGSADLYNPKVIRST 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP I+ + + + K L K D +ALI+G EG G+ Sbjct: 155 QGSHFHIPVIQANLFDWVANLEEEGVPVIGAVLDEQAKSLNDISKRDTLALIVGNEGNGI 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q + ++ + G ++LNV+ AA + LY + Sbjct: 215 SEELQARLSEKVYIPIYGKSESLNVAVAAGILLYGLRK 252 >gi|116511397|ref|YP_808613.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11] gi|116107051|gb|ABJ72191.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11] Length = 252 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 56/277 (20%), Positives = 104/277 (37%), Gaps = 30/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +IS K ++K+ + K R+N + + G H + A Sbjct: 1 MEIISSKDNKKVKEARKLLTKKYRKN---------------------SYLIEGFHLLEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L I Q+ +N LA+L V V + + E+ +A Sbjct: 40 LKAGH-SIKQIFVEENKLAKLTAMIGSEKSLTDLSVNLVSKDVLKSLADSESPQGLIAEV 98 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 A + ++L++V DP N+G ++R+A A +I + S + Sbjct: 99 AKIEEVIDFSASK----FLLLENVQDPGNVGTMIRTADAAGFSAVILLGETADLYSPKVM 154 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S G+ H+ R++ + S + + AL++G EG Sbjct: 155 RSMQGSNFHLAIARMNEEECFAALKQAKISILTTTLSANSVSYKTVE-ESSFALVMGNEG 213 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G+ E+A + H+ MPG ++LNV+ AA + ++ Sbjct: 214 AGVSDFAVESADKLVHIDMPGQAESLNVAVAAGILIF 250 >gi|148264836|ref|YP_001231542.1| RNA methyltransferase [Geobacter uraniireducens Rf4] gi|146398336|gb|ABQ26969.1| RNA methyltransferase, TrmH family, group 3 [Geobacter uraniireducens Rf4] Length = 242 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 8/242 (3%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 ++ +YG+++V AL R+ F+L R PV+ + I + Sbjct: 2 KDEIIYGLNSVMEALR-GKRRAFELFVAPGGSDRRLEKLLALAAEKGVPVRQRDKRDIAR 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + G E HQG+AL P L LL+VLD V DPHN+GA++RSA Sbjct: 61 LCGTE-HHQGVALRAEPFAYAQLSDILVPGTDGLLLVLDGVQDPHNLGALIRSAACAGAQ 119 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I + + +A + K+++GA+E IP ++N+ L+++ + GF G +S + Sbjct: 120 GVIIPRDRAVGVTATVEKASAGAIETIPVAEVTNVAHTLEELKNAGFWIYGADGESPLSI 179 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + L++G+EG+G+RP ++ + + + G + +LN S A + L+ Sbjct: 180 FDQKLTGAVVLVIGSEGEGIRPLVKKKCDFLVSIPLRGGVNSLNASVAGGILLFEVVRQR 239 Query: 281 AK 282 +K Sbjct: 240 SK 241 >gi|320160779|ref|YP_004174003.1| RNA methyltransferase [Anaerolinea thermophila UNI-1] gi|319994632|dbj|BAJ63403.1| RNA methyltransferase [Anaerolinea thermophila UNI-1] Length = 271 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 102/260 (39%), Gaps = 6/260 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALA 79 + K+++ ++ + + FL G+ V+ A ++ + Sbjct: 4 SPANEQVKRIRRLQER-KERERTGLFFLEGIRIVAEAAERGEAFETLIVSPDRLQSDFAW 62 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 +L + + P+ V +++ KE A+ + +V N + + LD Sbjct: 63 KLVENLRR-NGTPILEVSSLVFERLSQKEGPQGIAAVVHQRWMPLGAVSVENGKPWVALD 121 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N+G ILR+ A G+I + + +++ GAL + +R S Sbjct: 122 SVADPGNLGTILRTLDAVGGAGVILLDQSTDPYDPSCVRASMGALFDLHLVRTSFEQFRD 181 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 G IG S +K+ ++ L++G+E GL+P E + + M G Sbjct: 182 WIKRQTGVALIGTSGAAKQDYHDFPYPSRLVLLMGSERLGLQPYHLELCDEVVRIPMVGR 241 Query: 260 IKALNVSNAAAVALYITQNH 279 +LN++ A AV LY N Sbjct: 242 SDSLNLAVATAVVLYEIFNQ 261 >gi|254828578|ref|ZP_05233265.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|258600976|gb|EEW14301.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] Length = 252 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 57/278 (20%), Positives = 110/278 (39%), Gaps = 26/278 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K++++ + K + + + G H V A Sbjct: 1 MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +LL + +W L + V + + I ++ + QG+ A Sbjct: 42 LRQDG-LVLELLVSSGVSVPEEW---LKGDYDVFEISTE-ISHLISETMTEQGVFAVVAT 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L+++D V DP N+G ++R+A A D ++ K + + + +S Sbjct: 97 SE--PDMMLLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRST 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP I+ + + D K L K D +AL++G EG G+ Sbjct: 155 QGSHFHIPVIQANLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGI 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+ Q+ + ++ + G ++LNV+ AA + LY + Sbjct: 215 SPELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252 >gi|260870912|ref|YP_003237314.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O111:H- str. 11128] gi|257767268|dbj|BAI38763.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O111:H- str. 11128] gi|323176061|gb|EFZ61653.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1180] Length = 243 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L++LD V DPHN+GA LRSA A Sbjct: 62 SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELICIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|257060931|ref|YP_003138819.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8802] gi|256591097|gb|ACV01984.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8802] Length = 260 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 51/254 (20%), Positives = 104/254 (40%), Gaps = 4/254 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDA 85 + K+++ + +++ + L G H + A N S A + W+ Sbjct: 7 NPLVKQIRQLH-RTKGRREQNLLLFEGTHLLETACEVNCSLDCLCYTAQWQSRYPQLWEL 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 ++ V P+ + + +A + + + ++ ++L+ + DP Sbjct: 66 ATQKAQRIELVSPEVLQALATTVNPDGVIATAV--NPKISKPTIADFKIGLILERLQDPG 123 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+AVA DGI + ++ + +S++GA H+P I +L+ ++ + Sbjct: 124 NLGTIIRTAVATEIDGIWLSSDSVDIDNPKVLRSSAGAWFHVPLIVSCDLSATIKHYQAS 183 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G Q I + ++LG EG GL + A + + I++LNV Sbjct: 184 GVQVIATLPTATNTYWDVDLTQPSLILLGNEGAGLSEELASLADQTVSIPLGNTIESLNV 243 Query: 266 SNAAAVALYITQNH 279 + A A+ LY Q Sbjct: 244 AIACALLLYERQRQ 257 >gi|298368797|ref|ZP_06980115.1| RNA methyltransferase, TrmH family [Neisseria sp. oral taxon 014 str. F0314] gi|298282800|gb|EFI24287.1| RNA methyltransferase, TrmH family [Neisseria sp. oral taxon 014 str. F0314] Length = 262 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 95/280 (33%), Gaps = 22/280 (7%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M LI+ +++++ K + +++ L GVH + A Sbjct: 1 MKLITSAQNDRL------------------KYLSKLLSQAKARRASGQTVLEGVHLLQAY 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + R P + V + ++ + + T Sbjct: 43 LQAGLTPVQVYIPESKLQQREILALIAA--LPEQAVTSVANAALSRITSLSEADDIMTLI 100 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + DA + +VLD + DP N+G ++RSA A ++ + S + ++A Sbjct: 101 NIP-AQDAWPVNGDCVVLDRIQDPGNVGTVMRSAAAAGVGCLVVGIGSADVWSPKVLRAA 159 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GA + L + + T L + L + A I G EG G+ Sbjct: 160 MGAHFLLKIHTEVRLAQWISSYRDKVWATA-LHHQNNHNLYNLDLHQSAAWIFGNEGSGV 218 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + M G ++LNV+ AA V L+ Sbjct: 219 DDNILDQVSGCVRIPMAGKTESLNVAMAATVCLFEQMRQR 258 >gi|238923821|ref|YP_002937337.1| putative tRNA/rRNA methyltransferase [Eubacterium rectale ATCC 33656] gi|238875496|gb|ACR75203.1| putative tRNA/rRNA methyltransferase [Eubacterium rectale ATCC 33656] gi|291524576|emb|CBK90163.1| rRNA methylase, putative, group 3 [Eubacterium rectale DSM 17629] Length = 255 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 101/241 (41%), Gaps = 9/241 (3%) Query: 50 FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV-- 105 ++ G + V A + K+F L ++ + H + V + +D++ Sbjct: 13 YIEGRNAVLEAFRSGKTIDKLFVLDGCQDGPIKSITREARKHDAIINYVAKERLDQMSET 72 Query: 106 ----GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 G AV + + +++LD + DPHN+GAI+R+A G Sbjct: 73 GKHQGVIAVSAAYEYAEVSDILENAERKGEPPFIIILDGIEDPHNLGAIIRTANQAGAHG 132 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II KR + + +AK+++GA+ + P +++N+++ ++++ G + + Sbjct: 133 IIIPKRRAVGLTPTVAKTSAGAINYTPVAKVTNISNTIKELKEKGMWFVCA-DMGGTTMY 191 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 I L++G EG G+ +E A + M G I +LN S A V Y Sbjct: 192 DLNLTGPIGLVIGNEGDGVSKLVKENCDMTASIPMVGDIDSLNASVATGVLAYEIVRQRL 251 Query: 282 K 282 K Sbjct: 252 K 252 >gi|332982296|ref|YP_004463737.1| tRNA/rRNA methyltransferase SpoU [Mahella australiensis 50-1 BON] gi|332699974|gb|AEE96915.1| tRNA/rRNA methyltransferase (SpoU) [Mahella australiensis 50-1 BON] Length = 261 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 98/257 (38%), Gaps = 3/257 (1%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 + + K ++S S + F+ G + A+ +F + + + Sbjct: 3 ISDGNPRIKLVRSLA-SSHGRKKSGLYFIEGAKLIEEAIKANEDILFIVY-SSDFGDSTL 60 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + +V P I LA+ + LL+VLD V Sbjct: 61 LKLIIDRDIDNFSVLPDVFVNIADTATPQGVLAVLKQQQRDWHEIMMLEHCLLLVLDAVQ 120 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ++R+A A +I + + + + ++A G+ H+P L +AL ++ Sbjct: 121 DPGNVGTMIRTADAMGFSAVIAGRGTADQYNPKVLRAAMGSSFHMPVYNDVPLPEALTEL 180 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + +++ D+ A+I+G E +G+ K + A + MPG ++ Sbjct: 181 MERVSV-LAAVPRGGIDIDEAPLADRTAIIIGNEARGISDKVMDNAAYTVSIGMPGRAES 239 Query: 263 LNVSNAAAVALYITQNH 279 LN S AA + +Y Sbjct: 240 LNASIAAGIIMYEISRR 256 >gi|291528371|emb|CBK93957.1| rRNA methylases [Eubacterium rectale M104/1] Length = 263 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 93/256 (36%), Gaps = 4/256 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ K +Q+ K++ + + G A P + + +++ + Sbjct: 6 SNKSIKNVQALLSKAKERKKQGVFVVEGPKMSFEA---PYDWVSAVYMSESFFYDDRFKE 62 Query: 86 NLPHPF-PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + V + + LA+ P + L+VL+ + DP Sbjct: 63 EKKRFLDKTEIVSDSVFKSMSDTQTPQGVLAIVKMPHYEIDELFKGDKTELLVLESIQDP 122 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G ++R+ GII + + +S G+L +P+ +L + ++ S Sbjct: 123 GNLGTMIRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPFYITDDLPETIEYAKS 182 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G K ++ ++G EG GL + + A + + M G +++LN Sbjct: 183 KGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVESLN 242 Query: 265 VSNAAAVALYITQNHF 280 + +A + +Y Sbjct: 243 AAISATLLMYECNRQR 258 >gi|218245150|ref|YP_002370521.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801] gi|257058176|ref|YP_003136064.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 8802] gi|218165628|gb|ACK64365.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 8801] gi|256588342|gb|ACU99228.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 8802] Length = 292 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 16/275 (5%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL--- 72 + + + + S + N +YG H+V AAL + + + Sbjct: 17 QKPMVKRRLPSSPLI-----VAKPSPQEEEEANDLIYGRHSVLAALESDRQLNRIWITNK 71 Query: 73 ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---- 128 +A A + V Q ++++ HQG+A + AP L+ Sbjct: 72 LHYDARFHTLIQAAKAKGSVIDEVSIQRLNQLT-HGGNHQGVAAQVAPYAYHELETLIEQ 130 Query: 129 ---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 N ++++ D + DP N+GAI+R+A A G++ +R + ++ + K A+GALE Sbjct: 131 AKASSNEPVIVIADGIADPQNLGAIIRTAEALGTQGLVIPQRRAAGVTSTVIKVAAGALE 190 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 P R+ NL+ AL+ + GF G ++ K L I L++G+E GL T+ Sbjct: 191 SFPVARVVNLSRALETLKEAGFWIYGTAATGGKSLHNMELRGPIGLVIGSEESGLSLLTE 250 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + G +LN S AAA+ LY Sbjct: 251 RCCDQLISIPLTGKTPSLNASVAAAIVLYEVYRQR 285 >gi|254830028|ref|ZP_05234683.1| rRNA methylase [Listeria monocytogenes 10403S] Length = 252 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 57/278 (20%), Positives = 110/278 (39%), Gaps = 26/278 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K++++ + K + + + G H V A Sbjct: 1 MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +LL + +W L + V + + I ++ + QG+ A Sbjct: 42 LRQDG-LVLELLVSSGVSVPEEW---LKDDYDVFEISTE-ISHLISETMTEQGVFAVVAT 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L+++D V DP N+G ++R+A A D ++ K + + + +S Sbjct: 97 SE--PDMMLLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRST 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP I+ + + D K L K D +AL++G EG G+ Sbjct: 155 QGSHFHIPVIQANLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGI 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+ Q+ + ++ + G ++LNV+ AA + LY + Sbjct: 215 SPELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252 >gi|187928382|ref|YP_001898869.1| tRNA/rRNA methyltransferase SpoU [Ralstonia pickettii 12J] gi|187725272|gb|ACD26437.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia pickettii 12J] Length = 260 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 100/257 (38%), Gaps = 5/257 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ +K +++ + ++H + L GVH V A L+ + L+ R Sbjct: 6 SRDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVVAYLDAGHMPVQCLV--SERHVRHPE 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 A + TV + V G+ L + ++LD + D Sbjct: 64 VAAVLDRVDPDTVILLADNLFGQLTTVVNGVDLMALVETAEGKLPQTIDADCVILDGIQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G+ILR A A + T + + SA ++A GA H+ + ++ Sbjct: 124 AGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAAMGAHFHLNIVEHCTFQSVHSRLR 183 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + SS +K+ + + + + G EG G+ + T+ + PG +++L Sbjct: 184 VPL---LATSSHAKQAVFDVPLSSPVGWVFGNEGAGVSQEWLSAVTTPVTIPQPGGMESL 240 Query: 264 NVSNAAAVALYITQNHF 280 NV+ AAA+ L+ Sbjct: 241 NVAAAAAICLFEAVRQR 257 >gi|320638938|gb|EFX08584.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. G5101] Length = 243 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPH-PFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + L L ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESLGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L++LD V DPHN+GA LRSA A Sbjct: 62 SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|295108534|emb|CBL22487.1| rRNA methylase, putative, group 3 [Ruminococcus obeum A2-162] Length = 247 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 107/239 (44%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K+F L ++ R + V + +D++ Sbjct: 5 IEGRNAVLEAFRSGKCVDKLFILDGCQDGPVRTIAREARKTDTIINYVSKERLDQLSETR 64 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ + A T+D + L++LD+V DPHN+GAI+R+A G Sbjct: 65 A-HQGVIAQAAAYEYSTVDEILARAEEKGEPPFLILLDNVEDPHNLGAIIRTANLAGAHG 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR + ++ +AK+++GA+ + P +++N+ ++++ G + + + Sbjct: 124 VIIPKRRAVGLTSTVAKTSAGAINYTPVAKVTNIVRMIEELKEKGIWFVCA-DMGGEIMY 182 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L++G EG+G+ +E A + M G I +LN S AA V Y Sbjct: 183 DLDLTGPMGLVIGNEGEGVSRLVREACDFTASIPMKGDIDSLNASVAAGVLAYEIVRQR 241 >gi|146283972|ref|YP_001174125.1| RNA methyltransferase [Pseudomonas stutzeri A1501] gi|145572177|gb|ABP81283.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas stutzeri A1501] gi|327482300|gb|AEA85610.1| RNA methyltransferase [Pseudomonas stutzeri DSM 4166] Length = 251 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG+H V A L + +++ Q+ + ++ + V + +D V Sbjct: 7 IYGLHAVEALLRHHPKRVKQVWLAEGRGDPRVQVLIELAAQARVSVGQCERREMDAWV-- 64 Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P LD LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVADVSPSQVWGEAMLDELLDRAEGPPLLLVLDGVTDPHNLGACLRTADAAGAL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A + K A GA E IP + ++NL L+K+ G +G + ++++ L Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQKGLWVVGTAGEAEQSL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + I L++GAEG+G+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YAQDLTGPIVLVMGAEGRGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244 Query: 281 AK 282 + Sbjct: 245 GR 246 >gi|71891873|ref|YP_277602.1| tRNA/rRNA methyltransferase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71795979|gb|AAZ40730.1| probable tRNA/rRNA methyltransferase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 247 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 9/244 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V + L+N S +I + K+ +L D ++ + +D Sbjct: 2 SELVYGIHAVKSVLDNYSHRIVSVCIIQKSKDLRLKLLIDQIKQRRISIRECSRRQLDIQ 61 Query: 105 VGKEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + L + + LL++LD V DPHN+GA LRSA A Sbjct: 62 TQGALHQGIIVKIVPNDCMQENDLPNFLMQCKTTPLLVILDGVTDPHNLGACLRSADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S + + K ASG++++IP+++++NL LQ + + IG S++ Sbjct: 122 AHIVIAPRNRSACLNGTVRKVASGSVDNIPFMQVTNLIRTLQLLQKYNIWIIGTVMQSQR 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +A ++G+EG G+R TQ+ + + M G+ +LNVS A + L+ Sbjct: 182 LIFNSKLTRPLAFVMGSEGNGIRYLTQKKCDELVTIPMLGVATSLNVSVATGICLFEALR 241 Query: 279 HFAK 282 K Sbjct: 242 QRWK 245 >gi|302871991|ref|YP_003840627.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor obsidiansis OB47] gi|302574850|gb|ADL42641.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor obsidiansis OB47] Length = 270 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 52/284 (18%), Positives = 116/284 (40%), Gaps = 26/284 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 IS +++E I +K + ++ + + + G+ V A+ Sbjct: 7 EFISSRENECIKRVKKLNDK-------------------KYREEFRSFIIEGLKLVKEAI 47 Query: 62 NNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLA 115 N I ++ ++ A R L +K V P + + + + QG+ Sbjct: 48 NYQIECINLVIFSQQAKDRYQEFYWECKRLLEDGKIKRVIEVPDKLFEYIATTSTPQGIL 107 Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 E + ++ ++N + ++V D + DP N+G ++R A AF D ++TTK + Sbjct: 108 AECNFVDK-DINFIKNLKRVVVADKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPK 166 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 ++ G+L H+ +R + ++ + F + + + + + K +++G Sbjct: 167 TIRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKVVPDKKFCVVIGN 226 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E +G+ + A + M G ++LN + AA++ LY + Sbjct: 227 ESEGVSDSFAKVAARKIKIPMAGKAESLNAAVAASIVLYELRKR 270 >gi|237729114|ref|ZP_04559595.1| 23S rRNA 2'-O-methyltransferase [Citrobacter sp. 30_2] gi|226908843|gb|EEH94761.1| 23S rRNA 2'-O-methyltransferase [Citrobacter sp. 30_2] Length = 243 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 110/242 (45%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRK---IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + +F L ++ A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQDVFILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P L A + ++LD V DPHN+GA LRSA A Sbjct: 62 S-EGAVHQGIIARVKPGRQYQENDLPDLIATLDQPFFLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|218297027|ref|ZP_03497704.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23] gi|218242582|gb|EED09119.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23] Length = 262 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 98/258 (37%), Gaps = 8/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + K + + ++ + + + G V AL + + LL + A Sbjct: 5 SPKNPRVKALAALKER-KERERVGLFLVEGRREVERALQAGLKPVTVLLGPRATPAEE-- 61 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 L V + + + ++ +E Q +A+ P + + L++VL + Sbjct: 62 --ALAQG-EVLRLSEEALKRVSSRENPAQVIAVFPIPRRALKEVRLPQDPLVLVLLGLEK 118 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GAILRSA ++ + V+ S + + +A + + Sbjct: 119 PGNLGAILRSADGAGAHLVLVAEGVDLYSPQVIRN--STGVVFSLPVFPVAEEEAARFLE 176 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + + ++ +E +A +LGAE +GL + A + + M G +L Sbjct: 177 EKGLYPVAATPRGERVYWEEDYRRGVAFLLGAEDRGLPEVWLKRAQARVRIPMRGRADSL 236 Query: 264 NVSNAAAVALYITQNHFA 281 NV+ +AA+ LY + Sbjct: 237 NVAVSAALLLYEALRQRS 254 >gi|332971600|gb|EGK10550.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella kingae ATCC 23330] Length = 248 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 110/244 (45%), Gaps = 9/244 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102 +YG H ++A L + I +L +N A R + + ++ Sbjct: 2 SNQRLIYGFHAINARLWQNPKSITELYVLENKADARTREVLEKAAAENVKLHFADQDRLN 61 Query: 103 KIVGKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + K A HQG+ L LD +R L+VLD + DPHN+GA LR+A A Sbjct: 62 TMA-KGARHQGVVGFIDASKNHVHLEDVLDNLREPAFLLVLDGITDPHNLGACLRTADAM 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K S +A ++K A GA E +PYI ++NL L+++ G +G Sbjct: 121 GVHAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKECGIWVVGTDMGGD 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L +A ++G EG G+R T+E ++ + M G ++++N+S +A + L T+ Sbjct: 181 ADLFHYDIPQSVAWVMGNEGDGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVLAETR 240 Query: 278 NHFA 281 Sbjct: 241 RQRT 244 >gi|289434467|ref|YP_003464339.1| RNA methyltransferase, TrmH family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170711|emb|CBH27251.1| RNA methyltransferase, TrmH family [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 252 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 105/278 (37%), Gaps = 26/278 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K++++ + K + + + G H V A Sbjct: 1 MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + +LL +K +W L + + + + I A+ T Sbjct: 42 IRQDGLVV-ELLVSKGVSVPEEW---LKGNYDIFEISTEISHFISETMTEQGVFAVVTTT 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + L+++D V DP N+G ++R+A A D +I + + + + +S Sbjct: 98 EPDMMLLYGKK---LLLVDAVQDPGNVGTLIRTADAAGYDAVILGRGSADLYNPKVIRST 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP I+ + + + K L K D +ALI+G EG G+ Sbjct: 155 QGSHFHIPVIQANLFDWIANLEEEGVPVIGAVLDEQAKSLNDISKRDTLALIVGNEGNGI 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q + ++ + G ++LNV+ AA + LY + Sbjct: 215 SEELQARLSEKVYIPIYGKSESLNVAVAAGILLYGLRK 252 >gi|212212578|ref|YP_002303514.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuG_Q212] gi|212010988|gb|ACJ18369.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuG_Q212] Length = 270 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 119/240 (49%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107 +YG+H VSA L+ ++I +L +N RL V + ++ + + Sbjct: 27 IYGIHAVSAVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKGLGVKVILLSRTELNTLSNE 86 Query: 108 EAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+ + + + L LL++LD V DPHN+GA LRSA AF Sbjct: 87 K--HQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR 144 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K + + V+ K A GA E P+IR++NL+ + + G +G + +++ + Sbjct: 145 AVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLI 204 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ IA++LG+EG GLR T+E +A + + G +++LNVS A + LY Q Sbjct: 205 QEIDLTGDIAIVLGSEGGGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQR 264 >gi|270293024|ref|ZP_06199235.1| RNA methyltransferase, TrmH family protein [Streptococcus sp. M143] gi|270279003|gb|EFA24849.1| RNA methyltransferase, TrmH family protein [Streptococcus sp. M143] Length = 253 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 122/246 (49%), Gaps = 9/246 (3%) Query: 42 HTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT 100 + N +YGVH V+ AL N K++ + + + ++ Sbjct: 9 NRDMKTNDIVYGVHAVTEALLANTGNKLYLQDDLRGKNVEKVKELAAEKKVSISWTSKKS 68 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSA 154 + ++ + AVHQG L + L+ + LL++LD + DPHN+G+ILR+A Sbjct: 69 LSEMT-EGAVHQGFVLRVSEFAYSELEHILAKTRQEENPLLLILDGLTDPHNLGSILRTA 127 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A + G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G Sbjct: 128 DATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDM 187 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 188 NGTPCHKWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMY 246 Query: 275 ITQNHF 280 + Sbjct: 247 EVFRNR 252 >gi|16803258|ref|NP_464743.1| hypothetical protein lmo1218 [Listeria monocytogenes EGD-e] gi|46907437|ref|YP_013826.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str. F2365] gi|47092017|ref|ZP_00229811.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 4b H7858] gi|47095060|ref|ZP_00232673.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 1/2a F6854] gi|217964716|ref|YP_002350394.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes HCC23] gi|224499109|ref|ZP_03667458.1| rRNA methyltransferase, TrmH family protein [Listeria monocytogenes Finland 1988] gi|224502486|ref|ZP_03670793.1| rRNA methyltransferase, TrmH family protein [Listeria monocytogenes FSL R2-561] gi|226223818|ref|YP_002757925.1| rRNA methylase [Listeria monocytogenes Clip81459] gi|254823528|ref|ZP_05228529.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|254852912|ref|ZP_05242260.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|254898621|ref|ZP_05258545.1| rRNA methylase [Listeria monocytogenes J0161] gi|254911890|ref|ZP_05261902.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254932904|ref|ZP_05266263.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|254936215|ref|ZP_05267912.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|254991828|ref|ZP_05274018.1| rRNA methylase [Listeria monocytogenes FSL J2-064] gi|255522191|ref|ZP_05389428.1| rRNA methylase [Listeria monocytogenes FSL J1-175] gi|284801538|ref|YP_003413403.1| hypothetical protein LM5578_1291 [Listeria monocytogenes 08-5578] gi|284994680|ref|YP_003416448.1| hypothetical protein LM5923_1244 [Listeria monocytogenes 08-5923] gi|300764367|ref|ZP_07074361.1| TrmH family RNA methyltransferase [Listeria monocytogenes FSL N1-017] gi|16410634|emb|CAC99296.1| lmo1218 [Listeria monocytogenes EGD-e] gi|46880705|gb|AAT04003.1| RNA methyltransferase, TrmH family [Listeria monocytogenes serotype 4b str. F2365] gi|47016678|gb|EAL07598.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 1/2a F6854] gi|47019733|gb|EAL10472.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 4b H7858] gi|217333986|gb|ACK39780.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes HCC23] gi|225876280|emb|CAS04989.1| Putative rRNA methylase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606248|gb|EEW18856.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|258608805|gb|EEW21413.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|284057100|gb|ADB68041.1| hypothetical protein LM5578_1291 [Listeria monocytogenes 08-5578] gi|284060147|gb|ADB71086.1| hypothetical protein LM5923_1244 [Listeria monocytogenes 08-5923] gi|293584458|gb|EFF96490.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|293589848|gb|EFF98182.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|293592748|gb|EFG00509.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|300515019|gb|EFK42072.1| TrmH family RNA methyltransferase [Listeria monocytogenes FSL N1-017] gi|307570723|emb|CAR83902.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes L99] gi|313609196|gb|EFR84870.1| RNA methyltransferase [Listeria monocytogenes FSL F2-208] gi|328466614|gb|EGF37749.1| RNA methyltransferase, TrmH family [Listeria monocytogenes 1816] gi|332311603|gb|EGJ24698.1| RNA methyltransferase [Listeria monocytogenes str. Scott A] Length = 252 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 57/278 (20%), Positives = 109/278 (39%), Gaps = 26/278 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K++++ + K + + + G H V A Sbjct: 1 MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +LL + +W L + V + + I ++ + QG+ A Sbjct: 42 LRQDG-LVLELLVSSGVSVPEEW---LKGDYDVFEISTE-ISHLISETMTEQGVFAVVAT 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L+++D V DP N+G ++R+A A D ++ K + + + +S Sbjct: 97 SE--PDMMLLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRST 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP I+ + D K L K D +AL++G EG G+ Sbjct: 155 QGSHFHIPVIQADLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGI 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+ Q+ + ++ + G ++LNV+ AA + LY + Sbjct: 215 SPELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252 >gi|255036422|ref|YP_003087043.1| RNA methyltransferase, TrmH family, group 3 [Dyadobacter fermentans DSM 18053] gi|254949178|gb|ACT93878.1| RNA methyltransferase, TrmH family, group 3 [Dyadobacter fermentans DSM 18053] Length = 256 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 61/256 (23%), Positives = 107/256 (41%), Gaps = 10/256 (3%) Query: 34 QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV 93 + + + Q + ++G +V L + I +L + P Sbjct: 4 RKYTVRKPAPKQSQADMVFGTQSVLETLRSGKE-IERLFIQREFGLAEIEKLAKELGVPY 62 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHN 146 + VP + ++++ HQG+ +P+ L + LL++LD V D N Sbjct: 63 QRVPVEKLNRVT--RKNHQGVIAFVSPIQYMPLHNVLTQVYEDGKTPLLLLLDRVTDVRN 120 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 GAI R+A II + +A K++SGAL +P R NL + L + + G Sbjct: 121 FGAIARTAECAGVQAIIVPTKGGAQINADAMKTSSGALNFLPICREPNLYETLTYLRNSG 180 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 Q I + + K L +I+G+E G+ + + A S A + + G +++LNVS Sbjct: 181 LQIIACTEKTDKSLYDIDFTVPTVIIMGSEEDGISKEFIDLADSGARIPLAGQVESLNVS 240 Query: 267 NAAAVALYITQNHFAK 282 A++V LY K Sbjct: 241 VASSVVLYEAVRQRIK 256 >gi|88798926|ref|ZP_01114508.1| hypothetical protein MED297_12747 [Reinekea sp. MED297] gi|88778406|gb|EAR09599.1| hypothetical protein MED297_12747 [Reinekea sp. MED297] Length = 252 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 124/249 (49%), Gaps = 14/249 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTID 102 E+L++YG+H V +AL+N ++ ++L K +A + D + V D Sbjct: 2 SESLWIYGLHAVFSALDNHPERVKEVLLLKGRDDARMKKLLDQVTEVGVRYRLVSRDDFD 61 Query: 103 KIVGKEAV----HQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 + + K+ + HQG+ T L LD + LL+VLD V DPHNIGA L Sbjct: 62 RTLHKQQLKDIRHQGVLALTTAAPVLKENDLEALLDNLEEPPLLLVLDGVTDPHNIGACL 121 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+ A G+I K S + +A K ASGA + +P+ ++NL L+++ G G Sbjct: 122 RTCDAAGAHGLIVPKDKSATLTATAVKIASGATDTVPFFAVTNLARTLEELKQRGIWVYG 181 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + ++ + Q IAL++GAEGKGLR T+E + H+ M G + +LNVS AA V Sbjct: 182 TAGEASSEIYQNRLQGPIALVMGAEGKGLRRLTREVCDELIHIPMAGDVSSLNVSVAAGV 241 Query: 272 ALYITQNHF 280 L+ Sbjct: 242 CLFEVVRQR 250 >gi|16763188|ref|NP_458805.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144667|ref|NP_808009.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213021981|ref|ZP_03336428.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213417716|ref|ZP_03350838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213648977|ref|ZP_03379030.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|52783319|sp|Q8Z182|RLMB_SALTI RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|25316741|pir||AI1049 probable tRNA/rRNA methyltransferase (EC 2.1.1.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505496|emb|CAD06846.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29140306|gb|AAO71869.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 243 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + + K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEAFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P L A+ + L++LD V DPHN+GA LRSA A Sbjct: 62 SD-GAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 Sbjct: 241 QRT 243 >gi|315281992|ref|ZP_07870501.1| RNA methyltransferase [Listeria marthii FSL S4-120] gi|313614371|gb|EFR88006.1| RNA methyltransferase [Listeria marthii FSL S4-120] Length = 252 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 108/278 (38%), Gaps = 26/278 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K++++ + K + + + G H V A Sbjct: 1 MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +LL + +W L + V + I ++ + QG+ A Sbjct: 42 LRQDG-LVLELLVSSGVSVPEEW---LKGDYDVFEIS-AEISHLISETMTEQGVFAVVAT 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L+++D V DP N+G ++R+A A D ++ + + + + +S Sbjct: 97 SE--PDMMLLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVVLGRGSADLYNPKVIRST 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP I+ + D K L K + +AL++G EG G+ Sbjct: 155 QGSHFHIPVIQADLFDWIANLEEEGVPVIGAVLDDQAKSLNDMPKRETLALMVGNEGNGI 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+ Q+ + ++ + G ++LNV+ AA + LY + Sbjct: 215 SPELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252 >gi|293393205|ref|ZP_06637520.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Serratia odorifera DSM 4582] gi|291424351|gb|EFE97565.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Serratia odorifera DSM 4582] Length = 243 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R ++ Q +D Sbjct: 2 SEIIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPLIAELEATGIVIQVANRQWLDDK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 V +A D ++ L+VLD V DPHN+GA LRSA A Sbjct: 62 VEGAVHQGIVARVREGRQYQENDLPGLLESVDTPFLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A K A GA E++P IR++NL L+ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQELNVWVVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELIGIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|299535511|ref|ZP_07048832.1| putative tRNA/rRNA methyltransferase [Lysinibacillus fusiformis ZC1] gi|298728711|gb|EFI69265.1| putative tRNA/rRNA methyltransferase [Lysinibacillus fusiformis ZC1] Length = 254 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 92/274 (33%), Gaps = 24/274 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + K + + + + G H V A Sbjct: 1 MKRIESTQ------------------NALVKYWKKLATTRKERERSGEFLVEGFHLVEEA 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L N ++ Q++ + + W + + V + E A Sbjct: 43 LKN-KNQVLQIIVREGIDLPMLWPID---DIAIVEVSTAVAKEFAETETSQGVFA--VCK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + ++++D V DP NIG ++R+A A D +I K + + ++A Sbjct: 97 QPVLVDNVMTTWRKVLLIDAVQDPGNIGTMIRTADAADLDAVILGKGCADLYNPKTLRAA 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP +R + P A+I+G EG G+ Sbjct: 157 QGSHFHIPVVRGDLAEWIDILQDQGVPVFGTALDEEAVPYSDIQHTGAFAIIMGNEGSGI 216 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +P+ + + G ++LNV+ A + LY Sbjct: 217 QPQLLAMTDQNMIIPLFGQAESLNVAVATGIVLY 250 >gi|319407391|emb|CBI81042.1| tRNA/rRNA metyltransferase [Bartonella sp. 1-1C] Length = 272 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 138/270 (51%), Positives = 182/270 (67%), Gaps = 5/270 (1%) Query: 15 LKDSHYAKLRRNHRDYK----KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 LKDSHYA+LRR +R+ K + ++ ++ Q E ++LYG+H V AAL NP R + Sbjct: 2 LKDSHYARLRRRYRNTKGSFFQSTTYVKQPPIPLQKEQIYLYGIHPVHAALKNPRRVLRH 61 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 L AT NAL RL + + PV + P+ ++ VG+EAVHQG+ LET PL S L + Sbjct: 62 LYATPNALKRLGINESNIA-CPVTSCLPKKLEMFVGREAVHQGIVLETEPLKSRPLSELT 120 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N+ L++++D + DPHN+GAI+RSAVAF IITT R+SP ES VLAK+ASGALE I YI Sbjct: 121 NTDLIIIMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEYI 180 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + NL LQ++H F + GL S+ K PLE +K KI+LILGAEGKGLR KT+E A S Sbjct: 181 TVRNLFKTLQELHQMNFISFGLDSEGKFPLETALKGTKISLILGAEGKGLRQKTRENAYS 240 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A L +PG IK+LNVSNAAA+ALY + Sbjct: 241 LARLDLPGDIKSLNVSNAAAIALYAVHKYL 270 >gi|227821738|ref|YP_002825708.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium fredii NGR234] gi|227340737|gb|ACP24955.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium fredii NGR234] Length = 291 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 137/275 (49%), Positives = 184/275 (66%), Gaps = 13/275 (4%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQS--FNQKSRHTSQ-----------PENLFLY 52 K S +DSHYA LRR HRD ++ + + + P+ +FLY Sbjct: 2 SKDKSGDKSARDSHYATLRRAHRDARRERGEIPTPRPDKRRKLPADWKPPALAPDEVFLY 61 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+HTV AAL+NP R I +L T+NA ARL+ FPV+ V PQ +D+ +G +A+HQ Sbjct: 62 GLHTVRAALDNPDRTIIRLRVTQNAAARLELGDLSALRFPVEIVTPQDLDRALGPDAIHQ 121 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G+ LET PL L+A+ + L+++LD V DPHN+GAI+RSAVAF +ITT R+SP+E Sbjct: 122 GVMLETRPLPHRKLEALSDCPLILLLDQVTDPHNVGAIMRSAVAFEAGALITTMRHSPTE 181 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 S VLAKSASGALE IPYI+I+NL D ++++H GFQTIGL S+ +PLE K+AL+ Sbjct: 182 SGVLAKSASGALELIPYIQITNLADTIEELHKLGFQTIGLDSEGPQPLEDTFSGGKVALV 241 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 LG+EGKGLR KT++T T++A L MPG IK+LNVSN Sbjct: 242 LGSEGKGLRQKTRQTVTALARLDMPGAIKSLNVSN 276 >gi|89893016|ref|YP_516503.1| hypothetical protein DSY0270 [Desulfitobacterium hafniense Y51] gi|89332464|dbj|BAE82059.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 285 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 50/287 (17%), Positives = 99/287 (34%), Gaps = 29/287 (10%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 ++++ ++E++ + + H K + + + G V L Sbjct: 14 DMLTSLQNEQVKYVVNLH-------------------KRKFREENGEFLIEGWRFVEEGL 54 Query: 62 NNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 + K+F KN +A PV V + + K+ E LA+ Sbjct: 55 ARGAHLTKVFFCSECKNESWPQLAEALKVKGVPVIEVDERVLRKMSDTENPQGILAVVKQ 114 Query: 120 PLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 + +L++LD V DP N G ILR+A+A + T+ Sbjct: 115 SRWTWDDFIEIVNPAGRSAIPMLLILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDLY 174 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + + +S GA+ + + L+ S ++ + +AL+ Sbjct: 175 NLKVLRSTMGAIFSLNIATHCQPEEILKVCRSHKIPVFVGDAEGTDLY-ETHFAQPMALV 233 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +G EG G + + M +++LNV+ A + LY + Sbjct: 234 VGNEGNGPSAAFRGPGVKRITIPMSHQVESLNVAMATGIILYEVRRR 280 >gi|88810597|ref|ZP_01125854.1| RNA methyltransferase, TrmH family, group 3 [Nitrococcus mobilis Nb-231] gi|88792227|gb|EAR23337.1| RNA methyltransferase, TrmH family, group 3 [Nitrococcus mobilis Nb-231] Length = 256 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 108/240 (45%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G+H+V AA+ + ++ + A + PV V + +D++ Sbjct: 6 IIHGLHSVRAAVRYDPTHVVEVWLDRQARSGRWQALRRQLEALACPVHLVDRRQLDRLTS 65 Query: 107 KEAVH------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + G L L + LL+VLD V DPHN+GA LR+A Sbjct: 66 GQVHQGVAIRYAGQPPRAEHELEALLSELGPDPLLLVLDQVQDPHNLGACLRTAAGAGVQ 125 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +IT + + + + K+A+GA++HIP +++NL L+K+ G IG + + L Sbjct: 126 AVITPRDRAVGLTPTVYKAATGAVQHIPLFQVTNLARTLRKLREAGMWLIGAAEQADVTL 185 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + L++GAE GLR T+ + + M G I +LNVS A V LY Sbjct: 186 YEVDLSGPLVLVMGAEEAGLRRLTRACCDRLIRIPMLGAIDSLNVSVATGVVLYEVVRQR 245 >gi|331085693|ref|ZP_08334776.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406616|gb|EGG86121.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 251 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K+F L ++ R H + V + +D++ + Sbjct: 14 IEGRNAVLEAFRSGKPVDKLFVLDGCQDGPVRTIVREAKKHDTILNFVSKERLDQLS-ET 72 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ A ++ + ++LD++ DPHN+GAI+R+A G Sbjct: 73 GKHQGVIAHAAAYEYSEIEDMFALAEKRGEDPFFILLDNIEDPHNLGAIIRTANLAGAHG 132 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR + +A +AK+++GAL + P +++NL ++++ G + + Sbjct: 133 VIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKERGLWFVCADMGGESMYR 192 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 193 MN-LTGPIGLVIGNEGEGVSRLVKEKCDFVASIPMKGDIDSLNASVAAGVLAYEIVRQR 250 >gi|323340004|ref|ZP_08080270.1| TrmH family RNA methyltransferase [Lactobacillus ruminis ATCC 25644] gi|323092510|gb|EFZ35116.1| TrmH family RNA methyltransferase [Lactobacillus ruminis ATCC 25644] Length = 255 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 105/274 (38%), Gaps = 23/274 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M++I+ ++++ K + + + L G H V A Sbjct: 1 MDIITSSSNQRVKDWKKL-------------------SQKKARIKQGKYMLDGWHLVKEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + I ++L T++ R + +P V + + + G+ Sbjct: 42 ILFD-QPISEILVTQDFKHR--NELEVPDNVEVIEISDNVAKHLSETPSPQ-GIFAVVNL 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + + LD V DP NIG ++R+A A G++ + + + ++ Sbjct: 98 PENAEEKPKKATGAWLFLDGVQDPGNIGTMVRTADACGFSGVVFGEGCADMFQPKVVRAM 157 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+ + + A + +D + +Q ++ AL++G EG G+ Sbjct: 158 QGSQFHLKLCSGNLIEWAKEFKQRKLPVFGSELNDQARSYDQVGRHSDFALVMGNEGNGM 217 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K + + ++ + G ++LNV+ AA + ++ Sbjct: 218 SEKLLKETSLNLYIPIKGHAESLNVAVAAGILMF 251 >gi|262281995|ref|ZP_06059764.1| RNA methyltransferase [Streptococcus sp. 2_1_36FAA] gi|262262449|gb|EEY81146.1| RNA methyltransferase [Streptococcus sp. 2_1_36FAA] Length = 243 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNT-TGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|332827813|gb|EGK00548.1| hypothetical protein HMPREF9455_03191 [Dysgonomonas gadei ATCC BAA-286] Length = 263 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 94/282 (33%), Gaps = 23/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ +I ++ K++ + + G +S A Sbjct: 1 MEKITSLQNPRIKNITKL-------------------AKNKERKEQNLFLIEGARELSLA 41 Query: 61 LNNPSRKIFQLLATKNALAR--LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 + I + + + + V +KI +E L L Sbjct: 42 MTADYE-INSVYVCPELFRKTDYPDVLDSIGENKLFEVSEAVFEKIAYREGSDGLLTLAV 100 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + + + +++L+ V P N+GAILR+A A D +I + A Sbjct: 101 PKNHTLKDLQLSENPFIIILEAVEKPGNLGAILRTADAAQADAVIIC-DPATDLYNPNAI 159 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 +S + + DAL + ++ + + + + A+++G E Sbjct: 160 RSSVGCLFTVKTAVCSSRDALDFLRHKKIKSFAAELQASQWYQDTDFSIPSAIVMGTEAD 219 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 GL A + + M G I +LNVS + AV + Sbjct: 220 GLTDFWLTNADARIKIPMRGKIDSLNVSVSTAVLTFEAMRQR 261 >gi|323702099|ref|ZP_08113767.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans DSM 574] gi|323532981|gb|EGB22852.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans DSM 574] Length = 264 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 103/259 (39%), Gaps = 4/259 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK---IFQLLATKNALARLD 82 + K ++ Q++ + L + GV V AL + R ++ A +N Sbjct: 7 QNPKIKYIRRLAQRN-FREKERKLVVEGVRLVEEALQSGWRTESFVYTYEAVQNERGSRL 65 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + V + ++ E LA+ P L++V+D V Sbjct: 66 LELAQRKCAQTYQVTAHIMSQLSDTETPQGVLAVLWQPDYVLADVLPGQPPLVVVVDGVQ 125 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+RSA A G++ K + ++ G+L H+P ++ ++ AL + Sbjct: 126 DPGNLGTIVRSADAAGASGVLLLKGTVDIYNPKTIRATMGSLFHLPVVKAEDVDGALAYL 185 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 S G I +P+ + +A+++G EG G R ++ MPG ++ Sbjct: 186 ASAGVTLIVGDPVLGEPIFKANLKVPVAIMVGNEGAGPRADLDRFKHVKVNIPMPGRAES 245 Query: 263 LNVSNAAAVALYITQNHFA 281 LNV+ A ++ LY Sbjct: 246 LNVAMATSIMLYEAVRQRT 264 >gi|332878309|ref|ZP_08446035.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683760|gb|EGJ56631.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 269 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 56/283 (19%), Positives = 107/283 (37%), Gaps = 22/283 (7%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS + + KK+ + ++K+R + + G V A Sbjct: 1 MKEISSTQ------------------NPLIKKIFALSEKARMRKKEGLCVIEGAREVRLA 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 + I LL L P V + + +++ + + +A+ Sbjct: 43 IQ-GGYDIETLLFQPEIFKEEALQQLLALYRKPIEVIRLSKEVYERLSYRSSTEGLIAVA 101 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 P + A+R +L+V + P NIGA+LR+A A + +G+I + + + Sbjct: 102 KTPPHTLEALALRERSILLVAEAPEKPGNIGAMLRTADAANIEGVIIANPKTDLYNPNII 161 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +++ G + +P S S SK E A+++G E Sbjct: 162 RASVGCVFTVPIAVGSTTEVIDYLKKKDFNIYCAALSASKPYYEVPFAEKNTAIVVGTED 221 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +GL + + +T + M G+I ++NVS AAAV ++ + Sbjct: 222 EGLTQEWLKNSTQNIIIPMEGVIDSMNVSVAAAVLIFEAKKMR 264 >gi|322374580|ref|ZP_08049094.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. C300] gi|321280080|gb|EFX57119.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. C300] Length = 253 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 15 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 73 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 74 EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 133 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 134 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDQGFWTFGTDMNGTPCH 193 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 194 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252 >gi|225376828|ref|ZP_03754049.1| hypothetical protein ROSEINA2194_02470 [Roseburia inulinivorans DSM 16841] gi|225211324|gb|EEG93678.1| hypothetical protein ROSEINA2194_02470 [Roseburia inulinivorans DSM 16841] Length = 284 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 100/255 (39%), Gaps = 6/255 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ K + +K++ ++ E + G P + Q+ +++ A D Sbjct: 18 SNQQMKNLMLLMKKAKARNEQELFVVEGRKMFQEV---PEEWLKQVYVSESFFAENDKML 74 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + + V + + L L P L++L+ + DP Sbjct: 75 A---GYTYEIVSDSVFKAVSDTQTPQGILCLVRKPQYRLEELLKGADTHLLILESIQDPG 131 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G +LR+ G++ + +S G++ +P+ +L + + ++ + Sbjct: 132 NLGTMLRTGEGAGISGVVMNHTTVDLFNPKTIRSTMGSIYRMPFFVTRDLAETICELKNA 191 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G +T K ++ A ++G EG GL +T + A + + M G +++LN Sbjct: 192 GVKTYAAHLKGKMQYDEPDYTGATAFMIGNEGNGLSDETADLADTYIKIPMCGQVESLNA 251 Query: 266 SNAAAVALYITQNHF 280 + +A++ +Y T Sbjct: 252 AISASLLMYETNRQR 266 >gi|299067280|emb|CBJ38477.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum CMR15] Length = 249 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 76/239 (31%), Positives = 118/239 (49%), Gaps = 7/239 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 L G H V+A L + +R I ++ N R D A + + + I G Sbjct: 6 LLIGFHAVTARLRHDARSIDEIYFEANRRDRRMQDFLKAAEAAGVRMIPADNERLRGIAG 65 Query: 107 KEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A A L LD + LL+VLD V DPHN+GA LR A A + Sbjct: 66 TDRHQGVVAKAEALSLALNLDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + +AK ASGA E +PYI ++NL L+++ G IG + ++++ L + Sbjct: 126 IAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQDLYR 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 IAL++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ + Sbjct: 186 ADFKGPIALVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRS 244 >gi|283795501|ref|ZP_06344654.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1] gi|291077166|gb|EFE14530.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1] Length = 278 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 49/267 (18%), Positives = 110/267 (41%), Gaps = 15/267 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K++ + +K++ + + G S P ++ + T++ L + +A Sbjct: 6 SNSQVKQVSAIAKKAKARRESGLFIVEGEKMFSEL---PKERLHRTYVTESFLRQQGEEA 62 Query: 86 -NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-----------PTLDAVRNSQ 133 L +TV + + + + LAL + Sbjct: 63 DRLLAGCRYETVTGEVMKAMADTQTPQGILALCRQFSYELSDILGERKEGDEHTQEKAPA 122 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++L+ + DP N+G ILR+ G+I + + + +S G++ +P++ + Sbjct: 123 QLVILETLQDPGNLGTILRAGEGAGITGVIMNSTTADIYNPKVIRSTMGSVYRVPFVYVE 182 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +L DA++++ G + +K +Q+ ++G E GL +T E A + Sbjct: 183 DLADAVRRVKQAGVRLYAAHLKGEKNYDQQDYTGSTGFLIGNEANGLSDETAELADAYIK 242 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 + M G +++LN + AA++ +Y T Sbjct: 243 IPMLGKVESLNAAVAASILMYETARQR 269 >gi|186685767|ref|YP_001868963.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102] gi|186468219|gb|ACC84020.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102] Length = 258 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 95/258 (36%), Gaps = 7/258 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL--ARLDW 83 + K+++ + ++ + + L G H + A + + T + W Sbjct: 6 QNSLVKQIRKLH-STKERHKQQLFLLEGTHLLEEACAVNY-PLETVCCTSDWQAAHSSLW 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + V + ++ I +A L + L++ L+ V D Sbjct: 64 EKASSKSDRTEIVSEEVLNAIATTVQPDGVVATAKRTDSQTQL---PFTGLVLALETVQD 120 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+R+A A G+ + +S + ++++G + NL +Q+ Sbjct: 121 PGNLGTIIRTAAAVGASGLWVSGDSVDLDSPKVLRASAGQWFRLAMSVTENLKATVQQSQ 180 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G Q + + ++LG EG GL A + + +++L Sbjct: 181 QAGMQVVATLPSATLTYWDVDWRKPSLILLGNEGAGLSADLAAIADKQVRIPLSPGVESL 240 Query: 264 NVSNAAAVALYITQNHFA 281 NV+ AAA+ LY + + Sbjct: 241 NVAIAAALMLYEARRQMS 258 >gi|149007272|ref|ZP_01830930.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP18-BS74] gi|307126973|ref|YP_003879004.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae 670-6B] gi|147761076|gb|EDK68044.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP18-BS74] gi|306484035|gb|ADM90904.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae 670-6B] Length = 242 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL L K+ GF T G + Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLNQTLYKLKDEGFWTFGTDMNGTPCH 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|157147848|ref|YP_001455167.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter koseri ATCC BAA-895] gi|157085053|gb|ABV14731.1| hypothetical protein CKO_03652 [Citrobacter koseri ATCC BAA-895] Length = 243 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRK---IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + +F L ++ A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQDVFILKGREDKRLLPLIHALEAQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ P L A ++ L++LD V DPHN+GA LRSA A Sbjct: 62 S-EGAVHQGIIARVKPGRQYQENDLPDLIAKFDNPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRLLQEENIWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 181 TLFQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|315274658|ref|ZP_07869498.1| RNA methyltransferase, TrmH family, group 3 [Listeria marthii FSL S4-120] gi|313615715|gb|EFR89003.1| RNA methyltransferase, TrmH family, group 3 [Listeria marthii FSL S4-120] Length = 251 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 13/248 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99 + E ++ G + V L + R I ++ + + + V+ VP Q Sbjct: 2 EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLALAKERKIQVQFVPKQ 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152 I+K+V HQG+A + A LD ++LD + DPHN+G+I+R Sbjct: 61 KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A + GII KR S + +AK+++GA+E++P +R++N+ ++++ G G Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +A+++G+EG G+ +E + HL M G + +LN S AA++ Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238 Query: 273 LYITQNHF 280 LY Sbjct: 239 LYEVYRKR 246 >gi|295098333|emb|CBK87423.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 243 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 61/241 (25%), Positives = 103/241 (42%), Gaps = 8/241 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLMPLIHALEAQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + ++LD V DPHN+GA LRSA A Sbjct: 62 SEGAVHQGIIARVKPGRQYQENDLPDLIAGLENPFFLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 F 280 Sbjct: 242 R 242 >gi|325661898|ref|ZP_08150519.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA] gi|325471876|gb|EGC75093.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA] Length = 251 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 106/239 (44%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K+F L ++ R H + V + +D++ + Sbjct: 14 IEGRNAVLEAFRSGKPVDKLFVLDGCQDGPVRTIVREAKKHDTILNFVSKERLDQLS-ET 72 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ A ++ + ++LD++ DPHN+GAI+R+A G Sbjct: 73 GKHQGVIAHAAAYEYSEIEDMFALAEKRGEDPFFILLDNIEDPHNLGAIIRTANLAGAHG 132 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR + +A +AK+++GAL + P +++NL ++++ + G + + Sbjct: 133 VIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKARGLWFVCADMGGESMYR 192 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 193 MN-LTGPIGLVIGNEGEGVSRLVKEKCDFVASIPMKGDIDSLNASVAAGVLAYEIVRQR 250 >gi|70734080|ref|YP_257720.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5] gi|68348379|gb|AAY95985.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas fluorescens Pf-5] Length = 254 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 116/240 (48%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ + ++ D + V + +D V Sbjct: 7 IYGVHAVEALLRHHPKRVKQIWLAEGRSDPRVQVLVDLAAQNRVSVGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P LD + LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRTADAAGAL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S + + + K A GA E IP + ++NL L+K+ G +G + ++++ L Sbjct: 125 AVLVPKDKSATLTPTVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWIVGTAGEAEQEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YDQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEAMRQR 244 >gi|303228816|ref|ZP_07315630.1| RNA methyltransferase, TrmH family [Veillonella atypica ACS-134-V-Col7a] gi|302516528|gb|EFL58456.1| RNA methyltransferase, TrmH family [Veillonella atypica ACS-134-V-Col7a] Length = 264 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 107/273 (39%), Gaps = 10/273 (3%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67 +S KI ++ ++++ K + S Q+ ++ + + G+ V+ Sbjct: 2 ESPKIDYIQ-------SKDNKTIKHIISLQQR-KYRQKFGEYTVEGIRAVTDIGK--KDF 51 Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 + +L ++ + L+ V I + QG+ ++ Sbjct: 52 LRSILIRESKRSELEPLVQKGFTVSSVYVVQDPIFDKIEHSVNGQGILGIAKKCVNDLHS 111 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + L + LD V DP N+G I+R+AVA GI K + +S AL +I Sbjct: 112 LIVEDGLYVALDGVQDPGNLGTIIRTAVAAGAKGIFLLKGTVDPYNEKCVRSTMSALCNI 171 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P L++ + +T S ++ KP + +ILG EG G+ + E Sbjct: 172 PIFEDVTLSEFYDFIKDNTIKTYVTSLENAKPYHTISYPKRTMIILGNEGNGVSREIIEM 231 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G I++LNVS AAA+ +Y + Sbjct: 232 CDQAITIPMYGDIESLNVSIAAALCMYKVREQI 264 >gi|144900864|emb|CAM77728.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Magnetospirillum gryphiswaldense MSR-1] Length = 314 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 102/269 (37%), Positives = 153/269 (56%), Gaps = 16/269 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQ------PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 NHR+ + + + + L+LYG H V AAL N +RKI +++ T AL Sbjct: 35 NHRESRHKSAPRRDPAKGGERPAKLPSNQLWLYGAHAVLAALANKARKIRRIVLTVEALR 94 Query: 80 RLDWDANLPHPFPV----KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AV 129 +T Q +D+++ AVHQG+A+ L SP ++ Sbjct: 95 SHAASIQRARALRPLPGEETTERQELDRLLPPGAVHQGIAVLAEHLESPGIEDIGRLAQN 154 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R+ ++MVLD V DPHN+GAILRSA AF ++ T R+SP E+ LAKSASGALE +P Sbjct: 155 RDHAVVMVLDQVTDPHNVGAILRSAAAFGALAVVVTDRHSPEETGTLAKSASGALEVMPL 214 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +R++N+ AL+++ GF T GL+ ++ + L Q + KIAL++GAEG+GLR T+E Sbjct: 215 VRVTNMVRALEQLKEAGFWTAGLAGEATQTLAQAKLSGKIALVMGAEGEGLRRLTREHCD 274 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L M ++++LNVSNAAA++LY Sbjct: 275 HLVKLPMSDLVESLNVSNAAAISLYELAR 303 >gi|17545948|ref|NP_519350.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000] gi|52783318|sp|Q8Y016|RLMB_RALSO RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|17428243|emb|CAD14931.1| probable 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251 2'-o-methyltransferase) protein [Ralstonia solanacearum GMI1000] Length = 249 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 76/239 (31%), Positives = 118/239 (49%), Gaps = 7/239 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 L G H V+A L + +R I ++ N R D A + + + I G Sbjct: 6 LLIGFHAVTARLRHDARSIDEIYFEANRRDRRMQDFLKAAEAAGVRMIPADNERLRGIAG 65 Query: 107 KEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A A L LD + LL+VLD V DPHN+GA LR A A + Sbjct: 66 TDRHQGVVAKAEALSLALNLDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + +AK ASGA E +PYI ++NL L+++ G IG + ++++ L + Sbjct: 126 IAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQDLYR 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 IAL++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ + Sbjct: 186 ADFKGPIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRS 244 >gi|238019168|ref|ZP_04599594.1| hypothetical protein VEIDISOL_01031 [Veillonella dispar ATCC 17748] gi|237863867|gb|EEP65157.1| hypothetical protein VEIDISOL_01031 [Veillonella dispar ATCC 17748] Length = 243 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 57/238 (23%), Positives = 110/238 (46%), Gaps = 8/238 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPFPVKTVPPQTIDKIVGK 107 ++ G + V AL + +++ L V+ P + ++K Sbjct: 4 YIVGRNAVKEALKSGRSIQRIMVSEDKVKTGLADIVGLAKSQGIEVRPTPIKQMNKY-DL 62 Query: 108 EAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E HQG+ + + L + + LL++ D V DPHN+GAI+R+A + Sbjct: 63 EVPHQGVIALVSAVQFKELGEVLQETNHDVPLLILTDGVEDPHNMGAIIRTAECVGATAV 122 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + KR++ +A +AK+++GA+E IP +++ N+ ++++ GF +G + + L + Sbjct: 123 LIPKRHNAPINATVAKTSAGAIEQIPLVQVGNVAQTIKQLQKQGFWVMGAHMEGDRTLYE 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +++G EGKG+ +E + + M G + +LN S AAAV +Y Sbjct: 183 ADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQR 240 >gi|166031081|ref|ZP_02233910.1| hypothetical protein DORFOR_00763 [Dorea formicigenerans ATCC 27755] gi|166028928|gb|EDR47685.1| hypothetical protein DORFOR_00763 [Dorea formicigenerans ATCC 27755] Length = 252 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 107/248 (43%), Gaps = 10/248 (4%) Query: 42 HTSQPENL-FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 H + N + G + V A + K+F L ++ R H V+ V Sbjct: 4 HKDKHGNENMIEGRNAVLEAFRSGKPVDKLFVLDGCQDGPVRTIVREAKKHDTLVQFVDK 63 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILR 152 + + ++ +A A + D L++LD + DPHN+GAI+R Sbjct: 64 ERLTQLSQTGRHQGVIAYTAAYEYAQVEDMLALAKERGEDPFLILLDDIEDPHNLGAIIR 123 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A G+I KR + +A +AK+++GA+ + P +++NLT ++++ G + Sbjct: 124 TANLAGAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVTNLTKTMKELKEKGLWFVCA 183 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + + I L++G EG+G+ +ET +A + M G I +LN S A V Sbjct: 184 -DMGGESMYKLNLTGPIGLVIGNEGEGVSRLVKETCDFVASIPMKGDIDSLNASVATGVL 242 Query: 273 LYITQNHF 280 Y Sbjct: 243 AYEIVRQR 250 >gi|327472394|gb|EGF17825.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus sanguinis SK408] Length = 242 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEALLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNT-TGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|47094582|ref|ZP_00232234.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes str. 4b H7858] gi|254853492|ref|ZP_05242840.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|300764634|ref|ZP_07074626.1| hypothetical protein LMHG_11120 [Listeria monocytogenes FSL N1-017] gi|47017042|gb|EAL07923.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes str. 4b H7858] gi|258606864|gb|EEW19472.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|300514741|gb|EFK41796.1| hypothetical protein LMHG_11120 [Listeria monocytogenes FSL N1-017] Length = 251 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 117/248 (47%), Gaps = 13/248 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQ 99 + E ++ G + V L + R I ++ + + + V+ VP Q Sbjct: 2 EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152 I+K+VG HQG+A + A LD ++LD + DPHN+G+I+R Sbjct: 61 KIEKVVG--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A + GII KR S + +AK+++GA+E++P +R++N+ ++++ G G Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +A+++G+EG G+ +E + HL M G + +LN S AA++ Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238 Query: 273 LYITQNHF 280 LY Sbjct: 239 LYEVYRKR 246 >gi|317121670|ref|YP_004101673.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM 12885] gi|315591650|gb|ADU50946.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM 12885] Length = 273 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 90/265 (33%), Gaps = 10/265 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS---RKIFQLLATKNALAR 80 + K+++ ++ RH Q + G V AL + I+ Sbjct: 5 SPQNPRIKRLRKLQER-RHRRQLGATLVEGRRFVEEALAAGRPVRQAIYTAAFAAAPAGA 63 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL------SPTLDAVRNSQL 134 A + V + ++ + E +A A L Sbjct: 64 ALLRALAAAGTELAEVTDRLLEAVAMTETPQGIVAEVAVDEPAPVGPAWWRQVAEGRLPL 123 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ D V DP N+G ++R+A G + ++++GA +P R + Sbjct: 124 ALLPDGVQDPGNLGTLVRAAAGLGAAGAVLVPGTVDPFHPRAVRASAGACLRLPMARADS 183 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 A + + G +++ P L++G EG G+ P+ Q AT + Sbjct: 184 AAGAAESARAAGLAVWVAEAEAATPCWAVDWRRPCLLVVGNEGAGVSPEVQRYATGRVAI 243 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 + G I +LNV+ A + LY Sbjct: 244 PLAGGIGSLNVAMAGCILLYEAARQ 268 >gi|320173666|gb|EFW48856.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella dysenteriae CDC 74-1112] Length = 243 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L++LD V DPHN+GA LRSA A Sbjct: 62 SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q ++AL++GAEG+G+R T+ + + M G + +LNVS A + L+ Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTRVHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|325685815|gb|EGD27887.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 254 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 97/256 (37%), Gaps = 5/256 (1%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 + N+ K + QK ++ + + G H V AL S K ++LAT+ AL+R Sbjct: 3 ERTSVNNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALKA-SVKYREILATEAALSR 60 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 L + + + + + LL D Sbjct: 61 LAQLGLAYDEGKLIKISQSVASHLSSTKNSQDIFMTVKINQSEHFFFSYGKWVLL---DD 117 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G I+R+A A DG+I + + + + +S G+ H+ I+ Sbjct: 118 LADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIKADLPDAIAS 177 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + L + K L ++ALI+G E G+ P+ A ++ + G Sbjct: 178 LKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIAALADEKLYIPIKGRA 237 Query: 261 KALNVSNAAAVALYIT 276 ++LN + AA + +Y Sbjct: 238 ESLNAAVAAGIMIYHF 253 >gi|313893275|ref|ZP_07826850.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral taxon 158 str. F0412] gi|313442171|gb|EFR60588.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral taxon 158 str. F0412] Length = 243 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 8/238 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPFPVKTVPPQTIDKIVGK 107 ++ G + V AL + +++ L V+ P + ++K Sbjct: 4 YIVGRNAVKEALRSGRSIQRIMVSEDKVKTGLADIVGLAKSQGIEVRPTPIKQMNKY-DL 62 Query: 108 EAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E HQG+ + + L + LL++ D V DPHN+GAI+R+A + Sbjct: 63 EVPHQGVIALVSAVQFKELGEVLQETNHEVPLLILTDGVEDPHNMGAIIRTAECVGATAV 122 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + KR++ +A +AK+++GA+E IP +++ N+ ++++ GF +G + + L + Sbjct: 123 LIPKRHNAPINATVAKTSAGAIEQIPLVQVGNVAQTIKQLQKQGFWVMGAHMEGDRTLYE 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +++G EGKG+ +E + + M G + +LN S AAAV +Y Sbjct: 183 ADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQR 240 >gi|237718363|ref|ZP_04548844.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4] gi|229452296|gb|EEO58087.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4] Length = 247 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V AL I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEALQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I HQG+ + + L + ++LD V D N GAI R+ Sbjct: 63 IT--RKNHQGVIAFISSVTYQKAEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I R S S +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 121 AAVDAVIIPVRGSVSVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE G+ + + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRN 245 >gi|251799664|ref|YP_003014395.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. JDR-2] gi|247547290|gb|ACT04309.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. JDR-2] Length = 251 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102 + + G H V AL + R I ++ + A L H V+ V + +D Sbjct: 6 NQEEMIAGKHPVMEALRSG-RDINKIWIAEGAQKSLTQPIVAEAKQHGVIVQFVDKRKLD 64 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 +V +A A + D + + L++LD + DPHN+G+ILR+A Sbjct: 65 TMVEGVQHQGVVAQAAAFAYAEIEDLLARARELNETPFLLILDEIEDPHNLGSILRTAEC 124 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I KR S +A + K+++GA EH+P R++NL + ++ G G + Sbjct: 125 TGVHGVIIPKRRSVGLTATVLKTSAGAAEHVPVARVTNLAQTIDRLKEEGVWVAGTDVSA 184 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + + + +A+++G EGKG+ +E + L M G + +LN S AA V +Y Sbjct: 185 PQDVYKTKFDLPLAIVIGNEGKGMGRLIKEKCDFLVKLPMHGRLNSLNASVAAGVLMYEV 244 Query: 277 QNHF 280 Sbjct: 245 VRQR 248 >gi|22124552|ref|NP_667975.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis KIM 10] gi|45440391|ref|NP_991930.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|51594785|ref|YP_068976.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|108809893|ref|YP_653809.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Antiqua] gi|108813450|ref|YP_649217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516] gi|145600840|ref|YP_001164916.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides F] gi|150260575|ref|ZP_01917303.1| putative methylase [Yersinia pestis CA88-4125] gi|153949503|ref|YP_001402598.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|162419936|ref|YP_001605270.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Angola] gi|165926787|ref|ZP_02222619.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. F1991016] gi|165936560|ref|ZP_02225128.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. IP275] gi|166011869|ref|ZP_02232767.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. E1979001] gi|166213970|ref|ZP_02240005.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. B42003004] gi|167400679|ref|ZP_02306188.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419264|ref|ZP_02311017.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423260|ref|ZP_02315013.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467834|ref|ZP_02332538.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis FV-1] gi|170026005|ref|YP_001722510.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pseudotuberculosis YPIII] gi|186893793|ref|YP_001870905.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|218927584|ref|YP_002345459.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CO92] gi|229836642|ref|ZP_04456808.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Pestoides A] gi|229840254|ref|ZP_04460413.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842332|ref|ZP_04462487.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229903929|ref|ZP_04519042.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Nepal516] gi|270489084|ref|ZP_06206158.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis KIM D27] gi|294502489|ref|YP_003566551.1| putative methylase [Yersinia pestis Z176003] gi|52783320|sp|Q8ZIV4|RLMB_YERPE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|21957351|gb|AAM84226.1|AE013666_6 hypothetical protein y0638 [Yersinia pestis KIM 10] gi|45435247|gb|AAS60807.1| putative methylase [Yersinia pestis biovar Microtus str. 91001] gi|51588067|emb|CAH19673.1| putative methylase [Yersinia pseudotuberculosis IP 32953] gi|108777098|gb|ABG19617.1| methylase [Yersinia pestis Nepal516] gi|108781806|gb|ABG15864.1| putative methylase [Yersinia pestis Antiqua] gi|115346195|emb|CAL19063.1| putative methylase [Yersinia pestis CO92] gi|145212536|gb|ABP41943.1| methylase [Yersinia pestis Pestoides F] gi|149289983|gb|EDM40060.1| putative methylase [Yersinia pestis CA88-4125] gi|152960998|gb|ABS48459.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pseudotuberculosis IP 31758] gi|162352751|gb|ABX86699.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis Angola] gi|165915676|gb|EDR34285.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. IP275] gi|165921410|gb|EDR38634.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. F1991016] gi|165989228|gb|EDR41529.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. E1979001] gi|166204765|gb|EDR49245.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. B42003004] gi|166963258|gb|EDR59279.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050047|gb|EDR61455.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057430|gb|EDR67176.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752539|gb|ACA70057.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pseudotuberculosis YPIII] gi|186696819|gb|ACC87448.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pseudotuberculosis PB1/+] gi|229679699|gb|EEO75802.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Nepal516] gi|229690642|gb|EEO82696.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229696620|gb|EEO86667.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706326|gb|EEO92334.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Pestoides A] gi|262360520|gb|ACY57241.1| putative methylase [Yersinia pestis D106004] gi|262364467|gb|ACY61024.1| putative methylase [Yersinia pestis D182038] gi|270337588|gb|EFA48365.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis KIM D27] gi|294352948|gb|ADE63289.1| putative methylase [Yersinia pestis Z176003] gi|320013752|gb|ADV97323.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 246 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 8/241 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R ++ Q +D Sbjct: 2 SEIIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVIQVASRQWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 V +A D + L+VLD V DPHN+GA LRSA A Sbjct: 62 VEGGVHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A+ K ASGA E++P I+++NL L+ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEVVRQ 241 Query: 280 F 280 Sbjct: 242 R 242 >gi|299821035|ref|ZP_07052923.1| RNA methyltransferase [Listeria grayi DSM 20601] gi|299816700|gb|EFI83936.1| RNA methyltransferase [Listeria grayi DSM 20601] Length = 249 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 11/245 (4%) Query: 45 QPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + E ++ G + V AL + +KI+ A++ + + ++ VP Q ID Sbjct: 2 ENEQEWIGGRNPVLEALRSERDIQKIYIAEASQKGVMKQVIALAKERKLQIQFVPKQKID 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155 K+V E HQG+A + + LD ++LD + DPHN+G+I+R+A Sbjct: 62 KVV--EGAHQGVAAQISAYQYAELDELFERASTRNEQPFFILLDELEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GII R S + +AK+++GA+EHIP +R++NL + + G G + Sbjct: 120 AVGAHGIIIPNRRSVGLTQTVAKASTGAIEHIPVVRVTNLNKTIDVLKDRGLWIFGTDAK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + +++G+EG G+ +E + HL M G + +LN S AA++ LY Sbjct: 180 GSSDYRTMDVDMPLGIVIGSEGAGMSRLVREKCDFLVHLPMKGKVTSLNASVAASILLYE 239 Query: 276 TQNHF 280 Sbjct: 240 VYRKR 244 >gi|226950562|ref|YP_002805653.1| RNA methyltransferase, TrmH family [Clostridium botulinum A2 str. Kyoto] gi|226840837|gb|ACO83503.1| RNA methyltransferase, TrmH family [Clostridium botulinum A2 str. Kyoto] Length = 259 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 108/262 (41%), Gaps = 9/262 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ K+++ +K ++ +Q ++ + G AL + S + ++ + +L +L+ Sbjct: 4 SKDNQLIKEVRKLREK-KYRTQNKSFIIEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61 Query: 84 ---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 N+ + V + I G QG+ LD +L+ D Sbjct: 62 LYKKYNINNDIETYVVNYFVLKSI-GNTENPQGIVSVINYFKKEKLDLQNGFYILV--DK 118 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A GIITTK + +S G++ +IP I NL Sbjct: 119 VQDPGNMGTIIRTAHAAGALGIITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENLEVVKS 178 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + + +K D + + +G EG G+ + + + MPG Sbjct: 179 LRKKGFKLLVSSLDTNSNFYDVNMK-DNMIIAVGNEGNGISEVLKTLSDIKVKIPMPGAA 237 Query: 261 KALNVSNAAAVALYITQNHFAK 282 ++LNV+ A ++ + K Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259 >gi|146305679|ref|YP_001186144.1| RNA methyltransferase [Pseudomonas mendocina ymp] gi|145573880|gb|ABP83412.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudomonas mendocina ymp] Length = 250 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 78/240 (32%), Positives = 117/240 (48%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ QL ++ A + H PV Q +D+ Sbjct: 7 VYGVHAVEALLRHHPKRVKQLWLAESRQAPRIQPMLELAAQHRVPVGHKERQELDEWA-- 64 Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P L+ LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGENMLDELLERSEGVPLLLVLDGVTDPHNLGACLRTADAAGAQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A + K A GA E IP + ++NL L+K+ G +G + ++++ L Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQKKGLWVVGTAGEAEQEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q L++GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQLDMTGPTVLVMGAEGKGMRRLTREHCDYLVKLPMGGSVSSLNVSVATGVCLFEAVRQR 244 >gi|218134245|ref|ZP_03463049.1| hypothetical protein BACPEC_02137 [Bacteroides pectinophilus ATCC 43243] gi|217991620|gb|EEC57626.1| hypothetical protein BACPEC_02137 [Bacteroides pectinophilus ATCC 43243] Length = 248 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 103/238 (43%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V+ AL + K+F L ++ R H + V + +D + Sbjct: 10 IEGRNAVTEALRSGRPVDKLFVLDGCQDGPVRTIIREAKKHDTIINFVSKERLDSMSETG 69 Query: 109 AVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A A + D + +LD + DPHN+GAI+R+A G+ Sbjct: 70 KHQGVIAYAAAYEYAEVQDILDAAGEKGEPPFIFILDGIEDPHNLGAIIRTANLAGAHGV 129 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I KR + +A +AK+++GA+ + P +++N+ ++++ G + + + + Sbjct: 130 IIPKRRAVGLTATVAKTSAGAINYTPVAKVTNIAQTIEELKKEGMWFVCA-AMDGEVMYN 188 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++GAEG+G+ +E A + M G I +LN S AA V Y Sbjct: 189 LDLKGPIGLVIGAEGEGVSRLVREKCDFTASIPMKGNIDSLNASVAAGVLAYEIVRQR 246 >gi|163816511|ref|ZP_02207875.1| hypothetical protein COPEUT_02700 [Coprococcus eutactus ATCC 27759] gi|158448211|gb|EDP25206.1| hypothetical protein COPEUT_02700 [Coprococcus eutactus ATCC 27759] Length = 264 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 103/248 (41%), Gaps = 11/248 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 + + E + G + V A + K++ L ++ + + + Sbjct: 16 NENAEEAFVIEGRNAVLEAFRSGKTIDKLYVLDGCRDGVVNSIVREAKKQDTVINYLSKD 75 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152 ++++ + HQG+ A ++ + +LD + DPHN+GAI+R Sbjct: 76 KLNQMS-QAGKHQGVIAHAAAYKYAEIEDMFALAESRGEDPFFFILDEIEDPHNLGAIIR 134 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A G+I KR + +A + K+++GA+ + P +++N++ ++++ G Sbjct: 135 TANLCGAHGVIIPKRRAVGITATVVKASAGAINYTPVAKVTNISKTIEELKERGMWFACA 194 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 D + + + L++G EG G+ +E + + M G I +LN S AA V Sbjct: 195 DMDGELMYKCN-LTGSLGLVIGNEGNGVSRLVKEKCDYVVSVPMKGDIDSLNASVAAGVL 253 Query: 273 LYITQNHF 280 Y Sbjct: 254 AYEVVRQR 261 >gi|289168211|ref|YP_003446480.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus mitis B6] gi|288907778|emb|CBJ22618.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus mitis B6] Length = 242 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDHILEKTHQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|160882253|ref|ZP_02063256.1| hypothetical protein BACOVA_00199 [Bacteroides ovatus ATCC 8483] gi|260173823|ref|ZP_05760235.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2] gi|299146570|ref|ZP_07039638.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_23] gi|315922086|ref|ZP_07918326.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156112342|gb|EDO14087.1| hypothetical protein BACOVA_00199 [Bacteroides ovatus ATCC 8483] gi|298517061|gb|EFI40942.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_23] gi|313695961|gb|EFS32796.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 247 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V AL I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEALQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I HQG+ + + L + ++LD V D N GAI R+ Sbjct: 63 IT--RKNHQGVIAFISSVTYQKAEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I R S S +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 121 AAVDAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE G+ + + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRN 245 >gi|152976947|ref|YP_001376464.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025699|gb|ABS23469.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cytotoxicus NVH 391-98] Length = 254 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 103/277 (37%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ ++ K + + F+ G H V A Sbjct: 1 MKNIDSVKNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW + + VP + + E A+ Sbjct: 42 LKAD--IVTELIVSDQTDLPKDWIVS---DVEMYIVPEPIVKVLRETETTQGVFAVCEKQ 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + + ++ + +S Sbjct: 97 EKEVELSNGK----FLLLDGLQDPGNLGTIIRTADAAGVHAVVLGEGCVDAYNSKVLRST 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + K+ + G + ++ P + ALI+G EG G+ Sbjct: 153 QGSIFHLPVVKGNLE-EWIDKLKTHNVPVYGTALENGVPYGEITPTGSFALIVGNEGNGV 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ + G ++LNV+ AA + Y Q Sbjct: 212 HQDILAKCDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248 >gi|258513621|ref|YP_003189843.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum acetoxidans DSM 771] gi|257777326|gb|ACV61220.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum acetoxidans DSM 771] Length = 246 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 122/245 (49%), Gaps = 10/245 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101 + + + G + V AL + R I ++L K L+ + + PV+ V + Sbjct: 2 KNLSDVIVGRNPVKEALKS-QRPINKVLVAKGKLSGSLAEICSLARQNGIPVQEVDRTAL 60 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVA 156 +KI EAVHQG+A A L+ + +++LD + DPHN+GAI+R+A A Sbjct: 61 EKISA-EAVHQGVAAYAAAKEYVELEDILARAGEQEPFIIMLDEITDPHNLGAIIRTADA 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G++ T+R S + V+AKS++GA+E++P R++NL +++ + G G + Sbjct: 120 AGVHGVVVTRRRSALLTPVVAKSSAGAVEYVPVARVTNLVQSIKILQENGIWVAGADMEG 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K + + IA+++G EGKGL +E + L M G I +LN S A A+ Y Sbjct: 180 DKVYWEAPLSGPIAIVIGGEGKGLGRLVKEKCDFLVRLPMQGKISSLNASVATALLAYEV 239 Query: 277 QNHFA 281 + Sbjct: 240 VRQRS 244 >gi|306825520|ref|ZP_07458860.1| RNA methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432458|gb|EFM35434.1| RNA methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 242 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELAAEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSKLDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|326402255|ref|YP_004282336.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Acidiphilium multivorum AIU301] gi|325049116|dbj|BAJ79454.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Acidiphilium multivorum AIU301] Length = 276 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 104/275 (37%), Positives = 153/275 (55%), Gaps = 2/275 (0%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65 K+ + + R H + + R S L+LYG+H+V AAL NP+ Sbjct: 2 DKRDSHGKAGNGGRHKLPRGPHPHRRSQGDAPRDRRPASSAGGLWLYGLHSVEAALANPA 61 Query: 66 RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 R++ +L+ T+ A L P P + + +D+++G+ VHQG+AL+ PL+ P+ Sbjct: 62 RRLRRLVVTEEGEAALAGRLPHPWPIQPERIERDRLDQMLGRGIVHQGVALQADPLVPPS 121 Query: 126 L-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L DA++ ++VLD + DP N+GAILRSA AF +I +R +P E LAK+ASGAL Sbjct: 122 LNDALKRPGPVLVLDQITDPRNVGAILRSAQAFGAAMVIAQERNAPEEGGALAKAASGAL 181 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPK 243 E IP +R N+ AL + + G +GL + I N + AL+LGAEG+GLR Sbjct: 182 ERIPLLRTVNIARALIALKAAGLWVMGLDAAGLSHLSRDAIGNRRAALVLGAEGEGLRRL 241 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 T+ET + L MPG +++LNVS AAAVALY Sbjct: 242 TRETCDELVSLPMPGGMESLNVSAAAAVALYEIIR 276 >gi|322517494|ref|ZP_08070367.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] gi|322123976|gb|EFX95535.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] Length = 245 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 56/274 (20%), Positives = 108/274 (39%), Gaps = 31/274 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K++ I + + + +H L G H A Sbjct: 1 MEIIQSKQNASIKTARKL-------------------LQRKHRKTS--YLLEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 I Q+ + R+ + VK V P+ + ++ + QG+ E A Sbjct: 40 -KASGADILQIFVLEEMADRV------ANMSKVKLVSPEVLKELCETQ-TPQGIVAEVAK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 +++ LL+ + V DP N+G ++R+A A DG+ + + + + +S Sbjct: 92 QSQALPESLSGKYLLL--EDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R L S+ + + AL++G EG+G+ Sbjct: 150 QGSHFHLPIYRGPILEMVETCKKHDLTVLATTLSEVSVDYKAVKTDGNFALVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E+A + H++MPG ++LNV+ AA + ++ Sbjct: 210 SKEMAESADQLVHINMPGQAESLNVAVAAGIIMF 243 >gi|315649722|ref|ZP_07902806.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus vortex V453] gi|315274910|gb|EFU38286.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus vortex V453] Length = 250 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 119/246 (48%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102 E + G H+V+ AL + R I ++ +NA L ++ V + +D Sbjct: 3 QEEEVVAGKHSVTEALKSG-RTINKIWIAENAQKHLTLPIIAEAKKLGIVIQHVDKRKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V HQG+ + AP ++ L++LD + DPHN+G+ILR+A Sbjct: 62 QMV-PGVQHQGVVAQAAPYAYVEVEDLLKVAEEKGEPPFLLLLDEIEDPHNLGSILRTAD 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 G++ KR S +A ++K+++GA+E++P R++NL + ++ G +G D Sbjct: 121 CTGAHGVVLPKRRSAQVTATVSKTSAGAVEYVPVARVTNLGQTIDQLKEMGVWVVGTVVD 180 Query: 216 SKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + E+ + +A+++G E KG+ +E + L M G I +LN S AA V +Y Sbjct: 181 AVQELYDTEVFDGPVAIVIGNESKGMGRLIREKCDVLVKLPMAGKINSLNASVAAGVVMY 240 Query: 275 ITQNHF 280 Sbjct: 241 EVLRRR 246 >gi|291563819|emb|CBL42635.1| rRNA methylases [butyrate-producing bacterium SS3/4] Length = 260 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 100/255 (39%), Gaps = 4/255 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K + +K+R ++ + G V A P ++ + ++ + A Sbjct: 7 NDQVKAVIELKKKARARNEQGLFVVEG---VRMAAELPKDQVKSIYVSETFAKNPENAAI 63 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNSQLLMVLDHVNDPH 145 L + V + + LAL L LMVL+++ DP Sbjct: 64 LAEYPGYELVSDSVFAVMSDTQTPQGVLALVRQFSYGMDELLKSDRPAHLMVLENLQDPG 123 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ILR+ G+I ++ + + +S G++ +P+ +L + + + Sbjct: 124 NLGTILRAGEGAGITGLIMSRDTVDIYNPKVIRSTMGSVFRVPFFYTDDLEQTVLDLKAR 183 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + K EQE A ++G EG GL K + A + + M G +++LN Sbjct: 184 GIRVFAAHLAGKNNYEQEDYTGNTAFLIGNEGNGLTEKLSDMADTWVKIPMEGKVESLNA 243 Query: 266 SNAAAVALYITQNHF 280 + AA++ ++ T Sbjct: 244 AIAASILMFETARQR 258 >gi|282898547|ref|ZP_06306535.1| tRNA/rRNA methyltransferase (SpoU) [Cylindrospermopsis raciborskii CS-505] gi|281196415|gb|EFA71324.1| tRNA/rRNA methyltransferase (SpoU) [Cylindrospermopsis raciborskii CS-505] Length = 263 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 102/256 (39%), Gaps = 8/256 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA--LNNPSRKIFQLLATKNALARLDW 83 + K+++ + ++ + + L G H ++ A +N P + + +N+ + L Sbjct: 6 QNPLVKQIRKLH-SAKERHKQQLFVLEGTHLITEACSVNYPLETVCCTMDWQNSHSELWQ 64 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + V + + + A A + + + L + L+ + D Sbjct: 65 NVCNA-CHRTEIVSQEVLAAM----ATTVQPDGVVAMVKRCEDHPIPMTGLALALETIQD 119 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+R+A A G+ + + + ++++G + NL D +Q Sbjct: 120 PGNLGTIIRTAAAVDASGLWLSNDSVDLDHPKVLRASAGQWFRLKKQVSHNLKDTVQDCQ 179 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G Q + ++ Q + ++LG EG GL + A + + +++L Sbjct: 180 RGGMQVVATLPTAELTYWQVDWSLPSLILLGNEGAGLSDELATMANIQVKIPLSPQVESL 239 Query: 264 NVSNAAAVALYITQNH 279 NV+ +A++ LY Q Sbjct: 240 NVAISASLILYEAQRQ 255 >gi|160893354|ref|ZP_02074141.1| hypothetical protein CLOL250_00904 [Clostridium sp. L2-50] gi|156865046|gb|EDO58477.1| hypothetical protein CLOL250_00904 [Clostridium sp. L2-50] Length = 251 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 99/248 (39%), Gaps = 11/248 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 ++ E + G + V A + K++ + + V + Sbjct: 2 EENRNEKFEIEGRNAVMEAFRSGKTVDKLYLQDGCHDGSINSIVREAKKQETIINYVSKE 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152 ++++ HQG+ A +D + + +LD + DPHN+GAI+R Sbjct: 62 KLNQMSS-TGKHQGVIAHVAAYEYSAIDEIFAKAEEKGQPPFIFILDEIEDPHNLGAIVR 120 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A G+I KR + +A + K+++GA+ + P ++++NL + ++ G Sbjct: 121 TANLCGAHGVIIPKRRAVGITATVVKASAGAIAYTPVVKVTNLAKTIDELKKRGMWFACA 180 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 D + + L++G EG G+ +E + + M G I +LN S AA V Sbjct: 181 DMDGELMYRCN-LTGPMGLVIGNEGTGVSRLVKEKCDYVVSIPMSGDIDSLNASVAAGVL 239 Query: 273 LYITQNHF 280 Y Sbjct: 240 GYEVVRQR 247 >gi|237821018|ref|ZP_04596863.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CCRI 1974M2] Length = 251 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 123 GVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|182684414|ref|YP_001836161.1| spoU rRNA methylase family protein [Streptococcus pneumoniae CGSP14] gi|182629748|gb|ACB90696.1| spoU rRNA methylase family protein [Streptococcus pneumoniae CGSP14] Length = 253 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 15 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 73 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 74 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 133 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 134 GVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 193 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 194 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252 >gi|167745546|ref|ZP_02417673.1| hypothetical protein ANACAC_00237 [Anaerostipes caccae DSM 14662] gi|167655267|gb|EDR99396.1| hypothetical protein ANACAC_00237 [Anaerostipes caccae DSM 14662] Length = 257 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 98/254 (38%), Gaps = 7/254 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ +++ + SR + G+ P + ++ + + L + Sbjct: 6 QNKQIRQVIKLKKSSRERKRTGLFVAEGLRIFREI---PEEQRAKVFVSSDFLKLHGEEL 62 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 P + V P+ +I E L+L + + R+ +++L+++ DP Sbjct: 63 ---KGIPFEEVSPKVFREISDTETPQGILSLVKMKQSTLSEILKRSGSSILLLENLQDPG 119 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ++R+ GII ++ + + +S G++ +P+ +L + ++ + Sbjct: 120 NLGTLIRTGEGAGVSGIIMSRDTVDIYNPKVIRSTMGSIFRVPFTYTEDLAETVEYLRQQ 179 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + E + A ++G EG GL + A + M G +++LN Sbjct: 180 SVHVYAAHLNGTDYT-DESYDKISAFLIGNEGNGLTDRIAALADKRIRIPMEGRVESLNA 238 Query: 266 SNAAAVALYITQNH 279 + A + +Y + Sbjct: 239 AMAGGLLMYEARRQ 252 >gi|149002852|ref|ZP_01827778.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP14-BS69] gi|168493358|ref|ZP_02717501.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC3059-06] gi|194397072|ref|YP_002038090.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae G54] gi|225859218|ref|YP_002740728.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae 70585] gi|237651107|ref|ZP_04525359.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CCRI 1974] gi|303254383|ref|ZP_07340490.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae BS455] gi|303259053|ref|ZP_07345032.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP-BS293] gi|303261733|ref|ZP_07347680.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP14-BS292] gi|303264406|ref|ZP_07350326.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS397] gi|303267526|ref|ZP_07353374.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS457] gi|303269332|ref|ZP_07355105.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS458] gi|147759146|gb|EDK66140.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP14-BS69] gi|183576562|gb|EDT97090.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC3059-06] gi|194356739|gb|ACF55187.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae G54] gi|225722127|gb|ACO17981.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae 70585] gi|301802185|emb|CBW34931.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae INV200] gi|302598630|gb|EFL65669.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae BS455] gi|302637313|gb|EFL67801.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP14-BS292] gi|302639996|gb|EFL70452.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP-BS293] gi|302641162|gb|EFL71536.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS458] gi|302642927|gb|EFL73226.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS457] gi|302646218|gb|EFL76445.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS397] Length = 242 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 123 GVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|315640649|ref|ZP_07895754.1| TrmH family RNA methyltransferase [Enterococcus italicus DSM 15952] gi|315483588|gb|EFU74079.1| TrmH family RNA methyltransferase [Enterococcus italicus DSM 15952] Length = 251 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 51/276 (18%), Positives = 102/276 (36%), Gaps = 26/276 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M + K+ + LK H + + + L G H V A Sbjct: 1 ME-MQSTKNTYVKELKKLH-------------------RKKGRQDQQRYLLEGFHLVEEA 40 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +N+ + + L++ + A W V V + + I + +A+ P Sbjct: 41 VNSQAEVVDILISPRGAKEWAAWIEEQA--LDVTYVSEEVMAAISEQPTPQGIMAVVALP 98 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + +R ++LD+V DP N+G ++R+A A G+ + + + +S Sbjct: 99 R----VKEMRVKGKWLLLDNVQDPGNVGTMIRTADAAGFTGVFLGEGTADIYNLKTLRSM 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HI + ++ + K D++ALI+G EG+G+ Sbjct: 155 QGSHFHIEIQNGTIQDICQVFKEVGIPVYGSELNEQAVAYDTVEKTDQVALIMGNEGQGV 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + ++ + G ++LNV AA + +Y Sbjct: 215 AKEILAQTDANLYIPIYGKAESLNVGIAAGILMYHF 250 >gi|312127730|ref|YP_003992604.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor hydrothermalis 108] gi|311777749|gb|ADQ07235.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor hydrothermalis 108] Length = 270 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 51/284 (17%), Positives = 117/284 (41%), Gaps = 26/284 (9%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 IS +++E I LK H ++ + + G+ V A+ Sbjct: 7 EFISSRENECIKRLKKLHDK-------------------KYREEFRSFITEGLKLVREAI 47 Query: 62 NNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLA 115 + I ++ +++A R L ++ V P + + + + QG+ Sbjct: 48 DYQIECINLVIFSQHAKDRYQEFYWECKRLLEDGKIERVIEVPDKLFEYITTTSTPQGIL 107 Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 E + ++ ++N + ++V + + DP N+G ++R A AF D ++TTK + Sbjct: 108 AECNFVDKG-INFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPK 166 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 ++ G+L H+ +R + ++ + F + + + + + + +++G Sbjct: 167 TIRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFCVVIGN 226 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E +G+ + AT + M G ++LN + AA++ LY + Sbjct: 227 ESEGVSDSFAKVATRKIKIPMAGKAESLNAAVAASIVLYELRKR 270 >gi|167768153|ref|ZP_02440206.1| hypothetical protein CLOSS21_02709 [Clostridium sp. SS2/1] gi|167709677|gb|EDS20256.1| hypothetical protein CLOSS21_02709 [Clostridium sp. SS2/1] gi|291560179|emb|CBL38979.1| rRNA methylases [butyrate-producing bacterium SSC/2] Length = 257 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 104/255 (40%), Gaps = 7/255 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K++ + +R + E + G+ + P ++++ A+++ + Sbjct: 6 QNKQIKQIIKLKKSARERRKQELFLVEGIRMFTEI---PEEYLYKVYASEDF---YNEHR 59 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + V+ V PQ + +I LAL S + L +VL+++ DP Sbjct: 60 VIFEHMDVELVSPQVMKEISDTMTPQGVLALVKMMKYSLEDLLEQEKPLFLVLENLQDPG 119 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ILR+ +G+I + + + +S G++ +P++ + +L + + M Sbjct: 120 NLGTILRTGEGAGINGVIMSHDTVDIYNPKVTRSTMGSIFRVPFVYVDDLLEVAETMKQK 179 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 T + +E A +G EG GL K + + M G +++LN Sbjct: 180 NIITYAAHLNGTDYT-KEDYQKGTAFFIGNEGNGLTDKLTDKVQKKIKIPMCGKVESLNA 238 Query: 266 SNAAAVALYITQNHF 280 + A+ + +Y + Sbjct: 239 AMASGLLVYEARRQR 253 >gi|293365120|ref|ZP_06611837.1| RNA methyltransferase [Streptococcus oralis ATCC 35037] gi|307702175|ref|ZP_07639135.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC 35037] gi|291316570|gb|EFE57006.1| RNA methyltransferase [Streptococcus oralis ATCC 35037] gi|307624188|gb|EFO03165.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC 35037] Length = 242 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ + GF T G + Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKAEGFWTFGTDMNGTPCH 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|257465576|ref|ZP_05629947.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor 202] gi|257451236|gb|EEV25279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor 202] Length = 246 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 106/238 (44%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A L+N ++ ++ K RL N ++ V QT+D Sbjct: 5 IYGIHAVKAFLDNAPERLIEVFVLKGREDKRLIPLLNELQRLGIAIQQVNRQTLDNKSQG 64 Query: 108 EAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E +A D ++ LL++LD V DPHN+GA LR+A A D + Sbjct: 65 EVHQGIIAKVVPQKELNEHDLDRILASKSQPLLLILDGVTDPHNLGACLRTADATGVDAV 124 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLE 221 I K S ++ K A GA E +P IR++N + +G + ++ + Sbjct: 125 IVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNVWIVGTAGEATSSIY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + IAL++GAEG G+R T+E + + M G + +LNVS A + L+ Sbjct: 185 EAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGICLFEIVRQ 242 >gi|261409539|ref|YP_003245780.1| TrmH family RNA methyltransferase [Paenibacillus sp. Y412MC10] gi|261286002|gb|ACX67973.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. Y412MC10] Length = 256 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 119/246 (48%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102 E + G H+V+ AL + R I ++ +NA L ++ V + +D Sbjct: 9 QEEEVVAGKHSVTEALKSG-RTINKIWIAENAQKHLTLPIIAEAKKLGIVIQHVDKRKLD 67 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V HQG+ + AP +D L++LD + DPHN+G+ILR+A Sbjct: 68 QMV-PGVQHQGVVAQAAPYAYVEVDDLLKAAEEKGEPPFLLLLDEIEDPHNLGSILRTAD 126 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 G+I KR S +A ++K+++GA+E++P R++NL + ++ G +G D Sbjct: 127 CTGAHGVILPKRRSAQITATVSKTSAGAVEYVPVARVTNLGQTIDQLKEMGVWVVGTVVD 186 Query: 216 SKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + E+ + +A+++G E KG+ +E + L M G I +LN S AA V +Y Sbjct: 187 AVQELYDTEVFDGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGKINSLNASVAAGVVMY 246 Query: 275 ITQNHF 280 Sbjct: 247 EVLRRR 252 >gi|16799350|ref|NP_469618.1| hypothetical protein lin0273 [Listeria innocua Clip11262] gi|16802287|ref|NP_463772.1| hypothetical protein lmo0241 [Listeria monocytogenes EGD-e] gi|47097641|ref|ZP_00235161.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes str. 1/2a F6854] gi|226222870|ref|YP_002756977.1| Conserved hypothetical proteins like to B. subtilis YacO protein [Listeria monocytogenes Clip81459] gi|254825715|ref|ZP_05230716.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|254828701|ref|ZP_05233388.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|254831934|ref|ZP_05236589.1| hypothetical protein Lmon1_11295 [Listeria monocytogenes 10403S] gi|254900578|ref|ZP_05260502.1| hypothetical protein LmonJ_12209 [Listeria monocytogenes J0161] gi|254913471|ref|ZP_05263483.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254932460|ref|ZP_05265819.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|254937948|ref|ZP_05269645.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|254991759|ref|ZP_05273949.1| hypothetical protein LmonocytoFSL_00582 [Listeria monocytogenes FSL J2-064] gi|255022535|ref|ZP_05294521.1| hypothetical protein LmonocyFSL_01634 [Listeria monocytogenes FSL J1-208] gi|255027363|ref|ZP_05299349.1| hypothetical protein LmonocytFSL_15268 [Listeria monocytogenes FSL J2-003] gi|255520315|ref|ZP_05387552.1| hypothetical protein LmonocFSL_03647 [Listeria monocytogenes FSL J1-175] gi|284800536|ref|YP_003412401.1| hypothetical protein LM5578_0283 [Listeria monocytogenes 08-5578] gi|284993722|ref|YP_003415490.1| hypothetical protein LM5923_0282 [Listeria monocytogenes 08-5923] gi|290892618|ref|ZP_06555611.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|16409606|emb|CAD00768.1| lmo0241 [Listeria monocytogenes EGD-e] gi|16412702|emb|CAC95506.1| lin0273 [Listeria innocua Clip11262] gi|47013985|gb|EAL04998.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes str. 1/2a F6854] gi|225875332|emb|CAS04029.1| Conserved hypothetical proteins like to B. subtilis YacO protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258601106|gb|EEW14431.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|258610557|gb|EEW23165.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|284056098|gb|ADB67039.1| hypothetical protein LM5578_0283 [Listeria monocytogenes 08-5578] gi|284059189|gb|ADB70128.1| hypothetical protein LM5923_0282 [Listeria monocytogenes 08-5923] gi|290557927|gb|EFD91448.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|293584016|gb|EFF96048.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|293591479|gb|EFF99813.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|293594959|gb|EFG02720.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|328476082|gb|EGF46791.1| RNA methyltransferase, TrmH family [Listeria monocytogenes 220] gi|332310652|gb|EGJ23747.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. Scott A] Length = 251 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 13/248 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQ 99 + E ++ G + V L + R I ++ + + + V+ VP Q Sbjct: 2 EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152 I+K+V HQG+A + A LD ++LD + DPHN+G+I+R Sbjct: 61 KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A + GII KR S + +AK+++GA+E++P +R++N+ ++++ G G Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +A+++G+EG G+ +E + HL M G + +LN S AA++ Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238 Query: 273 LYITQNHF 280 LY Sbjct: 239 LYEVYRKR 246 >gi|37528393|ref|NP_931738.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] gi|52783299|sp|Q7MYU6|RLMB_PHOLL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|36787831|emb|CAE16946.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 244 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 113/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPF--PVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K RL + ++ Q +D Sbjct: 2 SEIIYGIHAVKALLERDPQRFIEVYVLKGREDRRLTPLIHALESIGMTIQLANRQWLDNQ 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ + P L A + L+VLD V DPHN+GA LRSA A Sbjct: 62 T-EGAVHQGIIAKVKPGRQYQENDLPDLLAQVETPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S +A K A GA E +P IR++NL L+ + + +G + ++ Sbjct: 121 VHAVIIPRDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRLLQEYNIWVVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 TLYQSKLTGPMALVMGAEGEGMRRLTREHCDELISIPMVGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HFA 281 + Sbjct: 241 QRS 243 >gi|319651786|ref|ZP_08005912.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2] gi|317396605|gb|EFV77317.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2] Length = 250 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 57/278 (20%), Positives = 107/278 (38%), Gaps = 29/278 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 + I K+ KI K + + E + G H V A Sbjct: 2 LKHIQSAKNPKIKEWKKLLTK-------------------KERDKTETFLVEGFHLVEEA 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L I +++ ++N WD PV V + I ++ E A Sbjct: 43 LKANQ--IAEIIISENKDMPPGWDY---GDIPVTMVTEEIIGQLADTETPQGIFA--VCS 95 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + LL+ D V DP N+G ++R+A A D +I + + + + +SA Sbjct: 96 QEPSSEEVKGKRFLLI--DAVQDPGNLGTMIRTADAAGIDAVIVGEGSVDAYNPKVLRSA 153 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P +R + + S ++++ + E +D AL++G EG G+ Sbjct: 154 QGSHFHLPVLRGNLSDWIGRLKESKVPVYGTALENAREYTKYES-SDSFALLVGNEGNGV 212 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + ++ + G ++LNV+ AA + LY + Sbjct: 213 NKELLANTAANLYIPIFGKSESLNVAVAAGILLYHLRK 250 >gi|238923439|ref|YP_002936955.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium rectale ATCC 33656] gi|238875114|gb|ACR74821.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium rectale ATCC 33656] Length = 263 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 93/256 (36%), Gaps = 4/256 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ K +Q+ K++ + + G A P + + +++ + Sbjct: 6 SNKSIKNVQALLSKAKERKKQGVFVVEGPKMSFEA---PYDWVSAVYMSESFFNDDRFKE 62 Query: 86 NLPHPF-PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + V + + LA+ P + L+VL+ + DP Sbjct: 63 EKKRFLDKTEIVSDSVFKSMSDTQTPQGVLAIVKMPHYEIDELFKGDKTELLVLESIQDP 122 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G ++R+ GII + + +S G+L +P+ +L + ++ S Sbjct: 123 GNLGTMVRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPFYITDDLPETIEYAKS 182 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G K ++ ++G EG GL + + A + + M G +++LN Sbjct: 183 KGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVESLN 242 Query: 265 VSNAAAVALYITQNHF 280 + +A + +Y Sbjct: 243 AAISATLLMYECNRQR 258 >gi|152999247|ref|YP_001364928.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica OS185] gi|160873860|ref|YP_001553176.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica OS195] gi|304411189|ref|ZP_07392804.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS183] gi|307306484|ref|ZP_07586227.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica BA175] gi|151363865|gb|ABS06865.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS185] gi|160859382|gb|ABX47916.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS195] gi|304350382|gb|EFM14785.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS183] gi|306910775|gb|EFN41203.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica BA175] gi|315266087|gb|ADT92940.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS678] Length = 246 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102 + ++G+H V A L + +I +L + + + ++ + +D Sbjct: 2 KKQDIIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLANQAKAFGTTIQVASRKALD 61 Query: 103 KIVGKEAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ L A L++LD V DPHN+GA LR+A A Sbjct: 62 DKA-ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S +A ++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVQGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q +A+ +GAE KGLR ++E+ S+ + M G + +LNVS A + L+ Sbjct: 181 DCELYQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|148259103|ref|YP_001233230.1| RNA methyltransferase [Acidiphilium cryptum JF-5] gi|146400784|gb|ABQ29311.1| RNA methyltransferase, TrmH family, group 3 [Acidiphilium cryptum JF-5] Length = 276 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 104/275 (37%), Positives = 153/275 (55%), Gaps = 2/275 (0%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65 K+ + + R H + + R S L+LYG+H+V AAL NP+ Sbjct: 2 DKRDSHGKAGNGGRHKLPRGPHPHRRPQGDAPRDRRPASSAGGLWLYGLHSVEAALANPA 61 Query: 66 RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 R++ +L+ T+ A L P P + + +D+++G+ VHQG+AL+ PL+ P+ Sbjct: 62 RRLRRLVVTEEGEAALAGRLPHPWPIQPERIERDRLDQMLGRGIVHQGVALQADPLVPPS 121 Query: 126 L-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L DA++ ++VLD + DP N+GAILRSA AF +I +R +P E LAK+ASGAL Sbjct: 122 LNDALKRPGPVLVLDQITDPRNVGAILRSAQAFGAAMVIAQERNAPEEGGALAKAASGAL 181 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPK 243 E IP +R N+ AL + + G +GL + I N + AL+LGAEG+GLR Sbjct: 182 ERIPLLRTVNIARALIALKAAGLWVMGLDAAGLSHLSRDAIGNRRAALVLGAEGEGLRRL 241 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 T+ET + L MPG +++LNVS AAAVALY Sbjct: 242 TRETCDELVSLPMPGGMESLNVSAAAAVALYEIIR 276 >gi|330960080|gb|EGH60340.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 250 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 8/239 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ + + R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P LD LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLEELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Q Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ + Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 245 >gi|330873777|gb|EGH07926.1| RNA methyltransferase [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965990|gb|EGH66250.1| RNA methyltransferase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 253 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 8/239 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ + + R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P LD LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Q Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ + Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 245 >gi|330501633|ref|YP_004378502.1| RNA methyltransferase [Pseudomonas mendocina NK-01] gi|328915919|gb|AEB56750.1| RNA methyltransferase [Pseudomonas mendocina NK-01] Length = 250 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 77/240 (32%), Positives = 116/240 (48%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ QL ++ A + + PV Q +D+ Sbjct: 7 VYGVHAVEALLRHHPKRVKQLWLAESRQAPRIQPMLELAAQNRVPVGHKERQELDEWA-- 64 Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P L+ LL+VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGENMLDELLERSEGVPLLLVLDGVTDPHNLGACLRTADAAGAQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A + K A GA E IP + ++NL L+K+ G +G + + ++ L Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQKKGLWVVGTAGEVEQEL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q L++GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQLDMTGPTVLVMGAEGKGMRRLTREHCDYLVKLPMGGSVSSLNVSVATGVCLFEAVRQR 244 >gi|291528003|emb|CBK93589.1| rRNA methylase, putative, group 3 [Eubacterium rectale M104/1] Length = 255 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 101/241 (41%), Gaps = 9/241 (3%) Query: 50 FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV-- 105 ++ G + V A + K+F L ++ + H + V + +D++ Sbjct: 13 YIEGRNAVLEAFRSGKTIDKLFVLDGCQDGPIKSITREARKHDAIINYVAKERLDQMSET 72 Query: 106 ----GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 G AV + + +++LD + DPHN+GAI+R+A G Sbjct: 73 GKHQGVIAVSAAYEYAEVSDILENAERKGEPPFIIILDGIEDPHNLGAIIRTANQAGAHG 132 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II KR + + +AK+++GA+ + P +++N+++ ++++ G + + Sbjct: 133 IIIPKRRAVGLTPTVAKTSAGAINYTPVAKVTNISNTIKELKEKGMWFVCA-DMGGTTMY 191 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 I L++G EG G+ +E A + M G I +LN S A V Y Sbjct: 192 DLNLTGPIGLVIGNEGDGVSKLVKENCDMTASIPMVGDIDSLNASVATGVFAYEIVRQRL 251 Query: 282 K 282 K Sbjct: 252 K 252 >gi|213967932|ref|ZP_03396078.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae pv. tomato T1] gi|301383751|ref|ZP_07232169.1| RNA methyltransferase [Pseudomonas syringae pv. tomato Max13] gi|302059274|ref|ZP_07250815.1| RNA methyltransferase [Pseudomonas syringae pv. tomato K40] gi|302132342|ref|ZP_07258332.1| RNA methyltransferase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927275|gb|EEB60824.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae pv. tomato T1] Length = 253 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 8/239 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ + + R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P LD LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Q Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ + Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 245 >gi|28872048|ref|NP_794667.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato str. DC3000] gi|52783312|sp|Q87VK2|RLMB_PSESM RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|28855301|gb|AAO58362.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae pv. tomato str. DC3000] gi|331014619|gb|EGH94675.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 250 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 8/239 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ + + R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P LD LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Q Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ + Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 245 >gi|238021416|ref|ZP_04601842.1| hypothetical protein GCWU000324_01316 [Kingella oralis ATCC 51147] gi|237868396|gb|EEP69402.1| hypothetical protein GCWU000324_01316 [Kingella oralis ATCC 51147] Length = 250 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 114/243 (46%), Gaps = 9/243 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102 +YG H V+A L + I +L +N A R + V ++ Sbjct: 2 SNQRLIYGFHAVNARLWQNPKSIVELYVLENKNDARTREVLEKAAAEKVRVHFADMNRLN 61 Query: 103 KIVGKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 I K A HQG+ L L+ +R L+VLD + DPHN+GA LR+A A Sbjct: 62 TIA-KGARHQGVVGFIDASKNHVHLEDVLENLREPAFLLVLDGITDPHNLGACLRTADAM 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K S +A ++K A GA E +PYI ++NL L+++ +G +G D + Sbjct: 121 GVHAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMDGE 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L + +A ++G EG G+R T+E ++ + M G ++++N+S +A + + T+ Sbjct: 181 ADLFHYDIPENVAWVMGNEGDGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVMAETR 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|332283859|ref|YP_004415770.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7] gi|330427812|gb|AEC19146.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7] Length = 249 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 113/242 (46%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L G H V A L + I +L ++ + + V+ VP + +D + Sbjct: 6 VLAGFHAVVARLRHAPDSIKELYVEASRRDKRMQTFIEQAQAANIRVRPVPAERLDGLAR 65 Query: 107 KEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +AL A ++ L+ LL++LD V DPHN+GA LR+A A Sbjct: 66 GTRHQGVVALAEAREIAADVDEVLDLLEDKSEPALLLILDSVTDPHNLGACLRTADAAGV 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + + ++ + + A GA E +PYI ++NL ++++ S +G + Sbjct: 126 HAVIAPRDKAVGLNSTVQRVACGAAETVPYIMVTNLARTMRQLKSRDVWLVGTDDQATGS 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +A ++GAEG+G+R T+ET + + M G +++LNVS A+AV LY + Sbjct: 186 LHQVDARRPMAWVMGAEGEGMRRLTRETCDELVTIPMLGSVESLNVSVASAVCLYESVRQ 245 Query: 280 FA 281 Sbjct: 246 RT 247 >gi|328944843|gb|EGG39003.1| RNA methyltransferase [Streptococcus sanguinis SK1087] Length = 242 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLGKLKEAGFWIFGTDMQGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+AL++G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTA-GKLALVIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|331266684|ref|YP_004326314.1| TrmH family RNA methyltransferase group 3 [Streptococcus oralis Uo5] gi|326683356|emb|CBZ00974.1| TrmH family RNA methyltransferase group 3 [Streptococcus oralis Uo5] Length = 260 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|307608839|emb|CBW98231.1| hypothetical protein LPW_00911 [Legionella pneumophila 130b] Length = 249 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 76/242 (31%), Positives = 123/242 (50%), Gaps = 9/242 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHP--FPVKTVPPQTIDKIVG 106 ++YG+H VSA L NP R I +L ++ + RL P++ + Q +++ Sbjct: 5 YVYGLHAVSALLANPHRMIKKLFVNQDRIDKRLHEFLIKAENAHVPIEKLSAQKMNQQFS 64 Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + +AL +A L+ + L+++LD + DPHN+GA LRSA A D Sbjct: 65 EFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACLRSADATGVD 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S S + V++K A GA E IP +R++NL A+ + G G + +++ L Sbjct: 125 FVVIPKDKSASITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAAGEAEHLL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + IAL++GAEG GLR T+E + L M G +++LNVS A V+LY Sbjct: 185 YAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQR 244 Query: 281 AK 282 + Sbjct: 245 GQ 246 >gi|327468344|gb|EGF13829.1| RNA methyltransferase [Streptococcus sanguinis SK330] Length = 242 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 119/242 (49%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + +++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQKDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|166030706|ref|ZP_02233535.1| hypothetical protein DORFOR_00380 [Dorea formicigenerans ATCC 27755] gi|166029498|gb|EDR48255.1| hypothetical protein DORFOR_00380 [Dorea formicigenerans ATCC 27755] Length = 264 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 100/259 (38%), Gaps = 5/259 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K++ + +K + + + G+ + +++ N + Sbjct: 6 SNAKVKRLVNLKKKKKLRDEEGVFLVEGIRMFREVPKDRLVEVYASEEFWNRERKAVEQV 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS----QLLMVLDHV 141 + + + + QG+ + V+ LL+VLD + Sbjct: 66 LAGTKVQPEILADFVFEYVSD-TKTPQGILCLVRQKQYSITEIVKEKGGELPLLLVLDQI 124 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+A GI+ ++ + + +S GA +P+ + +L + +++ Sbjct: 125 QDPGNLGTIVRTAEGAGVTGIVMSQDCVDMYNPKVVRSTMGAAYRVPFCYVDDLAEEVKQ 184 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 M G T + K ++E A ++G EG GLR + + A + M G ++ Sbjct: 185 MKEAGICTYAAHLEGKNSYDEEDYRKASAFLIGNEGNGLRDEVADQAQVYIRIPMKGQVE 244 Query: 262 ALNVSNAAAVALYITQNHF 280 +LN + A A+ + Sbjct: 245 SLNAAVATAILTFEAARQR 263 >gi|317499626|ref|ZP_07957888.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893101|gb|EFV15321.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA] Length = 261 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 104/255 (40%), Gaps = 7/255 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K++ + +R + E + G+ + P ++++ A+++ + Sbjct: 10 QNKQIKQIIKLKKSARERRKQELFLVEGIRMFTEI---PEEYLYKVYASEDF---YNEHR 63 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + V+ V PQ + +I LAL S + L +VL+++ DP Sbjct: 64 VIFEHMDVELVSPQVMKEISDTMTPQGVLALVKMMKYSLEDLLEQEKPLFLVLENLQDPG 123 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ILR+ +G+I + + + +S G++ +P++ + +L + + M Sbjct: 124 NLGTILRTGEGAGINGVIMSHDTVDIYNPKVTRSTMGSIFRVPFVYVDDLLEVAETMKQK 183 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 T + +E A +G EG GL K + + M G +++LN Sbjct: 184 NIITYAAHLNGTDYT-KEDYQKGTAFFIGNEGNGLTDKLTDKVQKKIKIPMCGKVESLNA 242 Query: 266 SNAAAVALYITQNHF 280 + A+ + +Y + Sbjct: 243 AMASGLLVYEARRQR 257 >gi|116871624|ref|YP_848405.1| RNA methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740502|emb|CAK19622.1| RNA methyltransferase, TrmH family, group 3 [Listeria welshimeri serovar 6b str. SLCC5334] Length = 251 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 62/248 (25%), Positives = 116/248 (46%), Gaps = 13/248 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQ 99 + E ++ G + V L + R I ++ + + + V+ VP Q Sbjct: 2 EQENEQEWIGGRNPVLEVLRS-ERDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152 I+K+V HQG+A + A LD ++LD + DPHN+G+I+R Sbjct: 61 KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A + GII KR + + +AK+++GA+E++P +R++N+ ++++ G G Sbjct: 119 TADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +A+++G+EG G+ +E + HL M G + +LN S AA++ Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238 Query: 273 LYITQNHF 280 LY Sbjct: 239 LYEVYRKR 246 >gi|116516815|ref|YP_816752.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae D39] gi|148992659|ref|ZP_01822327.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP9-BS68] gi|148997484|ref|ZP_01825089.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP11-BS70] gi|168483931|ref|ZP_02708883.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC1873-00] gi|168489618|ref|ZP_02713817.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae SP195] gi|168575914|ref|ZP_02721829.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae MLV-016] gi|169833851|ref|YP_001694873.1| RNA methyltransferase [Streptococcus pneumoniae Hungary19A-6] gi|116077391|gb|ABJ55111.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae D39] gi|147756539|gb|EDK63580.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP11-BS70] gi|147928676|gb|EDK79690.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP9-BS68] gi|168996353|gb|ACA36965.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae Hungary19A-6] gi|172042719|gb|EDT50765.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC1873-00] gi|183571884|gb|EDT92412.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae SP195] gi|183578281|gb|EDT98809.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae MLV-016] gi|332073764|gb|EGI84243.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA17570] gi|332200899|gb|EGJ14971.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA41317] gi|332201895|gb|EGJ15965.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA47368] Length = 242 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|15903354|ref|NP_358904.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus pneumoniae R6] gi|307068107|ref|YP_003877073.1| hypothetical protein SPAP_1485 [Streptococcus pneumoniae AP200] gi|15458955|gb|AAL00115.1| tRNA (guanosine-2'-O-)-methyltransferase, TrmH family [Streptococcus pneumoniae R6] gi|306409644|gb|ADM85071.1| hypothetical protein SPAP_1485 [Streptococcus pneumoniae AP200] Length = 253 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 15 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 73 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 74 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 133 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 134 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 193 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 194 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252 >gi|331007603|ref|ZP_08330749.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma proteobacterium IMCC1989] gi|330418581|gb|EGG93101.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma proteobacterium IMCC1989] Length = 251 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 70/251 (27%), Positives = 118/251 (47%), Gaps = 16/251 (6%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTI 101 ++ +YG+H V A ++ ++I L K + V+TV + + Sbjct: 2 NNDDDIVYGLHAVQALVDGSPQRIQTLWLLKGRNDQRLQSIRSVAEKSRITVRTVAREKL 61 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-----------RNSQLLMVLDHVNDPHNIGAI 150 D +V E HQG+ + + ++VLD V DPHN+GA Sbjct: 62 DGMV--EGNHQGVIASVVNVTEVYDEDYLKSRLPKMKESGVIPFILVLDGVTDPHNLGAC 119 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LRSA A +I K S S + + K A GA E +P +R++NL+ L+ + S G + Sbjct: 120 LRSAEAAGVQFVIVPKDNSASLTPTVVKVACGAAEVLPLVRVTNLSRTLEWLQSQGVWLV 179 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + ++++ Q +A+++GAEGKGLR T+E S+ + M G + +LNVS A+ Sbjct: 180 GAAGEAEQDHYQMNLTGPLAIVMGAEGKGLRRLTRERCDSLIRIPMMGEVSSLNVSVASG 239 Query: 271 VALYITQNHFA 281 + L+ + Sbjct: 240 ICLFEALRQRS 250 >gi|229087115|ref|ZP_04219265.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44] gi|228696183|gb|EEL49018.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44] Length = 265 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 91/277 (32%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSLQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + + VP + + E A+ Sbjct: 53 LKAGVAVELIVSDQTDLPKDWTV-----SDVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 108 EKEVDLTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + ++ + ALI+G EG G+ Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKEKNVPVYGTA-LENGVSYGEVTPTGSFALIVGNEGNGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILTKCDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|307704980|ref|ZP_07641867.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597] gi|307621431|gb|EFO00481.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597] Length = 242 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFSYSELDNILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EHIP R++NL+ L K+ GF T G + Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHIPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|160878575|ref|YP_001557543.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans ISDg] gi|160427241|gb|ABX40804.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans ISDg] Length = 264 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 100/258 (38%), Gaps = 1/258 (0%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-D 82 ++ K + ++S+ ++ + G + +I ++ ++ + Sbjct: 4 SSSNSQIKNLIKLQKQSKVRNELKVFVCEGKKMFEEVASQQRNQIKKVYLAESYYHQYTK 63 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + + + Q + + LA+ P+ + +S L++L+ + Sbjct: 64 QNPEYLKGLDFEVLSDQVMKEASETITPQGILAIVKQPIYTLKDMTSGDSIRLLLLEDIR 123 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ++R+A GI+ +K + + +S GA+ +P+ + L ++ Sbjct: 124 DPGNLGTMVRTAEGVGMTGIVLSKDSVDMFNPKVIRSTMGAIFRVPFFYAEDFYACLNQI 183 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + ++ K A+++G E GL K +T + M G +++ Sbjct: 184 KNEEIAIYAAHLQGAVWYDKVSYQGKSAILIGNEANGLSDKATSLSTQRIKIPMEGNVES 243 Query: 263 LNVSNAAAVALYITQNHF 280 LN + AAAV +Y + Sbjct: 244 LNAAIAAAVLMYESYRQI 261 >gi|54296089|ref|YP_122458.1| hypothetical protein lpp0107 [Legionella pneumophila str. Paris] gi|53749874|emb|CAH11255.1| hypothetical protein lpp0107 [Legionella pneumophila str. Paris] Length = 249 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 123/242 (50%), Gaps = 9/242 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 ++YG+H VSA L NP R I +L ++ + + + P++ + Q +++ Sbjct: 5 YVYGLHAVSALLANPHRMIKKLFVNQDRIDKRLHEFLVKAENAHVPIEKLSSQKMNQQFS 64 Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + +AL +A L+ + L+++LD + DPHN+GA LRSA A D Sbjct: 65 EFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACLRSADATGVD 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S + + V++K A GA E IP +R++NL A+ + G G + +++ L Sbjct: 125 FVVIPKDKSANITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAAGEAEHLL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + IAL++GAEG GLR T+E + L M G +++LNVS A V+LY Sbjct: 185 YAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQR 244 Query: 281 AK 282 + Sbjct: 245 GQ 246 >gi|324992441|gb|EGC24362.1| RNA methyltransferase [Streptococcus sanguinis SK405] Length = 242 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 THKWNTA-GKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|251780637|ref|ZP_04823557.1| RNA methyltransferase, TrmH family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084952|gb|EES50842.1| RNA methyltransferase, TrmH family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 262 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 6/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82 + + YK+ + + ++ ++ + G V A+ + +L + Sbjct: 6 SKENTIYKEAKKLKDR-KNRNKINKYVIEGFRLVDEAIRANLDIEYFILTEIGYEKLDNY 64 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 D + V + ++ E +A+ + + D V Sbjct: 65 IDKDKMKKHKVFCITDTLFKELASTENPQGIIAIVKMDNKNLNF----QGDFYLFCDKVQ 120 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+A A +GI+ +K + +S G+L ++P + ++ + Sbjct: 121 DPGNLGTIIRTAHAAGVNGIVLSKGTVDIYNEKTIRSTMGSLFYMPIYYDDDEFSLIKSL 180 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF I S +S K +E KI L +G EG G+ + + A + MPG ++ Sbjct: 181 KKDGFTLIVTSLESSKDFFKEDLKGKIILTVGNEGNGVSNEVLDLADRRVKIPMPGGAES 240 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ A ++ +Y Sbjct: 241 LNVAIATSIIIYEKVRQ 257 >gi|238019331|ref|ZP_04599757.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748] gi|237864030|gb|EEP65320.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748] Length = 264 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 62/284 (21%), Positives = 104/284 (36%), Gaps = 26/284 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K +++ K++ S Q+ ++ ++ + G+ ++ Sbjct: 1 MEFIQSK------------------DNKTIKRIVSLGQR-KNRNKHGEYIVEGIRSIRDI 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 +N I ++ ++ + +A L P DKI QG+ Sbjct: 42 SSNG--VIKTIVIRESKFKDNNIEALLALDSMQSIPTYIAQDPIFDKI-DNTVNGQGIIA 98 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 A + + LD V DP N+G I+R+AVA GI K + Sbjct: 99 IVAKPNHSIESISIEDGVYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKT 158 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 +S AL IP L+ + T + + KP + + LILG E Sbjct: 159 VRSTMSALHKIPVYEDVTLSMLNDLIAESNMSTYVTALEESKPYNMVTYDKRCMLILGNE 218 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G G+ P+ + M G I++LNVS AAA+ +Y Q Sbjct: 219 GNGVTPEVMNLCKHRIMIPMYGDIESLNVSVAAALCMYKAQEQL 262 >gi|54293055|ref|YP_125470.1| hypothetical protein lpl0092 [Legionella pneumophila str. Lens] gi|53752887|emb|CAH14322.1| hypothetical protein lpl0092 [Legionella pneumophila str. Lens] Length = 249 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 76/242 (31%), Positives = 123/242 (50%), Gaps = 9/242 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHP--FPVKTVPPQTIDKIVG 106 ++YG+H VSA L NP R I +L ++ + RL P++ + Q +++ Sbjct: 5 YVYGLHAVSALLANPHRMIKKLFVNQDRIDKRLHEFLIKAENAHVPIEKLSAQKMNQQFS 64 Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + +AL +A L+ + L+++LD + DPHN+GA LRSA A D Sbjct: 65 EFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACLRSADATGVD 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S S + V++K A GA E IP +R++NL A+ + G G + +++ L Sbjct: 125 FVLIPKDKSASITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAAGEAEHLL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + IAL++GAEG GLR T+E + L M G +++LNVS A V+LY Sbjct: 185 YAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQR 244 Query: 281 AK 282 + Sbjct: 245 GQ 246 >gi|38234534|ref|NP_940301.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae NCTC 13129] gi|38200797|emb|CAE50501.1| SpoU rRNA Methylase family protein [Corynebacterium diphtheriae] Length = 313 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 70/273 (25%), Positives = 131/273 (47%), Gaps = 13/273 (4%) Query: 20 YAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK 75 A+ R H YKK + + RH + + + G + V L+ P+ ++ + TK Sbjct: 39 KAEDREYHAAYKKKMERKRRDQGRHVKEETSELVVGRNPVVECLHAKVPATTLYIVEGTK 98 Query: 76 N-ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-------LD 127 N P+ VP +D + G +HQG+ L+ P T ++ Sbjct: 99 NDNRLSEAVQIAHSRGIPMIEVPRHEMDLMTG-NGMHQGIGLQIPPYKYTTVFDLIGRIN 157 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + +++VLD++ DP N+GA++RS AF G++ +R S S +AV ++++G + Sbjct: 158 STGEDGMVVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARL 217 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P + +N+T A+Q+ G+Q +GL + L+ + + +++G+EGKG+ ++ Sbjct: 218 PVAKATNITRAVQEFQQNGYQVVGLDAGGDATLDNYDGSGPVVIVVGSEGKGISRLVRDN 277 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 S+ + M G +++LN S AA V L Sbjct: 278 CDSLMSIPMAGWVESLNASVAAGVVLSEFARQR 310 >gi|126175841|ref|YP_001051990.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica OS155] gi|125999046|gb|ABN63121.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS155] Length = 246 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102 + ++G+H V A L + +I +L + + + ++ + +D Sbjct: 2 KKQDIIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLANQAKAFGTTIQVASRKALD 61 Query: 103 KIVGKEAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ L A L++LD V DPHN+GA LR+A A Sbjct: 62 DKA-ESSQHQGIVARVKAAKVLNERDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S +A ++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVQGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q +A+ +GAE KGLR ++E+ S+ + M G + +LNVS A + L+ Sbjct: 181 DCELYQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|215919079|ref|NP_819993.2| RNA methyltransferase [Coxiella burnetii RSA 493] gi|206583964|gb|AAO90507.2| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii RSA 493] Length = 270 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIVGK 107 +YG+H VS L+ ++I +L +N + + V + ++ + + Sbjct: 27 IYGIHAVSGVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKALGVKVILLSRTELNTLSNE 86 Query: 108 EAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+ + + + L LL++LD V DPHN+GA LRSA AF Sbjct: 87 K--HQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR 144 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K + + V+ K A GA E P+IR++NL+ + + G +G + +++ + Sbjct: 145 AVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLI 204 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ IA++LG+EG GLR T+E +A + + G +++LNVS A + LY Q Sbjct: 205 QEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQR 264 >gi|52783308|sp|Q83CW6|RLMB_COXBU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase Length = 250 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIVGK 107 +YG+H VS L+ ++I +L +N + + V + ++ + + Sbjct: 7 IYGIHAVSGVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKALGVKVILLSRTELNTLSNE 66 Query: 108 EAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+ + + + L LL++LD V DPHN+GA LRSA AF Sbjct: 67 K--HQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K + + V+ K A GA E P+IR++NL+ + + G +G + +++ + Sbjct: 125 AVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ IA++LG+EG GLR T+E +A + + G +++LNVS A + LY Q Sbjct: 185 QEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQR 244 >gi|302185448|ref|ZP_07262121.1| RNA methyltransferase [Pseudomonas syringae pv. syringae 642] gi|330899904|gb|EGH31323.1| RNA methyltransferase [Pseudomonas syringae pv. japonica str. M301072PT] gi|330978939|gb|EGH77998.1| RNA methyltransferase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 253 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 8/239 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ + + R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P LD S LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Q Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ + Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 245 >gi|66043847|ref|YP_233688.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. syringae B728a] gi|63254554|gb|AAY35650.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. syringae B728a] gi|330971568|gb|EGH71634.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 251 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 8/239 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ + + R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P LD S LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Q Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ + Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 245 >gi|309782123|ref|ZP_07676853.1| RNA methyltransferase, TrmH family [Ralstonia sp. 5_7_47FAA] gi|308919189|gb|EFP64856.1| RNA methyltransferase, TrmH family [Ralstonia sp. 5_7_47FAA] Length = 260 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 99/257 (38%), Gaps = 5/257 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ +K +++ + ++H + L GVH V+A L+ L+ R Sbjct: 6 SRDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVAAYLDAGHMPAQCLV--SERHIRHPE 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 A + TV + V G+ L ++LD + D Sbjct: 64 VAAVLDRVDPDTVILLADNLFGQLTTVVNGVDLMALVETPEGKLPQTIDADCVILDGIQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G+ILR A A + T + + SA ++A GA H+ + ++ Sbjct: 124 AGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAAMGAHFHLNIVEHCTFESVHSRLQ 183 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + SS +K+ + N + + G EG G+ + T+ + PG +++L Sbjct: 184 VPL---LATSSHAKQAVFDVPLNAPVGWVFGNEGAGVSEEWLSAVTTPVTIPQPGGMESL 240 Query: 264 NVSNAAAVALYITQNHF 280 NV+ AAA+ L+ Sbjct: 241 NVAAAAAICLFEAVRQR 257 >gi|332359265|gb|EGJ37086.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK49] Length = 242 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEALLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|325689008|gb|EGD31016.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK115] Length = 242 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|160916266|ref|ZP_02078473.1| hypothetical protein EUBDOL_02293 [Eubacterium dolichum DSM 3991] gi|158431990|gb|EDP10279.1| hypothetical protein EUBDOL_02293 [Eubacterium dolichum DSM 3991] Length = 241 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 8/238 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG + V AL +K+++++ + + P K + +D + + Sbjct: 4 YVYGKNVVK-ALLADKKKVYEIILSDGFRDKELEQEIRKRKIPCKVNSRKKMDTMFS-GS 61 Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+A + + T++ + L ++LD + DPHN+GAILR+ DG+I Sbjct: 62 NHQGIAAKIDDYKTYTIEELVAGVPKGKTPLFVMLDELEDPHNLGAILRTCDCVGVDGVI 121 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + +AK ++GA++ + ++NL L+ + GF G D+ + Q Sbjct: 122 IGKHRGVKLTPTVAKVSTGAIDTVKVAVVTNLAQTLKGLKKEGFWVAGADFDNSQDYRQA 181 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + L++G+EG G+ P ++ L M G + +LN S A AV LY Sbjct: 182 SYDMPLVLVVGSEGFGISPLVKKNCDFFVRLPMEGSVSSLNASVACAVLLYQIYAQRN 239 >gi|148358250|ref|YP_001249457.1| tRNA/rRNA methyltransferase [Legionella pneumophila str. Corby] gi|296105603|ref|YP_003617303.1| tRNA/rRNA methyltransferase [Legionella pneumophila 2300/99 Alcoy] gi|148280023|gb|ABQ54111.1| tRNA/rRNA methyltransferase [Legionella pneumophila str. Corby] gi|295647504|gb|ADG23351.1| tRNA/rRNA methyltransferase [Legionella pneumophila 2300/99 Alcoy] Length = 249 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 123/242 (50%), Gaps = 9/242 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 ++YG+H VSA L NP R I +L ++ + + + P++ + Q +++ Sbjct: 5 YVYGLHAVSALLANPHRMIKKLFVNQDRIDKRLHEFLVKAENAHVPIEKLSAQKMNQQFS 64 Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + +AL +A L+ + L+++LD + DPHN+GA LRSA A D Sbjct: 65 EFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACLRSADATGVD 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S + + V++K A GA E IP +R++NL A+ + G G + +++ L Sbjct: 125 FVVIPKDKSANITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAAGEAEHLL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + IAL++GAEG GLR T+E + L M G +++LNVS A V+LY Sbjct: 185 YAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQR 244 Query: 281 AK 282 + Sbjct: 245 GQ 246 >gi|312958662|ref|ZP_07773182.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens WH6] gi|311287205|gb|EFQ65766.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens WH6] Length = 251 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 117/240 (48%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ + + + + + + +D V Sbjct: 6 IYGVHAVEALLRHHPKRVKQVWLAEGRSEPRVQALVELATQNKVAIGQAERREMDVWV-- 63 Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P LD + LL+VLD V DPHN+GA LRSA A Sbjct: 64 EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGAL 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + V+ K A GA E IP + ++NL L+K+ G +G + +++ + Sbjct: 124 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWIVGTAGEAEVSI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + LI+GAEGKG+R T+E + HL M G + +LNVS A V L+ Q Sbjct: 184 YDQDLTGPTILIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEAQRQR 243 >gi|153840466|ref|ZP_01993133.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AQ3810] gi|149745870|gb|EDM57000.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AQ3810] gi|328472293|gb|EGF43163.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio parahaemolyticus 10329] Length = 247 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 114/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A HQG+ P + A + LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-HGANHQGIIARVKPAKQLNENDIDDILAQHETPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S +A ++K A GA E +P IR++NL ++ + G +G + ++ Sbjct: 122 VAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|260583736|ref|ZP_05851484.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC 700633] gi|260158362|gb|EEW93430.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC 700633] Length = 252 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 51/254 (20%), Positives = 104/254 (40%), Gaps = 8/254 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + K Q S+ + E + G H V A+ + I +L+ +++ + + Sbjct: 6 SHQNAMVKNYQKLQT-SKGRKKSEAYMIEGEHLVEEAIQSNI-SIQRLVVSEDTIQFYE- 62 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 +P V + +K+ +QG+ P ++ + LL D V D Sbjct: 63 --KWTKSYPTMFVSKEVFEKLS-MTQTNQGILAIVPLEKKPLVEVPQGRYLL--ADAVQD 117 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+R+A A D ++ + + + +S G+ H+ + + + Sbjct: 118 PGNLGTIIRTADAAGFDAVVLGEGCVDLYNDKVVRSMQGSQFHVAIYHENLMDVYGKLKE 177 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + K + D +A+++G EG G+R + E+A + + M G ++L Sbjct: 178 NDIPIAVTALHRDAKDFKWLTGRDSVAIVVGNEGNGVRDELIESADFIIQIPMFGQAESL 237 Query: 264 NVSNAAAVALYITQ 277 NV+ A V +Y T+ Sbjct: 238 NVAIATGVLMYQTR 251 >gi|290579663|ref|YP_003484055.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans NN2025] gi|254996562|dbj|BAH87163.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans NN2025] Length = 248 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 119/243 (48%), Gaps = 9/243 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +YGVH V +L K++ + D P+ P +T+ + Sbjct: 8 ENTDIVYGVHAVIESLQANTGHKLYIQNDLRGKNVDKIKDLAAEKKVPISWTPKKTLSDM 67 Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K AVHQG L + + ++ LL++LD +NDPHN G+ILR+A A + Sbjct: 68 T-KGAVHQGFILHVSAFAYTEFEMLLKKAEREDNPLLLILDELNDPHNFGSILRTADATN 126 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII K + + V+AK+++GA+EHIP R++NL AL K+ + GF G + Sbjct: 127 VTGIIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLGQALDKLKAAGFWIFGTDMNGTP 186 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + K+ALI+G EG+G+ ++ M + M G +++LN S AAA+ +Y Sbjct: 187 STQWNT-SGKLALIIGNEGRGISHNIKKQVDEMVTIPMNGHVQSLNASVAAAILMYEVFR 245 Query: 279 HFA 281 + Sbjct: 246 NRK 248 >gi|238755910|ref|ZP_04617238.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia ruckeri ATCC 29473] gi|238705869|gb|EEP98258.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia ruckeri ATCC 29473] Length = 248 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 106/242 (43%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++ ++ K R V+ Q +D Sbjct: 2 SEIIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPVVAELEATGLVVQVASRQWLDSQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 V +A D S L+VLD V DPHN+GA LRSA A Sbjct: 62 VEGGVHQGIVARVREGRQYQENDLPGLLASVESPFLLVLDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A+ K ASGA E++P IR++NL L+ + +G + ++ Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIRVTNLARTLRVLQENNVWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEVVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|86610253|ref|YP_479015.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558795|gb|ABD03752.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 378 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 115/247 (46%), Gaps = 11/247 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTI 101 + E +YG TV AAL + + + K + + + V P+ + Sbjct: 102 ELEQEIIYGRQTVLAALKSQATLNRVWILPKLRYSPQFLSLLEEAKARGTVIDEVSPKRL 161 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSA 154 + + A HQG+A + P L+ + +L+VLD + DPHN+GAI RS Sbjct: 162 NALTA-GANHQGIAAQATPYQYVALEDLVERSRQAGPNPVLVVLDGIQDPHNLGAIARSV 220 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AF G++ +R + ++ + K A+GAL +P R+ NL AL+ + GF G +S Sbjct: 221 EAFGMQGMVIPQRRAAGVTSTVMKVAAGALSTLPVARVVNLNRALEYLKEQGFWVYGTTS 280 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P+ IAL++G+EG+G+ TQ + + + G ++LN S AA +ALY Sbjct: 281 RGADPIYSADFQRPIALVVGSEGEGISLLTQRHCDQLLSIPLAGRTESLNASVAAGIALY 340 Query: 275 ITQNHFA 281 + Sbjct: 341 EIHRQRS 347 >gi|319954252|ref|YP_004165519.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM 14237] gi|319422912|gb|ADV50021.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM 14237] Length = 269 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 96/269 (35%), Gaps = 6/269 (2%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 +S + K + KSR + N L G+ AL I + + Sbjct: 2 NSTKHISSLQNTLIKNVLVLKDKSRERKKTGNFILEGIREFELALK-GFYTIETVFYAEG 60 Query: 77 ALA--RLDWDANLPHPFPVKT-VPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDAVRNS 132 +++ PV V + KI +E LA+ + + L + Sbjct: 61 LFPESKIEELTATLAYQPVLISVSKEVYQKIAYRETTEGILAIAKAKTHILSELKFKNKN 120 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L++V + P NIGA+LR+A A + D +I +S I Sbjct: 121 PLVLVAEAPEKPGNIGALLRTADAANLDAVII-ANPKTDLYNPNIIRSSVGCVFTNPIAT 179 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 N T+ + + + + K A+++G E GL + E AT Sbjct: 180 GNTTEIIAFLKENNINIFCAALTASKVYTNTSFKTPSAIVVGTEATGLSEEWLENATQNI 239 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G I ++NVS +AA+ ++ + + Sbjct: 240 IIPMEGEIDSMNVSVSAAILIFEAKRQRS 268 >gi|229175269|ref|ZP_04302784.1| RNA methyltransferase, TrmH [Bacillus cereus MM3] gi|228608101|gb|EEK65408.1| RNA methyltransferase, TrmH [Bacillus cereus MM3] Length = 265 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 100/277 (36%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + + ++ + +S Sbjct: 108 ESEVALADGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPVVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGSGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + ++ + G ++LNV+ AA + Y Q Sbjct: 223 SQEILAKSDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|229588085|ref|YP_002870204.1| 23s rRNA (guanosine-2'-o-)-methyltransferase [Pseudomonas fluorescens SBW25] gi|229359951|emb|CAY46805.1| 23s rRNA (guanosine-2'-o-)-methyltransferase [Pseudomonas fluorescens SBW25] Length = 251 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ + + + + + + +D V Sbjct: 6 IYGVHAVEALLRHHPKRVKQVWLAEGRSEPRVQALVELATQNKVAIGQAERREMDVWV-- 63 Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P LD + LL+VLD V DPHN+GA LRSA A Sbjct: 64 EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGAL 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + V+ K A GA E IP + ++NL L+K+ G +G + +++ + Sbjct: 124 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVSI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + LI+GAEGKG+R T+E + HL M G + +LNVS A V L+ + Sbjct: 184 YDQDLTGPTILIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEARRQR 243 >gi|94500543|ref|ZP_01307074.1| RNA methyltransferase, TrmH family, group 3 [Oceanobacter sp. RED65] gi|94427333|gb|EAT12312.1| RNA methyltransferase, TrmH family, group 3 [Oceanobacter sp. RED65] Length = 246 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 12/244 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDK 103 + ++G+H V L ++ ++ K + ++ V +D Sbjct: 2 NDEIVFGIHAVKNLLKRSPERVREIFLQKGRDDERLMDIVQLANKNSINLQAVKKTVLDD 61 Query: 104 IVGKEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ P+ S LD++ L+VLD V DPHN+GA LR+A A Sbjct: 62 RA--QGNHQGVIARAKPVQSKDENQLLQQLDSLDEPAFLLVLDSVTDPHNLGACLRTADA 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I K + +A ++K A GA E +P+ +++NL ++++ G G + ++ Sbjct: 120 AGVHGVIAPKDKAVGLTATVSKVACGAAESVPFYQVTNLARTMKELQERGIWLYGTAGEA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + + IA+++GAEGKGLR T+E + ++ M G + +LNVS A V L+ Sbjct: 180 SESVFKTDLKGPIAIVMGAEGKGLRRLTREACDHLINIPMAGDVSSLNVSVATGVCLFEA 239 Query: 277 QNHF 280 Sbjct: 240 VRQR 243 >gi|29346770|ref|NP_810273.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|253572226|ref|ZP_04849629.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6] gi|298386583|ref|ZP_06996139.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 1_1_14] gi|29338667|gb|AAO76467.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|251838001|gb|EES66089.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6] gi|298260960|gb|EFI03828.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 1_1_14] Length = 247 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGLLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I HQG+ + + L + ++LD + D N GAI R+ Sbjct: 63 IT--RKNHQGVVAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I R S S +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 121 AAVDAVIIPARGSVSVNADAMKTSAGALHTLPVCREQNLRATLQYLKDSGFRIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE G+ + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPMCIIMGAEDTGVSYDHLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRN 245 >gi|329925610|ref|ZP_08280451.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. HGF5] gi|328939739|gb|EGG36081.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. HGF5] Length = 250 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 119/246 (48%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102 E + G H+V+ AL + R I ++ +NA L ++ V + +D Sbjct: 3 QEEEVVAGKHSVTEALKSG-RTINKIWIAENAQKHLTLPIIAEAKKLGIVIQHVDKRKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V HQG+ + AP +D L++LD + DPHN+G+ILR+A Sbjct: 62 QMV-PGVQHQGVVAQAAPYAYVEVDDLLKAAEEKGEPPFLLLLDEIEDPHNLGSILRTAD 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 G+I KR S +A ++K+++GA+E++P R++NL + ++ G +G D Sbjct: 121 CTGAHGVILPKRRSAQVTATVSKTSAGAVEYVPVARVTNLGQTIDQLKEMGVWVVGTVVD 180 Query: 216 SKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + E+ + +A+++G E KG+ +E + L M G I +LN S AA V +Y Sbjct: 181 AVQELYDTEVFDGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGKINSLNASVAAGVVMY 240 Query: 275 ITQNHF 280 Sbjct: 241 EVLRRR 246 >gi|327460672|gb|EGF07007.1| RNA methyltransferase [Streptococcus sanguinis SK1] gi|332359937|gb|EGJ37751.1| RNA methyltransferase [Streptococcus sanguinis SK1056] Length = 242 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|125718827|ref|YP_001035960.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK36] gi|125498744|gb|ABN45410.1| tRNA (Guanosine-2'-O-)-methyltransferase, TrmH family, putative [Streptococcus sanguinis SK36] gi|327488747|gb|EGF20546.1| RNA methyltransferase [Streptococcus sanguinis SK1058] Length = 242 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL K++ D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLCGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|217965671|ref|YP_002351349.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes HCC23] gi|217334941|gb|ACK40735.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes HCC23] gi|307569780|emb|CAR82959.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes L99] Length = 251 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 13/248 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQ 99 + E ++ G + V L + R I ++ + + + V+ VP Q Sbjct: 2 EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKDRKIQVQFVPKQ 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152 I+K+V HQG+A + A LD ++LD + DPHN+G+I+R Sbjct: 61 KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A + GII KR S + +AK+++GA+E++P +R++N+ ++++ G G Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +A+++G+EG G+ +E + HL M G + +LN S AA++ Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238 Query: 273 LYITQNHF 280 LY Sbjct: 239 LYEVYRKR 246 >gi|319407885|emb|CBI81537.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella schoenbuchensis R1] Length = 279 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 94/256 (36%), Gaps = 4/256 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K +++ NQK ++ ++ G+ V ALN +L+ + + Sbjct: 16 SNPIIKSLKALNQK-KNRNRDGVFMAEGLKLVIDALNLGWAIQTLILSKNKVGNTVIENI 74 Query: 86 NL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 V + ++ I ++ + + + + + LD V Sbjct: 75 AARTVARGGFVIKASQKVMESITRRDNPQTVVGIFKQQWHPIEMIKGLTQDVYIALDRVR 134 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+A A G++ + S ++ G++ +P R S Sbjct: 135 DPGNLGTIIRTADAVGAKGVMLIGETTDPFSPETVRATMGSIFSVPLYRFSESAFLNWST 194 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 H G S ++K I L++G E +GL + + + G + Sbjct: 195 HFKGIIIGTHLKTSVDYRSVDLKKGPIILLMGNEQQGLPDVLADRCDQLVRIPQNGRADS 254 Query: 263 LNVSNAAAVALYITQN 278 LN++ A AV LY + Sbjct: 255 LNLAIATAVMLYEIRR 270 >gi|315612889|ref|ZP_07887800.1| RNA methyltransferase [Streptococcus sanguinis ATCC 49296] gi|315314999|gb|EFU63040.1| RNA methyltransferase [Streptococcus sanguinis ATCC 49296] Length = 242 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKRVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|325126130|gb|ADY85460.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 254 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 99/256 (38%), Gaps = 5/256 (1%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 + N+ K + QK ++ + + G H V AL S K ++LAT+ AL+R Sbjct: 3 ERTSVNNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALKA-SVKYREILATEAALSR 60 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 L + + + + + LL D Sbjct: 61 LAQLGLAYDEGKLIKISQSVASHLSSTKNSQDIFMTVKINRPKHFAFSYGKWVLL---DD 117 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G I+R+A A DG+I + + + + +S G+ H+ I+ Sbjct: 118 LADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIKADLPDAIAS 177 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + L + K L + ++ALI+G E G+ P+ + A ++ + G Sbjct: 178 LKAADIPVYASLLDPAAKQLGDFVPVAQVALIIGNEAHGVSPEIEALADEKLYIPIKGRA 237 Query: 261 KALNVSNAAAVALYIT 276 ++LN + AA + +Y Sbjct: 238 ESLNAAVAAGIMIYHF 253 >gi|168491355|ref|ZP_02715498.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC0288-04] gi|183574511|gb|EDT95039.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC0288-04] Length = 242 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENSLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|15901307|ref|NP_345911.1| spoU rRNA methylase family protein [Streptococcus pneumoniae TIGR4] gi|111657374|ref|ZP_01408131.1| hypothetical protein SpneT_02001428 [Streptococcus pneumoniae TIGR4] gi|221232182|ref|YP_002511335.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC 700669] gi|225854898|ref|YP_002736410.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae JJA] gi|14972946|gb|AAK75551.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae TIGR4] gi|220674643|emb|CAR69212.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC 700669] gi|225722312|gb|ACO18165.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae JJA] Length = 242 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ +I Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEIT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 123 GVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|313203183|ref|YP_004041840.1| RNA methyltransferase, trmh family, group 3 [Paludibacter propionicigenes WB4] gi|312442499|gb|ADQ78855.1| RNA methyltransferase, TrmH family, group 3 [Paludibacter propionicigenes WB4] Length = 255 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 112/250 (44%), Gaps = 13/250 (5%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVP 97 ++ +PE ++G+ V A+ I ++L ++ + L + PV+ VP Sbjct: 5 KNKRRPEKDMIFGIRAVIEAIQAGKE-IDKILMRRDMTSELSRELFAALNGLQIPVQYVP 63 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150 + ++K+ HQG +P+ ++ + ++VLD V D N GAI Sbjct: 64 LEKLNKMT--VKNHQGAIAFISPVAYQRIEDIIPGIYEEGRMPFIVVLDGVTDVRNFGAI 121 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 R+ D I+ + S + K+++GAL IP R NL +AL+ + S G + + Sbjct: 122 ARTCECAGVDAIVIPTKGGASITGDAIKTSAGALLSIPVCREENLGNALKFIVSSGIKLV 181 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S + K + + IA+I+GAE +G+ P M + M G I +LNVS AA Sbjct: 182 AASEKATKNYTEAALTEPIAIIMGAEDEGVNPDHLRLCDEMVSIPMLGSIDSLNVSVAAG 241 Query: 271 VALYITQNHF 280 V +Y Sbjct: 242 VLIYEAVRQR 251 >gi|303240980|ref|ZP_07327490.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio cellulolyticus CD2] gi|302591405|gb|EFL61143.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio cellulolyticus CD2] Length = 333 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 64/292 (21%), Positives = 122/292 (41%), Gaps = 17/292 (5%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------PENLFLYGVHTVSA 59 + +E+ R R + + FN++ L G ++V Sbjct: 43 RSNERPERSGGRPERSNERPERSSGRPERFNERPPRIENKEMEDLNEGLDKLEGRNSVLE 102 Query: 60 ALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 A+ + KI K + V+ ++DKI + HQG+ Sbjct: 103 AIKSDRTINKILVSKGDKEGSIKQIIALAREKGIIVQETDRVSLDKISTTHS-HQGVIAF 161 Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 A +D + + +++LD + DPHN+G+ILR+A A G++ KR + Sbjct: 162 VAVKDYVEVDDILEIAQSKGEAPFIIILDGITDPHNLGSILRTANAVGAHGVVIPKRRAI 221 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 +A ++K+++GA+E++P R++N+ + + +G +K + IA Sbjct: 222 GLTAAVSKASAGAIEYVPVARVTNIAQTIDYLKEQNLWVVGTDQSGEKSFYEIDLKGPIA 281 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 L++G+EG+G+ E + +L M G I +LN + A A+ +Y K Sbjct: 282 LVIGSEGEGMGKLVSEKCDFVVNLPMKGQISSLNAAVAGAIVMYEILKQRGK 333 >gi|24378679|ref|NP_720634.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans UA159] gi|24376542|gb|AAN57940.1|AE014868_2 putative tRNA/rRNA methyltransferase [Streptococcus mutans UA159] Length = 248 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 9/243 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +YGVH V +L K++ + D P+ P +T+ + Sbjct: 8 ENTDIVYGVHAVIESLQANTGHKLYIQNDLRGKNVDKIKDLAAEKKVPISWTPKKTLSDM 67 Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K AVHQG L + + ++ LL++LD +NDPHN G+ILR+A A + Sbjct: 68 T-KGAVHQGFILHVSAFAYTEFEMLLKKAEREDNPLLLILDELNDPHNFGSILRTADATN 126 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII TK + + V+AK+++GA+EHIP R++NL AL K+ + GF G + Sbjct: 127 VTGIIITKHRAVGVTPVVAKTSTGAVEHIPIARVTNLGQALDKLKAAGFWIFGTDMNGTP 186 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + K+ALI+G EG+G+ ++ M + M G +++LN S AAA+ +Y Sbjct: 187 STQWNT-SGKLALIIGNEGRGISHNIKKQVDEMVTIPMNGHVQSLNASVAAAILMYEVFR 245 Query: 279 HFA 281 + Sbjct: 246 NRK 248 >gi|117617585|ref|YP_855245.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117558992|gb|ABK35940.1| RNA methyltransferase, TrmH family, group 3 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 249 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANL--PHPFPVKTVPPQTIDKI 104 +YG+H VSA L + ++ A K RL V++V +T+D Sbjct: 3 TELIYGIHAVSALLERTPERFIEVWALKGRDDDRLQPLLAELDALGLKVQSVNRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLS----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 + HQG+ L + L+VLD V DPHN+GA LRSA Sbjct: 63 A-EGNNHQGIMARVKEAPKLAEHDLASLLDKLAEQQTQPFLLVLDGVTDPHNLGACLRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I + + + ++ K A GA E +P I+++NL +L+++ G +G + Sbjct: 122 DAAGVHAVIVPRDKATGLTPIVRKVACGAAEVVPLIQVTNLARSLRELQERGVWIVGTAG 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + Q +AL++GAEGKG+R T+E + + M G + +LNVS A V L+ Sbjct: 182 EADHDVYQAKLTGPMALVMGAEGKGMRRLTREHCDELVSIPMAGAVSSLNVSVATGVCLF 241 Query: 275 ITQNHF 280 Sbjct: 242 EAVRQR 247 >gi|148655189|ref|YP_001275394.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus sp. RS-1] gi|148567299|gb|ABQ89444.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus sp. RS-1] Length = 262 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 95/262 (36%), Gaps = 11/262 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++ K+++S + L L GV V+ AL + + L A + L Sbjct: 4 SPANQHVKRIRSLASDRHERRRERMLVLEGVRLVADALESGATLTLTLYA-PDQLQLTPA 62 Query: 84 DANLPHPFPV----KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 A L PQ + L S A LL+V+D Sbjct: 63 GAALLQKLRYLPASYEATPQVVAAASDTVHPQG-----VVALASWPHVAPGKPGLLLVID 117 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N+G +LRSA A ++ + + + +SA GA + + + Sbjct: 118 AVQDPGNLGTLLRSAEAVGVAQVLCSVGTVDLYAPKVVRSAMGAHFRLAMEQDLSWDAIG 177 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 +++ S +++ P AL++G E GL + AT + M G Sbjct: 178 ERLASVDHVYA-ADPEARMPYYAADWRQPSALLVGNEAHGLSDAARRLATKQIAIPMRGG 236 Query: 260 IKALNVSNAAAVALYITQNHFA 281 ++LNV+ AA+V L+ Sbjct: 237 TESLNVAVAASVILFEALRQRT 258 >gi|312621714|ref|YP_004023327.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor kronotskyensis 2002] gi|312202181|gb|ADQ45508.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor kronotskyensis 2002] Length = 253 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 104/242 (42%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL + + KI ++ + +A + D VK V IDK+ + Sbjct: 4 IEGKNPVKEALKSGA-KITEVYISTSAKDKETAKIIDLCRQSGVVVKFVDKSKIDKMA-Q 61 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+ +D + L++LD + DP N G+I+RSA Sbjct: 62 TKNPQGVIAIAHEFEYCDIDDILFEAKKSGEEPFLVLLDGITDPQNFGSIIRSAHLCGVH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ R S + + K+++GA+E++ R+ NL ++++ G ++ KP+ Sbjct: 122 GIVIETRNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFAADANGSKPV 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G+EGKG+ +E A + + G + + N S AA + + Sbjct: 182 YECDFTIPTCVVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQR 241 Query: 281 AK 282 K Sbjct: 242 LK 243 >gi|323492117|ref|ZP_08097279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio brasiliensis LMG 20546] gi|323313678|gb|EGA66780.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio brasiliensis LMG 20546] Length = 245 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKI 104 N ++YG+H V A L P R I + RL N + ++ + +T+D+ Sbjct: 3 NEYIYGIHAVKAVLSREPERFIEAFVLKGRQDDRLLPILNELNVCGVSIQQMTRKTLDEK 62 Query: 105 VGKEAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A HQG+ + A S LL+VLD V DPHN+GA LR+A A Sbjct: 63 AS-GANHQGIMARVKPAKQLNEHDLDDIIAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDRSANITATVSKVACGAAEMVPLVRVTNLARTMRTLQEQGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGTVSSLNVSVASGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|260770911|ref|ZP_05879840.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio furnissii CIP 102972] gi|260614148|gb|EEX39338.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio furnissii CIP 102972] gi|315178957|gb|ADT85871.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio furnissii NCTC 11218] Length = 246 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 115/243 (47%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V+A L + + K RL N ++ + + +D Sbjct: 3 NEFIYGIHAVNAVLERDPARFVEAYVLKGRQDDRLLPVLNELARLGISIQEMHRKALDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQG+ + P + A LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-QGANHQGVIAKVKPAKQLNENDLDDIIAQHPQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A + L+ Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVR 241 Query: 279 HFA 281 + Sbjct: 242 QRS 244 >gi|227498998|ref|ZP_03929135.1| RNA methyltransferase [Acidaminococcus sp. D21] gi|226904447|gb|EEH90365.1| RNA methyltransferase [Acidaminococcus sp. D21] Length = 249 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + + G + V AL P +K+ L + + V+ V + +D++ Sbjct: 2 SDIIAGRNAVREALRGTRPIQKVLVLESGHGGSFEEILSLCVKRHVAVERVNKERLDRLS 61 Query: 106 GKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 HQG+ + + LD L++LD + DP NIGA++RSA A Sbjct: 62 PDVR-HQGVVAVGSAVAFRDLDEVLEGVAQKGKVPFLLLLDELQDPQNIGALIRSANAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D +I +R S AV+AK ++GALEH P + ++NL ++ + GF +G D K Sbjct: 121 VDAVIVPQRRSAPLGAVVAKISAGALEHEPVVSVTNLVRTMKDLKKRGFWIVGADMDGKD 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L++GAEGKG+ +E + + M G +++LN S A + LY Sbjct: 181 LYFDADLTGPLVLVVGAEGKGVGRLVKENCDFLVRIPMLGQVQSLNASVAGGILLYEITR 240 Query: 279 HFA 281 Sbjct: 241 QRI 243 >gi|219666287|ref|YP_002456722.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense DCB-2] gi|219536547|gb|ACL18286.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense DCB-2] Length = 271 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 52/286 (18%), Positives = 99/286 (34%), Gaps = 29/286 (10%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 +++ ++E++ + + H K + + + G V L Sbjct: 1 MLTSLQNEQVKYVVNLH-------------------KRKFREENGEFLIEGWRFVEEGLA 41 Query: 63 NPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + K+F KN +A PV V + + K+ E LA+ Sbjct: 42 RGAHLTKVFFCSECKNESWPQLAEALKVKGVPVIEVDERVLRKMSDTENPQGILAVVKQS 101 Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + +L++LD V DP N G ILR+A+A + T+ + Sbjct: 102 RWTWDDFIEIVNPAGRSAIPMLLILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDLYN 161 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + +S GA+ I + + K+ + + L + +AL++ Sbjct: 162 LKVLRSTMGAIF-SLNIVTHCQPEEILKVCRSHKIPVFVGDVEGTDLYETHFAQPMALVV 220 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 G EG G Q + M +++LNV+ A + LY + Sbjct: 221 GNEGNGPSAAFQGPGVKRITIPMSHQVESLNVAMATGIILYEVRRR 266 >gi|28899580|ref|NP_799185.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|260361407|ref|ZP_05774469.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus K5030] gi|260876679|ref|ZP_05889034.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AN-5034] gi|260896628|ref|ZP_05905124.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus Peru-466] gi|260900887|ref|ZP_05909282.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AQ4037] gi|52783311|sp|Q87L11|RLMB_VIBPA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|28807816|dbj|BAC61069.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD 2210633] gi|308086301|gb|EFO35996.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus Peru-466] gi|308093965|gb|EFO43660.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AN-5034] gi|308106500|gb|EFO44040.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AQ4037] gi|308112895|gb|EFO50435.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus K5030] Length = 247 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A HQG+ + A + LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-HGANHQGIIARVKVAKQLNENDIDDILAQHETPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S +A ++K A GA E +P IR++NL ++ + G +G + ++ Sbjct: 122 VAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|325695531|gb|EGD37431.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK150] Length = 242 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|300813179|ref|ZP_07093553.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495837|gb|EFK30985.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 254 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 97/256 (37%), Gaps = 5/256 (1%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 + N+ K + QK ++ + + G H V AL S K ++LAT+ AL+R Sbjct: 3 ERTSVNNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALKA-SVKYREILATEAALSR 60 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 L + + + + + LL D Sbjct: 61 LAQLGLAYDESKLIKISQSVASHLSSTKNSQDIFMTVKINQSEHFAFSYGKWVLL---DD 117 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G I+R+A A DG+I + + + + +S G+ H+ I+ Sbjct: 118 LADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIKADLPDAIAS 177 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + L + K L ++ALI+G E G+ P+ A ++ + G Sbjct: 178 LKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIAALADEKLYIPIKGRA 237 Query: 261 KALNVSNAAAVALYIT 276 ++LN + AA + +Y Sbjct: 238 ESLNAAVAAGIMIYHF 253 >gi|291542636|emb|CBL15746.1| rRNA methylases [Ruminococcus bromii L2-63] Length = 260 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 102/257 (39%), Gaps = 4/257 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ + K + +++ + GV A+ + + I A++ A + Sbjct: 6 SKDNSNIKNAVKLRKSAKYRRESGLFIAEGVRICMDAMLSKAH-IDTFFASEKASEKYAD 64 Query: 84 DANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 D + + V + +++ E+ L + A + D ++ + LD++ Sbjct: 65 DFSNLQKYSDKTFIVSDKIFNQMCDTESPQGFLCVIKALDKTACFDKIKTGDKFLALDNL 124 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G ILR+A A + GI+ + S + + + GA+ +P++ + Sbjct: 125 QDPGNLGTILRTAEALNVTGIVLSADCCDIYSPKVVRGSMGAVFRLPFVVSDTI-SGYLN 183 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 HS + S S + + +G EG GL+ +T + M G + Sbjct: 184 AHSELESYAAVVSASADKITTTPFVSPCIVAVGNEGNGLKEETISACKHKITIPMEGRAE 243 Query: 262 ALNVSNAAAVALYITQN 278 +LN + AA++ ++ Sbjct: 244 SLNAAVAASIIMWEMMK 260 >gi|309782307|ref|ZP_07677034.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia sp. 5_7_47FAA] gi|308918925|gb|EFP64595.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia sp. 5_7_47FAA] Length = 250 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 7/239 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 L G H V+A L + ++ I ++ N R D A + + I G Sbjct: 6 LLIGFHAVTARLRHGAKSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADADRLRGIAG 65 Query: 107 KEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A + L LD + + LL+VLD V DPHN+GA LR A A + Sbjct: 66 TDRHQGVVAKAESLSLALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADAAGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Q Sbjct: 126 IAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQERGVWVIGTADEAEQDLYQ 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 A+++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ A Sbjct: 186 ADFKGPTAIVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244 >gi|187928166|ref|YP_001898653.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J] gi|187725056|gb|ACD26221.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia pickettii 12J] Length = 250 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 7/239 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 L G H V+A L + ++ I ++ N R D A + + I G Sbjct: 6 LLIGFHAVTARLRHGAKSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADADRLRGIAG 65 Query: 107 KEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A + L LD + + LL+VLD V DPHN+GA LR A A + Sbjct: 66 TDRHQGVVAKAESLSLALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADAAGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Q Sbjct: 126 IAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQERGVWVIGTADEAEQDLYQ 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 A+++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ A Sbjct: 186 ADFKGPTAIVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244 >gi|116514430|ref|YP_813336.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093745|gb|ABJ58898.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 254 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 98/256 (38%), Gaps = 5/256 (1%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 + N+ K + QK ++ + + G H V AL S K ++LAT+ AL+R Sbjct: 3 ERTSVNNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALKA-SVKYREILATEAALSR 60 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 L + + + + + LL D Sbjct: 61 LAQLGLAYDEGKLIKISQSVASHLSSTKNSQDIFMTVKINRPKHFAFSYGKWVLL---DD 117 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G I+R+A A DG+I + + + + +S G+ H+ I+ Sbjct: 118 LADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIKADLPDAIAS 177 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + L + K L ++ALI+G E G+ P+ + A ++ + G Sbjct: 178 LKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIEALADEKLYIPIKGRA 237 Query: 261 KALNVSNAAAVALYIT 276 ++LN + AA + +Y Sbjct: 238 ESLNAAVAAGIMIYHF 253 >gi|330828261|ref|YP_004391213.1| TrmH family RNA methyltransferase [Aeromonas veronii B565] gi|328803397|gb|AEB48596.1| RNA methyltransferase, TrmH family, group 3 [Aeromonas veronii B565] Length = 249 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 14/246 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 +YG+H V+A L + ++ A K RL V++V +T+D Sbjct: 3 TELIYGIHAVTALLERTPERFIEVWALKGRDDDRLQPLLTELESLGLKVQSVNRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLS----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 + HQG+ L A ++ L+VLD V DPHN+GA LRSA Sbjct: 63 A-EGNNHQGIMARVKEAPKLAEHDLASLLDELAAQQSQPFLLVLDGVTDPHNLGACLRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I + + + ++ K A GA E +P I+++NL L+++ G +G + Sbjct: 122 DAAGAHAVIVPRDKATGLTPIVRKVACGAAEVVPLIQVTNLARTLRELQERGVWIVGTAG 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L Q +AL++GAEGKG+R T+E + + M G + +LNVS A V L+ Sbjct: 182 EADHDLYQAKLTGPMALVMGAEGKGMRRLTREHCDELVSIPMAGAVSSLNVSVATGVCLF 241 Query: 275 ITQNHF 280 Sbjct: 242 EAVRQR 247 >gi|313635070|gb|EFS01420.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri FSL N1-067] Length = 251 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 13/248 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQ 99 + E ++ G + V L + R I ++ + + V+ VP Q Sbjct: 2 EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGTQKGVLKQVLTLAKERKVQVQFVPKQ 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152 I+K+V VHQG+A + A LD ++LD + DPHN+G+I+R Sbjct: 61 KIEKVVS--GVHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A + GII KR + + +AK+++GA+E++P +R++N+ ++++ G G Sbjct: 119 TADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +A+++G+EG G+ +E + HL M G + +LN S AA++ Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238 Query: 273 LYITQNHF 280 LY Sbjct: 239 LYEVYRKR 246 >gi|293604389|ref|ZP_06686796.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Achromobacter piechaudii ATCC 43553] gi|292817266|gb|EFF76340.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Achromobacter piechaudii ATCC 43553] Length = 245 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 7/238 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L G H V A L + I ++ ++ + + V VP + +D + Sbjct: 6 VLAGFHAVVARLRHAPESIKEIYVEASRRDKRMQTFIEQAEKAGRRVHPVPMERLDGLSR 65 Query: 107 KEAVHQG----LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + A + LD + LL++LD V DPHN+GA LR+A A + Sbjct: 66 GTRHQGVVALADERQLAVDVDEVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + + +A + + A GA + +PY+ ++NL ++ + G +G + + + Sbjct: 126 IAPRDRAVGLNATVQRVACGAADTVPYLMVTNLARTMRGLKDRGVWLVGTDDQATDSMHK 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A ++GAEG+G+R T+ET + ++ M G +++LNVS A+AV LY T Sbjct: 186 IDARQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYETVRQR 243 >gi|290956646|ref|YP_003487828.1| rRNA methyltransferase [Streptomyces scabiei 87.22] gi|260646172|emb|CBG69265.1| putative rRNA methyltransferase [Streptomyces scabiei 87.22] Length = 276 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 49/267 (18%), Positives = 96/267 (35%), Gaps = 6/267 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 ++ + ++++Q+ + + + GV ++ A+ + L L+ Sbjct: 3 VQRISTRNARFQQLQTLLNNRTKRGRAKEFLVQGVRPITMAVEHGWTVRSLLYDASRPLS 62 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-TLDAVRNSQLLMVL 138 R D + PQ + ++ K + + VR+ L +V Sbjct: 63 RWAEDLLRGVGAERVAMEPQLLAELSEKADGAAEVLAVVEMAPDSLSRIKVRDDFLGLVF 122 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-----HIPYIRIS 193 D P NIG+I+RSA AF G+I T + ++++G+ Sbjct: 123 DRPTQPGNIGSIVRSADAFGASGLIVTGHAADPYDPKSVRASTGSFFAVPVVRSQSHHEV 182 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 ++ +G D + + + L++G E GL +E + Sbjct: 183 MEWLEKERAQGRPVAVVGTDEDGDAEVSEFDLTQPVLLLIGNETAGLSSAWRELCDQVIS 242 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 + M G +LN SNAA+V LY + Sbjct: 243 IPMTGSASSLNASNAASVVLYEARRQR 269 >gi|330807239|ref|YP_004351701.1| 23S rRNA (guanosine-2-o-)-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375347|gb|AEA66697.1| Putative 23S rRNA (guanosine-2-o-)-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 252 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 72/241 (29%), Positives = 115/241 (47%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ + + + + + + +D V Sbjct: 6 IYGVHAVEALLRHHPKRVKQVWLAEGRSEPRVQALVELATQNKVAIGQAERREMDVWV-- 63 Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ + +P LD + LL+VLD V DPHN+GA LRSA A Sbjct: 64 EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGAL 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ + Sbjct: 124 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVSI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + LI+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 184 YDQDLTGPTILIMGAEGKGMRRLTREHCDYLVKLPMAGSVSSLNVSVATGVCLFEALRQR 243 Query: 281 A 281 + Sbjct: 244 S 244 >gi|313124170|ref|YP_004034429.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280733|gb|ADQ61452.1| TRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 254 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 96/256 (37%), Gaps = 5/256 (1%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 + N+ K + QK ++ + + G H V AL S K ++LAT+ AL+R Sbjct: 3 ERTSVNNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALKA-SVKYREILATEAALSR 60 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 L + + + + LL D Sbjct: 61 LAQLGLAYDEGKLIKISQSVASHFSSTKNSQDIFMTVKINQSEHFFFSYGKWVLL---DD 117 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G I+R+A A DG+I + + + + +S G+ H+ I+ Sbjct: 118 LADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIKADLPDAIAS 177 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + L + K L ++ALI+G E G+ P+ A ++ + G Sbjct: 178 LKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIAALADEKLYIPIKGRA 237 Query: 261 KALNVSNAAAVALYIT 276 ++LN + AA + +Y Sbjct: 238 ESLNAAVAAGIMIYHF 253 >gi|240146531|ref|ZP_04745132.1| RNA methyltransferase, TrmH family, group 3 [Roseburia intestinalis L1-82] gi|257201342|gb|EEU99626.1| RNA methyltransferase, TrmH family, group 3 [Roseburia intestinalis L1-82] gi|291535116|emb|CBL08228.1| rRNA methylase, putative, group 3 [Roseburia intestinalis M50/1] Length = 246 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 108/240 (45%), Gaps = 9/240 (3%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K+F L ++ R H V V + +D++ + Sbjct: 8 IEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVRTIVREAKKHDTIVHFVEKERLDQLSETK 67 Query: 109 AVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A+ A + D ++ L +LD++ DPHN+GAI+R+A G+ Sbjct: 68 KHQGVIAVAAAYEYAEVEDMLKLAEEKGEPPFLFILDNIEDPHNLGAIIRTANLAGAHGV 127 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I KR + +A +AK+++GA+ + P +++NLT ++++ G + + Sbjct: 128 IIPKRRAVGLTATVAKTSAGAINYTPVAKVTNLTATMKELKDKGMWFVCA-DMDGTCMYD 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 I L++G+EG+G+ +E +A + M G I +LN S AA V Y + Sbjct: 187 LDLKGPIGLVIGSEGEGVGRLVRENCDFVASIPMKGDIDSLNASVAAGVLAYEIVRQRMR 246 >gi|225866536|ref|YP_002751914.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB102] gi|225786909|gb|ACO27126.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB102] Length = 254 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 1 MKNIDSIQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 42 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + + ++ + +S Sbjct: 97 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 153 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPTGSFALIVGNEGNGV 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 212 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248 >gi|196044916|ref|ZP_03112150.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB108] gi|229186815|ref|ZP_04313970.1| RNA methyltransferase, TrmH [Bacillus cereus BGSC 6E1] gi|196024404|gb|EDX63077.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB108] gi|228596552|gb|EEK54217.1| RNA methyltransferase, TrmH [Bacillus cereus BGSC 6E1] Length = 265 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSIQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + + ++ + +S Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPTGSFALIVGNEGNGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|210623156|ref|ZP_03293610.1| hypothetical protein CLOHIR_01560 [Clostridium hiranonis DSM 13275] gi|210153789|gb|EEA84795.1| hypothetical protein CLOHIR_01560 [Clostridium hiranonis DSM 13275] Length = 244 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 104/241 (43%), Gaps = 11/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V A+ N L++ K + ++ V +D++ Sbjct: 3 IIEGRNPVIEAIKNDRHIEKLLISNSSKEGSIKKIIAMAKEKKIVIQYVDRHKLDEMSTS 62 Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A HQG+ + + ++ +++LD + DPHN+G+I+R+A A Sbjct: 63 HA-HQGVIATISDYIYKDIEEVVREVKEKGEDPFIIILDEITDPHNLGSIIRTADAVGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ KR S + V+AK+++GA+E++P +++N+ + ++ + G Sbjct: 122 AVVIPKRRSVDITPVVAKASAGAVEYVPVCKVTNIVNTIKMLKEEGLWIAAA-DMDGGVF 180 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + L++G+EG G+ ++ + + M G + +LN S A + LY Sbjct: 181 YKQDLTGPLGLVVGSEGFGISRLVKQNCDFVVSMPMVGNVTSLNASVAGGILLYEVFRQR 240 Query: 281 A 281 Sbjct: 241 T 241 >gi|149196456|ref|ZP_01873511.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155] gi|149140717|gb|EDM29115.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155] Length = 265 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 88/259 (33%), Gaps = 6/259 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK----IFQLLATKNALARL 81 ++ K + ++ R+ + + + + G ++ A +N I + L Sbjct: 7 SNPRIKHIVKLRER-RYRDKEQTMIIEGFRSIYRAADNGVYPKELYICRDFFLGKNEDEL 65 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + KI ++ LAL + + LL+V + Sbjct: 66 IQKLQDEGGTQIFETEQNVFKKISYRDRPEGLLALTGYFRKQVDDLELSDPPLLVVAQSI 125 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 P N+G I+RSA DG+I +AS + I + D + Sbjct: 126 EKPGNLGTIIRSADGTGADGLILC-DKCTDLFNPNVITASTGMCFSLPIAEAASQDTINY 184 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + + + K IA+I+GAE GL + + ++ + M G Sbjct: 185 LKENNITILSATPHADKLYTDVDMTGPIAVIVGAEQYGLSEEWMKQSSINVKIPMLGKAD 244 Query: 262 ALNVSNAAAVALYITQNHF 280 +LNV+ A + LY Sbjct: 245 SLNVATATTLLLYEAVRQR 263 >gi|71735318|ref|YP_272875.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|289624605|ref|ZP_06457559.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|71555871|gb|AAZ35082.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae pv. phaseolicola 1448A] gi|320321875|gb|EFW77971.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076] gi|320331020|gb|EFW86994.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] gi|330865903|gb|EGH00612.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330984552|gb|EGH82655.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 253 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 8/239 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ + + R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P LD S LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Q Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ + Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 245 >gi|39936427|ref|NP_948703.1| RNA methyltransferase TrmH group 3 [Rhodopseudomonas palustris CGA009] gi|192292212|ref|YP_001992817.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas palustris TIE-1] gi|39650282|emb|CAE28805.1| putative rRNA methylase [Rhodopseudomonas palustris CGA009] gi|192285961|gb|ACF02342.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas palustris TIE-1] Length = 275 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 114/258 (44%), Positives = 158/258 (61%), Gaps = 1/258 (0%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + +++ R + F + R + LYG HTV+AAL NP RK +L T+N Sbjct: 7 NPRFSRRDGPPRGKPRPAGFRRDPRERDGDGPVILYGWHTVTAALANPQRKFRKLWLTEN 66 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 A RL + N+ + V P ID+ +G +AVHQG+ E PL P +D + +++ Sbjct: 67 AARRLAEE-NIDTRIAPEIVRPSEIDRQLGPDAVHQGMLAEADPLQGPRIDTLPQHGIVL 125 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD + DPHN+GAILRSA AF+ I+TT R+SP + VLAKSASGALE +P + + NL Sbjct: 126 VLDQITDPHNVGAILRSAAAFAVQAIVTTARHSPEATGVLAKSASGALELVPLVLVQNLA 185 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 AL +++ GF T+GL S+ L +AL+LGAEGKGLR T++T ++A L M Sbjct: 186 RALTELNDRGFLTVGLDSEGDDDLAAVELRQPLALVLGAEGKGLRQLTRQTCNTVARLDM 245 Query: 257 PGIIKALNVSNAAAVALY 274 PG IK+LNVSNAAA+ALY Sbjct: 246 PGEIKSLNVSNAAALALY 263 >gi|319901728|ref|YP_004161456.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides helcogenes P 36-108] gi|319416759|gb|ADV43870.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides helcogenes P 36-108] Length = 246 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ + + L + L ++LD + D N GAI R+ Sbjct: 63 MT--RKNHQGVIAFVSAVTYQKTEDLTPFLFEQGKNPLFVMLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I + S S +A K+++GAL +P R NL + LQ + + GF + + Sbjct: 121 AAVDAVIIPAKNSVSVNADAVKTSAGALHTLPVCREQNLKETLQFLKNSGFHIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE KG+ + M G I++LNVS AA V +Y Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGVLIYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRN 245 >gi|148984799|ref|ZP_01818052.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP3-BS71] gi|148990265|ref|ZP_01821476.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP6-BS73] gi|168486152|ref|ZP_02710660.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC1087-00] gi|225860774|ref|YP_002742283.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae Taiwan19F-14] gi|298230952|ref|ZP_06964633.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254976|ref|ZP_06978562.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502589|ref|YP_003724529.1| TrmH family tRNA/rRNA methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|147922821|gb|EDK73937.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP3-BS71] gi|147924404|gb|EDK75494.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP6-BS73] gi|183570789|gb|EDT91317.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC1087-00] gi|225727049|gb|ACO22900.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae Taiwan19F-14] gi|298238184|gb|ADI69315.1| TrmH family tRNA/rRNA methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|301800307|emb|CBW32933.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae OXC141] gi|327389642|gb|EGE87987.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA04375] gi|332073794|gb|EGI84272.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA41301] Length = 242 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ +I Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEIT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|56421244|ref|YP_148562.1| rRNA methylase [Geobacillus kaustophilus HTA426] gi|56381086|dbj|BAD76994.1| rRNA methylase [Geobacillus kaustophilus HTA426] Length = 251 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 56/277 (20%), Positives = 107/277 (38%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ ++ K + + L G H V A Sbjct: 1 MKRIESPKNARVKQWKKLLTK-------------------KGRDETGLFLLEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + + +L+ + W+ PV V + I E A Sbjct: 42 IKSNA-PLVELIVDERTAVPPGWNV---TGVPVTIVTEAVMRAISSTETPQGIAA--VCR 95 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 LS L+ V+ + L+ D V DP N+G ++R+A + D +I + + + + ++ Sbjct: 96 QLSTELEGVKTALLI---DAVQDPGNLGTMIRTADSAGIDAVILGEGCADLYNPKVVRAT 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+L H+P ++ + + G G + ++ ++ AL++G EG G+ Sbjct: 153 QGSLFHLPVVKGDLA-QWIARFKEQGIPVYGTALENAVDYRTVPQSSSFALLVGNEGSGV 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 RP T ++ + G ++LNV+ AA + LY Q Sbjct: 212 RPDLLRLTTENVYIPIYGRAESLNVAVAAGILLYSLQ 248 >gi|120600217|ref|YP_964791.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. W3-18-1] gi|146291855|ref|YP_001182279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella putrefaciens CN-32] gi|120560310|gb|ABM26237.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. W3-18-1] gi|145563545|gb|ABP74480.1| RNA methyltransferase, TrmH family, group 3 [Shewanella putrefaciens CN-32] Length = 246 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 110/244 (45%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102 + ++G+H V A L + +I +L + + D ++ + +D Sbjct: 2 KKQDIIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLADQAKAFGTTIQVASRKALD 61 Query: 103 KIVGKEAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ L A L++LD V DPHN+GA LR+A A Sbjct: 62 DKA-ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S +A ++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVQGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q +A+ +GAE KGLR ++E+ S+ + M G + +LNVS A V L+ Sbjct: 181 DCELYQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGVCLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|300361215|ref|ZP_07057392.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03] gi|300353834|gb|EFJ69705.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03] Length = 253 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 105/251 (41%), Gaps = 6/251 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K ++ QK ++ + + + G H V AL N ++ +L T AL +L Sbjct: 8 NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEEALKNHENYLY-ILGTSAALVKLTAHY 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 L ++ K + + L S + + + +VLD++ DP Sbjct: 66 KLKDDKVIQITDAIAEHLSSTKNSQDIFMVLPINQPKSFSFEYGKW----VVLDNLTDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A DG++ ++ + + +S G+ HI ++ L + Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIVQNPILAAISSFKENG 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + + K L I ++AL++G E G ETA ++ + G ++LN Sbjct: 182 IPVYVSILDKTAKSLNNCISVPQLALVIGNEAHGASKDVIETADKKIYIPIKGKAESLNA 241 Query: 266 SNAAAVALYIT 276 + AA + +Y Sbjct: 242 AVAAGIMIYHF 252 >gi|108761000|ref|YP_631271.1| RNA methyltransferase [Myxococcus xanthus DK 1622] gi|108464880|gb|ABF90065.1| RNA methyltransferase, TrmH family, group 3 [Myxococcus xanthus DK 1622] Length = 282 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 12/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIV 105 F+YGV+ V AAL ++ +L + L L V+ V + + + Sbjct: 36 FVYGVNPVLAALRARPDEVERLFLVEGQLGARAAGELLSRAREFGIRVEKVTRERLGTLA 95 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + VHQG+ +E L+ + L++VLD + DPHN+GAI+RSA A Sbjct: 96 -EGGVHQGVVVELRGFKYAELEDLLEAAKALGQPPLVVVLDGIQDPHNLGAIIRSADALG 154 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++ K + + +AK+++GA+EH R+ N++ AL+++ G D+K+ Sbjct: 155 AHGVVIAKDRAVQVTGTVAKASAGAVEHSRIARVVNISRALEELKEAGLWVAAADVDAKE 214 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+ + +AL++GAEG G+R + + M G + +LN S +A + LY Sbjct: 215 PMWSARLDGPLALVVGAEGAGVRDGVLKHCDFRLRIPMAGQVGSLNASVSAGILLYEVAR 274 Query: 279 HF 280 Sbjct: 275 QR 276 >gi|319943471|ref|ZP_08017753.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lautropia mirabilis ATCC 51599] gi|319743286|gb|EFV95691.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lautropia mirabilis ATCC 51599] Length = 247 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 105/242 (43%), Gaps = 12/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H V A L L + R V V +D++ G Sbjct: 2 LLYGFHAVMARLRQAPASFKSLYVDRHRDDNRVRDLLKLAQQQAVQVTRVEAGRLDRMAG 61 Query: 107 KEAVHQGLALETAPLLSP--------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 HQG+ + L+ L++LD V DP N+GA LRSA Sbjct: 62 -GKRHQGVVAQVETQTISTDLPTLLSDLEGRERPPFLLLLDGVTDPRNLGACLRSADGAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D +I K ++ + V +ASGA E +PYI ++NL ++++ GF+ GL+ ++ Sbjct: 121 VDAVIAPKDHAAPLTDVAMHTASGAGESVPYILVTNLVRTVEQLQDAGFRVYGLADEADA 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L + +A+++GAE KGLR +E ++ + M G + +LNVS A V LY Sbjct: 181 DLYRTDFAGPVAIVMGAEDKGLRRLVREQCDALVSIPMMGSVSSLNVSVATGVVLYEVLR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|152981297|ref|YP_001353804.1| RNA methyltransferase [Janthinobacterium sp. Marseille] gi|151281374|gb|ABR89784.1| RNA methyltransferase, TrmH family [Janthinobacterium sp. Marseille] Length = 247 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 7/238 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++G H V+A L + + + ++ + + A + + IVG Sbjct: 6 IFGFHAVTARLRHEASSVEEIYIDAGRHDQRMKDLIRAAEGAKVRIIPADDARLSSIVGT 65 Query: 108 EAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 +A A L LDA+ LL+VLD + DPHN+GA LR A +I Sbjct: 66 RRHQGVVAKAGELSLARNLDELLDAIEGPPLLLVLDGITDPHNLGACLRVADGAGAHAVI 125 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + +A AK ASGA + +PYI ++NL L+++ IG + DS+K L + Sbjct: 126 APKDRAVGLNATAAKVASGAADTVPYITVTNLARTLRELKERDIMLIGTTDDSEKGLYEA 185 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + AL++G+EG+G+R T+ET + + M G +++LNVS A+ V LY + Sbjct: 186 DFSGPAALVMGSEGEGMRRLTRETCDVLVGIPMFGSVESLNVSVASGVCLYEARRQRI 243 >gi|16330947|ref|NP_441675.1| rRNA methylase [Synechocystis sp. PCC 6803] gi|3915481|sp|P74261|Y1673_SYNY3 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase slr1673 gi|1653441|dbj|BAA18355.1| rRNA methylase [Synechocystis sp. PCC 6803] Length = 274 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 100/255 (39%), Gaps = 4/255 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARLDWD 84 + K+++ +Q ++ Q L L G H + AL A + D Sbjct: 15 QNPLVKQLRQLHQ-TKGRKQQGQLLLEGTHLLEVALAQGKGFNHGCFTAMWQEKNPVLAD 73 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + V + + K+ +A T + L++ + + DP Sbjct: 74 RLMAQSVHSYLVSGEVLAKMASTVNPDGVVATLTMDQFWRSPPPHARLGLVL--ERLQDP 131 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G ILR+A A +GI T S + +S++G+ +P ++ +L L+K H+ Sbjct: 132 GNLGTILRTAAATGVEGIWLTADCVDPTSPKVLRSSAGSSLLLPQQQLQSLPPLLEKFHT 191 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G Q I + + L + +I G+EG+GL E T + +++LN Sbjct: 192 QGLQLIATVPQATQTLWEIDFQRPTIVIFGSEGQGLSAPVLELTTHQVAIPQAPQVESLN 251 Query: 265 VSNAAAVALYITQNH 279 V+ A V LY + Sbjct: 252 VAIAVGVMLYEARRQ 266 >gi|237654034|ref|YP_002890348.1| RNA methyltransferase, TrmH family, group 3 [Thauera sp. MZ1T] gi|237625281|gb|ACR01971.1| RNA methyltransferase, TrmH family, group 3 [Thauera sp. MZ1T] Length = 251 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 117/238 (49%), Gaps = 7/238 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H VSA L + + ++ K+A R + +D +VG Sbjct: 12 LIYGFHAVSAKLRHAPDSVLEIFLTADRKDARVRKFLAQAESAGVRITQSEGDKLDALVG 71 Query: 107 KEAVH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + A L+ LD++ + L++VLD V DPHN+GA LR A A + Sbjct: 72 TRRHQGVVAKVDATRREIKLADVLDSLDENALILVLDGVQDPHNLGACLRVADAAGAHAV 131 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + K + +A K ASGA + +PYI ++NL AL++M G +G + +++K L Sbjct: 132 VAPKDRAVGLNATAVKVASGAADTVPYITVTNLARALREMQDAGVWVVGAAGEAEKTLYG 191 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A +LGAEG GLR T+ET +A + M G +++LNVS A+ + L+ + Sbjct: 192 VDQKVPVAWVLGAEGDGLRRLTRETCDELARIPMHGSVESLNVSVASGICLFEARRQR 249 >gi|197301392|ref|ZP_03166473.1| hypothetical protein RUMLAC_00123 [Ruminococcus lactaris ATCC 29176] gi|197299549|gb|EDY34068.1| hypothetical protein RUMLAC_00123 [Ruminococcus lactaris ATCC 29176] Length = 270 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 63/271 (23%), Positives = 115/271 (42%), Gaps = 15/271 (5%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNA 77 + R + Y + + L + G + V A + K+F L ++ Sbjct: 2 KEQRMRENSRYHE----AENHTGQDNSHTLVIEGRNAVLEAFRSGKPIDKVFVLDGCQDG 57 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------R 130 R H + V + + +I + HQG+ A T+D + Sbjct: 58 PVRTIVREAKKHDALLNFVTKERLSQIS-ETGKHQGVVAYAAAYEYSTVDDMLALAEERG 116 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 +++LD++ DPHN+GAI+R+A G+I KR + +A +AK+++GAL + P Sbjct: 117 EDPFILILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVA 176 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 +++NL ++++ G + +P+ I L++G EG+G+ +E Sbjct: 177 KVTNLVKTMEELKEKGLWFVCA-DMDGEPMYHLNLTGPIGLVIGNEGEGVSRLVKENCDF 235 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +A + M G I +LN S AA V Y Sbjct: 236 VAGIPMKGQINSLNASVAAGVLAYEIVRQRI 266 >gi|193216018|ref|YP_001997217.1| RNA methyltransferase, TrmH family, group 3 [Chloroherpeton thalassium ATCC 35110] gi|193089495|gb|ACF14770.1| RNA methyltransferase, TrmH family, group 3 [Chloroherpeton thalassium ATCC 35110] Length = 243 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 115/239 (48%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG + V + ++ ++ N + H + + ++ G Sbjct: 4 VVYGRNAVLELIRTRPEEVEKIYFQFNTEQSKLKEILVTAKRHNISIGKARNNRLVELSG 63 Query: 107 KEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + LD + QL+++LD + DPHN+GAI+R+A A + D Sbjct: 64 TDK-HQGVCALVGKVKYFELDEILARPRNSKQLIVILDGLEDPHNVGAIIRTAEAAAVDA 122 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +A +AK+++GAL HI ++ NL+ ++++ GF GL D +K Sbjct: 123 VIIPHDSGCPINATVAKTSAGALSHIRLCKVVNLSQTIERLKKHGFWVYGLDMDGEKNYY 182 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + ND A+++G+EGKG+R ++ ++ L + G +++LN S +AA+ LY Sbjct: 183 EIDFNDHCAIVVGSEGKGIRQLVRKNCDALIRLPIAGNVESLNASVSAAIPLYEAMRQR 241 >gi|167629448|ref|YP_001679947.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum Ice1] gi|167592188|gb|ABZ83936.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum Ice1] Length = 256 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 116/241 (48%), Gaps = 14/241 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L G V AL + R I +L+ K A R P+ + +D+ V Sbjct: 12 LLAGRQPVMEALKSG-RAINKLVVAKGAREGSIREILGMARDRGIPITELERTVLDREVR 70 Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ AP+ ++ + +++LD + DPHNIGA+LR+A Sbjct: 71 H---HQGIIAHVAPVAYVEVEEILEKAKAKGEPPFVLLLDGLEDPHNIGALLRTAEGAGA 127 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I KR + ++ +AK+++GA+E++P R++NL + ++ G IG + D+ +P Sbjct: 128 HGVIIPKRRGGAITSTVAKASAGAVEYVPIARVTNLVQTVGQLKKAGLWIIGSAMDAPRP 187 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ + LI+G+EGKG+ P +E + + M G + +LN S A A+ +Y Sbjct: 188 YFRQDFRGPVGLIVGSEGKGISPLLREHCDHLVSIPMGGKVDSLNASVAGALLMYERVRQ 247 Query: 280 F 280 Sbjct: 248 L 248 >gi|163867316|ref|YP_001608510.1| TrmH family tRNA methyltransferase [Bartonella tribocorum CIP 105476] gi|161016957|emb|CAK00515.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella tribocorum CIP 105476] Length = 284 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 102/275 (37%), Gaps = 11/275 (4%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 K+ ++ + ++ K +++ +QK ++ ++ G+ V ALN Sbjct: 4 PKTGRVKEITSL-------SNPIIKDLKALSQK-KNRNREGLFMAEGLKLVIDALNLGWT 55 Query: 67 KIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 + + + + + V + ++ + ++ + + S Sbjct: 56 IQTLIFSKSEIGNATIENTAARAVANGGFVIKASQKVMESLTRRDNPQTVIGIFKQKWQS 115 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + + + + LD V DP N+G I+R+A A S G+I + S ++ G+ Sbjct: 116 LEMITGQAKDVYIALDRVRDPGNLGTIIRTADAVSAKGVILIGETTDPFSPETVRATMGS 175 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + IP R G S + ++KN I L++G E +GL Sbjct: 176 IFSIPLYRFDESAFLNWSSCFKGMIVGTHLKGSLDYRKLDLKNGPIILLMGNEKQGLSDI 235 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +A + G +LN++ A AV LY + Sbjct: 236 LTNRCDKLARIPQSGRADSLNLAIATAVMLYEIRR 270 >gi|157150299|ref|YP_001449674.1| RNA methyltransferase [Streptococcus gordonii str. Challis substr. CH1] gi|157075093|gb|ABV09776.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus gordonii str. Challis substr. CH1] Length = 243 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VSGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ LI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNT-GGKLVLIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|153939007|ref|YP_001392409.1| RNA methyltransferase [Clostridium botulinum F str. Langeland] gi|152934903|gb|ABS40401.1| RNA methyltransferase, TrmH family [Clostridium botulinum F str. Langeland] gi|295320398|gb|ADG00776.1| RNA methyltransferase, TrmH family [Clostridium botulinum F str. 230613] Length = 259 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 54/262 (20%), Positives = 107/262 (40%), Gaps = 9/262 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ K+++ +K ++ +Q ++ + G AL + S + ++ + +L +L+ Sbjct: 4 SKDNQLIKEVRKLREK-KYRTQNKSFIIEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61 Query: 84 ---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 N+ + V + I G QG+ LD +L+ D Sbjct: 62 LYKKYNINNDIETYVVNYSVLKSI-GNTENPQGIVSVINYFKKEKLDLQNGFYILV--DK 118 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A G+ITTK + +S G++ +IP I NL Sbjct: 119 VQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENLEVVKS 178 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + + +KN I + +G EG G+ + + MPG Sbjct: 179 LQKKGFKLLVSSLDTNSNFYDVNMKN-NIIIAVGNEGNGISEVLNTLSDIKVKIPMPGAA 237 Query: 261 KALNVSNAAAVALYITQNHFAK 282 ++LNV+ A ++ + + Sbjct: 238 ESLNVAVACSIMTFERIRQINE 259 >gi|296877290|ref|ZP_06901330.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912] gi|296431810|gb|EFH17617.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912] Length = 242 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YGVH V+ AL K++ + + P +T+ ++ Sbjct: 2 ENNDIVYGVHAVTEALQANTGNKLYIQEDLRGKNVDKIKALAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG L A L + LL++LD + DPHN+G+ILR+A A + Sbjct: 62 T-EGAVHQGFVLRVAAFAYTDLAVILKQTVQEENPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V++K+++GA+EHIP R++NL+ L K+ GF G + Sbjct: 121 VSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKEEGFWIFGTDMNGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHQWNTA-GKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|269961411|ref|ZP_06175775.1| RNA methyltransferase [Vibrio harveyi 1DA3] gi|269833788|gb|EEZ87883.1| RNA methyltransferase [Vibrio harveyi 1DA3] Length = 247 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 112/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A HQG+ + S LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-HGANHQGIIARVKAAKQLNENDIDGILAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S +A ++K A GA E +P IR++NL ++ + G +G + ++ Sbjct: 122 VAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HFA 281 Sbjct: 242 QRI 244 >gi|312898322|ref|ZP_07757712.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera micronuciformis F0359] gi|310620241|gb|EFQ03811.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera micronuciformis F0359] Length = 247 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 109/242 (45%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPFPVKTVPPQTIDKIVGK 107 + G ++V+ AL + K L PV+ V + ++++ Sbjct: 5 IIAGRNSVTEALKAGRSVTKIYMTAKKEAPPLARIRTLAKERKIPVEFVDNRAMERLAPG 64 Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQ + A + LD L++ D + D HN+GAI+R+A Sbjct: 65 IR-HQDVVALAAAVDFADLDDVLAKVREQGEMPFLVLADGIEDVHNLGAIIRTAECAGVH 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 I+ +R+S + +AK+++GA+E++P +RI N+T L+++ GF +G ++ Sbjct: 124 AILVPQRHSAPINETVAKTSAGAVEYMPVVRIGNVTTTLKQLKKQGFWVLGADMVGEENY 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + L++G+EGKG+ ++ + + M G I +LN S AAA+ +Y Sbjct: 184 YSLSADMPLVLVIGSEGKGISRLVKDNCDVLVRIPMFGRINSLNASVAAALLMYEVARKR 243 Query: 281 AK 282 + Sbjct: 244 HR 245 >gi|307702003|ref|ZP_07639011.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus mitis NCTC 12261] gi|307616648|gb|EFN95837.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus mitis NCTC 12261] Length = 242 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDQILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKGEGFWTFGTDMNGTPCH 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 183 KWNTK-GKIALIIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|240948309|ref|ZP_04752695.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor NM305] gi|240297348|gb|EER47889.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor NM305] Length = 246 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 104/238 (43%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A L+N ++ ++ K RL N ++ V QT+D Sbjct: 5 IYGIHAVKAFLDNAPERLIEVFVLKGREDKRLIPLLNELQRLGIAIQQVNRQTLDNKSQG 64 Query: 108 EAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E +A D + LL++LD V DPHN+GA LR+A A D + Sbjct: 65 EVHQGIIAKVVPQKELNEHDLDRILASKPQPLLLILDGVTDPHNLGACLRTADAAGVDAV 124 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLE 221 I K S ++ K A GA E +P IR++N + +G + ++ + Sbjct: 125 IVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNVWIVGTAGEATSSIY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 IAL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 185 DAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIIRQ 242 >gi|197119261|ref|YP_002139688.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter bemidjiensis Bem] gi|197088621|gb|ACH39892.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter bemidjiensis Bem] Length = 248 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 118/244 (48%), Gaps = 11/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 + +YG++ V AL SR+I +L + + PV+ ++ Sbjct: 2 SKEEIIYGLNPVMEALR-GSREIHELFVAGTSADKRLEKLLKLAAERKIPVRQREKGDLN 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 ++ G E HQG+AL+ P LD L++VLD V DPHN+GA++RSA Sbjct: 61 RLCGTE-HHQGVALKVEPFPYADLDDVLEGLQGTRDGLILVLDSVQDPHNLGALIRSAAC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + ++ K + +AV KS++GA E I +++N++ AL+ + GF G + Sbjct: 120 AGANAVVIPKDRAAGVTAVAEKSSAGATETISVAQVTNISQALESLKKAGFWIYGADGSA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + L Q+ +AL++G EG+G+RP ++ ++ + + G + +LN S A + L+ Sbjct: 180 RHTLYQQDFTGPVALVIGGEGEGIRPLVRKGCDAVVSIPLQGGVNSLNASVAGGIFLFEV 239 Query: 277 QNHF 280 Sbjct: 240 VRQR 243 >gi|225010506|ref|ZP_03700977.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium MS024-3C] gi|225005335|gb|EEG43286.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium MS024-3C] Length = 246 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 113/245 (46%), Gaps = 9/245 (3%) Query: 46 PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + ++YG+ V A+ K+F + L + + VP + +D+ Sbjct: 2 EKQTYIYGIRAVIEAIEAKETLDKVFIQKGLQGDLIKTLENLIRKQGLNTSYVPVEKLDR 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ +P+ LD + + L ++LD ++D N GAI+R+A Sbjct: 62 LAKQHNNHQGVVASISPIEFHELDPFVESVLETKEAPLFLLLDQLSDVRNFGAIIRTASC 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DGII K+ + +A K+++GA +P I++ +L DA+ + + G Q I + + Sbjct: 122 TGVDGIIIQKKGTAPVTADTIKTSAGAAFQVPIIKVDHLKDAVFHLQACGIQVIAATEKA 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K L + A+++G+E G+ P + A + A L M G I +LNVS A V LY Sbjct: 182 KNDLYEVSFTGPTAIVMGSEDMGITPSILKVANAQAKLPMQGPISSLNVSVACGVFLYEA 241 Query: 277 QNHFA 281 Sbjct: 242 VRQRK 246 >gi|160891918|ref|ZP_02072921.1| hypothetical protein BACUNI_04376 [Bacteroides uniformis ATCC 8492] gi|270296416|ref|ZP_06202616.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D20] gi|317480388|ref|ZP_07939488.1| RNA methyltransferase [Bacteroides sp. 4_1_36] gi|156858396|gb|EDO51827.1| hypothetical protein BACUNI_04376 [Bacteroides uniformis ATCC 8492] gi|270273820|gb|EFA19682.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D20] gi|316903466|gb|EFV25320.1| RNA methyltransferase [Bacteroides sp. 4_1_36] Length = 246 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHP--FPVKTVPPQTIDK 103 + ++GV V A+ I ++L K+ + L + + PV+ VP + I++ Sbjct: 4 NSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAVLKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ + + L + L ++LD + D N GAI R+ Sbjct: 63 VT--RKNHQGVIAFISSVTYQKTEDLVPFLFEQGKNPLFVMLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I R S S +A K+++GAL +P R +L + LQ + + GF + + Sbjct: 121 AAVDAVIIPARNSVSVNADAMKTSAGALHTLPVCREHSLKETLQFLKNSGFHIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE KG+ + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRT 245 >gi|187730319|ref|YP_001882871.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella boydii CDC 3083-94] gi|187427311|gb|ACD06585.1| RNA methyltransferase, TrmH family, group 3 [Shigella boydii CDC 3083-94] Length = 243 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALQERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + L++LD V DPHN+GA LRSA A Sbjct: 62 SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 FA 281 + Sbjct: 242 RS 243 >gi|241662769|ref|YP_002981129.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D] gi|240864796|gb|ACS62457.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia pickettii 12D] Length = 250 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 7/239 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 L G H V+A L + ++ I ++ N R D A + + I G Sbjct: 6 LLIGFHAVTARLRHGAKSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADADRLRGIAG 65 Query: 107 KEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A + L LD + + LL+VLD V DPHN+GA LR A A + Sbjct: 66 TDRHQGVVAKAESLSLALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADAAGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Q Sbjct: 126 IAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQERGVWVIGTADEAEQDLYQ 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 IA+++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ A Sbjct: 186 ADFKGPIAIVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244 >gi|323350497|ref|ZP_08086159.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis VMC66] gi|322123179|gb|EFX94864.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis VMC66] Length = 242 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL K++ + + + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKNLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGIIIPKHRAVGVTPVVAKTSTGAIEHIPISRVTNLSQTLDKLKEAGFWIFGTDMQGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|322390887|ref|ZP_08064395.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus parasanguinis ATCC 903] gi|321142400|gb|EFX37870.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus parasanguinis ATCC 903] Length = 242 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YGVH V+ AL K++ + + P +T+ ++ Sbjct: 2 ENNDIVYGVHAVTEALQANTGNKLYIQEDLRGKNVDKIKALAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG L A L A + LL++LD + DPHN+G+ILR+A A + Sbjct: 62 T-EGAVHQGFVLRVAAFAYTDLAAILKQTAQEENPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V++K+++GA+EHIP R++NL+ L K+ GF G + Sbjct: 121 VSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKEEGFWIFGTDMNGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHQWNTA-GKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|324996031|gb|EGC27942.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK678] Length = 242 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TA-GAVHQGFVLRVAEFAYTDFEVLFKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|298484907|ref|ZP_07003006.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160594|gb|EFI01616.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 253 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 114/239 (47%), Gaps = 8/239 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ + + R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P LD S LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL AL+K+ G +G + +++ L Q Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARALEKLQQRGLWVVGTAGEAEVELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ + Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 245 >gi|90020702|ref|YP_526529.1| tyrosyl-tRNA synthetase, class Ib [Saccharophagus degradans 2-40] gi|89950302|gb|ABD80317.1| RNA methyltransferase TrmH, group 3 [Saccharophagus degradans 2-40] Length = 248 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 9/243 (3%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + ++G+H V + L ++I ++ ++A + A V +++D Sbjct: 3 KQEIIFGLHAVQSLLKASPQRIQEIWIVRGRQDARVQKVLSAAQAAGIKVLPQDKKSMDS 62 Query: 104 IVGKEAVHQGLAL------ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + LA T L P ++A+ L++VLD V DPHN+GA LRSA A Sbjct: 63 VSADGNHQGVLAYAKEGQSYTENDLYPLIEAIEGDPLIVVLDGVTDPHNLGACLRSADAA 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K S + V K A GA +++P I ++NL L+KM G G + D+ Sbjct: 123 GAHALIVPKDNSVGLTEVARKVACGAADNVPLIVVTNLARCLKKMQEQGLWVAGTTGDTD 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K + +++GAEG G+R T ET + + M G + +LNVS A V L+ Sbjct: 183 KSIYDVDLTGPRVIVMGAEGTGMRRLTTETCDDLVKIPMLGSVTSLNVSVATGVVLFEVV 242 Query: 278 NHF 280 Sbjct: 243 RQR 245 >gi|327439282|dbj|BAK15647.1| rRNA methylase [Solibacillus silvestris StLB046] Length = 253 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 105/278 (37%), Gaps = 25/278 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + K + + + + + G H V A Sbjct: 1 MKRIESTQ------------------NALVKHWKKLVTQRKEREKTGEYIVEGFHLVEEA 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +I Q++ L W + V + I E + Sbjct: 43 LKH-KDQIVQIIVRDGVDLPLLWAIDEVVLVHVNEAVSKEIA-----ETENSQGVFAHCK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + D + + ++++D V DP NIG ++R+A A D ++ K + + +SA Sbjct: 97 QRQISEDEQFDWKKVLLVDAVQDPGNIGTMIRTADAAGIDAVVLGKGSVDAFNPKSLRSA 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP +R + + ++ + + G + G S D ++ +D ALI+G EG G+ Sbjct: 157 QGSHFHIPVVRGDLM-EWVENLQADGIRVFGTSLDESISYKKVEPSDSFALIVGNEGSGI 215 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+ + + G ++LNV+ A + LY Sbjct: 216 NPQILAKTDQNIIIPILGGAESLNVAVATGILLYAFVK 253 >gi|311105148|ref|YP_003978001.1| methyltransferase [Achromobacter xylosoxidans A8] gi|310759837|gb|ADP15286.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Achromobacter xylosoxidans A8] Length = 245 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 7/238 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L G H V A L + I ++ ++ + + + VP + +D + Sbjct: 6 VLAGFHAVVARLRHAPDSIKEIYVEASRRDKRMQTFIEQAEKAGCRLHPVPMERLDGLSR 65 Query: 107 KEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +AL L+ LD + LL++LD V DPHN+GA LR+A A + Sbjct: 66 GTRHQGVVALAEERQLAVDVDEVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + + +A + + A GA + +PY+ ++NL ++ + G +G + + Q Sbjct: 126 IAPRDRAVGLNATVQRVACGAADTVPYLMVTNLARTMRSLKDRGVWLVGTDDQATDSMHQ 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A ++GAEG+G+R T+ET + ++ M G +++LNVS A+AV LY T Sbjct: 186 IDARQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYETVRQR 243 >gi|324989712|gb|EGC21655.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK353] Length = 242 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL K++ + + + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKNLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPISRVTNLSQTLDKLKEAGFWIFGTDMQGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|315301171|ref|ZP_07872437.1| RNA methyltransferase, TrmH family, group 3 [Listeria ivanovii FSL F6-596] gi|313630458|gb|EFR98325.1| RNA methyltransferase, TrmH family, group 3 [Listeria ivanovii FSL F6-596] Length = 251 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 62/248 (25%), Positives = 117/248 (47%), Gaps = 13/248 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99 + E ++ G + V L + R I ++ + + + V+ VP Q Sbjct: 2 EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGVQKGVLKQVLASAKDRKIQVQFVPKQ 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152 I+K+V HQG+A + A LD ++LD + DPHN+G+I+R Sbjct: 61 KIEKVV--NGAHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A + GII KR + + +AK+++GA+E++P +R++N+ ++++ G G Sbjct: 119 TADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 ++ + +A+++G+EG G+ +E + HL M G + +LN S AA++ Sbjct: 179 DANGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLIHLPMRGKVTSLNASVAASIL 238 Query: 273 LYITQNHF 280 LY Sbjct: 239 LYEVYRKR 246 >gi|254784758|ref|YP_003072186.1| 23S rRNA-methyltransferase RlmB [Teredinibacter turnerae T7901] gi|237686894|gb|ACR14158.1| 23S rRNA-methyltransferase RlmB [Teredinibacter turnerae T7901] Length = 247 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 106/245 (43%), Gaps = 11/245 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 + ++G+H V + L ++I +L K+ + H V V Q ++ Sbjct: 2 KTDVIFGIHAVQSLLKTAPQRISELQVVKDRQDQRIKKLLAMAEAHGVRVSLVNRQQLES 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 G + HQG+ P + + L++VLD V DPHN+GA +RSA A Sbjct: 62 AAG-DGNHQGVIAYAKPGKALDEKGLLDLIAQMEEDPLILVLDGVTDPHNLGACMRSADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 ++ K S + K A GA E +P + ++NL AL K+ G G + ++ Sbjct: 121 AGVHAVVIPKDNSAGLNETARKVACGAAETVPLVVVTNLARALNKLQDAGLWVAGAAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +++GAEG G+R T+ET + + M G + +LNVS A V L+ Sbjct: 181 DADIYSADLTGPRVIVMGAEGDGMRRLTKETCDLLIKIPMMGSVSSLNVSVATGVVLFEV 240 Query: 277 QNHFA 281 Sbjct: 241 LRQRN 245 >gi|268592873|ref|ZP_06127094.1| RNA methyltransferase, TrmH family, group 3 [Providencia rettgeri DSM 1131] gi|291311662|gb|EFE52115.1| RNA methyltransferase, TrmH family, group 3 [Providencia rettgeri DSM 1131] Length = 249 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 112/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L ++I ++ K R V+ Q +D Sbjct: 2 SEMIYGIHAVKALLERSPQRIKEVYILKGREDRRLMPLVHEIEALGVVVQVANRQWMDSQ 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+ + P L +S L+VLD V DPHN+GA LRSA A Sbjct: 62 T-EGAVHQGIIAKVLPGKQYQEGDLPDLLENTSSPFLLVLDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K A GA E++P IR++NL L+ + + +G + ++ Sbjct: 121 VHAVIVPKDKSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEYNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q IAL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 NLYQSKLTGSIALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|150396189|ref|YP_001326656.1| RNA methyltransferase [Sinorhizobium medicae WSM419] gi|150027704|gb|ABR59821.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium medicae WSM419] Length = 291 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 142/268 (52%), Positives = 187/268 (69%), Gaps = 13/268 (4%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------------PENLFLYGVHTVSA 59 S +D+HYA LRR HRD ++ + R + P+ + LYG+HTV A Sbjct: 9 KSARDTHYANLRRAHRDGRRERGEIPTPRQDKRGKPSADWKPPALAPDQVLLYGLHTVRA 68 Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 AL+NP R+I +L T+NA ARLD + PFPV+TV PQ +D+I+G +A+HQG+ LET Sbjct: 69 ALDNPERRIIRLSVTQNAAARLDLGDSAALPFPVETVTPQELDRILGPDAIHQGVMLETR 128 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PL L+A+R+ L++VLD V DPHN+GAI+RSAVAF +ITT R+SP+ES VLAKS Sbjct: 129 PLPHRKLEALRDCPLILVLDQVTDPHNVGAIMRSAVAFDAGALITTMRHSPTESGVLAKS 188 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ASGALE IPYI+ISNL D + ++H+ GF TIGL S+ +PLE DKIAL+LG+EGKG Sbjct: 189 ASGALELIPYIQISNLADTIDELHALGFMTIGLDSEGPQPLEGTFAGDKIALVLGSEGKG 248 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSN 267 LR KT++T ++A L MPG IK+LNVSN Sbjct: 249 LRQKTRQTVKALARLDMPGAIKSLNVSN 276 >gi|70727476|ref|YP_254392.1| hypothetical protein SH2477 [Staphylococcus haemolyticus JCSC1435] gi|90110723|sp|Q4L3J1|TRMHL_STAHJ RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|68448202|dbj|BAE05786.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 249 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 120/244 (49%), Gaps = 13/244 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 E++ + G H V A+ + I ++ + + D V+TVP +D Sbjct: 2 EDIVIVGRHAVKEAIVSGHT-INKIWIQEGIRKQQINDILQNAKEQKLIVQTVPKSKLDN 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156 + A HQG+A AP D SQ +++LD + DPHN+G+ILR+A A Sbjct: 61 LA--NAPHQGVAALIAPYEYADFDQFIQSQKDKEGLSTVVILDGLEDPHNLGSILRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DG+I KR S + + +AK+++GA++H+P +R++NL + ++ G+ G +D+ Sbjct: 119 SGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVMRVTNLAKTIDELKEHGYWVAGAEADN 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +A+++G+EG+G+ ++ + M G + +LN S AA++ +Y Sbjct: 179 ATDYRDMAADMPLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNASVAASLMMYEV 238 Query: 277 QNHF 280 Sbjct: 239 YRKR 242 >gi|89098882|ref|ZP_01171762.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911] gi|89086286|gb|EAR65407.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911] Length = 249 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 57/278 (20%), Positives = 103/278 (37%), Gaps = 29/278 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I N+ K+ + K + + G H A Sbjct: 1 MKHIQSA------------------NNPQIKQWRKLLAK-KERDKTGMFLAEGYHLAEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L K +L+ ++NA + WD PV V + I + E +A+ Sbjct: 42 LK--GEKAIELIISENAELPVRWDY---GELPVTMVTDEIIKSLSDTETPQGVIAVCKEE 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 ++ +++D V DP N+G ++R+A A D +I K + + + +SA Sbjct: 97 KTPASVK----GSTFLLIDAVQDPGNLGTMIRTADAAGIDAVIVGKGSADIYNPKVLRSA 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P IR S + + + + AL++G EG G+ Sbjct: 153 QGSHFHLPIIRGSLNEWMDRLEEEEIPVYGTALENGSPYK-ETHPAGRFALLVGNEGSGV 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+ ++ + G ++LNV+ AA + LY +N Sbjct: 212 SPELLARTDKNLYIPIYGKSESLNVAVAAGILLYYLKN 249 >gi|315125636|ref|YP_004067639.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas sp. SM9913] gi|315014149|gb|ADT67487.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas sp. SM9913] Length = 247 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 109/243 (44%), Gaps = 8/243 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 N ++G H+V A L + ++ A K + + V+ + + +D Sbjct: 3 NELIFGFHSVEAILAKEPERFIEIYALKGRDDKRLSPVIEQARQFGISVQFMQRKALDNK 62 Query: 105 VGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 E +A A + D ++ L+VLD + DPHN+GA LRSA A Sbjct: 63 AKDEQHQGIIANVKAARVFNEKDLDEIIEREDTPFLLVLDGITDPHNLGACLRSADAAGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S + K A GA E +P I+++NL L+++ G +G + ++ Sbjct: 123 HAVIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGETDTH 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +A+++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 183 VFDASLTGPMAIVMGAEGEGMRRLTREHCDVLVKIPMAGTVSSLNVSVATGICLFEVLRQ 242 Query: 280 FAK 282 A+ Sbjct: 243 RAE 245 >gi|289433595|ref|YP_003463467.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169839|emb|CBH26377.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 251 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 116/248 (46%), Gaps = 13/248 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQ 99 + E ++ G + V L + R I ++ + + V+ VP Q Sbjct: 2 EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGTQKGVLKQVLTLAKERKVQVQFVPKQ 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152 I+K+V VHQG+A + A LD ++LD + DPHN+G+I+R Sbjct: 61 KIEKVVS--GVHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A + GII KR S + +AK+++GA+E++P +R++N+ ++++ G G Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +A+++G+EG G+ +E + HL M G + +LN S AA++ Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLIHLPMRGKVTSLNASVAASLL 238 Query: 273 LYITQNHF 280 LY Sbjct: 239 LYEVYRKR 246 >gi|71908582|ref|YP_286169.1| RNA methyltransferase TrmH, group 3 [Dechloromonas aromatica RCB] gi|71848203|gb|AAZ47699.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Dechloromonas aromatica RCB] Length = 243 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 110/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H ++A L + + ++L +A AR V + +D + Sbjct: 5 LIYGFHAITAKLRHDPGAVKEILIDASRHDARARDLLGHAELQGINVVACDGKRLDGMA- 63 Query: 107 KEAVHQGLALETAP-----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ L LD + L+VLD + DP N+GA LR A A Sbjct: 64 PGARHQGVVARIEGGRKVAHLDDVLDTLEEPAFLLVLDGITDPRNLGACLRVADAAGVHA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + + V AK+A GA E +PY+ ++NL L+++ IG + +++ L Sbjct: 124 VIAPKDRAVGLTDVAAKTACGAAETVPYVMVTNLARTLRELQEREIWVIGTAGEAESDLY 183 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A +LGAEG+G+R T+E + + M G +++LNVS AA V L+ + Sbjct: 184 AAEWPKATAWVLGAEGEGMRRLTRENCDQLVKIPMHGTVESLNVSVAAGVCLFEARRRL 242 >gi|327462795|gb|EGF09117.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK1057] Length = 242 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 E VHQG L A + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TDGE-VHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|254481117|ref|ZP_05094363.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2148] gi|214038912|gb|EEB79573.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2148] Length = 251 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 107/248 (43%), Gaps = 17/248 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 ++YG+H V + L + + +L + + + P+ + +D +V Sbjct: 3 YIYGIHAVDSLLRQNPKSVQRLWVQQGREDKRIASLLELAQNQGVPMARESRKDLDDMVK 62 Query: 107 KEA----------VHQGLALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILR 152 G + L D + L++VLD V DPHN+GA LR Sbjct: 63 GRHQGVVAETLSDPVHGDTQQANLWQESDLLRMVDEKDSPVLILVLDGVTDPHNLGACLR 122 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D ++ K S S + K A GA E +P++R++N++ L + G Sbjct: 123 SADAAGVDAVVVPKDKSADLSPTVRKVACGAGEIVPFVRVTNISRTLDALKERQVWIFGA 182 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + +++K + +AL++GAEG GLR T+E + L M G + +LNVS A V Sbjct: 183 AGEAEKSIYDNDLTGSMALVMGAEGAGLRRLTREHCDFLIKLPMAGSVSSLNVSVATGVC 242 Query: 273 LYITQNHF 280 L+ Sbjct: 243 LFEVIRQR 250 >gi|322807442|emb|CBZ05016.1| RNA methyltransferase, TrmH family [Clostridium botulinum H04402 065] Length = 259 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 54/262 (20%), Positives = 107/262 (40%), Gaps = 9/262 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ K+++ +K ++ +Q ++ + G AL + S + ++ + +L +L+ Sbjct: 4 SKDNQLIKEVRKLREK-KYRTQNKSFIVEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61 Query: 84 ---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 N+ + V + I G QG+ LD +L+ D Sbjct: 62 LYKKYNINNDIETYVVNYSVLKSI-GNTENPQGIVSVINYFKKEKLDLQNGFYILV--DK 118 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A G+ITTK + +S G++ +IP I NL Sbjct: 119 VQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENLEVVKS 178 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + + +KN I + +G EG G+ + + MPG Sbjct: 179 LQKKGFKLLVSSLDTNSNFYDVNMKN-NIIIAVGNEGNGISEVLNTLSDIKVKIPMPGAA 237 Query: 261 KALNVSNAAAVALYITQNHFAK 282 ++LNV+ A ++ + + Sbjct: 238 ESLNVAVACSIMTFERIRQINE 259 >gi|241662958|ref|YP_002981318.1| tRNA/rRNA methyltransferase SpoU [Ralstonia pickettii 12D] gi|240864985|gb|ACS62646.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia pickettii 12D] Length = 260 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 98/257 (38%), Gaps = 5/257 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ +K +++ + ++H + L GVH V A L+ L+ R Sbjct: 6 SRDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVVAYLDAGHMPAQCLV--SERHIRHPE 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 A + TV + V G+ L ++LD + D Sbjct: 64 VAAVLDRVDPDTVILLADNLFGQLTTVVNGVDLMALVETPEGKLPQTIDADCVILDGIQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G+ILR A A + T + + SA ++A GA H+ + ++ Sbjct: 124 AGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAAMGAHFHLNIVEHCTFESVHSRLQ 183 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + SS +K+ + N + + G EG G+ + T+ + PG +++L Sbjct: 184 VPL---LATSSHAKQAVFDVPLNAPVGWVFGNEGAGVSEEWLSAVTTPVTIPQPGGMESL 240 Query: 264 NVSNAAAVALYITQNHF 280 NV+ AAAV L+ Sbjct: 241 NVAAAAAVCLFEAVRQR 257 >gi|302878948|ref|YP_003847512.1| tRNA/rRNA methyltransferase (SpoU) [Gallionella capsiferriformans ES-2] gi|302581737|gb|ADL55748.1| tRNA/rRNA methyltransferase (SpoU) [Gallionella capsiferriformans ES-2] Length = 258 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 99/258 (38%), Gaps = 9/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ YK++ +R+ ++ L G H + A L+ LL Sbjct: 6 SRDNPFYKELVKLTASTRNRNKAGQTLLDGAHLLKAYLDAGYTPRHILLNAAALQDAEIT 65 Query: 84 DAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 PV + + ++ + G+ + + ++ ++L+ V Sbjct: 66 SLRQRITGAPVTQLDDKLFAELS-ELKTPTGILALIDLPPAKIV----TARFALLLEAVQ 120 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G++LRSA A CD + + + + K A+ + I D + Sbjct: 121 DPGNLGSMLRSAAAAGCDAVFLSPACADAW---SPKVLRAAMGGHFCLAIYEQQDLFKVA 177 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + + + + + L IA ++G EG GL P+ + AT + MPG +++ Sbjct: 178 QGYSGKLLATTLQATDSLFDCDLTGNIAFMVGNEGAGLTPELRALATHPVTIPMPGAVES 237 Query: 263 LNVSNAAAVALYITQNHF 280 LN + A A+ L+ Sbjct: 238 LNAAAATAICLFEAVRQR 255 >gi|210608927|ref|ZP_03288064.1| hypothetical protein CLONEX_00244 [Clostridium nexile DSM 1787] gi|210152844|gb|EEA83850.1| hypothetical protein CLONEX_00244 [Clostridium nexile DSM 1787] Length = 250 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 111/245 (45%), Gaps = 11/245 (4%) Query: 45 QPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + ENL + G + V A + K+F L ++ R H + V + +D Sbjct: 6 KVENLMVEGRNAVIEAFRSGKPVDKLFVLDGCQDGPVRTIIREAKKHDTIINFVTKERLD 65 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 +I + HQG+ A ++ + L++LD++ DPHN+GAI+R+A Sbjct: 66 QIS-ETKKHQGVIAYAAAYEYSEVEDMLELAKKKGEDPFLILLDNIEDPHNLGAIIRTAN 124 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 G+I KR + +A +AK+++GAL + P +++NL ++++ G + Sbjct: 125 LAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKEKGLWFVCA-DM 183 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + + I +++G EG G+ +E +A + M G I +LN S AA V Y Sbjct: 184 GGESMYRLNLTGPIGMVIGNEGDGVSRLVKEKCDFIASIPMKGDIDSLNASVAAGVLAYE 243 Query: 276 TQNHF 280 Sbjct: 244 IVRQR 248 >gi|138896271|ref|YP_001126724.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196250227|ref|ZP_03148921.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16] gi|134267784|gb|ABO67979.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196210411|gb|EDY05176.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16] Length = 251 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 101/277 (36%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ ++ K + + L G H V A Sbjct: 1 MKRIESPKNARVKHWKKLLTK-------------------KGREETGCFLLEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + + +L+ + WD + PV V + I E A+ Sbjct: 42 VKSQA-PLVELIVDERTTIPPGWDVS---DVPVVIVTETVMKAISSTETPQGIAAICRQR 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T + +++D V DP N+G ++R+A A D +I + + + + ++ Sbjct: 98 PHELT-----GVKTALLIDAVQDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVIRAT 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+L H+P ++ + ++ + AL++G EG G+ Sbjct: 153 QGSLFHLPVVKGDVAEWITRLKEQGVPVYGTALENAVDYRAIPQ-SSSFALLVGNEGSGV 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + E T ++ + G ++LNV+ AA + LY Q Sbjct: 212 RRELLEMTTENVYIPIYGQAESLNVAVAAGILLYSLQ 248 >gi|49475390|ref|YP_033431.1| tRNA /rRNA methyltransferase [Bartonella henselae str. Houston-1] gi|49238196|emb|CAF27406.1| tRNA /rRNA methyltransferase [Bartonella henselae str. Houston-1] Length = 274 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 128/274 (46%), Positives = 170/274 (62%), Gaps = 5/274 (1%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSR 66 EKI K HY +L+R D K + + + ++LYG+H+V AAL NP R Sbjct: 2 REKIS--KSFHYNRLQRRSHDKKGFLPAARMKQKSVPMRHGTIYLYGLHSVHAALKNPKR 59 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 L T NAL RL+ P P+ P+ +D VG +AVHQG+ LET PL L Sbjct: 60 VFEHLYITPNALKRLN-IPESDLPCPITLCLPKQLDSFVGNDAVHQGIVLETEPLKPCQL 118 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + N+ L++V+D + DPHN+GAI+RSAVAF + +ITT R+SP ES VLAK+ASGALE Sbjct: 119 SELTNTDLVIVMDQITDPHNVGAIMRSAVAFKAEALITTYRHSPQESGVLAKAASGALEM 178 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 I YI + NL + LQ++H GF + GL S+ PLE + +KIAL+LGAEGKGLR KT+E Sbjct: 179 IHYITVQNLAETLQELHKAGFISFGLDSEGNHPLETTLTGEKIALVLGAEGKGLRKKTRE 238 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ L MPG IK+LNVSNAA +ALY + Sbjct: 239 NVCALTRLDMPGNIKSLNVSNAATIALYAAHKYL 272 >gi|16079917|ref|NP_390743.1| RNA methylase [Bacillus subtilis subsp. subtilis str. 168] gi|221310807|ref|ZP_03592654.1| hypothetical protein Bsubs1_15641 [Bacillus subtilis subsp. subtilis str. 168] gi|221315132|ref|ZP_03596937.1| hypothetical protein BsubsN3_15547 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320050|ref|ZP_03601344.1| hypothetical protein BsubsJ_15453 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324332|ref|ZP_03605626.1| hypothetical protein BsubsS_15612 [Bacillus subtilis subsp. subtilis str. SMY] gi|81637729|sp|P94538|YSGA_BACSU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YsgA gi|1770029|emb|CAA99602.1| hypothetical protein [Bacillus subtilis] gi|2635330|emb|CAB14825.1| putative RNA methylase [Bacillus subtilis subsp. subtilis str. 168] gi|291485297|dbj|BAI86372.1| hypothetical protein BSNT_04181 [Bacillus subtilis subsp. natto BEST195] Length = 248 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 104/277 (37%), Gaps = 30/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K++K+ K H + ++ + G H V A Sbjct: 1 MKQIESAKNQKVKDWKKLHTK-------------------KERTKTNTFLIEGEHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L +P L+ + + ++L + + E Q A+ Sbjct: 42 LKSPGIVKEILVKDETRIP-----SDLETGIQCYMLSEDAFSAVTETETPQQIAAVC--- 93 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + ++ ++++D V DP N+G ++R+A A D ++ + + + +SA Sbjct: 94 --HMPEEKLATARKVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSA 151 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP +R + + + + E ++ ALI+G EG G+ Sbjct: 152 QGSHFHIPVVRRNLPSYVDELKAEGVKVYGTALQNGAPYQEIPQ-SESFALIVGNEGAGV 210 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 E ++ + G ++LNV+ AAA+ +Y + Sbjct: 211 DAALLEKTDLNLYVPLYGQAESLNVAVAAAILVYHLR 247 >gi|282850185|ref|ZP_06259564.1| RNA methyltransferase, TrmH family [Veillonella parvula ATCC 17745] gi|294791837|ref|ZP_06756985.1| RNA methyltransferase, TrmH family [Veillonella sp. 6_1_27] gi|294793698|ref|ZP_06758835.1| RNA methyltransferase, TrmH family [Veillonella sp. 3_1_44] gi|282579678|gb|EFB85082.1| RNA methyltransferase, TrmH family [Veillonella parvula ATCC 17745] gi|294455268|gb|EFG23640.1| RNA methyltransferase, TrmH family [Veillonella sp. 3_1_44] gi|294457067|gb|EFG25429.1| RNA methyltransferase, TrmH family [Veillonella sp. 6_1_27] Length = 264 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 100/259 (38%), Gaps = 4/259 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS--AALNNPSRKIFQLLATKNALARL 81 ++++ K++ S Q+ ++ + + G+ ++ AA+ + + ++ Sbjct: 6 SKDNKTIKRIISLGQR-KNRQKYGEYIVEGIRSIRDIAAMGAVKTIVIRESKAQDKHVLD 64 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 D + P DK V QG+ + + L + LD V Sbjct: 65 LLDLDTVQFVPKFIAQDPIFDK-VDNTVNGQGVVAIVSKPKYDMESIHIDDGLYITLDGV 123 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+AVA GI K + +S AL IP L+ Sbjct: 124 QDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPLYEDITLSLLHDM 183 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + T + + P + L+LG EG G+ P+ T+ + M G ++ Sbjct: 184 VTESNMTTYVTALEHSNPYHTVRYAKRTMLVLGNEGNGVTPEVMNLCTNRIMIPMYGDME 243 Query: 262 ALNVSNAAAVALYITQNHF 280 +LNVS AAA+ +Y Q Sbjct: 244 SLNVSVAAALCMYKVQEQL 262 >gi|254446077|ref|ZP_05059553.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium DG1235] gi|198260385|gb|EDY84693.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium DG1235] Length = 273 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 91/259 (35%), Gaps = 7/259 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K + + R +Q G +S AL ++ + + DA Sbjct: 11 QNPRVKNLVKLRDR-RPRNQQGLFIAEGYRAISRALEKDVVP-TEIYFCPDCFLGDNEDA 68 Query: 86 NLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 L + + +K+ ++ LA+ + + + L++++ + Sbjct: 69 LLAQAQAAGATLFELSKHAFEKVAYRDRPEGLLAVIKQWNHTLDDLQLSDPPFLLIVEAI 128 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 P N+G ILRSA A D +I A +S + ++ + ++ Sbjct: 129 EKPGNLGTILRSADAAGVDAVICC-DSVTDLFNPNAVRSSTGVLFSMPTVTASSDEVIKW 187 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G +TI + + +A+++G+E GL K + + M G Sbjct: 188 IRQKGIRTIATTPHTDILYTDTDLRGPLAIVMGSEQFGLSEKWLSACDTKVLIPMAGQAD 247 Query: 262 ALNVSNAAAVALYITQNHF 280 +LNV+ A + L+ Sbjct: 248 SLNVAMATLITLFEAVRQR 266 >gi|110802916|ref|YP_699167.1| RNA methyltransferase [Clostridium perfringens SM101] gi|110683417|gb|ABG86787.1| RNA methyltransferase, TrmH family [Clostridium perfringens SM101] Length = 257 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 101/259 (38%), Gaps = 7/259 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +N+ +K+++ +K ++ + + G+ V A+ + + D Sbjct: 6 SKNNNLFKEIKRLKEK-KYRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTESFKEKNPDL 64 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + + + ++ E + + ++ +L++++D V D Sbjct: 65 FLKINENIKLIQMNEALLKQLCSTENPQGIVGVINMQNKEL-----KSGELVVLVDKVQD 119 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+R+A A GI+ TK + +S G++ +IP + +L Sbjct: 120 PGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSLDFVKSLKK 179 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + K +E K+ + +G EG G+ + + A + MPG ++L Sbjct: 180 EGYKLVVSS-LQGKNNFFEENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESL 238 Query: 264 NVSNAAAVALYITQNHFAK 282 NV+ A ++ +Y K Sbjct: 239 NVAVATSIMIYEKIRQSFK 257 >gi|302872439|ref|YP_003841075.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor obsidiansis OB47] gi|302575298|gb|ADL43089.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor obsidiansis OB47] Length = 253 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 103/242 (42%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL + + KI ++ + +A + + VK V IDK+ + Sbjct: 4 IEGKNPVKEALKSGA-KITEVYISNSAKDKETAQIIELCRQSGVVVKFVDKNKIDKMA-Q 61 Query: 108 EAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+ D + L++LD + DP N G+I+RSA Sbjct: 62 TKNPQGVIAIAQEFEYCDTDDILFEARQREEAPFLVLLDGITDPQNFGSIIRSAHLCGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ R S + + K+++GA+E++ R+ NL ++++ G + S KP+ Sbjct: 122 GIVIEARNSCPVTPAVEKASAGAIEYMKIARVVNLRRTIEELKEKGIWVFAADASSPKPV 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G+EGKG+ +E A + + G I + N S AA + + Sbjct: 182 YECDFTIPTCIVIGSEGKGISRLVKEGADFLIKIPQKGYINSFNASVAAGIIFFEVLKQR 241 Query: 281 AK 282 K Sbjct: 242 LK 243 >gi|317132980|ref|YP_004092294.1| RNA methyltransferase, TrmH family, group 3 [Ethanoligenens harbinense YUAN-3] gi|315470959|gb|ADU27563.1| RNA methyltransferase, TrmH family, group 3 [Ethanoligenens harbinense YUAN-3] Length = 258 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 13/251 (5%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPP 98 + + L G + V AL R + +L K R + +K V Sbjct: 5 KREKRKEDVLVGRNAVFEALRAG-RPVDSVLIAKGNSGGPVRRIVELCRERGVVIKDVSS 63 Query: 99 QTIDKIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 +D I G + HQG+A A L++ D +NDPHN+GAI+ Sbjct: 64 VKLDAICGGMS-HQGVAAMAAAHEYVGVSDMLHAAKERGEPPFLVICDEINDPHNLGAII 122 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A G+I KR + +A + K+ASGALE+ + + A + + Sbjct: 123 RTAECCGAHGVIIPKRGAVGLTAAVDKAASGALEY-MPVARVSNLAATVEELKKEGVWVY 181 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + +P + + A+I+G+EGKG+ +E + + M G I +LN S AA + Sbjct: 182 GTDMDGQPFYETDFSGGAAVIIGSEGKGISRLLREKCDVVVSIPMRGRITSLNASVAAGI 241 Query: 272 ALYITQNHFAK 282 LY + Sbjct: 242 VLYEAAKTRIR 252 >gi|329297950|ref|ZP_08255286.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Plautia stali symbiont] Length = 244 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + ++G+H V A L ++ ++ K R A ++ Q +D Sbjct: 2 SEIIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPLIAALEAQGIVIQLANRQWLDGQ 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V + VHQG+ P + L A + L++LD V DPHN+GA LRSA A Sbjct: 62 V-EGGVHQGIVARVKPGKNYQEGDLPDLLASLDQPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A K ASGA E++P IR++NL ++ + + +G + ++ Sbjct: 121 VHAVIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTMRLLQEYNVWIVGTAGEADH 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q + L++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 181 NLYQSKMTGAMVLVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240 Query: 279 HF 280 Sbjct: 241 QR 242 >gi|229825756|ref|ZP_04451825.1| hypothetical protein GCWU000182_01119 [Abiotrophia defectiva ATCC 49176] gi|229790319|gb|EEP26433.1| hypothetical protein GCWU000182_01119 [Abiotrophia defectiva ATCC 49176] Length = 279 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 114/300 (38%), Gaps = 45/300 (15%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +IS K +++I K ++S +K + + G+ V A Sbjct: 1 MEIISSKDNKRI------------------KYIRSLLEKGNIRKKNHQFVVEGIKLVDEA 42 Query: 61 LNNPSRKIFQLLATKNALARLDW------------DANL----PHPFPVKTVPPQTIDKI 104 L K+ +++ ++ L D N+ + V + Sbjct: 43 LEYG--KVLEVVCAESLYNELISGDLSGNRLLAENDKNITNYVKKGSSLLVVSDTVFKSM 100 Query: 105 VGKEAVHQGLALETAPLLSPTLDA--------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + QG+ LD L+VL+ DP N+G I+R+A A Sbjct: 101 S-ETKTPQGILAVAEMPDYRLLDKGFLEQAYTKNGKIKLLVLEDTADPGNLGTIMRTAEA 159 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I K + + +S G++ +P+ + +L + ++++ G Sbjct: 160 AGVTGVIMGKGTVDIFNPKVVRSTMGSIFRLPFTYVEDLKETIKELKKSGISFYATHLKG 219 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +K + + + A+I+G E +GL + + A + + M G +++LN + AAA+ +Y Sbjct: 220 EKSYKDIKYSGRSAIIVGNEARGLSDEVADLADTYVLIPMQGKVESLNAAVAAALMMYEV 279 >gi|83747961|ref|ZP_00944992.1| 23S rRNA Gm2251 methyltransferase [Ralstonia solanacearum UW551] gi|207723179|ref|YP_002253578.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251 2'-o-methyltransferase) protein [Ralstonia solanacearum MolK2] gi|207743429|ref|YP_002259821.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251 2'-o-methyltransferase) protein [Ralstonia solanacearum IPO1609] gi|83725379|gb|EAP72526.1| 23S rRNA Gm2251 methyltransferase [Ralstonia solanacearum UW551] gi|206588373|emb|CAQ35336.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251 2'-o-methyltransferase) protein [Ralstonia solanacearum MolK2] gi|206594826|emb|CAQ61753.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251 2'-o-methyltransferase) protein [Ralstonia solanacearum IPO1609] Length = 249 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 78/239 (32%), Positives = 119/239 (49%), Gaps = 7/239 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 L G H V+A L + ++ I ++ N R D A + + + I G Sbjct: 6 LLIGFHAVTARLRHDAQSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADNERLRGIAG 65 Query: 107 KEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A A L LD + LL+VLD V DPHN+GA LR A A + Sbjct: 66 TDRHQGVVAKAEALSLALNLDELLDGIDGPPLLLVLDGVTDPHNLGACLRVADAAGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Q Sbjct: 126 IAPKDRSVGINATVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQNLYQ 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 IAL++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ A Sbjct: 186 ADFKGPIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244 >gi|319406413|emb|CBI80053.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp. 1-1C] Length = 280 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 55/272 (20%), Positives = 106/272 (38%), Gaps = 13/272 (4%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 K+ + ++ K +++ N+K ++ ++ G+ V ALN I Sbjct: 8 KVKEITSL-------SNPIIKYLKALNKK-KNRNRESIFMAEGLKLVIDALNLGWT-IHT 58 Query: 71 LLATKNALARLDWDA----NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 L+ +KN+L+ + + + V + ++ I ++ + + S Sbjct: 59 LIVSKNSLSNSIIENTAANAIANGGSVIKASQKVLESITHRDNPQTVIGIFKQQWHSIEK 118 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + + + LD V DP N+G I+R+A A GII + S ++ G++ Sbjct: 119 IIRQIDDVYIALDRVRDPGNLGTIIRTADAAGAKGIILIGETTDPFSPETVRATMGSIFS 178 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +P R + T H G S + KN I L++G E +GL Sbjct: 179 VPLYRCNESTFLNWSTHFKGMIVGTHLKGSVDYRTIDFKNGPIILLMGNEQQGLSDVLVN 238 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +A + G +LN++ A A+ LY + Sbjct: 239 HCHKLARIPQCGHADSLNLAVATAIMLYEIRR 270 >gi|319404923|emb|CBI78523.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp. AR 15-3] Length = 282 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 50/271 (18%), Positives = 102/271 (37%), Gaps = 11/271 (4%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 K+ + ++ K +++ N+K ++ ++ G+ V A N Sbjct: 8 KVKEITSL-------SNPIIKDLKALNKK-KNRNREGIFMAEGLKLVIDAFNLGWTIHTL 59 Query: 71 LLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 +++ + + + + + V V + ++ I ++ + + S Sbjct: 60 IVSRNSLRNSIIENTAANTIANGGSVIKVSQKVLESITHRDNPQTVVGIFKQQWHSIEKI 119 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R + + LD V DP N+G I+R+A A GI+ + S ++ G++ I Sbjct: 120 IRRVDDVYIALDRVRDPGNLGTIIRTADAAGVKGIVLIGETTDPFSPETVRATMGSIFSI 179 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P R + T H G + KN I L++G E +GL Sbjct: 180 PLYRCNESTFLNWSTHFRGMIVGTHLKGPVDYRTIDFKNGPIILLMGNEQQGLSDVLVNH 239 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++A + G +LN++ A A+ LY + Sbjct: 240 CNNLARIPQCGHADSLNLAVATAIMLYEIRR 270 >gi|319779502|ref|YP_004130415.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Taylorella equigenitalis MCE9] gi|317109526|gb|ADU92272.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Taylorella equigenitalis MCE9] Length = 245 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 7/243 (2%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 L G H V+A + I ++ K++ R + V Q +D Sbjct: 2 SNTQILAGFHAVNARIKLAPDSIKEIYFESNRKDSRMRTLLERATELKIKTYAVDSQRLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + LA+ + L+ + LD + LL++LD V DPHN+GA LR+A A Sbjct: 62 ALAKGIKHQGVLAIASMQQLAVSIDDVLDVINEPALLLILDGVTDPHNLGACLRTADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S ++ + + A GA + +PYI ++NL L+ + G IG + ++K Sbjct: 122 VHAVIAPKDRSVGLNSTVQRVACGAADTVPYIMVTNLARTLRSLKERGIWIIGTTDATEK 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + A ++GAEG G+R T E+ + + M G +++LNVS A+AV LY + Sbjct: 182 SVYDIDAKLPTAWVMGAEGDGMRRLTSESCDQLVRIPMLGSVESLNVSVASAVCLYESLR 241 Query: 279 HFA 281 + Sbjct: 242 QRS 244 >gi|238897532|ref|YP_002923211.1| rRNA methylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465289|gb|ACQ67063.1| rRNA methylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 247 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKI 104 + +YG H++ A L + + ++ +N RL + Q +D Sbjct: 2 SDIIYGFHSIKAFLEHHPERFLEIFILQNNDSYRLQSLVKELKSAGLSILFTSRQYLDAQ 61 Query: 105 VGKEAVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 G +A + L ++ ++VLD + DPHN+GA LRSA A Sbjct: 62 TGGGVHQGIMAKVCSAHQYQENELPALLNSLDTPFVLVLDGITDPHNLGACLRSAEASGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I + S +A + K+ASGA E+IP IR++NL L+ + + IG + ++KK Sbjct: 122 QIVILPRDRSAPLNATVKKAASGAAENIPVIRVTNLARTLRVLKEYHLLIIGTAGEAKKT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + +AL++G+E KGLR T+E + + M G + +LNVS A V L+ Sbjct: 182 VYEARMTGSMALVMGSEEKGLRRLTREHCDHLIRIPMLGRVSSLNVSVATGVCLFEAVRQ 241 Query: 280 FA 281 Sbjct: 242 RN 243 >gi|161830029|ref|YP_001596726.1| RNA methyltransferase [Coxiella burnetii RSA 331] gi|161761896|gb|ABX77538.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA 331] Length = 270 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107 +YG+H VS L+ ++I +L +N RL V + ++ + + Sbjct: 27 IYGIHAVSGVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKGLGVKVILLSRTELNTLSNE 86 Query: 108 EAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+ + + + L LL++LD V DPHN+GA LRSA AF Sbjct: 87 K--HQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR 144 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K + + V+ K A GA E P+IR++NL+ + + G +G + +++ + Sbjct: 145 AVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLI 204 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ IA++LG+EG GLR T+E +A + + G +++LNVS A + LY Q Sbjct: 205 QEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQR 264 >gi|119513673|ref|ZP_01632675.1| rRNA methylase [Nodularia spumigena CCY9414] gi|119461678|gb|EAW42713.1| rRNA methylase [Nodularia spumigena CCY9414] Length = 261 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 96/257 (37%), Gaps = 5/257 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWD 84 + K+++ + ++ + + L G H + A + + W+ Sbjct: 6 QNSLVKQIRKLH-STKERHKQQLCLLEGTHLLQEACVVNYPLVTVCCTPEWQTAHPELWE 64 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 A H V+ V + + I Q + + V + L++ L+ + DP Sbjct: 65 AACSHSDRVEIVSKEILAAIA---TTVQPDGVVATAQRAINQTQVPFTGLVLALETIQDP 121 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G I+R+A A G+ + +S + ++++G + +L +Q+ Sbjct: 122 GNLGTIIRTAAATGATGLWLSDDSVDLDSPKVLRASAGQWFRVATAVSQDLKATIQQSQQ 181 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G Q + + ++LG EG GL P A + + +++LN Sbjct: 182 AGMQVVATLPTANLTYWDVDWRKPSLILLGNEGAGLSPDLASMADKQVKIPLSSGVESLN 241 Query: 265 VSNAAAVALYITQNHFA 281 V+ AAA+ +Y Q Sbjct: 242 VAIAAALMMYEAQRQII 258 >gi|297529131|ref|YP_003670406.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3] gi|297252383|gb|ADI25829.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3] Length = 251 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 55/277 (19%), Positives = 106/277 (38%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ ++ K + + L G H V A Sbjct: 1 MKRIESPKNARVKQWKKLLTK-------------------KGRDETGLFLLEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + + +L+ + W+ PV V + I E A Sbjct: 42 IKSNA-PLVELIVDERTAVPPGWNV---TGVPVTIVTEAVMRAISSTETPQGIAA--VCR 95 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+ V+ + L+ D V DP N+G ++R+A A D +I + + + + ++ Sbjct: 96 KLPAELEGVKTALLI---DAVQDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVVRAT 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+L H+P ++ + + G G + ++ ++ A+++G EG G+ Sbjct: 153 QGSLFHLPVVKGDLA-QWIARFKEQGIPVYGTALENAVDYRTVPQSSSFAILVGNEGSGV 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 RP T ++ + G ++LNV+ AA + LY Q Sbjct: 212 RPDLLRLTTENVYIPIYGRAESLNVAVAAGILLYSLQ 248 >gi|253996415|ref|YP_003048479.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8] gi|253983094|gb|ACT47952.1| RNA methyltransferase, TrmH family, group 3 [Methylotenera mobilis JLW8] Length = 250 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 110/242 (45%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V + L S + ++L ++ A + + V +D + G Sbjct: 6 ILFGFHAVLSRLRQHSASVQEILIDRDRVDARMKDLLNMAESSGVRTMQVERSRLDGMAG 65 Query: 107 KEAVHQGLALETAPLLSPTLDAVR-------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ P D ++LD V DPHN+GA LR A A Sbjct: 66 MNGRHQGVIARVVDTPIPYKDIHDILESDLSEPAFFLILDGVEDPHNLGACLRVADAMGV 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K + +A + K A GA E +P+I ++NL ++++ G +G + DS Sbjct: 126 HAVIAPKDRAAGLNATVRKVACGAAETVPFIAVTNLARTIRELKEAGVFVVGTTMDSPST 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L N IAL+LGAEG G+R T ET ++ + M G +++LNVS A+ + LY + Sbjct: 186 LLNTKLNGPIALVLGAEGDGMRRLTAETCDALMTIPMFGSVQSLNVSVASGICLYEVRRQ 245 Query: 280 FA 281 + Sbjct: 246 RS 247 >gi|317497615|ref|ZP_07955933.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895174|gb|EFV17338.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA] Length = 394 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 109/257 (42%), Gaps = 14/257 (5%) Query: 35 SFNQKSRHTSQ--PENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHP 90 N+K + + + G + V AL P KIF L ++ R Sbjct: 138 DLNKKKKQEKNMNHKEDLIAGRNAVIEALRAKKPIDKIFVLDGCQDGPIRTIVREAKKTD 197 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVND 143 +K V + ++++ + HQG+ A T++ ++LD + D Sbjct: 198 AILKFVDKERLNQLTNEH--HQGVVAIVAAYEYGTIEDLFKRAEEKGEDPFFILLDGIED 255 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GAI+R+A G+I K + + +AK+++GA+ + P ++++N+ + ++ Sbjct: 256 PHNLGAIIRTANLAGAHGVIIPKHRAVGITPTVAKTSAGAINYTPVVKVTNIGKTMDELK 315 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + + ++ I L++G EG G+ +E ++ + M G I +L Sbjct: 316 ERGMWFACA-DMDGEVIYRQNLTGSIGLVIGNEGSGVSRLVKEKCDFISSIPMKGDIDSL 374 Query: 264 NVSNAAAVALYITQNHF 280 N S AA V + Sbjct: 375 NASVAAGVLAFEVVRQR 391 >gi|282899513|ref|ZP_06307477.1| RNA methyltransferase TrmH, group 3 [Cylindrospermopsis raciborskii CS-505] gi|281195392|gb|EFA70325.1| RNA methyltransferase TrmH, group 3 [Cylindrospermopsis raciborskii CS-505] Length = 320 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 70/284 (24%), Positives = 132/284 (46%), Gaps = 16/284 (5%) Query: 11 KIFSLKD-SHYAKLRRNH---RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 KI + SH + + ++ +++++ + +N +YG H V +AL + R Sbjct: 21 KIKGKRVLSHPIRTHKKAEVIPPKPRLLDQPVQTKNSEEQDNDLIYGRHPVLSALES-HR 79 Query: 67 KIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 + +L + + + V P+ +D+I HQG+A + AP Sbjct: 80 NLNRLWITSRLRYDPRFHHLVLQAKDNGTVIDEVDPKRLDQIT-NGGNHQGVAAQIAPYT 138 Query: 123 SPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 L+ + +++V D + DPHN+GAI+R+A A G++ +R + ++ + Sbjct: 139 YTELEDLISQAQTVSEPVIVVADGITDPHNLGAIIRTAEAIGAQGLVIPQRRAVGITSTV 198 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 K A+GALE+ R+ NL+ AL+++ GF G ++ +PL L++G+E Sbjct: 199 VKVAAGALENFSVARVVNLSRALEQLKESGFWIYGTAATGSEPLHSVRFTGSTVLVVGSE 258 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G+GL TQ++ + + + G +LN S A +ALY Sbjct: 259 GEGLSMLTQKSCDVLVSIPLQGKTPSLNASVATGMALYEIYRQR 302 >gi|253579510|ref|ZP_04856779.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849011|gb|EES76972.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 245 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 106/239 (44%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K+F L ++ R + V + +D++ + Sbjct: 5 IEGRNAVLEAFRSGKCVDKLFILDGCQDGPVRTIAREARKKDTIINYVAKERLDQLS-ET 63 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ + A +++ + + +LD++ DPHN+GAI+R+A G Sbjct: 64 GAHQGVIAQVAAYEYASVEDILAKAREKGEDPFIFILDNIEDPHNLGAIIRTANLAGAHG 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR + ++ +AK+++GAL + P +++NL + ++ G + + + Sbjct: 124 VIIPKRRAVGLTSTVAKTSAGALNYTPVAKVTNLGHTIDELKEQGMWFVCA-DMGGETMY 182 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I +++G EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 183 NLNLTGPIGVVIGNEGEGVSRLIREKCDFVASIPMKGDIDSLNASVAAGVLGYEIVRQR 241 >gi|312862606|ref|ZP_07722847.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus vestibularis F0396] gi|311101866|gb|EFQ60068.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus vestibularis F0396] Length = 247 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 117/247 (47%), Gaps = 9/247 (3%) Query: 41 RHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 + T + +YGVH V+ +L K++ + + P + Sbjct: 2 KTTKETSLDIVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAEKKVSISWTPKK 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRS 153 T+ + G AVHQG L + L + L+++LD +NDPHN G+ILR+ Sbjct: 62 TLSDMTG-GAVHQGFVLRVSEFAYSDLSVIMDKAEQEENPLILILDGLNDPHNFGSILRT 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A GII K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 ADATQVTGIIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKESGFWVFGTD 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV + Sbjct: 181 MDGTPSHKWNTA-GKLALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLM 239 Query: 274 YITQNHF 280 Y + Sbjct: 240 YEVYRNR 246 >gi|260437951|ref|ZP_05791767.1| RNA methyltransferase, TrmH family, group 3 [Butyrivibrio crossotus DSM 2876] gi|292809702|gb|EFF68907.1| RNA methyltransferase, TrmH family, group 3 [Butyrivibrio crossotus DSM 2876] Length = 245 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 105/242 (43%), Gaps = 11/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + G + V A + K++ L K+ ++ V + +D++ Sbjct: 5 EFTIEGRNAVIEAFRSGKTIDKLYVLDGCKDGPVMTIIREAKKTDTIIRYVDREILDRLS 64 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K HQG+ A ++ + + +LD + DPHN+GAI+R+A Sbjct: 65 -KTGHHQGVVANAAAYDYAEVEDILNAAREKGEPPFVFILDGIEDPHNLGAIIRTANLAG 123 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I KR + +A +AK+++GAL + P +++NL+ ++++ G + + Sbjct: 124 AHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLSATIEELKKEGLWFVCA-DMGGE 182 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + I L++G EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 183 TMYNLNLTGPIGLVIGNEGEGVSRLVKEKCDYVASIPMKGNIDSLNASVAAGVLAYEIVR 242 Query: 279 HF 280 Sbjct: 243 QR 244 >gi|312867923|ref|ZP_07728127.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus parasanguinis F0405] gi|311096327|gb|EFQ54567.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus parasanguinis F0405] Length = 242 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YGVH V+ AL K++ + + P +T+ ++ Sbjct: 2 ENNDIVYGVHAVTEALQANTGNKLYIQEDLRGKNVDKIKALAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG L A L A + LL++LD + DPHN+G+I+R+A A + Sbjct: 62 T-EGAVHQGFVLRVAAFAYTDLAAILKQTAKEENPLLLILDGLTDPHNLGSIIRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V++K+++GA+EHIP R++NL+ L K+ GF G + Sbjct: 121 VSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKEEGFWIFGTDMNGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHQWNTA-GKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|295401939|ref|ZP_06811902.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus thermoglucosidasius C56-YS93] gi|294976069|gb|EFG51684.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus thermoglucosidasius C56-YS93] Length = 245 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 117/243 (48%), Gaps = 13/243 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104 F+ G + V AL + R+I ++ ++ + V+ VP + +D++ Sbjct: 1 MDFIIGKNPVIEALKS-KRQINKIWIAESVQRHSVQPIIQLAKQNGVLVQYVPKKKLDQM 59 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E HQG+ + A +D ++LD + DPHN+G+I+R+A A Sbjct: 60 V--EGTHQGIVAQVAAYRYYEIDDLFARASEKNEPPFFLILDELEDPHNLGSIMRTADAV 117 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR S +A +AK+++GA+E+IP R++NL + ++ G +G + +K Sbjct: 118 GAHGIIIPKRRSVGLTATVAKASTGAIEYIPVARVTNLARTMDELKERGVWIVGTDAKAK 177 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +AL++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 178 EDYRSLDGTMPLALVIGSEGKGIGRLILEKCDFLIRLPMRGHVTSLNASVAASLLMYEVY 237 Query: 278 NHF 280 Sbjct: 238 RKR 240 >gi|299135854|ref|ZP_07029038.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp. MP5ACTX8] gi|298601978|gb|EFI58132.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp. MP5ACTX8] Length = 267 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 104/246 (42%), Gaps = 14/246 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTI 101 LYG+H V A+ R++ + + AR D D V T + Sbjct: 1 MDVLYGLHPVEEAIRAGMRQLDHVSVAREREARRDARLDAVLDLCRAAGIRVNTESRDQL 60 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSA 154 + +A HQG+ L+ + + LD V DPHN+GA+LRSA Sbjct: 61 TRHAKTDA-HQGIVAFLRERKFLALEDLLNAPPGPTGFRFFLALDGVEDPHNLGALLRSA 119 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 DG+I +R S SA +AKS++GA EH+ ++ N+T AL+ M +GL Sbjct: 120 DGSGIDGVIVPERRSAPLSATVAKSSAGASEHVRIAQVVNITRALETMKKHNVWIVGLDE 179 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L+LG+EG GL + T + + M G + +LNVS A AV +Y Sbjct: 180 RGTPDYTDFDFRQDCCLVLGSEGSGLHELVKRTCDHLLRIPMAGSVSSLNVSVAGAVVMY 239 Query: 275 ITQNHF 280 Sbjct: 240 EAMRQR 245 >gi|167753257|ref|ZP_02425384.1| hypothetical protein ALIPUT_01529 [Alistipes putredinis DSM 17216] gi|167659188|gb|EDS03318.1| hypothetical protein ALIPUT_01529 [Alistipes putredinis DSM 17216] Length = 243 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 114/241 (47%), Gaps = 12/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVG 106 ++G+ V A+ + I +L K A +L D L H + VP + ++++ Sbjct: 5 LVFGIRPVVEAIEAGKQ-IEKLYIRKGAEGQLMTELRDLCLRHRIRTQEVPVEKLNRLT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ + +P+ L+ + + L+++ D V D N GAI RSA Sbjct: 63 -RGNHQGVVAQISPIGYVELNDILERVPEDETPLIVLFDGVTDVRNFGAIARSAECAGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I + + ++ +S++GAL IP R+ ++ + L+ + + G+Q +G + S+K L Sbjct: 122 GLIVPLKNAAPVNSEAIRSSAGALTAIPVCRVGSIRNTLKALQAEGYQVVGATEKSRKLL 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 AL++GAE G+ + + + M G I++LNVS AAAV L+ Sbjct: 182 YDADFRKPTALVMGAEDTGISKEVLKLCDEQLAIPMIGKIESLNVSAAAAVLLFEIVRQR 241 Query: 281 A 281 Sbjct: 242 I 242 >gi|218135121|ref|ZP_03463925.1| hypothetical protein BACPEC_03026 [Bacteroides pectinophilus ATCC 43243] gi|217990506|gb|EEC56517.1| hypothetical protein BACPEC_03026 [Bacteroides pectinophilus ATCC 43243] Length = 261 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 95/254 (37%), Gaps = 4/254 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K + ++R G VS A P+ +I + A AR + Sbjct: 7 NARVKNVIQLQTRARARKDSRQFVAEGFRMVSEA---PADRIVSIYA-SETFARCNSGYM 62 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 P + V ++ LA+ ++ L ++++++ DP N Sbjct: 63 STIQVPYEMVSDNVFAQMSDTRTPQGILAVIKMAEYGIGDIIAHDNGLYVIVENLQDPGN 122 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G I+R + A DGII + + +S G+L +P++ + L++M S G Sbjct: 123 LGTIIRMSEAAGVDGIIMSPNTVDIYNPKTIRSTMGSLYRVPFVYADDFAGTLEQMKSKG 182 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + + A ++G EG GL ++ + M G +++LN + Sbjct: 183 VELYAAHLEGSVEYTEPDYTKASAFVIGNEGNGLTDAVTNICSNRIRIPMAGKVESLNAA 242 Query: 267 NAAAVALYITQNHF 280 AA+V + Sbjct: 243 IAASVLTFEAARQR 256 >gi|322388153|ref|ZP_08061757.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus infantis ATCC 700779] gi|321140825|gb|EFX36326.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus infantis ATCC 700779] Length = 242 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQDDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + L+ + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYTELEQILAQTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKEEGFWTFGTDMNGTPCH 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 183 KWNT-SGKVALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241 >gi|321312399|ref|YP_004204686.1| putative RNA methylase [Bacillus subtilis BSn5] gi|320018673|gb|ADV93659.1| putative RNA methylase [Bacillus subtilis BSn5] Length = 248 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 104/277 (37%), Gaps = 30/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K++K+ K H + ++ + G H V A Sbjct: 1 MKQIESAKNQKVKDWKKLHTK-------------------KERTKTNTFLIEGEHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L +P L+ + + ++L + + E Q A+ Sbjct: 42 LKSPGIVKEILVKDETKIP-----SDLETGIQCYMLSEDAFSAVTETETPQQIAAVC--- 93 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + ++ ++++D V DP N+G ++R+A A D ++ + + + +SA Sbjct: 94 --HMPEEKLATARKVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSA 151 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP +R + + + + E ++ ALI+G EG G+ Sbjct: 152 QGSHFHIPVVRRNLPSYVDELKAEGVKVYGTALQNGAPYQEIPQ-SESFALIVGNEGAGV 210 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 E ++ + G ++LNV+ AAA+ +Y + Sbjct: 211 DAALLEKTDLNLYVPLYGQAESLNVAVAAAILVYHLR 247 >gi|119502817|ref|ZP_01624902.1| RNA methyltransferase TrmH, group 3 [marine gamma proteobacterium HTCC2080] gi|119461163|gb|EAW42253.1| RNA methyltransferase TrmH, group 3 [marine gamma proteobacterium HTCC2080] Length = 247 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 115/245 (46%), Gaps = 14/245 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 + ++YG H V A L R I L N + V+ V +D++ Sbjct: 2 SDWVYGFHAVEALLRREPRAIATLWLETNRRDKRAQTLLQLAADQGVAVERVSGAALDEV 61 Query: 105 VGKEAVHQGLALETAPLLS---------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 HQG+A++ + L ++S LL++LD V DPHN+GA LR+A Sbjct: 62 AA--GRHQGIAVQVKSGATTEAIDEAGLMVLLQRQDSPLLLILDGVTDPHNLGACLRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ + + S V K A GA + +P++R++NL L ++ + G IG S Sbjct: 120 AAGVTAVVVPQDGAAGLSPVARKVACGAADTVPFVRVTNLARTLGQLKAAGVWLIGTSDK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + L ++ + +A+++GAEG G+R T+E + L M G + +LNVS A + L+ Sbjct: 180 ASRTLFEQDFSGPVAIVMGAEGAGMRRLTEENCDFLVSLPMQGAVSSLNVSVATGICLFE 239 Query: 276 TQNHF 280 Sbjct: 240 AVRQR 244 >gi|291525521|emb|CBK91108.1| rRNA methylases [Eubacterium rectale DSM 17629] Length = 263 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 93/256 (36%), Gaps = 4/256 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ K +Q+ K++ + + G A P + + +++ + Sbjct: 6 SNKSIKNVQALLSKAKERKKQGVFVVEGPKMSFEA---PYDWVSAVYMSESFFNYDRFKE 62 Query: 86 NLPHPF-PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + V + + LA+ P + L+VL+ + DP Sbjct: 63 EKKRFLDKTEIVSDAVFKSMSDTQTPQGVLAIVKMPHYEIDELFKGDKTELLVLESIQDP 122 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G ++R+ GII + + +S G+L +P+ +L + ++ S Sbjct: 123 GNLGTMIRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPFYITDDLPETIEYAKS 182 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G K ++ ++G EG GL + + A + + M G +++LN Sbjct: 183 KGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVESLN 242 Query: 265 VSNAAAVALYITQNHF 280 + +A + +Y Sbjct: 243 AAISATLLMYECNRQR 258 >gi|328956925|ref|YP_004374311.1| putative RNA methylase [Carnobacterium sp. 17-4] gi|328673249|gb|AEB29295.1| putative RNA methylase [Carnobacterium sp. 17-4] Length = 261 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 49/274 (17%), Positives = 105/274 (38%), Gaps = 26/274 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M LI K+E++ + K Q R + + G H + A Sbjct: 7 MELILSTKNERVKNWKKL-------------------QSRRGRQKAGAYLIEGFHLIEEA 47 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L N + I +++ ++ + + + + T I K++ + QG+ Sbjct: 48 LKNHA-IILEIMISEEVVVGDIPEFDEAKQVEIST----EIAKLLSETETSQGIFAVVKK 102 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + LD ++ + LD+V DP N+G ++R+A A G++ K ++ + +S Sbjct: 103 IDQ--LDKPILTKPFLFLDNVQDPGNVGTMVRTADAAGFGGVVLGKGSVDLYNSKVLRSM 160 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P + ++ + L++G EG G+ Sbjct: 161 QGSHFHLPVYQGDLNEWFDLFFELEFPVFGTELNEEAVSYREIEPQAVYGLVMGNEGNGM 220 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + T ++ + G ++LNV+ AA + ++ Sbjct: 221 AAELLKRTTKNLYIPIVGQAESLNVAVAAGILMF 254 >gi|322392209|ref|ZP_08065670.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus peroris ATCC 700780] gi|321144744|gb|EFX40144.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus peroris ATCC 700780] Length = 242 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 119/240 (49%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQDDLRGKNVEKVKELATEKKVSISWTSKKSLSEMTD 63 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 64 -GAVHQGFVLRVSEFAYSELDQILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K S + V+AK+A+GA+EH+P R++NL+ L K+ GF G + Sbjct: 123 GVIIPKHRSVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWIFGTDMNGTPCH 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + KIALI+G EG+G+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 183 KWNT-SGKIALIIGNEGRGISSNIKKQVDEMITIPMDGHVQSLNASVAAAILMYEVFRNR 241 >gi|121535684|ref|ZP_01667488.1| RNA methyltransferase, TrmH family, group 3 [Thermosinus carboxydivorans Nor1] gi|121305715|gb|EAX46653.1| RNA methyltransferase, TrmH family, group 3 [Thermosinus carboxydivorans Nor1] Length = 248 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 10/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + G + V AL + KI ++ L R V+ V +D + Sbjct: 2 NEDIIAGRNVVMEALRSGRAINKILVAKGERHGLMREIVGLAREQGLVVQEVDAAKLDAL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+ AP+ +D + L++LD + DPHN+GAILR+A A Sbjct: 62 A-MGVRHQGVVAMVAPVAYVDVDEILVQAQTKGEAPFLVLLDELEDPHNVGAILRTADAT 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G++ KR S SA +AK+++GA+E++P RI N+ L+K+ G +G Sbjct: 121 GVHGVLLPKRRSCPLSATVAKTSAGAIEYVPVARIGNIVQTLEKLKKAGLWVVGADMAGD 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K + + +++G+EG+G+ T+E + + M G + +LN S A ++ LY Sbjct: 181 KAYYETDLTGPLVVVVGSEGRGMGRLTREACDFLVRIPMRGRLSSLNASVACSLILYEVL 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|332365573|gb|EGJ43333.1| RNA methyltransferase [Streptococcus sanguinis SK1059] Length = 247 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 9/241 (3%) Query: 47 ENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +N +YGVH V+ AL K++ + D + P +T+ ++ Sbjct: 8 KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 67 Query: 106 GKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG L A + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 68 D-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 126 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ F G Sbjct: 127 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEASFWIFGTDMQGTPS 186 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 187 HKWNTA-GKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRN 245 Query: 280 F 280 Sbjct: 246 R 246 >gi|323703775|ref|ZP_08115413.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum nigrificans DSM 574] gi|323531244|gb|EGB21145.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum nigrificans DSM 574] Length = 252 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 114/243 (46%), Gaps = 12/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104 + + G + V AL R I +L+ K A P++TV +DK+ Sbjct: 11 SEIIAGRNPVREALRAG-RPINKLVMAKGTAAGPLSEIIKLAREKNIPIQTVDKTHLDKL 69 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V HQG+ AP ++ +++LD +NDPHN+GAI+R+ A Sbjct: 70 VA-GTPHQGIIAYAAPKGYVDIEDILSVAKERGQDPFIVMLDEINDPHNLGAIIRTVDAA 128 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII +R + + +A +A++++GA+E++P R++NL ++++ G +G D Sbjct: 129 GAHGIIIPRRRAVALTATVARASAGAVEYVPVARVTNLDQTIRQLKELGLWVVGADMDGP 188 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + L++G EGKGL +E + L M G + +LN S AAA+ +Y Sbjct: 189 EVYWDAKLTGPLLLVIGGEGKGLGRLIKERCDMLVRLPMAGHVGSLNASVAAALLVYEVI 248 Query: 278 NHF 280 Sbjct: 249 RQR 251 >gi|189424926|ref|YP_001952103.1| RNA methyltransferase, TrmH family, group 3 [Geobacter lovleyi SZ] gi|189421185|gb|ACD95583.1| RNA methyltransferase, TrmH family, group 3 [Geobacter lovleyi SZ] Length = 246 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 12/244 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDK 103 + LYG++ V AL +RK F+L + V+ +++ Sbjct: 2 KEDILYGINPVREALR-GNRKAFELFVQTGGTDQRIAKLATLAEEKGIAVRRRERADLER 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + G HQG+ L+ AP + L+ L+VLD + DP N+GA++RSA Sbjct: 61 LAGNP-HHQGVVLKVAPFIYAELEDFLANHQESEGGMFLLVLDRIQDPQNLGALIRSAAC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I K + + V+ K+++GA+E IP I+++NL L+++ G GL+ ++ Sbjct: 120 AGVQGVIIPKDRACGMTPVVEKASAGAVETIPVIQVTNLVQTLERLKQAGCWIFGLAGEA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K + Q +AL++G+EG+G+RP ++ + + G I +LN S A + L+ Sbjct: 180 NKDIYQADYRGNLALVVGSEGEGIRPLVRKHCDLLLAIPHYGGISSLNASVAGGIVLFEA 239 Query: 277 QNHF 280 Sbjct: 240 ARQR 243 >gi|81300928|ref|YP_401136.1| RNA methyltransferase TrmH, group 3 [Synechococcus elongatus PCC 7942] gi|81169809|gb|ABB58149.1| RNA methyltransferase TrmH, group 3 [Synechococcus elongatus PCC 7942] Length = 519 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 75/268 (27%), Positives = 126/268 (47%), Gaps = 14/268 (5%) Query: 25 RNHRDYKKMQSFNQKSRHTSQ-PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--- 80 R RD + + N + ++ +YG H V AAL +R + ++ T Sbjct: 217 RPSRDRELNREVNTSPAGDQEATDHELIYGRHAVLAALQ-GNRTLNRIWVTPRLRYESTF 275 Query: 81 -LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNS 132 DA V VP + I ++ AVHQG+A + AP L Sbjct: 276 LELIDAAKAGGAVVDEVPVERIRQLTD-GAVHQGIAAQVAPYPYQELSDLIAQAKAATTD 334 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +++V D + DPHN+GAI+R+A A G++ +R + +A +AK A+GALE P R+ Sbjct: 335 PVIVVADGITDPHNLGAIIRTAEALGAHGLVIPQRRAVGVTAAVAKVAAGALESFPVARV 394 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NL AL+++ GF G + ++K+ + + + + L++G+E +GL T+E + Sbjct: 395 VNLNRALEELKDAGFWIYGAAGEAKQSIHETSFSGPVVLVVGSEDEGLSLLTRERCDHLI 454 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 + + G +LN S AA + LY Sbjct: 455 SIPLRGKTNSLNASVAAGMVLYEVSRQR 482 >gi|55820344|ref|YP_138786.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311] gi|116627180|ref|YP_819799.1| rRNA methyltransferase [Streptococcus thermophilus LMD-9] gi|55736329|gb|AAV59971.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311] gi|116100457|gb|ABJ65603.1| rRNA methylase [Streptococcus thermophilus LMD-9] gi|312277659|gb|ADQ62316.1| RRNA methyltransferase [Streptococcus thermophilus ND03] Length = 245 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 56/274 (20%), Positives = 108/274 (39%), Gaps = 31/274 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K++ I + + + +H + G H A Sbjct: 1 MEVIQSKQNASIKTARKL-------------------LQRKHRKTS--YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 I Q+ + R+ + VK V P+ + ++ + QG+ E A Sbjct: 40 -KASGAHILQIFVLEEMADRV------ANMSKVKLVSPEVLKELCETQ-TPQGIVAEVAK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D++ LL+ + V DP N+G ++R+A A DG+ + + + + +S Sbjct: 92 QTQALPDSLSGKYLLL--EDVQDPGNVGTMIRTADAADYDGVFLSDKSADIYNQKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R L S+ + + AL++G EG+G+ Sbjct: 150 QGSHFHLPIYRGPILEMVETCKKQDLPVLATTLSEVSVDYKAVKTDGNFALVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E+A + H++MPG ++LNV+ AA + ++ Sbjct: 210 SKEMAESANQLVHINMPGQAESLNVAVAAGILMF 243 >gi|315925068|ref|ZP_07921285.1| protein-export membrane protein SecF [Pseudoramibacter alactolyticus ATCC 23263] gi|315621967|gb|EFV01931.1| protein-export membrane protein SecF [Pseudoramibacter alactolyticus ATCC 23263] Length = 265 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 64/262 (24%), Positives = 104/262 (39%), Gaps = 15/262 (5%) Query: 31 KKMQSFNQKSRHTSQPEN--LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDA 85 K+ + K R + G + V AL R+I +L K+ + D Sbjct: 2 KQKHNAGAKPREGRGENADAFVIVGKNPVREALRTG-RQIDKLYVMKDNRDHVLGDLIDQ 60 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVL 138 V +V + + HQG+A TAP +L +A ++V+ Sbjct: 61 AKKRRIIVHSVDKAKLAALAD-GGHHQGIAAVTAPFAYQSLSAVLAKAEAAGEDAFVVVM 119 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 DHV DPHN GAI+RSA G+I R S S +AV K+++GA+ + Sbjct: 120 DHVLDPHNFGAIVRSANLCGAHGVIFPDRRSASVTAVSMKASAGAMN-ATSMVKVGNLAR 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + + + + P K+AL++G+EGKG+ P ++ A + G Sbjct: 179 CLETLKAQGFWVAAADMAGAPYYTRDFTGKLALVIGSEGKGISPNVKKHCDFTASIPNYG 238 Query: 259 IIKALNVSNAAAVALYITQNHF 280 I + N S AA + + Sbjct: 239 SIDSFNASVAAGILMAEAARQR 260 >gi|300704400|ref|YP_003746003.1| tRNA guanosine-2'-o-methyltransferase [Ralstonia solanacearum CFBP2957] gi|299072064|emb|CBJ43396.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum CFBP2957] Length = 249 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 79/239 (33%), Positives = 120/239 (50%), Gaps = 7/239 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 L G H V+A L + ++ I ++ N R D A + + + I G Sbjct: 6 LLIGFHAVTARLRHDAQSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADNERLRGIAG 65 Query: 107 KEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A A L LD + S LL+VLD V DPHN+GA LR A A + Sbjct: 66 TDRHQGVVAKAEALSLALNLDELLDGIEGSPLLLVLDGVTDPHNLGACLRVADAAGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Q Sbjct: 126 IAPKDRSVGINATVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQNLYQ 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 IAL++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ A Sbjct: 186 ADFKGPIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244 >gi|159184265|ref|NP_353372.2| rRNA methylase [Agrobacterium tumefaciens str. C58] gi|159139592|gb|AAK86157.2| rRNA methylase [Agrobacterium tumefaciens str. C58] Length = 286 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 90/257 (35%), Gaps = 4/257 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K +++ QK + + G+ V AL + A L A Sbjct: 24 NPIIKDIKALTQK-KGREETGTFMAEGLKLVIDALELGWTIKTLVYAKAAKGKPLVEQAA 82 Query: 87 L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + V V + I I ++ + + + + LD V D Sbjct: 83 VKTVASGGLVLEVSEKVIASITRRDNPQMVVGIFEQKWKPLKDIRPEKGETYIALDRVRD 142 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+R+A A G+I + S ++ G++ P R S K Sbjct: 143 PGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATMGSVFATPVARASVEEFLSWKKS 202 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + S + + + +++G E GL P+ A +A + G +L Sbjct: 203 AHVSVVATHLAGSVDYRKIDYAGKPVVILMGNEQSGLPPELAGKADQLARIPQQGRADSL 262 Query: 264 NVSNAAAVALYITQNHF 280 N++ A AV L+ + H Sbjct: 263 NLAIATAVMLFEARRHL 279 >gi|229824606|ref|ZP_04450675.1| hypothetical protein GCWU000282_01953 [Catonella morbi ATCC 51271] gi|229785977|gb|EEP22091.1| hypothetical protein GCWU000282_01953 [Catonella morbi ATCC 51271] Length = 281 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 73/289 (25%), Positives = 134/289 (46%), Gaps = 19/289 (6%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +S K S + +H K + KK+++ + P+ ++G H V Sbjct: 1 MKY-DTSRSRKSTSKRQTHKKKY--DETTDKKIENIPD-----ASPQEEIIFGKHAVMET 52 Query: 61 LNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L K+F ++ + H + VP +D++ + A HQGL L Sbjct: 53 LKKNKGINKLFYQKGLADSKISSIIELVKNHGGIFQEVPKSKLDELT-QGANHQGLVLTV 111 Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 P T++ L++LD + DPHN+G+ILR+A AF GII KR + Sbjct: 112 PPFDYQTIEGCLALAESKGQPPFLLILDGIEDPHNLGSILRTADAFGVHGIIIPKRRAVG 171 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + ++AK+++GA+EH+P +R++N+ ++ + + G + + +A+ Sbjct: 172 LTGIVAKTSTGAIEHVPVVRVANIAQTIELLQNQGIWVFATDMAGEDVRQWNS-QGPLAI 230 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++G EG+G+ P ++ A + + M G +++LN S AA V +Y H Sbjct: 231 VIGNEGQGVSPLVKQKADGIVTIPMVGHVQSLNASVAAGVLVYEVARHR 279 >gi|39938738|ref|NP_950504.1| cation transport ATPase [Onion yellows phytoplasma OY-M] gi|39721847|dbj|BAD04337.1| cation transport ATPase [Onion yellows phytoplasma OY-M] Length = 1056 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 71/236 (30%), Positives = 117/236 (49%), Gaps = 5/236 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 Q N+ +YG + + A+ RKI+QL + L H + V + + Sbjct: 815 ERKQIINMIIYGKNPIKEAIKA-QRKIYQLYLDEKIKDHLFIMFLQKHNIAYQLVDKKFL 873 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + K+ HQG+A LD Q ++LD +NDPHN+GAILR+ A + Sbjct: 874 YDLT-KQKTHQGVAANVCDYTFYDLDTYLDSAKFQKFLILDAINDPHNLGAILRTVEACA 932 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 DG+I +K++ ++ +AK + GALE+ ++NL + K+ +G S+S + Sbjct: 933 LDGVIMSKKHQVPLNSTVAKISCGALEYTKVFLVTNLHQTILKLKKNQVLIVGTDSNSSQ 992 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q KN +A+I+G EG G+R ++ + + M G I +LNVS AAA+ +Y Sbjct: 993 SFHQIPKNSSLAIIVGNEGIGIRHLLKQQCDLLVKIPMYGKINSLNVSVAAALMIY 1048 >gi|188588020|ref|YP_001921625.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str. Alaska E43] gi|188498301|gb|ACD51437.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str. Alaska E43] Length = 262 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 99/257 (38%), Gaps = 6/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82 + + YK+ + + ++ ++ + G V A+ + +L + Sbjct: 6 SKENTIYKEAKKLKDR-KNRNKINKYVIEGFRLVDEAIKANLDIDYLILTEIGYEKLDNY 64 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 D + V + ++ E +A+ + D V Sbjct: 65 IDKDKIKKHKVYCITDTLFKELASTENPQGIIAIVKMNNKKLDF----QGDFYLFCDKVQ 120 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+A A +GI+ +K + +S G+L ++P + ++ + Sbjct: 121 DPGNLGTIIRTAHAAGVNGIVLSKGTVDIYNEKTIRSTMGSLFYMPIYYDDDEFSLIKSL 180 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF I S +S K +E KI L +G EG G+ + + A + MPG ++ Sbjct: 181 KKDGFTLIVTSLESSKDFFKEDLKGKIILTVGNEGNGVSNEVLDLADRRVKIPMPGGAES 240 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ A ++ +Y Sbjct: 241 LNVAIATSIIIYEKVRQ 257 >gi|91227443|ref|ZP_01261807.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus 12G01] gi|269964501|ref|ZP_06178742.1| RNA methyltransferase [Vibrio alginolyticus 40B] gi|91188593|gb|EAS74884.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus 12G01] gi|269830839|gb|EEZ85057.1| RNA methyltransferase [Vibrio alginolyticus 40B] Length = 247 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 115/243 (47%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQG+ P + A S LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-RGANHQGIIARVKPAKQLNENDIDDILAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S +A ++K A GA E +P IR++NL ++ + G +G + ++ Sbjct: 122 AAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEKGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HFA 281 Sbjct: 242 QRI 244 >gi|312109242|ref|YP_003987558.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y4.1MC1] gi|311214343|gb|ADP72947.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y4.1MC1] Length = 245 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 117/243 (48%), Gaps = 13/243 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 F+ G + V AL + R+I ++ ++ + V+ VP + +D++ Sbjct: 1 MDFIIGKNPVIEALKS-KRQINKIWIAESVQRHSIQPIIQLAKQNGVLVQYVPKKKLDQM 59 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E HQG+ + A +D ++LD + DPHN+G+I+R+A A Sbjct: 60 V--EGTHQGIVAQVAAYRYYEIDDLFARASEKNEPPFFLILDELEDPHNLGSIMRTADAV 117 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR S +A +AK+++GA+E+IP R++NL + ++ G +G + +K Sbjct: 118 GAHGIIIPKRRSVGLTATVAKASTGAIEYIPVARVTNLARTMDELKERGVWIVGTDAKAK 177 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +AL++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 178 EDYRSLDGTMPLALVIGSEGKGIGRLILEKCDFLIRLPMRGHVTSLNASVAASLLMYEVY 237 Query: 278 NHF 280 Sbjct: 238 RKR 240 >gi|283834798|ref|ZP_06354539.1| RNA methyltransferase, TrmH family, group 3 [Citrobacter youngae ATCC 29220] gi|291069044|gb|EFE07153.1| RNA methyltransferase, TrmH family, group 3 [Citrobacter youngae ATCC 29220] Length = 243 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 103/241 (42%), Gaps = 8/241 (3%) Query: 48 NLFLYGVHTVSAALNNPSRK---IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + +F L ++ A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQDVFILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + ++LD V DPHN+GA LRSA A Sbjct: 62 SEGAVHQGIIARVKPGRQYQENDLPDLIAALDQPFFLILDGVTDPHNLGACLRSADAAGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E +P IR++NL ++ + +G + ++ Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELIGIPMAGSVSSLNVSVATGICLFEAVRQ 241 Query: 280 F 280 Sbjct: 242 R 242 >gi|253577160|ref|ZP_04854480.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. oral taxon 786 str. D14] gi|251843404|gb|EES71432.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. oral taxon 786 str. D14] Length = 250 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 112/247 (45%), Gaps = 14/247 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102 E ++ G H++ AL+ R I ++ + A L H V+ V + +D Sbjct: 2 EEQEWIGGKHSLLEALHAG-RTINKIWVAEGAQKHLTQPIVAEAKKHGIVVQFVDKRKLD 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ HQG+ + AP +D L++LD + DPHN+G+ILR+A Sbjct: 61 QMAPGL-QHQGVVAQVAPYAYAEVDDLLARAQERGEPPFLLILDEIEDPHNLGSILRTAE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLS 213 G+I KR S + +A ++K+++GA+E++P R++N T K + Sbjct: 120 CTGVHGVIIPKRRSAAVTATVSKTSAGAVEYVPVARVTNLVQTMEQLKEAGVWIVGTDVG 179 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + +A+++G E KG+ +ET + L M G + +LN S AA V + Sbjct: 180 AKEEMYRSGNVLTGPVAIVIGNENKGMGRLVRETCDVLVKLPMNGRLNSLNASVAAGVIM 239 Query: 274 YITQNHF 280 Y Sbjct: 240 YEVLRRR 246 >gi|225181305|ref|ZP_03734750.1| RNA methyltransferase, TrmH family, group 3 [Dethiobacter alkaliphilus AHT 1] gi|225168085|gb|EEG76891.1| RNA methyltransferase, TrmH family, group 3 [Dethiobacter alkaliphilus AHT 1] Length = 245 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 104/243 (42%), Gaps = 10/243 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102 E + G V AL KI ++L K + + + V+ + +D Sbjct: 2 EEKRMIEGRRPVMEALRAG-TKITRILLQKGSRGKPVDDILALAKEYSVKVEYLDKAALD 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 K HQG+ ET P A L++LDH+ DPHN+GA++R+A A Sbjct: 61 KRAT-SRNHQGVMAETPPFRYTPFADILAKAGDKPPFLVLLDHIQDPHNLGALIRTAYAA 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 CDGII +R + + ++A+GA E++P ++ NL L + G G D + Sbjct: 120 GCDGIIIPERRAAQMTPAAVRTAAGAAEYLPVAKVVNLARCLDECKDAGLWVYGADMDGE 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L++G+EG+GL +E + L M G + +LN S A A+ +Y Sbjct: 180 SVYTTGDYQGGTVLVIGSEGEGLGRLVKEKCDHLVQLPMQGKVASLNASVAGALLMYEVY 239 Query: 278 NHF 280 Sbjct: 240 RQR 242 >gi|116251522|ref|YP_767360.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Rhizobium leguminosarum bv. viciae 3841] gi|115256170|emb|CAK07251.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Rhizobium leguminosarum bv. viciae 3841] Length = 296 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 141/267 (52%), Positives = 184/267 (68%), Gaps = 14/267 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQS--FNQKSRHTSQPENLF-----------LYGVHTVSAA 60 S KD+HYA LRR HRD K+ + +++ + + LYG+HTV AA Sbjct: 16 SAKDTHYATLRRAHRDAKRERGEIPTPQAQKRKRGGEDWKPPALAPDQVHLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP RK +L T+NALARL+ D P + V PQ IDK++G EA+HQG+ LET P Sbjct: 76 LDNPERKKIKLFVTQNALARLEVDVEAL-GIPFEIVSPQEIDKVLGPEAIHQGVMLETRP 134 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A++ S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKSA Sbjct: 135 LPVRRLEALKESPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALE IPYI+++NL DAL ++H GF TIGL S+ PLE +K+AL+LG+EGKGL Sbjct: 195 SGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGEKVALVLGSEGKGL 254 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267 R KT+ET ++A L MPG IK+LNVSN Sbjct: 255 RQKTRETVNALARLDMPGSIKSLNVSN 281 >gi|55980244|ref|YP_143541.1| RNA 2'-O ribose methyltransferase [Thermus thermophilus HB8] gi|55771657|dbj|BAD70098.1| RNA 2'-O ribose methyltransferase [Thermus thermophilus HB8] Length = 260 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 93/258 (36%), Gaps = 7/258 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + K + + ++ + + + G V AL LL K Sbjct: 5 SPQNPRVKALAALKER-KERERTGRFLVEGRREVERALEAGLSLETLLLGPKAR----PE 59 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 D L V + + + ++ +E Q L + P S + + L++VL + Sbjct: 60 DRALAGGAEVLELSERALARVSTRENPAQVLGVFRLPRRSLAGVTLGAAPLVLVLLGLEK 119 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GAILR+A D ++ + V+ S + +A + + Sbjct: 120 PGNLGAILRAADGAGADLVLVAEGVDLFSPQVIRNSTGAVF--ALPVYPVAEGEAARFLE 177 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + ++ + +A +LGAE KGL + A + M G +L Sbjct: 178 EHNLPLVAATPEGERLYWEGDYRGGVAFLLGAEDKGLPEAWKRRAQVRVRIPMRGRADSL 237 Query: 264 NVSNAAAVALYITQNHFA 281 NV+ AA+ LY + Sbjct: 238 NVAVTAALLLYEALRQRS 255 >gi|262408867|ref|ZP_06085412.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647643|ref|ZP_06725210.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides ovatus SD CC 2a] gi|294810718|ref|ZP_06769366.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides xylanisolvens SD CC 1b] gi|298481741|ref|ZP_06999931.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D22] gi|262353078|gb|EEZ02173.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637009|gb|EFF55460.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides ovatus SD CC 2a] gi|294442051|gb|EFG10870.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides xylanisolvens SD CC 1b] gi|295087702|emb|CBK69225.1| rRNA methylase, putative, group 3 [Bacteroides xylanisolvens XB1A] gi|298271963|gb|EFI13534.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D22] Length = 247 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 103/245 (42%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGLMIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I HQG+ + + L + ++LD V D N GAI R+ Sbjct: 63 IT--RKNHQGVIAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I R S S +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 121 AAVDAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE G+ + + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILVYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRN 245 >gi|237715180|ref|ZP_04545661.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1] gi|229445013|gb|EEO50804.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1] Length = 246 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 103/245 (42%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 3 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGLMIPVQRVPVERINR 61 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I HQG+ + + L + ++LD V D N GAI R+ Sbjct: 62 IT--RKNHQGVIAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I R S S +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 120 AAVDAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKG 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE G+ + + M G I++LNVS AA + +Y Sbjct: 180 DYDYTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILVYEA 239 Query: 277 QNHFA 281 Sbjct: 240 VKQRN 244 >gi|134299475|ref|YP_001112971.1| tRNA/rRNA methyltransferase SpoU [Desulfotomaculum reducens MI-1] gi|134052175|gb|ABO50146.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum reducens MI-1] Length = 267 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 109/263 (41%), Gaps = 5/263 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALAR 80 + K ++ Q++ + L + G+ V AL++ + L A + + Sbjct: 4 SSQNLRVKLVKKLAQRN-FRQKERKLAVEGIRFVEEALSSTWQTEILLYTDQACQAQRGK 62 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-PTLDAVRNSQLLMVLD 139 + D V V + ++ E LA+ P + + L++++D Sbjct: 63 ILLDLARDKGVEVLAVSDAIMKELSDTETPQGMLAVLRQPDYTLEDIIRPDQKPLVVIVD 122 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N+G I+RSA A G+I K + ++ G+L H+P I++S++ +AL Sbjct: 123 GVQDPGNLGTIIRSADAAGASGVILLKGTVDIYNPKTLRATMGSLFHLPVIQVSDVNEAL 182 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + + S G + P+ + + +I+ EG G R + + MPG Sbjct: 183 EYLASIGVTLLVGEPAGGIPVFKANLQTPVGIIVANEGAGPREEIFRYNHQKITIPMPGC 242 Query: 260 IKALNVSNAAAVALYITQNHFAK 282 ++LNV+ A ++ LY K Sbjct: 243 AESLNVAIATSIILYEAIRQRHK 265 >gi|294620204|ref|ZP_06699538.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679] gi|314940174|ref|ZP_07847352.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133a04] gi|314942409|ref|ZP_07849252.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133C] gi|314952315|ref|ZP_07855326.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133A] gi|314994242|ref|ZP_07859545.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133B] gi|314997157|ref|ZP_07862143.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133a01] gi|291593557|gb|EFF25097.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679] gi|313588731|gb|EFR67576.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133a01] gi|313591329|gb|EFR70174.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133B] gi|313595574|gb|EFR74419.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133A] gi|313598809|gb|EFR77654.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133C] gi|313640613|gb|EFS05193.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133a04] Length = 254 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 103/276 (37%), Gaps = 24/276 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I L K ++ + L G H + A Sbjct: 1 MKEIQSAKNPRIKEL-------------------KKLHKKKYREEKAEYLLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + +I +L T+ + + V + + + LA+ T Sbjct: 42 -ASSNAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQGILAVMTL- 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + D S ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 100 ---TSEDTPDFSGGWLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P ++ ++ L++ K + A+I+G EG+G+ Sbjct: 157 QGSNYHLPVLQKDLADVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGV 216 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + ++ M G ++LNV AA + LY Sbjct: 217 SQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252 >gi|242372749|ref|ZP_04818323.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W1] gi|242349522|gb|EES41123.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W1] Length = 255 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 66/245 (26%), Positives = 117/245 (47%), Gaps = 11/245 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E++ + G H V A+ + KI K V+TVP +D + Sbjct: 8 EDIVIVGRHAVKEAIISGHAINKILIQDGIKKQQINEILKNAKAQKLIVQTVPKSKLDFL 67 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D +M+LD + DPHN+G+ILR+A A Sbjct: 68 S--NAPHQGVAALVAPYEYADFDQFLQSQKDKDGFSTVMILDGLEDPHNLGSILRTADAS 125 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S + + +AK+++GA++H+P IR++NL+ + ++ GF G ++++ Sbjct: 126 GVDGVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWVAGTAANNA 185 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 186 TDYRDLQADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 245 Query: 278 NHFAK 282 + Sbjct: 246 RKRNE 250 >gi|218441056|ref|YP_002379385.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 7424] gi|218173784|gb|ACK72517.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 7424] Length = 310 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 71/288 (24%), Positives = 127/288 (44%), Gaps = 25/288 (8%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN------------LFLYGVHTVSAALNN 63 K R R K + ++ +YG H V AAL Sbjct: 5 KRPGSNSARPQRRFSKGKPTLERRYAKPKPVGTSVSSQDTEVEDPDLIYGRHPVIAALE- 63 Query: 64 PSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 R+I ++ ++ + + V P + +I K A HQG+ + + Sbjct: 64 GDRQINKIWVMPKLRYDSRFHSLLTQAKANGTVIDEVDPHRLSQIT-KGANHQGIVAQIS 122 Query: 120 PLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 P L+ ++ ++++ D + DPHN+GA++R+ A G++ +R + Sbjct: 123 PYAYVELEELIEQAKARSSAPVILIADGITDPHNLGAMIRTTEAMGAQGLVIPQRRAAGI 182 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 ++ + K A+GALEH+P R+ NL+ AL+++ GF G +DS K L + L+ Sbjct: 183 TSTVMKVAAGALEHLPVARVVNLSRALEQLKEAGFWLYGTMADSGKLLHTIDFKGAVGLV 242 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +G+EG+GL TQ++ ++ + + G +LN S A A+ALY Sbjct: 243 VGSEGEGLSLLTQKSCDALVSIPLAGKTPSLNASVATAIALYEVFRQR 290 >gi|91791876|ref|YP_561527.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella denitrificans OS217] gi|91713878|gb|ABE53804.1| RNA methyltransferase TrmH, group 3 [Shewanella denitrificans OS217] Length = 246 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 109/246 (44%), Gaps = 10/246 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPV--KTVPPQTID 102 + F+YG+H + + L + +I +L + RL F + +T+D Sbjct: 2 KKQDFIYGIHAIESLLTHSPERILELWVLQGRDDDRLAPLLKAAQDFGCTAQRATKKTLD 61 Query: 103 KIVGKEAVHQGLALETA------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ L L++LD V DPHN+GA LR+A A Sbjct: 62 EKAD-SSQHQGVVARVQAAKVLAENELDALLDSTEVPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S + ++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVQGIIVPKDNSAGLTPTVSKVACGAAETVPLFQVTNLARTMRHLQDRGVWIVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q +A+ +GAE KGLR ++E + + M G + +LNVS A V L+ Sbjct: 181 DGALYQAELTGPLAIAMGAEDKGLRRLSREACDKLVSIPMAGSVSSLNVSVATGVCLFEA 240 Query: 277 QNHFAK 282 K Sbjct: 241 VRQRIK 246 >gi|329961137|ref|ZP_08299392.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides fluxus YIT 12057] gi|328532075|gb|EGF58885.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides fluxus YIT 12057] Length = 249 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHP--FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAVLKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I HQG+ T+ + L + L ++LD + D N GAI R+ Sbjct: 63 IT--RKNHQGVIAFTSSVTYQKTEDLVPFLFEQGKNPLFVMLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I + S S +A K+++GAL +P R +L LQ + GF + + Sbjct: 121 AAVDAVIIPAKNSVSVNADAMKTSAGALHTLPVCREQSLKGTLQFLKDSGFHIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE KG+ + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRN 245 >gi|316933379|ref|YP_004108361.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas palustris DX-1] gi|315601093|gb|ADU43628.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas palustris DX-1] Length = 275 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 115/258 (44%), Positives = 163/258 (63%), Gaps = 1/258 (0%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 +S +++ R + F + +R + LYG HTV+AAL NP RK +L T+N Sbjct: 7 NSRFSRRDGPPRGKPRPAGFRRDARERDGDGPVILYGWHTVTAALANPRRKFRKLWLTEN 66 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 A +L D N+ + V P ID+ +G +AVHQG+ E L +P +D + +++ Sbjct: 67 AARKLA-DENIDTRIAPEIVRPSEIDRRLGPDAVHQGMLAEADALETPRIDTLPEHGIVL 125 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD + DPHN+GAILRSA AF+ I+TT R+SP + VLAKSASGALE +P + + NL+ Sbjct: 126 VLDQITDPHNVGAILRSAAAFAVQAIVTTARHSPEATGVLAKSASGALELVPLVLVQNLS 185 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 AL +++ GF T+GL S+ + L +AL+LGAEGKGLR T++T T++A L M Sbjct: 186 RALTELNERGFLTVGLDSEGEDDLAAVALRQPLALVLGAEGKGLRQLTRQTCTTVARLDM 245 Query: 257 PGIIKALNVSNAAAVALY 274 PG IK+LNVSNAAA+ALY Sbjct: 246 PGEIKSLNVSNAAALALY 263 >gi|145297770|ref|YP_001140611.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850542|gb|ABO88863.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 249 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 114/246 (46%), Gaps = 14/246 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 +YG+H VSA L + ++ A K RL V++V +T+D Sbjct: 3 TELIYGIHAVSALLERTPERFIEVWALKGRDDDRLHPLLAEMESLGLKVQSVNRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLS----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 + HQG+ + L + L+VLD V DPHN+GA LRSA Sbjct: 63 A-EGNNHQGIMAKVIEAPKLAEHDLASLLDNLAEQKAQPFLLVLDGVTDPHNLGACLRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I + + ++V+ K A GA E +P I+++NL +L+++ G +G + Sbjct: 122 DAAGVHAVIVPRDKASGLTSVVRKVACGAAEVVPLIQVTNLARSLRELKDRGVWIVGTAG 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + Q +AL++GAEGKG+R T+E + + M G + +LNVS A V L+ Sbjct: 182 EADHDVYQAKLTGPMALVMGAEGKGMRRLTREHCDELVSIPMAGAVSSLNVSVATGVCLF 241 Query: 275 ITQNHF 280 Sbjct: 242 EAVRQR 247 >gi|55822234|ref|YP_140675.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066] gi|55738219|gb|AAV61860.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066] Length = 245 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 56/274 (20%), Positives = 108/274 (39%), Gaps = 31/274 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K++ I + + + +H + G H A Sbjct: 1 MEVIQSKQNASIKTARKL-------------------LQRKHRKTS--YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 I Q+ + R+ + VK V P+ + ++ + QG+ E A Sbjct: 40 -KASGAHILQIFVLEEMADRV------ANMSKVKLVSPEVLKELCETQ-TPQGIVAEVAK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D++ LL+ + V DP N+G ++R+A A DG+ + + + + +S Sbjct: 92 QTQALPDSLSGKYLLL--EDVRDPGNVGTMIRTADAADYDGVFLSDKSADIYNQKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R L S+ + + AL++G EG+G+ Sbjct: 150 QGSHFHLPIYRGPILEMVETCKKQDLPVLATTLSEVSVDYKAVKTDGNFALVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E+A + H++MPG ++LNV+ AA + ++ Sbjct: 210 SKEMAESANQLVHINMPGQAESLNVAVAAGILMF 243 >gi|253699965|ref|YP_003021154.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M21] gi|251774815|gb|ACT17396.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M21] Length = 249 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 67/244 (27%), Positives = 119/244 (48%), Gaps = 11/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 + +YG++ V AL SR+I +L + + PV+ ++ Sbjct: 2 SKEEIIYGLNPVMEALR-GSREIHELFVAGTSSDKRLEKLLKLAADRKIPVRQREKGDLN 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 ++ G E HQG+AL+ P LD V L++VLD V DPHN+GA++RSA Sbjct: 61 RLCGTE-HHQGVALKVEPFPYADLDDVLAELKGNQEGLVLVLDSVQDPHNLGALIRSAAC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 ++ K + +AV KS++GA E I +++N++ AL+ + GF G + Sbjct: 120 AGAHAVVIPKDRAAGVTAVAEKSSAGATETISVAQVTNISQALESLKKAGFWIYGADGSA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + L Q+ + +AL++G EG+G+RP ++ ++ + + G + +LN S A + L+ Sbjct: 180 RSTLYQQDFSGPVALVIGGEGEGIRPLVRKGCDAVVSIPLQGGVNSLNASVAGGIMLFEV 239 Query: 277 QNHF 280 Sbjct: 240 VRQR 243 >gi|319425089|gb|ADV53163.1| RNA methyltransferase, TrmH family, group 3 [Shewanella putrefaciens 200] Length = 246 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 108/244 (44%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---PVKTVPPQTID 102 + ++G+H V A L + +I +L + ++ + +D Sbjct: 2 KKQDIIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLAEQAKVFGTTIQVASRKALD 61 Query: 103 KIVGKEAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ L A L++LD V DPHN+GA LR+A A Sbjct: 62 DKA-ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S +A ++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVQGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q +A+ +GAE KGLR ++E+ S+ + M G + +LNVS A V L+ Sbjct: 181 DCELYQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGVCLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|325697470|gb|EGD39356.1| RNA methyltransferase [Streptococcus sanguinis SK160] Length = 242 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L A + ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G E KG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNTA-GKLALIIGNEAKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|322513916|ref|ZP_08066993.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Actinobacillus ureae ATCC 25976] gi|322120251|gb|EFX92204.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Actinobacillus ureae ATCC 25976] Length = 247 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 108/238 (45%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A L+N ++ ++L K RL N ++ V QT+D Sbjct: 5 IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLSPLLNELQRLGISIQQVNRQTLDNKAQG 64 Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E +A D + + + L++LD V DPHN+GA LR+A D + Sbjct: 65 EVHQGIIAKVVPQKELNEHDLDVILSQKQNPFLLILDGVTDPHNLGACLRTADVAGVDAV 124 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LE 221 I K S ++ K A GA E +P IR++NL ++++ I ++ + Sbjct: 125 IVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIWIVGTAGEATSGIY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q IAL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 185 QAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 242 >gi|319649135|ref|ZP_08003343.1| YacO protein [Bacillus sp. BT1B_CT2] gi|317388835|gb|EFV69654.1| YacO protein [Bacillus sp. BT1B_CT2] Length = 249 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 122/246 (49%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102 ++ ++ G + V L + R++++L +N + D + VP + +D Sbjct: 3 QQHDYVIGKNAVIETLKSG-RELYKLWMAENTVKGQAQQVVDLAAKKGVTIHYVPRKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V HQG+ + A LD ++VLD + DPHN+G+I+R+A Sbjct: 62 QMVS--GQHQGVVAQVAAYEYAELDDLFQKAEDRNEQPFILVLDEIEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ KR + + +AK+++GA+EHIP ++++NL+ L++M G +G + Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTNLSRTLEEMKGRGIWVVGTDAS 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ N +AL++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 180 GQQDYRSLDGNMPLALVIGSEGKGMGRLVKEKCDFLIRLPMAGKVTSLNASVAAGLLMYE 239 Query: 276 TQNHFA 281 + Sbjct: 240 VYRKRS 245 >gi|153834959|ref|ZP_01987626.1| RNA methyltransferase, TrmH family, group 3 [Vibrio harveyi HY01] gi|148868589|gb|EDL67677.1| RNA methyltransferase, TrmH family, group 3 [Vibrio harveyi HY01] Length = 247 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 112/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A HQG+ + S LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-NGANHQGIIARVKAAKQLNENDIDGILAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S +A ++K A GA E +P IR++NL ++ + G +G + ++ Sbjct: 122 AAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HFA 281 Sbjct: 242 QRI 244 >gi|72162462|ref|YP_290119.1| rRNA methylase [Thermobifida fusca YX] gi|71916194|gb|AAZ56096.1| putative rRNA methylase [Thermobifida fusca YX] Length = 275 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 102/262 (38%), Gaps = 11/262 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 K + +++ + G V AL+ P + +L AT A+ R Sbjct: 10 RSPRIKGARRLAKRA-FRQRERRFLAEGPQAVREALDLPD-VVHELYATAEAMQRHTALI 67 Query: 86 NLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 PV V + ++ L + L AV +L++VL HV D Sbjct: 68 RTAEQAGIPVHRVTLDVMGELAQTVTPQ--GLLAVCSFVDVPLSAVDRPRLVVVLSHVRD 125 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N G +LRSA A D +I T + ++++G+L H+P + + + + Sbjct: 126 PGNAGTVLRSADAAGADAVIFTDASVDPYNGKCVRASAGSLFHLPVVVGVRIEEVTGFLR 185 Query: 204 SWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 G + K+ L++ + +A I G E GL +T A + + G Sbjct: 186 DAGLTLLAADGQGKRTLDEAADAGMLTGPVAWIFGNEAWGLPQETLALADETVSVPIYGR 245 Query: 260 IKALNVSNAAAVALYITQN-HF 280 ++LN++ AAAV LY T Sbjct: 246 AESLNLATAAAVCLYATAREQR 267 >gi|212637935|ref|YP_002314455.1| rRNA methylase [Anoxybacillus flavithermus WK1] gi|212559415|gb|ACJ32470.1| rRNA methylase [Anoxybacillus flavithermus WK1] Length = 246 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 11/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + G + V AL + KI+ ++ + V+ VP + +D++ Sbjct: 2 MDLIIGKNPVLEALKSGREMNKIWIAEGSQRGQMQSIIQLAKEMGITVQYVPKKKMDQLS 61 Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 HQG+ + A +D + ++LD + DPHN+G+I+R+A A Sbjct: 62 D--GNHQGVIAQVAAYRYYDIDDLFKKAEEQGEAPFFIILDELEDPHNLGSIMRTADAVG 119 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII KR S S +A +AK+++GA+E++P R++NL + ++ G G + + Sbjct: 120 AHGIIIPKRRSVSLTATVAKASTGAIEYVPVARVTNLARTVDELKERGVWIFGTDAKGTQ 179 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 Q +AL++G+EGKG+ ++ + L M G + +LN S AA++ +Y Sbjct: 180 DYRQLDGVIPLALVIGSEGKGISRLLRDKCDVLVRLPMIGHVTSLNASVAASLLMYEVYR 239 Query: 279 HF 280 Sbjct: 240 KR 241 >gi|319939872|ref|ZP_08014227.1| TRNA/rRNA methyltransferase [Streptococcus anginosus 1_2_62CV] gi|319810883|gb|EFW07202.1| TRNA/rRNA methyltransferase [Streptococcus anginosus 1_2_62CV] Length = 242 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YGVH V+ AL N K++ + D + + + ++ Sbjct: 2 ENNDIVYGVHAVTEALMANTGNKLYIQDDLRGKNVAKMKDLAAEKKVSISWTTKKILQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L + +A+ ++ LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVSEFAYTDFEAMLKMATQEDNPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G + Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKHAGFWIFGTDMNGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 STKWNTA-GKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|212633586|ref|YP_002310111.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella piezotolerans WP3] gi|212555070|gb|ACJ27524.1| RNA methyltransferase TrmH, group 3 [Shewanella piezotolerans WP3] Length = 247 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 107/243 (44%), Gaps = 8/243 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102 + +G+H V A L N ++ ++ + + + V+ + +D Sbjct: 2 KKQDITFGLHAVEAVLQNSPERVIEIWVLQGRDDKRLIPILEIASQWGVSVQYASRKALD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAF 157 +A A + D + L++LD V DPHN+GA LR+A A Sbjct: 62 DKSAGGQHQGVVAKVKAAKILNDNDLHAMLDGTETPFLLILDGVTDPHNLGACLRNADAA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII K S + V++K A GA E +P +++NL ++ + G G + ++ Sbjct: 122 GVQGIIVPKDNSVGLTPVVSKVACGAAEIVPLYQVTNLARTMRSLQDKGIWIAGAAGEAD 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + Q +A+ +GAEGKGLR T+E+ S+ + M G + +LNVS A + L+ Sbjct: 182 SDVYQASLTGPLAIAMGAEGKGLRRLTRESCDSLISIPMAGSVSSLNVSVATGICLFEAV 241 Query: 278 NHF 280 Sbjct: 242 RQR 244 >gi|197104675|ref|YP_002130052.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1] gi|196478095|gb|ACG77623.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1] Length = 265 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 91/258 (35%), Positives = 139/258 (53%), Gaps = 5/258 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLD 82 R + R KK + + + P + +++G H V AAL NP R +LLAT +++ Sbjct: 7 RNDARRGKKFRPQSGFRKPREAPSDEWIWGWHAVEAALANPRRGAPLRLLATPEKAKQIE 66 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDH 140 I + + + AVHQG+AL APL L +L++LD Sbjct: 67 ARFGRLKALEP--ADNHAIAQALPQGAVHQGVALRPAPLPEADLADFEPRPGAVLLMLDQ 124 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+GAILRSA AF G+I R++P + LAK+A+GA+E P + NL+ AL Sbjct: 125 VTDPQNVGAILRSAAAFGAAGLILQDRHAPKLTGALAKAAAGAVERTPVAHVVNLSRALD 184 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 ++ G++T+GL+ ++ L + + + L+LG+EG+GLR E +A + MPG Sbjct: 185 ELIDAGWRTVGLAGGGERSLGEVLDGSPVVLVLGSEGEGLRRLVAERCDELARIPMPGGF 244 Query: 261 KALNVSNAAAVALYITQN 278 ++LNVSNAAA+ALY Sbjct: 245 ESLNVSNAAAIALYEASR 262 >gi|254230075|ref|ZP_04923473.1| RNA methyltransferase, TrmH family, group 3 [Vibrio sp. Ex25] gi|262393043|ref|YP_003284897.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. Ex25] gi|151937409|gb|EDN56269.1| RNA methyltransferase, TrmH family, group 3 [Vibrio sp. Ex25] gi|262336637|gb|ACY50432.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. Ex25] Length = 248 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 115/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQG+ P + A S LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-RGANHQGIIARVKPAKQLNENDIDDILAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S +A ++K A GA E +P IR++NL ++ + G +G + ++ Sbjct: 122 AAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEKGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|119356408|ref|YP_911052.1| RNA methyltransferase [Chlorobium phaeobacteroides DSM 266] gi|119353757|gb|ABL64628.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium phaeobacteroides DSM 266] Length = 252 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 59/250 (23%), Positives = 107/250 (42%), Gaps = 8/250 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 +K + Q E +YG + V L I ++ N + + Sbjct: 2 EKEKDMEQQEK-VVYGRNAVLELLLKKPDSIEKIYFQFNTSHPKLKEILVSARRQKLVTG 60 Query: 98 PQTIDKIVGKEAV--HQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAI 150 ++++ HQG+ + + T++ LL++L + DPHNIGAI Sbjct: 61 KARLERLSLMAGTTKHQGVCALVSAVSYYTIEEVLDKPRNTFPLLLILQGLEDPHNIGAI 120 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A A + D ++ + +A + K+++GAL H+ ++ +L L+ +H F I Sbjct: 121 IRTAEAVAADAVLLIEGKGSPVNATVHKASAGALSHMRVCKVKSLVRCLEFLHERKFLII 180 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 D++ +A++LGAEG GL P+ + + M G +++LNVS A Sbjct: 181 AADMDAEINYTDIDLTKALAIVLGAEGSGLAPEAVKFCDHTVRIPMAGCVESLNVSVTAG 240 Query: 271 VALYITQNHF 280 V LY Sbjct: 241 VLLYEAMRQR 250 >gi|296331587|ref|ZP_06874056.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675454|ref|YP_003867126.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151182|gb|EFG92062.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413698|gb|ADM38817.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str. W23] Length = 248 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 102/277 (36%), Gaps = 30/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K++K+ K H + ++ + G H V A Sbjct: 1 MKQIESAKNQKVKDWKKLHTK-------------------KERTKTNTFLIEGEHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L +P L+ + + ++L + + E Q A+ Sbjct: 42 LKSPGTVKEILIKDETKIP-----SDLDVSIQCYVLSEDAFSAVTETETPQQIAAVC--- 93 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + Q ++++D V DP N+G ++R+A A D ++ + + + +SA Sbjct: 94 --HMPEEKLASPQRVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAYNGKTLRSA 151 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP +R + T + + + ALI+G EG G+ Sbjct: 152 QGSHFHIPVVRRNLHTYVDELKAEGVKVYGTALQNGAPYRDMSQAEF-FALIVGNEGAGV 210 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 E ++ + G ++LNV+ AAA+ +Y + Sbjct: 211 NAALLEKTDLNLYVPLYGQAESLNVAIAAAILVYHLR 247 >gi|83749783|ref|ZP_00946757.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551] gi|207743229|ref|YP_002259621.1| trna/rrna methyltransferase protein [Ralstonia solanacearum IPO1609] gi|83723540|gb|EAP70744.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551] gi|206594626|emb|CAQ61553.1| trna/rrna methyltransferase protein [Ralstonia solanacearum IPO1609] Length = 259 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 101/258 (39%), Gaps = 8/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLD 82 R++ +K +++ + ++ + L G+H V+A L+ L++ ++ A + Sbjct: 6 SRDNAVFKHLKALSGSTQQRRRAGQSVLDGIHLVAAYLDAGHTPAQCLVSERHLAHPEVA 65 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 P V + + V G+ L R ++LD + Sbjct: 66 PLLARVDPQHVILLADSLFAPLT---TVVNGIDLMAVIDTPEGHLPHRIEHDCVILDGIQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILR A A + T + + SA ++A GA H+ + ++ Sbjct: 123 DAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNIVEHCTFESMHARL 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 H + SS ++ + + + G EG G+ + T+ + PG +++ Sbjct: 183 HVPL---LATSSHARHAVFDVPLGKPVGWVFGNEGAGVSEQWLS-VTTPISIPQPGGMES 238 Query: 263 LNVSNAAAVALYITQNHF 280 LNV+ AAA+ L+ Sbjct: 239 LNVAAAAAICLFEAVRQR 256 >gi|313900465|ref|ZP_07833958.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. HGF2] gi|312954527|gb|EFR36202.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. HGF2] Length = 240 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 108/237 (45%), Gaps = 9/237 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG + V L + I ++L + PVK + + +D+++ Sbjct: 4 YVYGKNVVKQLLQDGK-PIHEVLIQEGIRDTALEGEIKKRRIPVKVLGRKKMDQLL--NG 60 Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+A + L+ LL++LD + DPHN+GAILR+ DG+I Sbjct: 61 NHQGIAACIDDYKTWELEELLESVPQGKQPLLVMLDGLEDPHNLGAILRTCDCIRADGVI 120 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + + +AK ++GA++ + ++NL A++ + G+ +G ++ + + Sbjct: 121 IGKHRNVRLTPTVAKVSTGAIDTVKVSVVTNLVQAIKYLKKQGYWVVGTDFENSRDYREG 180 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + L++G+EG G+ ++ L M G + +LN S AA + LY Sbjct: 181 QYDVPLVLVIGSEGFGISSLVKKNCDYCVRLPMEGSVSSLNASVAAGILLYQIHAQR 237 >gi|229076064|ref|ZP_04209032.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18] gi|228706927|gb|EEL59132.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18] Length = 265 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|52840348|ref|YP_094147.1| tRNA/rRNA methyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627459|gb|AAU26200.1| tRNA/rRNA methyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 258 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 123/242 (50%), Gaps = 9/242 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 ++YG+H VSA L NP R I +L ++ + + + P++ + Q +++ Sbjct: 14 YVYGLHAVSALLANPHRMIKKLFVNQDRIDKRLHEFLVKAENAHVPIEKLSAQKMNQQFS 73 Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + +AL +A L+ + L+++LD + DPHN+GA LRSA A D Sbjct: 74 EFTHQGVVALASALAEYGESDLVTLLEKSKKPVLILILDGITDPHNLGACLRSADATGVD 133 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S S + V++K A GA E IP +R++NL A+ + G G + +++ L Sbjct: 134 FVVIPKDKSASITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAAGEAENLL 193 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + IAL++GAEG GLR T+E + L M G +++LNVS A V+LY Sbjct: 194 YAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQR 253 Query: 281 AK 282 + Sbjct: 254 GQ 255 >gi|228923305|ref|ZP_04086593.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836259|gb|EEM81612.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 265 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKAG--IVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGKVTPAGSFALIVGNEGNGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|170754304|ref|YP_001782766.1| RNA methyltransferase [Clostridium botulinum B1 str. Okra] gi|169119516|gb|ACA43352.1| RNA methyltransferase, TrmH family [Clostridium botulinum B1 str. Okra] Length = 259 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 108/262 (41%), Gaps = 9/262 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ K+++ +K ++ +Q ++ + G AL + S + ++ + +L +L+ Sbjct: 4 SKDNQLIKEVRKLREK-KYRTQNKSFIIEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61 Query: 84 ---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 N+ + V + I G QG+ LD +L+ D Sbjct: 62 LYKKYNINNDIETYVVNYSVLKSI-GNTENPQGIVSVINYFKKEKLDLQNGFYILV--DK 118 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A G+ITTK + +S G++ +IP I NL Sbjct: 119 VQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENLEVVKS 178 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + + ++N I + +G EG G+ + A + MPG Sbjct: 179 LQKKGFKLLVSSLDTNSNFYDVNMEN-NIIIAVGNEGNGISEVLNTLSDIKAKIPMPGAA 237 Query: 261 KALNVSNAAAVALYITQNHFAK 282 ++LNV+ A ++ + K Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259 >gi|325282460|ref|YP_004255001.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus proteolyticus MRP] gi|324314269|gb|ADY25384.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus proteolyticus MRP] Length = 239 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 115/238 (48%), Gaps = 7/238 (2%) Query: 50 FLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG + V+ AL ++ ++A AR V+ P +D++ G Sbjct: 2 LIYGRNPVTEALREGRVEEVLLAHGVEDAFARQLRALADEAGVRVRQAPRIELDQLAGTT 61 Query: 109 AVHQGL------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A L + + + + + LL++LD + DP N GAI+RSA G+ Sbjct: 62 AHQGVLAEAEELSWSSPQAIWDLAERRGEAPLLVLLDGITDPRNFGAIVRSAEVLGAHGV 121 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + +R S SAV+AK+A+GA ++P +++ NL ++++ G + ++ +PLE+ Sbjct: 122 VVEERRSAPLSAVVAKTAAGATAYLPVVQVKNLPRFIEELKDRNVWVYGAAGEAAQPLER 181 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL++G+EG GLR +E + + + G +++LN S AA + +Y Sbjct: 182 TDLSGPVALVIGSEGDGLRRLVRERCDGLVSIPVRGQVQSLNASVAAGILIYEAARRR 239 >gi|237756237|ref|ZP_04584798.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium yellowstonense SS-5] gi|237691595|gb|EEP60642.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium yellowstonense SS-5] Length = 248 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 115/243 (47%), Gaps = 5/243 (2%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + +L ++G + V AL L+A + R + V+ V Q I+ Sbjct: 2 EKENHLVIWGRNPVIEALKAGRSLEKILIAHDSHPPRELLELANEKKVKVQRVSRQKIED 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSC 159 + + +AL + + + + ++++LDH+ DP N+G+ILR+A F Sbjct: 62 LANTKKTQGVVALVSPIKYYDENEIIDKTIKEKGIMLILDHITDPQNVGSILRTAEIFGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K S + V+ K+++GA+ H+P ++ +L + ++K G + + Sbjct: 122 SGVIIPKERSSPINEVVIKASTGAVFHLPIAKVGSLRNVIEKFKKKGGWVV-AVEKGGRN 180 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + IAL++G+EGKG+ E A +A + M G I +LNVSNA ++AL+ Sbjct: 181 IAEIDFPYPIALVVGSEGKGVSKSILEEADIIATIPMVGKITSLNVSNATSIALWELFKR 240 Query: 280 FAK 282 K Sbjct: 241 RIK 243 >gi|307546117|ref|YP_003898596.1| RNA methyltransferase, TrmH family, group 3 [Halomonas elongata DSM 2581] gi|307218141|emb|CBV43411.1| RNA methyltransferase, TrmH family, group 3 [Halomonas elongata DSM 2581] Length = 270 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 75/260 (28%), Positives = 115/260 (44%), Gaps = 12/260 (4%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 M + + + +YGVH V A + + +A RL L Sbjct: 1 MSKQSHRRGPKAPGGLDAVYGVHAVRALIERGEMPRELWVQDGDASERLAELVALARKGN 60 Query: 93 VKTV--PPQTIDKIVGKEAVHQGLALETAP---------LLSPTLDAVRNSQLLMVLDHV 141 K V P T+D++ + AVHQG+ P +V + LL+VLD + Sbjct: 61 AKVVNQPRDTLDRLA-QGAVHQGVVAFCPPLAFEAEASLWHRLQGWSVEAAPLLLVLDGI 119 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 D HN GA LRSA A G++ K + +A + K A GA E +P R++NL +L + Sbjct: 120 TDVHNFGACLRSADAAGAHGVVVPKDRAAPLNATVRKVACGAAESVPVYRVTNLARSLAR 179 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 M G G + +++ + AL++GAEGKG+R T+E + L M G + Sbjct: 180 MKELGVWVTGTAGEAEASVYDADFTGATALVMGAEGKGMRRLTREACDGLVKLPMAGQVA 239 Query: 262 ALNVSNAAAVALYITQNHFA 281 +LNVS A + L+ A Sbjct: 240 SLNVSVATGICLFEAVRQRA 259 >gi|228987811|ref|ZP_04147920.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771859|gb|EEM20316.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 265 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 108 ESEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVIRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGGFALIVGNEGNGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|326942345|gb|AEA18241.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar chinensis CT-43] Length = 254 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 1 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 42 LKAG--IVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 97 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 153 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 212 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248 >gi|206969532|ref|ZP_03230486.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134] gi|228910385|ref|ZP_04074200.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200] gi|228941740|ref|ZP_04104287.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954830|ref|ZP_04116850.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228974664|ref|ZP_04135230.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981258|ref|ZP_04141558.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407] gi|229072063|ref|ZP_04205272.1| RNA methyltransferase, TrmH [Bacillus cereus F65185] gi|229081814|ref|ZP_04214306.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2] gi|229180880|ref|ZP_04308215.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W] gi|229192762|ref|ZP_04319720.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876] gi|206735220|gb|EDZ52388.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134] gi|228590601|gb|EEK48462.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876] gi|228602437|gb|EEK59923.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W] gi|228701402|gb|EEL53896.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2] gi|228710997|gb|EEL62963.1| RNA methyltransferase, TrmH [Bacillus cereus F65185] gi|228778458|gb|EEM26725.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407] gi|228785067|gb|EEM33080.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228804819|gb|EEM51418.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817952|gb|EEM64030.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849151|gb|EEM93990.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200] Length = 265 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKAG--IVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|119897231|ref|YP_932444.1| tRNA/rRNA methyltransferase [Azoarcus sp. BH72] gi|119669644|emb|CAL93557.1| tRNA/rRNA methyltransferase [Azoarcus sp. BH72] Length = 254 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 124/249 (49%), Gaps = 7/249 (2%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVP- 97 ++ +YG H VSA L + + ++ + + R+ + VP Sbjct: 2 AKPAESSATRLIYGFHAVSAKLRHAPEAVLEVYLSGDRKDARVKKFLATAEAIGTRIVPS 61 Query: 98 -PQTIDKIVGKEAVH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + +D +VG + A L+ LD + + L++VLD V DPHN+GA LR Sbjct: 62 EHERLDALVGTRRHQGVVARIDATRREIKLADVLDNLDENALILVLDGVQDPHNLGACLR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 A A ++ K + +A AK ASGA + +PYI ++NL AL++M G +G Sbjct: 122 VADAAGAHAVVAPKDRAVGLNATAAKVASGAADTVPYITVTNLARALREMQEAGVWVVGA 181 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + +++K + Q + +A +LGAEG GLR T++T +A + M G +++LNVS A+ + Sbjct: 182 AGEAEKSVYQVDQRGPLAWVLGAEGDGLRRLTRDTCDELAQIPMHGSVESLNVSVASGIC 241 Query: 273 LYITQNHFA 281 L+ + A Sbjct: 242 LFEARRQRA 250 >gi|196042135|ref|ZP_03109419.1| RNA methyltransferase, TrmH family [Bacillus cereus NVH0597-99] gi|196027071|gb|EDX65694.1| RNA methyltransferase, TrmH family [Bacillus cereus NVH0597-99] Length = 265 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSIQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + + ++ + +S Sbjct: 108 ESEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|189467068|ref|ZP_03015853.1| hypothetical protein BACINT_03451 [Bacteroides intestinalis DSM 17393] gi|189435332|gb|EDV04317.1| hypothetical protein BACINT_03451 [Bacteroides intestinalis DSM 17393] Length = 246 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I HQG+ + + L + L ++LD V D N GAI R+ Sbjct: 63 IT--RKNHQGVIAFISSVTYQKTEDLVPFLFEEGKNPLFVMLDGVTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I + S + +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 121 AAVDAVIIPAKGSVTVNADAMKTSAGALHVLPVCREQNLKTTLQYLKDSGFRIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE KG+ + + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRT 245 >gi|315652177|ref|ZP_07905174.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986] gi|315485572|gb|EFU75957.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986] Length = 260 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 100/259 (38%), Gaps = 10/259 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ K++ + +KS + + G+ +I ++ +++ + + Sbjct: 6 SNKKIKELLALVKKSSVRKKQNAYIVEGIRMFKEL---EPEEILEVFVSESF---ENENK 59 Query: 86 NLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT--LDAVRNSQLLMVLDHV 141 L +TV + D I + LA+ + L ++LD + Sbjct: 60 GLLKNIYPEYETVSDRIFDSISDTKTPQGVLAVAKRKEYTIDSILKEAGRPFSFLILDSL 119 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G ++R+A II + + + +S G++ +P+I + +L + K Sbjct: 120 QDPGNLGTLVRAAEGAGITCIIMNENTVDIYNPKVIRSTMGSIFRVPFIYVKDLKKVIDK 179 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + S + S + ++ IA ++G E G+ + + M G ++ Sbjct: 180 LQSKAVEIFASSLEGATEYDKPDYKKDIAFVIGNEAAGISKDILDIVEKKIKIPMLGEVE 239 Query: 262 ALNVSNAAAVALYITQNHF 280 +LN + A ++ +Y Sbjct: 240 SLNAAVAGSILMYEAARQR 258 >gi|75907658|ref|YP_321954.1| tRNA/rRNA methyltransferase SpoU [Anabaena variabilis ATCC 29413] gi|75701383|gb|ABA21059.1| tRNA/rRNA methyltransferase (SpoU) [Anabaena variabilis ATCC 29413] Length = 260 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 95/257 (36%), Gaps = 5/257 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWD 84 + K+++ + ++ + L G H + A ++ A W+ Sbjct: 6 QNSLVKQIRKLH-STKERHKQGLFLLEGTHLLEEACAMDYPLEVVCCTPEWEASHTALWE 64 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + V + + I Q + S + + +++ L+ + DP Sbjct: 65 EACNRCDRCEIVSEEVLQAIA---TTVQPDGVVATAKRSELQSQIPFTGVVLALETIQDP 121 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G I+R+A A G+ ++ ++ + ++++G + +L +Q Sbjct: 122 GNLGTIIRTAAAAGASGLWLSQDSVDLDNPKVLRASAGQWFRLATAVSEDLKATVQLCQQ 181 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G Q + +K + + ++LG EG GL P A + + +++LN Sbjct: 182 AGMQVVATLPTAKLTYWEIDWHKPSLILLGNEGAGLSPDLAAMADQEVKIPLSPGVESLN 241 Query: 265 VSNAAAVALYITQNHFA 281 V+ +A+ LY Q Sbjct: 242 VAITSALMLYEVQRQLN 258 >gi|325982012|ref|YP_004294414.1| RNA methyltransferase, TrmH family, group 3 [Nitrosomonas sp. AL212] gi|325531531|gb|ADZ26252.1| RNA methyltransferase, TrmH family, group 3 [Nitrosomonas sp. AL212] Length = 246 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 63/238 (26%), Positives = 108/238 (45%), Gaps = 9/238 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 F++G H V++ L I ++ + A+ V + + + G Sbjct: 6 FIFGFHAVTSRLRQNPNSIREIFIDATRTDQRAQELIKLAENKNIHVISCTGSKLTSMSG 65 Query: 107 KEAVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + LD + L+VLD + DPHN+GA LR A AF Sbjct: 66 NDR-HQGVVANIDSSSNDVGIDDILDGLTEPARLLVLDGIQDPHNLGACLRVADAFGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + + + K +SGA + +PYI ++NL L+++ G G + D+ L Sbjct: 125 VIAPKDRAVGLTPTVYKVSSGAADTVPYISVTNLARTLKQLKEQGIWIFGTAEDAAHDLT 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +A + G+E KGLR T+E + + M G I++LNV+ +A + L+ T Sbjct: 185 HFPISGSVAWVFGSEEKGLRRLTRENCDQLVRIPMQGDIESLNVAVSAGICLFETHRQ 242 >gi|322517687|ref|ZP_08070550.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] gi|322123675|gb|EFX95267.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] Length = 247 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 116/247 (46%), Gaps = 9/247 (3%) Query: 41 RHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 + T + +YGVH V+ +L K++ + + P + Sbjct: 2 KTTKESSLDIVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAEKKVSISWTPKK 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRS 153 T+ + G AVHQG L + + L+++LD +NDPHN G+ILR+ Sbjct: 62 TLSDMTG-GAVHQGFVLRVSEFAYSDFSVIMDKAEQEENPLILILDGLNDPHNFGSILRT 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 ADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKESGFWVFGTD 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV + Sbjct: 181 MDGTPSHKWNTA-GKLALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLM 239 Query: 274 YITQNHF 280 Y + Sbjct: 240 YEVYRNR 246 >gi|332526798|ref|ZP_08402899.1| RNA methyltransferase [Rubrivivax benzoatilyticus JA2] gi|332111200|gb|EGJ11232.1| RNA methyltransferase [Rubrivivax benzoatilyticus JA2] Length = 262 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 117/240 (48%), Gaps = 7/240 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V+ L + + ++ ++A R + + + + ++ G Sbjct: 23 VLFGFHAVTVRLKTAPQSVKEIHVDATRRDARMRQFVERAEAAGAKLVDSDGERLTQLAG 82 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS----QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A T + +LD ++ L++VLD V DPHN+GA LR A + Sbjct: 83 SGRHQGVVARVTPLATTHSLDDALDAAVGAPLVLVLDGVTDPHNLGACLRVADGAGACAV 142 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + K ++ +A +AK ASGA E +PY+ ++NL +L +M + IG S D+ K + Sbjct: 143 VAPKDHAVGLNATVAKVASGAAETVPYLMVTNLARSLGEMKERDIRVIGTSDDATKTIYD 202 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +AL+LGAEG G+R T++T + + M G +++LNVS AA + LY ++ Sbjct: 203 VDLRGPVALVLGAEGHGMRQLTRKTCDELVRIPMQGAVESLNVSVAAGICLYEALRQRSR 262 >gi|294777185|ref|ZP_06742642.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides vulgatus PC510] gi|294449054|gb|EFG17597.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides vulgatus PC510] Length = 255 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 13/245 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTID 102 +N ++GV V A+ R+I ++L K+ + L + PV+ VP + I+ Sbjct: 3 EKNEMIFGVRAVIEAIQAG-REIDKVLVKKDIQSELSKELFTCLKNTLIPVQRVPVERIN 61 Query: 103 KIVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 +I HQG+ + + L + L ++LD + D N GAI R+ Sbjct: 62 RIT--RKNHQGVVAFISSVTYQKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 D II + S S +A K+++GAL +P R NLT+ ++ + GF+ + + Sbjct: 120 CAGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLTNTIKYLKDCGFKIVAATEK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + D + +I+GAE G+ + + + G I++LNVS AA + +Y Sbjct: 180 GDYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYE 239 Query: 276 TQNHF 280 Sbjct: 240 AVKQR 244 >gi|150005407|ref|YP_001300151.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482] gi|254884288|ref|ZP_05256998.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA] gi|149933831|gb|ABR40529.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482] gi|254837081|gb|EET17390.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA] Length = 255 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 13/245 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTID 102 +N ++GV V A+ R+I ++L K+ + L + PV+ VP + I+ Sbjct: 3 EKNEMIFGVRAVIEAIQAG-REIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERIN 61 Query: 103 KIVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 +I HQG+ + + L + L ++LD + D N GAI R+ Sbjct: 62 RIT--RKNHQGVVAFISSVTYQKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 D II + S S +A K+++GAL +P R NLT+ ++ + GF+ + + Sbjct: 120 CAGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLTNTIKYLKDCGFKIVAATEK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + D + +I+GAE G+ + + + G I++LNVS AA + +Y Sbjct: 180 GDYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYE 239 Query: 276 TQNHF 280 Sbjct: 240 AVKQR 244 >gi|324328454|gb|ADY23714.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 254 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 1 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 42 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 97 EKEVALADGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 153 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 212 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248 >gi|225574359|ref|ZP_03782969.1| hypothetical protein RUMHYD_02426 [Blautia hydrogenotrophica DSM 10507] gi|225038415|gb|EEG48661.1| hypothetical protein RUMHYD_02426 [Blautia hydrogenotrophica DSM 10507] Length = 244 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 106/239 (44%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K+F L + V+ V + ++++ + Sbjct: 5 IEGRNAVLEAFRSGKCVDKLFVLDGCHDGPVNSIMREARKKDTLVQYVSKERLNQLS-QT 63 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ A T++ + +++LD + DPHN+GAI+R+A G Sbjct: 64 GTHQGVIAVVAAYEYSTVEDILQKAKDKGEDPFILLLDGIEDPHNLGAIIRTANLAGAHG 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +R + +A +A++++GAL + P +++NLT ++ + G + + + Sbjct: 124 VIIPRRRAVGLTATVARTSAGALNYTPVAKVANLTKTMEVLKKEGMWFVCA-DMDGQKMY 182 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q I +++G EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 183 QLNLRGPIGVVIGNEGEGVSRLVKEKCDFVASIPMKGDIDSLNASVAAGVLSYEVVRQR 241 >gi|118479709|ref|YP_896860.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|118418934|gb|ABK87353.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam] Length = 265 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 108 EKEVALADGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|319744132|gb|EFV96505.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC 13813] Length = 251 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 117/249 (46%), Gaps = 9/249 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 K + + + +YG+H V+ +L K++ + + P Sbjct: 4 KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVSISWTP 63 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAIL 151 +T+ + VHQG L+ + L + L+++LD + DPHN+G+IL Sbjct: 64 KKTLSDMT-NGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILILDGLTDPHNLGSIL 122 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A + GII K S + V++K+++GA+EH+P R++NL+ L + F G Sbjct: 123 RTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDTLKDKDFWIFG 182 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + K K+AL++G EGKG+ ++ M + M G +++LN S AAA+ Sbjct: 183 TDMNGTPSHKWNTK-GKLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAI 241 Query: 272 ALYITQNHF 280 +Y + Sbjct: 242 LMYEVFRNR 250 >gi|225377343|ref|ZP_03754564.1| hypothetical protein ROSEINA2194_02990 [Roseburia inulinivorans DSM 16841] gi|225210874|gb|EEG93228.1| hypothetical protein ROSEINA2194_02990 [Roseburia inulinivorans DSM 16841] Length = 246 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 109/238 (45%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K+F L ++ R H + V + +D++ + Sbjct: 8 IEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVRTIVREARKHDTIINFVDKERLDQLSETK 67 Query: 109 AVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A+ A + D ++N + +LD++ DPHN+GAI+R+A G+ Sbjct: 68 KHQGVIAVAAAYEYAEVEDILKNAEEKGEPPFIFILDNIEDPHNLGAIIRTANLAGAHGV 127 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I KR + +A +AK+++GA+ + P +++NLT A++++ G + + + Sbjct: 128 IIPKRRAVGLTATVAKTSAGAINYTPVAKVTNLTAAIKELKEKGLWFVCA-DMGGTEMYK 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 187 LDLKGPIGLVIGNEGEGVSKLVKENCDFIASIPMKGDIDSLNASVAAGVLAYEIVRQR 244 >gi|46200014|ref|YP_005681.1| 23S rRNA methyltransferase [Thermus thermophilus HB27] gi|46197641|gb|AAS82054.1| 23S rRNA methyltransferase [Thermus thermophilus HB27] Length = 260 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 93/258 (36%), Gaps = 7/258 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + K + + ++ + + + G V AL LL K Sbjct: 5 SPQNPRVKALAALKER-KERERTGRFLVEGRREVERALEAGLSLETLLLGPKAR----PE 59 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 D L V + + + ++ +E Q L + P S + + L++VL + Sbjct: 60 DRALAGGAEVLELSERALARVSARENPAQVLGVFRLPRRSLAGVTLGAAPLVLVLLGLEK 119 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GAILR+A D ++ + V+ S + +A + + Sbjct: 120 PGNLGAILRAADGAGADLVLVAEGVDLFSPQVIRNSTGAVF--ALPVYPVAEEEAARFLE 177 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + ++ + +A +LGAE KGL + A + M G +L Sbjct: 178 EQNLPLVAATPEGERLYWEGDYRGGVAFLLGAEDKGLPEAWKRRAQVRVRIPMRGRADSL 237 Query: 264 NVSNAAAVALYITQNHFA 281 NV+ AA+ LY + Sbjct: 238 NVAVTAALLLYEALRQRS 255 >gi|25010279|ref|NP_734674.1| hypothetical protein gbs0204 [Streptococcus agalactiae NEM316] gi|23094631|emb|CAD45849.1| Unknown [Streptococcus agalactiae NEM316] Length = 249 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 116/249 (46%), Gaps = 9/249 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 K + + + +YG+H V+ +L K++ + + P Sbjct: 2 KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVSISWTP 61 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAIL 151 + + + VHQG L+ + L + L+++LD + DPHN+G+IL Sbjct: 62 KKILSDMT-NGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILILDGLTDPHNLGSIL 120 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A + GII K S + V++K+++GA+EH+P R++NL+ L + F G Sbjct: 121 RTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDTLKDKDFWIFG 180 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + K K+AL++G EGKG+ ++ M + M G +++LN S AAA+ Sbjct: 181 TDMNGTPSHKWNTK-GKLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAI 239 Query: 272 ALYITQNHF 280 +Y + Sbjct: 240 LMYEVFRNR 248 >gi|77409659|ref|ZP_00786329.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae COH1] gi|77413808|ref|ZP_00789988.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae 515] gi|77160170|gb|EAO71301.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae 515] gi|77171728|gb|EAO74927.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae COH1] Length = 251 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 116/249 (46%), Gaps = 9/249 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 K + + + +YG+H V+ +L K++ + + P Sbjct: 4 KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVSISWTP 63 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAIL 151 + + + VHQG L+ + L + L+++LD + DPHN+G+IL Sbjct: 64 KKILSDMT-NGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILILDGLTDPHNLGSIL 122 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A + GII K S + V++K+++GA+EH+P R++NL+ L + F G Sbjct: 123 RTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDTLKDKDFWIFG 182 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + K K+AL++G EGKG+ ++ M + M G +++LN S AAA+ Sbjct: 183 TDMNGTPSHKWNTK-GKLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAI 241 Query: 272 ALYITQNHF 280 +Y + Sbjct: 242 LMYEVFRNR 250 >gi|46906474|ref|YP_012863.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str. F2365] gi|46879738|gb|AAT03040.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes serotype 4b str. F2365] Length = 251 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 13/248 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQ 99 + E ++ G + V L + R I ++ + + + V+ VP Q Sbjct: 2 EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152 I+K+V HQG+A + A LD ++LD + DPHN+G+I+R Sbjct: 61 KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A + GII KR S + +AK+++GA+E++P +R++N+ ++++ G G Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +A+++G+EG G+ +E + HL M G + +LN S AA++ Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSCLVREKCDFLVHLPMRGKVTSLNASVAASLL 238 Query: 273 LYITQNHF 280 LY Sbjct: 239 LYEVYRKR 246 >gi|172058194|ref|YP_001814654.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sibiricum 255-15] gi|171990715|gb|ACB61637.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sibiricum 255-15] Length = 251 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 100/277 (36%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS K+E + K + Q + + G H V A Sbjct: 1 MKHISSPKNEIVKQWKKLLTK-------------------KGRLQTKRFLIEGEHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I +L+ ++ W N + + E A+ Sbjct: 42 VRAG--IIKELIVREDVQVPGSWKKNAADLITI---DESVAKVLSETETTQGIFAVCEMK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + L+ R ++LD + DP N+G ++R+A A DG+I ++ + ++ Sbjct: 97 QQTERLERGRY----LLLDRLQDPGNVGTMIRTADAAGFDGVIIGHGTVDVYNSKVLRAT 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P I +S F ++ + E I LI+G E +G+ Sbjct: 153 QGSIFHLPVIMMSLEEAIQDLHELGVFILGTALRGAQPYTDVENL-GAIGLIIGNEAQGV 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P+ + A++ + G ++LN + AA + LY Sbjct: 212 APELLDQCDGRAYIPIRGKAESLNAAVAAGILLYHFA 248 >gi|229105189|ref|ZP_04235838.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28] gi|228678115|gb|EEL32343.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28] Length = 265 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKQGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKAG--IVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENSVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGSGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|116495156|ref|YP_806890.1| rRNA methylase [Lactobacillus casei ATCC 334] gi|116105306|gb|ABJ70448.1| rRNA methylase [Lactobacillus casei ATCC 334] Length = 253 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 98/276 (35%), Gaps = 26/276 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS K+++I + K +H L G H V A Sbjct: 1 MEYISSPKNDRIKTAKKLTVK-------------------KHQKDAGRYLLEGRHLVQEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + A + D L + T +++ + + QG+ Sbjct: 42 LASGQTPYDIY-----ATEKYVEDRALKPFYEKITQISESVSEHLSDTQTPQGIFAVMPR 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + LL+ D + DP N+G ++R+A A ++ + + + ++ Sbjct: 97 RAEQLPEPLSGQFLLL--DAIQDPGNVGTLVRTADAAGIQTVVFGNGTADAFGPKVLRAM 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+ + + ++ K +++ ALI+G EG G+ Sbjct: 155 QGSQFHVRIVSAKLMPIIKALHRGGIPVYGSELNEKAKSYHSIQPSERFALIVGNEGNGM 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P + + ++ + G ++LNV+ AAAV ++ Sbjct: 215 DPVLLQNTDTNLYIPIRGKAESLNVAVAAAVMMFHL 250 >gi|226939564|ref|YP_002794637.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Laribacter hongkongensis HLHK9] gi|226714490|gb|ACO73628.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Laribacter hongkongensis HLHK9] Length = 252 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 7/237 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G H V+A L + + ++ ++ + V + + +D + G Sbjct: 6 LIHGFHAVNARLFQSPKSLIEIYITRGREDRRMQEALAKAADEGIRVIPLDNERLDAMTG 65 Query: 107 KEAVH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A + LD + L++LD + DPHN+GA LR A A + Sbjct: 66 HARHQGIAAVIDASHRIVNVDDVLDTLTTPPFLLILDGITDPHNLGACLRVADAMGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + K S +A ++K A GA E +PYI+++NL L+ + G G D + L Sbjct: 126 LAPKDRSAGLNATVSKVACGAAETVPYIQVTNLARTLRDLKDRGIWIAGTDMDGQSDLYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +A ++G+EG+G+R T+E + + M G +++LNVS A + L T+ Sbjct: 186 FEAPESLAWVMGSEGEGMRRLTREHCDLLVSIPMFGTVESLNVSVATGMVLAETRRQ 242 >gi|322374192|ref|ZP_08048725.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. C150] gi|321276897|gb|EFX53969.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. C150] Length = 247 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 117/247 (47%), Gaps = 9/247 (3%) Query: 41 RHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 + T + +YGVH V+ +L K++ + + P + Sbjct: 2 KTTKESSLDIVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAEKKVSISWTPKK 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRS 153 T+ + G AVHQG L + L + L+++LD +NDPHN G+ILR+ Sbjct: 62 TLSDMTG-GAVHQGFVLRVSEFAYSELSDIMDKVEQEENPLILILDGLNDPHNFGSILRT 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 ADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWIFGTD 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + ++ALI+G EGKG+ ++ M + M G +++LN S AAAV + Sbjct: 181 MDGTPSHKWNTA-GRLALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLM 239 Query: 274 YITQNHF 280 Y + Sbjct: 240 YEVYRNR 246 >gi|224535475|ref|ZP_03676014.1| hypothetical protein BACCELL_00338 [Bacteroides cellulosilyticus DSM 14838] gi|224522941|gb|EEF92046.1| hypothetical protein BACCELL_00338 [Bacteroides cellulosilyticus DSM 14838] Length = 246 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I HQG+ + + L + L ++LD V D N GAI R+ Sbjct: 63 IT--RKNHQGVIAFISSVTYQKTEDLVPFLFEEGKNPLFVMLDGVTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I + S + +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 121 AAVDAVIIPAKGSVTVNADAMKTSAGALHVLPVCREQNLKVTLQYLKDSGFRIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE KG+ + + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRT 245 >gi|307709243|ref|ZP_07645701.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564] gi|307619826|gb|EFN98944.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564] Length = 242 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKKLATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDQILVKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMDGHVQSLNASVAAAILMYEVFRNR 241 >gi|171778431|ref|ZP_02919589.1| hypothetical protein STRINF_00440 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282832|gb|EDT48256.1| hypothetical protein STRINF_00440 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 249 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 118/242 (48%), Gaps = 9/242 (3%) Query: 45 QPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 +N +YGVH V+ AL K++ + + P +T+ Sbjct: 7 NDQNDIVYGVHAVTEALQANTGNKLYIQDDLRGKNVDKIKMLATEKKVSISWTPKKTLSD 66 Query: 104 IVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + AVHQG L + LD + L+++LD +NDPHN G+ILR+A A Sbjct: 67 MT-NGAVHQGFVLRVSEFAYAELDSILEKAVQEENPLILILDELNDPHNFGSILRTADAT 125 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + G+I K + + V+AK+++GA+EH+P R++NL+ L K+ GF G + Sbjct: 126 NVTGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEQGFWVFGTDMNGT 185 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + K+ALI+G EGKG+ P ++ M + M G +++LN S AAAV +Y Sbjct: 186 PSHKWNTA-GKLALIIGNEGKGISPNIKKQVDEMITIPMNGHVQSLNASVAAAVLMYEVF 244 Query: 278 NH 279 H Sbjct: 245 RH 246 >gi|104783862|ref|YP_610360.1| RNA methyltransferase [Pseudomonas entomophila L48] gi|95112849|emb|CAK17577.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas entomophila L48] Length = 247 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 8/240 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ Q+ ++ R+ L V+ + + E Sbjct: 7 IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRIQALLALAAENRVQVGQAERRELDAWVEG 66 Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ E +P L+ L++VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGATAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + K S S +AV+ K A GA E IP + ++NL+ L+K+ G +G + ++++ + Q Sbjct: 127 VIPKDKSASLTAVVRKVACGAAEVIPLVAVTNLSRTLEKLQQRGLWVVGTAGEAEQEIYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ K Sbjct: 187 QDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQRQK 246 >gi|266624299|ref|ZP_06117234.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM 13479] gi|288863863|gb|EFC96161.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM 13479] Length = 259 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 97/259 (37%), Gaps = 7/259 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + K++ + +K++ + G+ P +I L +++ L + Sbjct: 4 SSANGKVKQVMNLAKKAKARKETGLFVAEGLRMFKEI---PRDRIDSLFVSESFL-KNPE 59 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD--AVRNSQLLMVLDHV 141 L P + V + QG+ D LLM+LD + Sbjct: 60 GRKLIGPLAFEAVADDVFKTMSD-TTTPQGVLALVKQYAYTIDDILDRPGPALLMILDTI 118 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G ILR+ G+I + + + +S G++ +P++ + L L Sbjct: 119 QDPGNLGTILRAGEGAGITGVIMNDTTADIYNPKVIRSTMGSVCRVPFVYTAALPQTLAN 178 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G + + + E+E ++G E GL +T A + + M G ++ Sbjct: 179 IKKRGVRLYAAHLEGRNNYEKEDYTVDTGFLIGNEANGLSSETASMADAYVKIPMMGKVE 238 Query: 262 ALNVSNAAAVALYITQNHF 280 +LN + AA+V ++ Sbjct: 239 SLNAAVAASVLMFEAARQR 257 >gi|22536393|ref|NP_687244.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R] gi|76787268|ref|YP_328940.1| RNA methyltransferase [Streptococcus agalactiae A909] gi|76799582|ref|ZP_00781707.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae 18RS21] gi|77405353|ref|ZP_00782448.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae H36B] gi|77410962|ref|ZP_00787318.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae CJB111] gi|22533220|gb|AAM99116.1|AE014201_14 RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae 2603V/R] gi|76562325|gb|ABA44909.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909] gi|76585065|gb|EAO61698.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae 18RS21] gi|77163017|gb|EAO73972.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae CJB111] gi|77176031|gb|EAO78805.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae H36B] Length = 251 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 117/249 (46%), Gaps = 9/249 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 K + + + +YG+H V+ +L K++ + + P Sbjct: 4 KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVSISWTP 63 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAIL 151 +T+ + VHQG L+ + L + L+++LD + DPHN+G+IL Sbjct: 64 KKTLSDMT-NGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILILDGLTDPHNLGSIL 122 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A + GII K S + V++K+++GA+EH+P R++NL+ L + F G Sbjct: 123 RTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDTLKDKEFWIFG 182 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + K K+AL++G EGKG+ ++ M + M G +++LN S AAA+ Sbjct: 183 TDMNGTPSHKWNTK-GKLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAI 241 Query: 272 ALYITQNHF 280 +Y + Sbjct: 242 LMYEVFRNR 250 >gi|86357288|ref|YP_469180.1| tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42] gi|86281390|gb|ABC90453.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42] Length = 296 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 144/267 (53%), Positives = 186/267 (69%), Gaps = 14/267 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQ----SFNQKSRHTSQPE---------NLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + + + R + ++LYG+HTV AA Sbjct: 16 SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRRRGAEDWKPPALAPDQVYLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP RK +L T+NALARL+ D P + V P IDK++G EA+HQG+ LET P Sbjct: 76 LDNPERKKIKLFTTQNALARLEIDVETL-GIPFEIVSPHEIDKVLGPEAIHQGVMLETRP 134 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKSA Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALE IPYI+I+NL DAL ++H GF TIGL S+ PLE DK+AL+LG+EGKGL Sbjct: 195 SGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKVALVLGSEGKGL 254 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267 R KT+ET T++A L MPG IK+LNVSN Sbjct: 255 RQKTRETVTALARLDMPGAIKSLNVSN 281 >gi|258614352|ref|ZP_05712122.1| RNA methyltransferase [Enterococcus faecium DO] Length = 254 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 102/276 (36%), Gaps = 24/276 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I L K ++ + L G H + A Sbjct: 1 MKEIQSAKNPRIKEL-------------------KKLHKKKYREEKAEYLLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ + + V + + + LA+ T Sbjct: 42 -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQGILAVMTL- 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + D S ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 100 ---TSEDTPDFSGGWLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P ++ ++ L++ K + A+I+G EG+G+ Sbjct: 157 QGSNYHLPVLQKDLADVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGV 216 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + ++ M G ++LNV AA + LY Sbjct: 217 SQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252 >gi|153808238|ref|ZP_01960906.1| hypothetical protein BACCAC_02526 [Bacteroides caccae ATCC 43185] gi|149129141|gb|EDM20357.1| hypothetical protein BACCAC_02526 [Bacteroides caccae ATCC 43185] Length = 247 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGLLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I HQG+ + + L + ++LD V D N GAI R+ Sbjct: 63 IT--RKNHQGVVAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I R S S +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 121 AAVDAVIIPARGSASVNADAVKTSAGALHTLPVCREQNLRATLQYLKDSGFRIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE G+ + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPLCIIMGAEDTGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRN 245 >gi|269137719|ref|YP_003294419.1| 23S rRNA (guanosine-2-O-)-methyltransferase [Edwardsiella tarda EIB202] gi|267983379|gb|ACY83208.1| 23S rRNA (guanosine-2-O-)-methyltransferase [Edwardsiella tarda EIB202] gi|304557775|gb|ADM40439.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Edwardsiella tarda FL6-60] Length = 247 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 104/243 (42%), Gaps = 9/243 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKI 104 + +YG+H V A L ++ + K R V+ Q +D+ Sbjct: 2 SEIIYGIHAVKALLEQDPQRFLDVFVMKGREDRRLLPLLQQLEECGIRVQVAQRQWLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V +A D + L++LD V DPHN+GA LRSA A Sbjct: 62 VEGAVHQGIVARVKPGRQYQENDLPDLLAGLDHPPFLLILDGVTDPHNLGACLRSADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D +I + S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 122 VDAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQQESIWIVGTAGEADH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 SLYQSRMTGAMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 241 Query: 279 HFA 281 + Sbjct: 242 QRS 244 >gi|298491203|ref|YP_003721380.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708] gi|298233121|gb|ADI64257.1| RNA methyltransferase, TrmH family, group 3 ['Nostoc azollae' 0708] Length = 323 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 77/298 (25%), Positives = 137/298 (45%), Gaps = 24/298 (8%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-----------PENLFLYG 53 K+ + I +K H+ + +SF+ K R + Q E+ +YG Sbjct: 13 ETKRVQPIK-IKGKRVIANPTRHQTKGESKSFSSKPRPSHQSSLPTPAIKSPEESDLIYG 71 Query: 54 VHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 H V +AL N R + +L + + + V P+ +D+I A Sbjct: 72 RHPVLSALEN-QRGLNRLWITARLRYDPRFHHLILQAKDNGTVIDEVEPKRLDQITD-GA 129 Query: 110 VHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+A + AP L+ + +++V D + DPHN+GAI+R+A A G++ Sbjct: 130 NHQGIAAQIAPYAYMELEDLITQAKSVTDPVIVVADGITDPHNLGAIIRTAEAIGSQGLV 189 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +R + ++ + K A+GALE+ P R+ NL+ AL+++ G+ G ++ +P+ Sbjct: 190 IPQRRASGITSTVVKVAAGALENFPVARVINLSRALEQLKEAGYWIYGTAAAGSEPIHTV 249 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + L++G+EG GL TQ + + + + G +LN S AA +ALY + Sbjct: 250 KFSGSTVLVIGSEGDGLSMLTQRSCDILVSIPLQGKTPSLNASVAAGMALYEIYRQRS 307 >gi|52078591|ref|YP_077382.1| putative tRNA/rRNA methyltransferase YacO [Bacillus licheniformis ATCC 14580] gi|52783952|ref|YP_089781.1| YacO [Bacillus licheniformis ATCC 14580] gi|52001802|gb|AAU21744.1| putative tRNA/rRNA methyltransferase YacO [Bacillus licheniformis ATCC 14580] gi|52346454|gb|AAU39088.1| YacO [Bacillus licheniformis ATCC 14580] Length = 249 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 123/246 (50%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102 ++ ++ G + V L + R++++L +N + D + + VP + +D Sbjct: 3 QQHDYVIGKNAVIETLKSG-RELYKLWMAENTVKGQAQQVVDLAAKNGVTIHYVPRKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V HQG+ + A LD ++VLD + DPHN+G+I+R+A Sbjct: 62 QMVS--GQHQGVVAQVAAYEYAELDDLFQKAEDRNEQPFILVLDEIEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ KR + + +AK+++GA+EHIP ++++NL+ L++M G +G + Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTNLSRTLEEMKGRGIWVVGTDAS 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ N +AL++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 180 GQQDYRSLDGNMPLALVIGSEGKGMGRLVKEKCDFLIRLPMAGKVTSLNASVAAGLLMYE 239 Query: 276 TQNHFA 281 + Sbjct: 240 VYRKRS 245 >gi|241765241|ref|ZP_04763223.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax delafieldii 2AN] gi|241365073|gb|EER59958.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax delafieldii 2AN] Length = 248 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 107/243 (44%), Gaps = 11/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V L + I ++ ++A R D + I K+ G Sbjct: 6 VLFGFHAVGVRLKTAPQSIIEIYYEATRRDARMRQFLDRAREAGARLIEADSVRIAKLAG 65 Query: 107 KEAVHQGLALETAPLLSPTLDA--------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A +LD LL+VLD V DPHN+GA LR A Sbjct: 66 SHGHQGVAARVEPVAQVTSLDELLENLEAAGIEQPLLLVLDGVTDPHNLGACLRVADGAG 125 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG S D+ K Sbjct: 126 AHAVIAPKDHAVGINATVAKVASGAAETMPYFMVTNLARTLGELKERNIWCIGTSDDAPK 185 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +AL+LGAEG G+R T++T + + M G +++LNVS A+ V LY Sbjct: 186 TIYQVDLKGPVALVLGAEGDGMRQLTRKTCDELVSIPMKGAVESLNVSVASGVCLYEALR 245 Query: 279 HFA 281 + Sbjct: 246 QRS 248 >gi|331090785|ref|ZP_08339632.1| RNA methyltransferase [Lachnospiraceae bacterium 2_1_46FAA] gi|330399893|gb|EGG79552.1| RNA methyltransferase [Lachnospiraceae bacterium 2_1_46FAA] Length = 246 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 106/243 (43%), Gaps = 9/243 (3%) Query: 46 PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 E+L + G + V A + K+F L ++ R H ++ V + +D+ Sbjct: 3 EESLIIEGRNAVIEAFRSGKTIDKVFVLDGCQDGPVRTIVREAKKHDTILQFVTKERLDQ 62 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + +A A + D + +LD++ DPHN+GAI+R+A Sbjct: 63 LSETGKHQGVVAHAAAYEYAEVEDILALAKEKGEDPFIFILDNIEDPHNLGAIIRTANLA 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR + +A +AK+++GAL + P +++NL ++++ G + Sbjct: 123 GAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLVKTMEELKEKGLWFVCA-DMGG 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + I L++G EG G+ +E +A + M G I +LN S AA V Y Sbjct: 182 ETMYRLNLTGPIGLVIGNEGTGVGRLVKEECDFVASIPMKGDIDSLNASVAAGVLAYEIV 241 Query: 278 NHF 280 Sbjct: 242 RQR 244 >gi|300704216|ref|YP_003745819.1| tRNA/rRNA methyltransferase, spou like [Ralstonia solanacearum CFBP2957] gi|299071880|emb|CBJ43209.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia solanacearum CFBP2957] Length = 263 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 102/259 (39%), Gaps = 8/259 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLD 82 R++ +K +++ + ++ + L G+H V+A L+ L++ ++ A + Sbjct: 6 SRDNAVFKHLKALSGSTQQRRRAGQSVLDGIHLVAAYLDAGHTPTQCLVSERHLAHPEVA 65 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 P V + ++ V G+ L R ++LD + Sbjct: 66 PLLARVDPQHVILLADSLFAQLT---TVVNGIDLMALIDTPEGHLPHRIEHDCVILDGIQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILR A A + T + + SA ++A GA H+ + ++ Sbjct: 123 DAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNIVEHCTFESMHARL 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 H + SS ++ + + + G EG G+ + T+ + PG +++ Sbjct: 183 HVPL---LATSSHARHAVFDVPLGKPVGWVFGNEGAGVSEQWLS-VTTPISIPQPGGMES 238 Query: 263 LNVSNAAAVALYITQNHFA 281 LNV+ AAA+ L+ Sbjct: 239 LNVAAAAAICLFEAVRQRT 257 >gi|294340709|emb|CAZ89101.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Thiomonas sp. 3As] Length = 242 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 109/237 (45%), Gaps = 7/237 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 LYG H V A L + + ++A + +KT+ + + + G Sbjct: 4 LYGFHAVGARLRAAPASVHAVYVDASRRDARMQQFLRKVEASGVELKTLSAERLTALAGT 63 Query: 108 EAVH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + Q L T L LDAV + L++ LD V DPHN+GAILR+A A +I Sbjct: 64 DRHQGVVAQVDDLPTVHDLHAVLDAVEGAPLVLALDGVTDPHNLGAILRTADAAGVHLVI 123 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + + +A+ ASGA E +PY+ ++NL +L ++ G +G + + Sbjct: 124 APKDRAVGLNPTVARVASGAAETVPYLMVTNLVRSLGELQDRGLWVMGTDEAATDDVYAA 183 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L++GAEG G+R +ET + + M G +++LNVS AA V LY Sbjct: 184 NWTQPAVLVMGAEGAGMRRLVRETCDQLLQIPMLGAVESLNVSVAAGVCLYEAVRQR 240 >gi|191638665|ref|YP_001987831.1| 23S rRNA methyltransferase [Lactobacillus casei BL23] gi|227534828|ref|ZP_03964877.1| 23S rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239632038|ref|ZP_04675069.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066720|ref|YP_003788743.1| rRNA methylase [Lactobacillus casei str. Zhang] gi|190712967|emb|CAQ66973.1| 23S rRNA methyltransferase [Lactobacillus casei BL23] gi|227187584|gb|EEI67651.1| 23S rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526503|gb|EEQ65504.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439127|gb|ADK18893.1| rRNA methylase [Lactobacillus casei str. Zhang] gi|327382706|gb|AEA54182.1| RNA methyltransferase, TrmH family [Lactobacillus casei LC2W] gi|327385893|gb|AEA57367.1| RNA methyltransferase, TrmH family [Lactobacillus casei BD-II] Length = 253 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 97/277 (35%), Gaps = 28/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS K+++I + K +H L G H V A Sbjct: 1 MEYISSPKNDRIKTAKKLTVK-------------------KHQKDAGRYLLEGRHLVQEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPF-PVKTVPPQTIDKIVGKEAVHQGLALETA 119 L + A + D L + + + + + + QG+ Sbjct: 42 LASGQTPYDIY-----ATEKYVEDRALKPFYDKITQISESVSEHLSDTQ-TPQGIFAVMP 95 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + + LL+ D + DP N+G ++R+A A ++ + + + ++ Sbjct: 96 RRAEQLPEPLSGQFLLL--DAIQDPGNVGTLVRTADAAGIQTVVFGNGTADAFGPKVLRA 153 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+ + + ++ K +++ ALI+G EG G Sbjct: 154 MQGSQFHVRIVSAKLMPIIKALHRGGIPVYGSELNEKAKSYHSIQPSERFALIVGNEGNG 213 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + P + + ++ + G ++LNV+ AAAV ++ Sbjct: 214 MDPVLLQNTDTNLYIPIRGKAESLNVAVAAAVMMFHL 250 >gi|257883080|ref|ZP_05662733.1| RNA methyltransferase [Enterococcus faecium 1,231,502] gi|257818738|gb|EEV46066.1| RNA methyltransferase [Enterococcus faecium 1,231,502] Length = 254 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 104/276 (37%), Gaps = 24/276 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I L K ++ + L G H + A Sbjct: 1 MKEIQSVKNPRIKEL-------------------KKLHKKKYREEKAEYLLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ + + V + + + LA+ T Sbjct: 42 -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQGILAVMTL- 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + D S ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 100 ---TSEDTPDFSGGWLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P ++ ++ L++ K + A+I+G EG+G+ Sbjct: 157 QGSNYHLPVLQKDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGV 216 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +A ++ M G ++LNV AA + LY Sbjct: 217 SQEILSSADQNVYIPMKGNAESLNVGVAAGIVLYHF 252 >gi|71282118|ref|YP_271263.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Colwellia psychrerythraea 34H] gi|71147858|gb|AAZ28331.1| RNA methyltransferase, TrmH family, group 3 [Colwellia psychrerythraea 34H] Length = 251 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 108/248 (43%), Gaps = 12/248 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 ++G+H V+A +N + ++ ++ + + + + + +D Sbjct: 3 KNEELVFGIHAVNALINAAPERFIEIWLLKGREDDRIMPIINLSRKYGIGTQLASRKALD 62 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNS---------QLLMVLDHVNDPHNIGAILRS 153 + E +A D ++LD V DPHN+GA LR+ Sbjct: 63 EKSEGEQHQGVIARVRPGKSYTENDIDDIILAAEKKSIAPFFLILDGVTDPHNLGACLRN 122 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A II K + + + K A GA+E +P ++++NL+ ++++ G +G + Sbjct: 123 ADAAGVQAIIVPKDNAAQITPTVRKVAVGAVESVPLVQVTNLSRTMKQLQKQGVWIVGTA 182 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ L + +AL++GAEGKG+R T+E + L M G + +LNVS A + L Sbjct: 183 GETDTCLYDVKLSGPMALVMGAEGKGMRRLTRENCDQLVKLPMAGTVSSLNVSVATGICL 242 Query: 274 YITQNHFA 281 + + Sbjct: 243 FEMVRQRS 250 >gi|325679612|ref|ZP_08159187.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 8] gi|324108642|gb|EGC02883.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 8] Length = 257 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 13/260 (5%) Query: 33 MQSFNQKSRHTSQP-ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL--ARLDWDANLPH 89 M+ N+K+++T E + G + V AL I + +A L Sbjct: 1 MRDKNEKTKNTENAAEEELILGRNPVIEALKADK-LIDIIFVNPDAKGSISLILKLARER 59 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVN 142 PVK V Q +D + A HQG+ A +D + +++ D + Sbjct: 60 DIPVKQVREQKLDFMA-HGAAHQGVIAIGACAEYVEVDDILKIAADKGEDPFIIICDEIE 118 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DPHN+GAI+R+A A GII KR S S + + K+++GA +P R++NL A+ + Sbjct: 119 DPHNLGAIIRTAEAAGAHGIIIPKRRSASLNHTVFKTSAGAASWLPVARVANLPAAVDDL 178 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G G + ++ + L++G+EG G+ +E + L M G I + Sbjct: 179 KKQGIWIYGTDGAGENYSGVDM-RGPVGLVVGSEGFGMGRLMKEKCDFLLSLPMAGKITS 237 Query: 263 LNVSNAAAVALYITQNHFAK 282 LN S AA + +Y AK Sbjct: 238 LNASVAAGIFMYEVVRQRAK 257 >gi|110803075|ref|YP_699682.1| RNA methyltransferase [Clostridium perfringens SM101] gi|168206818|ref|ZP_02632823.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens E str. JGS1987] gi|168217917|ref|ZP_02643542.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens NCTC 8239] gi|169344116|ref|ZP_02865099.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens C str. JGS1495] gi|110683576|gb|ABG86946.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens SM101] gi|169297727|gb|EDS79826.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens C str. JGS1495] gi|170661756|gb|EDT14439.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens E str. JGS1987] gi|182380031|gb|EDT77510.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens NCTC 8239] Length = 289 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 58/290 (20%), Positives = 119/290 (41%), Gaps = 12/290 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M K + K + + R R+ K ++ + + + G + V Sbjct: 1 MTKSENKYKQLTRKQKYALEREQRA--REEKYARNTRTFAEEEVKVREDLVEGRNAVIEL 58 Query: 61 LNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + +IF VK V + +D + +A HQG+ + Sbjct: 59 LKSDKTIEQIFIANGKMEGSINKILGLAKEKKIVVKEVDRKKLDLMSETKA-HQGVIAQI 117 Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 P T++ + +++LD + DPHN+G+I+R+A GII KR + Sbjct: 118 TPFKYSTVEDILDLAKSKNEDPFIVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVG 177 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + + K++ GA+EH+ +++N+ +A++++ + G ++ + + Sbjct: 178 VTGTVYKASVGAIEHMKIAKVTNINNAIEELKANNVWIYGADIAGEEYSYETNFKGACGI 237 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 I+G+EG+G+ T++ + + M G I +LN S A + +Y Sbjct: 238 IIGSEGRGMSNLTKKKCDKLVKIPMVGKINSLNASVAGGIMMYEVLKSRI 287 >gi|293553832|ref|ZP_06674447.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039] gi|291602038|gb|EFF32275.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039] Length = 254 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 102/276 (36%), Gaps = 24/276 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I L K ++ + L G H + A Sbjct: 1 MKEIQSAKNPRIKEL-------------------KKLHKKKYREEKAEYLLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ + + V + + + LA+ T Sbjct: 42 -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQGILAVMTL- 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + D S ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 100 ---TSEDTPDFSGGWLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P ++ ++ L++ K + A+I+G EG+G+ Sbjct: 157 QGSNYHLPVLQKDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGV 216 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + ++ M G ++LNV AA + LY Sbjct: 217 SQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252 >gi|90581367|ref|ZP_01237163.1| putative RNA methyltransferase, TrmH family protein [Vibrio angustum S14] gi|90437477|gb|EAS62672.1| putative RNA methyltransferase, TrmH family protein [Vibrio angustum S14] Length = 244 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 109/239 (45%), Gaps = 8/239 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 ++G+H V A L + + ++ K RL ++ + +D V Sbjct: 6 IFGIHAVKAVLASDPVRFIEVFVLKGREDDRLLPLVTELQSLGITIQEAGRKALDDKVKG 65 Query: 108 EAVHQGLALETAPLLSP-----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A L + + LL++LD V DPHN+GA LR+A A + Sbjct: 66 ASHQGIVARVRPGKQYNENDLDDLLVGKENPLLLILDGVTDPHNLGACLRNADAAGAVAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A +K A GA E +P +R++NL ++ + G +G + ++ + Q Sbjct: 126 IVPKDRSAQLNATASKVACGAAEIMPLVRVTNLARTMRALQDKGVWIVGTAGEATHDIYQ 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +A+++GAEG+G+R T+ET + + M G + +LNVS A + L+ + Sbjct: 186 SKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQRS 244 >gi|228917200|ref|ZP_04080757.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842401|gb|EEM87492.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 265 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 108 ESEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|239626147|ref|ZP_04669178.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520377|gb|EEQ60243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 264 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 100/258 (38%), Gaps = 9/258 (3%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 ++ K++ + +++ + G+ S K ++L A + Sbjct: 7 NKQVKRVVNLRNRAKARREEGVYVAEGLRMCREL----SIKDTEILYVTEGFAGDRENRK 62 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL----LMVLDHVN 142 F + V + + + QG+ D ++ + +MVL+ + Sbjct: 63 WMDGFRFEIVTDVVMKVMADTQ-TPQGVLAVARQKTYTLEDILKAPRNGKLAIMVLETIQ 121 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+A GI+ + + + + +S G++ +P++ + ++ A Q M Sbjct: 122 DPGNLGTIVRAAEGAGITGIVMNRETTDIYNPKVIRSTMGSICRMPFVCVDDIRQACQTM 181 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G + +QE D + ++G E GL T A + M G +++ Sbjct: 182 KDSGVRLFAAHLKGMNNYDQEDYTDNVGFLIGNEAGGLTDGTAAMADCYVKIPMAGRVES 241 Query: 263 LNVSNAAAVALYITQNHF 280 LN + AA+V ++ Sbjct: 242 LNAAVAASVLMFEAARQR 259 >gi|52140943|ref|YP_085884.1| 23S rRNA methyltransferase [Bacillus cereus E33L] gi|51974412|gb|AAU15962.1| 23S rRNA methyltransferase [Bacillus cereus E33L] Length = 254 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 1 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 42 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + + ++ + +S Sbjct: 97 EKEVALADGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 153 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGSGV 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 212 RQEVLAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248 >gi|156972464|ref|YP_001443371.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio harveyi ATCC BAA-1116] gi|156524058|gb|ABU69144.1| hypothetical protein VIBHAR_00084 [Vibrio harveyi ATCC BAA-1116] Length = 247 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 112/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGLHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A HQG+ + S LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-NGANHQGIIARVKAAKQLNENDIDGILAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S +A ++K A GA E +P IR++NL ++ + G +G + ++ Sbjct: 122 AAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HFA 281 Sbjct: 242 QRI 244 >gi|121602409|ref|YP_988872.1| RNA methyltransferase [Bartonella bacilliformis KC583] gi|120614586|gb|ABM45187.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583] Length = 276 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 133/272 (48%), Positives = 185/272 (68%), Gaps = 5/272 (1%) Query: 13 FSLKDSHYAKLRRNHRDYK-KMQSFNQKSRHTSQP---ENLFLYGVHTVSAALNNPSRKI 68 + ++S++A LRR +RD K + S + + ++ P E + LYG+H V+AAL NP+R + Sbjct: 4 KARRNSYFASLRRQYRDTKGFISSPSARFKYGPSPLTAEKIRLYGIHAVNAALQNPNRVL 63 Query: 69 FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 L AT NAL RL+ + P P ++ P+ +D ++G +AVHQG+ LET PL S L Sbjct: 64 ECLYATPNALKRLNIVESNP-PCLLELCSPKKLDTLIGSDAVHQGVVLETKPLKSRHLSE 122 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + ++ L++V+D + DPHN+GAI+RSAVAF +ITT R+SP ES VLAK+ASGALE I Sbjct: 123 LTHTDLVVVMDQITDPHNVGAIMRSAVAFKAGALITTHRHSPQESGVLAKAASGALEMID 182 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 YI + NL +AL+++H F + GL S+ KPLE + KIALILGAEGKGLR KT+ET Sbjct: 183 YITVRNLAEALKELHKADFISFGLDSEGGKPLEIALTGQKIALILGAEGKGLRKKTRETV 242 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++A L MPG IK+LNVSNAA +ALY T + Sbjct: 243 CALARLDMPGNIKSLNVSNAATIALYATHKYL 274 >gi|170077725|ref|YP_001734363.1| rRNA methylase [Synechococcus sp. PCC 7002] gi|169885394|gb|ACA99107.1| rRNA methylase, TrmH family [Synechococcus sp. PCC 7002] Length = 262 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 102/255 (40%), Gaps = 4/255 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K+++ +Q R + L L G + + AA+ +L T + A Sbjct: 6 QNPLVKEIRKLHQ-GRERQKQGRLLLEGTNLIEAAIAKG-FSFQTVLFTAAWQTKYPALA 63 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + + V + + K+ V+ + T + + QL + ++ + DP Sbjct: 64 SQLNGDRQTLVSEEVLQKVA--TTVNPDGIVATLDQALISQTPPQTLQLGVAVERLQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A + DG++ + + + +++ GA + I + LQ+ + Sbjct: 122 NLGTIIRTATATTVDGLLLSHDSVNPSNPKVLRASVGAWFQTTPVVIPTFAEQLQRYRAQ 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G Q + + K ++LG EG GL P A + M +++LNV Sbjct: 182 GVQIVATLPQATKTYWDVDWRQPSLILLGNEGAGLSPAIASLANETVQIPMGPGVESLNV 241 Query: 266 SNAAAVALYITQNHF 280 + A A+ LY + Sbjct: 242 AIACALMLYEARRQR 256 >gi|18311406|ref|NP_563340.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens str. 13] gi|168214713|ref|ZP_02640338.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens CPE str. F4969] gi|182626981|ref|ZP_02954711.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens D str. JGS1721] gi|18146090|dbj|BAB82130.1| probable tRNA/rRNA methyltransferase [Clostridium perfringens str. 13] gi|170713821|gb|EDT26003.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens CPE str. F4969] gi|177907651|gb|EDT70275.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens D str. JGS1721] Length = 289 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 58/290 (20%), Positives = 119/290 (41%), Gaps = 12/290 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M K + K + + R R+ K ++ + + + G + V Sbjct: 1 MTKSENKYKQLTRKQKYALEREQRA--REEKYARNTRTFTEEEVKVREDLVEGRNAVIEL 58 Query: 61 LNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + +IF VK V + +D + +A HQG+ + Sbjct: 59 LKSDKTIEQIFIANGKMEGSINKILGLAKEKKIVVKEVDRKKLDLMSETKA-HQGVIAQI 117 Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 P T++ + +++LD + DPHN+G+I+R+A GII KR + Sbjct: 118 TPFKYSTVEDILDLAKSKNEDPFIVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVG 177 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + + K++ GA+EH+ +++N+ +A++++ + G ++ + + Sbjct: 178 VTGTVYKASVGAIEHMKIAKVTNINNAIEELKANNVWIYGADIAGEEYSYETNFKGACGI 237 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 I+G+EG+G+ T++ + + M G I +LN S A + +Y Sbjct: 238 IIGSEGRGMSNLTKKKCDKLVKIPMVGKINSLNASVAGGIMMYEVLKSRI 287 >gi|323484883|ref|ZP_08090238.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14163] gi|323401764|gb|EGA94107.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14163] Length = 266 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 100/261 (38%), Gaps = 10/261 (3%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA- 85 + + + + +K++ + + G + P ++ + +++ L + A Sbjct: 7 NNRVRSVSALAKKAKIRREQGLFIVEGAKMFAEL---PKDRLKETYVSESFLRQHGEKAS 63 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGL------ALETAPLLSPTLDAVRNSQLLMVLD 139 L + V + + + L + ++ + LM+L+ Sbjct: 64 KLLQGICFEEVSDDVMKYMSDTQTPQGILAVAAQLSHSLNEIVKGDGIKRNSPAHLMILE 123 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N+G ILR+ G++ + + + +S G++ +P++ + + AL Sbjct: 124 TIQDPGNLGTILRAGEGAGITGVVMNSATADIYNPKVIRSTMGSIYRVPFVYVEDWQQAL 183 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 ++ + G + K E E ++G E GL +T A + M G Sbjct: 184 GRIKAEGIRLYAAHLKGKVSYENEDYRTDTGFLIGNEANGLTEETAAMADCYVRIPMAGQ 243 Query: 260 IKALNVSNAAAVALYITQNHF 280 +++LN + AA++ ++ T Sbjct: 244 VESLNAAVAASILMFETARQR 264 >gi|165871509|ref|ZP_02216156.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0488] gi|167635640|ref|ZP_02393952.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0442] gi|167641566|ref|ZP_02399813.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0193] gi|170688235|ref|ZP_02879445.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0465] gi|170708732|ref|ZP_02899170.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0389] gi|177653114|ref|ZP_02935401.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0174] gi|190566871|ref|ZP_03019787.1| RNA methyltransferase, TrmH family [Bacillus anthracis Tsiankovskii-I] gi|227817345|ref|YP_002817354.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. CDC 684] gi|229604592|ref|YP_002868840.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0248] gi|164712806|gb|EDR18336.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0488] gi|167510451|gb|EDR85850.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0193] gi|167529060|gb|EDR91815.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0442] gi|170126412|gb|EDS95301.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0389] gi|170667741|gb|EDT18494.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0465] gi|172081638|gb|EDT66709.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0174] gi|190561862|gb|EDV15831.1| RNA methyltransferase, TrmH family [Bacillus anthracis Tsiankovskii-I] gi|227005701|gb|ACP15444.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. CDC 684] gi|229269000|gb|ACQ50637.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0248] Length = 265 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + + ++ + +S Sbjct: 108 ESEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPIVKGNLKEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|163802755|ref|ZP_02196645.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4] gi|159173462|gb|EDP58284.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4] Length = 247 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 113/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A HQG+ + ++ LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-HGANHQGIIARVKAAKQLNENDIDGILAQHDAPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 II K S +A ++K A GA E +P IR++NL ++ + G +G + ++ Sbjct: 122 AAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGGGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HFA 281 Sbjct: 242 QRI 244 >gi|85858124|ref|YP_460326.1| 23S rRNA Gm2251 methyltransferase [Syntrophus aciditrophicus SB] gi|85721215|gb|ABC76158.1| 23S rRNA Gm2251 methyltransferase [Syntrophus aciditrophicus SB] Length = 249 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 113/241 (46%), Gaps = 11/241 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKI 104 +YGV+ + AL + + +++ + + PV+ +D + Sbjct: 1 MEVIYGVNPLREALISGGEGVTRIVVARGRSESSISEIRTLAKQRGIPVEIRERSFLDDL 60 Query: 105 VGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 G + HQG+ LD L+++LD + DPHN+GA++RSA F Sbjct: 61 AGHAS-HQGVLGVCTAYRYQDLDAVIANRHPSCPYDLVLILDGILDPHNLGALIRSAHCF 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +GII +R + S + + K+++GA HIP R++NL AL ++ + GF G + + Sbjct: 120 GANGIILPERRAASVTGTVIKTSAGAARHIPIARVANLARALDELKTKGFWIFGADARAD 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + L++G E KGLRP ++ + + M G I +LNVS + + L+ + Sbjct: 180 QSVSDPDYQGAVGLVMGGESKGLRPLIRKKCDDLISIPMLGKIDSLNVSVSGGIILHEIR 239 Query: 278 N 278 Sbjct: 240 R 240 >gi|254227152|ref|ZP_04920689.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51] gi|125620326|gb|EAZ48723.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51] Length = 247 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTVPPQTIDKI 104 N +YG+H V+A L + + K RL N ++ + + +D Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL P + A LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-EGANHQGLIARVKPARQLNENDLDDILAQHEHPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A + L+ Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|30264631|ref|NP_847008.1| RNA methyltransferase [Bacillus anthracis str. Ames] gi|47530101|ref|YP_021450.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor'] gi|49187452|ref|YP_030704.1| RNA methyltransferase [Bacillus anthracis str. Sterne] gi|65321929|ref|ZP_00394888.1| COG0566: rRNA methylases [Bacillus anthracis str. A2012] gi|254686946|ref|ZP_05150804.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str. CNEVA-9066] gi|254736669|ref|ZP_05194375.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str. Western North America USA6153] gi|254741707|ref|ZP_05199394.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str. Kruger B] gi|254754696|ref|ZP_05206731.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str. Vollum] gi|254757528|ref|ZP_05209555.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str. Australia 94] gi|30259289|gb|AAP28494.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. Ames] gi|47505249|gb|AAT33925.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. 'Ames Ancestor'] gi|49181379|gb|AAT56755.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. Sterne] Length = 254 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 1 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 42 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + + ++ + +S Sbjct: 97 ESEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 153 QGSIFHLPIVKGNLKEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 212 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248 >gi|217971920|ref|YP_002356671.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica OS223] gi|217497055|gb|ACK45248.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS223] Length = 246 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102 + ++G+H V A L + +I +L + + + ++ + +D Sbjct: 2 KKQDIIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLANQAKAFGTTIQVASRKALD 61 Query: 103 KIVGKEAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ L A L++LD V DPHN+GA LR+A A Sbjct: 62 DKA-ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII K S +A ++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVQGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L Q +A+ +GAE KGLR ++E+ S+ + M G + +LNVS A + L+ Sbjct: 181 DCELYQADLKGSLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|109897320|ref|YP_660575.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas atlantica T6c] gi|109699601|gb|ABG39521.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudoalteromonas atlantica T6c] Length = 246 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 67/244 (27%), Positives = 112/244 (45%), Gaps = 8/244 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTID 102 ++ +LYG+H + A + ++ +L K + + V+ +T+D Sbjct: 2 AQHEWLYGIHALEAVIEREPERLIELFVLKGRDDKPINSIINHARKFGIAVQFCQRKTLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E +A D + L++LD V DPHN+GA LR+A A Sbjct: 62 DKVNGEQHQGVVAKAKPGKQFNENDLDEIIKKSATPFLLILDGVTDPHNLGACLRTADAA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D I+ K S + + V+ K A GA + IP I+++NL L+++ G +G + ++ Sbjct: 122 GIDAIVVPKDNSVALTPVVRKVACGAADLIPLIQVTNLARTLREIKDAGVWVVGTAGEAT 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + IAL++GAEGKG+R T+E + L M G + +LNVS A + LY Sbjct: 182 QSIYDCKMQGPIALVMGAEGKGMRRLTREHCDELIKLPMAGSVSSLNVSVATGICLYEIV 241 Query: 278 NHFA 281 Sbjct: 242 RQRT 245 >gi|325266642|ref|ZP_08133319.1| tRNA/rRNA methyltransferase [Kingella denitrificans ATCC 33394] gi|324982085|gb|EGC17720.1| tRNA/rRNA methyltransferase [Kingella denitrificans ATCC 33394] Length = 294 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 93/260 (35%), Gaps = 5/260 (1%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 A + K + ++H + L G H ++A L+ + + L Sbjct: 35 AIQSPQNPQLKHLAKLLGHAKHRREHSQAVLEGAHLLTAYLDAGNTPLQVYL--PEHRLH 92 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 A L P V P + + +HQ L T L P + +L+ D Sbjct: 93 EPEIAALLCRLPADIVQPVSGKALGKITQLHQAEDLMTLIALPPPVAPESPDYVLL--DR 150 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V D N+G +LRSA A I+ + + + S + ++ GA + LT+ Sbjct: 151 VQDAGNVGTVLRSAAAAGIRQIVLGEGCADAYSPKVLRAGMGAHFLLHIQERVCLTEWCA 210 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + L + L Q A I G EG G+ P+ A + M G Sbjct: 211 RY-PHAVYATALDGNRPALLYQLDLRAPCAWIFGNEGSGVSPELIALAGRSVKIPMQGAT 269 Query: 261 KALNVSNAAAVALYITQNHF 280 ++LN++ AA V L+ Sbjct: 270 ESLNIAQAATVCLFEQMRQR 289 >gi|255690061|ref|ZP_05413736.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides finegoldii DSM 17565] gi|260624338|gb|EEX47209.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides finegoldii DSM 17565] Length = 247 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I HQG+ + + L + ++LD V D N GAI R+ Sbjct: 63 IT--RKNHQGVIAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I R S S +A K+++GAL +P R +L LQ + GF+ + + Sbjct: 121 AAVDAVIIPARGSASVNADAVKTSAGALHTLPVCREQSLRSTLQYLKDSGFRIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE G+ + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPLCIIMGAEDTGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRN 245 >gi|212694905|ref|ZP_03303033.1| hypothetical protein BACDOR_04442 [Bacteroides dorei DSM 17855] gi|237727137|ref|ZP_04557618.1| tRNA/rRNA methyltransferase [Bacteroides sp. D4] gi|212662465|gb|EEB23039.1| hypothetical protein BACDOR_04442 [Bacteroides dorei DSM 17855] gi|229433993|gb|EEO44070.1| tRNA/rRNA methyltransferase [Bacteroides dorei 5_1_36/D4] Length = 255 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 108/245 (44%), Gaps = 13/245 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTID 102 +N ++GV V A+ R+I ++L K+ + L + PV+ VP + I+ Sbjct: 3 EKNEMIFGVRAVIEAIQAG-REIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERIN 61 Query: 103 KIVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 +I HQG+ + + L + L ++LD + D N GAI R+ Sbjct: 62 RIT--RKNHQGVVAFISSVTYQKTENLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 D II + S S +A K+++GAL +P R +LT+ ++ + GF+ + + Sbjct: 120 CAGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQSLTNTIKYLKDCGFKIVAATEK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + D + +I+GAE G+ + + + G I++LNVS AA + +Y Sbjct: 180 GDYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYE 239 Query: 276 TQNHF 280 Sbjct: 240 AVKQR 244 >gi|73663533|ref|YP_302314.1| SpoU rRNA methylase family protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|90110724|sp|Q49V41|TRMHL_STAS1 RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|72496048|dbj|BAE19369.1| SpoU rRNA Methylase family protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 249 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 119/244 (48%), Gaps = 11/244 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E + + G H V A+ + KI K + V++VP ID + Sbjct: 2 EEIVIVGRHAVKEAIVSGHTINKILIQDTIKKGQINEILKLANSNKIIVQSVPKSKIDGL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+A AP DA Q +++LD + DPHN+G+ILR+A A Sbjct: 62 SD--SPHQGVAAYIAPYEYADFDAFVAQQKAQDKLSTVLILDGLEDPHNLGSILRTADAS 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S + + +AK+++GA++HIP +R++NL + ++ + G+ +G +++ Sbjct: 120 GVDGVIIPKRRSVALTQTVAKASTGAIQHIPVMRVTNLANTIETLKDNGYWIVGTEAENS 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + +++G+EG+G+ +E ++ M G + +LN S AA++ +Y Sbjct: 180 TDYREMDAGMPLGIVIGSEGQGMSRLVKEKCDFYINIPMVGHVNSLNASVAASLMMYEVF 239 Query: 278 NHFA 281 Sbjct: 240 RKRN 243 >gi|261250419|ref|ZP_05942994.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio orientalis CIP 102891] gi|260938988|gb|EEX94975.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio orientalis CIP 102891] Length = 245 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 116/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAFVLKGRQDDRLMPILNELQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQG+ P + A + LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-RGANHQGIMARVKPAKQLNENDLDDILAKHEAPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSANITATVSKVACGAAESVPLVRVTNLARTMRTLQEQGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ V L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|110800667|ref|YP_697113.1| RNA methyltransferase [Clostridium perfringens ATCC 13124] gi|168211254|ref|ZP_02636879.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens B str. ATCC 3626] gi|110675314|gb|ABG84301.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens ATCC 13124] gi|170710748|gb|EDT22930.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens B str. ATCC 3626] Length = 289 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 58/290 (20%), Positives = 119/290 (41%), Gaps = 12/290 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M K + K + + R R+ K ++ + + + G + V Sbjct: 1 MTKSENKYKQLTRKQKYALEREQRA--REEKYARNTRTFAEEEVKVREDLVEGRNAVIEL 58 Query: 61 LNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + +IF VK V + +D + +A HQG+ + Sbjct: 59 LKSDKTIEQIFIANGKMEGSINKILGLAKEKKIVVKEVDRKKLDLMSETKA-HQGVIAQI 117 Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 P T++ + +++LD + DPHN+G+I+R+A GII KR + Sbjct: 118 TPFKYSTVEDILDLAKSKNEDPFIVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVG 177 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + + K++ GA+EH+ +++N+ +A++++ + G ++ + + Sbjct: 178 VTGTVYKASVGAIEHMKIAKVTNINNAIEELKANNLWIYGADIAGEEYSYETNFKGACGI 237 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 I+G+EG+G+ T++ + + M G I +LN S A + +Y Sbjct: 238 IIGSEGRGMSNLTKKKCDKLVKIPMVGKINSLNASVAGGIMMYEVLKSRI 287 >gi|218905788|ref|YP_002453622.1| RNA methyltransferase, TrmH family [Bacillus cereus AH820] gi|228929608|ref|ZP_04092626.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935871|ref|ZP_04098681.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948286|ref|ZP_04110569.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093656|ref|ZP_04224756.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-42] gi|229124127|ref|ZP_04253319.1| RNA methyltransferase, TrmH [Bacillus cereus 95/8201] gi|218537643|gb|ACK90041.1| RNA methyltransferase, TrmH family [Bacillus cereus AH820] gi|228659429|gb|EEL15077.1| RNA methyltransferase, TrmH [Bacillus cereus 95/8201] gi|228689743|gb|EEL43550.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-42] gi|228811273|gb|EEM57611.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823639|gb|EEM69461.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829995|gb|EEM75614.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 265 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + + ++ + +S Sbjct: 108 ESEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|170077013|ref|YP_001733651.1| rRNA methyltransferase [Synechococcus sp. PCC 7002] gi|169884682|gb|ACA98395.1| rRNA methyltransferase, TrmH family, group 3 [Synechococcus sp. PCC 7002] Length = 388 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 119/246 (48%), Gaps = 13/246 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQT 100 + +N +YG H V + L + R + ++ A + V Sbjct: 131 EEDNDLIYGKHAVLSVLES-ERPLNRIWVTSRLRHANRFHTLLQAAKNQGTVIDEVSMSR 189 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRS 153 +D + VHQG+A++TAP L A S ++++ D + DPHN+GAI+R+ Sbjct: 190 LDYLT-NRGVHQGIAVQTAPYEYMELPDLIEQAKAKTESPVVVIADGITDPHNLGAIIRT 248 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I +R + ++ + K A+GALEH P R+ NL+ A++++ GF G + Sbjct: 249 AEAIGAQGMIIPQRRAVGVTSTVMKVAAGALEHFPVARVVNLSRAMEELKEAGFWIYGTA 308 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + K L I L++G+EG+GL TQ+ + + M G +LN S AAA+AL Sbjct: 309 AGTSKALHNIKFEGAIGLVIGSEGQGLSLLTQKHCDELVAIPMTGKTPSLNASVAAAIAL 368 Query: 274 YITQNH 279 Y Sbjct: 369 YEVYRQ 374 >gi|196034467|ref|ZP_03101876.1| RNA methyltransferase, TrmH family [Bacillus cereus W] gi|254724510|ref|ZP_05186293.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str. A1055] gi|195993009|gb|EDX56968.1| RNA methyltransferase, TrmH family [Bacillus cereus W] Length = 254 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 1 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 42 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + + ++ + +S Sbjct: 97 ESEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 153 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 212 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248 >gi|172036714|ref|YP_001803215.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. ATCC 51142] gi|171698168|gb|ACB51149.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. ATCC 51142] Length = 292 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 73/284 (25%), Positives = 129/284 (45%), Gaps = 15/284 (5%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 + ++ S + + ++ + + S Q E+ +YG H+V AAL + + Sbjct: 7 PRGDRRSSSRKAKFSGKKPVIPS----RLQPTSSPEPQQSEDDLIYGRHSVLAALESDRQ 62 Query: 67 KIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 + + A+ + V Q + +I A HQG+A + AP Sbjct: 63 LNRIWITNRLHYDPRFHNLIQASKAKGAVIDEVSLQRLSQIT-NGANHQGVAAQVAPYTY 121 Query: 124 PTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 LD + ++++ D + DPHN+GAI+R+A A C G+I +R + ++ + Sbjct: 122 HELDELITQAKANSDEPVIVIADGIADPHNLGAIIRTAEAMGCQGLIIPQRRAAGVTSTV 181 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 +K ++GALE P R+ NL+ AL+ + + GF G ++ K L+ I L++G+E Sbjct: 182 SKVSAGALESFPVARVVNLSRALETLKAEGFWIYGTVAEGGKRLQDFDFRGAIGLVIGSE 241 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G GL TQ + + + G +LN S AAA+ LY Sbjct: 242 GSGLSLLTQRCCDELISIPLEGKTPSLNASVAAAINLYEIYRQR 285 >gi|296333093|ref|ZP_06875547.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672795|ref|YP_003864466.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149709|gb|EFG90604.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411038|gb|ADM36156.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] Length = 249 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 120/246 (48%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102 ++ ++ G + V L + RK+++L +N + + ++ VP + +D Sbjct: 3 QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V HQG+ + A LD ++LD + DPHN+G+I+R+A Sbjct: 62 QMV--TGQHQGVVAQVAAYEYAELDDLYKAAEERNEQPFFLILDELEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ KR + + +AK+++GA+EHIP R++NL L++M G +G + Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDAS 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +++ N +AL++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 180 AREDYRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239 Query: 276 TQNHFA 281 Sbjct: 240 VYRKRN 245 >gi|229099022|ref|ZP_04229956.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29] gi|229118053|ref|ZP_04247412.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3] gi|228665276|gb|EEL20759.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3] gi|228684250|gb|EEL38194.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29] Length = 265 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 97/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + + + ALI+G EG G+ Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENSVPVYGTALENGAPYG-EVTPAGSFALIVGNEGSGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|229032207|ref|ZP_04188180.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271] gi|228728987|gb|EEL79990.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271] Length = 265 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW + + VP + + E A+ Sbjct: 53 LKAG--VVTELIVSDQTDLPKDWTVD---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + + ++ + +S Sbjct: 108 ESEVALADGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPVVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGSGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + ++ + G ++LNV+ AA + Y Q Sbjct: 223 SQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|227485587|ref|ZP_03915903.1| tRNA/rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] gi|227236453|gb|EEI86468.1| tRNA/rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] Length = 239 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 121/230 (52%), Gaps = 4/230 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-PFPVKTVPPQTIDKIVGKEA 109 +YG V A+++ + + +N+ + A L + V + DKI E Sbjct: 9 IYGRKPVIDAIDSGVKIYKAFVIKQNSKIVEEIIAKLNKANVEINFVDKRFFDKI---EL 65 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ +E L + Q L++LD + DPHN+GAI+RSA +F DG+I +R S Sbjct: 66 NHQGVMVEAESFEYKDLRDLDKYQRLIILDQIEDPHNLGAIIRSAESFGFDGVIIPERRS 125 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 S S ++ K+++GA+ +I I + N A++++ GF GL+ ++ P++Q K+ Sbjct: 126 ASVSPIVYKTSAGAINNINIIMVKNTNRAIEEIKEAGFWVYGLAGEASSPIDQVDLKGKV 185 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 LI+G EGKGL +E + ++ M G + +LN S A+A+A+Y Sbjct: 186 CLIVGNEGKGLSRLVRENCDILINIPMKGFVNSLNASVASAIAMYEVLRQ 235 >gi|56751982|ref|YP_172683.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] gi|56686941|dbj|BAD80163.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] Length = 519 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 75/268 (27%), Positives = 126/268 (47%), Gaps = 14/268 (5%) Query: 25 RNHRDYKKMQSFNQKSRHTSQ-PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--- 80 R RD + + N + ++ +YG H V AAL +R + ++ T Sbjct: 217 RPSRDRELNREVNTSPAGDQEATDHELIYGRHAVLAALQ-GNRTLNRIWVTPRLRYESTF 275 Query: 81 -LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNS 132 DA V VP + I ++ AVHQG+A + AP L Sbjct: 276 LELIDAAKAGGAVVDEVPVERIRQLTD-GAVHQGIAAQVAPYPYQELSDLIAQAKAATTD 334 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +++V D + DPHN+GAI+R+A A G++ +R + +A +AK A+GALE P R+ Sbjct: 335 PVIVVADGITDPHNLGAIIRTAGALGAHGLVIPQRRAVGVTAAVAKVAAGALESFPVARV 394 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NL AL+++ GF G + ++K+ + + + + L++G+E +GL T+E + Sbjct: 395 VNLNPALEELKDAGFWIYGAAGEAKQSIHETSFSGPVVLVVGSEDEGLSLLTRERCDHLI 454 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 + + G +LN S AA + LY Sbjct: 455 SIPLRGKTNSLNASVAAGMVLYEVSRQR 482 >gi|323693749|ref|ZP_08107946.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673] gi|323502200|gb|EGB18065.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673] Length = 266 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 100/261 (38%), Gaps = 10/261 (3%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA- 85 + + + + +K++ + + G + P ++ + +++ L + A Sbjct: 7 NNRVRSVSALAKKAKIRREQGLFIVEGAKMFAEL---PKDRLKETYVSESFLRQHGEKAS 63 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGL------ALETAPLLSPTLDAVRNSQLLMVLD 139 L + V + + + L + ++ + LM+L+ Sbjct: 64 ELLQGICFEEVSDDVMKYMSDTQTPQGILAVAAQLSHSLNEIVKGDGIKRDSPAHLMILE 123 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N+G ILR+ G++ + + + +S G++ +P++ + + AL Sbjct: 124 TIQDPGNLGTILRAGEGAGITGVVMNSATADIYNPKVIRSTMGSIYRVPFVYVEDWQQAL 183 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 ++ + G + K E E ++G E GL +T A + M G Sbjct: 184 GRIKAEGIRLYAAHLKGKVSYENEDYRTDTGFLIGNEANGLTEETAAMADCYVRIPMAGQ 243 Query: 260 IKALNVSNAAAVALYITQNHF 280 +++LN + AA++ ++ T Sbjct: 244 VESLNAAVAASILMFETARQR 264 >gi|307249241|ref|ZP_07531238.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251563|ref|ZP_07533470.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306858765|gb|EFM90824.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861027|gb|EFM93033.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 259 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 109/238 (45%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A L+N ++ ++L K RL N V+ V QT+D Sbjct: 17 IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLTPLLNELQRLGISVQQVNRQTLDNKAQG 76 Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E +A D A + + L++LD V DPHN+GA LR+A A D + Sbjct: 77 EVHQGIIAKVVPQKELNEHDLDAILAQKQNPFLLILDGVTDPHNLGACLRTADAAGVDAV 136 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LE 221 I K S ++ K A GA E +P IR++NL ++++ I ++ + Sbjct: 137 IVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIWIVGTAGEATSGIY 196 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q IAL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 197 QAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 254 >gi|307247018|ref|ZP_07529072.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306856470|gb|EFM88619.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 259 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 109/238 (45%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A L+N ++ ++L K RL N V+ V QT+D Sbjct: 17 IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLTPLLNELQRLGISVQQVNRQTLDNKAQG 76 Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E +A D A + + L++LD V DPHN+GA LR+A A D + Sbjct: 77 EVHQGIIAKVVPQKELNEHDLDAILAQKQNPFLLILDGVTDPHNLGACLRTADAAGVDAV 136 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LE 221 I K S ++ K A GA E +P IR++NL ++++ I ++ + Sbjct: 137 IVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIWIVGTAGEATSGIY 196 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q IAL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 197 QAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 254 >gi|32033775|ref|ZP_00134060.1| COG0566: rRNA methylases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207530|ref|YP_001052755.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae L20] gi|165975500|ref|YP_001651093.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149311|ref|YP_001967836.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250521|ref|ZP_07336718.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251865|ref|ZP_07338036.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307244843|ref|ZP_07526942.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253797|ref|ZP_07535651.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256063|ref|ZP_07537851.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258253|ref|ZP_07539996.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260494|ref|ZP_07542188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262624|ref|ZP_07544254.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096322|gb|ABN73150.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875601|gb|ABY68649.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914442|gb|ACE60694.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649295|gb|EFL79480.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650509|gb|EFL80668.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854288|gb|EFM86494.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863281|gb|EFM95221.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865485|gb|EFM97380.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867713|gb|EFM99558.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869806|gb|EFN01589.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306872047|gb|EFN03761.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 247 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 109/238 (45%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A L+N ++ ++L K RL N V+ V QT+D Sbjct: 5 IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLTPLLNELQRLGISVQQVNRQTLDNKAQG 64 Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E +A D A + + L++LD V DPHN+GA LR+A A D + Sbjct: 65 EVHQGIIAKVVPQKELNEHDLDAILAQKQNPFLLILDGVTDPHNLGACLRTADAAGVDAV 124 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LE 221 I K S ++ K A GA E +P IR++NL ++++ I ++ + Sbjct: 125 IVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIWIVGTAGEATSGIY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q IAL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 185 QAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 242 >gi|321313767|ref|YP_004206054.1| 23S rRNA methyltransferase [Bacillus subtilis BSn5] gi|320020041|gb|ADV95027.1| 23S rRNA methyltransferase [Bacillus subtilis BSn5] Length = 249 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 120/246 (48%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102 ++ ++ G + V L + RK+++L +N + + ++ VP + +D Sbjct: 3 QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V HQG+ + A LD ++LD + DPHN+G+I+R+A Sbjct: 62 QMV--TGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ KR + + +AK+++GA+EHIP R++NL L++M G +G + Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDAS 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +++ N +AL++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 180 AREDYRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239 Query: 276 TQNHFA 281 Sbjct: 240 VYRKRN 245 >gi|291482468|dbj|BAI83543.1| hypothetical protein BSNT_00195 [Bacillus subtilis subsp. natto BEST195] Length = 249 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 120/246 (48%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102 ++ ++ G + V L + RK+++L +N + + ++ VP + +D Sbjct: 3 QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V HQG+ + A LD ++LD + DPHN+G+I+R+A Sbjct: 62 QMV--TGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ KR + + +AK+++GA+EHIP R++NL L++M G +G + Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDAS 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +++ N +AL++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 180 AREDYRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239 Query: 276 TQNHFA 281 Sbjct: 240 VYRKRN 245 >gi|150010995|gb|ABR57153.1| SpoU rRNA methylase family protein [Staphylococcus xylosus] Length = 249 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 119/244 (48%), Gaps = 11/244 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E + + G H V A+ + KI K V++VP ID + Sbjct: 2 EEIVIVGRHAVKEAIVSGHTINKILIQDTIKKGQINEILKKANSRKIIVQSVPKSKIDGL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+A AP DA Q +++LD + DPHN+G+ILR+A A Sbjct: 62 SD--SPHQGIAAYIAPYEYADFDAFLEKQKAQDKLSTVLILDGLEDPHNLGSILRTADAS 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S + + +AK+++GA+EHIP +R++NL + ++ + G+ +G +++ Sbjct: 120 GVDGVIIPKRRSVALTQTVAKASTGAIEHIPVMRVTNLANTIETLKDNGYWVVGTEANNS 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A+++G+EG+G+ ++ ++ M G + +LN S AA++ +Y Sbjct: 180 TDYREMDVAMPLAIVIGSEGQGMSRLVKDKCDFYINIPMVGHVNSLNASVAASLMMYEVF 239 Query: 278 NHFA 281 Sbjct: 240 RKRN 243 >gi|329955854|ref|ZP_08296657.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides clarus YIT 12056] gi|328525234|gb|EGF52284.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides clarus YIT 12056] Length = 246 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 104/245 (42%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKD-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 HQG+ + + L + L ++LD + D N GAI R+ Sbjct: 63 FT--RKNHQGVIAFVSAVTYQKTEDLVPFLFEEGKNPLFVMLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I + S + +A K+++GAL +P R NL D LQ + + GF + + Sbjct: 121 AAVDAVIIPAKNSVTVNADAVKTSAGALHTLPVCREQNLKDTLQYLKNSGFHIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE KG+ + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRT 245 >gi|325577249|ref|ZP_08147733.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus parainfluenzae ATCC 33392] gi|325160831|gb|EGC72952.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus parainfluenzae ATCC 33392] Length = 246 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 112/240 (46%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIVGK 107 +YG+H V++ L N ++ ++ K + + V+ V QT+DK Sbjct: 5 IYGIHAVNSILANSPERLIEVFVLKGREDKRLQPLLNELYALGIAVQFVTRQTLDKKSNG 64 Query: 108 EAVHQGLALETAP------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ L + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQEAKELNEHDLDELLTRKQNPLLLVLDGVTDPHNLGACLRTADAAGVSA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL + +G + ++ + + Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLARTLRDLQQNHNIWVVGTAGEATETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQTKLTGSLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|260589561|ref|ZP_05855474.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM 20583] gi|331082988|ref|ZP_08332107.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA] gi|260540129|gb|EEX20698.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM 20583] gi|330399725|gb|EGG79386.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA] Length = 249 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 101/238 (42%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K+F L ++ R H +K V + +D++ Sbjct: 10 VEGRNAVLEAFRSGKSVDKLFVLEKCEDGPVRTILREAKKHDTMIKYVKKERLDQLSETG 69 Query: 109 AVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A+ A + D L++LD++ DPHN+GAI+R+A G+ Sbjct: 70 KHQGVIAMTAAYNYAEVEDILAAAREKGEPPFLVLLDNIEDPHNLGAIIRTANLAGAHGV 129 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K + +A +A++++GAL + P +++NL ++ + G + + Sbjct: 130 IIPKNRAVGLTATVARTSAGALNYTPVAKVTNLARTIENLKKEGIWFVCA-DMGGTQMYD 188 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G EG G+ +E +A + M G I +LN S AA V Y Sbjct: 189 LDLKGAIGLVIGNEGDGVSKLVREKCDFIASIPMQGNIDSLNASVAAGVLAYEIVRQR 246 >gi|218130102|ref|ZP_03458906.1| hypothetical protein BACEGG_01689 [Bacteroides eggerthii DSM 20697] gi|317476595|ref|ZP_07935840.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA] gi|217987606|gb|EEC53934.1| hypothetical protein BACEGG_01689 [Bacteroides eggerthii DSM 20697] gi|316907191|gb|EFV28900.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA] Length = 246 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 104/245 (42%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKD-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 HQG+ + + L + L ++LD + D N GAI R+ Sbjct: 63 FT--RKNHQGVIAFVSAVTYQKTEDLVPFLFEEGKNPLFVMLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I + S + +A K+++GAL +P R NL D LQ + + GF + + Sbjct: 121 AAVDAVIIPAKNSVTVNADAVKTSAGALHTLPVCREQNLKDTLQYLKNSGFHIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE KG+ + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRT 245 >gi|228475266|ref|ZP_04059991.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis SK119] gi|228270731|gb|EEK12140.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis SK119] Length = 249 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 62/244 (25%), Positives = 121/244 (49%), Gaps = 13/244 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 E++ + G H V A+ + I ++ + + D ++TVP +D Sbjct: 2 EDIVIVGRHAVKEAIVSGHT-INKIWIQEGIRKQQINDILKNAKAQKLIIQTVPKSKLDN 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156 + A HQG+A AP D SQ +++LD + DPHN+G+I+R+A A Sbjct: 61 LA--NAPHQGVAALIAPYEYADFDQFIQSQKEKEGLSTIIILDGLEDPHNLGSIIRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DG++ KR S + + +AK+++GA++H+P +R++NL+ + ++ G+ G +D+ Sbjct: 119 SGVDGVVIPKRRSVALTQTVAKASTGAIQHVPVMRVTNLSKIIDELKDNGYWVAGAEADN 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +A+++G+EG+G+ ++ + M G + +LN S AA++ +Y Sbjct: 179 ATDYRNMAADMPLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNASVAASLMMYEV 238 Query: 277 QNHF 280 Sbjct: 239 YRKR 242 >gi|323141397|ref|ZP_08076288.1| RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium sp. YIT 12067] gi|322414146|gb|EFY04974.1| RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium sp. YIT 12067] Length = 248 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 117/246 (47%), Gaps = 13/246 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTI 101 + N + G + VS AL + R I ++L + A PV+TV + + Sbjct: 3 EQNNDLIAGRNAVSEALRS-QRSINKILLQEGAHGGSLGEIIALAKQKGVPVETVKAEKL 61 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSA 154 DK+ HQG+A AP+ TLD V +++LD + DP N+GA++RSA Sbjct: 62 DKLAKGLR-HQGVAALAAPIAFRTLDDVFACAAEKNEEPFILLLDELQDPQNVGALIRSA 120 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A G++ +R S +AV+AK ++GA+E++P ++I N+ ++++ + + Sbjct: 121 DAAGVHGVLMPRRRSCPLNAVVAKISAGAVEYVPVVQIGNIAQTIEEL-KQRGCWVVGAD 179 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + I L++GAEG+GL ++ + + M G + +LN S A AV +Y Sbjct: 180 MDGVDFYAANMSGPIVLVIGAEGRGLGRLVKQKCDDVVSIPMNGGVNSLNASAAGAVLMY 239 Query: 275 ITQNHF 280 Sbjct: 240 EVVRQR 245 >gi|322386796|ref|ZP_08060420.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus cristatus ATCC 51100] gi|321269078|gb|EFX52014.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus cristatus ATCC 51100] Length = 243 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 118/242 (48%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALMANTGNKLYIQDDLRGKNVSKIKDLAAAKKVSISWSPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L + L + LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVSEFAYADLADVLKKAEQEENPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 VHKWNTA-GKLALIIGNEGKGISSNIKKQVDEMLTIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|294623039|ref|ZP_06701928.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317] gi|291597595|gb|EFF28757.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317] Length = 254 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 100/276 (36%), Gaps = 24/276 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I L K ++ + L G H + A Sbjct: 1 MKEIQSAKNPRIKEL-------------------KKLHKKKYREEKAEYLLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ + + V + + + LA+ Sbjct: 42 -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQGILAVMMLT 100 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D S ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 101 SK----DTPDFSGGWLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P ++ ++ L++ K + A+I+G EG+G+ Sbjct: 157 QGSNYHLPVLQKDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGV 216 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + ++ M G ++LNV AA + LY Sbjct: 217 SQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252 >gi|284929697|ref|YP_003422219.1| rRNA methylase [cyanobacterium UCYN-A] gi|284810141|gb|ADB95838.1| rRNA methylase [cyanobacterium UCYN-A] Length = 260 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 99/256 (38%), Gaps = 5/256 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K+++ + + + F G H + A + L K + Sbjct: 7 NPLIKQIREL-RNVKKRREKGIFFFEGTHLLMTACEENCSLLTLLFTEKWKIENFKLWEI 65 Query: 87 LPHPFPVKT-VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V P+ + I + L P A + +L ++L+ + DP Sbjct: 66 ASRLTKRYETVSPEVLKSITTTVNP---DGVIVTALSRPFDKAKTDIKLGLILERLQDPG 122 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+AVA + DGI + +++ + ++++GA P + SNL D + + Sbjct: 123 NLGTIIRTAVATNIDGIWLSSDSVNIDNSKVIRASAGAWFKAPLVITSNLKDIVMNYKNQ 182 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + ++KK ++LG EG GL + A + + I++LNV Sbjct: 183 GVNVVATLPNAKKNYWDLDLTRPTIILLGNEGSGLSEQLVNMADETVKIPLEQNIESLNV 242 Query: 266 SNAAAVALYITQNHFA 281 + A+ LY + Sbjct: 243 AVTGALILYEAKRQRT 258 >gi|299822562|ref|ZP_07054448.1| rRNA methyltransferase [Listeria grayi DSM 20601] gi|299816091|gb|EFI83329.1| rRNA methyltransferase [Listeria grayi DSM 20601] Length = 252 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 53/278 (19%), Positives = 98/278 (35%), Gaps = 26/278 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ ++ + + K + + + G H V A Sbjct: 1 MEVITSLQNVHVKTWKKLQT-------------------RKGRQKSGQYLVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + L + F V V + + QG+ Sbjct: 42 LAQDGLVKEVIYTKDTILPFSLTETA----FDVYEVTREV-SHAISDTKTDQGVFAVVEM 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L LL+ D V DP N+G ++R+A A D ++ + + + + +SA Sbjct: 97 LEPSILMLFGKRFLLV--DAVQDPGNVGTLIRTADAAGYDAVVLGRGSADLYNPKVIRSA 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP I+ + L L + LE + +AL++G EG G+ Sbjct: 155 QGSHFHIPVIQANLLEWIGGLEEEGVPVIGALLDEHATKLEDIGPKETLALVVGNEGAGI 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 E + ++ + G ++LNV+ AA + +Y + Sbjct: 215 SAPIVERLSERVYIPIYGKSESLNVAVAAGILMYGIRK 252 >gi|104774335|ref|YP_619315.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423416|emb|CAI98289.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 260 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 102/259 (39%), Gaps = 5/259 (1%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 + N+ K + QK ++ + + G H V AL S K ++LAT+ AL+R Sbjct: 3 ERTSVNNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALKA-SVKYREILATEAALSR 60 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL---LSPTLDAVRNSQLLMV 137 L + + + + + ++ + ++ Sbjct: 61 LAQLGLAYDEGKLIKISQSVASHLSSTKNSQDIFMTVKINMTVKINRPKHFAFSYGKWVL 120 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD + DP N+G I+R+A A DG+I + + + + +S G+ H+ I+ Sbjct: 121 LDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIKADLPDA 180 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 + L + K L ++ALI+G E G+ P+ + A ++ + Sbjct: 181 IASLKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIEALADEKLYIPIK 240 Query: 258 GIIKALNVSNAAAVALYIT 276 G ++LN + AA + +Y Sbjct: 241 GRAESLNAAVAAGIMIYHF 259 >gi|300691792|ref|YP_003752787.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum PSI07] gi|299078852|emb|CBJ51513.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum PSI07] Length = 249 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 79/239 (33%), Positives = 119/239 (49%), Gaps = 7/239 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 L G H V+A L + +R I ++ N R D A + + + I G Sbjct: 6 LLIGFHAVTARLRHDARSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADNERLRGIAG 65 Query: 107 KEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A A L LD + LL+VLD V DPHN+GA LR A A + Sbjct: 66 TDRHQGVVAKAEALSLALNLDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A +AK ASGA E +PYI ++NL L+++ G IG + ++++ L Q Sbjct: 126 IAPKDRSVGINATVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQDLYQ 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 IAL++GAEG+G+R T+ET ++ + M G +++LNVS A+ V L+ A Sbjct: 186 ADFKGAIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244 >gi|89075975|ref|ZP_01162347.1| putative RNA methyltransferase, TrmH family protein [Photobacterium sp. SKA34] gi|89048324|gb|EAR53903.1| putative RNA methyltransferase, TrmH family protein [Photobacterium sp. SKA34] Length = 244 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 109/239 (45%), Gaps = 8/239 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 ++G+H V A L + + ++ K RL ++ + +D V Sbjct: 6 IFGIHAVKAVLASDPVRFIEVFVLKGREDDRLLPLVTELQSLGITIQEAGRKALDDKVKG 65 Query: 108 EAVHQGLALETAPLLSP-----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A L + S LL++LD V DPHN+GA LR+A A + Sbjct: 66 ASHQGIVARVRPGKQYNENDLDDLLVGKESPLLLILDGVTDPHNLGACLRNADAAGAVAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A +K A GA E +P +R++NL ++ + G +G + ++ + Q Sbjct: 126 IVPKDRSAQLNATASKVACGAAEIMPLVRVTNLARTMRALQDKGVWIVGTAGEATHDIYQ 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +A+++GAEG+G+R T+ET + + M G + +LNVS A + L+ + Sbjct: 186 SKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQRS 244 >gi|294616353|ref|ZP_06696146.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636] gi|291590867|gb|EFF22583.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636] Length = 254 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 101/276 (36%), Gaps = 24/276 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I L K ++ + L G H + A Sbjct: 1 MKEIQSAKNPRIKEL-------------------KKLHKKKYREEKAEYLLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ + + V + + + LA+ T Sbjct: 42 -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQGILAVMTLT 100 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D S ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 101 SK----DTPDFSGGWLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P ++ ++ L++ K + A+I+G EG+G+ Sbjct: 157 QGSNYHLPVLQKDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGV 216 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + ++ M G ++LNV AA + LY Sbjct: 217 SQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252 >gi|194335814|ref|YP_002017608.1| RNA methyltransferase, TrmH family, group 3 [Pelodictyon phaeoclathratiforme BU-1] gi|194308291|gb|ACF42991.1| RNA methyltransferase, TrmH family, group 3 [Pelodictyon phaeoclathratiforme BU-1] Length = 248 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 104/243 (42%), Gaps = 7/243 (2%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFP-VKTVPPQTID 102 + +YG + V L I ++ N +L V Sbjct: 4 EHSENIVYGRNAVLELLQQKPESIEKIYFQFNTSHPKLKEIVITARRLKLVSGKARLEKL 63 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 ++ HQG+ + + +L+ LL+VL ++DPHNIGAI+R+A A Sbjct: 64 SLIAGTTKHQGVCALISSVTYYSLEEVLATPRNTFPLLVVLQGLDDPHNIGAIIRTAEAV 123 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + D ++ + +AV+ K+++GAL H+ ++ +L AL+ +H Q + +++ Sbjct: 124 AADAVVLVEGKGSPVNAVVHKASAGALSHMRICKVKSLVRALELLHQCNVQVLAADMEAE 183 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A++LG EG G+ P+ + + + M G +++LNVS A V LY Sbjct: 184 LNYTDADMKKSTAIVLGMEGSGIAPEALQFCDHVVRIPMAGCVESLNVSVTAGVLLYEAM 243 Query: 278 NHF 280 Sbjct: 244 RQR 246 >gi|296268496|ref|YP_003651128.1| RNA methyltransferase, TrmH family, group 3 [Thermobispora bispora DSM 43833] gi|296091283|gb|ADG87235.1| RNA methyltransferase, TrmH family, group 3 [Thermobispora bispora DSM 43833] Length = 322 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 111/247 (44%), Gaps = 12/247 (4%) Query: 45 QPENLFLYGVHTVSAALNN--PSRKIFQLL-ATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + G + V AL P+R ++ + R P+ V + Sbjct: 71 EEGAEIIAGRNPVVEALRADIPARVLYVAYRIDTDDRVREAIKIAADRDIPMVEVSRDRL 130 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSA 154 D++ G AVHQG+ LE P D L++ LD V DP N+GAI RSA Sbjct: 131 DQLTG-GAVHQGIGLEIPPYEYAHPDDLVEAAHQAGEVPLIVALDGVTDPRNLGAIARSA 189 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AF GI+ R S ++ K+++G L +P R SNLT L+ G +GL Sbjct: 190 AAFGAHGIVVPSRRSVGVTSGAWKTSAGTLATLPVARASNLTQTLKAYRKEGLFVVGLDG 249 Query: 215 DSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D+K+ + + + L++G+EGKGL +ET +A + M +++LN AA +AL Sbjct: 250 DAKEEIADNTLLTEPLVLVVGSEGKGLSRLVRETCDMLARIPMGERVESLNAGVAAGIAL 309 Query: 274 YITQNHF 280 Y Sbjct: 310 YEIARRR 316 >gi|269126376|ref|YP_003299746.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM 43183] gi|268311334|gb|ACY97708.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM 43183] Length = 289 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 53/263 (20%), Positives = 98/263 (37%), Gaps = 9/263 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 K + +++ + G V AL P + +L T A +R Sbjct: 10 RSPRVKSARRLAKRT-FRHRERRFLAEGPQAVREALGLPG-VLTELFTTAEAESRHAELV 67 Query: 86 NLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 PV V + + ++ L + T +S L+ VL HV D Sbjct: 68 TAAERAGVPVLRVSGEVMAELAQTVTPQGLLGVCTFVDVSLADALSPPPTLVTVLAHVRD 127 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N G +LR+A A CD ++ T + ++++G+L H+P + + + + Sbjct: 128 PGNAGTVLRTADAAGCDAVVFTDASVDPYNGKCVRASAGSLFHVPVVAGTRFETLIGALR 187 Query: 204 SWGFQTIGLSSDSKKPLEQEI----KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 G + + L+ + + A + G E GL + + + + G Sbjct: 188 ECGLTVLAADGAGEHTLDAALDGGLLDRPTAWVFGNEAWGLPEEILRAVDHVVRVPIYGR 247 Query: 260 IKALNVSNAAAVALYITQN-HFA 281 ++LN++ AAAV LY + A Sbjct: 248 AESLNLATAAAVCLYASARAQRA 270 >gi|149907739|ref|ZP_01896486.1| hypothetical protein PE36_07617 [Moritella sp. PE36] gi|149809409|gb|EDM69338.1| hypothetical protein PE36_07617 [Moritella sp. PE36] Length = 250 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 + ++G+H V + L + + ++ A K RL + V+ V T+DK Sbjct: 3 SELIFGIHAVKSLLEHEPERFIEVYALKGREDDRLTPLIEELNDIGISVQLVNRNTLDKK 62 Query: 105 VGKEAVHQGLALETAPLLSPT----------LDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 H G+ L+ LL++LD V DPHN+GA LRSA Sbjct: 63 CD-GGRHNGVLARVKEGKKLNESDLDTLLNRLEEKEQHPLLLILDGVTDPHNLGACLRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I K S ++V+ K A GA E +P I ++NL ++++ +G + Sbjct: 122 DAAGVHAVIVPKDKSVQLTSVVRKVACGAAETVPLIAVTNLARTMRELQDRRIWIVGTAG 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + L Q +A+ +GAE KGLR T+E + + M G + +LNVS A + L+ Sbjct: 182 EATQDLYQPKLTGPLAIAMGAEEKGLRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 241 Query: 275 ITQNHF 280 Sbjct: 242 EVVRQR 247 >gi|332307764|ref|YP_004435615.1| RNA methyltransferase, TrmH family, group 3 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175093|gb|AEE24347.1| RNA methyltransferase, TrmH family, group 3 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 246 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 8/244 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTID 102 ++ +LYG+H + A + ++ +L K + + V+ +T+D Sbjct: 2 AQHEWLYGIHALEAVIEREPERLIELFVLKGRDDKPINTIINHARKFGIAVQFCQRKTLD 61 Query: 103 KIVGKEAVH-----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E + + + L+VLD V DPHN+GA LR+A A Sbjct: 62 DKVNGEQHQGVVAKAKPGKQFNENDLDDIIKKSATPFLLVLDGVTDPHNLGACLRTADAA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D I+ K S + + V+ K A GA + IP I+++NL L+++ G +G + ++ Sbjct: 122 GIDAIVVPKDNSVALTPVVRKVACGAADLIPLIQVTNLARTLREIKDAGVWVVGTAGEAT 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + Q IAL++GAEGKG+R T+E + L M G + +LNVS A V LY Sbjct: 182 QSIYQCKMQGPIALVMGAEGKGMRRLTREHCDELIKLPMAGSVSSLNVSVATGVCLYEIV 241 Query: 278 NHFA 281 A Sbjct: 242 RQRA 245 >gi|314937163|ref|ZP_07844510.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis subsp. hominis C80] gi|313655782|gb|EFS19527.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis subsp. hominis C80] Length = 249 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 121/244 (49%), Gaps = 13/244 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 E++ + G H V A+ + I ++ + + D ++TVP +D Sbjct: 2 EDIVIVGRHAVKEAIVSGHT-INKIWIQEGIRKQQINDILKNAKAQKLIIQTVPKSKLDN 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156 + A HQG+A AP D SQ +++LD + DPHN+G+I+R+A A Sbjct: 61 LA--NAPHQGVAALIAPYEYADFDQFIQSQKEKEGLSTIIILDGLEDPHNLGSIIRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DGI+ KR S + + +AK+++GA++H+P +R++NL+ + ++ G+ G +D+ Sbjct: 119 SGVDGIVIPKRRSVALTQTVAKASTGAIQHVPVMRVTNLSKIIDELKDNGYWVAGAEADN 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +A+++G+EG+G+ ++ + M G + +LN S AA++ +Y Sbjct: 179 ATDYRNMAADMPLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNASVAASLMMYEV 238 Query: 277 QNHF 280 Sbjct: 239 YRKR 242 >gi|296136581|ref|YP_003643823.1| RNA methyltransferase, TrmH family, group 3 [Thiomonas intermedia K12] gi|295796703|gb|ADG31493.1| RNA methyltransferase, TrmH family, group 3 [Thiomonas intermedia K12] Length = 242 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 109/237 (45%), Gaps = 7/237 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 LYG H V A L + + ++A + +KT+ + + + G Sbjct: 4 LYGFHAVGARLRAAPASVHAVYVDASRRDARMQQFLRKVEASGVELKTLSAERLTALAGT 63 Query: 108 EAVH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + Q L T + LDAV + L++ LD V DPHN+GAILR+A A +I Sbjct: 64 DRHQGVVAQVDDLPTVHDVHAVLDAVEGAPLVLALDGVTDPHNLGAILRTADAAGVHLVI 123 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + + +A+ ASGA E +PY+ ++NL +L ++ G +G + + Sbjct: 124 APKDRAVGLNPTVARVASGAAETVPYLMVTNLVRSLGELQDRGLWVMGTDEAATDDVYAA 183 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L++GAEG G+R +ET + + M G +++LNVS AA V LY Sbjct: 184 KWTQPAVLVMGAEGAGMRRLVRETCDQLLQIPMLGAVESLNVSVAAGVCLYEAVRQR 240 >gi|237809345|ref|YP_002893785.1| RNA methyltransferase, TrmH family, group 3 [Tolumonas auensis DSM 9187] gi|237501606|gb|ACQ94199.1| RNA methyltransferase, TrmH family, group 3 [Tolumonas auensis DSM 9187] Length = 245 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 108/242 (44%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 + +YG+HTV A L + + K RL + ++ V +T+D Sbjct: 3 SELIYGIHTVKALLEQAPERFLEAWVLKGRDDDRLQPLLAILQQYGVSIQYVQRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A+HQG+ + +VLD V DPHN+GA LR+A A Sbjct: 63 A-EGAIHQGIIARVREGRKLDESDLDKILEKEQTPFFLVLDGVTDPHNLGACLRTADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I + S S + K A GA E +P+I+++NL L+++ G +G + ++ Sbjct: 122 VHALIVPRDKSVSLTGTARKVACGAAESVPFIQVTNLARTLRELKERGVWVVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +AL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 182 DVFAAKLTGSLALVMGAEGDGMRRLTREHCDELISIPMAGAVSSLNVSVATGVCLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|16077164|ref|NP_387977.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168] gi|221307908|ref|ZP_03589755.1| hypothetical protein Bsubs1_00500 [Bacillus subtilis subsp. subtilis str. 168] gi|221312229|ref|ZP_03594034.1| hypothetical protein BsubsN3_00495 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317163|ref|ZP_03598457.1| hypothetical protein BsubsJ_00500 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321426|ref|ZP_03602720.1| hypothetical protein BsubsS_00500 [Bacillus subtilis subsp. subtilis str. SMY] gi|586908|sp|Q06753|YACO_BACSU RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase YacO gi|467483|dbj|BAA05329.1| unknown [Bacillus subtilis] gi|2632363|emb|CAB11872.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168] Length = 249 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 120/246 (48%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102 ++ ++ G + V L + RK+++L +N + + ++ VP + +D Sbjct: 3 QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V HQG+ + A LD ++LD + DPHN+G+I+R+A Sbjct: 62 QMV--TGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ KR + + +AK+++GA+EHIP R++NL L++M G +G + Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDAS 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +++ N +AL++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 180 AREDFRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239 Query: 276 TQNHFA 281 Sbjct: 240 VYRKRN 245 >gi|323483931|ref|ZP_08089306.1| hypothetical protein HMPREF9474_01055 [Clostridium symbiosum WAL-14163] gi|323693473|ref|ZP_08107682.1| RNA methyltransferase [Clostridium symbiosum WAL-14673] gi|323402769|gb|EGA95092.1| hypothetical protein HMPREF9474_01055 [Clostridium symbiosum WAL-14163] gi|323502480|gb|EGB18333.1| RNA methyltransferase [Clostridium symbiosum WAL-14673] Length = 246 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 53/239 (22%), Positives = 104/239 (43%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K+F L ++ + + V + +D++ + Sbjct: 8 IEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVKTITREARKQDTIINYVAKERLDQLS-ET 66 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ A ++ + L +LD + DPHN+GAI+R+A G Sbjct: 67 GKHQGVIAFAAAYKYAEVEDILELAREKGEPPFLFILDGIEDPHNLGAIIRTANQAGAHG 126 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR + ++ +AK+++GA+ + P +++N++ ++++ G + + Sbjct: 127 VIIPKRRAVGLTSTVAKTSAGAINYTPVAKVTNISATIEELKEKGLWFVCADMGGELMYR 186 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G+EG G+ +E +A + M G I +LN S AA V Y Sbjct: 187 MN-LKGPIGLVIGSEGDGVSRLVKEKCDYIASIPMKGDIDSLNASVAAGVLAYEIVRQR 244 >gi|138893766|ref|YP_001124219.1| 23S rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196251123|ref|ZP_03149802.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. G11MC16] gi|134265279|gb|ABO65474.1| 23S rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196209364|gb|EDY04144.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. G11MC16] Length = 246 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 13/243 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 ++ G + V AL + R I ++ + A D V+ VP + +D++ Sbjct: 2 MEYIIGRNPVIEALKSG-RDINKIWIAEGAHRHAVEPVLDWAKRRGVIVQYVPKRKLDQM 60 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 E HQG+ + A +D + +VLD + DPHN+GAI+R+A A Sbjct: 61 A--EGAHQGVIAQVAAYRYYEVDDLFARAAERGEAPFFLVLDELEDPHNLGAIMRTADAV 118 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR S + +AK+++GA+EHIP R++NL + ++ G G + +K Sbjct: 119 GAHGVIIPKRRSVGLTPTVAKASTGAIEHIPVARVTNLARTIDELKERGVWVAGTDAAAK 178 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 179 DDYRSLDGTMPLALVIGSEGKGISRLVLEKCDFLFRLPMRGHVTSLNASVAASLLMYEVY 238 Query: 278 NHF 280 Sbjct: 239 RKR 241 >gi|187478616|ref|YP_786640.1| tRNA/rRNA methyltransferase [Bordetella avium 197N] gi|115423202|emb|CAJ49733.1| putative tRNA/rRNA methyltransferase [Bordetella avium 197N] Length = 246 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 109/238 (45%), Gaps = 7/238 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L G H V A L + I ++ ++ + + V VP + +D + Sbjct: 6 VLAGFHAVVARLRHAPESIKEIYVEASRRDKRMQTLIEQAERAGRRVHPVPVERLDGLAR 65 Query: 107 KEAVHQG----LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + A + LD + L++LD V DPHN+GA LR+A A + Sbjct: 66 GTRHQGVLAVADERQLAVGIDEVLDEIVGPAFLLILDGVTDPHNLGACLRTADAAGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + + ++ + + A GA + +PYI ++NL ++++ G +G + + Sbjct: 126 IAPRDRAVGLNSTVQRVACGAADTVPYITVTNLARTMRELKERGVWLVGTDDQASHDMHA 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A ++GAEG+G+R T+ET + ++ M G +++LNVS A+AV LY T Sbjct: 186 IDARQPMAWVMGAEGEGMRRLTRETCDELVNIPMLGSVESLNVSVASAVCLYETVRQR 243 >gi|228477774|ref|ZP_04062402.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus salivarius SK126] gi|228250466|gb|EEK09680.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus salivarius SK126] Length = 247 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 9/247 (3%) Query: 41 RHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 + T + +YGVH V+ +L K++ + + P + Sbjct: 2 KTTKELSLDIVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAEKKVSISWTPKK 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRS 153 T+ + G AVHQG L + L + L+++LD +NDPHN G+ILR+ Sbjct: 62 TLSDMTG-GAVHQGFVLRVSEFAYSELSVIMDKAEQEENPLVLILDGLNDPHNFGSILRT 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 ADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWVFGTD 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV + Sbjct: 181 MDGTPSHKWNTA-GKVALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLM 239 Query: 274 YITQNHF 280 Y + Sbjct: 240 YEVYRNR 246 >gi|312864040|ref|ZP_07724276.1| RNA methyltransferase, TrmH family [Streptococcus vestibularis F0396] gi|311100453|gb|EFQ58660.1| RNA methyltransferase, TrmH family [Streptococcus vestibularis F0396] Length = 245 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 57/274 (20%), Positives = 110/274 (40%), Gaps = 31/274 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K++ I + K + +H + G H A Sbjct: 1 MEVIQSKQNASIKTAKKL-------------------LQRKHRKTS--YLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + I Q+ + R+ + VK V P+ + ++ + QG+ E A Sbjct: 40 KVSGAH-ILQIFVLEEMADRV------ANMSKVKLVSPEVLKELCETQ-TPQGIVAEVAK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D++ LL+ + V DP N+G ++R+A A DG+ + + + + +S Sbjct: 92 QTQALPDSLSGKYLLL--EDVQDPGNVGTMIRTADAADYDGVFLSDKSADIYNQKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R L S+ + + AL++G EG+G+ Sbjct: 150 QGSHFHLPIYRGPILEMVETCKKQDLPVLATTLSEVSVDYKAVKTDGNFALVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E+A + H++MPG ++LNV+ AA + ++ Sbjct: 210 SKEMAESANQLVHINMPGQAESLNVAVAAGILMF 243 >gi|315221313|ref|ZP_07863236.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus anginosus F0211] gi|315189672|gb|EFU23364.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus anginosus F0211] Length = 242 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 120/242 (49%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YGVH V+ AL N K++ + D + +T+ ++ Sbjct: 2 ENNDIVYGVHAVTEALMTNTGNKLYIQDDLRGKNVAKMKDLAAEKKVSISWTSKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG L + +A+ + LL++LD + DPHN+G+ILR+A A + Sbjct: 62 TD-GAVHQGFVLRVSEFAYTDFEAMLKMAEREENPLLLILDGLTDPHNLGSILRTADATN 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EHIP R++NL+ AL K+ GF G + Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQALDKLKHAGFWIFGTDMNGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 STKWNTA-GKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFR 239 Query: 279 HF 280 + Sbjct: 240 NR 241 >gi|293400417|ref|ZP_06644563.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306817|gb|EFE48060.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 240 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 109/237 (45%), Gaps = 9/237 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG + V L KI+++L + H K +P + +D ++ + Sbjct: 4 YVYGKNVVKQLLQEDK-KIYEILMAEGMRDTALEKLIKEHKITCKILPRKKMDGML--QG 60 Query: 110 VHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+A + + L L ++LD + DPHN+GAILR+ DG+I Sbjct: 61 NHQGIAAKIDDYKTYELLELLESIPKGKMPLFVMLDGLEDPHNLGAILRTCDCVGVDGVI 120 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + + +AK ++GA++ + ++NL +++ + GF +G ++ + + Sbjct: 121 IGKHRNVGLTPTVAKVSTGAIDTVKVAMVTNLAQSIKYLKKQGFWIVGTDFENSRDYREG 180 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +++G+EG G+ ++ L M G++ +LN S A + LY N Sbjct: 181 QYDVPLVIVVGSEGFGISSLVKKNCDYCVRLPMEGVVTSLNASVACGILLYEIYNQR 237 >gi|17546138|ref|NP_519540.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000] gi|17428434|emb|CAD15121.1| probable trna/rrna methyltransferase protein [Ralstonia solanacearum GMI1000] Length = 259 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 101/258 (39%), Gaps = 8/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLD 82 R++ +K +++ + ++ + L G+H V+A L+ L++ ++ A + Sbjct: 6 SRDNAVFKHLKALSGSTQQRRRAGQSVLDGIHLVAAYLDAGHVPAQCLVSERHLAHPEVA 65 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 P + + ++ V G+ L R ++LD + Sbjct: 66 PLLARVDPQGIVLLADSLFAQLT---TVVNGIDLMALIETPEGHLPHRIEHDCVILDGIQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILR A A + T + + SA ++A GA H+ + ++ Sbjct: 123 DAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNVVEHCTFESVHARL 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 H T + + + N + + G EG G+ + T+ + PG +++ Sbjct: 183 HVPLLATSSHARHAVFDMP---LNKPVGWVFGNEGAGVSEQWLS-VTTPISIPQPGGMES 238 Query: 263 LNVSNAAAVALYITQNHF 280 LNV+ AAA+ L+ Sbjct: 239 LNVAAAAAICLFEAVRQR 256 >gi|189346156|ref|YP_001942685.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium limicola DSM 245] gi|189340303|gb|ACD89706.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium limicola DSM 245] Length = 248 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 112/244 (45%), Gaps = 9/244 (3%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKT--VPPQTI 101 + +YG + V L N I ++ N +L V T + + Sbjct: 4 EQSENVVYGRNAVLELLQNKPDTIEKIYFQFNTSHPKLKEILITARRQKVVTGKARLEKL 63 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVA 156 ++I G A HQG+ + + ++D + + LL++L + DPHNIGAI+R+A A Sbjct: 64 NQIAG-TAKHQGICALISTVTFYSIDDILDHPRNSAPLLVILQGLEDPHNIGAIIRTAEA 122 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D ++ + +A + K+++GAL H+ ++ +L ++ +H GF+ D+ Sbjct: 123 AAADAVVLIEGRGAPVNAAVHKASAGALSHMRICKVKSLVRIMEYLHERGFRVYAADMDA 182 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + AL+LGAEG GL P+ + S + + G I++LNVS A + LY Sbjct: 183 ELNYTDADLKGPTALVLGAEGSGLSPEAMKFCGSSVRIPIAGCIESLNVSVTAGILLYEA 242 Query: 277 QNHF 280 Sbjct: 243 MRQR 246 >gi|268317136|ref|YP_003290855.1| RNA methyltransferase, TrmH family, group 3 [Rhodothermus marinus DSM 4252] gi|262334670|gb|ACY48467.1| RNA methyltransferase, TrmH family, group 3 [Rhodothermus marinus DSM 4252] Length = 252 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 117/245 (47%), Gaps = 16/245 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 L G + V AL ++ ++L + A A H PV+ VP +D++ Sbjct: 8 LVGRNPVREALEQEETRVEKVLLQEGAGGPALEAIRRAARAHGVPVQMVPKARLDRLAA- 66 Query: 108 EAVHQGLALETAPLLSPTLDA------------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 AVHQG+ AP+ TL+ LL+ LD + DPHN GAILR+A Sbjct: 67 GAVHQGVVAFVAPVRYRTLEELLDEVAPSPEAVRERLPLLVALDQIEDPHNYGAILRTAA 126 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G++ + + +A K+++GA IP R++NLT AL+ + + GF G S Sbjct: 127 AAGVAGVLVPRHHMAPLNAAALKASAGAALRIPIARVTNLTRALESLKAHGFWVAGASPS 186 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + + + + L+LG EG+GLRP + + + + G +++LNVS AA + L+ Sbjct: 187 GEVSVWEMDWHRPLVLVLGNEGRGLRPGVAQACDLLVSIPLRGPVESLNVSVAAGILLFA 246 Query: 276 TQNHF 280 Sbjct: 247 ATRTR 251 >gi|228967659|ref|ZP_04128680.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar sotto str. T04001] gi|228792035|gb|EEM39616.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar sotto str. T04001] Length = 265 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 98/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKAG--IVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ +P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFRLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|167035924|ref|YP_001671155.1| RNA methyltransferase [Pseudomonas putida GB-1] gi|166862412|gb|ABZ00820.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida GB-1] Length = 248 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 76/240 (31%), Positives = 121/240 (50%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ ++ RL+ L + PV + +D V Sbjct: 7 IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERRELDAWV-- 64 Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P L+ L++VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + V+ K A GA E IP + ++NL L+K+ G +G + ++++ + Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPLVVIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244 >gi|33151509|ref|NP_872862.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus ducreyi 35000HP] gi|52783301|sp|Q7VP36|RLMB_HAEDU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|33147729|gb|AAP95251.1| putative tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP] Length = 246 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 109/238 (45%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107 +YG+H V+A L N ++ ++ K RL+ + V+ V QT+D Sbjct: 5 IYGIHAVNAFLANAPERLIEVFVLKGREDKRLNPLLDELQRLSISVQQVNRQTLDNKAQG 64 Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E +A D +++ LL++LD V DPHN+GA LR+A A D + Sbjct: 65 EVHQGIIARIIPQKELNEYDLNELLQHKSNPLLLILDGVTDPHNLGACLRTADAAGVDAV 124 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLE 221 I K S + +A+ K A GA E +P IR++N + +G + ++ + Sbjct: 125 IVPKDKSATLTAIARKVACGAAEAMPLIRVTNLARTMRELQDKHQIWIVGTAGEATTDIY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 IAL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 185 TSQLTGAIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVRQ 242 >gi|58337786|ref|YP_194371.1| rRNA methylase [Lactobacillus acidophilus NCFM] gi|227904436|ref|ZP_04022241.1| RNA methyltransferase [Lactobacillus acidophilus ATCC 4796] gi|58255103|gb|AAV43340.1| rRNA methylase [Lactobacillus acidophilus NCFM] gi|227867811|gb|EEJ75232.1| RNA methyltransferase [Lactobacillus acidophilus ATCC 4796] Length = 255 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 102/252 (40%), Gaps = 4/252 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ KK+ NQK ++ + + G H A+ + + +L T+ AL +++ D Sbjct: 8 NNATIKKLAKLNQK-KYRDDEGSYLIEGFHLFEEAIKAGKKYQY-ILGTEEALDKVNEDY 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 NL + + I + + Q + + +L+ D++ DP Sbjct: 66 NLELDGKNVILINKAIARHLSSTKNSQEIFMVLKIDQPREFPFNYGKWVLL--DNLADPG 123 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A DG++ + + + ++ G+ HI I+ + Sbjct: 124 NVGTIIRTADAAGFDGVVLSSESADLYNPKTQRAMQGSQFHIELIKRDLADAITDFQDAA 183 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + S K L+ K ++ALI+G E G+ + ++ + G ++LN Sbjct: 184 IPVYASMLDKSAKQLQDFEKVPQLALIIGNEAHGVSSTIASLSDEKLYIPIKGKAESLNA 243 Query: 266 SNAAAVALYITQ 277 + AA + +Y Sbjct: 244 AVAAGIMIYHFA 255 >gi|297587634|ref|ZP_06946278.1| RNA methyltransferase [Finegoldia magna ATCC 53516] gi|297574323|gb|EFH93043.1| RNA methyltransferase [Finegoldia magna ATCC 53516] Length = 244 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 103/240 (42%), Gaps = 10/240 (4%) Query: 50 FLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +L G + V AL I+ + V+ V + I+K Sbjct: 3 YLVGRNPVMEALEMDMGVTNIYIQKGELKGFIKKIEKKAYDMGIRVEYVDKKYIEKFAEN 62 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A HQG+ + ++D + L++LD + DPHN+G+I+R+A C Sbjct: 63 TA-HQGVMAKMPSFGYSSVDEMIIYAKKINEDPFLIILDEITDPHNLGSIIRTAEVAGCH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + +A K+++GA+ +I R++N+T + + G ++ + Sbjct: 122 GVIIPKHRACEVNATAIKTSAGAVFNIKIARVTNITTTINYLKEHNIWIYGACGEASQTH 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q I L++G EGKG+ +E + + M G ++LN SNAA++ +Y Sbjct: 182 TQANLKGPIGLVIGNEGKGISRLVRENCDQLIKIPMYGKTESLNASNAASILIYEIIRQR 241 >gi|227498595|ref|ZP_03928739.1| RNA methyltransferase [Acidaminococcus sp. D21] gi|226904051|gb|EEH89969.1| RNA methyltransferase [Acidaminococcus sp. D21] Length = 263 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 55/254 (21%), Positives = 94/254 (37%), Gaps = 5/254 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + KK S QK ++ + + GV V + + S + T L Sbjct: 9 QNETVKKAASLQQK-KYRLREGLFLVEGVRAVRE-VRSSSWTVTAYFFTD--LPEDFQKE 64 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 P V + K+ E LA L++VLD ++DP Sbjct: 65 AQGSDIPYYEVTGDIMKKLTATEEPQS-LAALVRLKERSLETVHPERGLILVLDEIHDPG 123 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ++R+A A + G+I + + + ++A G L HIP + Sbjct: 124 NVGTMIRTARAMNAQGVILLSGSADLYNPKVVRAAMGNLFHIPVFTGITEDALMTFAQKA 183 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G+ + + D L K LI+G+E +G+ E + + + M G ++LNV Sbjct: 184 GWTLVATALDGAADLRDFTYPQKTLLIMGSEAEGVSHSLLEKSAARVKIPMLGEAESLNV 243 Query: 266 SNAAAVALYITQNH 279 AA + LY Sbjct: 244 GVAAGILLYEAMVQ 257 >gi|254362632|ref|ZP_04978721.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia haemolytica PHL213] gi|153094246|gb|EDN75117.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia haemolytica PHL213] Length = 247 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 109/238 (45%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A L+N ++ ++L K RL N ++ V QT+D Sbjct: 5 IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLMPLLNELQRLGVAIQQVNRQTLDNKSQG 64 Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E +A D + + + LL++LD V DPHN+GA LR+A A D + Sbjct: 65 EVHQGIIARVVPQKELNEHDLEAILSQKKNPLLLILDGVTDPHNLGACLRTADAAGVDAV 124 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LE 221 I K S + K A GA E +P IR++NL ++ + I ++ + + Sbjct: 125 IVPKDKSAQLTPTARKVACGAAEVMPLIRVTNLARTMRDLQERHNVWIVGTAGEAESGIY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + IAL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 185 EAKLTGSIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 242 >gi|86143959|ref|ZP_01062327.1| putative tRNA:rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] gi|85829666|gb|EAQ48129.1| putative tRNA:rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] Length = 245 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 102/241 (42%), Gaps = 11/241 (4%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG + A+ KI+ N L++ V VP + + K+ + Sbjct: 7 IYGTRAIIEAIQAGKEIGKIYLQKGLSNPLSKELEKLIREQGISVSYVPQEKLYKLSDQ- 65 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG +P+ +A L ++LD + D N GAI+R+AV D Sbjct: 66 -NHQGAIATISPIQFAEFEATAEAVLAASKPGLFLLLDQLTDVRNFGAIIRTAVCTGVDA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II K + K+++GA+ +IP ++ ++ DAL + G Q + + ++ + Sbjct: 125 IIIPKSGGAPVTDDTVKTSAGAIFNIPICKVDHIKDALFYLQGSGVQVVAATEKTEDSIY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 AL++G+EGKG+ P + A L M G I +LNVS A LY Sbjct: 185 DLDYTTPTALVMGSEGKGVTPGVLKLVDHKAKLPMAGTISSLNVSVACGAFLYEVVRQRI 244 Query: 282 K 282 K Sbjct: 245 K 245 >gi|311070743|ref|YP_003975666.1| 23S rRNA methyltransferase [Bacillus atrophaeus 1942] gi|310871260|gb|ADP34735.1| 23S rRNA methyltransferase [Bacillus atrophaeus 1942] Length = 249 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 121/246 (49%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102 ++ ++ G + V L + R++++L +N + + ++ VP + +D Sbjct: 3 QQHDYVIGKNAVIETLKSD-RELYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V HQG+ + A LD +VLD + DPHN+G+I+R+A Sbjct: 62 QMVS--GQHQGIVAQVAAYEYAELDDLYKRAEEKNEQPFFLVLDELEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ KR + + +AK+++GA+EHIP ++++NL L++M G +G + Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTNLARTLEEMKERGIWVVGTDAS 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +++ +AL++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 180 AREDYRTMDGTMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239 Query: 276 TQNHFA 281 + Sbjct: 240 IYRKRS 245 >gi|229019786|ref|ZP_04176589.1| RNA methyltransferase, TrmH [Bacillus cereus AH1273] gi|229026013|ref|ZP_04182397.1| RNA methyltransferase, TrmH [Bacillus cereus AH1272] gi|228735294|gb|EEL85905.1| RNA methyltransferase, TrmH [Bacillus cereus AH1272] gi|228741511|gb|EEL91708.1| RNA methyltransferase, TrmH [Bacillus cereus AH1273] Length = 265 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 98/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ +P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFRLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGSGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|222530011|ref|YP_002573893.1| TrmH family group 3 RNA methyltransferase [Caldicellulosiruptor bescii DSM 6725] gi|222456858|gb|ACM61120.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor bescii DSM 6725] Length = 253 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 104/242 (42%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL + + KI ++ + +A + D + VK V I K+ + Sbjct: 4 IEGKNPVKEALKSGA-KITEVYISNSAKDKETAQIIDLCRQNGVVVKFVDKHKIYKMA-Q 61 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+ +D + L++LD + DP N G+I+RSA Sbjct: 62 TKNPQGVIAIAHEFEYCDIDDILFEAKKSGEEPFLVLLDGITDPQNFGSIIRSAHLCGVH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ R S + + K+++GA+E++ R+ NL ++++ G ++ KP+ Sbjct: 122 GIVIETRNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFAADANGSKPV 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G+EGKG+ +E A + + G + + N S AA + + Sbjct: 182 YECDFTIPTCVVIGSEGKGITRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQR 241 Query: 281 AK 282 K Sbjct: 242 LK 243 >gi|307946264|ref|ZP_07661599.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Roseibium sp. TrichSKD4] gi|307769928|gb|EFO29154.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Roseibium sp. TrichSKD4] Length = 277 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 108/275 (39%), Positives = 166/275 (60%), Gaps = 8/275 (2%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHT----SQPENLFLYGVHTVSAALNN 63 ++ K K S + R++ K+ + +K + LYG+HTV AA N Sbjct: 3 ENTKSAGSKRSGPHRPSRDN---KRAGKWTKKPAPRCPGLPPEGPILLYGLHTVEAAFAN 59 Query: 64 PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 RK +L AT+NA RL ++ P++T+ P+ +DK+V ++AVHQG+ LE PL + Sbjct: 60 TERKRMKLYATENAQRRLAER-DVVVDVPIETLAPRALDKMVTRDAVHQGVILEADPLPA 118 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + ++ ++L++ LD V DPHN+GAILRSAVA D ++TT+R++P E VLAKSASGA Sbjct: 119 YGPEHLKGARLVLALDQVTDPHNVGAILRSAVALDADAVVTTERHAPEEGPVLAKSASGA 178 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 L+ I ++R+ N+ + +M F + L SD LE+ K L+LG+EGKG+R Sbjct: 179 LDMIKHVRVKNMARFVSEMQEQAFTAVALDSDGPASLEETELAPKTVLVLGSEGKGVRQG 238 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +E +++A L MPG I++LNVSNAA +ALY+ + Sbjct: 239 VREACSTLARLDMPGEIRSLNVSNAAVLALYVARQ 273 >gi|225850140|ref|YP_002730374.1| RNA methyltransferase, TrmH family, group 3 [Persephonella marina EX-H1] gi|225646622|gb|ACO04808.1| RNA methyltransferase, TrmH family, group 3 [Persephonella marina EX-H1] Length = 242 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 105/238 (44%), Gaps = 5/238 (2%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + ++G + V AL + ++A + L + ++ VP + I++ Sbjct: 2 EDKFVIWGRNPVIEALRSGKELEKIMVAHDSHLPKELVKLAEKRKVKIQRVPRKKIEETA 61 Query: 106 GKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 G + + + + + + ++LDH+ DP N+G I+R+A G Sbjct: 62 GTKKTQGVVALLSPVSYWDPDALIEHIIEKNGFGVILDHITDPQNVGNIIRTAEVLGSSG 121 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + S + V+ K+++GA+ ++P ++ N+ + K G + KP+ Sbjct: 122 IIVPRERSSPINEVVVKASTGAVFYLPIAKVGNIRQFIDKFKKRGGW-VISVEKGGKPIH 180 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + ++LG+EGKG+ E + + + M G I +LNVS AAA++L+ Sbjct: 181 KVSFPFPALIVLGSEGKGVSKTVLENSDMIVSIPMFGKITSLNVSAAAAISLWEVSKQ 238 >gi|325265987|ref|ZP_08132673.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella denitrificans ATCC 33394] gi|324982625|gb|EGC18251.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella denitrificans ATCC 33394] Length = 248 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 112/244 (45%), Gaps = 9/244 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102 +YG H ++A L + I +L +N A R + V + Sbjct: 2 SNQRLIYGFHAINARLWQNPKSITELYVLENKNDARTREVLEKAAAERVRVHFANADRLH 61 Query: 103 KIVGKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + K A HQG+ L L+ +R L+VLD + DPHN+GA LR+A A Sbjct: 62 AMS-KGARHQGVIGFIDASKNHVHLEDVLENLREPAFLLVLDGITDPHNLGACLRTADAM 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K S +A ++K A GA E +PYI ++NL L+++ +G +G Sbjct: 121 GVHAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMGGD 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L + +A ++G EG+G+R T+E ++ + M G ++++N+S +A + L T+ Sbjct: 181 ADLFHYDIPESVAWVMGNEGEGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVLAETR 240 Query: 278 NHFA 281 Sbjct: 241 RQRI 244 >gi|86130703|ref|ZP_01049303.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|85819378|gb|EAQ40537.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 261 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 91/256 (35%), Gaps = 3/256 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K++ +KSR + + G + A+ I ++ + +A + Sbjct: 9 QNPTVKRLLQLQEKSRTRKKEGGFIIEGKREIELAI-AGGYTITEVYYDEQLIAPSSVEE 67 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + + ++ + K+ + +A A + + + + L++V + P Sbjct: 68 LVGTKISLTSLATEVYKKVAYRGGTEGVIAFAKAKKTTLSELQLPVNPLILVTEAPEKPG 127 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIGA+LR+A A + + +S I + + + + Sbjct: 128 NIGALLRTADAAA-VDAVIIANPKTDLYNPNIIRSSVGCVFTTQIATGSTEEVISFLQEK 186 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + A+++G E GL P+ + T + + M G I ++NV Sbjct: 187 DVAIYSAILQKAVDYATQAYTGGSAIVVGTEATGLSPEWR-TVGTNIKIPMRGKIDSMNV 245 Query: 266 SNAAAVALYITQNHFA 281 S AA + ++ + + Sbjct: 246 SVAAGILIFEARRQRS 261 >gi|317402744|gb|EFV83291.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Achromobacter xylosoxidans C54] Length = 245 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 7/238 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L G H V A L + I ++ ++ + + + V + +D + Sbjct: 6 VLAGFHAVVARLRHAPESIKEIYVEASRRDKRMQTFIEQAERAGCRLHPVAMERLDGLAR 65 Query: 107 KEAVHQG----LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + A + LD + LL++LD V DPHN+GA LR+A A + Sbjct: 66 GTRHQGVVALADERQLAVDVDEVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + + ++ + + A GA + +PY+ ++NL ++ + G +G + + + Sbjct: 126 IAPRDRAVGLNSTVQRVACGAADTVPYLMVTNLARTMRSLKDRGVWLVGTDDQATDSMHR 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A ++GAEG+G+R T+ET + ++ M G +++LNVS A+AV LY T Sbjct: 186 IDARQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYETVRQR 243 >gi|301169579|emb|CBW29180.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae 10810] Length = 246 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAMA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL+ + +G + ++ + + Sbjct: 124 VIAPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIARQR 243 >gi|206977720|ref|ZP_03238611.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97] gi|229141289|ref|ZP_04269827.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26] gi|229198712|ref|ZP_04325410.1| RNA methyltransferase, TrmH [Bacillus cereus m1293] gi|206744021|gb|EDZ55437.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97] gi|228584734|gb|EEK42854.1| RNA methyltransferase, TrmH [Bacillus cereus m1293] gi|228642070|gb|EEK98363.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26] Length = 265 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 108 EKEVALADGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKTDRNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|217962043|ref|YP_002340613.1| RNA methyltransferase, TrmH family [Bacillus cereus AH187] gi|222098026|ref|YP_002532083.1| 23S rRNA methyltransferase [Bacillus cereus Q1] gi|217063206|gb|ACJ77456.1| RNA methyltransferase, TrmH family [Bacillus cereus AH187] gi|221242084|gb|ACM14794.1| 23S rRNA methyltransferase [Bacillus cereus Q1] Length = 254 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 1 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 42 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 97 EKEVALADGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 153 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 212 RQEILAKTDRNLYIPIYGGAESLNVAVAAGILTYYLQ 248 >gi|189460114|ref|ZP_03008899.1| hypothetical protein BACCOP_00750 [Bacteroides coprocola DSM 17136] gi|189433156|gb|EDV02141.1| hypothetical protein BACCOP_00750 [Bacteroides coprocola DSM 17136] Length = 250 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 108/244 (44%), Gaps = 11/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 +N ++GV V A+ K+ ++ L++ + PV+ VP + I++ Sbjct: 3 EKNEMIFGVRAVIEAIQAGKEIDKVLVKKDIQSDLSKELFAVLKETFIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I + HQG+ +P+ L + LL++LD + D N GAI R+ Sbjct: 63 IT--KKNHQGVVAFISPITYQRTEDIVPFLFEQGKNPLLIMLDGLTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II + S S +A K+++GAL IP R +NLT+ ++ + GF+ + + Sbjct: 121 AGVDAIIIPSKNSVSVNADAIKTSAGALHTIPVCRENNLTNTIKFLKDSGFKIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + D +I+GAE G+ + + + G I++LNVS AA + +Y Sbjct: 181 DYDYTKATYTDPTCIIMGAEDTGVPYEHLALCDEWIKIPLFGSIESLNVSVAAGILIYEA 240 Query: 277 QNHF 280 Sbjct: 241 VKQR 244 >gi|313893388|ref|ZP_07826960.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158 str. F0412] gi|313442029|gb|EFR60449.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158 str. F0412] Length = 264 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 101/282 (35%), Gaps = 22/282 (7%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS-- 58 M I K +++ K + + Q+ ++ + + G+ ++ Sbjct: 1 MEFIQSK------------------DNKTIKHIIALGQR-KNRQKSGEYIVEGIRSIRDI 41 Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 AA+ + + ++ + V DKI QG+ Sbjct: 42 AAMGAVKTVVIRESKAQDKNVLDLLTLDSAQSAHTYIVQDPVFDKI-DNTVNGQGVVAIV 100 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + L + LD V DP N+G I+R+AVA GI K + + Sbjct: 101 SKPKHNIESVSIEDGLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVR 160 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 S AL IP L+ + T + ++ +P + L+LG EG Sbjct: 161 STMSALHKIPLYEDITLSMLHDIVAESNMTTYVTALENSEPYHSVNYAKRTMLVLGNEGN 220 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G+ P+ T+ + M G +++LNVS AAA+ +Y Q Sbjct: 221 GVTPEVMNLCTNRIMIPMYGDMESLNVSVAAALCMYKVQEQL 262 >gi|228960830|ref|ZP_04122465.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pakistani str. T13001] gi|229048269|ref|ZP_04193837.1| RNA methyltransferase, TrmH [Bacillus cereus AH676] gi|229112026|ref|ZP_04241569.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15] gi|229129845|ref|ZP_04258811.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4] gi|229147120|ref|ZP_04275479.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24] gi|228636369|gb|EEK92840.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24] gi|228653536|gb|EEL09408.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4] gi|228671349|gb|EEL26650.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15] gi|228722994|gb|EEL74371.1| RNA methyltransferase, TrmH [Bacillus cereus AH676] gi|228798852|gb|EEM45831.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pakistani str. T13001] Length = 265 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKTG--IVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|225159254|ref|ZP_03725555.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] gi|224802151|gb|EEG20422.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] Length = 289 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 98/292 (33%), Gaps = 32/292 (10%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I SL+ + K++ + R + + G + AL R I Sbjct: 5 ERITSLQ----------NPRVKQLVKLRDR-RPRDEAGVFLVEGYRQIRRALEKNVR-IN 52 Query: 70 QLLATKNALARLDW----DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL--- 122 +L + + + D V + K+ +E LA+ Sbjct: 53 ELYFSSDWFLGENEPALIDQAAAAGAQVIELSKDAFAKVAYRERPDGLLAVAPQWRHSLA 112 Query: 123 ------------SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 P D + L+V++ + P N+G ILRSA A D +I Sbjct: 113 DLAARLDAPPLSPPAADRSERAPFLLVVEAIEKPGNLGTILRSADAAGVDALIVC-DPVT 171 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 AS + + ++ + + + G +++ + + +A Sbjct: 172 DLFNPNVVRASTGVLFSVPVIVAGSGEVREWLRERGIRSVATTPSATTLHTDSDLRGPLA 231 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +++G+E GL A + + M G +LNV+ A + L+ ++ Sbjct: 232 IVMGSEQYGLSDYWLAEADARVRIPMAGQADSLNVAMATIITLFEAVRQRSE 283 >gi|30022637|ref|NP_834268.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579] gi|296505037|ref|YP_003666737.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171] gi|29898195|gb|AAP11469.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579] gi|296326089|gb|ADH09017.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171] Length = 254 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 1 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 42 LKTG--IVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 97 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 153 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 212 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248 >gi|90425125|ref|YP_533495.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris BisB18] gi|90107139|gb|ABD89176.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris BisB18] Length = 275 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 122/262 (46%), Positives = 163/262 (62%), Gaps = 1/262 (0%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72 F K K ++ R+ K+ + R + LYG HTV AAL NP R I +LL Sbjct: 4 FERKPRFGRKPDKSSRNPKEAGRQPWRDRESRPDGPAILYGWHTVVAALGNPQRTIRKLL 63 Query: 73 ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132 ++NA RL D N+ P + V P ID+ +G +AVHQGL E PL P LD + Sbjct: 64 LSENAARRLA-DENIDTRVPPEIVRPSLIDQRLGPDAVHQGLLAEADPLEPPELDTLPQQ 122 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +++VLD + DPHN+GAILRSA AF+ I+TT R+SP + VLAKSASGALE +P + + Sbjct: 123 GIVLVLDQITDPHNVGAILRSAAAFAVKAIVTTARHSPEATGVLAKSASGALELVPMVTV 182 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NL AL ++ GFQT+GL S+ L + +AL+LGAEGKGLR T++T +++A Sbjct: 183 QNLARALTDLNDRGFQTVGLDSEGGDDLATIPLSAPLALVLGAEGKGLRQLTRQTCSALA 242 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 L MPG IK+LNVSNAAA+ALY Sbjct: 243 RLDMPGEIKSLNVSNAAALALY 264 >gi|260779505|ref|ZP_05888395.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio coralliilyticus ATCC BAA-450] gi|260604314|gb|EEX30618.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio coralliilyticus ATCC BAA-450] Length = 245 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLAKEPERFVEAFVLKGRQDDRLMPILNELQMCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQG+ + P + A ++ LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-RGANHQGIMAKVKPAKQLNENDLDDILAQHSAPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSANITATVSKVACGAAETVPLVRVTNLARTMRALQEQGIWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ V L+ Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|297565069|ref|YP_003684041.1| tRNA/rRNA methyltransferase SpoU [Meiothermus silvanus DSM 9946] gi|296849518|gb|ADH62533.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus silvanus DSM 9946] Length = 274 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 88/257 (34%), Gaps = 6/257 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K++ ++ +H + G + AL L+ Sbjct: 8 NPRIKELARLLER-KHRDSQRRFLIEGAREIERALQAGIELEQALVWEGGLNPEEQQVYA 66 Query: 87 LPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + V + K+ ++ +AL P + L++V + Sbjct: 67 ALGRVGRLALLEVSEAVLKKLSVRDNPAGLIALARMPERTLEEYRPSPDALILVAVGLEK 126 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GA+LRSA A + ++ V+ S + ++ ++ L + Sbjct: 127 PGNLGAVLRSADAAGAEVVLVAGGVDLYSPQVIRN--STGVVFSLRTLAASESEVLDWIK 184 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + ++ + +A+ +G E +GLR E A + + M G +L Sbjct: 185 QHNLPLVATTPHAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSL 244 Query: 264 NVSNAAAVALYITQNHF 280 NVS +AA+ LY Sbjct: 245 NVSVSAALLLYEALRQR 261 >gi|15603818|ref|NP_246892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pasteurella multocida subsp. multocida str. Pm70] gi|52783323|sp|Q9CJP3|RLMB_PASMU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|12722390|gb|AAK04037.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 245 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 79/240 (32%), Positives = 118/240 (49%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H VSA LNN ++ ++ A K RL N H ++ V QT+DK Sbjct: 5 IYGIHAVSAFLNNAPERLIEVYALKGRDDKRLQPLLNELHRLGITIQFVNRQTLDKKAEG 64 Query: 108 EAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ P TL +++ LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGIMARVQPAKELNEADLDTLLQNQSNPLLLVLDGVTDPHNLGACLRTADAAGVCA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220 +I K S +A+ K A GA E +P IR++NL L+++ + ++ Sbjct: 124 VIVPKDKSAQLTAIARKVACGAAEVVPLIRVTNLARTLRELQQKHNIWVVGTAGEATNTL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQTQLTGGLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|309792162|ref|ZP_07686634.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6] gi|308225703|gb|EFO79459.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6] Length = 284 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 103/273 (37%), Gaps = 10/273 (3%) Query: 12 IFSLKDSHYAKL--RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 IFS K S ++ ++ K ++S R + + + GV V+ AL + Sbjct: 15 IFSAKKSGMRRMISSTHNAHVKYLRSLCADPRERRREQRFVIEGVRLVAHALAVGAELCV 74 Query: 70 QLLATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 L + A A L H P + QG+ A + Sbjct: 75 VLYNPDSLRATPAGSALLEHLLTRPGCFAANEVAISAATDTRTPQGVVAAMAWP-----N 129 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L ++LD + DP N+G +LRSA A ++ + + + ++A GA ++ Sbjct: 130 LAPQPGLGLILDAIQDPGNLGTLLRSAEAAGVGWVVCAPGCADPFAPKVVRAAMGAHFNL 189 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P + D ++ + ++D+ P Q N ALI+G+E GL Sbjct: 190 PLRHDLSWEDIGAEV-ADLPVVYAAAADAAMPYYQADWNQPAALIIGSEAHGLSAAGMAL 248 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 AT + M G ++LN + A +V L+ Sbjct: 249 ATQYLAIPMQGRAESLNAAVAGSVMLFEALRQR 281 >gi|160947201|ref|ZP_02094368.1| hypothetical protein PEPMIC_01134 [Parvimonas micra ATCC 33270] gi|158446335|gb|EDP23330.1| hypothetical protein PEPMIC_01134 [Parvimonas micra ATCC 33270] Length = 254 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 111/243 (45%), Gaps = 12/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104 + +++G + V AL + RK+ ++ K L + + + ++ + Sbjct: 11 SDYIFGRNAVLEALESD-RKVEKIYILKGDLKGSINKIIGKAKANGILISEIDKHKLENM 69 Query: 105 VGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + VHQG+ + T++ L++LD + DPHN GAI+R+ A Sbjct: 70 A-EGVVHQGVCALISSFEYSTVEEILQSAKDKNEDLFLVILDEIEDPHNFGAIIRTCEAV 128 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII +KR ++++ KS++GA+ HI +++N+ D + K+ G +++ Sbjct: 129 GVHGIIVSKRNQAPVTSIVQKSSAGAVNHIKIAKVANIADTILKLQKENVWVYGACGEAE 188 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K IA+++G EGKG+ ++ + L M G + +LN SNA A+ +Y Sbjct: 189 KIYTDMDFKGNIAIVIGNEGKGIGQLIRKRCDFLTKLPMKGKVSSLNASNACAILVYEAL 248 Query: 278 NHF 280 Sbjct: 249 RQR 251 >gi|258620525|ref|ZP_05715563.1| RNA methyltransferase [Vibrio mimicus VM573] gi|258625738|ref|ZP_05720617.1| RNA methyltransferase [Vibrio mimicus VM603] gi|261211153|ref|ZP_05925442.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. RC341] gi|262166619|ref|ZP_06034356.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus VM223] gi|262170465|ref|ZP_06038143.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus MB-451] gi|262401885|ref|ZP_06078450.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. RC586] gi|258581976|gb|EEW06846.1| RNA methyltransferase [Vibrio mimicus VM603] gi|258587404|gb|EEW12115.1| RNA methyltransferase [Vibrio mimicus VM573] gi|260839654|gb|EEX66265.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. RC341] gi|261891541|gb|EEY37527.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus MB-451] gi|262026335|gb|EEY45003.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus VM223] gi|262351857|gb|EEZ00988.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. RC586] Length = 246 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTVPPQTIDKI 104 N +YG+H V+A L + + K RL N ++ + + +D Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL P + A LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A + L+ Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDGLIKIPMAGSVSSLNVSVACGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|257432651|ref|ZP_05609011.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410] gi|257282066|gb|EEV12201.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410] Length = 248 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E+ + G H V A+ +P KI K V+TVP +D + Sbjct: 2 EDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKEQKIIVQTVPKSKLDFL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 62 A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S + + +AK+++GA+EH+P IR++NL + ++ GF G +++ Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239 Query: 278 NHF 280 Sbjct: 240 RKR 242 >gi|313500862|gb|ADR62228.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Pseudomonas putida BIRD-1] Length = 248 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 76/240 (31%), Positives = 120/240 (50%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ ++ RL+ L + PV + +D V Sbjct: 7 IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P L+ L++VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + V+ K A GA E IP + ++NL L+K+ G +G + ++ + + Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADQEI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244 >gi|295690068|ref|YP_003593761.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756] gi|295431971|gb|ADG11143.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756] Length = 263 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 41/251 (16%), Positives = 92/251 (36%), Gaps = 5/251 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDW 83 + K +++ + + + + G+ V A++ + A + Sbjct: 11 NATVKAVRALHMR-KEREESGLFLAEGLKIVIEAIDCGHAPKIVMYGPDAADHPMLKKAV 69 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 A L V V + ++K+ ++ +A+ T ++ + + V D Sbjct: 70 AACLKAGGEVIEVNREILEKVSRRDNPQAVVAVFRQVFTPLTAIVPESAPCWVAMQAVRD 129 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A A C G+I S ++ G++ I + + + L Sbjct: 130 PGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRATMGSIF-AVKIAKATIPEFLAWRE 188 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 +W +G + + +++G E +GL P+ + M G +L Sbjct: 189 TWPGSVVGTLLTATVDHKSADYVKPSLILMGNEQQGLPPELAAACDVNVKIPMRGRADSL 248 Query: 264 NVSNAAAVALY 274 N+S A + +Y Sbjct: 249 NLSVATGIMIY 259 >gi|56478867|ref|YP_160456.1| tRNA/rRNA methyltransferase [Aromatoleum aromaticum EbN1] gi|56314910|emb|CAI09555.1| tRNA/rRNA methyltransferase [Aromatoleum aromaticum EbN1] Length = 261 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 98/259 (37%), Gaps = 8/259 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ K++ + +R L G H V AAL+ + +L+A+ L R + Sbjct: 6 SRDNPAVKRLHALAHSARDRRSEGRTLLDGAHLVRAALDAGW-PLRELVASDQGLGRAEI 64 Query: 84 DANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 L P + + + L L ++ L+VLD V Sbjct: 65 ADLLERCTGVPAIHLTDALFAHVSPVDTP---SGLLAVIDLPVPPPTRAFAESLLVLDGV 121 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 D N+G ILR+A A ++ T + + S + ++ G H + A+ Sbjct: 122 QDAGNLGTILRTAAAAGMRDVLLTPGCAQAWSPRVLRAGMGG--HFCLRLYEHADVAVLL 179 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G + L + +A + GAEG+GL AT + MPG ++ Sbjct: 180 QGYPGQILATGLGAGARGLYEMDLRGTVAWLFGAEGRGLSMAVAALATDTVVIPMPGAVE 239 Query: 262 ALNVSNAAAVALYITQNHF 280 +LNV+ AAAV L+ Sbjct: 240 SLNVAAAAAVCLFEQVRQR 258 >gi|26991558|ref|NP_746983.1| RNA methyltransferase [Pseudomonas putida KT2440] gi|52783313|sp|Q88DE7|RLMB_PSEPK RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|24986644|gb|AAN70447.1|AE016686_1 RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida KT2440] Length = 248 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 76/240 (31%), Positives = 121/240 (50%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ ++ RL+ L + PV + +D V Sbjct: 7 IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P L+ L++VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + V+ K A GA E IP + ++NL L+K+ G +G + ++++ + Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244 >gi|148549961|ref|YP_001270063.1| RNA methyltransferase [Pseudomonas putida F1] gi|148514019|gb|ABQ80879.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida F1] Length = 248 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 76/240 (31%), Positives = 121/240 (50%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ ++ RL+ L + PV + +D V Sbjct: 7 IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P L+ L++VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + V+ K A GA E IP + ++NL L+K+ G +G + ++++ + Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244 >gi|257899917|ref|ZP_05679570.1| RNA methyltransferase TrmH [Enterococcus faecium Com15] gi|257837829|gb|EEV62903.1| RNA methyltransferase TrmH [Enterococcus faecium Com15] Length = 286 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 75/283 (26%), Positives = 129/283 (45%), Gaps = 17/283 (6%) Query: 13 FSLKDSHYAKL----RRNHR-DYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65 + H +K ++ +R KK NQ ++ F++G H AL Sbjct: 3 KERTNKHQSKRGFEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGR 62 Query: 66 -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 K+F ++ + PVK VP Q ++ + VHQG+ L P Sbjct: 63 GNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETLSDH-GVHQGVVLAITPYEYL 121 Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 +LD + ++LD + DPHN G+ILR+A A DG+I K + + ++ Sbjct: 122 SLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVT 181 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA+E++P R++NL A+Q++ GF G + K IAL++G EG Sbjct: 182 KTSTGAVEYVPVARVTNLIQAVQQLKEIGFWVFGTDMTGTNFQKWNAK-GSIALVIGNEG 240 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 KG+ P ++ + + M G +++LN S AA + +Y + Sbjct: 241 KGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283 >gi|69245491|ref|ZP_00603455.1| RNA methyltransferase TrmH, group 3 [Enterococcus faecium DO] gi|258614231|ref|ZP_05712001.1| RNA methyltransferase [Enterococcus faecium DO] gi|260559479|ref|ZP_05831660.1| RNA methyltransferase TrmH [Enterococcus faecium C68] gi|293564126|ref|ZP_06678532.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1162] gi|293570062|ref|ZP_06681142.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1071] gi|294618280|ref|ZP_06697862.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1679] gi|294623062|ref|ZP_06701949.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium U0317] gi|314940061|ref|ZP_07847244.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133a04] gi|314942532|ref|ZP_07849371.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133C] gi|314949362|ref|ZP_07852703.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0082] gi|314952822|ref|ZP_07855794.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133A] gi|314993745|ref|ZP_07859090.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133B] gi|314994810|ref|ZP_07859942.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133a01] gi|68195742|gb|EAN10179.1| RNA methyltransferase TrmH, group 3 [Enterococcus faecium DO] gi|260074578|gb|EEW62899.1| RNA methyltransferase TrmH [Enterococcus faecium C68] gi|291587434|gb|EFF19318.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1071] gi|291595496|gb|EFF26807.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1679] gi|291597535|gb|EFF28699.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium U0317] gi|291604044|gb|EFF33572.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1162] gi|313590994|gb|EFR69839.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133a01] gi|313591845|gb|EFR70690.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133B] gi|313595056|gb|EFR73901.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133A] gi|313598753|gb|EFR77598.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133C] gi|313640661|gb|EFS05241.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133a04] gi|313644193|gb|EFS08773.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0082] Length = 286 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 129/283 (45%), Gaps = 17/283 (6%) Query: 13 FSLKDSHYAKL----RRNHR-DYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65 + H +K ++ +R KK NQ ++ F++G H AL Sbjct: 3 KERTNKHQSKRGFEDKKQNRYSNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGR 62 Query: 66 -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 K+F ++ + PVK VP Q ++ + VHQG+ L P Sbjct: 63 GNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETLSDH-GVHQGVVLAITPYEYL 121 Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 +LD + ++LD + DPHN G+ILR+A A DG+I K + + ++ Sbjct: 122 SLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVT 181 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA+EH+P R++NL A+Q++ GF G + K IAL++G EG Sbjct: 182 KTSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTGTNFQKWNAK-GSIALVIGNEG 240 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 KG+ P ++ + + M G +++LN S AA + +Y + Sbjct: 241 KGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283 >gi|75910610|ref|YP_324906.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413] gi|75704335|gb|ABA24011.1| RNA methyltransferase TrmH, group 3 [Anabaena variabilis ATCC 29413] Length = 327 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 70/252 (27%), Positives = 121/252 (48%), Gaps = 12/252 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKT 95 + + E+ +YG H V +AL N R + ++ T + + + Sbjct: 65 PKVKEENESDIIYGRHPVLSALEN-QRGLNRIWVTPRLRYDPRFHNLILQAKENGAVIDE 123 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGA 149 V P+ +D+I +A HQG+A + AP +++V D + DPHN+GA Sbjct: 124 VEPKRLDQITD-QANHQGIAAQIAPYSYIEFYELIAQAKSVTDPVIIVADGITDPHNLGA 182 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A G++ +R + ++ + K A+GALE+ P R+ NL+ AL+ + GF Sbjct: 183 IIRTAEAIGAQGLVIPQRRASGITSTVVKVAAGALENFPVARVVNLSRALEDLKEAGFWI 242 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G ++ +PL I L++G+EG+GL TQ + + + + G +LN S AA Sbjct: 243 YGTAAGGSEPLHTVSFRGPIVLVIGSEGEGLSMLTQRSCDVLVSIPLMGKTPSLNASVAA 302 Query: 270 AVALYITQNHFA 281 +ALY + Sbjct: 303 GMALYEIFRQRS 314 >gi|145628238|ref|ZP_01784039.1| hypothetical protein CGSHi22121_04335 [Haemophilus influenzae 22.1-21] gi|145638336|ref|ZP_01793946.1| hypothetical protein CGSHiII_06179 [Haemophilus influenzae PittII] gi|144980013|gb|EDJ89672.1| hypothetical protein CGSHi22121_04335 [Haemophilus influenzae 22.1-21] gi|145272665|gb|EDK12572.1| hypothetical protein CGSHiII_06179 [Haemophilus influenzae PittII] gi|309751478|gb|ADO81462.1| 23S rRNA mG2251 methyltransferase [Haemophilus influenzae R2866] Length = 246 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 116/240 (48%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKEFNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL+ H+ +G + ++ + + Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQHNHNIWVVGTAGEATETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|301154986|emb|CBW14449.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus parainfluenzae T3T1] Length = 256 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 71/253 (28%), Positives = 116/253 (45%), Gaps = 11/253 (4%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVK 94 K+ P + +YG+H V++ L N ++ ++ K + + V+ Sbjct: 2 TKNNKQENPMSENIYGIHAVNSILANSPERLIEVFVLKGREDKRLQPLLNELYALGIAVQ 61 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAP------LLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V QT+DK E VHQG+ L + + LL+VLD V DPHN+G Sbjct: 62 FVNRQTLDKKSNGE-VHQGVIARVQEAKELNEHDLDELLTRKQNPLLLVLDGVTDPHNLG 120 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGF 207 A LR+A A +I K S +++ K A GA E +P IR++NL + Sbjct: 121 ACLRTADAAGVSAVIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLARTLRDLQQNHNI 180 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +G + ++ + + Q +AL++GAEG+G+R T+E + + M G + +LNVS Sbjct: 181 WVVGTAGEATETIYQSKLTGSLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSV 240 Query: 268 AAAVALYITQNHF 280 A V L+ Sbjct: 241 ATGVCLFEIVRQR 253 >gi|254801702|sp|B8ZUB0|Y324_MYCLB RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MLBr00324 gi|254801703|sp|Q9CCW4|Y324_MYCLE RecName: Full=Uncharacterized tRNA/rRNA methyltransferase ML0324 Length = 309 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 78/267 (29%), Positives = 122/267 (45%), Gaps = 11/267 (4%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQLLATK-NALA 79 LR NH K+ QS + + L G + V L + ++ L T+ + Sbjct: 43 LRPNHPAAKRNQSSPHRPVKRTDETETVL-GRNPVLECLRAGVPATALYVALGTEVDKRL 101 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQ 133 + VP +D+I +HQG+AL+ P D Sbjct: 102 TESVMRAADVGVAILEVPRTYLDRITNNH-LHQGIALQVPPYHYVHSDDLLAAATDSPPA 160 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+ LD+++DP N+GAI+RS AFS GI+ +R S S +AV ++++GA IP R + Sbjct: 161 LLVALDNISDPRNLGAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIPVARAT 220 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NLT AL+ G + IGL D L+ D +A+++G+EGKGL + + + Sbjct: 221 NLTRALKVWADQGLRVIGLDHDGDTALDDLDGTDPLAVVVGSEGKGLSRLVRHSCDEVVS 280 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 + M G +++LN S A V L Sbjct: 281 IPMAGQVESLNASVAVGVVLAEIARQR 307 >gi|15827088|ref|NP_301351.1| methyltransferase [Mycobacterium leprae TN] gi|221229566|ref|YP_002502982.1| putative methyltransferase [Mycobacterium leprae Br4923] gi|13092636|emb|CAC29832.1| putative methyltransferase [Mycobacterium leprae] gi|219932673|emb|CAR70417.1| putative methyltransferase [Mycobacterium leprae Br4923] Length = 278 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 78/267 (29%), Positives = 122/267 (45%), Gaps = 11/267 (4%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQLLATK-NALA 79 LR NH K+ QS + + L G + V L + ++ L T+ + Sbjct: 12 LRPNHPAAKRNQSSPHRPVKRTDETETVL-GRNPVLECLRAGVPATALYVALGTEVDKRL 70 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQ 133 + VP +D+I +HQG+AL+ P D Sbjct: 71 TESVMRAADVGVAILEVPRTYLDRITNNH-LHQGIALQVPPYHYVHSDDLLAAATDSPPA 129 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+ LD+++DP N+GAI+RS AFS GI+ +R S S +AV ++++GA IP R + Sbjct: 130 LLVALDNISDPRNLGAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIPVARAT 189 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NLT AL+ G + IGL D L+ D +A+++G+EGKGL + + + Sbjct: 190 NLTRALKVWADQGLRVIGLDHDGDTALDDLDGTDPLAVVVGSEGKGLSRLVRHSCDEVVS 249 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 + M G +++LN S A V L Sbjct: 250 IPMAGQVESLNASVAVGVVLAEIARQR 276 >gi|322420271|ref|YP_004199494.1| TrmH family RNA methyltransferase [Geobacter sp. M18] gi|320126658|gb|ADW14218.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M18] Length = 249 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 119/244 (48%), Gaps = 11/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 + +YG++ AL SRKIF+L + + PV+ ++ Sbjct: 2 SKEEIIYGLNPAMEALR-GSRKIFELFVAGTSADKRLEKLLKLAAERKVPVRQREKGDLN 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 ++ G E HQG+AL+ P LD + L++VLD V DPHN+GA++RSA Sbjct: 61 RLCGTE-HHQGVALKVEPFPYADLDDVLEGLQGEGNGLILVLDSVQDPHNLGALIRSAAC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + ++ K + +AV+ K+++GA E + +++N++ AL+ + GF G + Sbjct: 120 AGANAVVIPKDRAAGVTAVVEKASAGATETVAVAQVTNISQALETLKKAGFWIYGADGSA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K L Q+ +AL++G EG+G+RP ++ + + + G + +LN S A + L+ Sbjct: 180 KHTLYQQDFTGPVALVIGGEGEGIRPLVRKGCDEVVSIPLQGGVNSLNASVAGGIFLFEV 239 Query: 277 QNHF 280 Sbjct: 240 VRQR 243 >gi|325263766|ref|ZP_08130499.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. D5] gi|324030804|gb|EGB92086.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. D5] Length = 260 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 107/252 (42%), Gaps = 9/252 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVK 94 N +S + L + G + V A + K+F L ++ R H + Sbjct: 8 NNRSENGQIENTLIIEGRNAVLEAFRSGKPIDKVFILDGCQDGPIRTIVREAKKHDTILN 67 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIG 148 V + + ++ +A A + D + ++LD++ DPHN+G Sbjct: 68 FVEKERLAQLSETGKHQGVIAYAAAYEYAEIEDMFKLAEEKGEDPFFILLDNIEDPHNLG 127 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+R+A G+I KR + +A +AK+++GAL + P +++NL ++++ G Sbjct: 128 AIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKERGLW 187 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + + + I L++G EG+G+ +E +A + M G I +LN S A Sbjct: 188 FVCADMGGESMYKMN-LTGPIGLVVGNEGEGVGRLVKEKCDFVAAIPMKGEIDSLNASVA 246 Query: 269 AAVALYITQNHF 280 A V Y Sbjct: 247 AGVLAYEIVRQR 258 >gi|229158167|ref|ZP_04286235.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342] gi|228625329|gb|EEK82088.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342] Length = 265 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 108 ESEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKTDRNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|163815365|ref|ZP_02206740.1| hypothetical protein COPEUT_01530 [Coprococcus eutactus ATCC 27759] gi|158449339|gb|EDP26334.1| hypothetical protein COPEUT_01530 [Coprococcus eutactus ATCC 27759] Length = 272 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 101/259 (38%), Gaps = 8/259 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLD 82 ++ K + N+ SR + + + G+ P + ++ +++A D Sbjct: 12 SNPKVKMLNKLNKDSRLRRERDVFIVEGIRMFREI---PVDSVDEIYMSESAYAEYCDED 68 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVH-QGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 L + V + + + + + ++ ++LD + Sbjct: 69 DLQELYNAAEVTVMSDSVFAGVSQTKTPQGCMAVVRCFHYEMTDIAGSTDTATYLILDTI 128 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I RSA A G+I + + +S GA+ +P+++ +L + Sbjct: 129 QDPGNMGTIFRSAEAAGITGVIIGPGSCDPYNPKVVRSTMGAIFRVPFVQSDDLIYTIDA 188 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G G D ++ + E DKIA ++G EG GL +TA + + M G ++ Sbjct: 189 LKRKGVLIYGAHLDGEELYDTE-FPDKIAFLIGNEGNGLSKAVSDTADRLLRIPMEGKVE 247 Query: 262 ALNVSNAAAVALYITQNHF 280 +LN + +A + Y Sbjct: 248 SLNAAISATLLSYEAMRQR 266 >gi|154502841|ref|ZP_02039901.1| hypothetical protein RUMGNA_00656 [Ruminococcus gnavus ATCC 29149] gi|153796724|gb|EDN79144.1| hypothetical protein RUMGNA_00656 [Ruminococcus gnavus ATCC 29149] Length = 255 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 59/253 (23%), Positives = 109/253 (43%), Gaps = 11/253 (4%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKT 95 + + L + G + V A + K+F L ++ R H + Sbjct: 4 NRKEFDNTEHTLVIEGRNAVLEAFRSGKPIDKVFVLDGCQDGPVRTIVREAKKHDTIINF 63 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148 V + + +I HQG+ A ++ + L++LD++ DPHN+G Sbjct: 64 VGKERLSQIS-VTGKHQGVIAYAAAYEYSEVEDMLKLAEERGEDPFLILLDNIEDPHNLG 122 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+R+A G+I KR + +A +AK+++GAL + P +++NL ++++ G Sbjct: 123 AIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKEKGLW 182 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + + + + I L++G EG+G+ +E +A + M G I +LN S A Sbjct: 183 FVCA-DMGGESMYRLNLKGPIGLVIGNEGEGVGRLVKEKCDFVASIPMKGEIDSLNASVA 241 Query: 269 AAVALYITQNHFA 281 A V Y Sbjct: 242 AGVLAYEIVRQRT 254 >gi|295838035|ref|ZP_06824968.1| TrmH family RNA methyltransferase [Streptomyces sp. SPB74] gi|197699163|gb|EDY46096.1| TrmH family RNA methyltransferase [Streptomyces sp. SPB74] Length = 315 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 67/281 (23%), Positives = 118/281 (41%), Gaps = 14/281 (4%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK---IFQ 70 + H K R + K+ Q ++ + + + G + V AL + Q Sbjct: 36 EARKGHV-KNRLANAKAKQTQRRTTAAKGRGRSSSELVVGRNPVFEALRDGVPATALYVQ 94 Query: 71 LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 + R + P +D++ HQGL L+ P + + Sbjct: 95 QFIDNDERVRDALKLAADRGGIHLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDL 153 Query: 130 RN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L++ LD V DP N+GAI+RS AF G++ +R + +A KS++G Sbjct: 154 PAAAYDEGGEPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAG 213 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241 P R++NLT AL+ G +GL++D + + + + + +++G+EGKGL Sbjct: 214 TAARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTVGELAALDGPVVIVIGSEGKGLS 273 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ET + MPG ++LN AA + +Y + A+ Sbjct: 274 RLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRAR 314 >gi|328958759|ref|YP_004376145.1| 23S rRNA methyltransferase [Carnobacterium sp. 17-4] gi|328675083|gb|AEB31129.1| 23S rRNA methyltransferase [Carnobacterium sp. 17-4] Length = 285 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 66/285 (23%), Positives = 125/285 (43%), Gaps = 13/285 (4%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67 + K F +++ K + ++ + + + + G L + R Sbjct: 3 RDNKNFGKRNNQPNKQSFTKKPARQTVKPVEDRVEEQETDRDLVAGRLPAIEVLKS-ERD 61 Query: 68 IFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 I ++ + + + + VP +D++V HQG+ + + Sbjct: 62 INKIFLQEGLSGSKMEEIQNLAKKRSVQISFVPKSKLDQLVDGM-NHQGVVVAASAFQYA 120 Query: 125 TLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 T+D ++LD V DPHN+G+I+R+A A GII KR + +A +A Sbjct: 121 TIDDLFAVAAQKNEDPFFILLDGVEDPHNLGSIMRTADAIGAHGIIIPKRRAVGLTATVA 180 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA+EH+P R++NL A++++ G G + + + E I L++G EG Sbjct: 181 KASTGAIEHVPVARVTNLVQAIKELKERGLWLYGTDMEGQDYRQWET-TLPIGLVMGNEG 239 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 KG+ +E M + M G +++LN S AA++ +Y K Sbjct: 240 KGISRLVKEQMDGMVTIPMTGHVQSLNASVAASLLMYEVYRGRNK 284 >gi|218682806|ref|ZP_03530407.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium etli CIAT 894] Length = 296 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 142/267 (53%), Positives = 185/267 (69%), Gaps = 14/267 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQS--FNQKSRHTSQPENLF-----------LYGVHTVSAA 60 S KD+HYA LRR HRD K+ + + + + + LYG+HTV AA Sbjct: 16 SAKDTHYATLRRAHRDAKRERGEIPTPPPQKRRRGGDDWKPPALAPDQVHLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP RK +L T+NALARL+ DA P + V PQ IDK++G EA+HQG+ LET P Sbjct: 76 LDNPERKKIKLFVTQNALARLEIDAETL-GIPFEIVSPQEIDKVLGPEAIHQGVMLETRP 134 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKSA Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALE IPYI+++NL DAL ++H GF TIGL S+ PLE +K+AL+LG+EGKGL Sbjct: 195 SGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGEKLALVLGSEGKGL 254 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267 R KT+ET ++A L MPG IK+LNVSN Sbjct: 255 RQKTRETVNALARLDMPGAIKSLNVSN 281 >gi|78187470|ref|YP_375513.1| RNA methyltransferase TrmH, group 3 [Chlorobium luteolum DSM 273] gi|78167372|gb|ABB24470.1| RNA methyltransferase TrmH, group 3 [Chlorobium luteolum DSM 273] Length = 248 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG + V L + ++ N +L + ++K+ Sbjct: 9 LVYGRNAVLELLREKPESVEKIYFQFNTSHPKLKEIIITARRQKI-VTGKARLEKLSLIA 67 Query: 109 AV--HQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+A + + T++ ++ LL+VL ++DPHNIGAI+R+A A + DG Sbjct: 68 GTTKHQGVAALISTVSYYTVEELLAAPRNSAPLLVVLQGLDDPHNIGAIIRTAEAVAADG 127 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ + +AV+ K+++GAL H+ ++ +L L+ +H G Q + +++ Sbjct: 128 VVLVEGKGAPVNAVVHKASAGALSHMRVAKVKSLVRCLELLHREGIQVLATDMEAETNYT 187 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A++LGAEG GL P+ E + + M G +++LNVS +A V LY Sbjct: 188 DADFRKATAIVLGAEGSGLAPEAMEFCDRVVRIPMAGCVESLNVSVSAGVMLYEAMRQR 246 >gi|300691589|ref|YP_003752584.1| tRNA/rRNA methyltransferase, SpoU like [Ralstonia solanacearum PSI07] gi|299078649|emb|CBJ51307.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia solanacearum PSI07] Length = 259 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 105/258 (40%), Gaps = 8/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLD 82 R++ +K +++ + ++ + L G+H V+A L+ L++ ++ A + Sbjct: 6 SRDNAVFKHLKALSGSTQQRRRAGQSVLDGIHLVAAYLDAGHTPAQCLVSERHLAHPEVV 65 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 P + + ++ V G+ L R ++LD + Sbjct: 66 PLLARLDPQHIVLLADSLFAQLT---TVVNGIDLMVLIDTPEGHLPHRIEHDCVILDGIQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILR A A + T + + SA ++A GA H+ + ++ Sbjct: 123 DAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNIVEHCTFESVHARL 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 H + SS +++ + + + +LG EG G+ + T+ + PG +++ Sbjct: 183 HVPL---LATSSHARQAVFDVPLHKPVGWVLGNEGAGVSEQWLS-VTTPISIPQPGGMES 238 Query: 263 LNVSNAAAVALYITQNHF 280 LNV+ AAA+ L+ Sbjct: 239 LNVAAAAAICLFEAVRQR 256 >gi|289551668|ref|YP_003472572.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus lugdunensis HKU09-01] gi|315659128|ref|ZP_07911993.1| RNA methyltransferase [Staphylococcus lugdunensis M23590] gi|289181199|gb|ADC88444.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus lugdunensis HKU09-01] gi|315495852|gb|EFU84182.1| RNA methyltransferase [Staphylococcus lugdunensis M23590] Length = 248 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 50 FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G H V A+ KI K + V+TVP +D + Sbjct: 5 IIVGRHAVKEAIVTGHTINKILIQEGIKKQQIKEILTNAKTQKLVVQTVPKSKLDHMSD- 63 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCD 160 A HQG+A AP + Q +++LD + DPHN+G+ILR+A A D Sbjct: 64 -APHQGVAALIAPYEYADFNHFIKMQQQKESLSTVIILDGLEDPHNLGSILRTADATGVD 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII KR S + + ++AK+++GA++HIP +R++NL+ + + + GF +G +D+ Sbjct: 123 GIIIPKRRSVALTQIVAKASTGAIQHIPVMRVTNLSQTIDDLKAHGFWIVGTEADNATDY 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A+++G+EG+G+ ++ + M G + +LN S AA + +Y Sbjct: 183 RDMAADMSLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNASVAAGLMMYEVYRKR 242 >gi|54022403|ref|YP_116645.1| putative tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152] gi|54013911|dbj|BAD55281.1| putative tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152] Length = 324 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 68/260 (26%), Positives = 113/260 (43%), Gaps = 12/260 (4%) Query: 34 QSFNQKSRHTSQP-ENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPH-- 89 + + + G + V L + RL L Sbjct: 66 RGAAGRPAGRKNDDGPELVLGRNPVVECLRAGVPATALYVAVGTENDERLTESVKLAADT 125 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVN 142 + VP +D++ +HQGLAL+ P D LL+ LD+++ Sbjct: 126 GISILEVPRTDLDRMSS-NGLHQGLALQVPPYRYAHPDDLAERARSSAEPALLVALDNIS 184 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+GA++RS AF G++ +R S S +AV ++++GA +P R +NLT L+ Sbjct: 185 DPRNLGAVIRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDW 244 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + G Q +GL + L++ D +++G+EGKGL +ET S+ + M G +++ Sbjct: 245 ANQGMQIVGLDAGGDTSLDEFDGTDPTVIVVGSEGKGLSRLVRETCDSVLSIPMAGPVES 304 Query: 263 LNVSNAAAVALYITQNHFAK 282 LN S AA V L + Sbjct: 305 LNASVAAGVVLSEIARQRRR 324 >gi|255282793|ref|ZP_05347348.1| RNA methyltransferase, TrmH family, group 3 [Bryantella formatexigens DSM 14469] gi|255266567|gb|EET59772.1| RNA methyltransferase, TrmH family, group 3 [Bryantella formatexigens DSM 14469] Length = 245 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K+F L ++ R H ++ V + +D++ Sbjct: 8 IEGRNAVIEAFRSGKTIDKLFVLDGCQDGPVRTIIREAKKHDTLLQFVTKERLDQMSETG 67 Query: 109 AVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A A + D ++ + L++LD + DPHN+GAI+R+A G+ Sbjct: 68 SHQGVIAYAAAYEYAEVDDILKIAEEKGEAPFLILLDGIEDPHNLGAIIRTANLAGAHGV 127 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I KR + +A +AK+++GAL + P +++NL ++++ G + + P+ Sbjct: 128 IIPKRRAAGLTATVAKTSAGALNYTPVAKVTNLAKTIEELKQKGIWFVCA-DMNGTPMYD 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G+EG+G+ +E A + M G I +LN S AA V Y Sbjct: 187 LDLKGPIGLVIGSEGEGVSRLVKEKCDFTASIPMKGDIDSLNASVAAGVMAYEIVRQR 244 >gi|121610346|ref|YP_998153.1| RNA methyltransferase [Verminephrobacter eiseniae EF01-2] gi|121554986|gb|ABM59135.1| RNA methyltransferase, TrmH family, group 3 [Verminephrobacter eiseniae EF01-2] Length = 248 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 106/243 (43%), Gaps = 11/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V L + ++ ++A R + + I K+ G Sbjct: 6 VLFGFHAVGVRLKTAPESVIEIYHEATRRDARMRQFLERARAAGARLIEADGMRIAKLAG 65 Query: 107 KEAVHQGLALETAPLLSPTLDA--------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A +LD LL+VLD V DPHN+GA LR A Sbjct: 66 SHGHQGVAARVQPVAPISSLDELLEKLQAAGSGPPLLLVLDGVTDPHNLGACLRVADGAG 125 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG D+ Sbjct: 126 AHAVIAPKDHAVGINATVAKVASGAAETMPYFMVTNLARTLDELKERSIWCIGTCDDAPG 185 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL+LGAEG G+R +T++T +A + M G +++LNVS A+ + LY Sbjct: 186 TLYQLDLKGPVALVLGAEGSGMRQRTRKTCDELARIPMQGAVESLNVSVASGICLYEALR 245 Query: 279 HFA 281 A Sbjct: 246 QRA 248 >gi|325285191|ref|YP_004260981.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489] gi|324320645|gb|ADY28110.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489] Length = 281 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 90/259 (34%), Gaps = 5/259 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + KK KSR + L G + AL + I L K+ ++ Sbjct: 25 QNPLIKKTLVLKDKSRERKKSNLFVLEGARELQLALK-GNYSIETLFFCKDLISEQAITD 83 Query: 86 NLPHP--FPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHVN 142 + + V V KI + +A +++ L L+++ + Sbjct: 84 LIKNNSTTNVIEVNLDVYQKIAYRATTEGVVALVKSKNHTINNLQLSSKKPLILIAEAPE 143 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 P NIGA+LR+A A + D +I +S I ++ + + Sbjct: 144 KPGNIGALLRTADAANLDAVII-ANPKTDLYNPNIIRSSVGCVFTTKIATGTTSEIIAYL 202 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 T + + K A+++G E GL + + + M G I + Sbjct: 203 KEHNIATYCAALTASKIYTTVDYTSGSAIVVGTEATGLSKEWLSNSNQNIIIPMEGQIDS 262 Query: 263 LNVSNAAAVALYITQNHFA 281 +NVS AAAV ++ + + Sbjct: 263 MNVSVAAAVVIFEAKRQRS 281 >gi|257888687|ref|ZP_05668340.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733] gi|257824741|gb|EEV51673.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733] Length = 286 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 75/283 (26%), Positives = 130/283 (45%), Gaps = 17/283 (6%) Query: 13 FSLKDSHYAKL----RRNHR-DYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65 + H +K ++ +R KK NQ ++ F++G H AL Sbjct: 3 KERTNKHQSKRGFEDKKQNRYPNKKRTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGR 62 Query: 66 -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 K+F ++ + PVK VP Q ++ + VHQG+ L P Sbjct: 63 GNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETLSDH-GVHQGVVLAITPYEYL 121 Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 +LD + + ++LD + DPHN G+ILR+A A DG+I K + + ++ Sbjct: 122 SLDQLIERTKEKKEAPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVT 181 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA+E++P R++NL A+Q++ GF G + K IAL++G EG Sbjct: 182 KTSTGAVEYVPVARVTNLVQAVQQLKETGFWVFGTDMIGTNFQKWNAK-GSIALVIGNEG 240 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 KG+ P ++ + + M G +++LN S AA + +Y + Sbjct: 241 KGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283 >gi|169824090|ref|YP_001691701.1| putative tRNA/rRNA methyltransferase [Finegoldia magna ATCC 29328] gi|302381082|ref|ZP_07269542.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna ACS-171-V-Col3] gi|303235343|ref|ZP_07321961.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna BVS033A4] gi|167830895|dbj|BAG07811.1| putative tRNA/rRNA methyltransferase [Finegoldia magna ATCC 29328] gi|302311129|gb|EFK93150.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna ACS-171-V-Col3] gi|302493657|gb|EFL53445.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna BVS033A4] Length = 244 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 102/240 (42%), Gaps = 10/240 (4%) Query: 50 FLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +L G + V AL ++ + V+ V + I+K Sbjct: 3 YLVGRNPVMEALEMDMGVTNLYIQKGELKGFIKKIEKKAYDMGIKVEYVDKKYIEKFAEN 62 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A HQG+ + +D + L++LD + DPHN+G+I+R+A C Sbjct: 63 TA-HQGVMAKMPSFGYSNVDEMIIYAKKRNEDPFLIILDEITDPHNLGSIIRTAEVAGCH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + +A K+++GA+ +I R++N+T + + G ++ + Sbjct: 122 GVIIPKHRACEVNATAIKTSAGAVFNIKIARVTNITTTINYLKEHNIWIYGACGEASQTH 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q I L++G EGKG+ +E + + M G ++LN SNAA++ +Y Sbjct: 182 TQANLKGPIGLVIGNEGKGISRLVRENCDQLIKIPMYGKTESLNASNAASILIYEIIRQR 241 >gi|291563601|emb|CBL42417.1| rRNA methylase, putative, group 3 [butyrate-producing bacterium SS3/4] Length = 248 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 55/238 (23%), Positives = 102/238 (42%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + ++F L ++ R H V VP + +D + Sbjct: 8 IEGRNAVLEAFRSGKTIDRLFVLDGCQDGPVRTIVREAKKHDTIVNFVPKERLDSMSETG 67 Query: 109 AVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A A + D ++ L +LD + DPHN+GAI+R+A G+ Sbjct: 68 HHQGVMAYAAAYEYAEVEDILKIAEEKGEPPFLFLLDGIEDPHNLGAIIRTANLAGAHGV 127 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I KR + +A +A++++GAL + P +++N+ ++ + G + + + + Sbjct: 128 IIPKRRAVGLTATVARTSAGALNYTPVAKVTNMAATIEDLKKRGIWFVCA-DMGGESMYR 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G EG+G+ +E +A + M G I +LN S A V Y Sbjct: 187 LNLTGPIGLVIGNEGEGVSRLVKEKCDMIASIPMKGDIDSLNASVATGVLAYEIVRQR 244 >gi|254973712|ref|ZP_05270184.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-66c26] gi|255091102|ref|ZP_05320580.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CIP 107932] gi|255099214|ref|ZP_05328191.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-63q42] gi|255304997|ref|ZP_05349169.1| putative tRNA/rRNA methyltransferase [Clostridium difficile ATCC 43255] gi|255312757|ref|ZP_05354340.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-76w55] gi|255515517|ref|ZP_05383193.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-97b34] gi|255648610|ref|ZP_05395512.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-37x79] gi|306518733|ref|ZP_07405080.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-32g58] Length = 245 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 105/239 (43%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A+ + L+A K + ++ V +D++ Sbjct: 4 IEGRNPVIEAIKSDREIDKILIANSAKEGSIKKIIGMAKDKNIIIQYVDKHKLDEVSTSH 63 Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + LD ++LD + DPHN+G+I+R+A A G Sbjct: 64 S-HQGVIAYASEYKYYELDELIDLAKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHG 122 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR S + V+AK+++GA+E++P +++N+ + ++++ G + Sbjct: 123 VIIPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAA-DMDGETFY 181 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + +++G+EG G+ ++ + + M G + +LN S A + LY Sbjct: 182 KQNLTGPLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQR 240 >gi|332686708|ref|YP_004456482.1| rRNA methylase [Melissococcus plutonius ATCC 35311] gi|332370717|dbj|BAK21673.1| rRNA methylase [Melissococcus plutonius ATCC 35311] Length = 261 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 96/260 (36%), Gaps = 4/260 (1%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 L + K+ + QK ++ + + G H V A+ N ++ I +L T + Sbjct: 5 LSTKNILIKEWRKLQQK-KYRQDQKKYIVEGFHLVEEAI-NTNQSIESILLTSKGKMEWE 62 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + V + + + QG+ A + + ++LD++ Sbjct: 63 EWLLDKDFSQIIIVSEEVMHYLSKLP-TPQGILAIIAMQEEREIKDIMVDGGWLLLDNIQ 121 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ++R+A A G+I + + S +S G+ H+ + S Q Sbjct: 122 DPGNVGTMIRTADAAGLAGVILGEGTADIYSTKTLRSMQGSNYHLSILHASLPAVLSQFQ 181 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + Q L++G EG+G+ + H+ M G ++ Sbjct: 182 EKEIPVFGTEVTQRSVAYTQVKVPHTYGLMVGNEGQGINQSLLTQVDQVIHIPMKGASES 241 Query: 263 LNVSNAAAVALYITQNHFAK 282 LNV+ AA + ++ + K Sbjct: 242 LNVAVAAGILIFHFE-QIKK 260 >gi|238918378|ref|YP_002931892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Edwardsiella ictaluri 93-146] gi|238867946|gb|ACR67657.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 247 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 104/243 (42%), Gaps = 9/243 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKI 104 + +YG+H V A L ++ + K R V+ Q +D+ Sbjct: 2 SEIIYGIHAVKALLEQDPQRFLDVFVMKGREDRRLLPLLQQLEECGIRVQVAQRQWLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V +A D + L++LD V DPHN+GA LRSA A Sbjct: 62 VEGAVHQGIVARVKPGRQYQENDLPDLLAGLEHPPFLLILDGVTDPHNLGACLRSADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D +I + S +A K A GA E++P IR++NL ++ + +G + ++ Sbjct: 122 VDAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTIRLLQQENIWIVGTAGEADH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL++GAEG G+R T+E + + M G + +LNVS A + L+ Sbjct: 182 SLYQSRMTGAMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEVVR 241 Query: 279 HFA 281 + Sbjct: 242 QRS 244 >gi|107028816|ref|YP_625911.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia AU 1054] gi|116690025|ref|YP_835648.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia HI2424] gi|105897980|gb|ABF80938.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia AU 1054] gi|116648114|gb|ABK08755.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia HI2424] Length = 260 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 103/257 (40%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ YK++++ + H + L G H SA L+ + + T+ AL + Sbjct: 6 SRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGATPELCV-TTEGALGHAEA 64 Query: 84 DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A + + V P + + G L P + V ++ +++ D V Sbjct: 65 QAIVARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPAHPLPERVTHTSVVL--DGVQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA A + + + S+ + +S GA + +++ Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEAEALAERL 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 T + + + + +A + G EG G+ ++ AT + PG +++ Sbjct: 183 DVPVALTDSHGAQAVYDCD---LSGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ AAAV L+ Sbjct: 240 LNVAAAAAVCLFEQVRQ 256 >gi|325291775|ref|YP_004277639.1| rRNA methylase [Agrobacterium sp. H13-3] gi|325059628|gb|ADY63319.1| rRNA methylase [Agrobacterium sp. H13-3] Length = 286 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 90/257 (35%), Gaps = 4/257 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K +++ QK + + G+ V AL + A L A Sbjct: 24 NPIIKDIKALTQK-KGREETGTFMAEGLKLVIDALELGWTISTLVYAKAAKGKPLVEQAA 82 Query: 87 L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + V V + I I ++ + + + + LD V D Sbjct: 83 VKTVASGGLVLEVSEKVIASITRRDNPQMVVGIFDQRWKPLKDIRPEKGETYIALDRVRD 142 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+R+A A G+I + S ++ G++ P R S K Sbjct: 143 PGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATMGSVFATPVARASVEEFLSWKKS 202 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + S + + + L++G E GL P+ A +A + G +L Sbjct: 203 ANVSVVATHLAGSVDYRKIDYAGKPVVLLMGNEQSGLPPELAGRADQLARIPQQGRADSL 262 Query: 264 NVSNAAAVALYITQNHF 280 N++ A AV L+ + H Sbjct: 263 NLAIATAVMLFEARRHL 279 >gi|260772094|ref|ZP_05881011.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio metschnikovii CIP 69.14] gi|260612961|gb|EEX38163.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio metschnikovii CIP 69.14] Length = 246 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 114/243 (46%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 N +YG+H+V+A + +I ++ K RL N ++ + + +D Sbjct: 3 NELIYGIHSVNAVMQREPARIIEVYVLKGRQDDRLLPVLNELQRLGLSIQEMGRKALDDK 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL + P + LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-QGANHQGLIAKVKPAKALNEHDLDAILSQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDRSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L +A+++GAEG G+R T++T + + M G + +LNVS A + L+ Sbjct: 182 DLYHSKLTGPLAIVMGAEGDGMRRLTRDTCDDLIKIPMAGSVSSLNVSVATGICLFEAVR 241 Query: 279 HFA 281 Sbjct: 242 QRN 244 >gi|227552719|ref|ZP_03982768.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecium TX1330] gi|257897355|ref|ZP_05677008.1| RNA methyltransferase TrmH [Enterococcus faecium Com12] gi|293378883|ref|ZP_06625038.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium PC4.1] gi|227178119|gb|EEI59091.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecium TX1330] gi|257833920|gb|EEV60341.1| RNA methyltransferase TrmH [Enterococcus faecium Com12] gi|292642424|gb|EFF60579.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium PC4.1] Length = 286 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 75/283 (26%), Positives = 129/283 (45%), Gaps = 17/283 (6%) Query: 13 FSLKDSHYAKL----RRNHR-DYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65 + H +K ++ +R KK NQ ++ F++G H AL Sbjct: 3 KERTNKHQSKRGFEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGR 62 Query: 66 -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 K+F ++ + PVK VP Q ++ + VHQG+ L P Sbjct: 63 GNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETLSDH-GVHQGVVLAITPYEYL 121 Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 +LD + ++LD + DPHN G+ILR+A A DG+I K + + ++ Sbjct: 122 SLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVT 181 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA+E++P R++NL A+Q++ GF G + K IAL++G EG Sbjct: 182 KTSTGAVEYVPVARVTNLVQAVQQLKETGFWVFGTDMTGTNFQKWNAK-GSIALVIGNEG 240 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 KG+ P ++ + + M G +++LN S AA + +Y + Sbjct: 241 KGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283 >gi|325287036|ref|YP_004262826.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga lytica DSM 7489] gi|324322490|gb|ADY29955.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga lytica DSM 7489] Length = 245 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 112/239 (46%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG+ + A+N KIF K L R + + VP + ++++ + Sbjct: 7 IYGIRAIIEAINANEALDKIFVQKGLKGDLFRELENLARKKGISISYVPVEKLNRLT--K 64 Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ +P+ + + + L ++LD ++D N GAI+R+A DG Sbjct: 65 NNHQGVVANISPITFHNFEELVESVIQKKEAPLFLLLDQLSDVRNFGAIIRTAECTGVDG 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II K+ + +A K+++GA +P +++++ DA+ + + G + I S ++ + Sbjct: 125 IIIQKKGAAPVTADTIKTSAGAAFKVPIAKVNHIKDAVHYLQASGVKIIAASEKTENTIY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A+I+G+E G+ P + A A L + G I++LNVS A V LY Sbjct: 185 DVSFKEASAIIMGSEDVGISPSILKAADHTAKLPLLGEIESLNVSVACGVFLYEAVRQR 243 >gi|293553641|ref|ZP_06674265.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1039] gi|291602216|gb|EFF32444.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1039] Length = 286 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 129/283 (45%), Gaps = 17/283 (6%) Query: 13 FSLKDSHYAKL----RRNHR-DYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65 + H +K ++ +R KK NQ ++ F++G H AL Sbjct: 3 KERTNKHQSKRGFEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGR 62 Query: 66 -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 K+F ++ + PVK VP Q ++ + VHQG+ L P Sbjct: 63 GNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETLSDH-GVHQGVVLAITPYEYL 121 Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 +LD + ++LD + DPHN G+ILR+A A DG+I K + + ++ Sbjct: 122 SLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVT 181 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA+EH+P R++NL A+Q++ GF G + K IAL++G EG Sbjct: 182 KTSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTGTNFQKWNAK-GSIALVIGNEG 240 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 KG+ P ++ + + M G +++LN S AA + +Y + Sbjct: 241 KGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283 >gi|297568265|ref|YP_003689609.1| RNA methyltransferase, TrmH family, group 3 [Desulfurivibrio alkaliphilus AHT2] gi|296924180|gb|ADH84990.1| RNA methyltransferase, TrmH family, group 3 [Desulfurivibrio alkaliphilus AHT2] Length = 264 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 69/260 (26%), Positives = 116/260 (44%), Gaps = 11/260 (4%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANL 87 K + + + +G H V A L++ + QL + R + Sbjct: 7 KHAPGRKRDAGDRNLHAATTAWGFHAVYALLSHRPATVAQLFISPRRDDQRIRELLELAA 66 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHV 141 H PV T P ++ + +E HQG+ PTL+ + +QLL+ LD + Sbjct: 67 RHGIPVHTEIPADLN--LEEEISHQGVVARVKATGQPTLEGLLASLQPKENQLLLALDSI 124 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+GAI+R+A AF DG++ K S + + K+A+G L + R++NL+ +L + Sbjct: 125 QDPRNLGAIIRTAAAFGADGLLIPKDRSAPLTGTVMKAAAGTLPLLTICRVTNLSQSLAQ 184 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + GF G + + L Q + I L++G E KGLRP + + M ++ Sbjct: 185 LKKHGFWIYGAGGQAPQQLHQTSFSGPICLVMGNEQKGLRPLVSRHCDHLVAIPMAAGVE 244 Query: 262 ALNVSNAAAVALYITQNHFA 281 +LNV+ A V L + Sbjct: 245 SLNVAVATGVILSEIRRQQN 264 >gi|326334333|ref|ZP_08200547.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693492|gb|EGD35417.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 261 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 102/257 (39%), Gaps = 4/257 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K + S QKS+ + + G ++ A+ I QL L++ + + Sbjct: 8 QNPLIKHLYSLTQKSKLRREQREFLIEGRRELTLAIEAGY-LIKQLFFCSAILSQEEVEK 66 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + + + K+ + + LA +T L + + L+++ + P Sbjct: 67 QFA-GEKLTEISMEIYQKLSYRSSTEGILALAQTKDHFLSELTFHKENPLILIAEAPEKP 125 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIGA+LR+A A D + + + + +S+ G L +P S + L + Sbjct: 126 GNIGALLRTADAAGVDAVCIANPKTDLYNPNVIRSSVGTLFTVPIATASTK-EILSFLQK 184 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 F + + P + + A+++G E GL P+ ++ + M G I ++N Sbjct: 185 ENFTIYCAALSASVPYDSVSYRGRTAIVVGTEDVGLSPQWLSASSKNIIIPMRGKIDSMN 244 Query: 265 VSNAAAVALYITQNHFA 281 VS +AAV ++ Sbjct: 245 VSTSAAVLIFEAVRQRK 261 >gi|229163553|ref|ZP_04291503.1| RNA methyltransferase, TrmH [Bacillus cereus R309803] gi|228619935|gb|EEK76811.1| RNA methyltransferase, TrmH [Bacillus cereus R309803] Length = 265 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYMVPEAIVKVLRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPTGSFALIVGNEGNGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILTKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|327438252|dbj|BAK14617.1| rRNA methylase [Solibacillus silvestris StLB046] Length = 287 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 78/284 (27%), Positives = 128/284 (45%), Gaps = 17/284 (5%) Query: 10 EKIFSLKDSHYAKLRRNHRD-YKKMQSFNQKSRHTSQPEN--LFLYGVHTVSAALNNPSR 66 EK + K R D +K + Q+ ++Q E + G + V AL R Sbjct: 3 EKRQPNRKPRDFKGRDKKADTFKTHEKKQQEKPQSAQEELSGEMIAGKNPVLEALRAG-R 61 Query: 67 KIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 +I +L + + D V+ VP Q +DK+ HQG+ A Sbjct: 62 EINKLWIAEGVKKTGVQELMDLAKEQGVLVQFVPKQKVDKLAE---NHQGIVASVAAYDY 118 Query: 124 PTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 LD ++LD + DPHN+G+I+R+A A GII KR + +AV+ Sbjct: 119 AELDDLFAAAKAKSEDPFFLILDELEDPHNLGSIMRTADAIGAHGIIIPKRRAVGLTAVV 178 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 AK+++GA+EH+P +R++NL + ++ G G + + +ALI+G+E Sbjct: 179 AKASTGAIEHVPVVRVTNLAQTVDELKDRGVWIAGTDAKGSADYRKMDATLPLALIIGSE 238 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 GKG+ ++ + HL M G + +LN S AAA+ +Y Sbjct: 239 GKGMSRLLKDKCDFLYHLPMVGHVTSLNASVAAALLMYEVYRKR 282 >gi|281492485|ref|YP_003354465.1| 23S rRNA Gm2251 methyltransferase [Lactococcus lactis subsp. lactis KF147] gi|281376149|gb|ADA65640.1| 23S rRNA Gm2251 methyltransferase [Lactococcus lactis subsp. lactis KF147] Length = 242 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 114/244 (46%), Gaps = 13/244 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102 +YG+H V+ AL + +L ++ + + + P ++ Sbjct: 2 ENTDLIYGLHAVTEAL--NGDLVNKLYVQEDLRGKNVEKIKELARLKKVNISWTPKTELN 59 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 K+ + VHQG + L+ + ++ +++LD + DPHN+G+I R+A A Sbjct: 60 KLT-ENGVHQGFMARVSEFAYADLEKILPALAEKSDATILILDELTDPHNLGSIARTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II K + + K+++GAL+H+P +R++NL+ L K+ + F G D Sbjct: 119 TGVDAIIIPKHRAVGITPTAVKASTGALQHVPIVRVTNLSQTLDKLKAANFWVFGTDMDG 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + K K+ALI+G EG G+ ++ M + M G +++LN S AA++ +Y Sbjct: 179 TVYSKWNTK-GKVALIIGNEGHGIGQNLKKQVDEMITIPMTGHVQSLNASVAASILMYEI 237 Query: 277 QNHF 280 + Sbjct: 238 FRNR 241 >gi|237798286|ref|ZP_04586747.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021138|gb|EGI01195.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 253 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 113/239 (47%), Gaps = 8/239 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH + A L + +++ + + R+ +L V + + E Sbjct: 7 IYGVHALEALLRHHPKRVKHIWLAEGRNDPRVQTLVSLASENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P LD LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Q Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ + Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 245 >gi|167762351|ref|ZP_02434478.1| hypothetical protein BACSTE_00705 [Bacteroides stercoris ATCC 43183] gi|167699994|gb|EDS16573.1| hypothetical protein BACSTE_00705 [Bacteroides stercoris ATCC 43183] Length = 246 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 105/245 (42%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAVQAGKD-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I HQG+ + + L + L ++LD + D N GAI R+ Sbjct: 63 IT--RKNHQGVIAFVSAVTYQKTEDLVPFLFEEGKNPLFVMLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D +I + S + +A K+++GAL +P R NL D LQ + S GF + + Sbjct: 121 AAVDAVIIPAKNSVTVNADAVKTSAGALHTLPVCREQNLKDTLQFLKSSGFHIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE KG+ + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRT 245 >gi|49478690|ref|YP_038610.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330246|gb|AAT60892.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 254 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 1 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 42 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEVIVKVLRETETTQGVFAVCEKH 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + + ++ + +S Sbjct: 97 ESEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 153 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 212 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248 >gi|291519018|emb|CBK74239.1| rRNA methylase, putative, group 3 [Butyrivibrio fibrisolvens 16/4] Length = 249 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 105/247 (42%), Gaps = 14/247 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTI 101 E+ + G + V A + I +L + + +A + V + + Sbjct: 2 EESRIVEGRNAVLEAFRSGKT-IDRLFVLEGCKDGPVQTILREAKKSKDTVISFVKKERL 60 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154 D++ + HQG+ A LD + L++LD++ DPHN+GAI+R+A Sbjct: 61 DQLS-ETGKHQGVIAYAASYDYAELDDILAAAREKGEDPFLIILDNIEDPHNLGAIIRTA 119 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 G++ K + +A +AK+++GA+ + P +++N++ ++++ G + Sbjct: 120 NQAGAHGVVIPKHRAVGLTATVAKASAGAINYTPVAKVTNISKTMEELKEQGMWFVCA-D 178 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + I L++G EG G+ ++ +A + M G I +LN S A V Y Sbjct: 179 MGGTTMYDLNLTGSIGLVIGNEGHGVSDLVKKNCDMIASIPMYGDIDSLNASVACGVLAY 238 Query: 275 ITQNHFA 281 Sbjct: 239 EVVRQRI 245 >gi|298571690|gb|ADI87842.1| hypothetical protein AKSOIL_0334 [uncultured bacterium Ak20-3] Length = 272 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 96/257 (37%), Gaps = 3/257 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDW 83 + KK+ + ++ + + + G A+ + + + Sbjct: 11 QNPQIKKVSNLRER-KWRKKYGEFLVEGTREQEKAIAFGFQVLELYFCPSFLSDKGEEIL 69 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 ++ + + +KIV ++++ + + L + V+ + L++++ V Sbjct: 70 NSIKDPKVSIYELTEPCFNKIVVRQSLDGIVLVMKPKLKALEDFPVKQNPFLLLIESVEK 129 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GA+LR+A DG++ + + + +S+ G +P S Sbjct: 130 PGNLGALLRTADGSGVDGVLVLESQIDLYNPNVIRSSLGCCFSLPIAMCSREEAYAFCKE 189 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + S++ + A++LG+E KGL P A + + M G +L Sbjct: 190 RKIAIHAAVLSNASVYYDTVNYPSSTAILLGSEDKGLDPYWVSHANHLISIPMHGEADSL 249 Query: 264 NVSNAAAVALYITQNHF 280 NVS A AV LY Sbjct: 250 NVSAAGAVLLYEVSRRR 266 >gi|222084674|ref|YP_002543203.1| rRNA methylase protein [Agrobacterium radiobacter K84] gi|221722122|gb|ACM25278.1| rRNA methylase protein [Agrobacterium radiobacter K84] Length = 286 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 90/257 (35%), Gaps = 4/257 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K +++ K + + G+ V AL + A L Sbjct: 24 NPIIKDIKALTNK-KSREESGAFLAEGLKLVIDALELGWTIRTLVYAKAAKGKPLVEQVA 82 Query: 87 L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V V + I I ++ + + + + + LD V D Sbjct: 83 AKTVAAGGLVLEVSEKVIASITRRDNPQMVVGIFDQRWRPLRDVRPKAGETWVALDRVRD 142 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+R+A A G+I + S ++ G++ +P ++ + K Sbjct: 143 PGNLGTIIRTADAAGASGVILVGETTDPFSLETVRATMGSVFAVPVVKATPEEFLAWKKT 202 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + + K + L++G E GL + A ++A + G +L Sbjct: 203 AGVSVVATHLAGAVDYRTIDYKKKPVVLLMGNEQSGLPDALAKEADALARIPQAGRADSL 262 Query: 264 NVSNAAAVALYITQNHF 280 N++ A AV L+ + H Sbjct: 263 NLAVATAVMLFEARRHL 279 >gi|167855195|ref|ZP_02477965.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis 29755] gi|167853648|gb|EDS24892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis 29755] Length = 244 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 8/237 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V + L+ ++ ++ K RL N V+ V Q +D Sbjct: 5 IYGIHAVKSFLDVAPERLIEVFVLKGREDKRLTPLLNELQRLGIRVQQVNRQALDNKAQG 64 Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E +A D + + L++LD V DPHN+GA LR+A A D + Sbjct: 65 EVHQGIIAKIIQAKELNESDLDQILDRKANPFLLILDGVTDPHNLGACLRTADAAGVDAV 124 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S ++ K A GA E +P IR++NL ++++ +G + ++ + L Q Sbjct: 125 IVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQERNIWIVGTAGEATESLYQ 184 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 IAL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 185 VKLTGSIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVRQ 241 >gi|81428990|ref|YP_395990.1| putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] gi|78610632|emb|CAI55683.1| Putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] Length = 253 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 56/274 (20%), Positives = 102/274 (37%), Gaps = 26/274 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ KI + K K +R + L G H V A Sbjct: 1 MEYIQSNQNTKIKAAKKLTVKKNQR-------------------KENTYLLEGWHLVQEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + N + I Q+ AT+ + F + + + + + QG+ Sbjct: 42 IQNKA-VIRQVFATEKYVDERALRGLYDDTFEI----APEVAQHLSETKAPQGIFAVVEM 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 +P + + LL+ D V DP NIG ++R+A A G++ + L +S Sbjct: 97 SETPMPEKLTGRYLLL--DAVQDPGNIGTMIRTADAAGFAGVVLGNGSVDLYNPKLLRSM 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P + + + + + + K +ALILG EG G+ Sbjct: 155 QGSHFHLPIYQGNLIDWMKKFNSQDVPVYGTELNPEAISYQDVPKTADMALILGNEGNGV 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 T ++ +PG ++LNV+ AA + ++ Sbjct: 215 AKDVLAATTQNLYIPIPGNAESLNVAVAAGILMF 248 >gi|149192027|ref|ZP_01870254.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio shilonii AK1] gi|148834128|gb|EDL51138.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio shilonii AK1] Length = 245 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 115/243 (47%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLERDPVRFIEAYVLKGRQDERLMPVLNELTQIGVSIQQMNRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQG+ + P + LL++LD V DPHN+GA LR+A A Sbjct: 63 A-RGANHQGIIAKVKPAKQLNENDLDSILSQHAQPLLLILDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G G + ++ Sbjct: 122 VAAVIVPKDRSAPLTATVSKVACGAAETVPLVRVTNLARTMRSLQEQGIWIAGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q + +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLDGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HFA 281 A Sbjct: 242 QRA 244 >gi|302332245|gb|ADL22438.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus JKD6159] Length = 248 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 114/243 (46%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E+ + G H V A+ +P KI K V+TVP +D + Sbjct: 2 EDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 62 A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S + + +AK+++GA+EH+P IR++NL + + GF G +++ Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDDLKDNGFWVAGTEANNA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239 Query: 278 NHF 280 Sbjct: 240 RKR 242 >gi|298693863|gb|ADI97085.1| rRNA methylase [Staphylococcus aureus subsp. aureus ED133] Length = 248 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 114/243 (46%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E+ + G H V A+ +P KI K V+TVP +D + Sbjct: 2 EDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 62 A--NAPHQGVAALIAPYEYADFDQFLKQQKEKGGLSTVLILDGLEDPHNLGSILRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S + + +AK+++GA+EH+P IR++NL + + GF G +++ Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDDLKDNGFWVAGTEANNA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239 Query: 278 NHF 280 Sbjct: 240 RKR 242 >gi|260581687|ref|ZP_05849484.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Haemophilus influenzae NT127] gi|260095280|gb|EEW79171.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Haemophilus influenzae NT127] Length = 246 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGTVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL+ + +G + ++ + + Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIARQR 243 >gi|219872021|ref|YP_002476396.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis SH0165] gi|219692225|gb|ACL33448.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis SH0165] Length = 244 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 109/237 (45%), Gaps = 8/237 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V + L+ ++ ++ K RL N V+ V Q +D V Sbjct: 5 IYGIHAVKSFLDVAPERLIEVFVLKGREDKRLTPLLNELQRLGIRVQQVNRQALDNKVQG 64 Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E +A D + + L++LD V DPHN+GA LR+A A D + Sbjct: 65 EVHQGIIAKIIPAKELNESDLDQILDRKANPFLLILDGVTDPHNLGACLRTADAAGVDAV 124 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S ++ K A GA E +P IR++NL ++++ +G + ++ + L Q Sbjct: 125 IVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQERNIWIVGTAGEATESLYQ 184 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 IAL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 185 VKLTGSIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVRQ 241 >gi|229542223|ref|ZP_04431283.1| RNA methyltransferase, TrmH family, group 3 [Bacillus coagulans 36D1] gi|229326643|gb|EEN92318.1| RNA methyltransferase, TrmH family, group 3 [Bacillus coagulans 36D1] Length = 247 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 112/244 (45%), Gaps = 13/244 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDK 103 + ++ G + V AL R+I ++ + + + + V+ VP + ID+ Sbjct: 2 DQEYIAGKNPVLEALRAG-REINKIWIAEGSQKGAMKQVIELARERKVTVQFVPKKKIDQ 60 Query: 104 IVGKEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ A +++LD + DPHN+G+ILR+A A Sbjct: 61 VAD--GAHQGVLALVAAYRYAETGDMFKLAKERNEHPFILILDELEDPHNLGSILRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I KR S + +A +AK+++GA+EHIP R++NL+ + + G G + Sbjct: 119 VGAHGVIIPKRRSVALTATVAKASTGAIEHIPVARVTNLSQTIAGLKQQGLWIAGTDASG 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 Q + + L++G+EGKG+ +E + L M G + +LN S AA + +Y Sbjct: 179 TTDYRQMDADLPLCLVIGSEGKGMSRIVKEACDFLIRLPMAGHVTSLNASVAAGLLMYEV 238 Query: 277 QNHF 280 Sbjct: 239 YRKR 242 >gi|126697621|ref|YP_001086518.1| putative tRNA/rRNA methyltransferase [Clostridium difficile 630] gi|260681827|ref|YP_003213112.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CD196] gi|260685425|ref|YP_003216558.1| putative tRNA/rRNA methyltransferase [Clostridium difficile R20291] gi|115249058|emb|CAJ66869.1| putative tRNA/rRNA methyltransferase, TrmH family, group3 [Clostridium difficile] gi|260207990|emb|CBA60152.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CD196] gi|260211441|emb|CBE01546.1| putative tRNA/rRNA methyltransferase [Clostridium difficile R20291] Length = 248 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 105/239 (43%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A+ + L+A K + ++ V +D++ Sbjct: 7 IEGRNPVIEAIKSDREIDKILIANSAKEGSIKKIIGMAKDKNIIIQYVDKHKLDEVSTSH 66 Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + LD ++LD + DPHN+G+I+R+A A G Sbjct: 67 S-HQGVIAYASEYKYYELDELIDLAKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHG 125 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR S + V+AK+++GA+E++P +++N+ + ++++ G + Sbjct: 126 VIIPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAA-DMDGETFY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + +++G+EG G+ ++ + + M G + +LN S A + LY Sbjct: 185 KQNLTGPLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQR 243 >gi|42783734|ref|NP_980981.1| RNA methyltransferase [Bacillus cereus ATCC 10987] gi|42739664|gb|AAS43589.1| RNA methyltransferase, TrmH family [Bacillus cereus ATCC 10987] Length = 254 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 1 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 42 LKVG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPESIVKVLRETETTQGVFAVCEKH 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 97 EKEVALADGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 153 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 212 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248 >gi|270158538|ref|ZP_06187195.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968] gi|289166630|ref|YP_003456768.1| enzyme [Legionella longbeachae NSW150] gi|269990563|gb|EEZ96817.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968] gi|288859803|emb|CBJ13784.1| putative enzyme [Legionella longbeachae NSW150] Length = 250 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 9/241 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++YG+H VSA L NP R +L ++ + D + ++ V +++ Sbjct: 5 YVYGLHAVSALLANPHRMTKKLYVSLDREDNRLQEIIDKAMQANINIEKVSMHKMNQRFA 64 Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 +A ++ L++ ++ L+++LD + DPHN+GA LR+A A D Sbjct: 65 DFTHQGVVACASSLPEYNESHLLALLESSKHPALILILDGITDPHNLGACLRTADATGVD 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S S + V++K A GA E +P +R++NL +++ + G G + ++ L Sbjct: 125 FVMIPKDKSASITPVVSKVACGAAESVPLVRVTNLVRSIKLLKEHGVWVYGAAGEATGTL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q IA++LGAEG+GLR T+E S+ L M G + +LNVS A V+LY Sbjct: 185 YQTDCTSAIAIVLGAEGEGLRRLTRENCDSLFSLPMLGSVDSLNVSVATGVSLYEILRQR 244 Query: 281 A 281 Sbjct: 245 K 245 >gi|56476097|ref|YP_157686.1| tRNA/rRNA methyltransferase protein [Aromatoleum aromaticum EbN1] gi|56312140|emb|CAI06785.1| tRNA/RRNA methyltransferase protein [Aromatoleum aromaticum EbN1] Length = 244 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 116/239 (48%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H V L +F+L +A A+ + + +D +VG Sbjct: 5 LIYGFHAVLGKLRRDPESVFELYLSAQRTDARAKDVVRLAESQNVRLIQAEAERLDGMVG 64 Query: 107 KEAVHQGLALETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ L+ + + L++VLD V DPHN+GA LR A A Sbjct: 65 TRR-HQGVVARVDAKSRELKLADVLEVLEENALILVLDGVQDPHNLGACLRVADAVGAHA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ K + +A K ASGA + +PY+ ++NL AL++M G +G + +++K + Sbjct: 124 VVAPKDRAVGLNATAIKVASGAADSVPYVTVTNLARALREMQEAGIWVVGAAGEAEKSVY 183 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +A +LGAEG GLR T+ET +A + M G +++LNVS A+ + L+ + Sbjct: 184 EVDQKGPVAWVLGAEGDGLRRLTRETCDELARIPMLGTVESLNVSVASGICLFEARRQR 242 >gi|153827413|ref|ZP_01980080.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2] gi|149738686|gb|EDM53028.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2] Length = 246 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 111/242 (45%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTVPPQTIDKI 104 N +YG+H V+A L + + K RL N ++ + + +D Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL P + A LL+VLD V DPHN+ A LR+A A Sbjct: 63 A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLXACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A + L+ Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDGLIKIPMAGSVSSLNVSVACGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|114706460|ref|ZP_01439362.1| rRNA methylase protein, TrmH family [Fulvimarina pelagi HTCC2506] gi|114538321|gb|EAU41443.1| rRNA methylase protein, TrmH family [Fulvimarina pelagi HTCC2506] Length = 284 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 94/255 (36%), Gaps = 4/255 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDW 83 + K +++ QK +H + G+ V AL+ ++A +AL Sbjct: 26 NPIVKDIRALVQK-KHRDETGLFLAEGLKLVIDALDAGWEIETLVVARAAQDSALLHKTA 84 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + + ++ I ++ + + + A + +++L+ LD V D Sbjct: 85 SRTVALGADLIEANHKVLEAITRRDNPQNAVGVFRKKTVPLERLAPKPNEVLVALDRVRD 144 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LR+A A G++ S ++ G++ +P R+ + Sbjct: 145 PGNLGTVLRTADAVGAKGVVLVGETVDPFSLEAVRATMGSIFAVPVSRVGEAAFIEWRAG 204 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 S + + + + L++G E GL ++ + G +L Sbjct: 205 CRAPLIGTHMSGATDYRKPDYASKGSVLVMGNEQAGLTDALANACDTLVRIPQVGRADSL 264 Query: 264 NVSNAAAVALYITQN 278 N++ A V L+ + Sbjct: 265 NLAVATGVMLFEARR 279 >gi|288554706|ref|YP_003426641.1| tRNA/rRNA methyltransferase [Bacillus pseudofirmus OF4] gi|288545866|gb|ADC49749.1| tRNA/rRNA methyltransferase [Bacillus pseudofirmus OF4] Length = 249 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 108/243 (44%), Gaps = 10/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + F+ G + V AL KI+ + ++ P + ++++ Sbjct: 2 KQEFILGKNPVIEALRAGHAINKIWIAEGSNKGQMTKVVQLAKEQGVLIQNAPKKKLEQL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V + HQG+ A +D ++LD + DPHN+G+I+R+A A Sbjct: 62 VD-SSNHQGVVASIAAYEYAEMDDLFALAEKRGEEPFFLILDEIEDPHNLGSIMRTADAA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + + +AK+++GA+E+IP +R++N+ + + G G + Sbjct: 121 GAHGIIIPKRRAVGLTQTVAKASTGAIEYIPVVRVTNIARTMDDLKKRGLWFAGTDAKGS 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 Q + I L++G+EGKG+ +E + + M G + +LN S AA++ +Y Sbjct: 181 ADYRQASFDMPIGLVIGSEGKGISRLIKEKCDFLIQIPMVGQVTSLNASVAASLLMYEVY 240 Query: 278 NHF 280 Sbjct: 241 RRR 243 >gi|281358305|ref|ZP_06244787.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] gi|281315132|gb|EFA99163.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] Length = 273 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 54/286 (18%), Positives = 108/286 (37%), Gaps = 25/286 (8%) Query: 1 MNL--ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS 58 M I+ +++ + H KLR R + + L G ++ Sbjct: 1 MEFVKITSTQNDSVK-----HVIKLR--------------DRRPREKEQLTVLEGYRELT 41 Query: 59 AALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115 A + A ++ L + ++ V V P ++K+ +E +A Sbjct: 42 RAREYGMEIVEVFFAPEHFLGQNEFPLLETFASEGVKVCQVAPFLLEKMAYRERPEGLIA 101 Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + + VR + L +V + V P N+G++LRSA A DG I + + + Sbjct: 102 IAKMKRHTLAEMPVRPNGLYLVAEAVEKPGNLGSMLRSADAAGVDGFIICNKCTDIYNPN 161 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + ++++GAL + + +A + +T+ + + + +A+++G Sbjct: 162 VIRASTGALF-SVPLAEAENQEAYDWLKKNNIRTLAATPHTDQIYTDVDMTQAVAIVVGT 220 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 E GL E + + M G I +LNV+ A + LY Sbjct: 221 EQTGLTELWMEHSDLPVRIPMLGKIDSLNVATATTILLYEAARQRN 266 >gi|239625543|ref|ZP_04668574.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519773|gb|EEQ59639.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 247 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K+F L ++ R H V V + +D+I Sbjct: 8 IEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVRTIVREAKKHDTIVNYVARERLDQISETG 67 Query: 109 AVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A A + D ++ L++LD + DPHN+GAI+R+A G+ Sbjct: 68 KHQGVIAYAAAYEYAEVEDMLKAAEEKGEPPFLILLDGIEDPHNLGAIIRTANLAGAHGV 127 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I KR + +A +AK+++GAL + P +++NLT A++ + G + + + Sbjct: 128 IIPKRRAAGLTATVAKTSAGALNYTPVAKVTNLTAAMEDLKKKGMWFVCA-DMGGDIMYK 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G EG+G+ +E A + M G I +LN S AA V Y Sbjct: 187 VNLKGPIGLVVGNEGEGVGKLVREHCDMTASIPMKGDIDSLNASVAAGVLAYEIVRQR 244 >gi|57651408|ref|YP_185464.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL] gi|87162210|ref|YP_493220.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194294|ref|YP_499086.1| hypothetical protein SAOUHSC_00513 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151220706|ref|YP_001331528.1| hypothetical protein NWMN_0494 [Staphylococcus aureus subsp. aureus str. Newman] gi|161508771|ref|YP_001574430.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141032|ref|ZP_03565525.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|262049574|ref|ZP_06022443.1| hypothetical protein SAD30_0368 [Staphylococcus aureus D30] gi|282924445|ref|ZP_06332117.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A9765] gi|284023541|ref|ZP_06377939.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132] gi|294850307|ref|ZP_06791041.1| RNA methyltransferase [Staphylococcus aureus A9754] gi|304381870|ref|ZP_07364517.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|75410372|sp|Q9AGT0|TRMHL_STAAE RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|81695161|sp|Q5HIE3|TRMHL_STAAC RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|13183698|gb|AAK15305.1|AF327733_2 YacO [Staphylococcus aureus subsp. aureus str. Newman] gi|57285594|gb|AAW37688.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus COL] gi|87128184|gb|ABD22698.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201852|gb|ABD29662.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373506|dbj|BAF66766.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160367580|gb|ABX28551.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|259162314|gb|EEW46887.1| hypothetical protein SAD30_0368 [Staphylococcus aureus D30] gi|269940104|emb|CBI48480.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus TW20] gi|282592856|gb|EFB97860.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A9765] gi|294822819|gb|EFG39254.1| RNA methyltransferase [Staphylococcus aureus A9754] gi|302750423|gb|ADL64600.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339656|gb|EFM05603.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196657|gb|EFU27004.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus CGS01] gi|320141604|gb|EFW33443.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus MRSA131] gi|320141768|gb|EFW33596.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus MRSA177] gi|329313252|gb|AEB87665.1| Putative trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus T0131] gi|329731031|gb|EGG67404.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 21189] Length = 248 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E+ + G H V A+ +P KI K V+TVP +D + Sbjct: 2 EDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 62 A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPHNLGSILRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S + + +AK+++GA+EH+P IR++NL + ++ GF G +++ Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239 Query: 278 NHF 280 Sbjct: 240 RKR 242 >gi|15923521|ref|NP_371055.1| putative tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus Mu50] gi|15926209|ref|NP_373742.1| hypothetical protein SA0490 [Staphylococcus aureus subsp. aureus N315] gi|21282216|ref|NP_645304.1| hypothetical protein MW0487 [Staphylococcus aureus subsp. aureus MW2] gi|49482761|ref|YP_039985.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49485396|ref|YP_042617.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82750239|ref|YP_415980.1| tRNA/rRNA methyltransferase [Staphylococcus aureus RF122] gi|148266991|ref|YP_001245934.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|150393038|ref|YP_001315713.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|156978860|ref|YP_001441119.1| hypothetical protein SAHV_0529 [Staphylococcus aureus subsp. aureus Mu3] gi|253315641|ref|ZP_04838854.1| hypothetical protein SauraC_05752 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731136|ref|ZP_04865301.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253732539|ref|ZP_04866704.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|255005325|ref|ZP_05143926.2| hypothetical protein SauraM_02620 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424645|ref|ZP_05601072.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 55/2053] gi|257427313|ref|ZP_05603712.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 65-1322] gi|257429949|ref|ZP_05606333.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus 68-397] gi|257435555|ref|ZP_05611603.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M876] gi|257795370|ref|ZP_05644349.1| RNA methyltransferase [Staphylococcus aureus A9781] gi|258408943|ref|ZP_05681224.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus A9763] gi|258420419|ref|ZP_05683362.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus A9719] gi|258422622|ref|ZP_05685528.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A9635] gi|258439340|ref|ZP_05690272.1| RNA methyltransferase [Staphylococcus aureus A9299] gi|258444080|ref|ZP_05692417.1| RNA methyltransferase [Staphylococcus aureus A8115] gi|258446348|ref|ZP_05694506.1| SpoU rRNA methylase [Staphylococcus aureus A6300] gi|258448441|ref|ZP_05696556.1| SpoU rRNA methylase [Staphylococcus aureus A6224] gi|258453797|ref|ZP_05701771.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A5937] gi|269202154|ref|YP_003281423.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus ED98] gi|282894966|ref|ZP_06303189.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A8117] gi|282903119|ref|ZP_06311010.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus C160] gi|282904909|ref|ZP_06312767.1| RNA methyltransferase TrmH family group 3 [Staphylococcus aureus subsp. aureus Btn1260] gi|282910172|ref|ZP_06317976.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913364|ref|ZP_06321153.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M899] gi|282915854|ref|ZP_06323619.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus aureus subsp. aureus D139] gi|282918319|ref|ZP_06326056.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus aureus subsp. aureus C427] gi|282923281|ref|ZP_06330961.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus C101] gi|282928868|ref|ZP_06336459.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A10102] gi|283769687|ref|ZP_06342579.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus subsp. aureus H19] gi|283957329|ref|ZP_06374782.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus A017934/97] gi|293500410|ref|ZP_06666261.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 58-424] gi|293509355|ref|ZP_06668066.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M809] gi|293523942|ref|ZP_06670629.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M1015] gi|295406908|ref|ZP_06816711.1| RNA methyltransferase [Staphylococcus aureus A8819] gi|295427069|ref|ZP_06819705.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275777|ref|ZP_06858284.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus subsp. aureus MR1] gi|297208755|ref|ZP_06925183.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246268|ref|ZP_06930117.1| RNA methyltransferase [Staphylococcus aureus A8796] gi|297590578|ref|ZP_06949217.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|300912845|ref|ZP_07130287.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|81649904|sp|Q6GBV6|TRMHL_STAAS RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|81651699|sp|Q6GJD7|TRMHL_STAAR RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|81704678|sp|Q7A1Q9|TRMHL_STAAW RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|81706174|sp|Q7A794|TRMHL_STAAN RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|81782082|sp|Q99W72|TRMHL_STAAM RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|13700422|dbj|BAB41720.1| SA0490 [Staphylococcus aureus subsp. aureus N315] gi|14246299|dbj|BAB56693.1| putative tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus Mu50] gi|21203652|dbj|BAB94352.1| MW0487 [Staphylococcus aureus subsp. aureus MW2] gi|49240890|emb|CAG39557.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49243839|emb|CAG42264.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82655770|emb|CAI80170.1| probable tRNA/rRNA methyltransferase [Staphylococcus aureus RF122] gi|147740060|gb|ABQ48358.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus JH9] gi|149945490|gb|ABR51426.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus JH1] gi|156720995|dbj|BAF77412.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253725101|gb|EES93830.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253729468|gb|EES98197.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|257272215|gb|EEV04338.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 55/2053] gi|257275506|gb|EEV06979.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 65-1322] gi|257279146|gb|EEV09747.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus 68-397] gi|257284746|gb|EEV14865.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M876] gi|257789342|gb|EEV27682.1| RNA methyltransferase [Staphylococcus aureus A9781] gi|257840294|gb|EEV64757.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus A9763] gi|257843609|gb|EEV68015.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus A9719] gi|257847194|gb|EEV71202.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A9635] gi|257847677|gb|EEV71676.1| RNA methyltransferase [Staphylococcus aureus A9299] gi|257850750|gb|EEV74695.1| RNA methyltransferase [Staphylococcus aureus A8115] gi|257854942|gb|EEV77887.1| SpoU rRNA methylase [Staphylococcus aureus A6300] gi|257858310|gb|EEV81197.1| SpoU rRNA methylase [Staphylococcus aureus A6224] gi|257864053|gb|EEV86807.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A5937] gi|262074444|gb|ACY10417.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus ED98] gi|282314149|gb|EFB44539.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus C101] gi|282317453|gb|EFB47825.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus aureus subsp. aureus C427] gi|282320150|gb|EFB50495.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus aureus subsp. aureus D139] gi|282322396|gb|EFB52718.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M899] gi|282325564|gb|EFB55872.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282331734|gb|EFB61245.1| RNA methyltransferase TrmH family group 3 [Staphylococcus aureus subsp. aureus Btn1260] gi|282589476|gb|EFB94565.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A10102] gi|282596074|gb|EFC01035.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus C160] gi|282762648|gb|EFC02785.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A8117] gi|283459834|gb|EFC06924.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus subsp. aureus H19] gi|283469824|emb|CAQ49035.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus ST398] gi|283790780|gb|EFC29595.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus A017934/97] gi|285816231|gb|ADC36718.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus aureus 04-02981] gi|290920905|gb|EFD97966.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M1015] gi|291095415|gb|EFE25676.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 58-424] gi|291467452|gb|EFF09967.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M809] gi|294968139|gb|EFG44165.1| RNA methyltransferase [Staphylococcus aureus A8819] gi|295128857|gb|EFG58487.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886700|gb|EFH25605.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176866|gb|EFH36124.1| RNA methyltransferase [Staphylococcus aureus A8796] gi|297576877|gb|EFH95592.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|300885949|gb|EFK81152.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|312439049|gb|ADQ78120.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60] gi|312829027|emb|CBX33869.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128824|gb|EFT84823.1| hypothetical protein CGSSa03_13067 [Staphylococcus aureus subsp. aureus CGS03] gi|315193895|gb|EFU24289.1| hypothetical protein CGSSa00_12717 [Staphylococcus aureus subsp. aureus CGS00] gi|323439802|gb|EGA97519.1| tRNA/rRNA methyltransferase [Staphylococcus aureus O11] gi|329727899|gb|EGG64348.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 21172] gi|329731950|gb|EGG68306.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 21193] Length = 248 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E+ + G H V A+ +P KI K V+TVP +D + Sbjct: 2 EDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 62 A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S + + +AK+++GA+EH+P IR++NL + ++ GF G +++ Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239 Query: 278 NHF 280 Sbjct: 240 RKR 242 >gi|17228654|ref|NP_485202.1| tRNA/rRNA methyltransferase [Nostoc sp. PCC 7120] gi|17130505|dbj|BAB73116.1| tRNA/rRNA methyltransferase [Nostoc sp. PCC 7120] Length = 335 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 70/266 (26%), Positives = 122/266 (45%), Gaps = 12/266 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARL 81 + ++ + +N +YG H V +AL N R + ++ T + Sbjct: 59 DSAPIRQYSDSAPIPKPQEDNDNDIIYGRHPVLSALQN-QRGLNRIWVTPRLRYDPRFHN 117 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLL 135 + + V + +D+I +A HQG+A + AP L ++ Sbjct: 118 LILQAKDNGAVIDEVDTKRLDQITD-QANHQGIAAQIAPYSYIDLYELIAQAKTVTDPVI 176 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +V D + DPHN+GAI+R+A A G++ +R + ++ + K A+GALE+ P R+ NL Sbjct: 177 VVADSITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVVKVAAGALENFPVARVVNL 236 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 AL+ + GF G ++ +PL I L++G+EG+GL TQ + + + Sbjct: 237 GRALEDLKEAGFWIYGTAAGGSEPLHTVSFRGPIVLVIGSEGEGLSMLTQRSCDVLVSIP 296 Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281 + G +LN S AA +ALY + Sbjct: 297 LMGKTPSLNASVAAGMALYEIFRQRS 322 >gi|314932755|ref|ZP_07840124.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus caprae C87] gi|313654436|gb|EFS18189.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus caprae C87] Length = 249 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E+ + G H V A+ + KI K V+TVP +D + Sbjct: 2 EDTVIVGRHAVKEAIVSGHAINKILIQDGIKKQQINEILKNAKAQKLIVQTVPKSKLDFL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D +++LD + DPHN+G+ILR+A A Sbjct: 62 S--NAPHQGVAALVAPYEYEDFDEFLQSQKNKDGFSTILILDGLEDPHNLGSILRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S + + +AK+++GA++H+P IR++NL+ + ++ GF G + + Sbjct: 120 GVDGVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKENGFWVAGTEASNA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 180 TDYRDLQADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239 Query: 278 NHF 280 Sbjct: 240 RKR 242 >gi|167647056|ref|YP_001684719.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31] gi|167349486|gb|ABZ72221.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31] Length = 262 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 41/251 (16%), Positives = 92/251 (36%), Gaps = 5/251 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K +++ + + + Q G+ V A++ + A + A Sbjct: 10 NATVKAVRALHMR-KEREQSGLFLAEGLKIVIEAIDCGHAPKILMYGPDAADHPMLQKAA 68 Query: 87 LP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V V + ++K+ ++ + + T + ++ + + V D Sbjct: 69 QACFKAGGEVIEVNREILEKVSRRDNPQAVVGVFTQVYTPLSAIVPESAPCWVAMQAVRD 128 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A A C G+I S ++ G++ I +++ + L Sbjct: 129 PGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRATMGSIF-AVKIAKASVQEFLAWRE 187 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 +W IG + + +++G E +GL P+ + M G +L Sbjct: 188 TWPGSVIGTLLTATVDHKSADYVKPSLILMGNEQQGLPPELAAACDVNVKIPMRGRADSL 247 Query: 264 NVSNAAAVALY 274 N+S A + +Y Sbjct: 248 NLSVATGIMIY 258 >gi|261206630|ref|ZP_05921328.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6] gi|289564991|ref|ZP_06445445.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium D344SRF] gi|294614952|ref|ZP_06694843.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1636] gi|260079123|gb|EEW66816.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6] gi|289163198|gb|EFD11044.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium D344SRF] gi|291592238|gb|EFF23856.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1636] Length = 286 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 129/283 (45%), Gaps = 17/283 (6%) Query: 13 FSLKDSHYAKL----RRNHR-DYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65 + H +K ++ +R KK NQ ++ F++G H AL Sbjct: 3 KERTNKHQSKRGFEDKKQNRYSNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGR 62 Query: 66 -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 K+F ++ + PVK VP Q ++ + VHQG+ L P Sbjct: 63 GNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETLSDH-GVHQGVVLAITPYEYL 121 Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 +LD + ++LD + DPHN G+ILR+A A DG+I K + + ++ Sbjct: 122 SLDQLIERTKEKKEDLFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVT 181 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA+EH+P R++NL A+Q++ GF G + K IAL++G EG Sbjct: 182 KTSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTGTNFQKWNAK-GSIALVIGNEG 240 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 KG+ P ++ + + M G +++LN S AA + +Y + Sbjct: 241 KGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283 >gi|330837615|ref|YP_004412256.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta coccoides DSM 17374] gi|329749518|gb|AEC02874.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta coccoides DSM 17374] Length = 258 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 104/244 (42%), Gaps = 15/244 (6%) Query: 51 LYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV--- 105 + G H + AL + ++ ARL+ A L VK + +D++V Sbjct: 5 ITGAHAIEEALKQASAGSTLYIQRGMGEKGARLERLAQLTGRVAVKKLSAAELDRMVPGI 64 Query: 106 ---------GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 G G A T L+MVLD + DPHN+GAILRSA Sbjct: 65 DHRGAVMDLGSVRRGGGRANTTTVEDFLGSLEEGKDSLVMVLDGITDPHNLGAILRSADQ 124 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F D ++ +R S + +A+ +SGA +++P ++N+ + M I + + Sbjct: 125 FGVDLVVVPERRSAQANETVARVSSGASQYVPTAVVTNI-TSTLTMMKDHGFWIYGADMN 183 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + E + +++G+EG G+ +E + + M G I +LNVS AA + +Y Sbjct: 184 GESSETIEFTGRCIIVMGSEGDGMSRLVRENCDFIVSIPMQGHIDSLNVSVAAGILMYEA 243 Query: 277 QNHF 280 + Sbjct: 244 RRQR 247 >gi|120611681|ref|YP_971359.1| RNA methyltransferase [Acidovorax citrulli AAC00-1] gi|326317073|ref|YP_004234745.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax avenae subsp. avenae ATCC 19860] gi|120590145|gb|ABM33585.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Acidovorax citrulli AAC00-1] gi|323373909|gb|ADX46178.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 250 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 107/242 (44%), Gaps = 11/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V L + I ++ ++A R + + I K+ G Sbjct: 7 VLFGFHAVGVRLKTAPQSIIEIYYEATRRDARMRQFLERAKEAGARLIEADALRIAKLAG 66 Query: 107 KEAVHQGLALETAPLLSPTLD--------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A A +LD LL+VLD V DPHN+GA LR A Sbjct: 67 SHGHQGVAARVEAVAQVHSLDELLEQLEADGVEKPLLLVLDGVTDPHNLGACLRVADGAG 126 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG S D+ + Sbjct: 127 AHAVIAPKDHAVGINATVAKVASGAAETMPYFMVTNLARTLGELKERNIWCIGTSDDAPR 186 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L + +AL+LGAEG G+R T++T + + M G +++LNVS A+ V LY Sbjct: 187 TLYEVDLKGPVALVLGAEGAGMRQLTRKTCDELVSIPMRGAVESLNVSVASGVCLYEALR 246 Query: 279 HF 280 Sbjct: 247 QR 248 >gi|149926252|ref|ZP_01914514.1| RNA methyltransferase TrmH, group 3 [Limnobacter sp. MED105] gi|149825070|gb|EDM84282.1| RNA methyltransferase TrmH, group 3 [Limnobacter sp. MED105] Length = 244 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 76/242 (31%), Positives = 115/242 (47%), Gaps = 9/242 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H VSA + + ++L K+ + D V ++K G Sbjct: 3 ILYGFHAVSARVKTAPASVEEVLVDQHRKDKRMQQFIDKVKAAGVKVSAADSDRLEKAAG 62 Query: 107 KEAVHQGLALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A + S L D + LL+VLD V DPHN+GA LRSA A + Sbjct: 63 HKQHQGVVAFAKELVKSNDLFEIIDTHGKNTLLLVLDGVTDPHNLGACLRSADAAGVHAV 122 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + K S + V++K A GA E IP I ++NL L+++ G IG + ++ L Sbjct: 123 VLPKDKSVGITPVVSKVACGAAETIPVITVTNLARTLEEIQDAGVWCIGTAGEATDTLYD 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHF 280 N IA +LGAEG G+R T+E + + M G +++LNVS A++V L+ Q F Sbjct: 183 ADLNGPIAWVLGAEGDGMRRLTREKCDQLVQIPMIGSVESLNVSVASSVCLFETLRQRQF 242 Query: 281 AK 282 +K Sbjct: 243 SK 244 >gi|312131975|ref|YP_003999315.1| RNA methyltransferase, trmh family, group 3 [Leadbetterella byssophila DSM 17132] gi|311908521|gb|ADQ18962.1| RNA methyltransferase, TrmH family, group 3 [Leadbetterella byssophila DSM 17132] Length = 263 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 61/260 (23%), Positives = 108/260 (41%), Gaps = 14/260 (5%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 KK + + F++GV++V L + LL + Sbjct: 9 VKKFHKHINRP-----NKEDFVFGVNSVIETLKSEQEIDKILLLKEMKHVEEIETLARNR 63 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVN 142 PV+ VP + ++++ HQG + + L V S L+++LD + Sbjct: 64 GIPVQKVPMEKLNRVT--MKNHQGAIAFVSAVNFAILSNVVTSIFESGESPLVLILDRIT 121 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N GAI RSA ++ R S + K++SGAL IP R ++L + ++ + Sbjct: 122 DVRNFGAICRSAECSGVHAVVVPARGSAQINGDAMKTSSGALNFIPVCRETDLINTVKYL 181 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + GFQ I + + + A+I+G+E G+ + + A + + G +++ Sbjct: 182 KNSGFQIISCTEKGNDLVYDADYSLPTAIIMGSEEDGISDALIDLSDFKAQIPLKGKVES 241 Query: 263 LNVSNAAAVALYITQNHFAK 282 LNVS AA V L+ K Sbjct: 242 LNVSVAAGVILFEAVRQKMK 261 >gi|319640626|ref|ZP_07995343.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A] gi|317387747|gb|EFV68609.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A] Length = 249 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 13/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGK 107 ++GV V A+ R+I ++L K+ + L + PV+ VP + I++I Sbjct: 2 IFGVRAVIEAIQAG-REIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERINRIT-- 58 Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ + + L + L ++LD + D N GAI R+ D Sbjct: 59 RKNHQGVVAFISSVTYQKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGAD 118 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II + S S +A K+++GAL +P R NLT+ ++ + GF+ + + Sbjct: 119 AIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLTNTIKYLKDCGFKIVAATEKGDYDY 178 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + D + +I+GAE G+ + + + G I++LNVS AA + +Y Sbjct: 179 TKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQR 238 >gi|296449818|ref|ZP_06891585.1| RNA methyltransferase [Clostridium difficile NAP08] gi|296877882|ref|ZP_06901902.1| RNA methyltransferase [Clostridium difficile NAP07] gi|296261305|gb|EFH08133.1| RNA methyltransferase [Clostridium difficile NAP08] gi|296431079|gb|EFH16906.1| RNA methyltransferase [Clostridium difficile NAP07] Length = 248 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 105/239 (43%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A+ + L+A K + ++ V +D++ Sbjct: 7 IEGRNPVIEAIKSDREIDKILIANSAKEGSIKKIIGMAKDKNIIIQYVDKHKLDEVSTSH 66 Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + LD ++LD + DPHN+G+I+R+A A G Sbjct: 67 S-HQGVIAYASEHKYYELDELIDLVKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHG 125 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR S + V+AK+++GA+E++P +++N+ + ++++ G + Sbjct: 126 VIIPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAA-DMDGETFY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + +++G+EG G+ ++ + + M G + +LN S A + LY Sbjct: 185 KQNLTGPLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQR 243 >gi|255014012|ref|ZP_05286138.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7] gi|256839648|ref|ZP_05545157.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13] gi|298375345|ref|ZP_06985302.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_19] gi|256738578|gb|EEU51903.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13] gi|298267845|gb|EFI09501.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_19] Length = 248 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 106/244 (43%), Gaps = 11/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 EN ++G+ V A+ KI + L++ ++ PV+ VP + +D+ Sbjct: 2 KENEMVFGIRAVIEAIQADKEVDKILVKRDLQGDLSKELFEVLRGREIPVQRVPAERLDR 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ + + +L+ + +++LD V D N GAI R+ Sbjct: 62 LT--RKNHQGVIAFMSAVTYQSLEDIIPFVYEQGKDPFIVLLDGVTDVRNFGAIARTCEC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D I+ + S S +A K+++GAL +P + ++ A++ + G + S + Sbjct: 120 AGVDTIVIPAKGSVSVNADAIKTSAGALHVLPVCKEKSINQAIRFLQQSGVKVFAASEKA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +A+++GAE G+ P+ +M + G I +LNVS A ++ +Y Sbjct: 180 AENYTAVKYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVYEV 239 Query: 277 QNHF 280 Sbjct: 240 VRQR 243 >gi|15673854|ref|NP_268029.1| tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|12724905|gb|AAK05970.1|AE006417_2 tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|326407365|gb|ADZ64436.1| tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis CV56] Length = 242 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 115/244 (47%), Gaps = 13/244 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102 +YG+H V+ AL + +L ++ + + + P ++ Sbjct: 2 ENTDLIYGLHAVTEAL--NGDLVNKLYVQEDLRGKNVEKIKELARLKKVNISWTPKTELN 59 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 K+ + VHQG + L+ + ++ +++LD + DPHN+G+I R+A A Sbjct: 60 KLT-ENGVHQGFMARVSEFAYADLEKILPALAEKSDATILILDELTDPHNLGSIARTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II K + ++ K+++GAL+H+P +R++NL+ L K+ + F G D Sbjct: 119 TGVDAIIIPKHRAVGITSTAVKASTGALQHVPIVRVTNLSQTLDKLKAANFWVFGTDMDG 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + K K+ALI+G EG G+ ++ M + M G +++LN S AA++ +Y Sbjct: 179 TVYSKWNTK-GKVALIIGNEGHGIGQNLKKQVDEMITIPMTGHVQSLNASVAASILMYEI 237 Query: 277 QNHF 280 + Sbjct: 238 FRNR 241 >gi|332710004|ref|ZP_08429960.1| rRNA methylase [Lyngbya majuscula 3L] gi|332351375|gb|EGJ30959.1| rRNA methylase [Lyngbya majuscula 3L] Length = 259 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 52/256 (20%), Positives = 108/256 (42%), Gaps = 6/256 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWD 84 + K+++ + + + Q + L G H ++ A + ++ A +L D Sbjct: 7 NPLVKEIRKLH-RVKGRRQQDLFLLEGTHLLAEACAVDYPLVTLCYTSEWLEAHPQLSQD 65 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 A++ V+ V + I V + TA L + + + L + L+ + DP Sbjct: 66 ASV-RSQRVEVVSQSVLKAIA--TTVEPDGVVATATRLPLSPKPLNSLSLGLALETIQDP 122 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G I+R+AVA +G+ + ++ + +++ G +P +L + + + Sbjct: 123 GNLGTIIRTAVAAGAEGLWLSSDSVELDNPKVLRASVGQWFRLPMAVTPHLPTLVAQAQA 182 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G Q + D+K ++LG E GLR +TA ++ + +++LN Sbjct: 183 QGIQVVATVPDAKVSYWDIDWRCPSLILLGNEAAGLREDLVKTADQQVNIPLMPGVESLN 242 Query: 265 VSNAAAVALYITQNHF 280 V+ AAA+ LY + Sbjct: 243 VAIAAALMLYEAKRQR 258 >gi|255654143|ref|ZP_05399552.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-23m63] Length = 245 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 105/239 (43%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A+ + L+A K + ++ V +D++ Sbjct: 4 IEGRNPVIEAIKSDREIDKILIANSAKEGSIKKIIGMAKDKNIIIQYVDKHKLDEVSTSH 63 Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + LD ++LD + DPHN+G+I+R+A A G Sbjct: 64 S-HQGVIAYASEHKYYELDELIDLVKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHG 122 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR S + V+AK+++GA+E++P +++N+ + ++++ G + Sbjct: 123 VIIPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAA-DMDGETFY 181 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + +++G+EG G+ ++ + + M G + +LN S A + LY Sbjct: 182 KQNLTGPLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQR 240 >gi|21911205|ref|NP_665473.1| SpoU family tRNA/rRNA methyltransferase [Streptococcus pyogenes MGAS315] gi|28896582|ref|NP_802932.1| tRNA/rRNA methyltransferase [Streptococcus pyogenes SSI-1] gi|21905417|gb|AAM80276.1| putative tRNA/rRNA methyltransferase, spoU family [Streptococcus pyogenes MGAS315] gi|28811836|dbj|BAC64765.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes SSI-1] Length = 248 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +L K++ + + P +T+ ++ Sbjct: 10 NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 69 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + +D + L+++LD + DPHN+G+ILR+A A + Sbjct: 70 -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K S + V++K+++GA+EHIP R++NL+ L K+ + GF G + Sbjct: 129 GVIIPKHRSVCVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGFWIFGTDMNGTPSD 188 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 N K+AL++G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 189 CWNT-NGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247 >gi|262382068|ref|ZP_06075206.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 2_1_33B] gi|262297245|gb|EEY85175.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 2_1_33B] Length = 248 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 105/244 (43%), Gaps = 11/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 EN ++G+ V A+ KI + L++ ++ PV+ VP + +D+ Sbjct: 2 KENEMVFGIRAVIEAIQADKEVDKILVKRDLQGDLSKELFEVLRGREIPVQRVPAERLDR 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ + + +L+ + +++LD V D N GAI R+ Sbjct: 62 LT--RKNHQGVIAFMSAVTYQSLEDIIPFVYEQGKDPFIVLLDGVTDVRNFGAIARTCEC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D I+ + S S +A K+++GAL +P + ++ ++ + G + S + Sbjct: 120 AGVDAIVIPAKGSVSVNADAIKTSAGALHVLPVCKEKSINQVIRFLQQSGVKVFAASEKA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +A+++GAE G+ P+ +M + G I +LNVS A ++ +Y Sbjct: 180 AENYTAVKYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVYEV 239 Query: 277 QNHF 280 Sbjct: 240 VRQR 243 >gi|326790453|ref|YP_004308274.1| RNA methyltransferase, TrmH family, group 3 [Clostridium lentocellum DSM 5427] gi|326541217|gb|ADZ83076.1| RNA methyltransferase, TrmH family, group 3 [Clostridium lentocellum DSM 5427] Length = 297 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 68/297 (22%), Positives = 130/297 (43%), Gaps = 26/297 (8%) Query: 8 KSEKIFSLK-DSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------PENL-----FLYGV 54 ++ K K + + + ++ K+ +K T PE+ L+G Sbjct: 2 RNGKAKGKKQERTDKQPSQENKFNKRESFKKEKPEFTRGYNRRSVVPEDFEIDENILFGR 61 Query: 55 HTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 + V AL + R+I ++L K A V +D++ G+E H Sbjct: 62 NAVIEALKS-EREIDKILIQKGEKEGSVIKIISAAKAKGIVTLEVEKSKLDELTGREK-H 119 Query: 112 QGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ A +++ + +++L+++ DPHN+GAI+R+A GII Sbjct: 120 QGVVAYVAAHEYVSVEEILEDAAAKGEPAFVLILENIQDPHNLGAIIRTAHTAGVHGIII 179 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 KR + + +AK+++GALEH ++SN+ ++ + G K L +E Sbjct: 180 PKRRAVGLTGTVAKASAGALEHTKVAKVSNIAQTIKDLQQKGLWIACA-DMDGKVLFEEN 238 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 I +++G+EG+G+ T++T + + M G + +LN S AA++ +Y Sbjct: 239 LTGPIGIVVGSEGEGISKLTKQTCDYVVSVPMYGKVTSLNASVAASLMVYEVVRQRN 295 >gi|212550964|ref|YP_002309281.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549202|dbj|BAG83870.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 247 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 104/245 (42%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDANLPHPFPVKTVPPQTIDK 103 E ++G + A+ + L+ ++ L+ ++ ++ VP + +D+ Sbjct: 2 KEFEMIFGKRAIIEAIQIGKKIDKILICKGLQSKLSHELFNIIKETDILIRRVPREKLDR 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156 + HQGL + + L+++ L+++LD + D HN GAI RS Sbjct: 62 LT--RRNHQGLVAFISTITYQKLESIVPFLYEEGKVPLILLLDGITDVHNFGAIARSCEC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + I+ S S +A K ++GAL + R SN+ +A++ + G++ + + Sbjct: 120 AGVNAIVIPLVNSVSVNADAIKISAGALMSLSVCRESNIMNAVKFLKLCGYKVYAATEKA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + A+++G+E KG+ P + + G I +LNVS A AV LY Sbjct: 180 TTLYTKTDYTYPTAIVIGSEDKGISPAVLYLCDKLVKIPTLGNITSLNVSAATAVLLYEV 239 Query: 277 QNHFA 281 Sbjct: 240 LRQRT 244 >gi|312135729|ref|YP_004003067.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor owensensis OL] gi|311775780|gb|ADQ05267.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor owensensis OL] Length = 253 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 103/242 (42%), Gaps = 12/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL + + I ++ + +A + D VK V IDK+ + Sbjct: 4 IEGKNPVKEALKSGA-MITEVYISNSAKDKETAQIIDLCRQRGVVVKFVDRNKIDKMA-Q 61 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+ D + + L++LD + DP N G+I+RSA Sbjct: 62 TKNPQGVIAIAREFEYCDTDDILLEARKKGEAAFLVLLDGITDPQNFGSIIRSAHLCGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ R S + + K+++GA+E++ R+ NL ++++ G + S KP+ Sbjct: 122 GIVIEARNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFAADASSPKPV 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +++G+EGKG+ +E A + + G I + N S AA + + Sbjct: 182 YECDFTIPACIVIGSEGKGISRLVKEGADFLIKIPQKGYINSFNASVAAGIIFFEVLKQR 241 Query: 281 AK 282 K Sbjct: 242 LK 243 >gi|290893297|ref|ZP_06556283.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|290557105|gb|EFD90633.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] Length = 252 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 57/278 (20%), Positives = 109/278 (39%), Gaps = 26/278 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K++++ + K + + + G H V A Sbjct: 1 MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +LL + +W L + V + + I ++ + QG+ A Sbjct: 42 LRQDG-LVLELLVSSGVSVPEEW---LKGDYDVFEISTE-ISHLISETMTEQGVFAVVAT 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L+++D V DP N+G ++R+A A D ++ K + + + +S Sbjct: 97 SE--PDMMLLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRST 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP I+ + D K L K D +AL++G EG G+ Sbjct: 155 QGSHFHIPVIQADLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGI 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+ Q+ + ++ + G ++LNV+ AA + LY + Sbjct: 215 SPELQDRLSEKVYITIYGDSESLNVAVAAGILLYGLRK 252 >gi|254283118|ref|ZP_04958086.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium NOR51-B] gi|219679321|gb|EED35670.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium NOR51-B] Length = 252 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 114/243 (46%), Gaps = 14/243 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++G+H V +AL + + +++ K + R ++ P +D++V Sbjct: 5 IFGLHAVESALKHRPEALLRVMLQKGRDDKRMRELETLARNQGVTIERRPRTELDRLVD- 63 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQ---------LLMVLDHVNDPHNIGAILRSAVAFS 158 HQG+ E LL+VLD V DPHN+GA LRSA A Sbjct: 64 -GRHQGVVAEIEQGADGPPLDEAGLMQRVAETSTPLLLVLDGVTDPHNLGACLRSADAAG 122 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + + K A GA E +P++R++NL L + + G +G + D+++ Sbjct: 123 VTAVIVPKNNSADLTPAVRKVACGAAEAVPFVRVTNLVRTLAALQAEGVWVVGTTGDAEQ 182 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L + IAL++GAEG+G+R TQE + +L M G + +LNVS A V L+ Sbjct: 183 SLYAQDFAGPIALVMGAEGQGMRRLTQEQCDFLVYLPMAGEVSSLNVSVATGVCLFEAVR 242 Query: 279 HFA 281 + Sbjct: 243 QRS 245 >gi|27364705|ref|NP_760233.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio vulnificus CMCP6] gi|37681244|ref|NP_935853.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio vulnificus YJ016] gi|320155098|ref|YP_004187477.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio vulnificus MO6-24/O] gi|52783298|sp|Q7MH13|RLMB_VIBVY RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|52783314|sp|Q8DCT8|RLMB_VIBVU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|27360850|gb|AAO09760.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio vulnificus CMCP6] gi|37199995|dbj|BAC95824.1| rRNA methylase [Vibrio vulnificus YJ016] gi|319930410|gb|ADV85274.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio vulnificus MO6-24/O] Length = 247 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 115/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L+ + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVRAVLDKEPERFIEAYVLKGRQDDRLMPILNELQMVGVSLQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A HQG+ P + A S LL++LD V DPHN+GA LR+A A Sbjct: 63 A-HGANHQGIIARVKPAKQLNENDLDDILAKHASPLLLILDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRHLQEQGIWIVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGAVSSLNVSVASGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|319946269|ref|ZP_08020509.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus australis ATCC 700641] gi|319747651|gb|EFV99904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus australis ATCC 700641] Length = 242 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 72/241 (29%), Positives = 123/241 (51%), Gaps = 9/241 (3%) Query: 46 PENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V+ AL N K++ + D + P +T+ ++ Sbjct: 2 EKNDIVYGVHAVTEALIANTGNKLYIQDDLRGKNVEKIKDLAADKKVSISWTPKKTLQEM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG L + L+ +++ LL++LD + DPHN+G+ILR+A A Sbjct: 62 T-EGAVHQGFVLRVSEFAYTDLNEILTQVANQDNPLLLILDGLTDPHNLGSILRTADATQ 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I K + + V+AK+++GA+EH+P R++NL+ L K+ GF G + Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEAGFWIFGTDMNGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y Sbjct: 181 SHKWNT-SGKLALIIGNEGKGISTNIKKQVDEMITIPMQGHVQSLNASVAAAILMYEVFR 239 Query: 279 H 279 + Sbjct: 240 N 240 >gi|225026975|ref|ZP_03716167.1| hypothetical protein EUBHAL_01231 [Eubacterium hallii DSM 3353] gi|224955711|gb|EEG36920.1| hypothetical protein EUBHAL_01231 [Eubacterium hallii DSM 3353] Length = 257 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 98/256 (38%), Gaps = 8/256 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K + + + ++ + + + G P +I + T+ + + Sbjct: 6 SNAKVKNIMNLKKSAKARKKEKCFLVEGPRMFFEI---PKDRIEECYLTEEFEDKYAEEL 62 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNSQLLMVLDHVNDP 144 N + + + + + +A+ S L + +L+++ DP Sbjct: 63 N---GWHYELISENVCKHLSDTKTPQGVIAVVRRTEPSIEELLHKEKNPCFFLLENLQDP 119 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G I+R+A GII + + + +S GA+ +P++ +L + + ++ Sbjct: 120 GNLGTIVRTAEGAGVTGIIMNRETVDIYNPKVIRSTMGAIFRVPFVIADSLPEVIFQLKQ 179 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G +Q+ D A ++G EG GL + A + M G +++LN Sbjct: 180 NGVSVYAGHLKGDVFYKQD-YRDGSAFLIGNEGNGLTDEITALADYKIKIPMKGKVESLN 238 Query: 265 VSNAAAVALYITQNHF 280 + +A + +Y T Sbjct: 239 AAVSATILMYETMRQR 254 >gi|299067474|emb|CBJ38673.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia solanacearum CMR15] Length = 259 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 100/258 (38%), Gaps = 8/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLD 82 R++ +K +++ + ++ + L G+H V+A L+ L++ ++ A + Sbjct: 6 SRDNAVFKHLKALSGSTQQRRRAGQSVLDGIHLVAAYLDAGHVPAQCLVSERHLAHPEVA 65 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 P V + ++ V G+ L R ++LD + Sbjct: 66 PLLARIDPQSVVLLADSLFAQLT---TVVNGIDLMALIETPEGHLPHRIEHDCVILDGIQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILR A A + T + + SA ++A GA H+ + ++ Sbjct: 123 DAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNVVEHCTFESVHARL 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 H T + + + N + + G EG G+ + T+ + PG +++ Sbjct: 183 HVPLLATSSHARHAVFDMP---LNKPVGWVFGNEGAGVSEQWLS-VTTPISIPQPGGMES 238 Query: 263 LNVSNAAAVALYITQNHF 280 LNV AAA+ L+ Sbjct: 239 LNVGAAAAICLFEAVRQR 256 >gi|293572686|ref|ZP_06683654.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E980] gi|291607272|gb|EFF36626.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E980] Length = 286 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 75/283 (26%), Positives = 129/283 (45%), Gaps = 17/283 (6%) Query: 13 FSLKDSHYAKL----RRNHR-DYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65 + H +K ++ +R KK NQ ++ F++G H AL Sbjct: 3 KERTNKHQSKRGFEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGR 62 Query: 66 -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 K+F ++ + PVK VP Q ++ + VHQG+ L P Sbjct: 63 GNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETLSNH-GVHQGVVLAITPYEYL 121 Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 +LD + ++LD + DPHN G+ILR+A A DG+I K + + ++ Sbjct: 122 SLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVT 181 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA+E++P R++NL A+Q++ GF G + K IAL++G EG Sbjct: 182 KTSTGAVEYVPVARVTNLVQAVQQLKEIGFWVFGTDMTGTNFQKWNAK-GSIALVIGNEG 240 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 KG+ P ++ + + M G +++LN S AA + +Y + Sbjct: 241 KGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283 >gi|195952691|ref|YP_002120981.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobaculum sp. Y04AAS1] gi|195932303|gb|ACG57003.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobaculum sp. Y04AAS1] Length = 251 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 106/237 (44%), Gaps = 5/237 (2%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ ++G + V AL L+A + + D V+ P Q ++++ Sbjct: 7 QSYVIWGRNPVIEALVAGQSMEKILIAHDSKAPKELLDLAKERGIKVQIAPRQKLEELAN 66 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A+ + P + R + +VLDH+ DP N+G+I R+ F G+ Sbjct: 67 TKKTQGVVAILSPITYVPEEELFRKTIEEKGFFVVLDHITDPQNVGSIARTVEVFGGIGL 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + K S +AV+ KS+SGA+ H+ + +++ A++ G + K + + Sbjct: 127 LIPKDRSAPINAVVVKSSSGAIFHLKISKTPSISKAIKTFKEMGGW-VYALEKGGKDITK 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + ++LG+EG+G+ E + + M G + +LNVS A A+ L+ + Sbjct: 186 VDFAYPMCIVLGSEGEGVSKNVLEHSDVRVSIPMKGKVTSLNVSAAGAICLWEVYKN 242 >gi|150007357|ref|YP_001302100.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|301310641|ref|ZP_07216580.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 20_3] gi|149935781|gb|ABR42478.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|300832215|gb|EFK62846.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 20_3] Length = 248 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 106/244 (43%), Gaps = 11/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 EN ++G+ V A+ KI + L++ ++ PV+ VP + +D+ Sbjct: 2 KENEMVFGIRAVIEAIQADKEVDKILVKRDLQGDLSKELFEVLRGREIPVQRVPAERLDR 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ + + +L+ + +++LD V D N GAI R+ Sbjct: 62 LT--RKNHQGVIAFMSAVTYQSLEDIIPFVYEQGKDPFIVLLDGVTDVRNFGAIARTCEC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D I+ + S S +A K+++GAL +P + ++ A++ + G + S + Sbjct: 120 AGVDAIVIPAKGSVSVNADAIKTSAGALHVLPVCKEKSINQAIRFLQQSGVKVFAASEKA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +A+++GAE G+ P+ +M + G I +LNVS A ++ +Y Sbjct: 180 AENYTAVKYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVYEV 239 Query: 277 QNHF 280 Sbjct: 240 VRQR 243 >gi|322373861|ref|ZP_08048396.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150] gi|321277233|gb|EFX54303.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150] Length = 245 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 56/274 (20%), Positives = 106/274 (38%), Gaps = 31/274 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K++ I + + + +H L G H A Sbjct: 1 MEIIQSKQNASIKTARKL-------------------LQGKHRKTS--YLLEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +I Q+ + R+ + VK V P+ + ++ + QG+ E A Sbjct: 40 -KASGAEILQVFVLEEMADRVVDVS------KVKLVSPEVLKELCETQ-TPQGIVAEVAK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 +++ LL+ + V DP N+G ++R+A A DG+ + + + + +S Sbjct: 92 ESQSLPESLSGKYLLL--EDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R S +D AL++G EG+G+ Sbjct: 150 QGSHFHLPIYRGPIFEMIETCQKQGFPILATTLSTVSVDYRAVKTDDNFALVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E+A + H++MPG ++LNV+ AA + ++ Sbjct: 210 SQDMAESANQLVHINMPGRAESLNVAVAAGILMF 243 >gi|224023845|ref|ZP_03642211.1| hypothetical protein BACCOPRO_00562 [Bacteroides coprophilus DSM 18228] gi|224017067|gb|EEF75079.1| hypothetical protein BACCOPRO_00562 [Bacteroides coprophilus DSM 18228] Length = 250 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 60/244 (24%), Positives = 107/244 (43%), Gaps = 11/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 +N ++GV V A+ K+ ++ L++ + PV+ VP + I++ Sbjct: 3 EKNEMIFGVRAVIEAIQAGKEIDKVLVKKDIQSDLSKELFAVLKDTFIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I + HQG+ +P+ L + LL++LD V D N GAI R+ Sbjct: 63 IT--KKNHQGVIAFISPITYQRTEDIVPFLFEQGKNPLLIMLDGVTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II + S S +A K+++GAL +P R +NLT+ ++ + GF+ + + Sbjct: 121 AGVDAIIIPSKNSVSVNADAIKTSAGALHTLPVCRENNLTNTIKFLKESGFKIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +I+GAE G+ + + + G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYQGPTCIIMGAEDTGVPYEHLALCDEWIKIPLFGSIESLNVSVAAGILIYEA 240 Query: 277 QNHF 280 Sbjct: 241 VKQR 244 >gi|254252073|ref|ZP_04945391.1| rRNA methylases [Burkholderia dolosa AUO158] gi|124894682|gb|EAY68562.1| rRNA methylases [Burkholderia dolosa AUO158] Length = 260 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 102/257 (39%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ YK++++ + H + L G H SA L+ + + AT+ AL + Sbjct: 6 SRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGAAPELCV-ATEGALQHAEA 64 Query: 84 DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A + + V P + + G L P + V ++ +++ D V Sbjct: 65 QAIVARVDAQRVVTLPDALFGQLSNVVNGVGFLLLVDRPAQPLPERVAHTSVVL--DGVQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA A + + + S+ + +S GA + ++ Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVAPDVLAGRL 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 S + + + +A + G EG G+ ++ AT + PG +++ Sbjct: 183 DVPI---ALTDSHGAQAIYDCDLSQPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ AAAV L+ Sbjct: 240 LNVAAAAAVCLFEQVRQ 256 >gi|332798670|ref|YP_004460169.1| tRNA/rRNA methyltransferase SpoU [Tepidanaerobacter sp. Re1] gi|332696405|gb|AEE90862.1| tRNA/rRNA methyltransferase (SpoU) [Tepidanaerobacter sp. Re1] Length = 271 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 108/255 (42%), Gaps = 4/255 (1%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K ++ + + + + G+ V+ ++ + F +++ + + + L Sbjct: 11 KLVKDLIKSKKARMKNRCFIVEGLKNVAESIKSNYEVRFVVISDDFFKSNIGFIKILSKQ 70 Query: 91 F---PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V +++ QG+ + D + + L++ LD + DP N+ Sbjct: 71 VCPNRLYQVRDNLFNELTD-TVTPQGIMAVINFKDTNIEDVQKENFLMIALDRIQDPGNM 129 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A D I+ ++ + + +SA G+L H+P I+ +L L ++ G Sbjct: 130 GTIIRTADAAGADAIVIGQKCVDIYNPKVVRSAMGSLFHVPIIQTDDLIKTLIELKEKGG 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + +KKP +++G+E +G+ + + + + MPG ++LNV+ Sbjct: 190 KVVTTHLKAKKPYYDVNYMACTIIVMGSEDEGVSKEIVRISDELVKIPMPGSAESLNVAI 249 Query: 268 AAAVALYITQNHFAK 282 A + ++ K Sbjct: 250 AHGIMVFEAVKQRIK 264 >gi|330445012|ref|ZP_08308666.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493130|dbj|GAA03163.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 244 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 113/242 (46%), Gaps = 8/242 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 N ++G+H V A L + + ++ A K RL N ++ + +D Sbjct: 3 NEMIFGIHAVKAVLASDPARFIEVFALKGRQDERLMPVINELQMLGITIQEAGRKALDDK 62 Query: 105 VGKEAVHQGLALETAPLLSP-----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 V + +A L A + + LL++LD V DPHN+GA LR+A A Sbjct: 63 VKGASHQGIVARVRPGKQYNENDLDDLLAGKENPLLLILDGVTDPHNLGACLRNADAAGA 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 ++ K S +A +K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 123 IAVVVPKDRSAQLNATASKVACGAAEIVPLVRVTNLARTMRALQEKGVWIVGTAGEATHD 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +A+++GAEG+G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 183 IYHSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQ 242 Query: 280 FA 281 + Sbjct: 243 RS 244 >gi|262189979|ref|ZP_06048286.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae CT 5369-93] gi|262034136|gb|EEY52569.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae CT 5369-93] Length = 247 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTVPPQTIDKI 104 N +YG+H V+A L + + K RL N ++ + + +D Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQG+ P + A LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-EGANHQGVIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A V L+ Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|163845980|ref|YP_001634024.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl] gi|222523706|ref|YP_002568176.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl] gi|163667269|gb|ABY33635.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus J-10-fl] gi|222447585|gb|ACM51851.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl] Length = 260 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 87/258 (33%), Gaps = 10/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82 + K ++S + +RH + + + GV V+ AL + L A Sbjct: 6 SPANHHVKWLRSLAESARHRRRERSFVIEGVRLVTDALTAGAEVRLVLYAPDQLATTTAG 65 Query: 83 -WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 N P + QG+ + L +VLD + Sbjct: 66 TALLNRLRHLPHCFPATPAVIVAAADTEQPQGVVAAVTWP-----ELPPRPGLRLVLDAI 120 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G +LRSA A ++ + +A++A GA +P T + Sbjct: 121 QDPGNVGTLLRSAAAAGVGLVMCAPGTVDPFNPKVARAAMGAHFLVPLRVSPWETIRAE- 179 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + S ++P ALI+G E GL + A + M G I+ Sbjct: 180 --LQSYTVYAADSAGQQPYYAVDWRQPAALIVGNEAHGLSEPARALAHQTITIPMSGSIE 237 Query: 262 ALNVSNAAAVALYITQNH 279 +LN A ++ L+ Sbjct: 238 SLNAGVAGSIILFEALRQ 255 >gi|218234920|ref|YP_002369360.1| RNA methyltransferase, TrmH family [Bacillus cereus B4264] gi|218162877|gb|ACK62869.1| RNA methyltransferase, TrmH family [Bacillus cereus B4264] Length = 265 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKTG--IVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKR 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENDVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|188584816|ref|YP_001916361.1| RNA methyltransferase, TrmH family, group 3 [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349503|gb|ACB83773.1| RNA methyltransferase, TrmH family, group 3 [Natranaerobius thermophilus JW/NM-WN-LF] Length = 247 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 13/241 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + G + V A+ +RK+F++ +K+ H + VP +DK+V Sbjct: 6 LVPGKNPVVEAIR-GNRKVFRIYISKDSNKNFQDEMLKLAQQHNINLDKVPLDRLDKMV- 63 Query: 107 KEAVHQGLALETAPLLSPTLD--------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 HQG+ ET P LD + L++LDH+ DP N GAI+R+A A Sbjct: 64 PTTEHQGIVAETEPFKYSQLDTVLKGFDYNNQKPLTLLILDHLTDPQNFGAIIRTADAVG 123 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 DG+I KR S + + K++SGA EH+P I++SNL + K+ +G D + Sbjct: 124 VDGVIIPKRRSVDVNPTVMKASSGAAEHVPIIKVSNLRQTISKLKEQWIWILGTDIDGDR 183 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +E N +AL++G E G+ P ++ +A++ M G + +LN S A AV LY Sbjct: 184 GIFEENYNIPLALVVGNEASGMSPLVKKECDFIANIPMIGRVNSLNASVATAVVLYEIYR 243 Query: 279 H 279 Sbjct: 244 Q 244 >gi|148828043|ref|YP_001292796.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae PittGG] gi|148719285|gb|ABR00413.1| hypothetical protein CGSHiGG_07820 [Haemophilus influenzae PittGG] Length = 246 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 117/240 (48%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ + + + L++VLD V DPHN+GA LR+A A + Sbjct: 65 E-VHQGIIARVQAAKELNENDLDEILSNKQNPLVLVLDGVTDPHNLGACLRTADAAGAEA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220 +I K S ++++ K A GA E +P IR++NL+ + +G + ++ + + Sbjct: 124 VIVPKDKSAQLTSIVRKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|17227671|ref|NP_484219.1| rRNA methylase [Nostoc sp. PCC 7120] gi|17135153|dbj|BAB77699.1| rRNA methylase [Nostoc sp. PCC 7120] Length = 273 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 95/257 (36%), Gaps = 5/257 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWD 84 + K+++ + ++ + L G H + A ++ A WD Sbjct: 19 QNSLVKQIRKLH-STKERHKQGLFLLEGTHLLEEACAMDYPLEVVCCTPEWEANHTALWD 77 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + V + + I Q + S V + +++ L+ + DP Sbjct: 78 DACSRCDRYEIVSEEVLQAIA---TTVQPDGVVATAKRSEQQSQVPFTGVVLALETIQDP 134 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G I+R+A A G++ ++ ++ + ++++G + +L +Q Sbjct: 135 GNLGTIIRTAAAAGASGLLLSQDSVDLDNPKVLRASAGQWFRLATAVSEDLKATVQLCQQ 194 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G Q + +K + ++LG EG GL P A + + +++LN Sbjct: 195 AGMQVVATLPTAKLTYWEIDWRKPSLILLGNEGAGLSPDLAAMADQEVKIPLSPGVESLN 254 Query: 265 VSNAAAVALYITQNHFA 281 V+ +A+ LY Q Sbjct: 255 VAITSALMLYEVQRQLN 271 >gi|261209460|ref|ZP_05923823.1| RNA methyltransferase [Enterococcus faecium TC 6] gi|289566871|ref|ZP_06447279.1| RNA methyltransferase [Enterococcus faecium D344SRF] gi|260076588|gb|EEW64352.1| RNA methyltransferase [Enterococcus faecium TC 6] gi|289161320|gb|EFD09212.1| RNA methyltransferase [Enterococcus faecium D344SRF] Length = 254 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 103/276 (37%), Gaps = 24/276 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I L K ++ + L G H + A Sbjct: 1 MKEIQSVKNPRIKEL-------------------KKLHKKKYREEKAEYLLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ + + V + + + LA+ T Sbjct: 42 -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQGILAVMTL- 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + D S ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 100 ---TSEDTPDFSGGWLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P ++ ++ L++ K + A+I+G EG+G+ Sbjct: 157 QGSNYHLPVLQKDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGV 216 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + ++ M G ++LNV AA + LY Sbjct: 217 SQEILSSTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252 >gi|154485051|ref|ZP_02027499.1| hypothetical protein EUBVEN_02772 [Eubacterium ventriosum ATCC 27560] gi|149734004|gb|EDM50123.1| hypothetical protein EUBVEN_02772 [Eubacterium ventriosum ATCC 27560] Length = 247 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 11/245 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + E L G + V A K+F L K H + V + +D Sbjct: 2 RYEEFTLEGRNAVIEAYRAGKTIDKLFVLEHCKEGSMNTVLREAKKHDTVINYVKKERLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ + HQG+ A T+D + S +++LD + DPHN+GAI+R+A Sbjct: 62 QMS-ETGKHQGVIGYLAAYEYATVDEILDKAREKGESPFVILLDDIEDPHNLGAIIRTAN 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 G+I K + +A +AK+++GAL + P +++N++ ++++ G + Sbjct: 121 LAGAHGVIIPKHRASGLTATVAKTSAGALNYTPVAKVTNISKTIEELKKEGMWFVCA-DM 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + I L++G EGKG+ +E +A + M G I +LN S A V Y Sbjct: 180 GGTTMYDLDLKGSIGLVIGNEGKGVSRLVKEKCDFVASIPMFGDIDSLNASVATGVLAYE 239 Query: 276 TQNHF 280 Sbjct: 240 IVRQR 244 >gi|170723830|ref|YP_001751518.1| RNA methyltransferase [Pseudomonas putida W619] gi|169761833|gb|ACA75149.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida W619] Length = 248 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 8/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ Q+ ++ R+ L V+ + + E Sbjct: 7 IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRIQALLALAAENRVQVGQAERRELDAWVEG 66 Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ E +P L+ L++VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGATAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + K S + + V+ K A GA E IP + ++NL L+K+ G +G + ++++ + Q Sbjct: 127 VVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEIYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 187 QDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMSGSVSSLNVSVATGVCLFEAVRQR 244 >gi|74316627|ref|YP_314367.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259] gi|74056122|gb|AAZ96562.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259] Length = 254 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 73/245 (29%), Positives = 120/245 (48%), Gaps = 8/245 (3%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQT 100 +P +YG H V A L + + ++ ++A AR + V Sbjct: 3 EKPAERLIYGFHAVLARLRHDPAGVLEIYLDLTRRDARARDLVHQARDSGVKLAQVEADR 62 Query: 101 IDKIVGKEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + ++VGK A HQG+ L L+++ LL++LD V DPHN+GAILRSA Sbjct: 63 LGRLVGKAAKHQGVVARVKPVALTHSLDEVLESIEGPPLLVILDGVTDPHNLGAILRSAD 122 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF +I K + +A + K ASGA + +PY+ ++NL ++++ I D Sbjct: 123 AFGAHAVIAPKDNAVGINATVEKVASGAADTVPYLMVTNLARTIEELKEHDIWVIAADMD 182 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++PL +A +LGAEG G+R ++ +A + + G +++LNVS +AA+ LY Sbjct: 183 GEQPLSGIDVRSGVAWVLGAEGAGIRRLVKQRCDQVARIPIGGTVESLNVSVSAALCLYE 242 Query: 276 TQNHF 280 T Sbjct: 243 TARQR 247 >gi|226309787|ref|YP_002769681.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Brevibacillus brevis NBRC 100599] gi|226092735|dbj|BAH41177.1| probable 23S rRNA (guanosine-2'-O-)-methyltransferase [Brevibacillus brevis NBRC 100599] Length = 251 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 119/244 (48%), Gaps = 12/244 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104 ++ G + V AL + R I ++ + L + V T + +D++ Sbjct: 3 EEWILGKNPVIEALRSG-RTINKIWVAEGTNKNLMGPVFALAKEQGVIVTTANRKKLDQL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V + HQG+ A +D + + +++LD + DPHN+G+I+R+A A Sbjct: 62 VSTD-NHQGVVASVAAYDYVEVDDILKRAEEKNEAPFILLLDELEDPHNLGSIMRTADAV 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR S S +A +AK+++GA+ ++P R++NL ++++ G G + +K Sbjct: 121 GAHGVIIPKRRSVSLTATVAKASAGAINYVPVARVTNLVRTMEELKERGVWIAGTDASAK 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + Q +A+++G+EGKG+ +E + L M G + +LN S AAA+ +Y Sbjct: 181 QDFRQGDYTMPLAIVIGSEGKGMSRLVRENCDFLYSLPMAGNVTSLNASVAAALLMYEVY 240 Query: 278 NHFA 281 + Sbjct: 241 RSRS 244 >gi|15600129|ref|NP_253623.1| rRNA methylase [Pseudomonas aeruginosa PAO1] gi|218894031|ref|YP_002442900.1| putative rRNA methylase [Pseudomonas aeruginosa LESB58] gi|254244173|ref|ZP_04937495.1| hypothetical protein PA2G_05016 [Pseudomonas aeruginosa 2192] gi|296391776|ref|ZP_06881251.1| putative rRNA methylase [Pseudomonas aeruginosa PAb1] gi|313109938|ref|ZP_07795866.1| putative rRNA methylase [Pseudomonas aeruginosa 39016] gi|52783327|sp|Q9HUM8|RLMB_PSEAE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|9951215|gb|AAG08321.1|AE004906_9 probable rRNA methylase [Pseudomonas aeruginosa PAO1] gi|126197551|gb|EAZ61614.1| hypothetical protein PA2G_05016 [Pseudomonas aeruginosa 2192] gi|218774259|emb|CAW30076.1| probable rRNA methylase [Pseudomonas aeruginosa LESB58] gi|310882368|gb|EFQ40962.1| putative rRNA methylase [Pseudomonas aeruginosa 39016] Length = 248 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 115/241 (47%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ QL + ++ + PV + +D+ Sbjct: 7 VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64 Query: 108 EAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +L L+ LL+ LD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGENMLEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A + K A GA E IP + ++NL L+K+ G +G + ++ K L Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q L++GAEGKG+R T+E +A L M G + +LNVS A V L+ Sbjct: 185 YQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244 Query: 281 A 281 Sbjct: 245 T 245 >gi|308171987|ref|YP_003918692.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|307604851|emb|CBI41222.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|328551797|gb|AEB22289.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens TA208] gi|328910058|gb|AEB61654.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens LL3] Length = 249 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 121/246 (49%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102 ++ ++ G + V L + RK+++L +N + + ++ VP + +D Sbjct: 3 QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQFVPRKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V E HQG+ + A LD ++LD + DPHN+G+I+R+A Sbjct: 62 QMV--EGQHQGVVAQVAAYEYAQLDELYKRAEERNEQPFFLILDELEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ KR + +A +AK+++GA+EHIP ++++NL L +M G +G + Sbjct: 120 AVGAHGIVIPKRRAVGLTATVAKASTGAIEHIPVVKVTNLARTLDEMKERGIWVVGTDAS 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +++ +AL++G+EG+G+ +E + L M G + +LN S AA + +Y Sbjct: 180 AREDYRSMDGKMPLALVIGSEGRGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239 Query: 276 TQNHFA 281 Sbjct: 240 VYRKRN 245 >gi|306832717|ref|ZP_07465854.1| RNA methyltransferase [Streptococcus bovis ATCC 700338] gi|304425173|gb|EFM28302.1| RNA methyltransferase [Streptococcus bovis ATCC 700338] Length = 249 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 123/247 (49%), Gaps = 10/247 (4%) Query: 41 RHTS-QPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 ++ N +YGVH V+ +L N K++ + + + +P Sbjct: 2 KNREFNETNDIVYGVHAVTESLTANTGNKLYIQDDLRGKNVDKIKNLAAEKKVSISWMPK 61 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILR 152 +T++ + AVHQG L + LD + L+++LD +NDPHN G+ILR Sbjct: 62 KTLNDMT-NGAVHQGFVLRVSEFAYAELDMILDKAAQEENPLILILDGLNDPHNFGSILR 120 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A + G+I K + + V+AK+++GA+EH+P R++NL+ L K+ GF G Sbjct: 121 TADATNVTGVIIPKHRAVGVTPVVAKTSTGAIEHVPIARVTNLSQTLDKLKEQGFWVFGT 180 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV Sbjct: 181 DMNGTPSHKWNT-SGKLALIIGNEGKGISQNIKKQVDEMITIPMNGHVQSLNASVAAAVL 239 Query: 273 LYITQNH 279 +Y H Sbjct: 240 MYEVFRH 246 >gi|297618403|ref|YP_003703562.1| RNA methyltransferase, TrmH family, group 3 [Syntrophothermus lipocalidus DSM 12680] gi|297146240|gb|ADI02997.1| RNA methyltransferase, TrmH family, group 3 [Syntrophothermus lipocalidus DSM 12680] Length = 250 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 106/239 (44%), Gaps = 10/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107 + G++ VS AL R+I ++ + R PV++V + + Sbjct: 5 IEGINWVSEALKAG-RQIHRIYVDDSRKDRRVESILAHAHKRGIPVESVGKNQLRSMSAS 63 Query: 108 EAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + +AL + P D + L++LD V DP N+GAI+R+A G Sbjct: 64 GSPQGVVALASPYHYWPIEDILEFTQSRGEQPFLILLDGVEDPQNLGAIIRTAECAGVHG 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 I+ +S + + ++++GA+EH+ ++NL A++++ G +G + + Sbjct: 124 IVLPLHHSVKVTPAVGRASAGAVEHMKIALVTNLVRAIEELKQGGLWIVGADAMANHTYF 183 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL+ G EG+G+R +E + + M G + +LNVS A A+ + Sbjct: 184 EVSLAAPLALVFGGEGRGIRRLVREHCDILVSIPMFGQLNSLNVSTACALVTFEVLRQR 242 >gi|254422310|ref|ZP_05036028.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] gi|196189799|gb|EDX84763.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] Length = 269 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 94/259 (36%), Gaps = 7/259 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW-- 83 ++ K+++ F Q + + L L G H + AA + L T+ R Sbjct: 6 QNQTVKQLRKFQQ-PKERRKQSVLLLEGTHLIEAACEVRY-PLQTLCYTEAWQVRHKRLC 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHV 141 + + V+ V P+ + I +A+ + L ++L+ + Sbjct: 64 EEAIAQSHQVELVSPEVLKSIASTITPDGAIAIAPRRNVWKAESGRPKDMVSLGVILETL 123 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R++ DG+ + AS + ++ + Sbjct: 124 QDPGNLGTIIRTSAGVGSDGLWLSHDSVD-LGHPKVLRASVGQWFRMPMATVDVVEQAST 182 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G Q + ++ ++ Q ++G EG GL A+ + + ++ Sbjct: 183 LRQNGVQVVATTAAAELDYWQLDLQRPTVFLMGNEGAGLSDALMACASVTVKIPVAPEVE 242 Query: 262 ALNVSNAAAVALYITQNHF 280 +LNV+ + A+ LY + Sbjct: 243 SLNVAISTALLLYEAKRQR 261 >gi|121728986|ref|ZP_01681989.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52] gi|147673348|ref|YP_001218092.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae O395] gi|153214903|ref|ZP_01949701.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587] gi|153803651|ref|ZP_01958237.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3] gi|229513521|ref|ZP_04402985.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae TMA 21] gi|229521664|ref|ZP_04411082.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae TM 11079-80] gi|229524579|ref|ZP_04413984.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae bv. albensis VL426] gi|229527472|ref|ZP_04416864.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae 12129(1)] gi|262170151|ref|ZP_06037840.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae RC27] gi|121628709|gb|EAX61177.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52] gi|124115062|gb|EAY33882.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587] gi|124120810|gb|EAY39553.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3] gi|146315231|gb|ABQ19770.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395] gi|227014487|gb|ACP10697.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395] gi|229335104|gb|EEO00589.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae 12129(1)] gi|229338160|gb|EEO03177.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae bv. albensis VL426] gi|229341258|gb|EEO06262.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae TM 11079-80] gi|229349398|gb|EEO14354.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae TMA 21] gi|262021559|gb|EEY40271.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae RC27] gi|327485080|gb|AEA79487.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio cholerae LMA3894-4] Length = 247 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTVPPQTIDKI 104 N +YG+H V+A L + + K RL N ++ + + +D Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL P + A LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A V L+ Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|271962521|ref|YP_003336717.1| rRNA methylase-like protein [Streptosporangium roseum DSM 43021] gi|270505696|gb|ACZ83974.1| rRNA methylase-like protein [Streptosporangium roseum DSM 43021] Length = 322 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 68/280 (24%), Positives = 116/280 (41%), Gaps = 12/280 (4%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQ 70 + ++ R R + S+ ++ G + V AL S Sbjct: 44 HKDKARTERIEREDRTGRPSSPRTPVRGRRSEDAPEYIGGRNPVLEALRAGVPASTLYIA 103 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-- 128 L + + H + V + +D++ + A+HQG+AL+ P + Sbjct: 104 LRIDNDDRVKESVRIAADHGIAMLEVGKEKLDRLT-EGAIHQGMALQIPPYEYAHPEDLI 162 Query: 129 -----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 L++ LD V DP N+GAI RSA AF G++ R S + K+++G Sbjct: 163 GIAQDAAEVPLIVALDSVTDPRNLGAIARSATAFGAHGMVIPSRRSAGVTGGAWKTSAGT 222 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRP 242 L H+ R +NLT L++ G IGL +S + + + +++G+EGKGL Sbjct: 223 LAHLTVARAANLTATLREYREAGLFVIGLDGESTVDIGDANLLDGPLVVVVGSEGKGLSR 282 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +E+ + + M ++LN AA VALY H + Sbjct: 283 LVRESCDLVVRIPMNAAAESLNAGVAAGVALYEVARHRRR 322 >gi|68249454|ref|YP_248566.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 86-028NP] gi|68057653|gb|AAX87906.1| probable tRNA/rRNA methyltransferase [Haemophilus influenzae 86-028NP] Length = 246 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 116/240 (48%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L ++P R I + + RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKRREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL+ + +G + ++ + + Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIARQR 243 >gi|237710747|ref|ZP_04541228.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA] gi|265750421|ref|ZP_06086484.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_33FAA] gi|229455469|gb|EEO61190.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA] gi|263237317|gb|EEZ22767.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_33FAA] Length = 249 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 13/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGK 107 ++GV V A+ R+I ++L K+ + L + PV+ VP + I++I Sbjct: 2 IFGVRAVIEAIQAG-REIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERINRIT-- 58 Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ + + L + L ++LD + D N GAI R+ D Sbjct: 59 RKNHQGVVAFISSVTYQKTENLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGAD 118 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II + S S +A K+++GAL +P R +LT+ ++ + GF+ + + Sbjct: 119 AIIIPSKNSVSVNADAMKTSAGALHTLPVCREQSLTNTIKYLKDCGFKIVAATEKGDYDY 178 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + D + +I+GAE G+ + + + G I++LNVS AA + +Y Sbjct: 179 TKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQR 238 >gi|228999340|ref|ZP_04158919.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17] gi|229006894|ref|ZP_04164525.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4] gi|228754347|gb|EEM03761.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4] gi|228760285|gb|EEM09252.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17] Length = 257 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 98/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 4 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 44 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L I +L+ + DW + VP + + E A+ Sbjct: 45 LKAG--VITELIVSDQTDLPKDWTV---TDVEMYIVPEAIVKVLRETETTQGVFAVCEKH 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + + ++ + +S Sbjct: 100 EKEIALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + ++ P + ALI+G EG G+ Sbjct: 156 QGSIFHLPIVKGNLEEWVDKLKEKNVPVYGTS-LENGIPYGEVTPTGSFALIVGNEGNGV 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 215 RLEILTKCNQNLYIPIYGGAESLNVAVAAGILTYYLQ 251 >gi|107104035|ref|ZP_01367953.1| hypothetical protein PaerPA_01005108 [Pseudomonas aeruginosa PACS2] gi|254238349|ref|ZP_04931672.1| hypothetical protein PACG_04484 [Pseudomonas aeruginosa C3719] gi|126170280|gb|EAZ55791.1| hypothetical protein PACG_04484 [Pseudomonas aeruginosa C3719] Length = 248 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 115/241 (47%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ QL + ++ + PV + +D+ Sbjct: 7 VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64 Query: 108 EAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +L L+ LL+ LD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGENMLEELLERGEGVPLLLALDGVTDPHNLGACLRTADAAGVQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A + K A GA E IP + ++NL L+K+ G +G + ++ K L Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q L++GAEGKG+R T+E +A L M G + +LNVS A V L+ Sbjct: 185 YQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244 Query: 281 A 281 Sbjct: 245 T 245 >gi|302552340|ref|ZP_07304682.1| tRNA/rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302469958|gb|EFL33051.1| tRNA/rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 311 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 57/277 (20%), Positives = 108/277 (38%), Gaps = 13/277 (4%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQLLA 73 ++ +++ K ++ ++ ++ + + G ++V AL S Q Sbjct: 36 EARKGHVKQRAAQAKSRRAQSRTKGPRAKGTSELVVGRNSVVEALREGVPASTLYVQQFI 95 Query: 74 TKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---- 128 + R + P +D++ HQGL L+ P + Sbjct: 96 DSDERVREALQLAAERGGINLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDLAAA 154 Query: 129 ---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + L++ LD V DP N+GA++RS AF G++ +R + +A K+++GA Sbjct: 155 AADEGDDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGAAA 214 Query: 186 HIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 P R +N + + + + E +A+++G+EGKGL Sbjct: 215 RTPVARATNLTRALEAYKKAGIVVVGLAADGEAELGDLEALGGPVAIVVGSEGKGLSRLV 274 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + MPG ++LN AA + LY + Sbjct: 275 GETCDYRVRIPMPGGTESLNAGVAAGIVLYEAARRRS 311 >gi|229825690|ref|ZP_04451759.1| hypothetical protein GCWU000182_01053 [Abiotrophia defectiva ATCC 49176] gi|229790253|gb|EEP26367.1| hypothetical protein GCWU000182_01053 [Abiotrophia defectiva ATCC 49176] Length = 259 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 103/246 (41%), Gaps = 11/246 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQT 100 ++ E+L +YG + V A + I +L + + V Sbjct: 12 NEEESLVIYGRNAVLEAFRSGKT-IDRLYVQEGVADGTLQSILRTAKKTDAVINFVNKDR 70 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSA 154 ++K + +A+ A + D ++VLD + DPHN+GAI+R+A Sbjct: 71 LNKYAEGDKHQGVVAMAAAYNYAEVEDILNAAKEKEEPPFIIVLDDIEDPHNLGAIIRTA 130 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 G+I KR++ +A +A++++GA+ + P +++N++ ++++ G Sbjct: 131 NQAGAHGVIIPKRHAVGLTATVARTSAGAINYTPVAKVTNISRTIEELKEKGIWFACADM 190 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + I L++G+EG G+ +E + + M G I +LN S AA V Y Sbjct: 191 SGELMYNCN-LTGAIGLVIGSEGSGVSRLVKEKCDFVVKIPMFGQIDSLNASVAAGVLSY 249 Query: 275 ITQNHF 280 Sbjct: 250 EIVRQR 255 >gi|323443096|gb|EGB00716.1| tRNA/rRNA methyltransferase [Staphylococcus aureus O46] Length = 248 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E+ + G H V A+ +P KI K V+TVP +D + Sbjct: 2 EDTVVVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 62 A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S + + +AK+++GA+EH+P IR++NL + ++ GF G +++ Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239 Query: 278 NHF 280 Sbjct: 240 RKR 242 >gi|313676227|ref|YP_004054223.1| RNA methyltransferase, trmh family, group 3 [Marivirga tractuosa DSM 4126] gi|312942925|gb|ADR22115.1| RNA methyltransferase, TrmH family, group 3 [Marivirga tractuosa DSM 4126] Length = 258 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 60/251 (23%), Positives = 110/251 (43%), Gaps = 11/251 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRK--IFQLLATKNALARLDWDANLPHPFPVKTVP 97 ++ + +++G V A++ I+ +N L D P VP Sbjct: 5 NKRPKLNDKDYIFGTRAVIEAIHAGKEMDNIYIDKEVRNDLVSELMDLCKEQKVPFTKVP 64 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAI 150 + +++I HQG+ + + +LD L+++LD V D N GAI Sbjct: 65 IEKLNRIT--MKNHQGVIAMVSAVSYASLDNVINEAYAKGKDPLILILDRVTDVRNFGAI 122 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 RSA D I+ + S ++ K+++GAL +IP R ++L + ++ + G Q + Sbjct: 123 ARSAECAGVDAIVIPFKGSAQINSDAVKTSAGALHYIPVCRENSLKNTVEYLQKSGLQVV 182 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + K + +A+ILG+E G+ TA +A + M G I +LNVS + A Sbjct: 183 ACTEKGKDLIYNTPMAQPLAIILGSEEDGISNDLIRTADFLAKIPMTGKIASLNVSVSCA 242 Query: 271 VALYITQNHFA 281 +A++ + Sbjct: 243 IAVFEAVRQRS 253 >gi|218899716|ref|YP_002448127.1| RNA methyltransferase, TrmH family [Bacillus cereus G9842] gi|228903079|ref|ZP_04067216.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 4222] gi|218543852|gb|ACK96246.1| RNA methyltransferase, TrmH family [Bacillus cereus G9842] gi|228856565|gb|EEN01088.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 4222] Length = 265 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 100/264 (37%), Gaps = 13/264 (4%) Query: 16 KDSHYAKL--RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 ++ H K + K+ + K + + F+ G H V AL + +L+ Sbjct: 7 RELHIMKNIDSVQNPRVKQWKKLQTK-KERDKKGLFFVEGFHLVEEALKAG--IVTELIV 63 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 + DW N + VP + + E A+ L + Sbjct: 64 SDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKHEKEVALTDGK--- 117 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++LD + DP N+G I+R+A A ++ + ++ + +S G++ +P ++ + Sbjct: 118 -FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPIVKGN 176 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + ++ P + ALI+G EG G+R + + Sbjct: 177 LEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGVRQEILTKTDQNLY 235 Query: 254 LHMPGIIKALNVSNAAAVALYITQ 277 + + G ++LNV+ AA + Y Q Sbjct: 236 IPIYGGAESLNVAVAAGILTYYLQ 259 >gi|212638387|ref|YP_002314907.1| SpoU family rRNA methylase [Anoxybacillus flavithermus WK1] gi|212559867|gb|ACJ32922.1| SpoU family rRNA methylase [Anoxybacillus flavithermus WK1] Length = 254 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 100/277 (36%), Gaps = 30/277 (10%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 I K+E++ K + + + G H V AL Sbjct: 7 KRIESPKNERVKQWKRLLTK-------------------KEREKTGLFLVEGFHLVEEAL 47 Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 + + L+ ++ W + P+ V I ++ E QG+ L Sbjct: 48 KSN--IVELLIVSETKTIPTSWKVD---HIPMVIVTEAVIGELSDTE-TPQGIVAVCRHL 101 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 D + +D V DP N+G I+R+A A D ++ + +A + ++ Sbjct: 102 QWNVADVQTA----LFIDAVQDPGNVGTIIRTADAAGIDAVVVGEGSVDIYNAKVIRATQ 157 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G+L H + ++ + + G S + + ALI+G EG G+ Sbjct: 158 GSLFH-FPVIKGDIGQWIAHFQNRHIPIYGTSLQNGVDYRSVSPSSSFALIVGNEGSGVN 216 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K + T+ ++ + G ++LNV+ A + LY Q Sbjct: 217 DKWLQQTTANLYVPIYGQAESLNVAVATGILLYHLQK 253 >gi|114566620|ref|YP_753774.1| 23S rRNA methyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337555|gb|ABI68403.1| 23S rRNA methyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 264 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 94/257 (36%), Gaps = 4/257 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ K QKS Q + G + AL +P + Q+ + Sbjct: 6 SKDNKKIKYAARLKQKS-FRKQEACFLIEGKKMLEEALKHPK-LLRQIFIEAELASEYTE 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + V + + I E G+ + + + L+ LD + D Sbjct: 64 LYQQHPEWECYVVDKRLMKHISDTETPP-GIVALCQIPSWSREEFLSQNAFLLYLDRIAD 122 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+RS A DGI+ + S + +++ G + + + D L+++ Sbjct: 123 PGNLGTIIRSGWALGVDGILLSPESVDPFSPKVVRASMGGIF-NIPLLLDFSVDELKRLK 181 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + S +++ + L +G+E +G+RP +E + + + +L Sbjct: 182 QNAYTFFCASLQARQEIFSLDFTGPSLLAIGSESQGVRPVIEEICDFNCKIPIKPGVDSL 241 Query: 264 NVSNAAAVALYITQNHF 280 N + A A+ + Sbjct: 242 NAAVACAIIINEAWKQR 258 >gi|15965091|ref|NP_385444.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium meliloti 1021] gi|307315061|ref|ZP_07594646.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti BL225C] gi|15074271|emb|CAC45917.1| Putative tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021] gi|306898900|gb|EFN29550.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti BL225C] Length = 291 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 140/268 (52%), Positives = 186/268 (69%), Gaps = 13/268 (4%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQS--FNQKSRHTSQ-----------PENLFLYGVHTVSA 59 S +D+HYA LRR HRD ++ + + ++ P+ + LYG+HTV A Sbjct: 9 KSARDTHYANLRRAHRDARRERGEIPTPRQDKRAKLSADWKPPALAPDQVLLYGLHTVRA 68 Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 AL+NP R+I +L T+NA ARLD PFP +TV PQ +D+I+G +A+HQG+ LET Sbjct: 69 ALDNPERRIIRLSVTQNAAARLDLGDLTALPFPTETVMPQELDRILGPDAIHQGVMLETQ 128 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PL L+A+R+ L++VLD V DPHN+GAI+RSAVAF +ITT R+SP+ES VLAKS Sbjct: 129 PLPHRKLEALRDCPLILVLDQVTDPHNVGAIMRSAVAFDAGALITTMRHSPTESGVLAKS 188 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ASGALE IPYI+I+NL D L+++H GF TIGL S+ +PLE DKIAL+LG+EGKG Sbjct: 189 ASGALELIPYIQITNLADTLEELHELGFMTIGLDSEGPQPLEGTFAGDKIALVLGSEGKG 248 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSN 267 LR KT++T ++A L MPG IK+LNVSN Sbjct: 249 LRQKTRQTVKALARLDMPGAIKSLNVSN 276 >gi|254506517|ref|ZP_05118659.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus 16] gi|219550691|gb|EED27674.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus 16] Length = 245 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLECEPERFIEAFVLKGRQDDRLMPILNELQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQG+ P + A S LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-RGANHQGIMARVKPAKQLNENDLDDILAKHESPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + +A ++K A GA E +P +R++NL ++ + G +G + ++ + Sbjct: 122 VAAVIVPKDKSANITATVSKVACGAAETVPLVRVTNLARTMRALQEQGIWFVGTAGEATQ 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ V L+ Sbjct: 182 DIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|283795459|ref|ZP_06344612.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. M62/1] gi|291077120|gb|EFE14484.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. M62/1] gi|295091144|emb|CBK77251.1| rRNA methylase, putative, group 3 [Clostridium cf. saccharolyticum K10] Length = 247 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + ++F L ++ + + V + +D++ Sbjct: 8 IEGRNAVLEAFRSGKTIDRLFVLDGCQDGPVKSITREARKQDTIINYVSKERLDQLSETG 67 Query: 109 AVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 LA A + D +R L +LD + DPHN+GAI+R+A G+ Sbjct: 68 KHQGVLAYAAAYKYAQVEDMLRAAEEKGEPPFLFLLDGIEDPHNLGAIIRTANLAGAHGV 127 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I KR + +A +AK+++GAL + P +++NL+ ++++ G + + + + Sbjct: 128 IIPKRRAAGLTATVAKTSAGALNYTPVAKVTNLSATIEELKERGLWFVCA-DMGGESMYR 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 187 LNLKGPIGLVIGNEGEGVSRLVKEKCDMVASIPMKGDIDSLNASVAAGVLAYEIVRQR 244 >gi|307322674|ref|ZP_07602003.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti AK83] gi|306891673|gb|EFN22530.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti AK83] Length = 291 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 140/268 (52%), Positives = 188/268 (70%), Gaps = 13/268 (4%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQ------SFNQKSRHTS-------QPENLFLYGVHTVSA 59 S +D+HYA LRR HRD ++ + +++ + + P+ + LYG+HTV A Sbjct: 9 KSARDTHYANLRRAHRDARRERGEIPTPRQDKRGKPPADWKPPALAPDQVLLYGLHTVRA 68 Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 AL+NP R+I +L T+NA ARLD PFP +TV PQ +D+I+G +A+HQG+ LET Sbjct: 69 ALDNPERRIIRLSVTQNAAARLDLGDLTALPFPTETVMPQELDRILGPDAIHQGVMLETQ 128 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PL L+A+R+ L++VLD V DPHN+GAI+RSAVAF +ITT R+SP+ES VLAKS Sbjct: 129 PLPHRKLEALRDCPLILVLDQVTDPHNVGAIMRSAVAFDAGALITTMRHSPTESGVLAKS 188 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ASGALE IPYI+I+NL D L+++H GF TIGL S+ +PLE DKIAL+LG+EGKG Sbjct: 189 ASGALELIPYIQITNLADTLEELHELGFMTIGLDSEGPQPLEGTFAGDKIALVLGSEGKG 248 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSN 267 LR KT++T ++A L MPG IK+LNVSN Sbjct: 249 LRQKTRQTVKALARLDMPGAIKSLNVSN 276 >gi|310816761|ref|YP_003964725.1| RNA methyltransferase, TrmH family, putative [Ketogulonicigenium vulgare Y25] gi|308755496|gb|ADO43425.1| RNA methyltransferase, TrmH family, putative [Ketogulonicigenium vulgare Y25] Length = 262 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 97/258 (37%), Positives = 144/258 (55%), Gaps = 13/258 (5%) Query: 31 KKMQSFNQKSRHTS--QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 KK + +K + E ++L+G+H V AL NP R +L+ T+NA +L DA Sbjct: 2 KKPKWVIEKEQARRVSAQETVWLFGLHAVRDALLNPERTRLRLVVTQNAADKLA-DAIAA 60 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHV 141 V+ P+ + E+VHQG ALE PL +L L++LD V Sbjct: 61 SGMEVELSDPRKFAAPIDPESVHQGAALEVKPLDWGSLADVALSLKDNGQPPRLVLLDRV 120 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DPHN+GAILRS+ F ++ +R+S E+ LAK+ASGALE PYIR+ NL DA+ + Sbjct: 121 TDPHNVGAILRSSEVFGALAVVGVQRHSAPETGALAKTASGALERQPYIRVRNLGDAMDE 180 Query: 202 MHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + + G+ +GL + ++ +EQ ++ +A+++GAEG GLR KT+E + + G Sbjct: 181 LRAMGYLLLGLDGEGEQTIEQAIEGRRDRPVAIVMGAEGPGLREKTRELCDHLVRIPAAG 240 Query: 259 IIKALNVSNAAAVALYIT 276 +LNVSNAAAVALY Sbjct: 241 GFASLNVSNAAAVALYAV 258 >gi|258452736|ref|ZP_05700734.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A5948] gi|257859609|gb|EEV82459.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A5948] Length = 248 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E+ + G H V A+ +P KI K V+TVP +D + Sbjct: 2 EDTVIVGKHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 62 A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPHNLGSILRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S + + +AK+++GA+EH+P IR++NL + ++ GF G +++ Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239 Query: 278 NHF 280 Sbjct: 240 RKR 242 >gi|170733360|ref|YP_001765307.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia MC0-3] gi|169816602|gb|ACA91185.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia MC0-3] Length = 260 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 103/257 (40%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ YK++++ + H + L G H SA L+ + + T+ AL + Sbjct: 6 SRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGATPELCV-TTEGALGHAEA 64 Query: 84 DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A + + V P + + G L P + V ++ +++ D V Sbjct: 65 QAIVARIDMQRIVTLPDALFGQLSNVVNGVGFLLLVDRPTHPLPERVTHTSVVL--DGVQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA A + + + S+ + +S GA + +++ Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEAEALAERL 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 T + + + + +A + G EG G+ ++ AT + PG +++ Sbjct: 183 DVPVALTDSHGAQAVYDCD---LSGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ AAAV L+ Sbjct: 240 LNVAAAAAVCLFEQVRQ 256 >gi|198274689|ref|ZP_03207221.1| hypothetical protein BACPLE_00845 [Bacteroides plebeius DSM 17135] gi|198272136|gb|EDY96405.1| hypothetical protein BACPLE_00845 [Bacteroides plebeius DSM 17135] Length = 249 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 60/244 (24%), Positives = 106/244 (43%), Gaps = 11/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 +N ++GV V A+ L+ ++ L++ + PV+ VP + I++ Sbjct: 3 EKNEMIFGVRAVIEAIQAGKEIDKVLIKKDIQSDLSKELFAVLKDTFIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I + HQG+ +P+ L + LL++LD + D N GAI R+ Sbjct: 63 IT--KKNHQGVVAFISPITYQRTEDIVPFLFEQGKNPLLILLDGLTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II + S S +A K+++GAL IP R +NLT+ ++ + GF+ + + Sbjct: 121 AGVDAIIIPSKNSVSVNADAIKTSAGALHTIPVCRENNLTNTIKFLKDSGFKIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +I+GAE G+ + + G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYQGPTCIIMGAEDTGVPYDHLALCDEWIKIPLFGNIESLNVSVAAGILIYEA 240 Query: 277 QNHF 280 Sbjct: 241 VKQR 244 >gi|305665147|ref|YP_003861434.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170] gi|88709899|gb|EAR02131.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170] Length = 255 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 113/239 (47%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG+ V A+N+ K+F K L R VP + ++++ + Sbjct: 17 IYGIRAVIEAINSNETIDKVFVQKGLKGDLFRELEGLLRKKGIAAAYVPIEKLNRLS--K 74 Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ +P+ T+++ N+ L ++LD ++D N GAI+R+A DG Sbjct: 75 NNHQGVIANISPIAFYTIESLVEKVLASNNTPLFLLLDQLSDVRNFGAIIRTAECTGVDG 134 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II K+ + +A K+++GA +P ++ ++ DA+ + + G + + + Sbjct: 135 IIIPKKGAAPVTADTIKTSAGAAFKVPIAKVDHIKDAVFYLQASGISVTVATEKTNNTIY 194 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A+++G+E +G+ P + A +A L + G I++LNVS A AV LY Sbjct: 195 DVPFKEPCAIVMGSEDRGVSPSVIKAADQLAKLPLLGEIESLNVSVACAVFLYEVVRQR 253 >gi|298492725|ref|YP_003722902.1| tRNA/rRNA methyltransferase SpoU ['Nostoc azollae' 0708] gi|298234643|gb|ADI65779.1| tRNA/rRNA methyltransferase (SpoU) ['Nostoc azollae' 0708] Length = 270 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 44/262 (16%), Positives = 96/262 (36%), Gaps = 12/262 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDW 83 + K+++ + ++ + + L G H + A + L + A +L Sbjct: 6 QNSLVKQIRKLH-STKERHKQQLFLLEGTHLLEEACAANYPLEVVCCTLQWQQAHPQLWS 64 Query: 84 DANLPHPF------PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137 + + V + + I Q + S V + L++ Sbjct: 65 EVCSRCDASGGGSHRAEVVSEEILAAIA---TTVQPDGVVATAKRSQQQTQVPLTGLVLG 121 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 ++ + DP N+G ++R+A A G+ + ++ + ++++G + +L Sbjct: 122 VETLQDPGNLGTMIRAAAAAGASGLWLSDDSVDLDNPKVLRASAGQWFRLDKAVSPDLKA 181 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 +Q+ G Q I + + ++LG EG GL A + + + Sbjct: 182 TVQQCQQAGMQVIATLPTASLTYWEVDWRKPSLILLGNEGAGLSDDLAAMADTQVKIPLN 241 Query: 258 GIIKALNVSNAAAVALYITQNH 279 + +LNV+ AAA+ LY Q Sbjct: 242 PGVDSLNVAIAAALMLYEAQRQ 263 >gi|154684614|ref|YP_001419775.1| YacO [Bacillus amyloliquefaciens FZB42] gi|154350465|gb|ABS72544.1| YacO [Bacillus amyloliquefaciens FZB42] Length = 249 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 121/246 (49%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102 ++ ++ G + V L + RK+++L +N + + ++ VP + +D Sbjct: 3 QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVMELAKKRGVTIQFVPRKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V E HQG+ + A LD ++LD + DPHN+G+I+R+A Sbjct: 62 QMV--EGQHQGVVAQVAAYEYAQLDELYKRAEERNEQPFFLILDELEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ KR + ++ +AK+++GA+EHIP ++++NL L +M G +G + Sbjct: 120 AVGAHGIMIPKRRAVGLTSTVAKASTGAIEHIPVVKVTNLARTLDEMKERGIWVVGTDAS 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +++ +AL++G+EG+G+ +E + L M G + +LN S AA + +Y Sbjct: 180 AREDYRSMDGKMPLALVIGSEGRGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239 Query: 276 TQNHFA 281 Sbjct: 240 VYRKRN 245 >gi|226941122|ref|YP_002796196.1| tRNA methyltransferase [Laribacter hongkongensis HLHK9] gi|226716049|gb|ACO75187.1| Probable tRNA methyltransferase [Laribacter hongkongensis HLHK9] Length = 257 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 56/284 (19%), Positives = 106/284 (37%), Gaps = 30/284 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M ++ +++ + S + + + L L G+H V A Sbjct: 1 MKYLTSAQNDTLKS------------------LVRLASRPAERRKSGLLVLEGLHLVDAW 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L R + QL ++ALA + A L PV VP + K + + Sbjct: 43 LARQPR-LDQLFVREDALAHPEVTALLARLSADTPVAVVPAALLGKASELASPAE----- 96 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 L + A + +++LD V DP N+G +LR+A A + + + S Sbjct: 97 VIALAPIPVPAPYHGGSVLLLDDVQDPGNLGTLLRTAAAADVRRVYLSAGCADVWSGKAL 156 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 ++ GA + + + ++ + + + PL +A + G EG Sbjct: 157 RAGMGA---QFALDLHERAVLPAVLQAFSGRKVVTHLEGSVPLWSLDLTGDVAFVFGNEG 213 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G+ + A + MPG+ ++LNV+ AAA+ L+ + Sbjct: 214 AGVSAAVLDCAPDRVIIPMPGVAESLNVAAAAAICLFERVRQRS 257 >gi|90408972|ref|ZP_01217104.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas sp. CNPT3] gi|90309920|gb|EAS38073.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas sp. CNPT3] Length = 246 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 66/245 (26%), Positives = 111/245 (45%), Gaps = 9/245 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTID 102 ++ +YG+H V A L +I ++ K + D V+ + +++D Sbjct: 2 SKSEIIYGMHAVDALLEREPERIIEIYTLKGRDDQRITDITEKAKHWGISVQEMLRKSLD 61 Query: 103 KIVGKEAVHQGLALE------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + E LA L L+ + + L++LD V DPHN+GA LRSA A Sbjct: 62 EKAQCEQHQGVLARIKIAKVLNDNDLESLLENLTEAPFLLILDGVTDPHNLGACLRSADA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S S + V+ K A GA E + I+++NL ++ + G G + ++ Sbjct: 122 AGVHAVIIPKDNSASLTPVVRKVACGAAESVALIQVTNLARCMRSLQDKGIWIYGTAGEA 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + IA+ +GAE KGLR T+E ++ L M G + +LNVS A + L+ Sbjct: 182 TGSVYDCQFSGGIAIAMGAEDKGLRRLTREHCDALIKLPMAGSVSSLNVSVATGICLFEV 241 Query: 277 QNHFA 281 + Sbjct: 242 VRQRS 246 >gi|227543952|ref|ZP_03974001.1| RNA methyltransferase [Lactobacillus reuteri CF48-3A] gi|300909702|ref|ZP_07127163.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112] gi|227186068|gb|EEI66139.1| RNA methyltransferase [Lactobacillus reuteri CF48-3A] gi|300893567|gb|EFK86926.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112] Length = 258 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 93/280 (33%), Gaps = 23/280 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M ++ ++ + K + Q L G H V A Sbjct: 1 MEQLTSIHNQHVKDWKKLQTK-------------------KARRQTGTYLLDGWHLVQEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +++ T LA + + V + + I QG+A A Sbjct: 42 SKAGIE-LLEVVGTTEQLAAHPELEGMANAT--YEVTEEIMKHITD-TVTPQGIAAVVAL 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 S L A + LD V DP N+G ++R+A A G++ +R + + +S Sbjct: 98 PDSHRLPAGPLHGAWLFLDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRSM 157 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+ + K D ALI+G EG+G+ Sbjct: 158 QGSQFHLQMFEGDLRKWIDDFKSINAPTYGTQLNPQAKNFRTVDPGDTFALIMGNEGQGM 217 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T ++ M G ++LNV+ +A + ++ + Sbjct: 218 SDDLLSQTTDNLYIPMRGEAESLNVAISAGILMFQLNQNL 257 >gi|167756030|ref|ZP_02428157.1| hypothetical protein CLORAM_01550 [Clostridium ramosum DSM 1402] gi|167704022|gb|EDS18601.1| hypothetical protein CLORAM_01550 [Clostridium ramosum DSM 1402] Length = 241 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 111/238 (46%), Gaps = 8/238 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG +T+ AL + ++ + NA + P K V K +G + Sbjct: 4 YIYGKNTILEALK-GDKSVYTVYVQNNAKDNGIIEQCKRKKIPFKIVDKSEFIKKLGNVS 62 Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ E ++D LL++LD + DPHN+GAILR+ A DG+I Sbjct: 63 -HQGVMAEIEEYRYYSIDEIINTIPDGKQPLLLMLDGLEDPHNLGAILRTCDAIGVDGVI 121 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K S + +AK ++GA++H+ +++NLT L+ + F +G D + Q Sbjct: 122 IGKNRSVGLNGTVAKVSTGAIDHVKVAQVTNLTRTLEDLKKRSFWVVGCDLDKSQDYRQV 181 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 N + +++G+EG G+ +++ L M G I +LN S A AV LY N Sbjct: 182 DYNMPLVIVIGSEGFGISRLVKKSCDINVVLPMVGHINSLNASVATAVILYQVYNSRN 239 >gi|194466627|ref|ZP_03072614.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23] gi|194453663|gb|EDX42560.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23] Length = 258 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 94/280 (33%), Gaps = 23/280 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M ++ ++ + K + Q L G H V A Sbjct: 1 MEQLTSIHNQHVKDWKKLQTK-------------------KARRQTGTYLLDGWHLVQEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +++ T LA + + V + + I QG+A A Sbjct: 42 SKAGIE-LLEVVGTTEQLAAHPELEGMANAT--YEVTEEIMKHITD-TVTPQGIAAVVAL 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 S L A + LD V DP N+G ++R+A A G++ +R + + +S Sbjct: 98 PDSHRLPAGPLHGAWLFLDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRSM 157 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+ + + K D ALI+G EG+G+ Sbjct: 158 QGSQFHLQMFEGDLRKWIDDFKSTNAPVYGTQLNPQAKNFRTVDPGDTFALIMGNEGQGM 217 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T ++ M G ++LNV+ +A + ++ + Sbjct: 218 SDDLLSQTTDNLYIPMRGEAESLNVAISAGILMFQLNQNL 257 >gi|309973649|gb|ADO96850.1| 23S rRNA mG2251 methyltransferase [Haemophilus influenzae R2846] Length = 245 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 117/240 (48%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL+ L+ + +G + ++ + + Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRNLQQNHNIWVVGTAGEATETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|157690879|ref|YP_001485341.1| tRNA/rRNA methyltransferase [Bacillus pumilus SAFR-032] gi|194017547|ref|ZP_03056158.1| RNA methyltransferase, TrmH family, group 3 [Bacillus pumilus ATCC 7061] gi|157679637|gb|ABV60781.1| tRNA/rRNA methyltransferase [Bacillus pumilus SAFR-032] gi|194010819|gb|EDW20390.1| RNA methyltransferase, TrmH family, group 3 [Bacillus pumilus ATCC 7061] Length = 249 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 121/245 (49%), Gaps = 13/245 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102 ++ ++ G + V L + R++++L +N + + ++ VP + +D Sbjct: 3 QQHDYVIGKNAVIETLKSD-RELYKLWMAENTVKGQAQQVIELAKKQNITIQYVPRKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V HQG+ + A LD ++LD + DPHN+G+I+R+A Sbjct: 62 QMV--TGQHQGIVAQVAAYEYAELDDLYQIAEQRNEQPFFLILDEIEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ KR + + +AK+++GA+EHIP +++NL+ AL +M G G + Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVAKVTNLSRALDEMKERGIWVAGTDAS 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +K+ Q +AL++G+EGKG+ +E + L M G + +LN S AA++ +Y Sbjct: 180 AKQDYRQFDGTMPLALVIGSEGKGIGRLIKEKCDFLIKLPMAGKVTSLNASVAASLLMYE 239 Query: 276 TQNHF 280 Sbjct: 240 VYRKR 244 >gi|297581438|ref|ZP_06943361.1| RNA methyltransferase [Vibrio cholerae RC385] gi|297534276|gb|EFH73114.1| RNA methyltransferase [Vibrio cholerae RC385] Length = 247 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTVPPQTIDKI 104 N +YG+H V+A L + + K RL N ++ + + +D Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL P + A LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-EGANHQGLIARVKPARQLNENDLDDILAQYEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A V L+ Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|90420557|ref|ZP_01228464.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1] gi|90335285|gb|EAS49038.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1] Length = 291 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 89/257 (34%), Gaps = 6/257 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K +++ QK RH + G+ V AL+ I L+ + A + Sbjct: 32 SNPIVKDIRALAQK-RHRDETGLFLAEGLKLVGDALDAGWE-IQTLVIARAAAGHEFLEK 89 Query: 86 NLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 V + ++ I ++ + + L V +++ LD V Sbjct: 90 TAARTVSLGGDVLEANAKVLEAITRRDNPQNAVGVFRRRLTPLAKLDVSGRNVIVALDRV 149 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G +LR+A A G++ S ++ G++ +P + S + Sbjct: 150 RDPGNLGTVLRTADAAGATGVVLIGETVDPFSLETVRATMGSIFAVPLAKASEAEFLEWR 209 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G + E L++G E GL P + + G Sbjct: 210 KGFSGLVAGTHMEGAVDYREPRYGAQPTILLMGNEQAGLTPSLARICDVLVRIPQSGRAD 269 Query: 262 ALNVSNAAAVALYITQN 278 +LN++ A V L+ + Sbjct: 270 SLNLAVATGVMLFEARR 286 >gi|148544445|ref|YP_001271815.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM 20016] gi|184153809|ref|YP_001842150.1| rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227363127|ref|ZP_03847262.1| RNA methyltransferase [Lactobacillus reuteri MM2-3] gi|325682767|ref|ZP_08162283.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A] gi|148531479|gb|ABQ83478.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM 20016] gi|183225153|dbj|BAG25670.1| rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227071845|gb|EEI10133.1| RNA methyltransferase [Lactobacillus reuteri MM2-3] gi|324977117|gb|EGC14068.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A] Length = 258 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 93/280 (33%), Gaps = 23/280 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M ++ ++ + K + Q L G H V A Sbjct: 1 MEQLTSIHNQHVKDWKKLQTK-------------------KARRQTGTYLLDGWHLVQEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +++ T LA + + V + + I QG+A A Sbjct: 42 SKAGIE-LLEVVGTAEQLAAHPELEGMANAT--YEVTEEIMKHITD-TVTPQGIAAVVAL 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 S L A + LD V DP N+G ++R+A A G++ +R + + +S Sbjct: 98 PDSHRLPAGPLHGAWLFLDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRSM 157 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+ + K D ALI+G EG+G+ Sbjct: 158 QGSQFHLQMFEGDLRKWIDDFKSINAPVYGTQLNPQAKNFRTVDPGDTFALIMGNEGQGM 217 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T ++ M G ++LNV+ +A + ++ + Sbjct: 218 SDDLLSQTTDNLYIPMRGEAESLNVAISAGILMFQLNQNL 257 >gi|145220210|ref|YP_001130919.1| RNA methyltransferase [Prosthecochloris vibrioformis DSM 265] gi|145206374|gb|ABP37417.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium phaeovibrioides DSM 265] Length = 249 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 60/238 (25%), Positives = 108/238 (45%), Gaps = 7/238 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + V L I ++ N + + ++K+ Sbjct: 10 IVYGRNAVLELLREKPGSIEKIYFQFNTTHPKLKEILITARRQKLITGKARLEKLSLIAG 69 Query: 110 V--HQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ + + T++ + LL+VL ++DPHNIGAI+R+A A + DG+ Sbjct: 70 TTKHQGVCALISTVTYYTIEELLSVPRNTAPLLVVLQGLDDPHNIGAIIRTAEAVAADGV 129 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + + +AV+ K+++GAL H+ ++ +L +L+ +H+ G + I +++ Sbjct: 130 VLVEGKGAPVNAVVHKASAGALSHMRVAKVKSLVRSLEFLHANGIRVIATDMEAETNYTD 189 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A++LGAEG GL P+ E + M G +++LNVS A V LY Sbjct: 190 ADFRLPTAIVLGAEGSGLAPEAMEYCDETLRIPMAGCVESLNVSVTAGVVLYEVMRQR 247 >gi|237734015|ref|ZP_04564496.1| 23S rRNA methyltransferase [Mollicutes bacterium D7] gi|229382841|gb|EEO32932.1| 23S rRNA methyltransferase [Coprobacillus sp. D7] Length = 244 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 111/238 (46%), Gaps = 8/238 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG +T+ AL + ++ + NA + P K V K +G + Sbjct: 7 YIYGKNTILEALK-GDKSVYTVYVQNNAKDNGIIEQCKRKKIPFKIVDKSEFIKKLGNVS 65 Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ E ++D LL++LD + DPHN+GAILR+ A DG+I Sbjct: 66 -HQGVMAEIEEYRYYSIDEIINTIPDGKQPLLLMLDGLEDPHNLGAILRTCDAIGVDGVI 124 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K S + +AK ++GA++H+ +++NLT L+ + F +G D + Q Sbjct: 125 IGKNRSVGLNGTVAKVSTGAIDHVKVAQVTNLTRTLEDLKKRSFWVVGCDLDKSQDYRQV 184 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 N + +++G+EG G+ +++ L M G + +LN S A AV LY N Sbjct: 185 DYNMPLVIVIGSEGFGISRLVKKSCDINVVLPMVGHVNSLNASVATAVILYQVYNSRN 242 >gi|172060952|ref|YP_001808604.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MC40-6] gi|171993469|gb|ACB64388.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MC40-6] Length = 260 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 104/257 (40%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ YK++++ + H + L G H +A L+ + + AT+ ALA + Sbjct: 6 SRDNPLYKRLKALAGSTSHQRRGGQALLEGFHLAAAYLDTGATPELCV-ATEGALAHAEA 64 Query: 84 DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A + + V P + + G L + P + V ++ +++ D V Sbjct: 65 QAIIARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPVQPLPERVTHTSVVL--DGVQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA A + + + S+ + +S GA + ++ Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDALAARL 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 T + + + +A + G EG G+ ++ AT + PG +++ Sbjct: 183 DVPVALTDSHGAQAVFDCD---LAGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ AAAV L+ Sbjct: 240 LNVAAAAAVCLFEQVRQ 256 >gi|110597055|ref|ZP_01385344.1| RNA methyltransferase TrmH, group 3 [Chlorobium ferrooxidans DSM 13031] gi|110341246|gb|EAT59711.1| RNA methyltransferase TrmH, group 3 [Chlorobium ferrooxidans DSM 13031] Length = 248 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 62/244 (25%), Positives = 110/244 (45%), Gaps = 9/244 (3%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHPFPVKTVPPQTIDK 103 + +YG + V L I ++ N A +L + ++K Sbjct: 4 EHSENIVYGRNAVLELLQQKPESIEKIYFQFNTAHPKLKEIIIGARRQKI-VTGKARLEK 62 Query: 104 IVGKEAV--HQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ + + +LD +S LL+VL ++DPHNIGAI+R+A A Sbjct: 63 LSLIAGTTKHQGVCALISTVTYYSLDEVLASPRNSSPLLVVLQGLDDPHNIGAIIRTAEA 122 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + D ++ + +AV+ K+++GAL H+ ++ +L AL+ +H Q I D+ Sbjct: 123 VAADAVVLVEGKGSPVNAVVHKASAGALSHMRICKVKSLVRALEYLHEKDIQVIAADMDA 182 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + A++LG EG G+ P+ + + + M G +++LNVS A V LY + Sbjct: 183 ELNYNDADMKRATAIVLGMEGSGIAPEALKFCDHVVRIPMAGCVESLNVSVTAGVLLYES 242 Query: 277 QNHF 280 Sbjct: 243 MRQR 246 >gi|319775208|ref|YP_004137696.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3047] gi|317449799|emb|CBY86007.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3047] Length = 246 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 114/240 (47%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGSVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL+ + +G + + + + Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEVAETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|261377823|ref|ZP_05982396.1| RNA methyltransferase, TrmH family [Neisseria cinerea ATCC 14685] gi|269146125|gb|EEZ72543.1| RNA methyltransferase, TrmH family [Neisseria cinerea ATCC 14685] Length = 261 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 53/282 (18%), Positives = 95/282 (33%), Gaps = 24/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E+I + +Q + + Q L GVH + Sbjct: 1 MKQISSPNNEQI------------------RHLQRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L + + + + + + + +V + KI + + Sbjct: 43 LQSGRKPVGVYIPEAKMPSEEVRKLTAVLPEDRIFSVSDGILKKISS-LSCADDILALID 101 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L TL + +VLD V DP N+G +LRSA A ++ + + S + ++ Sbjct: 102 IPLGRTLPDKGDC---VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRA 158 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 GA + I + + L + + L E A + G EG G Sbjct: 159 GMGAHF-LLDIYSQADLEIWLAHYEDRVFATALREEKQAVLYGEDLCGPTAWVFGNEGAG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + E A + M ++LNV+ AA + L+ A Sbjct: 218 VGKAVLERADKCVRIPMNDATESLNVAMAATICLFEQMRQRA 259 >gi|145637023|ref|ZP_01792687.1| hypothetical protein CGSHiHH_04955 [Haemophilus influenzae PittHH] gi|145269881|gb|EDK09820.1| hypothetical protein CGSHiHH_04955 [Haemophilus influenzae PittHH] Length = 245 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL+ + +G + ++ + + Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|16272800|ref|NP_439020.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae Rd KW20] gi|145632229|ref|ZP_01787964.1| hypothetical protein CGSHi3655_07239 [Haemophilus influenzae 3655] gi|145634717|ref|ZP_01790425.1| hypothetical protein CGSHiAA_03913 [Haemophilus influenzae PittAA] gi|148826495|ref|YP_001291248.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae PittEE] gi|229844738|ref|ZP_04464877.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 6P18H1] gi|229845912|ref|ZP_04466024.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 7P49H1] gi|260579951|ref|ZP_05847781.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae RdAW] gi|319897646|ref|YP_004135843.1| 23S rRNA (gm2251)-methyltransferase [Haemophilus influenzae F3031] gi|329122866|ref|ZP_08251438.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus aegyptius ATCC 11116] gi|1176354|sp|P44906|RLMB_HAEIN RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|1573875|gb|AAC22519.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|144987136|gb|EDJ93666.1| hypothetical protein CGSHi3655_07239 [Haemophilus influenzae 3655] gi|145267883|gb|EDK07879.1| hypothetical protein CGSHiAA_03913 [Haemophilus influenzae PittAA] gi|148716655|gb|ABQ98865.1| hypothetical protein CGSHiEE_07740 [Haemophilus influenzae PittEE] gi|229810916|gb|EEP46633.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 7P49H1] gi|229812452|gb|EEP48142.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 6P18H1] gi|260093235|gb|EEW77168.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae RdAW] gi|317433152|emb|CBY81526.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3031] gi|327472130|gb|EGF17568.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus aegyptius ATCC 11116] Length = 246 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL+ + +G + ++ + + Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|296392882|ref|YP_003657766.1| RNA methyltransferase, TrmH family, group 3 [Segniliparus rotundus DSM 44985] gi|296180029|gb|ADG96935.1| RNA methyltransferase, TrmH family, group 3 [Segniliparus rotundus DSM 44985] Length = 296 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 11/242 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPH--PFPVKTVPPQTIDKIV 105 ++ G + V L + L+A+ +A R+ + PV V +D+ Sbjct: 52 EWVLGRNPVLECLRAKVPAVELLVASGIDADERVAESVRIAGNVGVPVTEVARFELDRRS 111 Query: 106 GKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A HQG+ L P + L + LDH++DP N+GA++RSA AF Sbjct: 112 S-GAPHQGIGLRVRPYEYHHPEDLLTEAENSGRPALFVALDHISDPRNLGAVVRSAAAFG 170 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++ R S S +A+ ++++GA +P + NL +L++ G +GL ++ Sbjct: 171 GHGVLIPNRRSASLTAIAWRTSAGAAARLPVAQAPNLARSLKQWQERGLLLVGLDAEGDT 230 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+ + +AL++G+EGKGL +E+ + + M G +++LNVS A V L Sbjct: 231 SLDDFTGTEPLALVVGSEGKGLSRLVRESCDFVVSIPMSGQVESLNVSVATGVVLGEIAR 290 Query: 279 HF 280 Sbjct: 291 QR 292 >gi|15606918|ref|NP_214299.1| rRNA methylase [Aquifex aeolicus VF5] gi|2984156|gb|AAC07690.1| rRNA methylase [Aquifex aeolicus VF5] Length = 240 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 100/239 (41%), Gaps = 5/239 (2%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + ++G + + AL +A + + + V+ + + ++++ Sbjct: 2 EKKFVIWGRNPIIEALRAGRNLEKIYVAHDSHPPKELLELAKKRGVKVQRISRKKVEELA 61 Query: 106 GKEAVHQGLA--LETAPLLSPTL--DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 G + +A + L + + +V+DH+ DP N+G +LR+ G Sbjct: 62 GTKKTQGVVALLSPVNYVSPHELFKECIEKKSFFIVIDHITDPQNVGNLLRTCEVLGGVG 121 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 + +K + + + K++SGA+ H+ ++S+L K + K + Sbjct: 122 ALISKDRTSPINETVVKASSGAVFHLKISKVSSL-SRELKNFQKMGGWVFAVEKGGKDIR 180 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL+LG+E KG+ + + + + M G + +LNV +A A+A++ T Sbjct: 181 EVDIPLPVALVLGSEDKGVSKSVLDISDQIVTIPMKGKVTSLNVGSAGAIAMWETAKKI 239 >gi|320547737|ref|ZP_08042021.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus equinus ATCC 9812] gi|320447497|gb|EFW88256.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus equinus ATCC 9812] Length = 276 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%) Query: 45 QPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 N +YGVH V+ +L N K++ + D + P +T++ Sbjct: 34 NEANDIVYGVHAVTESLTANTGNKLYIQDDLRGKNVDKIKDLAAEKKVSISWTPKKTLND 93 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + AVHQG L + LD + L+++LD +NDPHN G+ILR+A A Sbjct: 94 MT-NGAVHQGFVLRVSEFAYAELDTILDKAAQEENPLILILDGLNDPHNFGSILRTADAT 152 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + G+I K + + V++K+++GA+EH+P R++NL+ L K+ GF G + Sbjct: 153 NVTGVIIPKHRAVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDKLKEQGFWVFGTDMNGT 212 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + K+ALI+G EGKG+ P ++ M + M G +++LN S AAAV +Y Sbjct: 213 SSHKWNT-SGKLALIIGNEGKGISPNIKKQVDEMITIPMNGHVQSLNASVAAAVLMYEVF 271 Query: 278 NH 279 H Sbjct: 272 RH 273 >gi|289579164|ref|YP_003477791.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter italicus Ab9] gi|289528877|gb|ADD03229.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter italicus Ab9] Length = 249 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 9/244 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103 E ++G + V A+ + I ++ +K A + NL V T +T+ K Sbjct: 4 KEQDAIFGRNPVMEAIKSGKE-IEKIYVSKTAKGNISKIINLAKEAGIVVSTTDNETLSK 62 Query: 104 IVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + G + +AL D + L++LD + DPHN+GAI+RSA AF Sbjct: 63 LAGSQNHQGIVALSAVYQYFEVEDLLEYAEQKKEKPFLLILDEITDPHNLGAIIRSAEAF 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A + K+++GA+E++ ++SN+ + ++ + G IG + Sbjct: 123 GVHGIIIPKRRAVGVNATVVKTSAGAVEYMKIAKVSNINNTIRNLKERGLWIIGTDVNGG 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K E+ + +AL++G EGKG+ + + + M G I +LN S AA++ +Y Sbjct: 183 KSFEEIDYDFPVALVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQVV 242 Query: 278 NHFA 281 + Sbjct: 243 SKRK 246 >gi|119487909|ref|ZP_01621406.1| tRNA/rRNA methyltransferase [Lyngbya sp. PCC 8106] gi|119455485|gb|EAW36623.1| tRNA/rRNA methyltransferase [Lyngbya sp. PCC 8106] Length = 295 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 68/292 (23%), Positives = 130/292 (44%), Gaps = 19/292 (6%) Query: 6 KKKSEKIF-SLKDSHYAKLRRNHRDYKKMQSFNQ-----KSRHTSQPENLFLYGVHTVSA 59 K S++ + + + R+ + S + + + +YG HTV A Sbjct: 2 SKDSQRPQPNSQGQRHRPKRKINPVRSHSPQIPSPQSGFDSPNQEETDTDLIYGRHTVLA 61 Query: 60 ALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115 AL N R + ++ + + + + V Q +D+I HQG+ Sbjct: 62 ALEN-ERSLNRIWMVPQLQSDNRFQKGLSTAKANGTLIDRVSNQRLDQIA-PGTNHQGIV 119 Query: 116 LETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 + +P L + ++++ + + DPHN+GAI+R++ A G+I +R Sbjct: 120 AQVSPYAYKELSELIDLAKAASSEPVIVMAEGLTDPHNLGAIIRTSEAIGVSGLILPQRR 179 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + ++ + K A+GALE P R+ NL AL+++ GF G S+ + +PL + Sbjct: 180 AVGITSTVMKVAAGALETFPVARVVNLNRALEELKQAGFWIYGTSATADQPLYTVKFSGP 239 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L++G+EG+GL +++ + + + G +LNVS A +ALY Sbjct: 240 VVLVVGSEGQGLTRLIEQSCDILVSIPLVGQTPSLNVSVATGMALYEIYRQR 291 >gi|241895044|ref|ZP_04782340.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313] gi|241871762|gb|EER75513.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 259 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 23/277 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ ++ + + + E L G H V A Sbjct: 4 METIKSAKNSRVKAWQKLQTK-------------------KGRQASETYLLDGWHLVQEA 44 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + K+ ++ T LA + L PV + K+ QG+ E + Sbjct: 45 IQHDG-KLHAVMGTAEQLAEHQEELPL--GVPVFEITDDIAKKLSD-LVTPQGIFAEVSL 100 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + LD + DP N+G ++R+A A G++ S ++ Sbjct: 101 PSATREPQFIHDGAWLFLDAIQDPGNVGTMVRTADAAGFTGVVFGHGSVDPYSPKALRAM 160 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+ + + + + ALI+G EG+G+ Sbjct: 161 QGSQFHLTTTTGNLADWTASFTQNGMNVYGTQLDPEAADVFTVPAQTQFALIMGNEGQGM 220 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +P+ + T ++ + G ++LNV+ AA +A++ + Sbjct: 221 QPELAKMTTQNLYIPISGQAESLNVAVAAGIAMFALK 257 >gi|219559656|ref|ZP_03538732.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T17] gi|289571821|ref|ZP_06452048.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289545575|gb|EFD49223.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] Length = 316 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 69/271 (25%), Positives = 118/271 (43%), Gaps = 11/271 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79 A LR +H K+ ++ ++ + L G + V L + A Sbjct: 41 AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTEADE 99 Query: 80 RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131 RL + + +D++ +HQG+AL+ P D + Sbjct: 100 RLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQP 158 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP R Sbjct: 159 PALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 218 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +NLT L+ G + IGL + L+ D + +++G+EGKGL ++ + Sbjct: 219 ATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEV 278 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M ++LN S AA V L + Sbjct: 279 VSIPMAAQAESLNASVAAGVVLAEIARQRRR 309 >gi|262275145|ref|ZP_06052956.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Grimontia hollisae CIP 101886] gi|262221708|gb|EEY73022.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Grimontia hollisae CIP 101886] Length = 245 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 107/241 (44%), Gaps = 8/241 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPH-PFPVKTVPPQTIDKI 104 N +YG+H V A L++ + ++ K L L ++ + + +D Sbjct: 3 NEMIYGIHAVKAVLDSDPSRFIEVFVLKGRQDERVLPVLNELSRLGVTLQEMSRKALDDK 62 Query: 105 VGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + +A D + + LL+VLD V DPHN+GA LR+A A Sbjct: 63 AKGASHQGLIARVKPGRQYNENDLDAILDGKENPLLLVLDGVTDPHNLGACLRNADAAGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S +A K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 123 CAVIVPKDKSAQLNATARKVAVGAAEVVPLVRVTNLARTMRALQERGIWFVGTAGEATHD 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +A+++GAEG G+R T+ET + + M G + +LNVS A + L+ Sbjct: 183 VYDAKLTGPLAIVMGAEGDGMRRLTRETCDDLISIPMAGSVSSLNVSVATGICLFEAVRQ 242 Query: 280 F 280 Sbjct: 243 R 243 >gi|209548917|ref|YP_002280834.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534673|gb|ACI54608.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 296 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 141/267 (52%), Positives = 184/267 (68%), Gaps = 14/267 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQ----SFNQKSRHTSQPE---------NLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + + + R + + LYG+HTV AA Sbjct: 16 SAKDTHYATLRRAHRDAKRERGEIPTPQPQKRRRGAEDWKPPALAPDQVHLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP RK +L T+NALARL+ D P + V PQ IDK++G EA+HQG+ LET P Sbjct: 76 LDNPERKKIKLFVTQNALARLEVDVETL-GIPFEIVSPQEIDKVLGPEAIHQGVMLETRP 134 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKSA Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALE IPYI+++NL DAL ++H GF TIGL S+ LE +K+AL+LG+EGKGL Sbjct: 195 SGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAALEGTFSGEKVALVLGSEGKGL 254 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267 R KT+ET ++A L MPG IK+LNVSN Sbjct: 255 RQKTRETVNALARLDMPGAIKSLNVSN 281 >gi|261417588|ref|YP_003251270.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y412MC61] gi|297528463|ref|YP_003669738.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. C56-T3] gi|319765246|ref|YP_004130747.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y412MC52] gi|261374045|gb|ACX76788.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y412MC61] gi|297251715|gb|ADI25161.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. C56-T3] gi|317110112|gb|ADU92604.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y412MC52] Length = 246 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 13/243 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 ++ G + V AL R I ++ + A + V+ VP + +D++ Sbjct: 2 MDYIIGKNPVIEALKAG-RDINKIWIAEGAQRHTVEPVLEWAKRRGVLVQYVPKRKLDQM 60 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 E HQG+ + A +D + ++LD + DPHN+GAI+R+A A Sbjct: 61 A--EGAHQGVIAQAAAYRYYEIDDLFARAAERGEAPFFLILDELEDPHNLGAIMRTADAV 118 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR S + +AK+++GA+EH+P R++NL + ++ G G + ++ Sbjct: 119 GAHGLIIPKRRSVGLTQTVAKASTGAIEHVPVARVTNLARTIDELKERGVWVAGTDASAQ 178 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 179 DDYRSLDGTMPLALVIGSEGKGISRLVLEKCDFLFRLPMRGHVTSLNASVAASLLMYEVY 238 Query: 278 NHF 280 Sbjct: 239 RKR 241 >gi|56418622|ref|YP_145940.1| tRNA/rRNA methyltransferase [Geobacillus kaustophilus HTA426] gi|56378464|dbj|BAD74372.1| tRNA/rRNA methyltransferase [Geobacillus kaustophilus HTA426] Length = 245 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 13/243 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104 ++ G + V AL R I ++ + A + V+ VP + +D++ Sbjct: 1 MDYIIGKNPVIEALKAG-RDINKIWIAEGAQRHTVEPVLEWAKRRGVLVQYVPKRKLDQM 59 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 E HQG+ + A +D + ++LD + DPHN+GAI+R+A A Sbjct: 60 A--EGAHQGVIAQAAAYRYYEIDDLFARAAERGEAPFFLILDELEDPHNLGAIMRTADAV 117 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR S + +AK+++GA+EH+P R++NL + ++ G G + ++ Sbjct: 118 GAHGLIIPKRRSVGLTQTVAKASTGAIEHVPVARVTNLARTIDELKERGVWVAGTDASAQ 177 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 178 DDYRSLDGTMPLALVIGSEGKGISRLVLEKCDFLFRLPMRGHVTSLNASVAASLLMYEVY 237 Query: 278 NHF 280 Sbjct: 238 RKR 240 >gi|227538387|ref|ZP_03968436.1| possible tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum ATCC 33300] gi|227241769|gb|EEI91784.1| possible tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum ATCC 33300] Length = 259 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 62/258 (24%), Positives = 111/258 (43%), Gaps = 13/258 (5%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPH 89 MQ+F + R+ + N ++G+ V A+++ I L + +L H Sbjct: 1 MQNFQRHDRNEKRESNQMVFGIRAVIEAIDSGKE-IESLFVQRGLGGSLFLELKALIKEH 59 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVN 142 + VP + +++I HQG+ +P+ ++ + L+++LD V Sbjct: 60 EIGFQQVPIEKLNRIT--RKNHQGVIAVISPITYQKIEDLIPEIYEKGETPLILMLDGVT 117 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+GAI R+A II K+ S + K+++GAL IP R NL + + Sbjct: 118 DVRNLGAIARTAECSGVHAIIVPKKGSAEINPDAIKTSAGALYKIPVCRHDNLGKVGKFL 177 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G Q + + +++ + +I+GAE G+ + +A + M G I + Sbjct: 178 IDSGIQLVVSTEKTEESIYSVDYTAPTCIIMGAEDVGVSDDLIRISDHLAKIPMFGEIGS 237 Query: 263 LNVSNAAAVALYITQNHF 280 LNVS +A V LY Sbjct: 238 LNVSVSAGVVLYEAIRQR 255 >gi|319403499|emb|CBI77078.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella rochalimae ATCC BAA-1498] Length = 280 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 53/272 (19%), Positives = 103/272 (37%), Gaps = 13/272 (4%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 K+ + ++ K ++ ++K ++ ++ G+ V ALN I Sbjct: 8 KVKEITSL-------SNPIIKYFKALDKK-KNRNRENIFMAEGLKLVIDALNLGWT-IHT 58 Query: 71 LLATKNALARLDWDANLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 L+ +KN+L+ + + V + ++ I ++ + + S Sbjct: 59 LIVSKNSLSNSTIENTAANTIANGGFVIKASQKVLESITHRDNPQTVIGIFKQQWHSIEK 118 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + + + LD V DP N+G I+R+ A GII + S ++ G++ Sbjct: 119 IIRQIGDVYIALDRVRDPGNLGTIIRTVDAAGAKGIILIGETTDPFSPETVRATMGSIFS 178 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +P R + T H G S + KN I L++G E +GL Sbjct: 179 VPLYRCNESTFLNWSTHFKGIIVGTHLKGSVDYRTIDFKNGPIILLMGNEQQGLSDVLVN 238 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +A + G +LN++ A A+ LY + Sbjct: 239 HCHKLARIPQCGHADSLNLAVATAIMLYEIRR 270 >gi|328884017|emb|CCA57256.1| rRNA methylases [Streptomyces venezuelae ATCC 10712] Length = 319 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 14/277 (5%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQLL 72 + H A R ++ ++ +R + ++ + G + V AL + S Q Sbjct: 42 RKGHKA-YRVSNAMARQAAKRKPVARRGGKGQSEMVVGRNPVFEALRDGVPASTLYVQQF 100 Query: 73 ATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--- 128 + R + + P +D++ HQGL L+ P + Sbjct: 101 IDNDERVREALNLATGRGNIHIMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDLVT 159 Query: 129 ----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + L++ LD V DP N+GA++RS AF G++ +R + +A K+++G Sbjct: 160 AAFDDHDDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTA 219 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPK 243 P R +NLT L++ G +GL++D + + + E + +++G+EGKGL Sbjct: 220 ARTPVARATNLTRCLEQYQKAGVTVVGLAADGDREVHELEELGGPVVIVVGSEGKGLSRL 279 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ET + + MPG ++LN AA V LY Sbjct: 280 VGETCDFLVRIPMPGGAESLNAGVAAGVVLYEAARRR 316 >gi|254413736|ref|ZP_05027505.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus chthonoplastes PCC 7420] gi|196179333|gb|EDX74328.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus chthonoplastes PCC 7420] Length = 328 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 74/290 (25%), Positives = 129/290 (44%), Gaps = 18/290 (6%) Query: 8 KSEKIFSLK-DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN------LFLYGVHTVSAA 60 + ++ S K + + K+ ++ E+ LYG H V AA Sbjct: 21 RDQRRPSSKGKFSRDQRSPDKPVLKRRYDPQPSPPEPTESESTLSEDVDLLYGRHPVLAA 80 Query: 61 LNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L N + + + + + + V + + ++ + A HQG+A + Sbjct: 81 LENQRQLNRVWILPQLRYDHRFHSLLLQAKANGTVIDEVDSRRLSQVT-QGANHQGVAAQ 139 Query: 118 TAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 AP L + +++V D + DPHN+GAI+R+A A G++ +R + Sbjct: 140 VAPYSYKELGDLIKAAKSTSQYPVIVVCDGITDPHNLGAIIRTAEALGAQGLVIPQRRAV 199 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 ++ + K A+GALE +P R+ NL+ AL+++ + GF G +D+ K L N I Sbjct: 200 GVTSTVMKVAAGALETLPIARVVNLSRALEELKTAGFWIYGTCADAGKLLHTVDLNGSIV 259 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L++G+EG GL TQ + + + G +LN S AAA+ LY T Sbjct: 260 LVIGSEGSGLSLLTQRCCDVLVSIPLYGKTPSLNASVAAAMTLYETYRQR 309 >gi|157963403|ref|YP_001503437.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella pealeana ATCC 700345] gi|157848403|gb|ABV88902.1| RNA methyltransferase, TrmH family, group 3 [Shewanella pealeana ATCC 700345] Length = 246 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 65/238 (27%), Positives = 111/238 (46%), Gaps = 10/238 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 +G+H V A L N ++ ++ + RL + V+ + +D Sbjct: 8 FGLHAVEAVLKNSPERVIEMWVLQGRDDARLTPILAMAAEWGVSVQYASRKALDDKSD-G 66 Query: 109 AVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ + P + + + L++LD V DPHN+GA LR+A A G+ Sbjct: 67 GQHQGIVAKVKPAKILSDNELSAMLEKTEVPFLLILDGVTDPHNLGACLRNADAAGVHGV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + V++K A GA E +P +++NL ++ + G IG + ++ L Q Sbjct: 127 IVPKDNSVGLTPVVSKVACGAAEVVPLYQVTNLARTMRSLQEKGIWIIGAAGEADCELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A+ +GAEGKGLR ++E+ ++ + M G + +LNVS A V L+ Sbjct: 187 ASLTGPLAIAMGAEGKGLRRLSRESCDTLVSIPMAGSVSSLNVSVATGVCLFEAVRQR 244 >gi|224368949|ref|YP_002603113.1| RNA methyltransferase (TrmH family protein, group 3) [Desulfobacterium autotrophicum HRM2] gi|223691666|gb|ACN14949.1| RNA methyltransferase (TrmH family protein, group 3) [Desulfobacterium autotrophicum HRM2] Length = 253 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 11/248 (4%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDA--NLPHPFPVKTVPPQ 99 L G+H + AL RK + +L +K+ ARL PV+ Sbjct: 3 RKSEAVEILCGIHPIREALRAGRRKFYAILVSKDRSRARLAEILGVAQEQSIPVEITDTM 62 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILR 152 T+D + A HQG+A +P + + + ++V++ + DP N GA++R Sbjct: 63 TLDALTD-NARHQGVAARVSPFATVRAEGIVKQMPKGVSNRFILVIETLEDPQNFGALIR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A+ D I+ K S S S ++++++GA+EH I+N L+++ + GF GL Sbjct: 122 TALCAGVDHIMIPKERSASPSPSVSRASAGAMEHAEISLITNTAGLLRQLKAMGFWVAGL 181 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 PL + L++G E KG+RP ++ + L + + +LN S A +A Sbjct: 182 DGQGTTPLFSADLTGNLVLVVGGEHKGIRPLVKKECDFLVSLPIKAGVTSLNASVAGGIA 241 Query: 273 LYITQNHF 280 +Y Sbjct: 242 MYEALRQR 249 >gi|163791188|ref|ZP_02185605.1| tRNA/rRNA methyltransferase [Carnobacterium sp. AT7] gi|159873519|gb|EDP67606.1| tRNA/rRNA methyltransferase [Carnobacterium sp. AT7] Length = 288 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 67/288 (23%), Positives = 126/288 (43%), Gaps = 16/288 (5%) Query: 8 KSEKIFSLKDSHYAK---LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K F ++ K ++ R +K + + + + + G L + Sbjct: 3 RDNKNFDKRNRQPKKPNFSKKTDRTERKFVKPIEDTVEEQETDRDLVAGRLPAIEVLKS- 61 Query: 65 SRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 R I ++ + + + + VP +D++V HQG+ + + Sbjct: 62 ERDINKIFLQEGLSGSKMEEIQNLAKKRSVQISFVPKSKLDQLVDGM-NHQGVVVAASAF 120 Query: 122 LSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T+D ++LD V DPHN+G+I+R+A A GII KR + +A Sbjct: 121 QYATIDDLFAVAAQKNEDPFFILLDGVEDPHNLGSIMRTADAIGAHGIIIPKRRAVGLTA 180 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 +AK+++GA+EH+ R++NL A++++ G G + + + E I L++G Sbjct: 181 TVAKASTGAIEHVAVARVTNLVQAIKELKERGLWLYGTDMEGQDYRQWET-TLPIGLVMG 239 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 EGKG+ +E M + M G +++LN S AA++ +Y K Sbjct: 240 NEGKGISRLVKEQMDGMITIPMTGHVQSLNASVAASLLMYEVYRGRNK 287 >gi|311069356|ref|YP_003974279.1| putative RNA methylase [Bacillus atrophaeus 1942] gi|310869873|gb|ADP33348.1| putative RNA methylase [Bacillus atrophaeus 1942] Length = 248 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 99/277 (35%), Gaps = 30/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K++K+ K H + ++ + G H V A Sbjct: 1 MKRIDSAKNQKVKDWKKLHTK-------------------KERTKTNTFLIEGEHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L L+ + + +L + + E Q A+ Sbjct: 42 LKTEGAVKEILVKDEGKIPP-----DLDMSIHCYILSEDAFSAVTETETPQQIAAVCR-- 94 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D++ + + L+++D V DP N+G ++R+A A D ++ + + +SA Sbjct: 95 ---MPEDSLTSYKRLLLIDAVQDPGNLGTMIRTADAAGMDAVVIGDGTVDAYNGKTLRSA 151 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP ++ + + S + E ALI+G EG G+ Sbjct: 152 QGSHFHIPIVKRNLHVFIEELKASGVKVYGTSLQNGSAFQETA-PIGSFALIVGNEGAGV 210 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 E ++ + G ++LNV+ AAAV LY + Sbjct: 211 DSAILEKTDLNLYVPLYGQAESLNVAIAAAVLLYHLR 247 >gi|220931406|ref|YP_002508314.1| tRNA/rRNA methyltransferase (SpoU) [Halothermothrix orenii H 168] gi|219992716|gb|ACL69319.1| tRNA/rRNA methyltransferase (SpoU) [Halothermothrix orenii H 168] Length = 270 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 99/256 (38%), Gaps = 4/256 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLD 82 +++++K ++ KS + L G + A +IF + Sbjct: 7 SSDNKNFKYLKKLYNKS-FRKKEGKFILEGYRLIMEACGKARFDRIFMTPYFAKTDEGEE 65 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHV 141 PV V + + + E + L RN ++++LD + Sbjct: 66 IIRKFKDHIPVHFVTGKLLYNVADTENPQGIAAITYVPRSGANILFHNRNRGIILILDRI 125 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+AVA +GII K + + +++ GA+ IP + + + Sbjct: 126 QDPGNMGTIIRTAVAAGIEGIICLKGSVDIYNLKVIRASMGAIFSIPILTGVSFKRLQKI 185 Query: 202 MHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + I ++ K + + + L++G E +G+R + A + + G I Sbjct: 186 RDEYPDYKLICTDLNTSKFYHEIDYQEPLMLVIGNEARGIREELLSLADIKIKIPLMGNI 245 Query: 261 KALNVSNAAAVALYIT 276 +LN + + A+ LY Sbjct: 246 DSLNAAVSTAIVLYDI 261 >gi|94311029|ref|YP_584239.1| RNA methyltransferase TrmH, group 3 [Cupriavidus metallidurans CH34] gi|93354881|gb|ABF08970.1| RNA methyltransferase TrmH, group 3 [Cupriavidus metallidurans CH34] Length = 247 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 L G H V+A L ++ + + N R D + V + + + G Sbjct: 6 LLIGFHAVNARLRQNAQSVSDIYIEANRRDRRMQDFIRLAESLGVTLHPVDAERLRGMAG 65 Query: 107 KEAVHQGLALETAP-----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ L LD + + LL++LD V DPHN+GA LR A Sbjct: 66 TDR-HQGVVARADDVSLALNLDELLDGIEGTPLLLLLDGVTDPHNLGACLRVADGAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A +AK ASGA E +PYI ++NL L+++ G IG + ++K L Sbjct: 125 VIAPKDRSVGLNATVAKVASGAAETVPYITVTNLARTLRELQERGIWVIGTADGTEKALY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A+++GAEG+G+R T+ET + + M G +++LNVS A+ V LY Sbjct: 185 DVDLKGPTAIVMGAEGEGMRRLTRETCDELVAIPMAGGVESLNVSVASGVCLYEAVRQR 243 >gi|319898202|ref|YP_004158295.1| tRNA/rRNA methyltransferase protein; TrmH family [Bartonella clarridgeiae 73] gi|319402166|emb|CBI75692.1| tRNA/rRNA methyltransferase protein; TrmH family [Bartonella clarridgeiae 73] Length = 282 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 55/272 (20%), Positives = 104/272 (38%), Gaps = 13/272 (4%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 K+ + ++ K +++ N+K ++ ++ G+ V ALN I Sbjct: 8 KVKEITSL-------SNPIIKDLKALNKK-KNRNREGIFTAEGLKLVIDALNLGWT-IQT 58 Query: 71 LLATKNALARLDWDANLPHPF----PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 L+ +KN+L + + V + ++ I ++ + + + S Sbjct: 59 LIVSKNSLNNTIIENAAANTIANGGSVIKASQKVLESITHRDNPQKVVGIFKQQWHSIKT 118 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 R + + LD V DP N+G I+R+A A GI + S ++ G++ Sbjct: 119 IIRRVDDVYIALDRVRDPGNLGTIIRTADAVGAKGIFLIGETTDPFSLETVRATMGSIFS 178 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 IP R + + G S + KN I L++G E KGL Sbjct: 179 IPLYRCNESAFLNWSTNFKGMIVGTHLKGSVDYRAIDFKNGPIILLMGNEQKGLSDVLAN 238 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++A + G +LN++ A A+ LY + Sbjct: 239 HCNNLARIPQCGYADSLNLAVATALMLYEIRR 270 >gi|257081390|ref|ZP_05575751.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol] gi|256989420|gb|EEU76722.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol] Length = 285 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 72/284 (25%), Positives = 114/284 (40%), Gaps = 12/284 (4%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65 K+EK K R + R ++ + E F++G H AL Sbjct: 2 KNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGR 61 Query: 66 -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 K+F + A PVK VP +D + VHQG+ L Sbjct: 62 GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTMSDH-GVHQGMVLAITAYQYL 120 Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 TL+ + ++LD + DPHN G+ILR+A A DGII K + + + Sbjct: 121 TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA+EHIP R++NL ++ + F G IALI+G EG Sbjct: 181 KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMYGMDYRRWNT-QGAIALIIGNEG 239 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +G+ + + + M G +++LN AA + +Y Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGRN 283 >gi|320449193|ref|YP_004201289.1| 23S rRNA methyltransferase [Thermus scotoductus SA-01] gi|320149362|gb|ADW20740.1| 23S rRNA methyltransferase [Thermus scotoductus SA-01] Length = 257 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 93/257 (36%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + K + + ++ R + + G V L + LL K Sbjct: 5 SPANPKVKALAALKER-RERERTGLFLVEGRREVERTLRAGLQLETLLLGPKAT----PE 59 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 D L P + + ++++ +E + + P + + L++VL + Sbjct: 60 DQALAGSAPTLELSQEAMERVSVRENPPPVIGVFRLPHKTLKEVQLPQDPLVLVLLGLEK 119 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GAILRSA D ++ + V+ S + + +A + + Sbjct: 120 PGNLGAILRSADGAGVDLVLVAEGVDLYSPQVIRN--STGVVFSLPVYPVAEEEAARFLE 177 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + + +K +E +A +LG E +GL A + M G+ +L Sbjct: 178 EKGLFLVAATPRGEKVYWEENYQRGVAFLLGTEDEGLSEAWLARAGVRVRIPMRGVADSL 237 Query: 264 NVSNAAAVALYITQNHF 280 NVS +AA+ LY Sbjct: 238 NVSVSAALLLYEALRQR 254 >gi|309789615|ref|ZP_07684196.1| RNA methyltransferase [Oscillochloris trichoides DG6] gi|308228351|gb|EFO81998.1| RNA methyltransferase [Oscillochloris trichoides DG6] Length = 250 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 106/247 (42%), Gaps = 13/247 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDK 103 LYG + V AL R I +L+ + + PV+ V Q +DK Sbjct: 2 TELLYGRNAVREALRANRRTIKRLVVSNGVQETGIIAEIIKLAEQIGVPVQRVERQQLDK 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + ++A HQG+ LET L+ LL++LDH+ DP NIG +LR+A Sbjct: 62 QL-RDANHQGVMLETNEYPYVELEDCLAYAAERNEPPLLLLLDHLQDPQNIGTLLRTAEV 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSD 215 G+ R + + + ++SGA EH+ + + NL + + + Sbjct: 121 VGVHGVAIPGRRAAEITPAVVNASSGATEHLRVVLVGNLAQTIATLQREGVWVVGLEDDE 180 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L+ N +AL++GAEG GL +E + L M G I +LN S A ++ LY Sbjct: 181 QAQDLDAADLNLPLALVVGAEGPGLARLVRERCDFLVRLPMAGQIASLNASVAGSITLYN 240 Query: 276 TQNHFAK 282 K Sbjct: 241 AWRQRKK 247 >gi|222055495|ref|YP_002537857.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. FRC-32] gi|221564784|gb|ACM20756.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. FRC-32] Length = 245 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 67/245 (27%), Positives = 122/245 (49%), Gaps = 11/245 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDK 103 ++ +YG+++V AL R+ F+L + R D PV+ + I + Sbjct: 2 KDEIIYGLNSVMEALR-GKRRAFELFVASGSSDRRLEKLLDLAEEKRVPVRHRDKRDISR 60 Query: 104 IVGKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + G + HQG+AL T L + R++ LL+VLD V DPHN+GA++RSA Sbjct: 61 LCGTD-HHQGIALRTERFAYAQLADILESETARSNGLLLVLDGVQDPHNLGALIRSAACA 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I K + +A + K+++GA+E I ++N+ L ++ + GF G +S Sbjct: 120 GAQGVIIPKDRAVGVTAAVEKASAGAIETIAVAEVTNIAQTLDELKAAGFWIYGADGESP 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + ++ +AL++G+EG+G+RP ++ + + + G + +LN S A + L+ Sbjct: 180 ISIFEQKLTGAVALVIGSEGEGIRPLVKKRCDILVSIPLKGGVNSLNASVAGGIMLFEVV 239 Query: 278 NHFAK 282 K Sbjct: 240 RQRDK 244 >gi|332878889|ref|ZP_08446604.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683240|gb|EGJ56122.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 246 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 114/245 (46%), Gaps = 11/245 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 Q + +YG+ V AL K+F + L R PV+ VP + ++ Sbjct: 2 QEQEYQIYGIRAVMEALEAGKTLDKVFVQKGLQGNLFRELLSLLQQSQVPVQYVPVEKLN 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ + HQG+ +P+ + + L ++LDH++D N GAI+R+A Sbjct: 62 RLT--KKNHQGVVATLSPVDYHNFEDLVISVTESGATPLFLLLDHLSDVRNFGAIIRTAE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 GII KR S S +A K+++GA+ +P ++ NL DA+ + G + + + Sbjct: 120 CAGVSGIIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQGSGIRVVAATEK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + L E + A+++GAE G+ P + S A L M G I +LNVS A AV LY Sbjct: 180 TNQLLYAEDFSVPTAIVMGAEDVGISPAVLKVVDSKAKLPMKGEIGSLNVSVACAVFLYE 239 Query: 276 TQNHF 280 Sbjct: 240 VVRQR 244 >gi|332289064|ref|YP_004419916.1| 23S rRNA [Gallibacterium anatis UMN179] gi|330431960|gb|AEC17019.1| 23S rRNA [Gallibacterium anatis UMN179] Length = 245 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 111/240 (46%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H VSA L+ + ++ K RL N H V+ + Q +DK Sbjct: 5 IYGIHAVSAVLSTTPERFIEVFVLKGREDKRLQPLLNELHQLGISVQFLTRQALDKKANG 64 Query: 108 EAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + P L + LL+VLD V DPHN+GA LR+A A D Sbjct: 65 E-THQGIIAKVQPPKEQTENDLYALLQQKKHPLLLVLDGVTDPHNLGACLRTADAAGVDA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-L 220 +I + S ++V K A GA E +P IR++NL L+ + + ++ + Sbjct: 124 VIIPRDKSAQLTSVARKVACGAAEVVPLIRVTNLARTLKTLQQDYNIWVVGTAGEANSSI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQNKLTGALALVMGAEGDGMRRLTREHCDQLVSIPMQGSVSSLNVSVATGVCLFEIVRQR 243 >gi|312865506|ref|ZP_07725733.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus downei F0415] gi|311099024|gb|EFQ57241.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus downei F0415] Length = 246 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 117/245 (47%), Gaps = 9/245 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT 100 Q + +YG+H AL K++ K + +P ++ Sbjct: 2 KRRQEHDDIVYGLHATVEALEANTGNKLYIQDDLKGKNVDKIKALAAQKKVAISWIPKKS 61 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSA 154 + ++ + AVHQG L + L ++ L+++LD + DPHN+G+ILR+A Sbjct: 62 LSEMT-QGAVHQGFVLRVSEFAYSDLAAILAQADQEDNPLILILDGLTDPHNLGSILRTA 120 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A GII K + + V+AK+++GA+EH+P R++NL+ L K+ G+ G Sbjct: 121 DATGVAGIIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEAGYWIFGTDM 180 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D + K+ALI+G EG+G+ ++ M + M G +++LN S AAAV +Y Sbjct: 181 DGTPSHKWNTA-GKLALIIGNEGRGISANLKKQVDEMITIPMTGHVQSLNASVAAAVLMY 239 Query: 275 ITQNH 279 H Sbjct: 240 EVFRH 244 >gi|260887695|ref|ZP_05898958.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena ATCC 35185] gi|260862575|gb|EEX77075.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena ATCC 35185] Length = 287 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 66/271 (24%), Positives = 122/271 (45%), Gaps = 15/271 (5%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPEN-----LFLYGVHTVSAALNNPS--RKIFQLLATKN 76 ++ R K+ ++ ++ + + L G + V AL +I K Sbjct: 13 KQKKRPAKEERTVLKRGGRQEERRDAPSADEILVGRNAVFEALKAGRGINRILVAQGAKE 72 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS---- 132 A PV+ + +D++ HQG+ AP+ +LD V Sbjct: 73 AALAPLLSLAREQGVPVRASKREKLDQLAPDMR-HQGVIAYAAPVAYASLDDVFACAEEK 131 Query: 133 ---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 LL++LD + DPHN GA+LR+A A G++ +R + +A +AK+++GA+EH+ Sbjct: 132 GEPPLLLLLDEIEDPHNFGALLRTADAAGVHGVLVPERRGCALTATVAKTSAGAVEHVRV 191 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +RI N+ ++++ G +G + + + +++G+EGKGL +ET Sbjct: 192 VRIGNIVQEMKRLKERGLWFVGADMAGDEDMFHADLTGALCIVIGSEGKGLGRLVKETCD 251 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G I +LN S A A+ +Y + Sbjct: 252 FLVRIPMHGAINSLNASVAGALLMYEARRAR 282 >gi|115352088|ref|YP_773927.1| tRNA/rRNA methyltransferase SpoU [Burkholderia ambifaria AMMD] gi|115282076|gb|ABI87593.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria AMMD] Length = 260 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 103/257 (40%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ YK++++ + H + L G H A L+ + + AT+ ALA + Sbjct: 6 SRDNPLYKRLKALAGSTSHQRRGGQALLEGFHLAGAYLDTGATPELCV-ATEGALAHAEA 64 Query: 84 DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A + + V P + + G L + P + V ++ +++ D V Sbjct: 65 QAIIARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPVQPLPERVTHTSVVL--DGVQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA A + + + S+ + +S GA + ++ Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDALAARL 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 T + + + +A + G EG G+ ++ AT + PG +++ Sbjct: 183 DVPVALTDSHGAQAVYDCD---LAGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ AAAV L+ Sbjct: 240 LNVAAAAAVCLFEQVRQ 256 >gi|330838632|ref|YP_004413212.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena ATCC 35185] gi|329746396|gb|AEB99752.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena ATCC 35185] Length = 278 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 66/271 (24%), Positives = 122/271 (45%), Gaps = 15/271 (5%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPEN-----LFLYGVHTVSAALNNPS--RKIFQLLATKN 76 ++ R K+ ++ ++ + + L G + V AL +I K Sbjct: 4 KQKKRPAKEERTVLKRGGRQEERRDAPSADEILVGRNAVFEALKAGRGINRILVAQGAKE 63 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS---- 132 A PV+ + +D++ HQG+ AP+ +LD V Sbjct: 64 AALAPLLSLAREQGVPVRASKREKLDQLAPDMR-HQGVIAYAAPVAYASLDDVFACAEEK 122 Query: 133 ---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 LL++LD + DPHN GA+LR+A A G++ +R + +A +AK+++GA+EH+ Sbjct: 123 GEPPLLLLLDEIEDPHNFGALLRTADAAGVHGVLVPERRGCALTATVAKTSAGAVEHVRV 182 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +RI N+ ++++ G +G + + + +++G+EGKGL +ET Sbjct: 183 VRIGNIVQEMKRLKERGLWFVGADMAGDEDMFHADLTGALCIVIGSEGKGLGRLVKETCD 242 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G I +LN S A A+ +Y + Sbjct: 243 FLVRIPMHGAINSLNASVAGALLMYEARRAR 273 >gi|302559961|ref|ZP_07312303.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces griseoflavus Tu4000] gi|302477579|gb|EFL40672.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces griseoflavus Tu4000] Length = 314 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 62/281 (22%), Positives = 106/281 (37%), Gaps = 15/281 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQS-FNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIF 69 ++ H AK R ++ Q Q+ R + + + G ++V AL S Sbjct: 36 EMRKGH-AKQRAAQAKVRRAQGGRPQQRRGGGRSASELVVGRNSVVEALREGVPASTLYV 94 Query: 70 QLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 Q + R + P +D++ HQGL L+ P + Sbjct: 95 QQFIDNDERVREALQLAAERGGINLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPED 153 Query: 129 -------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L++ LD V DP N+GA++RS AF G++ +R + +A K+++ Sbjct: 154 LVAGAHDEGQDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSA 213 Query: 182 GALEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GA P R +N + + + + + +++G+EGKGL Sbjct: 214 GAAARTPVARATNLTRALEAYKKAGITVVGLAADGEAELGSLAALDGPVVIVVGSEGKGL 273 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + MPG ++LN AA + LY A Sbjct: 274 SRLVGETCDHRVRIPMPGGTESLNAGVAAGIVLYEAARRRA 314 >gi|152983804|ref|YP_001350984.1| putative rRNA methylase [Pseudomonas aeruginosa PA7] gi|150958962|gb|ABR80987.1| probable rRNA methylase [Pseudomonas aeruginosa PA7] Length = 248 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 116/241 (48%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ QL + ++ + PV + +D+ Sbjct: 7 VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64 Query: 108 EAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +L L+ + LL+ LD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGENMLEELLERAEGAPLLLALDGVTDPHNLGACLRTADAAGVL 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A + K A GA E IP + ++NL L+K+ G +G + ++ K L Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q L++GAEGKG+R T+E +A L M G + +LNVS A V L+ Sbjct: 185 YQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244 Query: 281 A 281 Sbjct: 245 T 245 >gi|319786532|ref|YP_004146007.1| RNA methyltransferase, TrmH family, group 3 [Pseudoxanthomonas suwonensis 11-1] gi|317465044|gb|ADV26776.1| RNA methyltransferase, TrmH family, group 3 [Pseudoxanthomonas suwonensis 11-1] Length = 248 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 117/240 (48%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ GV+ V++A+ N + + ++L +A + + V+ V Q +D I G Sbjct: 7 WVVGVNAVASAIENDAEHVREVLVDSSARNPRLVEIEEQARRYGIEVRKVATQALDGIGG 66 Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A A ++A LL+VLD V DPHN+GA LRSA+A Sbjct: 67 NVRHQGVAARYAAAKTWGEGELAGLVEAADGKALLLVLDGVQDPHNLGACLRSALAAGAT 126 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ + S +A + K+++GA + +P ++++NL L+++ G GL+ + + L Sbjct: 127 AVVIPRDKSAPVNATVRKTSAGAADRLPVVQVTNLARTLRELQKQGVWIYGLAGEVDETL 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +AL+LG E GLR T+ET + + MPG +++LNVS AA V L+ Sbjct: 187 YGVDLKGNVALVLGGEADGLRRLTRETCDGLVRIPMPGDVESLNVSVAAGVCLFEAVRQR 246 >gi|262375582|ref|ZP_06068815.1| rRNA methylase [Acinetobacter lwoffii SH145] gi|262309836|gb|EEY90966.1| rRNA methylase [Acinetobacter lwoffii SH145] Length = 258 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 104/258 (40%), Gaps = 7/258 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K ++ +++ + + L G H A L + +RKI + T++AL+ D+ Sbjct: 8 SKDNPKIKHLRGLIEQNTYRKKQGQTVLEGTHLSLAWL-HENRKIDSIFTTEHALSHPDF 66 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + L + V +++ K + + + L++ ++V D Sbjct: 67 EKILAKYTGMVFVLSESLYKDLSTLGTSLACLAVVTLPTANYALDFKADTLIL--ENVQD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LRSA A + I+ TK + S + ++ GA + L L++ Sbjct: 125 PGNVGTLLRSAAAAGIEQIVCTKGSASLWSPRVLRAGMGAHFTLQTFENIALEQILEQFQ 184 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + T ++S + ILG EG+G+ + A + PG ++L Sbjct: 185 IPVYVTSSHRAESLYSKD---LRKPCVWILGNEGQGVSDYAMQHA-EAVSIPQPGGQESL 240 Query: 264 NVSNAAAVALYITQNHFA 281 NV+ A ++ + Sbjct: 241 NVAIAGSICFFEMVRQRI 258 >gi|297545334|ref|YP_003677636.1| TrmH family RNA methyltransferase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843109|gb|ADH61625.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 249 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 9/244 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103 E ++G + V A+ + I ++ +K A + NL V T +T+ K Sbjct: 4 KEQDVIFGRNPVMEAIKSGKE-IEKIYISKTAKGNISKIINLAKEAGIVVSTTDNETLSK 62 Query: 104 IVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + G + +AL D + L++LD + DPHN+GAI+RSA AF Sbjct: 63 LAGSQNHQGIVALSAVYQYFEVEDLLEYAEQKKEKPFLLILDEITDPHNLGAIIRSAEAF 122 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A + K+++GA+EH+ ++SN+ + ++ + G +G + Sbjct: 123 GVHGIIIPKRRAVGVNATVVKTSAGAVEHMKIAKVSNINNTIRNLKERGLWIVGTDVNGG 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K E+ + +AL++G EGKG+ + + + M G I +LN S AA++ +Y Sbjct: 183 KSFEEIDYDFPVALVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASLLVYQVV 242 Query: 278 NHFA 281 + Sbjct: 243 SKRK 246 >gi|241204147|ref|YP_002975243.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858037|gb|ACS55704.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 296 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 141/267 (52%), Positives = 182/267 (68%), Gaps = 14/267 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQS--FNQKSRHTSQPENLF-----------LYGVHTVSAA 60 S KD+HYA LRR HRD K+ + + + + + LYG+HTV AA Sbjct: 16 SAKDTHYATLRRAHRDAKRERGEIPTPQPHKRKRGGDDWKPPALAPDQVHLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP RK L T+NALARL+ D P + V PQ IDK++G EA+HQG+ LET P Sbjct: 76 LDNPERKKITLFVTQNALARLEVDVEAL-GMPFEIVSPQEIDKVLGPEAIHQGVMLETRP 134 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A++ S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKSA Sbjct: 135 LPVRRLEALKESPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALE IPYI+++NL DAL ++H GF TIGL S+ PLE +K+AL+LG+EGKGL Sbjct: 195 SGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGEKVALVLGSEGKGL 254 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267 R KT+ET ++A L MPG IK+LNVSN Sbjct: 255 RQKTRETVNALARLDMPGAIKSLNVSN 281 >gi|33594398|ref|NP_882042.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis Tohama I] gi|33597117|ref|NP_884760.1| putative tRNA/rRNA methyltransferase [Bordetella parapertussis 12822] gi|33600961|ref|NP_888521.1| putative tRNA/rRNA methyltransferase [Bordetella bronchiseptica RB50] gi|52783303|sp|Q7VTK4|RLMB_BORPE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|52783304|sp|Q7W7I7|RLMB_BORPA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|52783305|sp|Q7WKX5|RLMB_BORBR RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|33564473|emb|CAE43786.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis Tohama I] gi|33566568|emb|CAE37825.1| putative tRNA/rRNA methyltransferase [Bordetella parapertussis] gi|33575396|emb|CAE32473.1| putative tRNA/rRNA methyltransferase [Bordetella bronchiseptica RB50] gi|332383809|gb|AEE68656.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis CS] Length = 245 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 110/238 (46%), Gaps = 7/238 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L G H V A L + I ++ ++ + + V V + +D + Sbjct: 6 VLAGFHAVVARLRHAPESIKEIYVEASRRDKRMQTFLEQAERAGRRVHPVAAERLDGLAR 65 Query: 107 KEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A+ L LD + LL++LD V DPHN+GA LR+A A + Sbjct: 66 GTRHQGVVAVAEERSLAVGIDEVLDVIEGPALLLILDGVTDPHNLGACLRTADAAGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + + +A + + A GA + +PY+ ++NL ++++ +G + + + Q Sbjct: 126 IAPRDRAVGLNATVQRVACGAADTVPYLTVTNLARTMRELKERDVWLVGTDDQAGESMHQ 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A ++GAEG+G+R T+ET + + M G +++LNVS A+AV LY + Sbjct: 186 VDARRSMAWVMGAEGEGMRRLTRETCDQLVRIPMLGSVESLNVSVASAVCLYESVRQR 243 >gi|118580099|ref|YP_901349.1| RNA methyltransferase [Pelobacter propionicus DSM 2379] gi|118502809|gb|ABK99291.1| RNA methyltransferase, TrmH family, group 3 [Pelobacter propionicus DSM 2379] Length = 251 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 119/242 (49%), Gaps = 12/242 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDK 103 ++GV+ V AL R+IF L + + V + + + Sbjct: 2 REELVFGVNPVREALR-GKREIFGLYVQSTATDHRLDKILELARERGVRVIRREREDLTR 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + G + HQG+AL+ AP LD + L+VLD + DPHN+GA++R+A Sbjct: 61 MCG-SSHHQGMALKVAPFSYADLDDLIEAGDREDAAGFLLVLDGIQDPHNLGALIRTAAC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G++ + + + + K+++GA+E I +++N+ +L+K+ G+ GLS ++ Sbjct: 120 AGASGVVIPRDRACAITPAAEKASAGAVETITVAQVTNIAQSLEKLKRSGYWVYGLSGEA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L + + KIAL++G EG+G+RP ++ ++ + + G + +LN S A +ALY Sbjct: 180 DASLYEVAFSGKIALVIGGEGEGIRPLVRKQCDALVSIPLYGGVGSLNASVAGGIALYEV 239 Query: 277 QN 278 Sbjct: 240 AR 241 >gi|229135394|ref|ZP_04264183.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196] gi|228648090|gb|EEL04136.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196] Length = 265 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDNKALFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPVVKGNLEEWVDKLKENNVPVYGTA-LENGVPFAEVTPAGSFALIVGNEGSGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKSDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|229013763|ref|ZP_04170891.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048] gi|229169288|ref|ZP_04296999.1| RNA methyltransferase, TrmH [Bacillus cereus AH621] gi|228614183|gb|EEK71297.1| RNA methyltransferase, TrmH [Bacillus cereus AH621] gi|228747432|gb|EEL97307.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048] Length = 265 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDNKALFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPVVKGNLEEWVDKLKENNVPVYGTA-LENGVPFGEVTPAGSFALIVGNEGSGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKSDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|163942296|ref|YP_001647180.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus weihenstephanensis KBAB4] gi|163864493|gb|ABY45552.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus weihenstephanensis KBAB4] Length = 254 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + F+ G H V A Sbjct: 1 MKNIDSVQNPRVKQWKKLQTK-------------------KERDNKALFFVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 42 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 97 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 153 QGSIFHLPVVKGNLEEWVDKLKENNVPVYGTA-LENGVPFGEVTPAGSFALIVGNEGSGV 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + + ++ + G ++LNV+ AA + Y Q Sbjct: 212 RQEILAKSDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248 >gi|167765723|ref|ZP_02437776.1| hypothetical protein CLOSS21_00211 [Clostridium sp. SS2/1] gi|167712596|gb|EDS23175.1| hypothetical protein CLOSS21_00211 [Clostridium sp. SS2/1] gi|291559859|emb|CBL38659.1| rRNA methylase, putative, group 3 [butyrate-producing bacterium SSC/2] Length = 246 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 105/245 (42%), Gaps = 12/245 (4%) Query: 45 QPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + + G + V AL P KIF L ++ R +K V + ++ Sbjct: 2 NHKEDLIAGRNAVIEALRAKKPIDKIFVLDGCQDGPIRTIVREAKKTDAILKFVDKERLN 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ + HQG+ A T++ ++LD + DPHN+GAI+R+A Sbjct: 62 QLTNEH--HQGVVAIVAAYEYGTIEDLFKRAEEKGEDPFFILLDGIEDPHNLGAIIRTAN 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 G+I K + + +AK+++GA+ + P ++++N+ + ++ G Sbjct: 120 LAGAHGVIIPKHRAVGITPTVAKTSAGAINYTPVVKVTNIGKTMDELKERGMWFACA-DM 178 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + ++ I L++G EG G+ +E ++ + M G I +LN S AA V + Sbjct: 179 DGEVIYRQNLTGSIGLVIGNEGSGVSRLVKEKCDFISSIPMKGDIDSLNASVAAGVLAFE 238 Query: 276 TQNHF 280 Sbjct: 239 VVRQR 243 >gi|167625583|ref|YP_001675877.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella halifaxensis HAW-EB4] gi|167355605|gb|ABZ78218.1| RNA methyltransferase, TrmH family, group 3 [Shewanella halifaxensis HAW-EB4] Length = 246 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 65/238 (27%), Positives = 112/238 (47%), Gaps = 10/238 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 +G+H V A L N ++ ++ + RL + V+ + +D+ Sbjct: 8 FGLHAVEAVLKNSPERVIEMWVLQGRDDARLTPILAMAAEWGVSVQYASRKALDEKSD-G 66 Query: 109 AVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ + P + + + L++LD V DPHN+GA LR+A A G+ Sbjct: 67 GQHQGVVAKVKPAKILSDNELSAMLEKTEVPFLLILDGVTDPHNLGACLRNADAAGVHGV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + V++K A GA E +P +++NL ++ + G IG + ++ L Q Sbjct: 127 IVPKDNSVGLTPVVSKVACGAAEVVPLYQVTNLARTMRSLQEKGIWIIGAAGEADCELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A+ +GAEGKGLR ++E+ ++ + M G + +LNVS A V L+ Sbjct: 187 ASLTGPLAIAMGAEGKGLRRLSRESCDTLVSIPMAGSVSSLNVSVATGVCLFEAVRQR 244 >gi|82703073|ref|YP_412639.1| RNA methyltransferase TrmH, group 3 [Nitrosospira multiformis ATCC 25196] gi|82411138|gb|ABB75247.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosospira multiformis ATCC 25196] Length = 249 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 111/242 (45%), Gaps = 7/242 (2%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 + F++G H +++ L + + ++ ++ AR + + Sbjct: 2 SGSRFIFGFHAITSRLRQNAASVREVFLDAERRDQRARDLAALAEAQDIRLIACDNARLM 61 Query: 103 KIVGKEAVH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + G + + + LD + LL+VLD + DPHN+GA LR A AF Sbjct: 62 ALAGNARHQGVVARIDSARAYVDIDDVLDTLAEPALLLVLDGIQDPHNLGACLRVADAFG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K + +A + K ASGA +++PYI ++NL L+ + G +G ++D+ Sbjct: 122 VHAVIAPKDRAVGLTAAVHKVASGAADNVPYISVTNLARTLRGLKQRGVTVLGTAADADT 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L IA +LG+E KG+R T+E + + M G +++LNVS +A + L+ T Sbjct: 182 QLGVLQLAGPIAWVLGSEEKGMRRLTRENCDQLVSIPMLGSVESLNVSVSAGICLFETHR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|313158993|gb|EFR58370.1| RNA methyltransferase, TrmH family, group 3 [Alistipes sp. HGB5] Length = 243 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 12/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G+ V+ A+ + I +L K A L D H V+ VP + ++++ Sbjct: 4 IIFGIRPVAEAIEAGKQ-IEKLYIRKGAEGQLMSELRDLCFRHKVRVQEVPVEKLNRLT- 61 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ + + + L + + L+++ D V D N GAI RSA Sbjct: 62 -RGNHQGVVAQISAIEYVGLADILERVPEDETPLVVIFDGVTDVRNFGAIARSAECAGAH 120 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+IT + S +A +S++GAL IP R+ ++ + ++ + + GFQ + + S+K L Sbjct: 121 GLITPLKNSAPVNAEAIRSSAGALTAIPVCRVGSIRNTVKLLQTEGFQIVAATEKSRKLL 180 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 AL++GAE G+ + + + + G I++LNVS AAAV L+ Sbjct: 181 YDADFRKPTALVMGAEDTGISKEVLKLCDEQLAIPLIGHIESLNVSAAAAVMLFEAVRQR 240 Query: 281 A 281 Sbjct: 241 I 241 >gi|229062245|ref|ZP_04199567.1| RNA methyltransferase, TrmH [Bacillus cereus AH603] gi|228717073|gb|EEL68752.1| RNA methyltransferase, TrmH [Bacillus cereus AH603] Length = 265 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 98/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDTKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + S ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKESNVSVYGTA-LENGVPFGEVTPAGSFALIVGNEGSGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|239825674|ref|YP_002948298.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. WCH70] gi|239805967|gb|ACS23032.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. WCH70] Length = 245 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 117/243 (48%), Gaps = 13/243 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKI 104 F+ G + V AL + R+I ++ + + + V+ VP + +D++ Sbjct: 1 MDFIIGKNPVIEALKS-EREINKIWIAEGVQRNSIQPIIQLAKQNGVLVQYVPKKKLDQM 59 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E HQG+ + A +D ++LD + DPHN+G+I+R+A A Sbjct: 60 V--EGAHQGVVAQVAAYRYYEVDDLFARASEKNEPPFFLILDELEDPHNLGSIMRTADAV 117 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR S +A +AK+++GA+E++P R++NL + ++ G +G + +K Sbjct: 118 GAHGIIIPKRRSVGLTATVAKASTGAIEYVPVARVTNLARTIDELKERGVWIVGTDAKAK 177 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL++G+EGKG+ E + HL M G + +LN S AA++ +Y Sbjct: 178 DDYRSLDGTMPLALVIGSEGKGIGRLILEKCDFLIHLPMRGHVTSLNASVAASLLMYEVY 237 Query: 278 NHF 280 Sbjct: 238 RKR 240 >gi|325677835|ref|ZP_08157477.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8] gi|324110389|gb|EGC04563.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8] Length = 270 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 102/264 (38%), Gaps = 8/264 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-----KIFQLLATKNAL 78 +++ K++ ++ + + G+ A+ + K+ + T+NA Sbjct: 5 SKDNPKIKQLAKLYVSRKYRRETGLFVIEGLRGCVDAVRDDVEHDGLLKVDGVYYTENAF 64 Query: 79 ARLDWDANLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 + + P + + D+I ++ + + D ++ Sbjct: 65 DSAEGFGEVLEKIPDSRRFVITREIADRISDTDSCQGVFVTAKRLDKALSADGLKAGGKY 124 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD + DP N+G ++R+A A DG++ + + +SA G++ + + Sbjct: 125 LVLDELQDPGNLGTMIRTADAVGLDGVVLSGNCVDLYNPKTVRSAVGSMPRVDIFVEKDF 184 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + G +T D ++Q A+++G EG+GL + E + + Sbjct: 185 EAVTEMLGKKGIRTAAAVIDGGTEIKQFDFGGGCAVVIGNEGRGLSQEHVEMCSDRVTIK 244 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 M G I +LN + AA + L+ Sbjct: 245 MYGHIDSLNAATAATIFLWEMTRR 268 >gi|256786299|ref|ZP_05524730.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24] gi|289770189|ref|ZP_06529567.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24] gi|289700388|gb|EFD67817.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24] Length = 314 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 68/281 (24%), Positives = 116/281 (41%), Gaps = 15/281 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQS-FNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIF 69 ++ H AK R + ++ Q+ R + + + G + V AL S Sbjct: 36 EMRKGH-AKQRAANAKARRTTGGRPQQRRGGGRSTSELVVGRNPVYEALREGVPASTLYV 94 Query: 70 QLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 Q + R + P +D++ HQGL L+ P + Sbjct: 95 QQFIDNDERVREALQLAAERGGINLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPED 153 Query: 129 -------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L++ LD V DP N+GA++RS AF G++ +R + +A K+++ Sbjct: 154 LVAAAHDEGTDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSA 213 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGL 240 G P R +NLT AL++ G +GL++D + L + + +++G+EGKGL Sbjct: 214 GTAARTPVARATNLTRALEQYQKAGITVVGLAADGEAELGDLAALDGPVVIVVGSEGKGL 273 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + MPG ++LN AA + LY + Sbjct: 274 SRLVGETCDFRVRIPMPGGAESLNAGVAAGIVLYEAARRRS 314 >gi|306826620|ref|ZP_07459925.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782] gi|304431198|gb|EFM34202.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782] Length = 248 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +L K++ + + P +T+ ++ Sbjct: 10 NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 69 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + +D + L+++LD + DPHN+G+ILR+A A + Sbjct: 70 -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K S + V++K+++GA+EHIP R++NL+ L K+ S GF G + Sbjct: 129 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKSRGFWIFGTDMNGTPSD 188 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 N K+AL++G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 189 CWNT-NGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247 >gi|94989283|ref|YP_597384.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS9429] gi|94993172|ref|YP_601271.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS2096] gi|94542791|gb|ABF32840.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS9429] gi|94546680|gb|ABF36727.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS2096] Length = 257 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +L K++ + + P +T+ ++ Sbjct: 19 NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 78 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + +D + L+++LD + DPHN+G+ILR+A A + Sbjct: 79 -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 137 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K S + V++K+++GA+EHIP R++NL+ L K+ S GF G + Sbjct: 138 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKSRGFWIFGTDMNGTPSD 197 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 N K+AL++G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 198 CWNT-NGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 256 >gi|257886070|ref|ZP_05665723.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501] gi|257821926|gb|EEV49056.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501] Length = 286 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 129/283 (45%), Gaps = 17/283 (6%) Query: 13 FSLKDSHYAKL----RRNHR-DYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65 + H +K ++ +R KK NQ ++ F++G H AL Sbjct: 3 KERTNKHQSKRGFEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHVAVEALQQGR 62 Query: 66 -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 K+F ++ + PVK VP Q ++ + VHQG+ L P Sbjct: 63 GNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETLSDH-GVHQGVVLAITPYEYL 121 Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 +LD + ++LD + DPHN G+ILR+A A DG+I K + + ++ Sbjct: 122 SLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVT 181 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA+EH+P R++NL A+Q++ GF G + K IAL++G EG Sbjct: 182 KTSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTGTNFQKWNAK-GSIALVIGNEG 240 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 KG+ P ++ + + M G +++LN S AA + +Y + Sbjct: 241 KGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283 >gi|39996562|ref|NP_952513.1| RNA methyltransferase [Geobacter sulfurreducens PCA] gi|39983443|gb|AAR34836.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sulfurreducens PCA] gi|298505578|gb|ADI84301.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter sulfurreducens KN400] Length = 245 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 116/244 (47%), Gaps = 12/244 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103 + LYG+++V AL SR+ F+L ++ R PV+T + + + Sbjct: 2 KEEILYGINSVMEALR-GSRRAFELFVSRETHDRRTEKLLAFAAERGVPVRTRDKRDLAR 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156 + G + HQG+AL L+ + S L++VLD + DPHN+GA++RSA Sbjct: 61 LCGTD-HHQGVALRVEGFAYAALEDIIASWQSSGEPGLILVLDGIQDPHNLGALIRSAAC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I + + +A + K ++GA E IP +++N+ AL+ + GF G + + Sbjct: 120 AGAHGVIIPRDRAAGVTASVEKISAGATETIPVAQVTNVVQALETLKEEGFWAFGTADSA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L + +++G EG+G+RP ++ + + + G + +LN S A V L+ Sbjct: 180 ASSLYSHDLTGNVVIVIGGEGEGVRPLVRKKCDFLVAIPLKGGVSSLNASVAGGVVLFEV 239 Query: 277 QNHF 280 Sbjct: 240 VRQR 243 >gi|21222631|ref|NP_628410.1| tRNA/rRNA methyltransferase [Streptomyces coelicolor A3(2)] gi|7242757|emb|CAB77330.1| putative tRNA/rRNA methyltransferase [Streptomyces coelicolor A3(2)] Length = 314 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 68/281 (24%), Positives = 116/281 (41%), Gaps = 15/281 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQS-FNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIF 69 ++ H AK R + ++ Q+ R + + + G + V AL S Sbjct: 36 EMRKGH-AKQRAANAKARRTTGGRPQQRRGGGRSTSELVVGRNPVYEALREGVPASTLYV 94 Query: 70 QLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 Q + R + P +D++ HQGL L+ P + Sbjct: 95 QQFIDNDERVREALQLAAERGGINLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPED 153 Query: 129 -------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L++ LD V DP N+GA++RS AF G++ +R + +A K+++ Sbjct: 154 LVAAAHDEGIDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSA 213 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGL 240 G P R +NLT AL++ G +GL++D + L + + +++G+EGKGL Sbjct: 214 GTAARTPVARATNLTRALEQYQKAGITVVGLAADGEAELGDLAALDGPVVIVVGSEGKGL 273 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + MPG ++LN AA + LY + Sbjct: 274 SRLVGETCDFRVRIPMPGGAESLNAGVAAGIVLYEAARRRS 314 >gi|50915006|ref|YP_060978.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10394] gi|50904080|gb|AAT87795.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10394] Length = 257 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +L K++ + + P +T+ ++ Sbjct: 19 NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 78 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + +D + L+++LD + DPHN+G+ILR+A A + Sbjct: 79 -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 137 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K S + V++K+++GA+EHIP R++NL+ L K+ + GF G + Sbjct: 138 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQILDKLKARGFWIFGTDMNGTPSD 197 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 N K+AL++G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 198 CWNT-NGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 256 >gi|217970565|ref|YP_002355799.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T] gi|217507892|gb|ACK54903.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T] Length = 277 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 103/260 (39%), Gaps = 9/260 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82 R++ K++ + +R + + L G H V +AL + L+ +++ L R + Sbjct: 11 SRDNAFVKRLHALAHSARDRRKLDETVLDGAHLVESALAAG-VALRALVVSESGLLREEH 69 Query: 83 --WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 A P P + + ++ LA P +P+ + L+V+D Sbjct: 70 RRLLAAAPAEVPRYRLGDALFAHVSPVDSPAGLLATIAMPASTPSAPGDAS---LIVVDG 126 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G++LR+A A + + + + S ++ GA + L L+ Sbjct: 127 VQDPGNLGSLLRTAAAAGIRHALLGEGCAQAWSPRALRAGMGAQFVVRIEEGCELLARLE 186 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + PL + +A + GAEG+GL P A + M I Sbjct: 187 SYPGLCL--ATALREDAHPLYELDLRGPVAWLFGAEGQGLSPALLARADGCVIIPMTAGI 244 Query: 261 KALNVSNAAAVALYITQNHF 280 ++LNV+ AAAV L+ Sbjct: 245 ESLNVAAAAAVCLFEQARQL 264 >gi|302206864|gb|ADL11206.1| SpoU rRNA Methylase family protein [Corynebacterium pseudotuberculosis C231] Length = 313 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 67/287 (23%), Positives = 128/287 (44%), Gaps = 24/287 (8%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ +H KL + RD + RH + + G + V L++ Sbjct: 37 TPKAEDRVYHA--AHKRKLEKQRRD---------QGRHKKEETAELVVGRNPVVECLHS- 84 Query: 65 SRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +A P+ V +D++ G +HQG+ L+ P Sbjct: 85 KVPATSLYIAEGTKNDARLSEAVQMAHRRGIPLIEVARHELDRMTG-NGMHQGIGLQIPP 143 Query: 121 LLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + +++VLD++ DP N+GA++RS AF G++ +R S S + Sbjct: 144 YKYVEVYDLITQAKDSGEPGMIVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVT 203 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 AV ++++G +P + +N+T AL++ G+Q +GL + L+ + +++ Sbjct: 204 AVAWRTSAGTAARLPVAKATNITRALKEFQQNGYQVVGLDAGGDATLDTYDGKGPVVIVV 263 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G+EGKG+ +ET S+ + M +++LN S AA V L Sbjct: 264 GSEGKGISRLVRETCDSIMSIPMARWVESLNASVAAGVVLSEFARQR 310 >gi|300859174|ref|YP_003784157.1| hypothetical protein cpfrc_01757 [Corynebacterium pseudotuberculosis FRC41] gi|300686628|gb|ADK29550.1| hypothetical protein cpfrc_01757 [Corynebacterium pseudotuberculosis FRC41] gi|302331428|gb|ADL21622.1| SpoU rRNA Methylase family protein [Corynebacterium pseudotuberculosis 1002] gi|308277116|gb|ADO27015.1| SpoU rRNA Methylase family protein [Corynebacterium pseudotuberculosis I19] Length = 313 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 67/287 (23%), Positives = 128/287 (44%), Gaps = 24/287 (8%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ +H KL + RD + RH + + G + V L++ Sbjct: 37 TPKAEDRVYHA--AHKRKLEKQRRD---------QGRHKKEETAELVVGRNPVVECLHS- 84 Query: 65 SRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +A P+ V +D++ G +HQG+ L+ P Sbjct: 85 KVPATSLYIAEGTKNDARLSEAVQMAHRRGIPLIEVARHELDRMTG-NGMHQGIGLQIPP 143 Query: 121 LLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + +++VLD++ DP N+GA++RS AF G++ +R S S + Sbjct: 144 YKYVEVYDLITQAKDSGEPGMIVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVT 203 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 AV ++++G +P + +N+T AL++ G+Q +GL + L+ + +++ Sbjct: 204 AVAWRTSAGTAARLPVAKATNITRALKEFQQNGYQVVGLDAGGDATLDTYDGKGPVVIVV 263 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G+EGKG+ +ET S+ + M +++LN S AA V L Sbjct: 264 GSEGKGISRLVRETCDSIMSIPMARWVESLNASVAAGVVLSEFARQR 310 >gi|71904302|ref|YP_281105.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180] gi|94991229|ref|YP_599329.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10270] gi|94995142|ref|YP_603240.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10750] gi|71803397|gb|AAX72750.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180] gi|94544737|gb|ABF34785.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10270] gi|94548650|gb|ABF38696.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10750] Length = 257 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +L K++ + + P +T+ ++ Sbjct: 19 NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 78 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + +D + L+++LD + DPHN+G+ILR+A A + Sbjct: 79 -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 137 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K S + V++K+++GA+EHIP R++NL+ L K+ + GF G + Sbjct: 138 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGFWIFGTDMNGTPSD 197 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 N K+AL++G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 198 CWNT-NGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 256 >gi|15675741|ref|NP_269915.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes M1 GAS] gi|19746851|ref|NP_607987.1| tRNA/rRNA methyltransferase [Streptococcus pyogenes MGAS8232] gi|71911465|ref|YP_283015.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005] gi|139474428|ref|YP_001129144.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str. Manfredo] gi|13622961|gb|AAK34636.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes M1 GAS] gi|19749091|gb|AAL98486.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes MGAS8232] gi|71854247|gb|AAZ52270.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005] gi|134272675|emb|CAM30946.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str. Manfredo] Length = 248 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +L K++ + + P +T+ ++ Sbjct: 10 NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 69 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + +D + L+++LD + DPHN+G+ILR+A A + Sbjct: 70 -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K S + V++K+++GA+EHIP R++NL+ L K+ + GF G + Sbjct: 129 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGFWIFGTDMNGTPSD 188 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 N K+AL++G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 189 CWNT-NGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247 >gi|56807805|ref|ZP_00365654.1| COG0566: rRNA methylases [Streptococcus pyogenes M49 591] gi|209560082|ref|YP_002286554.1| 23S rRNA methyltransferase [Streptococcus pyogenes NZ131] gi|209541283|gb|ACI61859.1| 23S rRNA methyltransferase [Streptococcus pyogenes NZ131] Length = 248 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +L K++ + + P +T+ ++ Sbjct: 10 NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 69 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + +D + L+++LD + DPHN+G+ILR+A A + Sbjct: 70 -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K S + V++K+++GA+EHIP R++NL+ L K+ + GF G + Sbjct: 129 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGFWIFGTDMNGTPSD 188 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 N K+AL++G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 189 CWNT-NGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247 >gi|307150692|ref|YP_003886076.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 7822] gi|306980920|gb|ADN12801.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 7822] Length = 313 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 70/271 (25%), Positives = 125/271 (46%), Gaps = 15/271 (5%) Query: 23 LRRNHRDYKKMQS--FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKN 76 L R + + + ++ SQ E +YG H V AL +R+I ++ + Sbjct: 25 LERRNPKPVTVVAPLASEPPEQPSQEEADLIYGRHPVLTALE-GTRQINRIWVISKLRYD 83 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------V 129 + + + V P + ++ A HQG+ + +P L Sbjct: 84 SRFHSLLTQAKANGTVIDEVSPHRLTQLTD-GANHQGIVAQVSPYTYVELGDLIEQARAS 142 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + ++++ D + DPHN+GAI+R+ A G++ +R + ++ + K A+GALEH+P Sbjct: 143 TPAPVILIADGITDPHNLGAIIRTTEAIGAQGLVIPQRRAVGITSSVMKVAAGALEHLPV 202 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R+ NL+ AL+++ GF G S K L + + L++G+EG+GL TQ Sbjct: 203 ARVVNLSRALEELKEAGFWIYGTMSQGSKALHTIDFSGAVGLVVGSEGEGLSLLTQRCCD 262 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + + G +LN S AAA+ALY Sbjct: 263 ALISIPLAGKTPSLNASVAAAIALYEVYRQR 293 >gi|251781697|ref|YP_002995999.1| 23S rRNA Gm2251 methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390326|dbj|BAH80785.1| 23S rRNA Gm2251 methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 248 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +L+ K++ + + P +T+ ++ Sbjct: 10 NDIVYGVHAVTESLHANTGNKLYIQEDLRGKNVDNIKRLATEKKVSISWTPKKTLSEMT- 68 Query: 107 KEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD ++ L+++LD + DPHN+G+ILR+A A + Sbjct: 69 EGAVHQGFVLRVSAFAYTELDVILEKAEQEDNPLILILDGLTDPHNLGSILRTADATNVC 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V++K+++GA+EH+P R++NL+ L K+ + GF T G + Sbjct: 129 GVIIPKHRAVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDKLKAKGFWTYGTDMNGTPSH 188 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 189 RWNT-SGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247 >gi|307294700|ref|ZP_07574542.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum L-1] gi|306879174|gb|EFN10392.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum L-1] Length = 265 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 91/261 (34%), Gaps = 8/261 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K+++S +K + G+ ++ A ++L + L D Sbjct: 9 SNPLVKRVRSLREK-KFRKAEGLFLAEGLRILTEAREEGVLP--EMLFHAGSTHPLAIDL 65 Query: 86 NLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 V P + KI GK+ + + L + + +V + Sbjct: 66 IAAMEAAGGDVIETTPDILSKISGKDNPQAVVGVYRDRLTPLAKLDRTKADIWIVAQSLR 125 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ILR+ A G+I S +++ GAL P + + Sbjct: 126 DPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRASMGALFTQPITQARWGEFMH-WL 184 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + IG S + ++ L++G E +GL + + + M G + Sbjct: 185 RQGPGELIGTSLKATHDYQEPRYQSPSFLLVGNEAQGLPESYEAECDLLVKMPMLGKADS 244 Query: 263 LNVSNAAAVALYITQNH-FAK 282 LN + A AV Y N AK Sbjct: 245 LNAAVACAVMAYELLNQKRAK 265 >gi|312884705|ref|ZP_07744406.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367618|gb|EFP95169.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] Length = 246 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 117/242 (48%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAFVLKGRQDDRLRPILNDLQVCGVSIQLMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLL---SPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFS 158 K A HQG+ P LD + LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-KGANHQGIMARVKPAKLLNEHDLDNIIAQHTAPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + +A ++K A GA E +P IR++NL ++ + G +G + ++ + Sbjct: 122 VAAVIVPKDKSANINATVSKVACGAAETVPLIRVTNLARTMRALQEQGVWFVGTAGEATQ 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ V L+ Sbjct: 182 DIYQAKLTGALAIVMGAEGDGMRRLTRETCDDLIKIPMAGTVSSLNVSVASGVCLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|83591297|ref|YP_431306.1| RNA methyltransferase TrmH, group 3 [Moorella thermoacetica ATCC 39073] gi|83574211|gb|ABC20763.1| RNA methyltransferase TrmH, group 3 [Moorella thermoacetica ATCC 39073] Length = 246 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 107/239 (44%), Gaps = 11/239 (4%) Query: 53 GVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 G + V AL KI + + P++ V ++K+ G Sbjct: 7 GRNQVREALRAGRPLNKILLAPHLEGQAIGEIINLARERGVPLQRVNRAALEKLAGHH-- 64 Query: 111 HQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ A L+ L++LD V DPHN+GAILRSA A G+I Sbjct: 65 HQGVVALAAAREYADLEDLLARAGEAGEPPFLIMLDRVEDPHNLGAILRSAEAVGAHGVI 124 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +R +A +A++A GA E++P R++NL L+++ G IG + D+ + Sbjct: 125 IPRRRGVGLTAAVARAAVGAQEYVPVARVTNLARTLEELKGKGLWAIGAAGDAGQEAFNA 184 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + L+LG+EG+GL P + HL M G I +LNV+ AA V +Y + Sbjct: 185 DFTVPLVLVLGSEGRGLSPLVRSRCDFTVHLPMRGRINSLNVATAATVLMYEVLRQRGQ 243 >gi|254497333|ref|ZP_05110138.1| tRNA/rRNA methyltransferase [Legionella drancourtii LLAP12] gi|254353445|gb|EET12175.1| tRNA/rRNA methyltransferase [Legionella drancourtii LLAP12] Length = 250 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106 F+YGVH VSA L NP R +L +++ + + D + ++ + Q +++ Sbjct: 5 FVYGVHAVSALLANPHRTTKKLFVSQDRVDKRLQDLVDKAVQARIGIEKLSTQQMNQRFA 64 Query: 107 KEAVHQGL------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + + L L++ ++ L+++LD + DPHN+GA LR+A A D Sbjct: 65 EFNHQGIVASASALPDYNESHLRALLESSKSPGLILILDGITDPHNLGACLRTADATGVD 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S S + V++K A GA E +P +R++NL ++ + G G + +++ L Sbjct: 125 FVVIPKDKSASITPVVSKVACGAAESVPLVRVTNLVRSMDLLKEQGVWIYGAAGEAEHSL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q IAL++GAEG+GLR T+E + L M G + +LNVS A V+LY Sbjct: 185 YQVDCRGTIALVMGAEGEGLRRLTREHCDGLFSLPMSGSVDSLNVSVATGVSLYEVLRQR 244 >gi|229828825|ref|ZP_04454894.1| hypothetical protein GCWU000342_00908 [Shuttleworthia satelles DSM 14600] gi|229791988|gb|EEP28102.1| hypothetical protein GCWU000342_00908 [Shuttleworthia satelles DSM 14600] Length = 246 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 11/240 (4%) Query: 50 FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL + ++F L + + R + V + +D+I + Sbjct: 7 VIEGRNAVLEALRSGKPVDRVFILAKSYDGPIRTIVREAKKRDCILSFVDKKRLDEIS-E 65 Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG A T++ L +LD++ DPHN+GAI+R+A Sbjct: 66 TGKHQGAIAYIAAYRYSTVEDILALARKRGEDPFLFLLDNIEDPHNLGAIIRTANLAGAH 125 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + +A +AK+++GA+ + P +++NL+ ++++ G + + + Sbjct: 126 GVIIPKNRAAGLTATVAKASAGAINYTPVAKVTNLSRTMEELKKEGLWFVCA-DMDGQVM 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G EG G+ ++ A + M G I +LN S AA V Y Sbjct: 185 YDLNLTGPIGLVIGNEGSGVGDLVRKHCDLFAAIPMAGEIDSLNASVAAGVLAYELVRQR 244 >gi|302544420|ref|ZP_07296762.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces hygroscopicus ATCC 53653] gi|302462038|gb|EFL25131.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces himastatinicus ATCC 53653] Length = 317 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 67/274 (24%), Positives = 114/274 (41%), Gaps = 13/274 (4%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQLLATKN 76 +AK R + ++ R ++ N + G + V AL + Q + Sbjct: 45 HAKQRIANARTRQAAKRPAPRRGGAKGTNELVVGRNPVVEALREGVPANTLYVQQFIDSD 104 Query: 77 ALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------- 128 R + P +D++ HQG+ L+ P + Sbjct: 105 DRVREGLKIAADRGGIHLMEAPKAELDRMTNGL-NHQGMVLQVPPYDYAHPEDLSAAAFD 163 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L++ LD V DP N+GA++RS AF G++ +R + +A K+++G P Sbjct: 164 DGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTP 223 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQET 247 R +NLT AL+ G +GL++D + L+ E + + +++G+EGKGL ET Sbjct: 224 VARATNLTRALESYQKAGLTVVGLAADGETELQDLEALDGPVVIVVGSEGKGLSRLVGET 283 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + MPG ++LN AA V LY + Sbjct: 284 CDFRVRIPMPGGAESLNAGVAAGVVLYEASRRRS 317 >gi|188995957|ref|YP_001930208.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium sp. YO3AOP1] gi|188931024|gb|ACD65654.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium sp. YO3AOP1] Length = 250 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 115/243 (47%), Gaps = 5/243 (2%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 +L ++G + V AL L+A + R + V+ V Q I++ Sbjct: 4 ENNNHLVIWGRNPVIEALKAGRSLEKILIAHDSHPPRELLELANEKKVKVQKVSRQKIEE 63 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSC 159 + + +AL + + + + ++++LDH+ DP N+G+ILR+A F Sbjct: 64 LANTKKTQGVVALVSPIKYYDENEIIDKTIKEKGIMLILDHITDPQNVGSILRTAEIFGV 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K S + V+ K+++GA+ H+P ++ +L + ++K G + + Sbjct: 124 SGVIIPKERSSPINEVVVKASTGAVFHLPIAKVGSLRNVIEKFKKKGGWVV-AIEKGGRN 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + IALI+G+EGKG+ E A +A + M G I +LNVSNA ++AL+ Sbjct: 183 IAEIDFPYPIALIVGSEGKGVSKSILEEADIIATIPMVGKITSLNVSNATSIALWELFKR 242 Query: 280 FAK 282 K Sbjct: 243 RIK 245 >gi|154492222|ref|ZP_02031848.1| hypothetical protein PARMER_01856 [Parabacteroides merdae ATCC 43184] gi|154087447|gb|EDN86492.1| hypothetical protein PARMER_01856 [Parabacteroides merdae ATCC 43184] Length = 249 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 106/244 (43%), Gaps = 11/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 EN ++G+ V A+ KI + L+R ++ PV+ VP + +D+ Sbjct: 2 KENEMVFGIRAVIEAIQADKEIDKILVKRELQGDLSRELFEVLKGRDIPVQRVPAERLDR 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ + L+ + +++LD V D N GAI R+ Sbjct: 62 LT--RKNHQGVIAFIPAITYERLENIIPFVYEQGKNPFIVLLDGVTDVRNFGAIARTCEC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D I+ R S + +A K+++GAL + + ++T+A++ + + G + S + Sbjct: 120 AGVDAIVIPSRGSVTVNADAIKTSAGALHVLSVCKEKSITEAIRFLQASGVKVYAASEKA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +A+++GAE G+ SM + G I +LNVS A+++ +Y Sbjct: 180 FENYTAIKYDGPVAIVMGAEDTGVSMDNLRICDSMVKIPQFGTIGSLNVSVASSILIYEV 239 Query: 277 QNHF 280 Sbjct: 240 VRQR 243 >gi|332969175|gb|EGK08207.1| TrmH family RNA methyltransferase [Kingella kingae ATCC 23330] Length = 302 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 63/286 (22%), Positives = 104/286 (36%), Gaps = 11/286 (3%) Query: 3 LISKK-----KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTV 57 +I L + + K + S+H + + L GVH + Sbjct: 22 IIQSSHKPTYPHPCPHVLHKMNPVIQSPQNNQLKHLAKLLSASKHRREHQQTVLEGVHLL 81 Query: 58 SAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 SA L+ + + A + V V + KI + +AL Sbjct: 82 SAYLDAGNTPEQVYVPEHRAQSPEIAALLCRLPANRVHLVSHNALRKISSLADANDIMAL 141 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 P SP + +VL+ + D N+GA+LRSA A II + + + + + Sbjct: 142 IALPQPSPLPEQGD----CVVLERIQDAGNVGAVLRSAAAAGIVHIILSDGCADAYAPKV 197 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 ++ GA + +LT + H T LS + L A I G E Sbjct: 198 LRAGMGAHFLLHIHERVDLTQWRSQYHDRVLVTA-LSEHNNFSLYDLTLQQPSAWIFGNE 256 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G G+ P+ Q AT+ + M G ++LN++ AA V L+ K Sbjct: 257 GSGVSPQIQNIATANVKIPMLGATESLNIAQAATVCLFEQMRQRLK 302 >gi|16125439|ref|NP_420003.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|221234182|ref|YP_002516618.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000] gi|13422511|gb|AAK23171.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|220963354|gb|ACL94710.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000] Length = 263 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 91/251 (36%), Gaps = 5/251 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDW 83 + K +++ + + + G+ V A++ + A + Sbjct: 11 NNTVKAVRALHMR-KEREDSGLFLAEGLKIVIEAIDCGHAPKIVMYGPDAADHPMLKKAV 69 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 A L V V + ++K+ ++ +A+ + ++ + + V D Sbjct: 70 AACLKAGGEVIEVNREILEKVSRRDNPQAVVAVFKQVFTPLSAIVPESAPCWVAMQAVRD 129 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A A C G+I S ++ G++ I + + + L Sbjct: 130 PGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRATMGSIF-AVKIAKATIPEFLAWRE 188 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 +W +G + + +++G E +GL P+ + M G +L Sbjct: 189 TWPGSVVGTLLTATVDHKSADYVKPSLILMGNEQQGLPPELAAACDVNVKIPMRGRADSL 248 Query: 264 NVSNAAAVALY 274 N+S A + +Y Sbjct: 249 NLSVATGIMIY 259 >gi|54310420|ref|YP_131440.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photobacterium profundum SS9] gi|52783294|sp|Q6LM40|RLMB_PHOPR RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|46914861|emb|CAG21638.1| putative RNA methyltransferase, TrmH family [Photobacterium profundum SS9] Length = 245 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 8/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 ++G+H V A L ++ ++ K+ RL ++ + +D Sbjct: 6 IFGIHAVKAVLATDPVRLIEVFVLKDRQDDRLMPLLTELKDLGITIQHAGRKALDDKAKG 65 Query: 108 EAVHQGLAL--ETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A L LD + + LL++LD V DPHN+GA LR+A A + Sbjct: 66 ASHQGIIARVKPAKQLNEHDLDTILEGSENPLLLILDGVTDPHNLGACLRNADAAGAVAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K + +A +K A GA E +P +R++NL ++ + G +G + ++ + Sbjct: 126 IIPKDRAAQLTATASKVACGAAEVMPLVRVTNLARTMRALQDKGVWIVGTAGEATHDIYH 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A+++GAEG+G+R T+ET + + M G + +LNVS A + L+ Sbjct: 186 SKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQR 243 >gi|325519163|gb|EGC98634.1| tRNA/rRNA methyltransferase [Burkholderia sp. TJI49] Length = 260 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 100/261 (38%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + H + L G H SA L+ + + AT+ ALA Sbjct: 2 KAITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGATPELCV-ATEGALA 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G L P + V S +++ Sbjct: 61 HAEAQAIVARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPAQPLPERVTQSSVVL-- 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +S GA + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVAP--- 175 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 S + + + +A + G EG G+ ++ A + PG Sbjct: 176 DALAARLDVPVALTDSHGAQAIYDCDLSGPVAWVFGNEGAGVSAFWRDAAAHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQVRQ 256 >gi|153814446|ref|ZP_01967114.1| hypothetical protein RUMTOR_00658 [Ruminococcus torques ATCC 27756] gi|317500160|ref|ZP_07958393.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|331087613|ref|ZP_08336541.1| RNA methyltransferase [Lachnospiraceae bacterium 3_1_46FAA] gi|145848842|gb|EDK25760.1| hypothetical protein RUMTOR_00658 [Ruminococcus torques ATCC 27756] gi|316898449|gb|EFV20487.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|330399792|gb|EGG79452.1| RNA methyltransferase [Lachnospiraceae bacterium 3_1_46FAA] Length = 258 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 106/245 (43%), Gaps = 11/245 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + L + G + V A + K+F L ++ R H + V + + Sbjct: 13 KEHTLVIEGRNAVLEAFRSGRTIDKLFVLDGCQDGPVRTIVREAKKHGTILNFVGKERLS 72 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ + HQG+ A +D + L+VLD + DPHN+GAI+R+A Sbjct: 73 QLT-QTGRHQGVIAYAAAYDYAEIDDMLKLAEKRGEDPFLIVLDGIEDPHNLGAIIRTAN 131 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 G+I KR + +A +AK+++GAL + P +++NL ++++ G + D Sbjct: 132 IAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLVKTMEELKEKGIWFVCADMD 191 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + I L++G EG G+ +E +A + M G I +LN S A V Y Sbjct: 192 GQSMYDMN-LTGPIGLVVGNEGDGVSRLVKENCDFVASIPMKGEITSLNASVAGGVLAYE 250 Query: 276 TQNHF 280 Sbjct: 251 IVRQR 255 >gi|328554485|gb|AEB24977.1| RNA methylase [Bacillus amyloliquefaciens TA208] Length = 248 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 97/277 (35%), Gaps = 30/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K++K+ K H + + + G H A Sbjct: 1 MKRIDSAKNQKVKDWKKLHTK-------------------KERLKTNTFLIEGEHLAEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + L+ ++A+ A+L P + + E + A+ Sbjct: 42 LKSKGTVKEILVKDESAIP-----ADLDMSIPCYVLSEDAFSAVTETETPQRIAAVC--- 93 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L+++D V DP N+G ++R+A A D ++ + S +SA Sbjct: 94 --HMPEEKPDPLKRLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGDGTADPYSGKTLRSA 151 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP ++ + + + ALI+G EG G+ Sbjct: 152 QGSHFHIPILKRPLDEFIDELKSQGVAIYGTALENGAVYQ-SVKPEESFALIVGNEGAGV 210 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + ++ + G ++LNV+ AAA+ +Y + Sbjct: 211 DAGLLQKTDLNLYVPLYGQAESLNVAVAAAILVYHLR 247 >gi|323126494|gb|ADX23791.1| putative tRNA/rRNA methyltransferase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 248 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 122/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +L+ K++ + + P +T+ ++ Sbjct: 10 NDIVYGVHAVTESLHANTGNKLYIQEDLRGKNVDNIKRLATEKKVSISWTPKKTLSEMT- 68 Query: 107 KEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD ++ L+++LD + DPHN+G+ILR+A A + Sbjct: 69 EGAVHQGFVLRVSAFAYTELDVILEKAEQEDNPLILILDGLTDPHNLGSILRTADATNVC 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V++K+++GA+EH+P R++NL+ L K+ + GF T G + Sbjct: 129 GVIIPKHRAVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDKLKAKGFWTFGTDMNGTPSH 188 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 189 RWNT-SGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247 >gi|190891338|ref|YP_001977880.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli CIAT 652] gi|190696617|gb|ACE90702.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli CIAT 652] Length = 296 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 145/267 (54%), Positives = 187/267 (70%), Gaps = 14/267 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQ----SFNQKSRHTSQPE---------NLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + + + R + ++LYG+HTV AA Sbjct: 16 SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRGAEDWKPPALAPDQVYLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP RK +L T+NALARL+ D P P + V P IDK++G EA+HQG+ LET P Sbjct: 76 LDNPERKKIKLSVTQNALARLEIDIE-PLGIPFEIVAPHEIDKVLGPEAIHQGVMLETRP 134 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKSA Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALE IPYI+I+NL DAL ++H GF TIGL S+ PLE DK+AL+LG+EGKGL Sbjct: 195 SGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKLALVLGSEGKGL 254 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267 R KT+ET T++A L MPG IK+LNVSN Sbjct: 255 RQKTRETVTALARLDMPGAIKSLNVSN 281 >gi|90414465|ref|ZP_01222441.1| putative RNA methyltransferase, TrmH family protein [Photobacterium profundum 3TCK] gi|90324470|gb|EAS41029.1| putative RNA methyltransferase, TrmH family protein [Photobacterium profundum 3TCK] Length = 245 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 109/239 (45%), Gaps = 10/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 ++G+H V A L ++ ++ K+ RL ++ + +D K Sbjct: 6 IFGIHAVKAVLATDPVRLIEVFVLKDRQDDRLMPLLTELKDLGITIQQAGRKALDDKA-K 64 Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ P + LL++LD V DPHN+GA LR+A A Sbjct: 65 GASHQGIIARVKPAKQLNEHDLDAILEGSENPLLLILDGVTDPHNLGACLRNADAAGAAA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + +A +K A GA E +P +R++NL ++ + G +G + ++ + Sbjct: 125 VIIPKDRAAQLTATASKVACGAAEVMPLVRVTNLARTMRALQDKGVWIVGTAGEATHDIY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A+++GAEG+G+R T+ET + + M G + +LNVS A + L+ Sbjct: 185 HSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQR 243 >gi|83720773|ref|YP_442566.1| RNA methyltransferase [Burkholderia thailandensis E264] gi|83654598|gb|ABC38661.1| RNA methyltransferase, TrmH family [Burkholderia thailandensis E264] Length = 281 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 58/264 (21%), Positives = 107/264 (40%), Gaps = 7/264 (2%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 DS A R++ YK++++ + + L G+H SA L+ + + T Sbjct: 18 DSMKAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCV-VTDG 76 Query: 77 ALARLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 AL+ + + P + V P + + GL L A + V N+ ++ Sbjct: 77 ALSHAEARETVARIEPARVVTLPDALFGQLSNVVNGVGLLLLVARPAPALPERVSNTSVV 136 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + D V D N+G+ILRSA A + + + S+ + +SA GA + + Sbjct: 137 L--DGVQDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDA 194 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 ++ S + + +A + G EG G+ + ++ AT + Sbjct: 195 GTLIE---RLAIPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRWRDAATHRVTIP 251 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 PG +++LNV+ AAAV L+ Sbjct: 252 QPGGMESLNVAAAAAVCLFEQCRQ 275 >gi|323495502|ref|ZP_08100576.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio sinaloensis DSM 21326] gi|323319383|gb|EGA72320.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio sinaloensis DSM 21326] Length = 245 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 116/242 (47%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K RL N ++ + +T+D Sbjct: 3 NEFIYGIHAVKAVLEREPERFIEAFVLKGRQDDRLMPILNELQVCGVSIQQMTRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQG+ P + A S LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-RGANHQGIMARVKPAKQLNENDLDDILAKHESPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S + +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSANITATVSKVACGAAEAVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ V L+ Sbjct: 182 DIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|301056070|ref|YP_003794281.1| 23S rRNA methyltransferase [Bacillus anthracis CI] gi|300378239|gb|ADK07143.1| 23S rRNA methyltransferase [Bacillus cereus biovar anthracis str. CI] Length = 254 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V Sbjct: 1 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEV 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 42 LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + + ++ + +S Sbjct: 97 ESEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 153 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 212 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248 >gi|330825418|ref|YP_004388721.1| TrmH family RNA methyltransferase [Alicycliphilus denitrificans K601] gi|329310790|gb|AEB85205.1| RNA methyltransferase, TrmH family, group 3 [Alicycliphilus denitrificans K601] Length = 248 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 109/242 (45%), Gaps = 11/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V L + I ++ ++A R + + K+ G Sbjct: 6 ILFGFHAVGVRLKTAPQSIIEVYYEATRRDARMRQFLARAKEAGVRLIEADGLRLAKLAG 65 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS--------QLLMVLDHVNDPHNIGAILRSAVAFS 158 A A +LD + + LL+VLD V DPHN+GA LR A Sbjct: 66 SHGHQGVAARVQAVAQLHSLDDLLDQLEADGVANPLLLVLDGVTDPHNLGACLRVADGAG 125 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K ++ SA +AK ASGA E +PY ++NL L ++ IG S D+ K Sbjct: 126 AHAVIAPKDHAVGISATVAKVASGAAETMPYFMVTNLARTLGELKERNIWVIGTSGDADK 185 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL+LGAEG G+R T++T + + M G +++LNVS A+AV LY Sbjct: 186 TLYQVDLKGPVALVLGAEGPGMRQLTRKTCDELVSIPMKGAVESLNVSVASAVCLYEALR 245 Query: 279 HF 280 Sbjct: 246 QR 247 >gi|298373202|ref|ZP_06983192.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral taxon 274 str. F0058] gi|298276106|gb|EFI17657.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral taxon 274 str. F0058] Length = 248 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 61/249 (24%), Positives = 110/249 (44%), Gaps = 14/249 (5%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPP 98 + + ++G+H++ A+ R I ++ ++ L + + + P + VP Sbjct: 3 KRVKENKM-IFGLHSIIEAIEAG-RDIEKIYLKRDFGGELVKTLFAKIKTYGIPCRKVPV 60 Query: 99 QTIDKIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 + ++ E HQG A + PTL + L++ LD V D N GAI Sbjct: 61 EKLNSFT--EKNHQGAVAFVAEISYSNISDIIPTLYEAGKTPLIVALDGVTDIRNFGAIS 118 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+ D I+ S + +A K+++GAL ++P R NL A++ + + GF I Sbjct: 119 RTCECAGVDAILLPSYCSATINADAVKTSAGALHYLPVCRTDNLCQAIKFLKNSGFTIIA 178 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 LS + + + L+LGAE +G+ + S + + G I++LNVS AA + Sbjct: 179 LSEKANIAYTDQDYSSPTVLVLGAEDRGISSEVLSLCDSKVKIPVLGKIESLNVSVAAGI 238 Query: 272 ALYITQNHF 280 +Y Sbjct: 239 VIYEAVKSR 247 >gi|327191383|gb|EGE58409.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli CNPAF512] Length = 296 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 144/267 (53%), Positives = 186/267 (69%), Gaps = 14/267 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQ----SFNQKSRHTSQPE---------NLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + + + R + ++LYG+HTV AA Sbjct: 16 SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRGAEDWKPPALAPDQVYLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP RK +L T+NALARL+ D P + V P IDK++G EA+HQG+ LET P Sbjct: 76 LDNPERKKIKLSVTQNALARLEIDVEAL-DIPFEIVAPHEIDKVLGPEAIHQGVMLETRP 134 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKSA Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALE IPYI+I+NL DAL ++H GF TIGL S+ PLE DK+AL+LG+EGKGL Sbjct: 195 SGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKLALVLGSEGKGL 254 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267 R KT+ET T++A L MPG IK+LNVSN Sbjct: 255 RQKTRETVTALARLDMPGAIKSLNVSN 281 >gi|304312001|ref|YP_003811599.1| 23s rrna (guanosine-2\'-o-)-methyltransferase [gamma proteobacterium HdN1] gi|301797734|emb|CBL45956.1| 23s rrna (guanosine-2\'-o-)-methyltransferase [gamma proteobacterium HdN1] Length = 248 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 119/247 (48%), Gaps = 11/247 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102 + +LYG+H+VSA L ++ +L ++ H + +P +T+D Sbjct: 2 SKQDWLYGIHSVSAILERHPDRVLELFIVETREDKRIGDIIKLAKTHGLRAQFIPKKTMD 61 Query: 103 KIVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + + AVHQG+A+ L ++ L+ LD + DPHN+GA LRSA Sbjct: 62 HQLEEGAVHQGVAIRYRPSAPGDENDLKHLVENANAPLFLLFLDGITDPHNLGACLRSAD 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSS 214 A +ITT+ S SA + K A GA E +P+I+++NL L+ + + S Sbjct: 122 AAGVHAVITTRDKSAGLSAAVRKVAVGAAETVPFIQVTNLARTLEMVRQQGVWVYGTALS 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K + + I +++GAEG GLR TQ+ + ++ M G +++LNVS A V L+ Sbjct: 182 EGAKTIYETDLRGNIGIVMGAEGVGLRRLTQDCCDGLVYIPMAGTVQSLNVSVATGVCLF 241 Query: 275 ITQNHFA 281 + Sbjct: 242 EALRQRS 248 >gi|266623924|ref|ZP_06116859.1| RNA methyltransferase, TrmH family, group 3 [Clostridium hathewayi DSM 13479] gi|288864256|gb|EFC96554.1| RNA methyltransferase, TrmH family, group 3 [Clostridium hathewayi DSM 13479] Length = 250 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 105/243 (43%), Gaps = 9/243 (3%) Query: 46 PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 E + G + V A K++ K+ + V V + +++ Sbjct: 7 TEEFIIEGRNAVLEAFRAGKTIDKLYVQEGIKDGPVQSIIREAKKQDTIVNFVSRERLNQ 66 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAF 157 + + +A A + D ++ + +LD + DPHN+GAI+R+A Sbjct: 67 MSQEGRHQGVIAHAAAYEYAEVEDILKAAEEKGEPPFIFLLDGIEDPHNLGAIIRTANLA 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR + +AV+AK+++GAL + P +++NL ++++ G + + Sbjct: 127 GAHGVIIPKRRASGLTAVVAKTSAGALNYTPVAKVTNLAATIEELKEKGLWFVCA-DMNG 185 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + I L++G+EG G+ +E +A + M G I +LN S AA V Y Sbjct: 186 ELMYRLNLKGPIGLVIGSEGDGVGRLVREKCDMVASIPMKGDIDSLNASVAAGVLAYEIV 245 Query: 278 NHF 280 Sbjct: 246 RQR 248 >gi|323342430|ref|ZP_08082662.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463542|gb|EFY08736.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Erysipelothrix rhusiopathiae ATCC 19414] Length = 236 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 106/236 (44%), Gaps = 7/236 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +++G +TV+A L + + L + V+ V +DK+ Sbjct: 4 YIFGKNTVTAYLKSGQKPKN-LYLFNKGNYQEIVALAKEQGIRVQFVDKFRLDKMAD--G 60 Query: 110 VHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 VHQG+ +E +L + + L+++ D + DPHN+GAILR+ A DG++ K Sbjct: 61 VHQGVVIEIQDYKYHSLQEIIKGAKNNLIVLCDQLEDPHNLGAILRTCDACGVDGVVVGK 120 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIK 225 S ++ +AK ++GA+ + +N+ A+ + + + ++ + Sbjct: 121 HRSVGLTSTVAKVSTGAINTVKVAEATNMVKAIAELKEAGYWVVAAENAVDAVDYTEFNV 180 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + L++G+EGKG+ ++ + + M G + +LNVS A V L+ Sbjct: 181 DMPLVLVVGSEGKGISRLVKKECDILTTIPMQGSVNSLNVSVATGVLLFDIVRRRK 236 >gi|220930947|ref|YP_002507855.1| RNA methyltransferase [Halothermothrix orenii H 168] gi|219992257|gb|ACL68860.1| RNA methyltransferase [Halothermothrix orenii H 168] Length = 244 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 104/240 (43%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGK 107 + G + V A+ + R I ++ + + P++ +DK Sbjct: 4 IEGRNPVIEAIKSG-RTIKKIFIQEGVRGKKVDRIIKEASRFNIPLQKAKKDFLDKKARS 62 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+ + + + +++LD V DPHN+GAI+R+A A Sbjct: 63 HS-HQGIIAMADDIKYVSPREMVEIAREKGEDPFIIILDQVQDPHNLGAIIRTAYAAGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I ++ S + V+ K+++GA+ H+P ++SN+ + + G G +P Sbjct: 122 GLIYPRKRSADITPVVTKASAGAVNHLPLAKVSNINYTIADLKDMGLWITGTDVRGTRPY 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L++G EGKG+R +E + ++ M G + +LN S AA V ++ Sbjct: 182 YSADYKGPVGLVIGNEGKGMRRLVKENCDFVVNIPMSGELGSLNASVAAGVVIFEVVRQR 241 >gi|299541908|ref|ZP_07052231.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus fusiformis ZC1] gi|298725646|gb|EFI66287.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus fusiformis ZC1] Length = 250 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 116/245 (47%), Gaps = 11/245 (4%) Query: 45 QPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + + G + V AL + K++ K + D V+ VP + +D Sbjct: 3 EQNGEIIAGKNPVLEALRSGRDMNKVWIAEGVKKSGVNELLDLARERGVIVQFVPKKKVD 62 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ A HQG+ A L+ + ++LD + DPHN+G+I+R+A Sbjct: 63 QLSS--ANHQGIVASVAAYKYAELEDLFAAAANKQEDPFFLILDELEDPHNLGSIMRTAD 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GII KR S S +AV+AK+++GA+EH+P +R++NL + ++ G G + Sbjct: 121 AIGAHGIIIPKRRSVSLTAVVAKASTGAIEHVPVVRVNNLAQTIDELKERGIWIAGTDAK 180 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + +A+I+G+EGKG+ +E + HL M G + +LN S AAA+ +Y Sbjct: 181 GSADYRKMDATLPLAIIIGSEGKGMGRLLKEKCDFLYHLPMVGHVTSLNASVAAALLMYE 240 Query: 276 TQNHF 280 Sbjct: 241 VYRKR 245 >gi|318058499|ref|ZP_07977222.1| RNA methyltransferase [Streptomyces sp. SA3_actG] gi|318079335|ref|ZP_07986667.1| RNA methyltransferase [Streptomyces sp. SA3_actF] Length = 314 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 67/281 (23%), Positives = 119/281 (42%), Gaps = 15/281 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK---IFQ 70 + H K R + K+ Q ++ + + + G + V AL + Q Sbjct: 36 EARKGHV-KNRLANAKVKQTQR-RTAAKSRGKSSSELVVGRNPVFEALRDGVPATALYVQ 93 Query: 71 LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 + R + P +D++ HQGL L+ P + + Sbjct: 94 QFIDNDERVRDALKLAADRGGIHLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDL 152 Query: 130 R-------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + L++ LD V DP N+GAI+RS AF G++ +R + +A KS++G Sbjct: 153 PAAAYDEGDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAG 212 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241 P R++NLT AL+ G +GL++D + + + + + +++G+EGKGL Sbjct: 213 TAARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTVGELAALDGPVVIVIGSEGKGLS 272 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ET + MPG ++LN AA + +Y + A+ Sbjct: 273 RLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRAR 313 >gi|222085654|ref|YP_002544184.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84] gi|221723102|gb|ACM26258.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84] Length = 302 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 142/269 (52%), Positives = 183/269 (68%), Gaps = 14/269 (5%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ---------PENLFLYGVHTVS 58 S KD+HYA LRR HRD K+ + QK + P+ ++LYG+HTV Sbjct: 19 KSAKDTHYATLRRAHRDAKRERGEIPTPVPQKRKRPGADDWKPPALAPDQVYLYGLHTVR 78 Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 AAL NP RK +L T+NAL RL+ P + V PQ IDK++G EA+HQG+ LET Sbjct: 79 AALANPERKNIKLSTTQNALVRLEIGPVDALGIPFEIVSPQDIDKVLGPEAIHQGVMLET 138 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 PL L+A+++S LL+VLD V DPHN+GAI+RSAVAF +ITT+R+SP+ES VLAK Sbjct: 139 RPLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFDAAAVITTQRHSPTESGVLAK 198 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 SASGALE IPYI+I+NL DAL ++H GF +IGL S+ PLE +K+AL+LG+EGK Sbjct: 199 SASGALELIPYIQITNLADALGELHRLGFVSIGLDSEGPAPLEGTFSGEKVALVLGSEGK 258 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSN 267 GLR KT+ET ++A L MPG IK+LNVSN Sbjct: 259 GLRQKTRETVNALARLDMPGAIKSLNVSN 287 >gi|149011685|ref|ZP_01832881.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP19-BS75] gi|147764116|gb|EDK71048.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP19-BS75] gi|301794481|emb|CBW36920.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae INV104] gi|332203287|gb|EGJ17355.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA47901] Length = 242 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFLNR 241 >gi|329850767|ref|ZP_08265612.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] gi|328841082|gb|EGF90653.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] Length = 263 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 93/269 (34%), Gaps = 12/269 (4%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I S+ ++ K +++ + + + + G+ + AL+ + + Sbjct: 2 IKSVTSLT-------NQTVKDIRALHMR-KEREETGRFLAEGLKIIIDALDQGFAPLILV 53 Query: 72 LATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 + + A L V V + ++KI K+ +A+ + S Sbjct: 54 FGKSDDRHPMLERAIRETLAVEGEVLEVTREILEKISRKDNPQMVVAVFAQQVKSLADID 113 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 ++ + + L+ + DP N+G I+R+A A G+I S ++ G++ Sbjct: 114 PNSNAVWVALEQIRDPGNLGTIIRTADAAGIGGVILIGDCVDPFSVETVRATMGSVF-AL 172 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + L W +G + +++G E GL P Sbjct: 173 PVVKCTREAFLADRSRWTGSVVGTLLTATHNHRTADYRRPTLILMGTEQSGLTPDIAAAC 232 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + M G +LN+S A + +Y Sbjct: 233 DTHVKIPMRGRADSLNLSVATGIMIYAAA 261 >gi|160893095|ref|ZP_02073883.1| hypothetical protein CLOL250_00641 [Clostridium sp. L2-50] gi|156865178|gb|EDO58609.1| hypothetical protein CLOL250_00641 [Clostridium sp. L2-50] Length = 268 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 100/289 (34%), Gaps = 31/289 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ + KI K + N+ + + + + G+ Sbjct: 1 MEIITANSNPKI------------------KNINKLNKNASFRKEEQVFIVEGIRMFREL 42 Query: 61 LNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-- 114 P ++ Q+ ++ A R L + V + + L Sbjct: 43 ---PVDRVKQVFVSETAYQRYGTELPEKGITEQDRRLVVVSDSVFRSMSQTKTPQGLLAV 99 Query: 115 ---ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 T L +D N +VL+ + DP N+G I+R+A A GII Sbjct: 100 VERYHYTMEDLISVMDKRENGNTFLVLESIQDPGNLGTIVRTAEAADVTGIIIGGDSCDI 159 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + + +S G + +P++ + + A+ ++ G G D L A Sbjct: 160 YNPKVVRSTMGTIFRVPFVYVDDPAKAVDRLKEHGIVVYGAHLD-GCDLYAGKLKRNNAF 218 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++G EG GL + A + + M G +++LN + +A + Y Sbjct: 219 LIGNEGNGLTDELSSKADRLLRIPMAGQVESLNAAISATLLAYEAYRQR 267 >gi|119898184|ref|YP_933397.1| RNA methyltransferase [Azoarcus sp. BH72] gi|119670597|emb|CAL94510.1| RNA methyltransferase [Azoarcus sp. BH72] Length = 263 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 61/261 (23%), Positives = 106/261 (40%), Gaps = 9/261 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ K + +R + G H + AAL+ + +L+ +++ AR + Sbjct: 6 SRDNPAVKHLHGLAHNARDRRKAGETLFDGPHLIGAALDAGW-PLKRLVVSESGYARAEI 64 Query: 84 DANLPHP---FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 + L P + + + + LA+ P +P A + L+VLD Sbjct: 65 RSLLERAPATIPALKLDDSLVAHVSPVDTPTGILAVADIPPAAPAPAAGAS---LVVLDG 121 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G ILR+A A + ++ T + S ++ GA H+ ++L L Sbjct: 122 VQDPGNLGTILRTAAAAGVEDVVLTGGCAQPWSPRTLRAGMGAHFHLRIHECTDLAGLLA 181 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 K L + +A + GAEG+GL + AT + M I Sbjct: 182 TYPGAVL--ATALDARAKSLYETDLRGPVAWLFGAEGQGLSEAAKALATGTVLIPMAAGI 239 Query: 261 KALNVSNAAAVALYITQNHFA 281 ++LNV+ AAAV L+ + A Sbjct: 240 ESLNVAAAAAVCLFEQRRQRA 260 >gi|209547650|ref|YP_002279567.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533406|gb|ACI53341.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 286 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 95/258 (36%), Gaps = 6/258 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K +++ K + + G+ V A+ I L+ K A + + Sbjct: 24 NPIIKDIKALTNK-KSREESGTFLAEGLKLVIDAIELGWT-IRTLVYAKAAKGKPLVEQM 81 Query: 87 LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 V V + I I ++ + + + R+ + + LD V Sbjct: 82 AARTVASGGLVLEVSEKVIASITRRDNPQMVVGIFEQRWMPLRDIRPRDGETWVALDRVR 141 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+A A GII + S ++ G++ +P R + + Sbjct: 142 DPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAVPVARAAPEEFIAWRK 201 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + + + + + + L++G E GL + A ++A + G + Sbjct: 202 SAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPDQLAGQADALARIPQQGRADS 261 Query: 263 LNVSNAAAVALYITQNHF 280 LN++ A AV L+ + H Sbjct: 262 LNLAVATAVMLFEARRHL 279 >gi|116492486|ref|YP_804221.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745] gi|116102636|gb|ABJ67779.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745] Length = 255 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 101/274 (36%), Gaps = 23/274 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS K+ K+ KL+ N+ + + L G H V A Sbjct: 1 MEKISSTKNSKVKEW-----VKLKTNN--------------GRKKFKKFLLEGRHPVETA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + F ++ L L + V + + + QG+ L Sbjct: 42 LEQATEYEFLIVQEDFDLGELAEQVDNDKLILVT----KEVANHISDTVHDQGIFLIGYI 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 S +VLD+V DP NIG ++R+A A G++ + + + ++ Sbjct: 98 NEEDWQFPDDLSGKWLVLDNVQDPGNIGTMVRTADAAGFTGVVFGDGTADFYNPKILRAM 157 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+ R++ + ++ + + D+ +LI+G EG G+ Sbjct: 158 QGSQYHLQLKRLNLEKWIRNCKDQGSVIFGSILDENARDYRKIDVPDQFSLIMGNEGNGM 217 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E ++ + G ++LNV+ AA V ++ Sbjct: 218 SERLIEMTDMNLYIPIKGSAESLNVAVAAGVLMF 251 >gi|197334845|ref|YP_002157109.1| RNA methyltransferase, TrmH family, group 3 [Vibrio fischeri MJ11] gi|197316335|gb|ACH65782.1| RNA methyltransferase, TrmH family, group 3 [Vibrio fischeri MJ11] Length = 247 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 N +++G+H A L + ++ K RL N F ++ +P +T+D Sbjct: 3 NDYIFGIHAAKAVLERDPARFIEVFVLKGRQDDRLLPILNELTQLGFKIQELPRKTLDDK 62 Query: 105 VGKEAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K A HQG+ + + ++ LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-KGANHQGIIARVTPAKQLNEHDLDDIVSQTDNPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSASMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DVFQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HFA 281 A Sbjct: 242 QRA 244 >gi|220924093|ref|YP_002499395.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS 2060] gi|219948700|gb|ACL59092.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS 2060] Length = 259 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 113/257 (43%), Positives = 158/257 (61%), Gaps = 1/257 (0%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +R ++ +S + + + + LYG H V+ AL NP R + +LLAT+NALARL Sbjct: 4 KRTAPRDRRHRSGADRRAAPAGDDRIILYGWHPVTEALRNPGRGLHRLLATENALARLAA 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + P + V P I +VG +AVHQGL LE PL +P D + +L+ LD + D Sbjct: 64 ELGELRIVP-QMVRPGEISALVGPDAVHQGLYLEAEPLRAPAFDTLPPDAVLLALDQITD 122 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GAI+R+A AF+ I+TT R+SP+ + VLAKSASG LEH+P++ + NL +AL + Sbjct: 123 PHNVGAIVRTAAAFNVTAIVTTARHSPAATGVLAKSASGGLEHVPFVTVRNLAEALIDLG 182 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 GF IGL S++ PL+Q + ++LGAEGKGLR +T+E MA L PG IK+L Sbjct: 183 ERGFTRIGLDSEAPVPLDQVTPAPPLVIVLGAEGKGLRQRTRECCDVMARLDFPGAIKSL 242 Query: 264 NVSNAAAVALYITQNHF 280 NVSNAAA+ LY Sbjct: 243 NVSNAAAITLYALAPRR 259 >gi|169830056|ref|YP_001700214.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus sphaericus C3-41] gi|168994544|gb|ACA42084.1| Putative trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus sphaericus C3-41] Length = 250 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 116/245 (47%), Gaps = 11/245 (4%) Query: 45 QPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + + G + V AL + K++ K + D V+ VP + +D Sbjct: 3 EQNGEIIAGKNPVLEALRSGRDMNKVWIAEGVKKSGVNELLDLARERGVIVQFVPKKKVD 62 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ A HQG+ A L+ + ++LD + DPHN+G+I+R+A Sbjct: 63 QLSS--ANHQGIVASVAAYKYAELEDLFAAAAKKQEDPFFLILDELEDPHNLGSIMRTAD 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GII KR S S +AV+AKS++GA+EH+P +R++NL + ++ G G + Sbjct: 121 AIGAHGIIIPKRRSVSLTAVVAKSSTGAIEHVPVVRVNNLAQTVDELKERGIWIAGTDAK 180 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + +A+I+G+EGKG+ +E + HL M G + +LN S AAA+ +Y Sbjct: 181 GSVDYRKMDATLPLAIIIGSEGKGMGRLLKEKCDFLYHLPMVGHVTSLNASVAAALLMYE 240 Query: 276 TQNHF 280 Sbjct: 241 VYRKR 245 >gi|160937869|ref|ZP_02085227.1| hypothetical protein CLOBOL_02761 [Clostridium bolteae ATCC BAA-613] gi|158439095|gb|EDP16849.1| hypothetical protein CLOBOL_02761 [Clostridium bolteae ATCC BAA-613] Length = 247 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K+F L ++ R + + VP + +D+I Sbjct: 8 IEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVRTILREARKYDTIINYVPKERLDQISETG 67 Query: 109 AVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A A + D ++ L++LD + DPHN+GAI+R+A G+ Sbjct: 68 KHQGVIAYAAAYEYAEVEDMLKAAEEKGEPPFLILLDGIEDPHNLGAIIRTANLAGAHGV 127 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I KR + +A +AK+++GAL + P +++NLT ++ + G + + + Sbjct: 128 IIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLTATMEDLKKKGMWFVCADMGGELMYKM 187 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 188 N-LKGSIGLVVGNEGEGVGKLVREHCDMVASIPMKGDIDSLNASVAAGVLAYEIVRQR 244 >gi|145629932|ref|ZP_01785714.1| hypothetical protein CGSHi22421_07773 [Haemophilus influenzae R3021] gi|144984213|gb|EDJ91636.1| hypothetical protein CGSHi22421_07773 [Haemophilus influenzae R3021] Length = 246 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L + ++ ++ K RL N + V+ V QT+DK Sbjct: 5 IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ + + + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGVIARVQAAKELNENDLDEILSNKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL+ + +G + ++ + + Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAEIVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|91788889|ref|YP_549841.1| RNA methyltransferase TrmH [Polaromonas sp. JS666] gi|91698114|gb|ABE44943.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polaromonas sp. JS666] Length = 264 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 72/244 (29%), Positives = 111/244 (45%), Gaps = 13/244 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V L + + ++ ++A R D + + K+ G Sbjct: 22 VLFGFHAVGVRLKTAPQSVLEVFFDASRRDARMRQFTDRAREAGVRLIESDGLRLAKMCG 81 Query: 107 KEAVHQGLALETA---------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+ LL +A LL+VLD V DPHN+GA LR A Sbjct: 82 SHG-HQGVVARVDAVAQVKSLDELLEQLEEAGTAQPLLLVLDGVTDPHNLGACLRVADGA 140 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG S D+ Sbjct: 141 GAHAVIAPKDHAAGINATVAKVASGAAETMPYFMVTNLARTLGELKERNIWCIGTSDDAP 200 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K + +AL+LGAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 201 KTIYDVDLKGPVALVLGAEGEGMRQLTRKTCDELVSIPMRGAVESLNVSVASGVCLYEAL 260 Query: 278 NHFA 281 + Sbjct: 261 RQRS 264 >gi|260912878|ref|ZP_05919364.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pasteurella dagmatis ATCC 43325] gi|260633256|gb|EEX51421.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pasteurella dagmatis ATCC 43325] Length = 245 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 109/239 (45%), Gaps = 9/239 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H VSA LN ++ ++ K RL N H V+ V QT+DK Sbjct: 5 IYGIHAVSAFLNTAPERLIEVYVLKGREDKRLQPLLNELHRLGISVQFVNRQTLDKKADG 64 Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E +A D + S LL+VLD V DPHN+GA LR+A A + Sbjct: 65 EVHQGIIARIQPAKELNEADLDAILKNKQSPLLLVLDGVTDPHNLGACLRTADAAGVCAV 124 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221 I K S S++ K A GA E IP IR++NL L+ + + + ++ Sbjct: 125 IVPKDKSAQLSSIARKVACGAAEVIPLIRVTNLARTLRDLQNEHNIWVVGTAGEATETLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 185 QAKLTGGLALVMGAEGDGMRRLTRENCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|330686272|gb|EGG97884.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis VCU121] Length = 248 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E++ + G H V A+ + KI K V+TVP +D + Sbjct: 2 EDIVIVGRHAVKEAIISGHSINKILIQDGIKKQQINDILKNAKDQKLIVQTVPKSKLDFL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 62 S--TAPHQGVAALVAPYEYADFDQFLKQQQEKDGLSTVIILDGLEDPHNLGSILRTADAS 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S S + +AK+++GA++H+P IR++NL + ++ + GF G +++ Sbjct: 120 GVDGVIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTNLAKTIDELKNNGFWVAGTEANNA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 180 TDYRDLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239 Query: 278 NHF 280 Sbjct: 240 RKR 242 >gi|229496145|ref|ZP_04389865.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas endodontalis ATCC 35406] gi|229316723|gb|EEN82636.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas endodontalis ATCC 35406] Length = 246 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 11/239 (4%) Query: 50 FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++G+H+V AL KI+ A + R PV VP + +++ Sbjct: 6 IIFGIHSVQEALEAGQEIDKIYLRRALVSEEIRAIKRLAREQRIPVLEVPAERLNRFT-- 63 Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG A + L+ L+++L+ V D N GAI RSA Sbjct: 64 RGAHQGCVAIIAQVSYTPLEMLVPQIFERGEDPLIVLLNGVTDTRNFGAIARSAECAGAH 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ +R S S SA +++GAL IP R+ +++ A+ + G Q + + ++ Sbjct: 124 ALVIAERGSVSVSADAVNASAGALMRIPVCRVPSISGAVGYLAECGLQIVVANEKAENTY 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +AL++G+E +G+ P+ AT + G I +LNVS AA + L+ + Sbjct: 184 YTADLTGPLALVMGSEHEGVSPQVARLATLSVAIPQVGEIGSLNVSVAAGILLFESLRQ 242 >gi|86356050|ref|YP_467942.1| rRNA methylase [Rhizobium etli CFN 42] gi|86280152|gb|ABC89215.1| rRNA methylase protein, TrmH family [Rhizobium etli CFN 42] Length = 286 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 92/258 (35%), Gaps = 6/258 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K +++ K + + G+ V A+ I L+ K A + + Sbjct: 24 NPIIKDIKALTNK-KSREESGTFLAEGLKLVIDAIELGWT-IRTLVYAKAAKGKPLVEQM 81 Query: 87 LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 V V + I I ++ + + + + + LD V Sbjct: 82 AARTVASGGLVLEVSEKVIAAITRRDNPQMVVGIFEQRWAPLKGIRPQEGETWVALDRVR 141 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+A A GII + S ++ G++ +P R + + Sbjct: 142 DPGNLGTIIRTADAAGASGIILIGETTDPFSLETVRATMGSVFAVPVARATPEEFLAWRK 201 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + + + + + L++G E GL + A ++A + G + Sbjct: 202 SAGVSIVATHLAGAVDYRTIDYRKKPTVLLMGNEQSGLPDQLAREADALARIPQQGRADS 261 Query: 263 LNVSNAAAVALYITQNHF 280 LN++ A AV L+ + H Sbjct: 262 LNLAVATAVMLFEARRHL 279 >gi|146296390|ref|YP_001180161.1| RNA methyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409966|gb|ABP66970.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 253 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL N S +I ++ TK+ + VK V IDK+ K Sbjct: 4 IEGKNPVKEAL-NSSTQITEVYISNTTKDKSISEIINLCKQKGIVVKFVDKSKIDKMS-K 61 Query: 108 EAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+ +D L++LD + DPHN G+I+RSA Sbjct: 62 TKNPQGVIAIAQEYKYWDIDDLLLEAANKGEKPFLVLLDEITDPHNFGSIIRSAHLCGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GIIT R S + + K+++GA+EHI R+ NL + + G ++++K + Sbjct: 122 GIITEARNSCPITPTVEKASAGAIEHIKVARVVNLRRTIDSLKEKGVWVYAADNNAEKFV 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I +I+G+EGKG+ +E A + + G I + N S AA + + Sbjct: 182 YDCDFKIPICIIIGSEGKGISRLVKEGADFLVKIPQKGKINSYNASVAAGIIFFEVLKQR 241 >gi|55820190|ref|YP_138632.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMG 18311] gi|55822078|ref|YP_140519.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus CNRZ1066] gi|116627048|ref|YP_819667.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMD-9] gi|55736175|gb|AAV59817.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMG 18311] gi|55738063|gb|AAV61704.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus CNRZ1066] gi|116100325|gb|ABJ65471.1| rRNA methylase [Streptococcus thermophilus LMD-9] gi|312277511|gb|ADQ62168.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus thermophilus ND03] Length = 247 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 9/247 (3%) Query: 41 RHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 + T + +YGVH V+ +L K++ + + P + Sbjct: 2 KTTKESILDIVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAEKKVSISWTPKK 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRS 153 T+ + G AVHQG L + L + L+++LD +NDPHN G+ILR+ Sbjct: 62 TLSDMTG-GAVHQGFVLRVSEFAYSDLSVIMDKAEQEENPLILILDGLNDPHNFGSILRT 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I K + + V+AK+++GA+EHIP R++NL+ L K+ GF G Sbjct: 121 ADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWVFGTD 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV + Sbjct: 181 MDGTASHKWNTA-GKLALIIGNEGKGISANIKKQVDEMITIPMGGHVQSLNASVAAAVLM 239 Query: 274 YITQNHF 280 Y + Sbjct: 240 YEVYRNR 246 >gi|288904447|ref|YP_003429668.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus UCN34] gi|306830480|ref|ZP_07463650.1| RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977443|ref|YP_004287159.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731172|emb|CBI12720.1| putative RNA methyltransferase, TrmH family [Streptococcus gallolyticus UCN34] gi|304427505|gb|EFM30607.1| RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177371|emb|CBZ47415.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 249 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 121/247 (48%), Gaps = 10/247 (4%) Query: 41 RHTS-QPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 ++ N +YGVH V+ +L N K++ + + + P Sbjct: 2 KNREFNETNDIVYGVHAVTESLTANTGNKLYIQDDLRGKNVDKIKNLAAEKKVSISWTPK 61 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILR 152 +T+ + AVHQG L + LD + L+++LD +NDPHN G+ILR Sbjct: 62 KTLSDMT-NGAVHQGFVLRVSEFAYAELDTILDKAAQEENPLILILDGLNDPHNFGSILR 120 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A + G+I K + + V+AK+++GA+EH+P R++NL+ L K+ GF G Sbjct: 121 TADATNVTGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEQGFWVFGT 180 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV Sbjct: 181 DMNGTPSHKWNT-SGKLALIIGNEGKGISQNIKKQVDEMITIPMNGHVQSLNASVAAAVL 239 Query: 273 LYITQNH 279 +Y H Sbjct: 240 MYEVFRH 246 >gi|264679078|ref|YP_003278985.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni CNB-2] gi|299533339|ref|ZP_07046722.1| RNA methyltransferase [Comamonas testosteroni S44] gi|262209591|gb|ACY33689.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni CNB-2] gi|298718655|gb|EFI59629.1| RNA methyltransferase [Comamonas testosteroni S44] Length = 256 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 111/242 (45%), Gaps = 11/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V L + I ++ ++A R + + + K+ G Sbjct: 6 VLFGFHAVGVRLKTAPQSIIEVYFEASRRDARMRQFLERAKEAGVRLIEADALRLAKLAG 65 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS--------QLLMVLDHVNDPHNIGAILRSAVAFS 158 A + TLD + + LL+VLD V DPHN+GA LR A Sbjct: 66 SHGHQGVAARVEEVKDTRTLDELLDDLEEEGVKAPLLLVLDGVTDPHNLGACLRVADGAG 125 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K ++ +A +AK ASGA E +PY ++NL L+++ G IG S D+ K Sbjct: 126 VHAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTLKELKERGIWIIGTSGDADK 185 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q AL+LGAEG G+R T++T ++ + M G +++LNVS A+ V LY Sbjct: 186 HLYQMDLTGPTALVLGAEGDGMRQLTRKTCDALVSIPMQGAVESLNVSVASGVCLYEALR 245 Query: 279 HF 280 Sbjct: 246 QR 247 >gi|294789060|ref|ZP_06754300.1| RNA methyltransferase, TrmH family, group 3 [Simonsiella muelleri ATCC 29453] gi|294483162|gb|EFG30849.1| RNA methyltransferase, TrmH family, group 3 [Simonsiella muelleri ATCC 29453] Length = 249 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 112/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H ++A L ++ I +L +N R + V ++ + Sbjct: 6 LIYGFHAINARLWQNAKSIIELYILENKNDVRTREVLEKAAQENVRVHFADTDRLNAMA- 64 Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K A HQG+ L LD +R L+VLD + DPHN+GA LR+A A Sbjct: 65 KGARHQGVVGFIDASKNHVHLEDVLDNLREPAFLLVLDGITDPHNLGACLRTADAMGVHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S +A ++K A GA E +PYI ++NL L+++ +G +G + L Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMGGEADLF 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A ++G EG G+R T+E ++ + M G ++++N+S +A + L T+ Sbjct: 185 HYDIPQAVAWVMGNEGAGMRRLTREHCDALVSIPMFGTVQSMNISVSAGMVLAETRRQR 243 >gi|171318091|ref|ZP_02907260.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MEX-5] gi|171096715|gb|EDT41600.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MEX-5] Length = 260 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 101/257 (39%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ YK++++ + + L G H A L+ + + AT+ ALA + Sbjct: 6 SRDNPLYKRLKALAGSTSQQRRGGQALLEGFHLAGAYLDTGATPELCV-ATEGALAHAEA 64 Query: 84 DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A + + V P + + G L P + V ++ +++ D V Sbjct: 65 QAIIARIDAQRVVTLPDALFGQLSNVVNGVGFLLLVERPAQPLPERVTHTSVVL--DGVQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA A + + + S+ + +S GA + ++ Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDALAGRL 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 T + + + +A + G EG G+ ++ AT + PG +++ Sbjct: 183 DVPVALTDSHGAQAVYDCD---LAGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ AAAV L+ Sbjct: 240 LNVAAAAAVCLFEQVRQ 256 >gi|206559920|ref|YP_002230684.1| putative tRNA/rRNA methyltransferase [Burkholderia cenocepacia J2315] gi|198035961|emb|CAR51853.1| putative tRNA/rRNA methyltransferase [Burkholderia cenocepacia J2315] Length = 247 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 117/239 (48%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + + + ++L + + + A + + + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQEFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + S LD + LL+VLD V DPHN+GA LR A + Sbjct: 66 TER-HQGVVARVEDMPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S ++ L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEAPATLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|121997455|ref|YP_001002242.1| RNA methyltransferase [Halorhodospira halophila SL1] gi|121588860|gb|ABM61440.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Halorhodospira halophila SL1] Length = 271 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 115/240 (47%), Gaps = 10/240 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTVPPQTIDKIVG 106 +YG H A + + RL+ + V+ V + +D++ Sbjct: 25 LVYGQHAAREAAAYDPAGVEAVWVEHGRRDARLERLLDKLGRQGVTVERVHRRVLDQMA- 83 Query: 107 KEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+ L + + L LL+VLD V DPHN+GA +RSA A Sbjct: 84 EGGNHQGIVLRYSGTPARGEGELADLVDAEPEPLLLVLDRVQDPHNLGACMRSAAAAGAH 143 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ + + + S + K+A+GA++ IP+ +++NL LQ++ G +G + +++K Sbjct: 144 GVVAPRDRAAALSPAVHKTAAGAVQRIPFFQVTNLARTLQQLRDAGVHVVGAAGEAEKSC 203 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL+LG EG+GLR T+E + MPG +++LNVS AA V L+ Sbjct: 204 YEVDLRGPLALVLGGEGEGLRRLTRERCDERVAIPMPGSMESLNVSVAAGVLLFEAVRQR 263 >gi|297158395|gb|ADI08107.1| putative RNA methyltransferase [Streptomyces bingchenggensis BCW-1] Length = 317 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 69/280 (24%), Positives = 112/280 (40%), Gaps = 14/280 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQ 70 ++ H AK R + K+ R + N + G + V AL S Q Sbjct: 40 EMRKGH-AKQRVANARAKQAARRPAPRRGGGKGTNELVVGRNPVVEALREGVPASMLYVQ 98 Query: 71 LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128 + R + P +D++ HQGL L+ P + Sbjct: 99 QFIDSDERVREALKLAADRGGIHLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDL 157 Query: 129 ------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L++ LD V DP N+GA++RS AF G++ +R + +A K+++G Sbjct: 158 LDAAAEEGQDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 217 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLR 241 P R +NLT AL+ G +GL +D ++ + + ++ G+EGKGL Sbjct: 218 TAARTPVARATNLTRALEAYKKAGLMVVGLDADGDTEVQNAEVLDGPVVIVAGSEGKGLS 277 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + + MPG ++LN A V LY H + Sbjct: 278 RLVAETCDVLVRIPMPGGAESLNAGVATGVVLYEVVRHRS 317 >gi|126656120|ref|ZP_01727504.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. CCY0110] gi|126622400|gb|EAZ93106.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. CCY0110] Length = 291 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 72/258 (27%), Positives = 122/258 (47%), Gaps = 13/258 (5%) Query: 34 QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPH 89 +S + S + ++ +YG H+V AAL R++ ++ + + Sbjct: 29 RSQSNTSAEPQETDDDLIYGRHSVLAALE-GDRQLNRIWITNRLHYDPRFHNLIQGSKAK 87 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVN 142 + V Q + +I A HQG+A + AP LD ++ ++++ D + Sbjct: 88 GAVIDEVSLQRLSQIT-NGANHQGVAAQVAPYTYHELDELITQAKANSDAPVIVIADGIA 146 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DPHN+GAI+R+A A C G+I +R + ++ ++K A+GALE P R+ NL+ AL+ + Sbjct: 147 DPHNLGAIIRTAEAMGCQGLIIPQRRAAGVTSTVSKVAAGALESFPVARVVNLSRALETL 206 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF G ++ K L I L++G+EG GL TQ + + + G + Sbjct: 207 KKEGFWIYGTVAEGGKRLHDFNFEGAIGLVIGSEGSGLSLLTQRCCDQLVSIPLEGKTPS 266 Query: 263 LNVSNAAAVALYITQNHF 280 LN S AAA+ LY Sbjct: 267 LNASVAAAINLYEIYRQR 284 >gi|239636929|ref|ZP_04677927.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus warneri L37603] gi|239597477|gb|EEQ79976.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus warneri L37603] Length = 248 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E++ + G H V A+ + KI K V+TVP +D + Sbjct: 2 EDIVIVGRHAVKEAIISGHSINKILIQDGIKKQQINDILKNAKDQKLIVQTVPKSKLDFL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D Q +++LD + DPHN+G+ILR+A A Sbjct: 62 S--TAPHQGVAALVAPYEYADFDQFLKQQKEKDGLSTVIILDGLEDPHNLGSILRTADAS 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S S + +AK+++GA++H+P IR++NL + ++ S GF G +++ Sbjct: 120 GVDGVIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTNLAKTIDELKSNGFWVAGTEANNA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A+++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 180 TDYRDLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239 Query: 278 NHF 280 Sbjct: 240 RKR 242 >gi|319938687|ref|ZP_08013051.1| SpoU rRNA methylase [Streptococcus anginosus 1_2_62CV] gi|319811737|gb|EFW08003.1| SpoU rRNA methylase [Streptococcus anginosus 1_2_62CV] Length = 246 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 100/276 (36%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + + K K R++ + + G H A Sbjct: 1 MNIITSKANNVVKNTKKLLQKKYRKD---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + N KI + + + R+ V V + + + + +A Sbjct: 40 V-NAQAKIRHIFVLEEFVDRVQDFPQ------VYVVTAEILADLADSKTPQGIVAELAFE 92 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L+ V DP N+G I+R+A A DG+ ++ + + +S Sbjct: 93 EATIP---SVLKGKYLFLEDVQDPGNVGTIIRTADAAGYDGVFISQHSADIYNLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+ + S + AL+LG EG+G+ Sbjct: 150 QGSHFHLPIYRVKTADFLDLAKQAQLPILATTLSKDSMDYRKLAPLSNFALVLGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + E A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SSEMAEAADYLIHISMKGRAESLNVAVAAGILIFAL 245 >gi|218261847|ref|ZP_03476542.1| hypothetical protein PRABACTJOHN_02213 [Parabacteroides johnsonii DSM 18315] gi|218223738|gb|EEC96388.1| hypothetical protein PRABACTJOHN_02213 [Parabacteroides johnsonii DSM 18315] Length = 249 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 107/244 (43%), Gaps = 11/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 EN ++G+ V A+ KI + L+R ++ PV+ VP + +D+ Sbjct: 2 KENEMVFGIRAVIEAIQADKEIDKILVKRELQGDLSRELFEVLKGRDIPVQRVPAERLDR 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ + L+ + +++LD V D N GAI R+ Sbjct: 62 LT--RKNHQGVIAFIPAVTYERLENIIPFVYEQGKNPFIVLLDGVTDVRNFGAIARTCEC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D I+ R S + +A K+++GAL +P + ++T+A++ + + G + S + Sbjct: 120 AGVDAIVIPSRGSVTVNADAIKTSAGALHVLPVCKEKSITEAIRFLQASGVKVYAASEKA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +A+++GAE G+ SM + G I +LNVS A+++ +Y Sbjct: 180 FENYTAIKYDGPVAIVMGAEDTGVSMDNLRICDSMVKIPQFGTIGSLNVSVASSILVYEV 239 Query: 277 QNHF 280 Sbjct: 240 VRQR 243 >gi|289450233|ref|YP_003475064.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184780|gb|ADC91205.1| RNA methyltransferase, TrmH family, group 3 [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 307 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 60/283 (21%), Positives = 116/283 (40%), Gaps = 29/283 (10%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPE-----------NLFLYGVHTVSAALNNPSRKIFQLLA 73 R + K+ + + +R L G + V AL R+I ++ Sbjct: 26 RRTKTAKRYDNSLKVARERENTGGHADTEKIATREDRLEGRNPVIEALRAG-RQIDKIWV 84 Query: 74 TKNALARLDW-------DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 R + + V VP +D + + HQG+ + A + + Sbjct: 85 QAMGDGRRPEPTLAGIVNMAISSGAVVNQVPRSVLDNMS-QTGAHQGVIAQAAVIPYVDI 143 Query: 127 DAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 D + + +++ D + D +N+GAILR+A + G++ K + AV AK+ Sbjct: 144 DEILAVAAAKQEDPFIIIADEIQDSYNLGAILRTAESAGVHGVVFPKHRQVTLDAVTAKA 203 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ++GA+ H+P R++NL + + G GL+ D + + + IAL++G EGKG Sbjct: 204 SAGAVNHVPCARVNNLVQTMNYLKGKGVWIAGLNMDGESIFDNKKMTGPIALVVGNEGKG 263 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHF 280 + + + M G++ +LN + A +A++ Sbjct: 264 ISRLVADNCDFTVSIPMQGVLNSLNAAVATGIAVFETLRLRQR 306 >gi|315605244|ref|ZP_07880290.1| RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313061|gb|EFU61132.1| RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 325 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 78/290 (26%), Positives = 129/290 (44%), Gaps = 15/290 (5%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 + K ++ + +H K++R R+ ++ + KS +P + + G + V+ A Sbjct: 38 TPKAEDRTYHP--AHKRKVKREAREAQEAAIARARAKSSIRVKPGHELIAGRNPVAEAAR 95 Query: 63 N--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 P ++F L K+ PV V + +D AVHQG+A+E Sbjct: 96 ASVPIERVFVLDNVKDDRVEEVVRLASAMGAPVYEVTRRDLDVATD-GAVHQGVAIEVRG 154 Query: 121 LLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 LL+ LD V DPHN+GA+LRSA AF DG+I +R S + Sbjct: 155 YEYADASDLIAGSLQQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVN 214 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232 K ++GA +P R +NL AL++ G+ +GL PL + + ++ Sbjct: 215 TTAWKVSAGAAARVPVARATNLVRALEEAKRAGYFVVGLDGGGDAPLRGLSLADGPLVVV 274 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 GAEG GL +ET + + + +++LN + A +ALY + AK Sbjct: 275 TGAEGAGLSRLVRETCDQIVSIPIASTVESLNAAVATGIALYEVASLRAK 324 >gi|85057748|ref|YP_456664.1| 23S rRNA methyltransferase [Aster yellows witches'-broom phytoplasma AYWB] gi|84789853|gb|ABC65585.1| 23S rRNA methyltransferase [Aster yellows witches'-broom phytoplasma AYWB] Length = 235 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 5/228 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + + A+ RKI+QL + L H + V + + + K+ Sbjct: 2 IIYGKNPIKEAIKA-QRKIYQLYLDEKIKDHLFIMFLQKHNIAYQLVDKKFLYDLT-KQK 59 Query: 110 VHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 HQG+A LD Q ++LD +NDPHN+GAILR+ A + DG+I +K Sbjct: 60 THQGIAANVCDYTFYDLDTYLDSTKFQKFLILDAINDPHNLGAILRTVEACALDGVIMSK 119 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + ++ +AK + GALE+ ++NL + K+ +G S+S + Q KN Sbjct: 120 KNQVPLNSTVAKISCGALEYTKVFLVTNLHQTILKLKKNQVLIVGTDSNSSQSFHQIPKN 179 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +I+G EG G+R ++ + + M G I +LNVS AAA+ +Y Sbjct: 180 SSLGIIVGNEGTGIRHLLKKQCDLLVKIPMYGKINSLNVSVAAALMIY 227 >gi|322411058|gb|EFY01966.1| putative tRNA/rRNA methyltransferase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 248 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ +L+ K++ + + P +T+ ++ Sbjct: 10 NDIVYGVHAVTESLHANTGNKLYIQEDLRGKNVDNIKRLATEKKVSISWTPKKTLSEMT- 68 Query: 107 KEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD ++ L+++LD + DPHN+G+ILR+A A + Sbjct: 69 EGAVHQGFVLRVSAFAYTELDVILEKAEQEDNPLILILDGLTDPHNLGSILRTADATNVC 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V++K+++GA+EH+ R++NL+ L K+ + GF T G + Sbjct: 129 GVIIPKHRAVGVTPVVSKTSTGAVEHVLIARVTNLSQTLDKLKAKGFWTFGTDMNGTPSH 188 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 189 RWNT-SGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247 >gi|302672120|ref|YP_003832080.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus B316] gi|302396593|gb|ADL35498.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316] Length = 268 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 48/263 (18%), Positives = 118/263 (44%), Gaps = 11/263 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWD 84 N+ K++ ++ +KS+ + + + G+ + A P ++ ++ T L + + D Sbjct: 6 NNDRVKQVVNYIEKSKARREDDVFVIEGMKMLREA---PVLQVREVYVTTRFLDKASEED 62 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMV 137 + + + V + + K+ + +A+ + + D L++V Sbjct: 63 KEILWRYGAEEVSDEVMKKMAATQTPQGVIAVISQYHYTMEEVLEGYNQDDEGAKPLILV 122 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L+++ DP N+G +LRS GII +K + + + +S G++ +P+I + ++ + Sbjct: 123 LENIQDPGNVGTMLRSGEGAGVTGIILSKGSADIYNPKVIRSTMGSIFRMPFIYVESIPE 182 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 L+ + + G T +K ++ A ++G EG GL +T + A + + M Sbjct: 183 VLETLKANGIHTYAAHLKGEKNYDEFDYTHPTAFLIGNEGNGLTKETADAADTYILIPMK 242 Query: 258 GIIKALNVSNAAAVALYITQNHF 280 G ++++N + ++A+ + Sbjct: 243 GEVESMNAATSSAILTFEASRQR 265 >gi|300770796|ref|ZP_07080674.1| RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861] gi|300762353|gb|EFK59171.1| RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861] Length = 259 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 62/258 (24%), Positives = 110/258 (42%), Gaps = 13/258 (5%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPH 89 MQ+F + R + N ++G+ V A+++ I L + +L H Sbjct: 1 MQNFQRHDRSEKRESNQMVFGIRAVIEAIDSGKE-IESLFVQRGLGGSLFLELKSLIKEH 59 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVN 142 + VP + +++I HQG+ +P+ ++ + L+++LD V Sbjct: 60 EIGFQQVPIEKLNRIT--RKNHQGVIAVISPITYQKIEDLIPEIYEKGETPLILMLDGVT 117 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+GAI R+A II K+ S + K+++GAL IP R NL + + Sbjct: 118 DVRNLGAIARTAECSGVHAIIVPKKGSAEINPDAIKTSAGALYKIPVCRHDNLGKVGKFL 177 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G Q + + +++ + +I+GAE G+ + +A + M G I + Sbjct: 178 IDSGIQLVVSTEKTEESIYSVDYTAPTCIIMGAEDIGVSDDLIRISDHLAKIPMFGEIGS 237 Query: 263 LNVSNAAAVALYITQNHF 280 LNVS +A V LY Sbjct: 238 LNVSVSAGVVLYEAIRQR 255 >gi|222152119|ref|YP_002561279.1| hypothetical protein MCCL_1876 [Macrococcus caseolyticus JCSC5402] gi|222121248|dbj|BAH18583.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 263 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 114/241 (47%), Gaps = 10/241 (4%) Query: 49 LFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + G H V +A+ + K+ + + V+TVP +D + Sbjct: 22 EIIVGRHAVKSAVTSGHEINKVLIQEGINKSQISNLLNLCKEKKIVVQTVPKSKLDHLSD 81 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ +P L+ +M+LD + DPHN+G+I+R+A A D Sbjct: 82 --VPHQGVLAMISPYEYTELEDFLSNKASDKLSTIMILDGLEDPHNLGSIIRTADAIGID 139 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ KR S S + + K+++GA+EH+P +R++N+ A+ K+ G+ G + Sbjct: 140 GIMIPKRRSVSLNQTVVKASTGAVEHVPVMRVNNINQAIDKLKDAGYWVAGTDAKQSVDY 199 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +A+++G+EG+G+ +E + HL M G + +LN S AA++ +Y Sbjct: 200 RKMTADIDLAIVIGSEGEGMSRLVKEKCDFLIHLPMVGHVNSLNASVAASLLMYEVYRKR 259 Query: 281 A 281 Sbjct: 260 N 260 >gi|126654404|ref|ZP_01726149.1| 23S rRNA methyltransferase [Bacillus sp. B14905] gi|126589154|gb|EAZ83338.1| 23S rRNA methyltransferase [Bacillus sp. B14905] Length = 250 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 116/245 (47%), Gaps = 11/245 (4%) Query: 45 QPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + + G + V AL + K++ K + D V+ VP + +D Sbjct: 3 EQNGEIIAGKNPVLEALRSGRDMNKVWIAEGVKKSGVNELLDLARERGVIVQFVPKKKVD 62 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ A HQG+ A L+ + ++LD + DPHN+G+I+R+A Sbjct: 63 QLSS--ANHQGIVASVAAYQYAELEDLFAAAAKKQEDPFFLILDELEDPHNLGSIMRTAD 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GII KR S S +AV+AK+++GA+EH+P +R++NL + ++ G G + Sbjct: 121 AIGAHGIIIPKRRSVSLTAVVAKASTGAIEHVPVVRVNNLAQTVDELKERGVWIAGTDAK 180 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + +A+I+G+EGKG+ +E + HL M G + +LN S AAA+ +Y Sbjct: 181 GSVDYRKMDATLPLAIIIGSEGKGMGRLLKEKCDFLYHLPMVGHVTSLNASVAAALLMYE 240 Query: 276 TQNHF 280 Sbjct: 241 VYRKR 245 >gi|229547084|ref|ZP_04435809.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis TX1322] gi|255971593|ref|ZP_05422179.1| RNA methyltransferase TrmH [Enterococcus faecalis T1] gi|255974565|ref|ZP_05425151.1| RNA methyltransferase TrmH [Enterococcus faecalis T2] gi|256618482|ref|ZP_05475328.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200] gi|256761897|ref|ZP_05502477.1| RNA methyltransferase TrmH [Enterococcus faecalis T3] gi|256855025|ref|ZP_05560386.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256956969|ref|ZP_05561140.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5] gi|256960769|ref|ZP_05564940.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96] gi|256964027|ref|ZP_05568198.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704] gi|257078646|ref|ZP_05573007.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1] gi|257088532|ref|ZP_05582893.1| RNA methyltransferase trmH [Enterococcus faecalis CH188] gi|257421386|ref|ZP_05598376.1| RNA methyltransferase [Enterococcus faecalis X98] gi|293382262|ref|ZP_06628202.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis R712] gi|293386689|ref|ZP_06631262.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis S613] gi|294780005|ref|ZP_06745384.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis PC1.1] gi|300862121|ref|ZP_07108201.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TUSoD Ef11] gi|307268964|ref|ZP_07550328.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX4248] gi|307276292|ref|ZP_07557419.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX2134] gi|307284105|ref|ZP_07564275.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0860] gi|307287135|ref|ZP_07567206.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0109] gi|307296637|ref|ZP_07576457.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0411] gi|312901249|ref|ZP_07760532.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0470] gi|312903156|ref|ZP_07762337.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0635] gi|312908760|ref|ZP_07767699.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis DAPTO 512] gi|312952481|ref|ZP_07771349.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0102] gi|312979220|ref|ZP_07790924.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis DAPTO 516] gi|229307813|gb|EEN73800.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis TX1322] gi|255962611|gb|EET95087.1| RNA methyltransferase TrmH [Enterococcus faecalis T1] gi|255967437|gb|EET98059.1| RNA methyltransferase TrmH [Enterococcus faecalis T2] gi|256598009|gb|EEU17185.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200] gi|256683148|gb|EEU22843.1| RNA methyltransferase TrmH [Enterococcus faecalis T3] gi|256709538|gb|EEU24585.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256947465|gb|EEU64097.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5] gi|256951265|gb|EEU67897.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96] gi|256954523|gb|EEU71155.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704] gi|256986676|gb|EEU73978.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1] gi|256997344|gb|EEU83864.1| RNA methyltransferase trmH [Enterococcus faecalis CH188] gi|257163210|gb|EEU93170.1| RNA methyltransferase [Enterococcus faecalis X98] gi|291080376|gb|EFE17740.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis R712] gi|291083858|gb|EFE20821.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis S613] gi|294452899|gb|EFG21322.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis PC1.1] gi|295112380|emb|CBL31017.1| rRNA methylase, putative, group 3 [Enterococcus sp. 7L76] gi|300848646|gb|EFK76403.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TUSoD Ef11] gi|306495973|gb|EFM65561.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0411] gi|306501733|gb|EFM71024.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0109] gi|306503476|gb|EFM72725.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0860] gi|306507035|gb|EFM76178.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX2134] gi|306514772|gb|EFM83323.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX4248] gi|310625198|gb|EFQ08481.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis DAPTO 512] gi|310629577|gb|EFQ12860.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0102] gi|310633547|gb|EFQ16830.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0635] gi|311287985|gb|EFQ66541.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis DAPTO 516] gi|311291626|gb|EFQ70182.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0470] gi|315029624|gb|EFT41556.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX4000] gi|315033510|gb|EFT45442.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0017] gi|315036333|gb|EFT48265.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0027] gi|315143637|gb|EFT87653.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX2141] gi|315149010|gb|EFT93026.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX4244] gi|315151336|gb|EFT95352.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0012] gi|315153505|gb|EFT97521.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0031] gi|315155076|gb|EFT99092.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0043] gi|315158519|gb|EFU02536.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0312] gi|315163380|gb|EFU07397.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0645] gi|315165681|gb|EFU09698.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX1302] gi|315168267|gb|EFU12284.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX1341] gi|315171292|gb|EFU15309.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX1342] gi|315174137|gb|EFU18154.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX1346] gi|315578629|gb|EFU90820.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0630] gi|323479284|gb|ADX78723.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Enterococcus faecalis 62] gi|327533899|gb|AEA92733.1| RNA methyltransferase [Enterococcus faecalis OG1RF] gi|329576211|gb|EGG57729.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX1467] Length = 285 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 72/284 (25%), Positives = 114/284 (40%), Gaps = 12/284 (4%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65 K+EK K R + R ++ + E F++G H AL Sbjct: 2 KNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGR 61 Query: 66 -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 K+F + A PVK VP +D + VHQG+ L Sbjct: 62 GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTMSDH-GVHQGMVLAITAYQYL 120 Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 TL+ + ++LD + DPHN G+ILR+A A DGII K + + + Sbjct: 121 TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA+EHIP R++NL ++ + F G IALI+G EG Sbjct: 181 KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYRRWNT-QGAIALIIGNEG 239 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +G+ + + + M G +++LN AA + +Y Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGRN 283 >gi|154687000|ref|YP_001422161.1| YsgA [Bacillus amyloliquefaciens FZB42] gi|154352851|gb|ABS74930.1| YsgA [Bacillus amyloliquefaciens FZB42] Length = 248 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 105/277 (37%), Gaps = 30/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K++K+ K H + + + G H A Sbjct: 1 MKRIDSAKNQKVKDWKKLHTK-------------------KERLKTNTFLIEGEHLAEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + L+ ++A+ A+L P + + E + A+ Sbjct: 42 LKSKGTVKEILVNDESAIP-----ADLDMSIPCYVLSEDAFSAVTETETPQRIAAVC--- 93 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + L+++D V DP N+G ++R+A A D ++ + + + +SA Sbjct: 94 --HMPDKRPDQLKRLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGEGTADPYNGKTLRSA 151 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP ++ + ++ S G G + ++ + + ALI+G EG G+ Sbjct: 152 QGSHFHIPILKRPLD-EFTAELKSQGVAIYGTALENGAAYQSVKPEESFALIVGNEGAGV 210 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + ++ + G ++LNV+ AAA+ +Y + Sbjct: 211 DAGLLQKTDLNLYVPLYGQAESLNVAVAAAILVYHLR 247 >gi|114331617|ref|YP_747839.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas eutropha C91] gi|114308631|gb|ABI59874.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas eutropha C91] Length = 278 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 46/270 (17%), Positives = 85/270 (31%), Gaps = 7/270 (2%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 + + R H +KK+ + SR L G+H + + L + +++ Sbjct: 2 QITSNMRRITSREHPVFKKLFKLQRSSRQRRDDGLALLDGIHLLQSYLASGRIPELLIVS 61 Query: 74 TKNALARLDWDANLPHPFPVKTVP----PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 + + G+ Sbjct: 62 ESGGQHAEINQLLGSIGKDFGRADCLMLSDALFNQISLVKTPVGIMTLVRIPRHTRSVDS 121 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + L+ + DP N+G+ILRSAVA + + S S ++ GA + Sbjct: 122 YEDSFCIALEAIQDPGNLGSILRSAVAAGVKDAFLSSDCADSWSPKTLRAGMGAHFSLRI 181 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S+L +Q + I + + + G EG G+ + E Sbjct: 182 HEDSDL---IQIACQFNGNVIATALAGADNIYHTDLRGPVMFAFGNEGCGVSEELLEVVR 238 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + MPG ++LNV+ AAA+ L+ Sbjct: 239 ERVAIPMPGCAESLNVAAAAAICLFEKIRQ 268 >gi|172056121|ref|YP_001812581.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15] gi|171988642|gb|ACB59564.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sibiricum 255-15] Length = 254 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 114/245 (46%), Gaps = 10/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 FLYG + V AL + K+F + + + VP + Sbjct: 7 EGQDFLYGRNPVLEALRSGREMNKLFIQEGQQKGPLAVIHAMAKEAGVQTQIVPRSKLHG 66 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + G + HQG+ A LD + + L+++LD + DPHN+G+ILR+A A Sbjct: 67 LTGSD-NHQGVVAAVAAYEYAELDDIFALAEKKDETPLMILLDELEDPHNLGSILRTADA 125 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII KR S + V+AK+++GA+EHIP +R++NLT ++ + G +G + Sbjct: 126 VGAHGIIIPKRRSVGLTQVVAKASTGAIEHIPVVRVTNLTRTMEDLKKKGIWFVGTDARE 185 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +++G+EGKG+ +E + HL M G + +LN S AA++ LY Sbjct: 186 SDDYRTLDGTMPLGIVIGSEGKGMSRLVREKCDFLVHLPMAGHVTSLNASVAASLLLYEV 245 Query: 277 QNHFA 281 Sbjct: 246 YRTRK 250 >gi|67924215|ref|ZP_00517655.1| RNA methyltransferase TrmH, group 3 [Crocosphaera watsonii WH 8501] gi|67853934|gb|EAM49253.1| RNA methyltransferase TrmH, group 3 [Crocosphaera watsonii WH 8501] Length = 292 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 79/293 (26%), Positives = 133/293 (45%), Gaps = 22/293 (7%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSR---HTSQPENLFLYGVHTV 57 M+ +S++ S K K + + + R T Q ++ +YG H+V Sbjct: 1 MSNKPIPRSDRRSSKK--------PRFSGKKSVVISSPQPRANTQTEQSDDDLIYGRHSV 52 Query: 58 SAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 AAL + + + + A+ + V Q + +I A HQG+ Sbjct: 53 LAALESDRQLNRIWITNRLHYDPRFHNLIQASKAKGAVIDEVSVQRLSQIT-NGANHQGV 111 Query: 115 ALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 A + AP LD + ++++ D ++DPHN+GAI+R+A A C G+I +R Sbjct: 112 AAQVAPYNYHDLDGLIAQAKANSDEPVIVIADSISDPHNLGAIIRTAEALGCQGMIIPQR 171 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + ++ ++K A+GALE P R+ NL+ AL+ + + GF G S+ K L+ Sbjct: 172 RAAGVTSTVSKVAAGALESFPVARVVNLSRALETLKAEGFWIYGTVSEGGKRLQDFNFRG 231 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G+EG GL TQ + + + G +LN S AAA+ LY Sbjct: 232 AIGLVIGSEGSGLSLLTQRCCDELVSIPLGGKTPSLNASVAAAINLYEIYRQR 284 >gi|163757828|ref|ZP_02164917.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica DFL-43] gi|162285330|gb|EDQ35612.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica DFL-43] Length = 287 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 95/259 (36%), Gaps = 6/259 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K +++ + K +H + + G+ V A++ I L+ K + + Sbjct: 23 SNPVIKDIRALSMK-KHRDETGSFLAEGLKLVIDAIDQGWN-IRTLIYAKAQRGKPQVEK 80 Query: 86 NLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 V V + + I ++ +A+ L A + + + LD V Sbjct: 81 IAALTVARGGLVLEVSEKVLTAITRRDNPQAVIAVFEQKLTPLDAVAPKPDETWIALDRV 140 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+A A G+I S ++ G++ +P +R S Sbjct: 141 RDPGNLGTIIRTADAAGASGVILIGDTVDPFSTETVRATMGSIFAMPLLRASEAEFLTWS 200 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + S K + L++G E GL ++ +A + G Sbjct: 201 KKTAPLVVGSHLKGSVDYRTIAYKGRPVVLLMGNEQAGLPDTLAQSCGKLARIPQTGRAD 260 Query: 262 ALNVSNAAAVALYITQNHF 280 +LN++ A V L+ + H Sbjct: 261 SLNLAIATGVMLFEARRHL 279 >gi|81300008|ref|YP_400216.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 7942] gi|81168889|gb|ABB57229.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 7942] Length = 234 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 3/234 (1%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L G H + A+ + P +TV + + Sbjct: 2 GAFLLEGTHLLQEAIATNWPLLQVCATPAWQNQHPQLWQQAIQAAPEQTVSDDLLAYLCT 61 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 +A+ ++ LL+ ++ + DP N+G I+R+A A DG+ T Sbjct: 62 TVNPDGVVAIAARQPQRQP---PTSASLLIAVETLQDPGNLGTIIRTAAAAGADGLWLTA 118 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + + ++++G +P ++L L+ G+Q + + L Q Sbjct: 119 DGVDPDHPKVLRASAGQWFRLPIAIATDLGQTLRSWQQQGYQIVSTLPRATTTLWQADLT 178 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L+LG EG GL P A S + +++LNV+ AAA+ LY + Sbjct: 179 RPTVLLLGNEGAGLSPDLAAIADSAVTIPQAAGVESLNVAIAAALLLYEARRQR 232 >gi|284038016|ref|YP_003387946.1| RNA methyltransferase, TrmH family, group 3 [Spirosoma linguale DSM 74] gi|283817309|gb|ADB39147.1| RNA methyltransferase, TrmH family, group 3 [Spirosoma linguale DSM 74] Length = 276 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 56/270 (20%), Positives = 103/270 (38%), Gaps = 13/270 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 + R +R K + K ++ QP+ + ++G+ +V L + + I +L K Sbjct: 4 RRNPRVNRPNYKPRPGGSKPQYQPQPDEM-VFGIQSVIETLKSDQQ-IDKLYMEKGLSNP 61 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQ 133 + ++ VP + +D+ HQG+ A + L Sbjct: 62 DIQNLAFQKRVTIQRVPVERLDRFT--RKNHQGVVCLIAQVQYVKLSNVIADVFERGEVP 119 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++LD + D N GAI R+A I+ R + + ++ K++SGAL HI R Sbjct: 120 FFLLLDRITDVRNFGAIARTAECTGIQCIVIPGRGAAAINSDAMKTSSGALNHISVCREP 179 Query: 194 N--LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + T + S +A+I+G+E G+ P+ + Sbjct: 180 DLTETVKYLQESGITVVACTEKSARDLYERTTDLTGPMAIIMGSEEDGISPELLRMVDTH 239 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + G + +LNVS A V LY + Sbjct: 240 VKIPLLGAVGSLNVSVATGVILYEAVRQRS 269 >gi|170699888|ref|ZP_02890918.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria IOP40-10] gi|170135210|gb|EDT03508.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria IOP40-10] Length = 260 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 102/257 (39%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ YK++++ + + L G H A L+ + + AT+ ALA + Sbjct: 6 SRDNPLYKRLKALAGSTSQQRRGGQALLEGFHLAGAYLDTGATPELCV-ATEGALAHAEA 64 Query: 84 DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A + + V P + + G L + P + V ++ +++ D V Sbjct: 65 QAIIARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPVQPLPERVTHTSVVL--DGVQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA A + + + S+ + +S GA + ++ Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDALAGRL 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 T + + + +A + G EG G+ ++ AT + PG +++ Sbjct: 183 DVPVALTDSHGTQAVYDCD---LAGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ AAAV L+ Sbjct: 240 LNVAAAAAVCLFEQVRQ 256 >gi|37520123|ref|NP_923500.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421] gi|35211115|dbj|BAC88495.1| gll0554 [Gloeobacter violaceus PCC 7421] Length = 265 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 99/256 (38%), Gaps = 2/256 (0%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K+++ + ++ + G H V+AAL F Sbjct: 6 QNPVIKQLRKLHA-AKERQAQGLFLVEGTHPVAAALAGGWELEFVCATEAWVGEHPAMHT 64 Query: 86 NLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 L +TV P I+ + +A + R+ LL++ + + DP Sbjct: 65 ALSGRAGRYETVAPAVIEALADTVHPSGVVAAVRRRADAWRPLLERDVSLLVLGERLQDP 124 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G ++RS A DG++ + + + ++++G P + + +LT + + Sbjct: 125 GNVGTLVRSCAAVGADGLVLSADSVDPDHPKVLRASAGLWFRSPPLSVPDLTACVADLVR 184 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G Q + + + + L + A +LG+EG+GL + + + +++LN Sbjct: 185 RGVQVLAADAGAGRSLWECDLRRPTAFVLGSEGQGLSEPLRRCLPERVGIPLAPGVESLN 244 Query: 265 VSNAAAVALYITQNHF 280 V+ + A+ L+ Sbjct: 245 VAVSGALLLFEAARQR 260 >gi|239981216|ref|ZP_04703740.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074] gi|291453079|ref|ZP_06592469.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074] gi|291356028|gb|EFE82930.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074] Length = 312 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 117/280 (41%), Gaps = 15/280 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQ 70 + H K R + K+ Q+ K+R + + + G + V AL + S Q Sbjct: 36 EARKGHV-KNRLANAKAKQ-QARRPKARPGQRSTSELVVGRNPVYEALRDGVPASTLYVQ 93 Query: 71 LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128 + R + P +D++ HQGL L+ P + Sbjct: 94 QFIDNDERVRDALALAAERGGIHLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHAEDL 152 Query: 129 ------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L+++LD V DP N+GA++RS AF G++ +R + +A KS++G Sbjct: 153 TAAAYDAGQDPLIVLLDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAG 212 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLR 241 A P R +NLT L+ G +GL++D + + +A+++G+EGKGL Sbjct: 213 AAARTPVARATNLTRTLEAYKKEGVVVVGLAADGEADVTDLPALEGPVAIVVGSEGKGLS 272 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + MPG ++LN AA + LY A Sbjct: 273 RLVGETCDIRVRIPMPGGAESLNAGVAAGIVLYEAARRRA 312 >gi|294011050|ref|YP_003544510.1| RNA methyltransferase [Sphingobium japonicum UT26S] gi|292674380|dbj|BAI95898.1| RNA methyltransferase [Sphingobium japonicum UT26S] Length = 265 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 90/261 (34%), Gaps = 8/261 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K+++S +K + G+ ++ A ++L + L + Sbjct: 9 SNPLVKRVRSLREK-KFRKAEGLFLAEGLRILTEAREEGVLP--EMLFHAGSTHPLAAEL 65 Query: 86 NLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 V P + KI GK+ + + L S + +V + Sbjct: 66 IAAMEAAGGDVIETTPDILAKISGKDNPQAVVGVYRDRLTPLAKLDRGKSDIWIVAQSLR 125 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ILR+ A G+I S +++ GAL + + Sbjct: 126 DPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRASMGALFTQSITQARWGEFMH-WL 184 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + IG S + ++ L++G E +GL + + + M G + Sbjct: 185 REGPGELIGTSLKATHDYQEPRYQSPSFLLVGNEAQGLPESYEAECDLLVKMPMLGKADS 244 Query: 263 LNVSNAAAVALYITQNH-FAK 282 LN + A AV Y N AK Sbjct: 245 LNAAVACAVMAYELLNQKRAK 265 >gi|326800453|ref|YP_004318272.1| RNA methyltransferase, TrmH family, group 3 [Sphingobacterium sp. 21] gi|326551217|gb|ADZ79602.1| RNA methyltransferase, TrmH family, group 3 [Sphingobacterium sp. 21] Length = 241 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 13/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++G+ V A+++ I L + L + D + VP + +D+I Sbjct: 2 VFGIRAVIEAIDSGKE-IESLFIQRGLTGELFKELKDVLRNRNIGYQQVPIEKLDRIT-- 58 Query: 108 EAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ +P+ ++ V + L+++LD + D N GAI R+A D Sbjct: 59 RKNHQGVIAVISPITYQKIEDVIPTIYEEGKVPLILILDGITDVRNFGAIARTAACAGVD 118 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ + S + K+++GAL I R +LT ++ + G Q + + + + Sbjct: 119 ALVVPNKGSAEINPDAIKTSAGALYKIAVCRHESLTQVIKFLQESGLQVVACTEKTGDTI 178 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A+++GAE G+ A +A + M G I +LNVS +A V +Y Sbjct: 179 YKPDFKSPTAIVMGAEDTGISDSIIRNADYLAKIPMFGDIASLNVSVSAGVIIYEAIRQR 238 >gi|315023474|gb|EFT36480.1| rRNA methylase [Riemerella anatipestifer RA-YM] Length = 264 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 103/259 (39%), Gaps = 11/259 (4%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLP 88 +KM+ + + + F++G+ V A+ K+F + ++ Sbjct: 5 QKMKQDYTSHKKNNDKKEDFIFGLRPVIEAIEAGKTIDKVFLQNGLQGSIYAELKALLAK 64 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHV 141 H VP + +++ HQG+ + + +++ + L++LD + Sbjct: 65 HKIRPNYVPIEKLNRFT--RKNHQGVVAFISDIPFHSIEAVLPEIFEQGKTPFLVILDRL 122 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 D N GAI R+A D II ++ + ++ K+++GAL ++ + NL + Sbjct: 123 TDVRNFGAICRTAECVGVDAIIIPEKGAAPINSDAIKTSAGALYNVKICKEKNLAHTVDF 182 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G + ++K + AL++G E KG+ + + L + G + Sbjct: 183 LQQSGVSVFSATEKAEKLIYDIDFKIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQ 242 Query: 262 ALNVSNAAAVALYITQNHF 280 +LNVS A LY Sbjct: 243 SLNVSVACGAILYEVVRQR 261 >gi|328954219|ref|YP_004371553.1| RNA methyltransferase, TrmH family, group 3 [Desulfobacca acetoxidans DSM 11109] gi|328454543|gb|AEB10372.1| RNA methyltransferase, TrmH family, group 3 [Desulfobacca acetoxidans DSM 11109] Length = 257 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YGVH V AL + +++ K + + I ++VG Sbjct: 9 LIYGVHPVLEALRREGNAVEEVIVVKGRRAPWFEEVKALAQKYGVRFRLADQTWIKRLVG 68 Query: 107 KEAVH------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 G P + L + LL+V D + DP N+G +LR+A A Sbjct: 69 PVNHQGVIARTHGYRYMAEPEMLQRLQQADRNALLVVADCIQDPMNLGNLLRTAYAVGAQ 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ K + ++V+ K+A+GA+ H+P R++NLT A+ G IG + + + L Sbjct: 129 GVLIPKDRAVGVTSVVIKAAAGAMVHLPVCRVTNLTTAITHFKEIGLWVIGAEATASQTL 188 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYITQNH 279 +AL++G EG+GLRP+ ++ + + M G + +LN + A AV +Y Sbjct: 189 YGVDLTGPLALVIGGEGQGLRPRVKQACDLLVAIPMAGEQVGSLNAATAGAVMMYEIYRQ 248 Query: 280 FA 281 A Sbjct: 249 RA 250 >gi|225857083|ref|YP_002738594.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae P1031] gi|225725663|gb|ACO21515.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae P1031] gi|332074779|gb|EGI85253.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA17545] Length = 242 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ +I Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEIT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + LD + LL++LD + DPHN+G+ILR+A A + Sbjct: 63 EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + K KIALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFLNR 241 >gi|170732873|ref|YP_001764820.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3] gi|169816115|gb|ACA90698.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia cenocepacia MC0-3] Length = 247 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 117/239 (48%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + + + ++L + R D A + + + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + S LD + LL+VLD V DPHN+GA LR A + Sbjct: 66 TER-HQGVVARVEDMPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S ++ L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEAPATLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|56461042|ref|YP_156323.1| rRNA methylase [Idiomarina loihiensis L2TR] gi|56180052|gb|AAV82774.1| RRNA methylase, SpoU family [Idiomarina loihiensis L2TR] Length = 248 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 9/245 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTID 102 + + ++G+H V A L N ++ +L +K R + + VP Q ++ Sbjct: 2 SQKVTVFGLHAVRAILKNHPDRLVELYVSKERQDDSVRDIVNQCHATGVRPQWVPKQALE 61 Query: 103 KIV------GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 K G A Q T L L+ + + L ++LD V DPHN+GA LR+A A Sbjct: 62 KRAEGGNHQGVVATVQSPPTLTEHDLPKLLEQSQQAGLFLILDGVTDPHNLGACLRTADA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I K S + + K ASGA E++P + ++NL AL+ + G G + ++ Sbjct: 122 AGVTGVIVPKDKSAQITPTVRKVASGAAENVPLVVVTNLARALRDLQELGVWAYGTAGEA 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +AL++GAEGKG+R T+ET + + + G + +LNVS A+ V L+ Sbjct: 182 TQSVYDVDYRGPVALVMGAEGKGMRRLTRETCDDLVSIPLSGSVSSLNVSVASGVCLFEV 241 Query: 277 QNHFA 281 Sbjct: 242 VRQRN 246 >gi|319763224|ref|YP_004127161.1| RNA methyltransferase, trmh family, group 3 [Alicycliphilus denitrificans BC] gi|317117785|gb|ADV00274.1| RNA methyltransferase, TrmH family, group 3 [Alicycliphilus denitrificans BC] Length = 248 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 109/242 (45%), Gaps = 11/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V L + I ++ ++A R + + K+ G Sbjct: 6 ILFGFHAVGVRLKTAPQSIIEVYYEATRRDARMRQFLARAKEAGVRLIEADGLRLAKLAG 65 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS--------QLLMVLDHVNDPHNIGAILRSAVAFS 158 A A +LD + + LL+VLD V DPHN+GA LR A Sbjct: 66 SHGHQGVAARVQAVAQLHSLDDLLDQLEADGVANPLLLVLDGVTDPHNLGACLRVADGAG 125 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K ++ SA +AK ASGA E +PY ++NL L ++ IG S D+ K Sbjct: 126 AHAVIAPKDHAVGISATVAKVASGAAETVPYFMVTNLARTLGELKERNIWVIGTSGDADK 185 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL+LGAEG G+R T++T + + M G +++LNVS A+AV LY Sbjct: 186 TLYQVDLKGPVALVLGAEGPGMRQLTRKTCDELVSIPMKGAVESLNVSVASAVCLYEALR 245 Query: 279 HF 280 Sbjct: 246 QR 247 >gi|229917377|ref|YP_002886023.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sp. AT1b] gi|229468806|gb|ACQ70578.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sp. AT1b] Length = 250 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 10/245 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTID 102 + FLYG + V AL + + L + + V VP ++ Sbjct: 3 EEGIDFLYGRNPVLEALRSGRDMNKVFIMEGQQKGPLAQIIAMANEASVQVSFVPKTKLE 62 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155 K+ G E HQG+ A T++ + + L ++LD + DPHN+G+ILR+A Sbjct: 63 KMAGSE-HHQGVVAAVAAYEYKTVEDMFALAASKEETPLFILLDELEDPHNLGSILRTAD 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GII KR S + +AK+++GA+EHIP R++NLT L+++ G +G + Sbjct: 122 AVGAHGIIIPKRRSVGLTQTVAKASTGAIEHIPVARVTNLTRTLEELKEKGLWVVGTDAK 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + N + +++G+EGKG+ +E+ + HL M G + +LN S AAA+ LY Sbjct: 182 ESQDYRRLDGNMPLVVVIGSEGKGMSRLVRESCDFLVHLPMVGHVTSLNASVAAALLLYE 241 Query: 276 TQNHF 280 Sbjct: 242 VHRSR 246 >gi|269926933|ref|YP_003323556.1| RNA methyltransferase, TrmH family, group 3 [Thermobaculum terrenum ATCC BAA-798] gi|269790593|gb|ACZ42734.1| RNA methyltransferase, TrmH family, group 3 [Thermobaculum terrenum ATCC BAA-798] Length = 264 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 108/245 (44%), Gaps = 11/245 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQ 99 +++YG + V L RK+++LL + A ++ V Sbjct: 16 KPSGRVYIYGRNAVRECLLAGRRKVYRLLVAYSHSASQTLEAIESLAARSGLQIERVERS 75 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSA 154 +D++ A HQG+ +E + +++ + +++LD + DP N G +LR+A Sbjct: 76 ILDRLT-HGANHQGVVIEASEFSYSSIEDLLASGELRGKDILMLDSLQDPQNFGTLLRTA 134 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LS 213 F +I + S + + ++SGA EH+ +++NL K+ +G+ +G Sbjct: 135 EVFGIGAVIIPEHRSVEVTPAVVNASSGATEHLNISKVTNLARTASKLKEYGYWVLGLEY 194 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +S + I L++G+EG G+R ++ + + G I +LN + A ++AL Sbjct: 195 DESSSVIWDVDLRIPICLVVGSEGSGIRELVRKRCDLLVKIPQAGRIGSLNAAVAGSIAL 254 Query: 274 YITQN 278 Y Sbjct: 255 YEIYK 259 >gi|227518063|ref|ZP_03948112.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis TX0104] gi|229550656|ref|ZP_04439381.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|257087879|ref|ZP_05582240.1| RNA methyltransferase TrmH [Enterococcus faecalis D6] gi|257418800|ref|ZP_05595794.1| RNA methyltransferase trmH [Enterococcus faecalis T11] gi|227074499|gb|EEI12462.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis TX0104] gi|229304222|gb|EEN70218.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|256995909|gb|EEU83211.1| RNA methyltransferase TrmH [Enterococcus faecalis D6] gi|257160628|gb|EEU90588.1| RNA methyltransferase trmH [Enterococcus faecalis T11] gi|315026626|gb|EFT38558.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX2137] Length = 285 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 72/284 (25%), Positives = 114/284 (40%), Gaps = 12/284 (4%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65 K+EK K R + R ++ + E F++G H AL Sbjct: 2 KNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGR 61 Query: 66 -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 K+F + A PVK VP +D + VHQG+ L Sbjct: 62 GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTMSDH-GVHQGMVLAITAYQYL 120 Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 TL+ + ++LD + DPHN G+ILR+A A DGII K + + + Sbjct: 121 TLEELLEQTKEKTATPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA+EHIP R++NL ++ + F G IALI+G EG Sbjct: 181 KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYRRWNT-QGAIALIIGNEG 239 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +G+ + + + M G +++LN AA + +Y Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGRN 283 >gi|113460298|ref|YP_718358.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus somnus 129PT] gi|170718084|ref|YP_001783373.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus somnus 2336] gi|112822341|gb|ABI24430.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Haemophilus somnus 129PT] gi|168826213|gb|ACA31584.1| RNA methyltransferase, TrmH family, group 3 [Haemophilus somnus 2336] Length = 245 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 109/240 (45%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIVGK 107 +YG+H V A L N ++ ++ K + + V+ + T+DK Sbjct: 5 IYGIHAVQAFLINAPERLIEVYVLKGREDKRLQSVLNELYKLGISVQFLNRDTLDKKANG 64 Query: 108 EAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ P + + + LL+VLD + DPHN+GA LRSA A Sbjct: 65 E-VHQGIIARVQPAKELNENDLVEILQKKANPLLLVLDGITDPHNLGACLRSADAAGVCA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220 +I K S +A+ K A GA E +P +R++NL L+ + + ++ Sbjct: 124 VIVPKDKSAQLTAIARKVACGAAEVVPLVRVTNLARTLRDLQQQHNIWVVGTAGEAIETL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL++GAEG G+R T+ET + + M G + +LNVS A + L+ Sbjct: 184 YEAKLTGGLALVMGAEGDGMRRLTRETCDQLISIPMAGSVSSLNVSVATGICLFEIVRQR 243 >gi|312886272|ref|ZP_07745886.1| RNA methyltransferase, TrmH family, group 3 [Mucilaginibacter paludis DSM 18603] gi|311301297|gb|EFQ78352.1| RNA methyltransferase, TrmH family, group 3 [Mucilaginibacter paludis DSM 18603] Length = 269 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 108/252 (42%), Gaps = 16/252 (6%) Query: 41 RHTSQPENLF---LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVK 94 ++P+ + ++G+ V A+ + I L + L + + + Sbjct: 13 SFRNEPKREYNQMVFGIRAVIEAIRSGKE-IESLFIQRGLGGELFYELKNLLNEYKIESQ 71 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNI 147 VP + ++++ HQG+ +P+ ++ + L+++LD V D N+ Sbjct: 72 QVPVEKLNRVT--TKNHQGVIAIISPITYYKIEDIIPMVFEKGEVPLILILDGVTDVRNV 129 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI R+A I+ + S + K+++GAL +IP R S+L ++ + S G Sbjct: 130 GAIARTAECAGVHAIVVPAKGSAQINPDTIKTSAGALYNIPVCRESSLLQTVKFLQSSGL 189 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 Q + + + + A+++G E G+ + A +A + M G I++LNVS Sbjct: 190 QIVCCTEKTTDFIYAPDYTLPTAIVMGGEDDGVSNEIIRIADHLAKIPMYGEIESLNVSV 249 Query: 268 AAAVALYITQNH 279 + V LY Sbjct: 250 STGVILYEAIRQ 261 >gi|76809686|ref|YP_333959.1| RNA methyltransferase [Burkholderia pseudomallei 1710b] gi|76579139|gb|ABA48614.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1710b] Length = 281 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 60/264 (22%), Positives = 106/264 (40%), Gaps = 7/264 (2%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 DS A R++ YK++++ + + E L G H SA L+ + + T Sbjct: 18 DSMKAITSRDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCV-VTDG 76 Query: 77 ALARLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 ALA + + P + V P + + GL L A V + ++ Sbjct: 77 ALAHEEARGIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVARPAPALPARVAGTSVV 136 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + D V D N+G+ILRSA A + + + + S+ + +SA GA + + Sbjct: 137 L--DGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDA 194 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 ++ S + + +A + G EG G+ + +E AT + Sbjct: 195 GTLIE---RLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIP 251 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 PG +++LNV+ AAAV L+ Sbjct: 252 QPGGMESLNVAAAAAVCLFEQCRQ 275 >gi|254247898|ref|ZP_04941219.1| rRNA methylases [Burkholderia cenocepacia PC184] gi|124872674|gb|EAY64390.1| rRNA methylases [Burkholderia cenocepacia PC184] Length = 260 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 103/257 (40%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ YK++++ + H + L G H SA L+ + + T+ AL + Sbjct: 6 SRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGATPELCV-TTEGALGLAEA 64 Query: 84 DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A + + V P + + G L P + V ++ +++ D V Sbjct: 65 QAIVARIDAQRIVTLPNALFGQLSNVVNGVGFLLLVDRPAHPLPERVTHTSVVL--DGVQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA A + + + S+ + +S GA + +++ Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEAEALAERL 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 T + + + + +A + G EG G+ ++ AT + PG +++ Sbjct: 183 DVPVALTDSHGAQAVYDCD---LSGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ AAAV L+ Sbjct: 240 LNVAAAAAVCLFEQVRQ 256 >gi|307274059|ref|ZP_07555269.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0855] gi|306509367|gb|EFM78427.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0855] Length = 285 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 71/284 (25%), Positives = 113/284 (39%), Gaps = 12/284 (4%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65 K+EK K R + R ++ + E F++G H AL Sbjct: 2 KNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGR 61 Query: 66 -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 K+F + A PVK VP +D + VHQG+ L Sbjct: 62 GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTMSDH-GVHQGMVLAITAYQYL 120 Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 TL+ + ++LD + DPHN G+ILR+A A DGII K + + + Sbjct: 121 TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA+EHIP R++ L ++ + F G IALI+G EG Sbjct: 181 KASTGAVEHIPVARVTKLAQSIATLKENQFWIFGTDMSGTDYRRWNT-QGAIALIIGNEG 239 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +G+ + + + M G +++LN AA + +Y Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGRN 283 >gi|261492875|ref|ZP_05989421.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496775|ref|ZP_05993150.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307614|gb|EEY08942.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311416|gb|EEY12573.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 247 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 108/238 (45%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A +N ++ ++L K RL N ++ V QT+D Sbjct: 5 IYGIHAVKAFWDNAPERLIEVLVLKGREDKRLMPLLNELQRLGVAIQQVNRQTLDNKSQG 64 Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E +A D + + + LL++LD V DPHN+GA LR+A A D + Sbjct: 65 EVHQGIIARVVPQKELNEHDLEAILSQKKNPLLLILDGVTDPHNLGACLRTADAAGVDAV 124 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LE 221 I K S + K A GA E +P IR++NL ++ + I ++ + + Sbjct: 125 IVPKDKSAQLTPTARKVACGAAEVMPLIRVTNLARTMRDLQERHNVWIVGTAGEAESGIY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + IAL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 185 EAKLTGSIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 242 >gi|327188566|gb|EGE55776.1| rRNA methylase protein [Rhizobium etli CNPAF512] Length = 286 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 94/258 (36%), Gaps = 6/258 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K +++ K + + G+ V A+ I L+ K A + + Sbjct: 24 NPIIKDIKALTNK-KSREESGTFLAEGLKLVIDAIELGWT-IRTLVYAKAAKGKPLVEQM 81 Query: 87 LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 V V + I I ++ + + R + + LD V Sbjct: 82 AAKTVASGGLVLEVSEKVIGSITRRDNPQMVVGIFDQRWKPLKDIRPREGETWVALDRVR 141 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+A A G+I + S ++ G++ +P R + + Sbjct: 142 DPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVARATPEEFLAWRK 201 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + + + + + + L++G E GL + + A ++A + G + Sbjct: 202 SAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQLAKEADALARIPQQGRADS 261 Query: 263 LNVSNAAAVALYITQNHF 280 LN++ A AV L+ + H Sbjct: 262 LNLAVATAVMLFEARRHL 279 >gi|257084050|ref|ZP_05578411.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1] gi|256992080|gb|EEU79382.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1] Length = 285 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 72/284 (25%), Positives = 114/284 (40%), Gaps = 12/284 (4%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65 K+EK K R + R ++ + E F++G H AL Sbjct: 2 KNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGR 61 Query: 66 -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 K+F + A PVK VP +D + VHQG+ L Sbjct: 62 GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTMSDH-GVHQGMVLAITAYQYL 120 Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 TL+ + ++LD + DPHN G+ILR+A A DGII K + + + Sbjct: 121 TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA+EHIP R++NL ++ + F G IALI+G EG Sbjct: 181 KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYRSWNT-QGAIALIIGNEG 239 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +G+ + + + M G +++LN AA + +Y Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGRN 283 >gi|88607795|ref|YP_504889.1| RNA methyltransferase [Anaplasma phagocytophilum HZ] gi|88598858|gb|ABD44328.1| RNA methyltransferase, TrmH family, group 3 [Anaplasma phagocytophilum HZ] Length = 258 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 14/247 (5%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQ 99 L++YG H +AL NP+R +LL T + + D L ++ V Sbjct: 3 RIKDNRYLWIYGKHACLSALKNPNRVCIELLITHKFIDKNDPVIKLAKNRKIGIRDVEIA 62 Query: 100 TIDKIVGKEAVHQGLALET------------APLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 ID +VG +A+HQG+ L+ + ++VLD V D HN+ Sbjct: 63 KIDSLVGSKAIHQGMLLKVLPLFGRNASSLIRIEDIVAQTEAAPTSTILVLDEVTDVHNV 122 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA+LR+A F+ D ++ T+ SPSES +AK++SGA++ +P + I NL L+ + + Sbjct: 123 GAVLRTAACFNVDAVVLTEHNSPSESCGMAKASSGAIDIVPVVCIGNLVKTLEYLKQKNY 182 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G + L Q +++ +ILGAEGKG+R T++ + + M +++LNVSN Sbjct: 183 WCYGFDASGGTCLHQVEFSERRVVILGAEGKGMRHLTKKHCDHLVKIPMSEKMESLNVSN 242 Query: 268 AAAVALY 274 AAA+A+Y Sbjct: 243 AAAIAMY 249 >gi|308070995|ref|YP_003872600.1| tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681] gi|305860274|gb|ADM72062.1| Hypothetical tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681] Length = 248 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 115/245 (46%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDK 103 E ++ G H+V+ AL + R I ++ NA L V V + +D+ Sbjct: 2 EEEWIAGKHSVTEALRSG-RTINKIWIADNAQKHLTLPITAEAKKAGIIVLQVDKRKLDQ 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 +V HQG+ + AP ++ L++LD + DPHN+G+ILR+A Sbjct: 61 MVPGI-QHQGVVAQAAPFAYVEVEELLATARDKGEEPFLILLDEIEDPHNLGSILRTADC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I KR S + + ++K+++GA+E++P R++NL + ++ G +G + Sbjct: 120 TGAHGVIVPKRRSAAVTVTVSKTSAGAVEYVPVARVNNLGQTIDRLKEEGVWVVGTDVTA 179 Query: 217 KKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 P+ + +A+++G E KG+ +E + L M G I +LN S AA V +Y Sbjct: 180 TDPVFGNGVFTGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGQINSLNASVAAGVVMYE 239 Query: 276 TQNHF 280 Sbjct: 240 VLRGR 244 >gi|190890065|ref|YP_001976607.1| rRNA methylase [Rhizobium etli CIAT 652] gi|190695344|gb|ACE89429.1| rRNA methylase protein [Rhizobium etli CIAT 652] Length = 286 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 94/258 (36%), Gaps = 6/258 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K +++ K + + G+ V A+ I L+ K A + + Sbjct: 24 NPIIKDIKALTNK-KSREESGTFLAEGLKLVIDAIELGWT-IRTLVYAKAAKGKPLVEQM 81 Query: 87 LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 V V + I I +E + + R + + LD V Sbjct: 82 AAKTVASGGLVLEVSEKVIGSITRRENPQMVVGIFDQRWKPLKDIRPREGETWVALDRVR 141 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+A A G+I + S ++ G++ +P R + + Sbjct: 142 DPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVARATPEEFLAWRK 201 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + + + + + + L++G E GL + + A ++A + G + Sbjct: 202 SAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQLAKEADALARIPQQGRADS 261 Query: 263 LNVSNAAAVALYITQNHF 280 LN++ A AV L+ + H Sbjct: 262 LNLAVATAVMLFEARRHL 279 >gi|120406285|ref|YP_956114.1| RNA methyltransferase [Mycobacterium vanbaalenii PYR-1] gi|254806469|sp|A1TG08|Y5337_MYCVP RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mvan_5337 gi|119959103|gb|ABM16108.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium vanbaalenii PYR-1] Length = 314 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 71/272 (26%), Positives = 122/272 (44%), Gaps = 13/272 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP--SRKIFQLLATK- 75 A R +H K+ ++++ + + + G + V L + ++ L Sbjct: 41 AHQRPHHPAGKRAAKAARQAQGRHKKTDDTEIVLGRNPVLECLRAGVPATALYVALGADS 100 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------- 128 + + VP +D+I +HQG+AL+ P D Sbjct: 101 DERLTESVQIAADKGIAILEVPRHDLDRIAA-NGMHQGIALQVPPYNYAHPDDLLAEAKS 159 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA P Sbjct: 160 DAMPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARTP 219 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R +NLT AL++ G Q +GL +D ++Q I +++G+EGKGL +E Sbjct: 220 VARATNLTRALKQWADAGLQVVGLDADGDTTVDQIDGAGPIVVVVGSEGKGLSRLVRENC 279 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + M G ++LN S AA V L Sbjct: 280 DAVVSIPMAGPTESLNASVAAGVVLAEIARQR 311 >gi|325103518|ref|YP_004273172.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter saltans DSM 12145] gi|324972366|gb|ADY51350.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter saltans DSM 12145] Length = 255 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 56/258 (21%), Positives = 108/258 (41%), Gaps = 14/258 (5%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPH 89 MQ N K + + + ++G+ V A+ I L + + Sbjct: 1 MQDRNFKRQEPRESNQM-IFGIRAVIEAIKAGKD-IESLFIQRGLTGGIYTELKTLLREF 58 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVN 142 P + VP + +++I HQG+ +P+ ++ + L+++LD++ Sbjct: 59 DIPSQQVPVEKLNRITA--KNHQGVIAFISPITYQKIEDIIPQVYEKGETPLILILDNIT 116 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N GAI R+A I+ KR + + K+++GAL +P R +L L+ + Sbjct: 117 DVRNFGAIARTAECSGVHAIVIPKRGAAQINPDAVKTSAGALYKVPVCRHDSLLQILRFL 176 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G Q + + + + + A+I+GAE G+ + + + + M G I++ Sbjct: 177 KDSGLQIVSCTEKTDDLIYKPDYTVPTAVIMGAEDTGISFELIRNSDYLTKIPMAGEIES 236 Query: 263 LNVSNAAAVALYITQNHF 280 LNVS +A + LY Sbjct: 237 LNVSVSAGIILYEAVRQR 254 >gi|307729346|ref|YP_003906570.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1003] gi|307583881|gb|ADN57279.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1003] Length = 262 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 109/262 (41%), Gaps = 7/262 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + + L G H SA L+ + + T+ AL Sbjct: 2 KAITSRDNPLYKRLKALAGSTHQQRRSGHALLEGFHLASAYLDAAGQPEMCV-VTEGALR 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G+ L L +P + V + +++ Sbjct: 61 HDEAQAIVSRIDSQRIVTLPDALFGQLSNVVHGVGMLLLVEKLDTPLPETVGQTCIVL-- 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +S GA + + Sbjct: 119 DGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDVDAQTL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++++ T +++ + + ++A + G EG G+ ++ + + PG Sbjct: 179 IERLAVPVVITDSHGAEAIYDCD---LSGELAWVFGNEGAGVSQAWRDAVSLRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNHF 280 +++LNV+ AAAV ++ Sbjct: 236 GMESLNVAAAAAVCMFEQCRQR 257 >gi|194289992|ref|YP_002005899.1| 23S rRNA (guanosine-2'-o-)-methyltransferase rlmb (23S rRNA gm2251 2'-o-methyltransferase) [Cupriavidus taiwanensis LMG 19424] gi|193223827|emb|CAQ69834.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Cupriavidus taiwanensis LMG 19424] Length = 247 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 109/238 (45%), Gaps = 7/238 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 L G H V+A L + + + R D + V + + + G Sbjct: 6 LLIGFHAVTARLRQDPKGVSDIYIESARRDRRMQDFVRLAESLGVRLHPVDAERLRGMAG 65 Query: 107 KEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A L LD + + LL+VLD V DPHN+GA LR A + Sbjct: 66 TDRHQGVVARAEDVALALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADGAGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A +AK ASGA E +PYI ++NL L+++ G IG + ++K L Sbjct: 126 IAPKDRSVGLNATVAKVASGAAETVPYITVTNLARTLRELQERGIWVIGTADGTEKSLYD 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A+++GAEG+G+R T+ET + + M G +++LNVS A+ V LY Sbjct: 186 IDFKGPTAIVMGAEGEGMRRLTRETCDELVGIPMAGGVESLNVSVASGVCLYEAVRQR 243 >gi|163749298|ref|ZP_02156547.1| RNA methyltransferase, TrmH family, group 3 [Shewanella benthica KT99] gi|161331017|gb|EDQ01943.1| RNA methyltransferase, TrmH family, group 3 [Shewanella benthica KT99] Length = 251 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 109/249 (43%), Gaps = 15/249 (6%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102 + +G+H V A L ++ +L + + ++ + V+ + +D Sbjct: 2 KKQDITFGIHAVEAVLKYSPERVIELWVLQGRDDKRFMPILESAAEYGISVQHATRKVLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-----------VRNSQLLMVLDHVNDPHNIGAIL 151 HQG+ + + L++LD V DPHN+GA L Sbjct: 62 DKSD-GGQHQGVIARVKAVKQLNDKDLAVLLDKIEVEKTETPFLLILDGVTDPHNLGACL 120 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A G+I + S + ++K A GA E +P +++NL ++ + G +G Sbjct: 121 RNADAAGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKSLQDKGIWIVG 180 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + ++++ L + +A+ +G+E KGLR T+E+ S+ + M G + +LNVS A V Sbjct: 181 AAGEAEQDLYKADLKGSLAIAMGSEDKGLRRLTRESCDSLVSIPMTGSVSSLNVSVATGV 240 Query: 272 ALYITQNHF 280 L+ Sbjct: 241 CLFEAVRQR 249 >gi|154484294|ref|ZP_02026742.1| hypothetical protein EUBVEN_02007 [Eubacterium ventriosum ATCC 27560] gi|149734771|gb|EDM50688.1| hypothetical protein EUBVEN_02007 [Eubacterium ventriosum ATCC 27560] Length = 255 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 95/256 (37%), Gaps = 10/256 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ KK+ +KS+ + G P+ + + ++ L Sbjct: 7 SNEQIKKLIQLKEKSKVRKTTGTFTVEGKKMFVEI---PAEDLVSVYVSETFLKENGELV 63 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + V Q KI + ++ + + ++VLD + Sbjct: 64 KEKK---YQIVSDQVFKKISDTVTPQGIVAVVKQKSYSIDYIIEKRNKEKSCIVVLDRLQ 120 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+ A GII +K + + + +S G++ +P+ + +L A+ + Sbjct: 121 DPGNMGTIVRTGEAAGISGIIMSKDSADIYNPKVIRSTMGSIFRVPFAIVDDLAAAVDTL 180 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G T + AL++G E +GL + A + + M G +++ Sbjct: 181 KDNGITTYAAHLKGELYNSGS-LTKDCALLIGNEARGLSEEISAKADKLIKIPMHGKVES 239 Query: 263 LNVSNAAAVALYITQN 278 LN + A A+ +Y Sbjct: 240 LNAAIATAILMYEAAR 255 >gi|167036782|ref|YP_001664360.1| RNA methyltransferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115204|ref|YP_004185363.1| TrmH family RNA methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855616|gb|ABY94024.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928295|gb|ADV78980.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 247 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 115/244 (47%), Gaps = 9/244 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103 E ++G + V A+ + I ++ +K A + N V T T+ K Sbjct: 2 EEQNVIFGRNPVIEAIKSGKE-IEKIYVSKTAGGNISKIINFAKEAGIVVSTTDNDTLSK 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + G + +AL D + L++LD + DPHN+GAI+RSA AF Sbjct: 61 LAGSQNHQGVVALSAVYKYFEVDDLLEYAEQKKEKPFLLILDEITDPHNLGAIIRSAEAF 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A + K+++GA+EH+ ++SN+ + ++ + G +G +++ Sbjct: 121 GVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSNINNTIRDLKERGLWIVGTDVNAE 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K E+ + +A ++G EGKG+ + + + M G I +LN S AA++ +Y Sbjct: 181 KSFEELNYDFPVAFVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQVV 240 Query: 278 NHFA 281 + Sbjct: 241 SKRK 244 >gi|304414079|ref|ZP_07395447.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Regiella insecticola LSR1] gi|304283293|gb|EFL91689.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Regiella insecticola LSR1] Length = 251 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 109/245 (44%), Gaps = 12/245 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIV 105 +YG+H V A L ++ ++ K+ R V+ Q +D V Sbjct: 3 EMIYGIHAVKALLEKEPHRLLEIFLQKDRHDRRLRSLISAIESEGLQVQMAKRQWLDNQV 62 Query: 106 GKEAVHQGLALETAPLLSPTLD---------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 E +A D A + LL++LD V DPHN+GA LRSA A Sbjct: 63 NHEVHQGIVAKIRQGRQYQENDLLQLVEKLLADKKDPLLLILDGVTDPHNLGACLRSADA 122 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K +S +A + K ASGA E +P I ++NL L+ + +G + D+ Sbjct: 123 AGVHAVIVPKDHSAPLNATVKKVASGAAETVPLIVVTNLARTLRLLKEHNIWIVGTAGDA 182 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ L Q +AL++G+EG+G+R T+E + + + G + +LNVS A V L+ Sbjct: 183 EQNLYQWKIQQSMALVMGSEGQGMRRLTREHCDELISIPLAGSVSSLNVSVATGVCLFEV 242 Query: 277 QNHFA 281 Sbjct: 243 TRQRN 247 >gi|300767192|ref|ZP_07077104.1| TrmH family RNA methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495011|gb|EFK30167.1| TrmH family RNA methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 255 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 55/269 (20%), Positives = 95/269 (35%), Gaps = 15/269 (5%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 EKI SL+++H K + K + Q L G H V+ A+ Sbjct: 2 EKINSLQNAH----------VKAWKKLQTK-KGRKQQGQYLLDGWHLVNEAVKAHVAIQT 50 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 L+ K +L + +L H V + + I AL T P L + Sbjct: 51 LLITAK----QLATEPDLTHFPAVIEISDEVAKHISATVTPQGVFALATLPAAIEDLSQL 106 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++ ++LD+V DP NIG ++R+A A G+ + ++ G+ H+ Sbjct: 107 DLTRPWLLLDNVQDPGNIGTMVRTADAAGFAGVAFGTGTVDIHQPKVERAMQGSQFHLQL 166 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I Q + LI+G EG G+ + Sbjct: 167 ISTDLDKLVDQLQAQGSPVYGSELNPQAARYLDIDAPASFGLIMGNEGNGMSRELLARTD 226 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ + G ++LNV+ AA V ++ Sbjct: 227 QNLYIPIKGQAESLNVAVAAGVLMFGLYR 255 >gi|221215472|ref|ZP_03588436.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD1] gi|221164656|gb|EED97138.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD1] Length = 260 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 99/261 (37%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + H + L G H SA L+ + + AT+ AL Sbjct: 2 KAITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGAIPELCV-ATEGALG 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G L P V ++ +++ Sbjct: 61 HAEAQAIVARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPSQPLPARVAHTSVVL-- 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + ++ GA + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRAGMGAHFVLSIHEDVAP--- 175 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 S + + + +A + G EG G+ ++ A + PG Sbjct: 176 DALAARLDVPVALTDSHGAQAIYDCDLSQPVAWVFGNEGAGVSAFWRDIAAHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQVRQ 256 >gi|28378262|ref|NP_785154.1| rRNA methylase [Lactobacillus plantarum WCFS1] gi|254556469|ref|YP_003062886.1| rRNA methylase [Lactobacillus plantarum JDM1] gi|308180411|ref|YP_003924539.1| rRNA methylase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271097|emb|CAD64002.1| rRNA methylase [Lactobacillus plantarum WCFS1] gi|254045396|gb|ACT62189.1| rRNA methylase [Lactobacillus plantarum JDM1] gi|308045902|gb|ADN98445.1| rRNA methylase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 257 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 55/269 (20%), Positives = 95/269 (35%), Gaps = 15/269 (5%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 EKI SL+++H K + K + Q L G H V+ A+ Sbjct: 4 EKINSLQNAH----------VKAWKKLQTK-KGRKQQGQYLLDGWHLVNEAVKAHVAIQT 52 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 L+ K +L + +L H V + + I AL T P L + Sbjct: 53 LLITAK----QLATEPDLTHFPAVIEISDEVAKHISATVTPQGVFALATLPAAIEDLSQL 108 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++ ++LD+V DP NIG ++R+A A G+ + ++ G+ H+ Sbjct: 109 DLTRPWLLLDNVQDPGNIGTMVRTADAAGFAGVAFGTGTVDIHQPKVERAMQGSQFHLQL 168 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I Q + LI+G EG G+ + Sbjct: 169 ISTDLDKLVDQLQAQGSPVYGSELNPQAARYLDIDAPASFGLIMGNEGNGMSRELLARTD 228 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ + G ++LNV+ AA V ++ Sbjct: 229 QNLYIPIKGQAESLNVAVAAGVLMFGLYR 257 >gi|107022620|ref|YP_620947.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia AU 1054] gi|116689569|ref|YP_835192.1| RNA methyltransferase [Burkholderia cenocepacia HI2424] gi|105892809|gb|ABF75974.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia cenocepacia AU 1054] gi|116647658|gb|ABK08299.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia cenocepacia HI2424] Length = 247 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 117/239 (48%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + + + ++L + R D A + + + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + S LD + LL+VLD V DPHN+GA LR A + Sbjct: 66 TER-HQGVVARVEDMPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S ++ L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|332982727|ref|YP_004464168.1| TrmH family RNA methyltransferase [Mahella australiensis 50-1 BON] gi|332700405|gb|AEE97346.1| RNA methyltransferase, TrmH family, group 3 [Mahella australiensis 50-1 BON] Length = 249 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 102/245 (41%), Gaps = 13/245 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102 ++ + G + V AL + R I + + + V+ + +D Sbjct: 5 KDSDIIEGRNPVIEALKSG-RLIKIIYIAAGSRGKTVDCIKSLAQSRGISVQEIERVQLD 63 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155 K HQG+ AP ++ +++LD + DPHN+GAI+R+A Sbjct: 64 KRSA-TGAHQGVVAYVAPYTYAQIEDILEAAAQKHQDPFVLLLDGITDPHNMGAIIRTAE 122 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 GII K S +A + K+++GA+E+I ++N+ ++++ G + Sbjct: 123 CMGAHGIIIPKDRSIGITAAVVKASAGAVEYIHIAAVTNMAQTVERLKKDGLWI-MGADM 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +P I LI+G EG G+R +E + + M G I +LN S AA + +Y Sbjct: 182 RGRPCRSMDLKGPIGLIIGGEGSGIRRLVKEKCDVLLSIPMSGHIASLNASVAAGMLMYE 241 Query: 276 TQNHF 280 Sbjct: 242 ISMQR 246 >gi|20808679|ref|NP_623850.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] gi|20517315|gb|AAM25454.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] Length = 247 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 112/239 (46%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGK 107 +YG + V A+ + I ++ +K A + V T T+ ++ Sbjct: 6 IIYGRNPVIEAIRSGKE-IEKIYVSKTAGGNISKIIGMAKEAGIVVSTADSDTLKRLAQT 64 Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +A+ D + L++LD + DPHN+GAI+RSA AF G Sbjct: 65 PNHQGVVAVGALYKYFDVTDILNYAEEKKEKPFLLILDEITDPHNMGAIIRSAEAFGVHG 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR S +A + K+++GA+E+I ++SN+ ++ + G IG + ++K E Sbjct: 125 VIIPKRRSAGINATVVKASAGAVEYIKVAKVSNINSTIRDLKEKGLWIIGTDAKAEKSFE 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +AL++G+EGKG+ E + + M G I +LN S AA++ +Y + Sbjct: 185 ELDYDFPLALVIGSEGKGISRLVLENCDFVIKIPMKGKINSLNASVAASILMYNILSKR 243 >gi|329114437|ref|ZP_08243199.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acetobacter pomorum DM001] gi|326696513|gb|EGE48192.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acetobacter pomorum DM001] Length = 318 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 101/264 (38%), Positives = 142/264 (53%), Gaps = 9/264 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQ------PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 R R + + S + +L+G H V+AALNNP R +LL T+ Sbjct: 40 RQPRHGRSARRPRVSSAGGREGAPSAPAGTCWLFGTHAVAAALNNPRRVYERLLVTEENH 99 Query: 79 ARLDWDANLPHPFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLL 135 L+ V + V Q +D ++G +AVHQG+AL L LD + Sbjct: 100 PALEEATRSGRNVRVTPELVQRQRLDDLLGPDAVHQGVALLARILPPMPLDEALERPGPV 159 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD V DP NIGAILRSA AF ++ R +P E+AVLAK+ASGALE +P +R NL Sbjct: 160 LVLDQVTDPRNIGAILRSAAAFGAACLVVQDRNAPEETAVLAKAASGALETVPMVREVNL 219 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + A++++ G T+GL + ++AL+LGAEGKGLR T+E+ +A L+ Sbjct: 220 SRAIEQLQKAGCWTVGLDAGGTTLDGASFDGRRVALVLGAEGKGLRRLTRESCDEIAGLY 279 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 MPG +++LNVS AAAV LY Sbjct: 280 MPGEMESLNVSVAAAVGLYELMRR 303 >gi|291537396|emb|CBL10508.1| rRNA methylases [Roseburia intestinalis M50/1] Length = 281 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 93/277 (33%), Gaps = 25/277 (9%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL------------- 72 +++ K + +K++ ++ G A P + Q+ Sbjct: 6 SNQQMKNLTLLMKKAKARNEQGVFVAEGRKMFLEA---PVEWVKQVYVSESFYGTCTQGN 62 Query: 73 ---ATKNALARLDWD------ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 ++ + + + + V + + L + P + Sbjct: 63 MQDCMESCTPKHGEEKLNRKVLERLNETGYEIVSDNVFKSVSDTQTPQGILCVIKKPEYA 122 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 L++L+ + DP N+G ++R+ G+I + + +S G+ Sbjct: 123 LEEMLKGEQTHLLILESIQDPGNLGTMVRTGEGAGITGVIMNQTTVDLFNPKTIRSTMGS 182 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + +P+ +L + + ++ K A ++G EG GL + Sbjct: 183 IYRVPFFVTKDLPGTISSLKEQQVNVYAAHLKGMLSYDEPDYKKKTAFLIGNEGNGLSDE 242 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + + M G +++LN + +A++ +Y T Sbjct: 243 IADLADTYIKIPMQGQVESLNAAISASLLMYETGRQR 279 >gi|289648619|ref|ZP_06479962.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 2250] Length = 252 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 9/239 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ + + R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDARVQTLVALAGENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P LD S LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Q Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ + Sbjct: 187 QDLTGPT-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 244 >gi|291541741|emb|CBL14851.1| rRNA methylase, putative, group 3 [Ruminococcus bromii L2-63] Length = 252 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 105/246 (42%), Gaps = 13/246 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTI 101 + + + G + VS A+ + R I ++L K + PVK V + Sbjct: 10 EQKPDVIAGRNPVSEAVRSN-RPIDKILVAKGEKSGAIVGILAKARDKKIPVKEVDRTKL 68 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSA 154 D + G A HQG+ A T+D + ++VLD V DPHN+GAI+R+A Sbjct: 69 DYVSG-GATHQGIVAFAAAKDYSTVDDILEYAESRGEAPFVVVLDEVEDPHNLGAIIRTA 127 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 GII KR S S +AK+++GA+E+ + + + Sbjct: 128 ECAGVHGIIIPKRRSAGLSYTVAKASAGAIEY-MRVARVTNIAVTLDELKEKGVWVYGAD 186 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + A+++G EGKG+ +E +A L M G I +LN S AA + +Y Sbjct: 187 MDGTDYDECDFSGACAIVIGNEGKGISRLVREKCDVIASLPMKGQINSLNASVAAGILMY 246 Query: 275 ITQNHF 280 + Sbjct: 247 KAMKNR 252 >gi|227501072|ref|ZP_03931121.1| tRNA/rRNA methyltransferase [Anaerococcus tetradius ATCC 35098] gi|227216845|gb|EEI82243.1| tRNA/rRNA methyltransferase [Anaerococcus tetradius ATCC 35098] Length = 234 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 122/231 (52%), Gaps = 6/231 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG V +L+ KI++ K + L + V + DKI + Sbjct: 4 IYGRKPVLDSLDTDI-KIYKAYIQKQNSKLVDTIIKKLEEKNIEISFVDKRFFDKI---D 59 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG+ LE T+D V+++ L++LD + DPHN+GAI+RSA +F DG+I +R Sbjct: 60 MNHQGVMLEVESFKYATMDDVKDANRLIILDKIEDPHNLGAIIRSAESFGFDGVIIPERR 119 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S S ++ + K+++GA+ +I IR++NLT ++ + GF GL+ ++ + + K Sbjct: 120 SASVTSTVYKTSAGAINNIKVIRVTNLTRTIKDLKDMGFWIYGLAGEADSDISKADLKGK 179 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L++G EG+G+ +E + ++ M G + +LN S AA +++Y Sbjct: 180 VTLVIGNEGEGISRLVRENCDMLINIPMLGKVNSLNASVAAGISMYELLRQ 230 >gi|227872479|ref|ZP_03990819.1| possible RNA methyltransferase [Oribacterium sinus F0268] gi|227841680|gb|EEJ51970.1| possible RNA methyltransferase [Oribacterium sinus F0268] Length = 260 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 103/261 (39%), Gaps = 9/261 (3%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 + ++ K+++ +K++ + G + L+ P+ + QL ++ Sbjct: 2 HRIESPHNEGLKEIRELTKKAKKRWEKGMFVAEGERLL---LDLPASSLLQLYVQEDYKG 58 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 L + + + ++ I E LL L ++L+ Sbjct: 59 ALPRGIEK-EDSRICILSKKAMESISTTEH-----GQGILGLLRFPKKEKPKGDLFLILE 112 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 ++ DP N+G + R+A A + I ++ S + +S G+L +P+ +L Sbjct: 113 NIQDPGNLGTLFRTAEAAGVNHIFLSRNTVDPFSPKVVRSTMGSLFRLPFSIEEDLFFLC 172 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + + S G Q L D KK Q A + G EG GL + + AT + M G Sbjct: 173 ESLKSAGVQVFALDLDGKKTHFQAAFQGPSAFLFGNEGNGLTKELSQCATEKLLIPMEGK 232 Query: 260 IKALNVSNAAAVALYITQNHF 280 I++LNV+ +A++ LY Sbjct: 233 IESLNVATSASIVLYEAVRQR 253 >gi|161524445|ref|YP_001579457.1| tRNA/rRNA methyltransferase SpoU [Burkholderia multivorans ATCC 17616] gi|189350800|ref|YP_001946428.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|160341874|gb|ABX14960.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia multivorans ATCC 17616] gi|189334822|dbj|BAG43892.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC 17616] Length = 260 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 99/261 (37%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + H + L G H SA L+ + + AT+ AL Sbjct: 2 KAITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGAIPELCV-ATEGALG 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G L P V ++ +++ Sbjct: 61 HAEAQAIVARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPSQPLPARVAHTSVVL-- 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + ++ GA + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRAGMGAHFLLSIHEDVAP--- 175 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 S + + + +A + G EG G+ ++ A + PG Sbjct: 176 DALAARLDVPVALTDSHGAQAIYDCDLSQPVAWVFGNEGAGVSAFWRDIAAHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQVRQ 256 >gi|172041345|ref|YP_001801059.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] gi|171852649|emb|CAQ05625.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] Length = 317 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 65/277 (23%), Positives = 118/277 (42%), Gaps = 15/277 (5%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPSRKIFQLLAT 74 + + H+ K Q + N + G + V L+ L Sbjct: 38 KAEDRVYHQAHKRKKAAQRRASGAHDRRDAFGGNELVVGRNPVVECLHAN-VPASALYVA 96 Query: 75 KN--ALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-- 128 + RL ++ V V Q +D++ G +HQG+ L+ P + Sbjct: 97 EGTGNDDRLSEAVHICSSRGISVLEVSRQELDRMTG-NGLHQGIGLQIPPYKYADVHDLI 155 Query: 129 -----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 L++ LD++ DP N+GA++RS AF G++ +R S S +AV ++++G Sbjct: 156 ERAADSATPGLVVALDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVTWRTSAGT 215 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 +P + +N+ AL++ G+Q +GL + + L+ +++G+EGKGL Sbjct: 216 AARLPVAKATNMVRALKQFQQNGYQVVGLDAGGEHTLDTYDGTTPTVVVVGSEGKGLSRL 275 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ETA ++ + M +++LN S AA V L Sbjct: 276 VGETADTILSIPMADKVESLNASVAAGVVLSEFARQR 312 >gi|227890806|ref|ZP_04008611.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741] gi|227867215|gb|EEJ74636.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741] Length = 253 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 98/253 (38%), Gaps = 6/253 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K+ + N K + + L G+H V AL + L+ +K + Sbjct: 7 SNSRVKEWKKLNTK-KGRKKQNKYILDGLHLVKEALKANKKVEELLITSK---FEHLNEI 62 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 +P V + + I + QG+ + ++ ++LD V DP Sbjct: 63 EIPDETKVIMISKEVSKSISETQ-TPQGIFGIVSIEEEKITYPQKDVGAWLMLDGVQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIG ++R+A A G+I + + + + ++ G+ HI I + Sbjct: 122 NIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIKVINDNLSGWIRHFKDMK 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 ++ + ++ AL++G EG G+ + E + ++ + ++LNV Sbjct: 182 VPVFGSELNEHAREYTNVGQHTDFALVMGNEGNGISKEILEMTSINLYIPIT-NAESLNV 240 Query: 266 SNAAAVALYITQN 278 + AA + ++ + Sbjct: 241 AVAAGILMFALKK 253 >gi|78066783|ref|YP_369552.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. 383] gi|77967528|gb|ABB08908.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. 383] Length = 260 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 102/257 (39%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ YK++++ + H + L G H SA L+ + + T+ AL + Sbjct: 6 SRDNPLYKRLKALAGSTSHQRRGGQALLEGFHLASAYLDTGATPELCV-TTEGALGHAEA 64 Query: 84 DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A + + V P + + G L + P V S +++ D V Sbjct: 65 QAIVARVDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPVQPLPARVTQSSVVL--DGVQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA A + + + S+ + +S GA + +++ Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEAGALAERL 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 T + + + + +A + G EG G+ ++ AT + PG +++ Sbjct: 183 DVPVALTDSHGAQAVYDCD---LSGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ AAAV L+ Sbjct: 240 LNVAAAAAVCLFEQVRQ 256 >gi|269925979|ref|YP_003322602.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC BAA-798] gi|269789639|gb|ACZ41780.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC BAA-798] Length = 266 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 50/263 (19%), Positives = 95/263 (36%), Gaps = 7/263 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL----LATKNALA 79 R++ K ++ + + Q ++ G+ V +A F + L Sbjct: 6 SRDNTKIKILRKL-RSRKFREQSGLCYVEGIRQVYSAFEEGFHFEFLIVSSDLLRSEHAW 64 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 +L D + + V V I ++ + S R L+ L Sbjct: 65 KLVNDL-ISNGVQVIDVDQNIFKSISLRDNPQGIAGVVRQKWHSLESIDPREGLCLLALK 123 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP NIG+ILR+A A +I ++ +GA + I+ S L Sbjct: 124 AVQDPGNIGSILRTADAVGVRYVILLGDSVDPYDPNSVRAGAGATFTVKLIKTSFE-RLL 182 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + IG + + L++G+E +GL + Q + + + M G Sbjct: 183 DWKNIHQIPVIGAVGGAPLNYSRVNYPYPCILLMGSERQGLDLREQSSCDMLVSVPMVGK 242 Query: 260 IKALNVSNAAAVALYITQNHFAK 282 + +LN++ A +V LY + ++ Sbjct: 243 VDSLNLAVATSVILYEIFDQRSR 265 >gi|317507828|ref|ZP_07965529.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974] gi|316253870|gb|EFV13239.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974] Length = 297 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 69/256 (26%), Positives = 120/256 (46%), Gaps = 15/256 (5%) Query: 39 KSRHTSQPEN----LFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLP--HPF 91 KSR + + ++ G + V L + L+A+ +A R+ L Sbjct: 39 KSRARAVKQAADAPEWVLGRNPVFECLRAKVPAVELLVASGIDADERVAESVRLAGNAGV 98 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDP 144 PV V +D+ A HQG+ L+ P + L++ LDH++DP Sbjct: 99 PVTEVARFELDRRSS-GAPHQGIGLKVKPYEYRHPADLLVEAEDSGRPALMVALDHISDP 157 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GA++RSA AF G++ R S S +A+ ++++GA +P + NLT L++ Sbjct: 158 RNLGAVIRSAAAFGGHGVLIPNRRSASLTAIAWRTSAGAAARLPVAQAPNLTRTLKEWQD 217 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G +GL ++ L+ + + +AL++G+EGKGL +E+ + + M G +++LN Sbjct: 218 RGLLLVGLDAEGDTSLDDFVGTEPLALVVGSEGKGLSRLVRESCDVVVSIPMSGQVESLN 277 Query: 265 VSNAAAVALYITQNHF 280 VS A V L Sbjct: 278 VSVATGVVLGEIARQR 293 >gi|167039502|ref|YP_001662487.1| RNA methyltransferase [Thermoanaerobacter sp. X514] gi|300915248|ref|ZP_07132563.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp. X561] gi|307725172|ref|YP_003904923.1| TrmH family RNA methyltransferase [Thermoanaerobacter sp. X513] gi|166853742|gb|ABY92151.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp. X514] gi|300888972|gb|EFK84119.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp. X561] gi|307582233|gb|ADN55632.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp. X513] Length = 247 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 118/245 (48%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103 E ++G + V A+ + I ++ +K A + N V T T+ + Sbjct: 2 EEQNVIFGRNPVIEAIKSGKE-IEKIYVSKTAGGNISKIINFAKEAGIVVSTTDNDTLSE 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + G HQG+ +A +D + L++LD + DPHN+GAI+RSA A Sbjct: 61 LAG-SRNHQGVVALSAVYKYFEVDDLLEYAEQKKEKPFLLILDEITDPHNLGAIIRSAEA 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F GII KR + +A + K+++GA+EH+ ++SN+ + ++ + G +G ++ Sbjct: 120 FGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSNINNTIRDLKERGLWIVGTDVNA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +K E+ + +A ++G EGKG+ + + + M G I +LN S AA++ +Y Sbjct: 180 EKSFEELNYDFPVAFVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 239 Query: 277 QNHFA 281 + Sbjct: 240 VSKRK 244 >gi|13470525|ref|NP_102094.1| tRNA/rRNA metyltransferase [Mesorhizobium loti MAFF303099] gi|14021267|dbj|BAB47880.1| tRNA/rRNA metyltransferase [Mesorhizobium loti MAFF303099] Length = 235 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 131/227 (57%), Positives = 165/227 (72%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 LYG+HTV AAL+NP RKI ++L T+NA RL+ + F + V P+ IDKI G +AV Sbjct: 3 LYGLHTVRAALDNPRRKIRKMLVTRNAAERLEIEDLAALTFKAELVEPRDIDKITGSDAV 62 Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG+ +E PL LDA+ +++L++VLD + DPHN+GAILRSAVAF +ITT R+SP Sbjct: 63 HQGVLIEAEPLKPKRLDALGDTRLVLVLDQITDPHNVGAILRSAVAFGAGALITTARHSP 122 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 ES VLAKSASGALEHI I + NL DAL ++H GFQTIGL SD LE D+IA Sbjct: 123 QESGVLAKSASGALEHIDQIEVKNLADALGQLHEAGFQTIGLDSDGPAELETSFAGDRIA 182 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L+LGAEGKGLR KT+ET T++A L MPG I++LNVSNAAAV+LY + Sbjct: 183 LVLGAEGKGLRQKTRETVTTLARLDMPGAIRSLNVSNAAAVSLYAAR 229 >gi|317057706|ref|YP_004106173.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7] gi|315449975|gb|ADU23539.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7] Length = 271 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 93/265 (35%), Gaps = 9/265 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-----NNPSRKIFQLL----AT 74 +++ K++ R+ + + G+ AL N +I + Sbjct: 5 SKDNPKIKQLSKLYSNRRYRRETGLFVIEGIRGCVDALVDDTLNGGMMEIEGIYYLEEIF 64 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134 ++ + DKI ++ + T D ++ Sbjct: 65 EDICDEYKPMLMSLDERKRFIITKDIADKISDTDSCQGIFVVAKMLDKPFTEDKLKKGGK 124 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VLD + DP N+G ++R++ A DGI+ T + +SA G++ + + Sbjct: 125 YLVLDELQDPGNLGTMIRTSDAVGLDGIVLTGNCVDLYNPKTVRSAVGSMPRVDIFVEKD 184 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 ++ T + + Q + A+++G EG+GL E + + Sbjct: 185 FERVIEAFRLKDIPTAAAVINGGTEIRQYDFSKGCAVVIGNEGRGLMHDHAEMCSHKVTI 244 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 M G I +LN + AA + L+ Sbjct: 245 AMHGHIDSLNAATAATIFLWEMTRQ 269 >gi|255010434|ref|ZP_05282560.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis 3_1_12] gi|313148238|ref|ZP_07810431.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12] gi|313137005|gb|EFR54365.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12] Length = 246 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 101/245 (41%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I HQG+ + + L S ++LD + D N GAI R+ Sbjct: 63 IT--RKNHQGVVAFISSVTYQKTEDLVPFLFEEGKSPFFVMLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I + S + +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 121 AGVDAVIIPAKGSVTVNADAMKTSAGALHTLPVCREQNLKTTLQYLKDSGFRIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE G+ + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPMCIIMGAEDTGVSYDNLALCDEWVKIPMLGSIESLNVSVAAGILIYEG 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRT 245 >gi|221194755|ref|ZP_03567812.1| RNA methyltransferase, TrmH family, group 3 [Atopobium rimae ATCC 49626] gi|221185659|gb|EEE18049.1| RNA methyltransferase, TrmH family, group 3 [Atopobium rimae ATCC 49626] Length = 323 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 73/289 (25%), Positives = 120/289 (41%), Gaps = 22/289 (7%) Query: 11 KIFSLKDSHYAKLRRNHR-------DYK---KMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 K DS A ++HR D + + + + + G V+ A Sbjct: 30 KRKKRADSREACGTKDHRSGGYRPRDIRTSDDTRGARKSRTSRQKSAFDLIEGRRAVAEA 89 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPH-----PFPVKTVPPQTIDKIVGKEAVHQGLA 115 L + L ++ R L PV+ VP Q +D + A HQG+ Sbjct: 90 LALNI-PLKNALVQVSSGERDQEIETLAKQLSSDGVPVERVPRQVLDALSSHGA-HQGVI 147 Query: 116 LETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 + T P L + L++VLDHV D N GAI+RSA G++ + Sbjct: 148 VRTRPFEYAELSDILEKAGSKDALVVVLDHVTDEGNFGAIVRSAEVVGAAGVVIANARAA 207 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 K+++GA+ H+P R+SN++ AL+++ + GF T G + + + ++A Sbjct: 208 QVGVGAYKTSAGAVLHVPIARVSNVSRALEELKAAGFWTCGATEHAADDVWSAPLGGRLA 267 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L++G+EG G+ ET L G I++LNV+ A V Y Sbjct: 268 LVMGSEGAGISRLVLETCDFACKLPQRGKIESLNVAQATTVMCYEWLRR 316 >gi|78189687|ref|YP_380025.1| RNA methyltransferase TrmH, group 3 [Chlorobium chlorochromatii CaD3] gi|78171886|gb|ABB28982.1| RNA methyltransferase TrmH, group 3 [Chlorobium chlorochromatii CaD3] Length = 248 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 107/239 (44%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG + V L + I ++ N +L + ++K+ Sbjct: 9 IVYGRNAVLELLQHKPESIEKIYFQFNTSHPKLKEIVITARRLKL-VSGKARLEKLSEIA 67 Query: 109 AV--HQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ + + +L+ ++ LL+VL ++DPHN+GAI+R+A A + D Sbjct: 68 GTTKHQGVCALISSVTYYSLEEVLAQPRNSAPLLVVLQGLDDPHNLGAIIRTAEAVAADA 127 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ + +A + K+A+GAL H+ ++ +L L+ +H Q D+++ Sbjct: 128 VVVVEGKGSPINAAVHKAAAGALSHLRVCKVKSLVRTLEFLHQQKVQVFAADMDAERNYT 187 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 AL+LG EG GL P+ + ++ L M G +++LNVS A V LY Sbjct: 188 DVDMRQPTALVLGMEGSGLAPEAMQFCDTVVRLPMAGCVESLNVSVTAGVLLYEAMRQR 246 >gi|27380610|ref|NP_772139.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110] gi|27353775|dbj|BAC50764.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110] Length = 308 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 113/248 (45%), Positives = 161/248 (64%), Gaps = 1/248 (0%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 +R K + R ++ + LYG H+V+ AL NP+R+I +L T+NA RL + N Sbjct: 51 NRPGKSAGRPAWRDRDSASDGPVILYGWHSVTMALQNPARRIRKLTLTENAARRLAEE-N 109 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 + + V PQ ID+++ +AVHQGL E PL SP ++ + +++VLD + DPHN Sbjct: 110 IETRVTPEIVRPQEIDRLLSPDAVHQGLLAEADPLPSPDIETLTPEGMVLVLDQITDPHN 169 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAILRSA AF+ I+TT R+SP + VLAK+ASGALE +P + + NL AL ++ G Sbjct: 170 VGAILRSAAAFAVKAIVTTARHSPEATGVLAKAASGALELVPVVTVQNLARALTALNERG 229 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 FQT+GL S+ + L + +AL+LGAEGKGLR T+ET + +A L MPG IK+LNVS Sbjct: 230 FQTVGLDSEGSEDLSNVALREPLALVLGAEGKGLRQLTRETCSVVARLDMPGEIKSLNVS 289 Query: 267 NAAAVALY 274 NAAA++LY Sbjct: 290 NAAALSLY 297 >gi|325288439|ref|YP_004264620.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM 8271] gi|324963840|gb|ADY54619.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM 8271] Length = 273 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 104/284 (36%), Gaps = 26/284 (9%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 +I+ ++E++ + H +++ + F G V AL Sbjct: 1 MITSVRNEQVKHIVSLH-------------------QTKGRKTSQQFFAEGRRFVGEALM 41 Query: 63 NPSRKIFQLLATKN---ALARLDWDANLPHP---FPVKTVPPQTIDKIVGKEAVHQGLAL 116 R + L P + V + +I E LAL Sbjct: 42 RSKRIEKIFYCPAKGSTWEREKLEELILEAGKLRIPAEEVSEDVMKRISATEEPQGILAL 101 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 S + +L++LD + DP N+G ILR+++A ++ T+ + + Sbjct: 102 INQEEYSWDDIQIEPDTILLILDGIRDPGNLGTILRASLAAGVKNVVLTRGTVDYYNPKV 161 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGA 235 +S+ GA+ + ++ D + + + + Q++ +AL++G+ Sbjct: 162 LRSSMGAVFSMCILQEIERPDIWAFCRQNHLNLVVSALEGQSVYRQKMDQSLPLALVIGS 221 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E G+ P+ E + + M +++LN + AA + L+ + Sbjct: 222 EANGVAPEFSEISPKKIMIPMQNNVESLNAALAAGILLFEIRRQ 265 >gi|15642593|ref|NP_232226.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153824008|ref|ZP_01976675.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33] gi|227082715|ref|YP_002811266.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2] gi|229507350|ref|ZP_04396855.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae BX 330286] gi|229509727|ref|ZP_04399208.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae B33] gi|229516851|ref|ZP_04406297.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae RC9] gi|229606856|ref|YP_002877504.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae MJ-1236] gi|254292176|ref|ZP_04962946.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226] gi|254851138|ref|ZP_05240488.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio cholerae MO10] gi|255744433|ref|ZP_05418385.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholera CIRS 101] gi|262158453|ref|ZP_06029568.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae INDRE 91/1] gi|298500578|ref|ZP_07010382.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae MAK 757] gi|52783330|sp|Q9KNY2|RLMB_VIBCH RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|9657186|gb|AAF95739.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126518472|gb|EAZ75695.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33] gi|150421905|gb|EDN13882.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226] gi|227010603|gb|ACP06815.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2] gi|229345914|gb|EEO10886.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae RC9] gi|229353201|gb|EEO18140.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae B33] gi|229354855|gb|EEO19776.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae BX 330286] gi|229369511|gb|ACQ59934.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae MJ-1236] gi|254846843|gb|EET25257.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio cholerae MO10] gi|255737958|gb|EET93351.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholera CIRS 101] gi|262029614|gb|EEY48263.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae INDRE 91/1] gi|297540747|gb|EFH76804.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae MAK 757] Length = 247 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTVPPQTIDKI 104 N +YG+H V+A L + + K RL N ++ + + +D Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL P + A LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A V L+ Sbjct: 182 DIYQSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|254974313|ref|ZP_05270785.1| putative RNA methylase [Clostridium difficile QCD-66c26] gi|255091709|ref|ZP_05321187.1| putative RNA methylase [Clostridium difficile CIP 107932] gi|255313437|ref|ZP_05355020.1| putative RNA methylase [Clostridium difficile QCD-76w55] gi|255516125|ref|ZP_05383801.1| putative RNA methylase [Clostridium difficile QCD-97b34] gi|255649221|ref|ZP_05396123.1| putative RNA methylase [Clostridium difficile QCD-37x79] gi|260682395|ref|YP_003213680.1| putative RNA methylase [Clostridium difficile CD196] gi|260685994|ref|YP_003217127.1| putative RNA methylase [Clostridium difficile R20291] gi|260208558|emb|CBA61230.1| putative RNA methylase [Clostridium difficile CD196] gi|260212010|emb|CBE02553.1| putative RNA methylase [Clostridium difficile R20291] Length = 265 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 107/262 (40%), Gaps = 7/262 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALA 79 +++ K ++ KS++ ++ + G V AL I + K Sbjct: 7 SKDNEKLKYTRALL-KSKNRNKESKFIIEGYRIVMLALECMANLDYVFINEEFENKKEHV 65 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 +L D + + + ++V E + + + + + + +++LD Sbjct: 66 KLLEDLDK-KNTKIYKTTNKNFKELVDTENTQGIIGVVSFKKKKLSESINKKDKFVLILD 124 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N+G I+R+A + D II K + + +S G++ I ++ + + Sbjct: 125 RIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIF-DMNIIDASQDETV 183 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + S F + +++ ++ K+AL++G E G+ + + + + + G Sbjct: 184 DMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGNEANGINEELVSKSDILVKIPIYGK 243 Query: 260 IKALNVSNAAAVALYITQNHFA 281 ++LN + ++A+ +Y + + Sbjct: 244 AESLNAAISSAILMYEIKKYLI 265 >gi|77163754|ref|YP_342279.1| RNA methyltransferase TrmH, group 3 [Nitrosococcus oceani ATCC 19707] gi|76882068|gb|ABA56749.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosococcus oceani ATCC 19707] Length = 274 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 73/268 (27%), Positives = 116/268 (43%), Gaps = 17/268 (6%) Query: 29 DYKKMQSFNQKSRHTSQPE-----NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++ + + YG+H V AAL P+ ++ L + + R Sbjct: 3 RKRRFERLHPSPGLEKAEGDGLSSCELRYGLHAVRAALEQPALQVMALWLDQARIDRSLQ 62 Query: 84 DANLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQ 133 + V + +D +V A HQG+ + + L+ + Sbjct: 63 KLAKLAFQRGLKAQLVKREELDDLV-PGARHQGVVARCSVQPALTEEGLLTFLENLEAPP 121 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL++LD V DPHN+GA LR+A A G++T K + +AV K ASGA E IP +R++ Sbjct: 122 LLLLLDGVQDPHNLGACLRTAEAAGVHGVVTPKDRAAGLTAVARKVASGAAERIPLVRVT 181 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NL ++ + G +G + + L+LGAE +GLR TQE + Sbjct: 182 NLARVMRALRERGLWLVGTVVGGSHNSLYETDLQGPLGLVLGAEDRGLRRLTQEHCDCLV 241 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G + +LNVS AA V L+ Q Sbjct: 242 QIPMQGAVGSLNVSVAAGVCLFEAQRQR 269 >gi|221198307|ref|ZP_03571353.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2M] gi|221208246|ref|ZP_03581250.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2] gi|221171894|gb|EEE04337.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2] gi|221182239|gb|EEE14640.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2M] Length = 260 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 101/261 (38%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + H + L G H SA L+ + + AT+ AL Sbjct: 2 KAITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGAIPELCV-ATEGALG 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G L P V ++ +++ Sbjct: 61 HAEAQAIVARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPSPPLPARVAHTSVVL-- 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + ++ GA + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRAGMGAHFLLSIHEDVAPEAL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ S + + + +A + G EG G+ ++ A + PG Sbjct: 179 AARLDVPV---ALTDSHGAQAIYDCDLSQPVAWVFGNEGAGVSAFWRDIAAHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQVRQ 256 >gi|325271218|ref|ZP_08137763.1| RNA methyltransferase [Pseudomonas sp. TJI-51] gi|324103621|gb|EGC00923.1| RNA methyltransferase [Pseudomonas sp. TJI-51] Length = 248 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 117/240 (48%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ Q+ ++ + + V + +D V Sbjct: 7 IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLQALLALAAENRVAVGQAERREMDAWV-- 64 Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +P L+ L++VLD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGELMLEEMLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + + V+ K A GA E IP + ++NL L+K+ G +G + ++++ + Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ + +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMSGSVSSLNVSVATGVCLFEAVRQR 244 >gi|118589655|ref|ZP_01547060.1| rRNA methylase [Stappia aggregata IAM 12614] gi|118437741|gb|EAV44377.1| rRNA methylase [Stappia aggregata IAM 12614] Length = 275 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 96/270 (35%), Gaps = 4/270 (1%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I + + ++ K+++ + +H SQ G+ + AL + Sbjct: 2 IEKRQGAVKQITSHSNPIVKEIKGLVAQRKHRSQSGLFVAEGLKLATDALEAGWGIRYLA 61 Query: 72 LATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 L N +A+ A + V + + K+ + + LL P Sbjct: 62 LGPDARDNPVAQKAAAAAKARGALILEVSTAVMSAMTRKDNPQMVVGVYEQQLLGPRDIE 121 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + L + LD V DP N+G I+R+ A G++ + + ++ G+L H+P Sbjct: 122 PSGTTLWVALDRVRDPGNLGTIIRTVDAVGGAGVMLVGDCTDPFAVEAVRATMGSLFHVP 181 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ + +W + + L++G E KGL Sbjct: 182 LAKLGKD-EFKSLAATWPGTVAATHLKGSVDYRTPDYAEPVLLVMGNEQKGLEDDMAAAC 240 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ + G +LN++ A VALY + Sbjct: 241 PTLIRIPQVGQADSLNLAVATGVALYEIRR 270 >gi|94495543|ref|ZP_01302123.1| rRNA methylase [Sphingomonas sp. SKA58] gi|94424931|gb|EAT09952.1| rRNA methylase [Sphingomonas sp. SKA58] Length = 266 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 49/260 (18%), Positives = 93/260 (35%), Gaps = 7/260 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K+++S +K ++ G+ ++ A ++L L + Sbjct: 9 SNPLVKRVRSLREK-KYRKAEGLFLAEGLRILTEAREEGVLP--EMLFHAGTAHPLGLEL 65 Query: 86 N---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 V P + KI GK+ + + L ++ + +V + Sbjct: 66 IDDIEAAGGDVIVTTPDILSKISGKDNAQALVGVYRDRLTPLAALDRSSADIWIVAQSLR 125 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ILR+ A G+I S +++ GAL + + L + Sbjct: 126 DPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRASMGALFTQSITQARWE-EFLPWL 184 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 Q IG S + + ++ L++G E +GL + + + M G + Sbjct: 185 RGGAGQLIGTSLKATQDYQEPAYQSPSFLLVGNEAQGLPADYEAQCDLLVKMPMRGKADS 244 Query: 263 LNVSNAAAVALYITQNHFAK 282 LN + A AV Y N K Sbjct: 245 LNAAVATAVMAYELLNQRRK 264 >gi|221066327|ref|ZP_03542432.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni KF-1] gi|220711350|gb|EED66718.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni KF-1] Length = 256 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 112/242 (46%), Gaps = 11/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V L + I ++ ++A R + + I K+VG Sbjct: 6 VLFGFHAVGVRLKTAPQSIIEVYFEASRRDARMRQFLERAKEAGVRLIEADALRIAKLVG 65 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS--------QLLMVLDHVNDPHNIGAILRSAVAFS 158 A + TLD + + LL+VLD V DPHN+GA LR A Sbjct: 66 SHGHQGVAARVEEVKDTRTLDELLDDLEDEGVKAPLLLVLDGVTDPHNLGACLRVADGAG 125 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K ++ +A +AK ASGA E +PY ++NL L+++ G IG S D+ + Sbjct: 126 VHAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTLKELKERGIWIIGTSGDADR 185 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q AL+LGAEG G+R T++T ++ + M G +++LNVS A+ V LY Sbjct: 186 HLYQMDLTGPTALVLGAEGDGMRQLTRKTCDALVSIPMQGAVESLNVSVASGVCLYEALR 245 Query: 279 HF 280 Sbjct: 246 QR 247 >gi|116250180|ref|YP_766018.1| rRNA methyltransferase [Rhizobium leguminosarum bv. viciae 3841] gi|115254828|emb|CAK05902.1| putative rRNA methyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 271 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 93/258 (36%), Gaps = 6/258 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K +++ K + + G+ V A+ I L+ K A + + Sbjct: 9 NPIIKDIKALTNK-KSREESGTFLAEGLKLVIDAIELGW-AIRTLVYAKAAKGKPLVEQM 66 Query: 87 LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 V V + I I ++ + + + + + LD V Sbjct: 67 AAKTVASGGLVLEVSEKVIASITRRDNPQMVVGIFEQRWRPLKGIRLSEGETWVALDRVR 126 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+A A GII + S ++ G++ +P R + + Sbjct: 127 DPGNLGTIIRTADAAGASGIILLGETTDPFSLETVRATMGSVFAVPLARATPEEFIAWRK 186 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + + + + + + L++G E GL + A ++A + G + Sbjct: 187 SAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQLAREADALARIPQQGRADS 246 Query: 263 LNVSNAAAVALYITQNHF 280 LN++ A AV L+ + H Sbjct: 247 LNLAVATAVMLFEARRHL 264 >gi|325335303|gb|ADZ11577.1| rRNA methylase [Riemerella anatipestifer RA-GD] Length = 258 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 101/257 (39%), Gaps = 11/257 (4%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHP 90 M+ + + + F++G+ V A+ K+F + ++ H Sbjct: 1 MKQDYTSHKKNNDKKEDFIFGLRPVIEAIEAGKTIDKVFLQNGLQGSIYAELKALLAKHK 60 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVND 143 VP + +++ HQG+ + + +++ + L++LD + D Sbjct: 61 IRPNYVPIEKLNRFT--RKNHQGVVAFISDIPFHSIEAVLPEIFEQGKTPFLVILDRLTD 118 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N GAI R+A D II ++ + ++ K+++GAL ++ + NL + + Sbjct: 119 VRNFGAICRTAECVGVDAIIIPEKGAAPINSDAIKTSAGALYNVKICKEKNLAHTVDFLQ 178 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + ++K + AL++G E KG+ + + L + G ++L Sbjct: 179 QSGVSVFSATEKAEKLIYDIDFKIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQSL 238 Query: 264 NVSNAAAVALYITQNHF 280 NVS A LY Sbjct: 239 NVSVACGAILYEVVRQR 255 >gi|71083818|ref|YP_266538.1| SpoU rRNA methylase family [Candidatus Pelagibacter ubique HTCC1062] gi|91763146|ref|ZP_01265110.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique HTCC1002] gi|71062931|gb|AAZ21934.1| SpoU rRNA Methylase family [Candidatus Pelagibacter ubique HTCC1062] gi|91717559|gb|EAS84210.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique HTCC1002] Length = 247 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 7/239 (2%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTI 101 + + G H V AL NP RK+ ++ T+ + R + N+ V + + Sbjct: 2 NKSSFLIVGQHAVIEALRNPKRKVLKVFLTEESKKNIHRKNPKKNVLEDVKVYFKSKKEL 61 Query: 102 DKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 DK K+ + G + +N + +D V DP NIG+++RSA +F Sbjct: 62 DKYTSKDQIMHGGYIAEVEHIDQPDLKEFIKGKNELTFVCIDEVTDPRNIGSLIRSASSF 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I +R PS+S ++ K+ASG +EHI +SN+ L+ + F G + + Sbjct: 122 HIDGLIVKERQFPSDSKLMYKAASGCMEHINIFEVSNINSTLKNLREKNFWVYGFDARGE 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K + K L+ G+EG G+R T + + + +++LN+SN+AA+ + Sbjct: 182 KDFTEIKWEGKNVLLFGSEGFGMREHTGKYTDFFVKIDINKDVESLNISNSAAIVFHHL 240 >gi|333030107|ref|ZP_08458168.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides coprosuis DSM 18011] gi|332740704|gb|EGJ71186.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides coprosuis DSM 18011] Length = 249 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + +++ Sbjct: 4 KSEIIFGVRAVIEAVEAGKE-IDKILVKKDIQSDLSKELFTALRGKMVPVQRVPVERLNR 62 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ + + L + ++LD V D N GAI R+ Sbjct: 63 VT--RKNHQGVIAYVSAVTYQKVEDLVPFLYEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D ++ + S S +A K+++GAL +P R +L ++ + GF+ + + Sbjct: 121 GGVDAVVIPMKGSVSVNADAVKTSAGALHTLPVCREQSLNTTIKYLKDSGFRILAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 Q I LI+G+E KG+ + + + G I++LNVS AA V +Y Sbjct: 181 DYNYTQGDYTGPICLIMGSEDKGISAENLSLCDEWMTIPILGNIQSLNVSVAAGVLIYEA 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRT 245 >gi|226306779|ref|YP_002766739.1| RNA methyltransferase [Rhodococcus erythropolis PR4] gi|226185896|dbj|BAH34000.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4] Length = 276 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 108/249 (43%), Gaps = 9/249 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSA----ALNNP-SRKIFQLLATKNALARLD--WDANLPHPF 91 ++ + + G ++V+ AL+N +R + L T++A R D L Sbjct: 19 RTAERRKAGRFLVEGENSVTELLNGALSNGEARPVHDLFYTEDAAERYQHVIDRALTAGV 78 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 V V + I + +A+ + + + ++LL V VN+P N G ++ Sbjct: 79 RVALVTDRAIKALSDTVTPPGLVAVSDLLDVPLSAAVHQETRLLAVPVEVNEPGNAGTVI 138 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R A A D I + + +S++G+L H+P +R + ++++ + G Q + Sbjct: 139 RIADAVGADAAILAGDSVDPHNGKVVRSSAGSLFHLPVVRDRDTVSVIEQIRAAGIQILA 198 Query: 212 LSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 ++D + L++ + A + G E GL P A + + G ++LN++ AA Sbjct: 199 TAADGEVDLDEADELLSKPTAWLFGNEAHGLDPAIAAQADHRVRIPIHGRAESLNLATAA 258 Query: 270 AVALYITQN 278 A+ LY + Sbjct: 259 AICLYASAR 267 >gi|313904853|ref|ZP_07838225.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium cellulosolvens 6] gi|313470286|gb|EFR65616.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium cellulosolvens 6] Length = 305 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 13/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 L G + V A + R + +L K + + + VP + ++++ + Sbjct: 68 LEGRNAVLEAFRSG-RSVDKLYLQADLKEGMIQTIAREARKAGTVINYVPKERLNQMS-E 125 Query: 108 EAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ A ++ + L +LD + DPHN+GAI+R+A Sbjct: 126 TGSHQGVIAVVASFDYAEVEDIFQKAKDKGEAPFLFLLDGIEDPHNLGAIIRTANLAGAH 185 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I T+ + +A +AK+++GA+ + P +++NL + ++ G + + + Sbjct: 186 GVIITRHRAVGLTATVAKASAGAINYTPVAKVTNLGATIDELKKKGMWFVCA-AMDGTRM 244 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G EG+G+ +E A + M G I +LN S AA V Y Sbjct: 245 YDLDLKGPIGLVIGNEGEGVSRLVREKCDFTASIPMKGDIDSLNASVAAGVLAYEIVRQR 304 >gi|313206869|ref|YP_004046046.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM 15868] gi|312446185|gb|ADQ82540.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM 15868] gi|315023943|gb|EFT36945.1| putative rRNA methylase [Riemerella anatipestifer RA-YM] gi|325335693|gb|ADZ11967.1| rRNA methylase [Riemerella anatipestifer RA-GD] Length = 257 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 54/281 (19%), Positives = 98/281 (34%), Gaps = 26/281 (9%) Query: 1 MN-LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59 M +I +++KI K + +R + + GV Sbjct: 1 MKTIIESLQNDKI------------------KHLNRLATDNRFRKKQGVFIVEGVQENQR 42 Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 AL + + + + A LP + + + KI + + + Sbjct: 43 ALTFGNEALEFYI------CESIFSAELPTNAKIYYITDKIYQKIAYRGTTEGIIGVYKT 96 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 P + +++++ + P N+GAILRS AF D +I T + + +S Sbjct: 97 PQNHLDHFIPSENASVIIVESIEKPGNLGAILRSCEAFGIDALIVTDPKVDFYNPNVIRS 156 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 + G L + + N + S+ + + Q+ K ALI G E G Sbjct: 157 SVGCLFGMNIFQADNQSTLAFLKKHHFKVYTTFMSEDAQLIHQKDFKTKTALIFGTEHSG 216 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + A + M G I +LN+SNA AV+ Y Sbjct: 217 ISDFWKGKA-ENILVPMAGTIDSLNLSNAVAVSCYEILRQR 256 >gi|320108702|ref|YP_004184292.1| TrmH family RNA methyltransferase [Terriglobus saanensis SP1PR4] gi|319927223|gb|ADV84298.1| RNA methyltransferase, TrmH family, group 3 [Terriglobus saanensis SP1PR4] Length = 263 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 106/243 (43%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 LYG+H V A+ + R + + K+A ++ + + P ID++ Sbjct: 1 MELLYGLHPVQEAVRSRPRDLDHITISRERKDARLDALVESARSAGIRITSEPRAQIDRM 60 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 E +A D + + LD V DPHN+GA+LR+A Sbjct: 61 AKTEMHQGVIAFLRERRALAVEDLLAVQKPDGQRRFFLALDGVEDPHNLGALLRTADGAG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 DGI+ +R S +AV+AK+++GA EH+ +++NL AL++M IGL Sbjct: 121 VDGILLPERRSAPITAVVAKTSAGATEHVRIAKVTNLVRALERMKKDNIWVIGLDERGTP 180 Query: 219 PLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L+LG+EG GL ++T + + M G + +LNVS A AV +Y Sbjct: 181 DYTDFDFAPTDCVLVLGSEGAGLHDLVKKTCDYLLRIPMAGGVSSLNVSVAGAVVMYEVA 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|310644224|ref|YP_003948983.1| RNA methyltransferase, trmh family, group 3 [Paenibacillus polymyxa SC2] gi|309249175|gb|ADO58742.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus polymyxa SC2] Length = 248 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 67/245 (27%), Positives = 115/245 (46%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDK 103 E ++ G H+V+ AL + R I ++ NA L V V + +D+ Sbjct: 2 EEEWIAGKHSVTEALRSG-RTINKIWIADNAQKHLTLPITAEAKKAGIIVLQVDKRKLDQ 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 +V HQG+ + AP ++ L++LD + DPHN+G+ILR+A Sbjct: 61 MVPGI-QHQGVVAQAAPFAYAEVEDLLASARAKGEEPFLILLDEIEDPHNLGSILRTADC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII KR S + + ++K+++GA+E++P R+SNL + ++ G +G + Sbjct: 120 TGAHGIIVPKRRSAAVTVTVSKTSAGAVEYVPVARVSNLGQTIDRLKEEGVWVVGTDVTA 179 Query: 217 KKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 P+ + +A+++G E KG+ +E + L M G I +LN S AA V +Y Sbjct: 180 TDPVFGNGVFTGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGQINSLNASVAAGVVMYE 239 Query: 276 TQNHF 280 Sbjct: 240 VLRGR 244 >gi|229492736|ref|ZP_04386537.1| tRNA/rRNA methyltransferase [Rhodococcus erythropolis SK121] gi|229320395|gb|EEN86215.1| tRNA/rRNA methyltransferase [Rhodococcus erythropolis SK121] Length = 276 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 108/249 (43%), Gaps = 9/249 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSA----ALNNP-SRKIFQLLATKNALARLD--WDANLPHPF 91 ++ + + G ++V+ AL+N +R + L T++A R D L Sbjct: 19 RTAERRKAGRFLVEGENSVTELLNGALSNGEARPVHDLFYTEDAAERYQHVIDRALTAGV 78 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 V V + I + +A+ + + + ++LL V VN+P N G ++ Sbjct: 79 SVALVTDRAIKALSDTVTPPGLVAVSDLLDVPLSAAVHQETRLLAVPVEVNEPGNAGTVI 138 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R A A D I + + +S++G+L H+P +R + ++++ + G Q + Sbjct: 139 RIADAVGADAAILAGDSVDPHNGKVVRSSAGSLFHLPVVRDRDTVSVIEQIRAAGIQILA 198 Query: 212 LSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 ++D + L++ + A + G E GL P A + + G ++LN++ AA Sbjct: 199 TAADGEVDLDEADELLSKPTAWLFGNEAHGLDPAIAAQADHRVRIPIHGRAESLNLATAA 258 Query: 270 AVALYITQN 278 A+ LY + Sbjct: 259 AICLYASAR 267 >gi|210623621|ref|ZP_03293947.1| hypothetical protein CLOHIR_01897 [Clostridium hiranonis DSM 13275] gi|210153491|gb|EEA84497.1| hypothetical protein CLOHIR_01897 [Clostridium hiranonis DSM 13275] Length = 264 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 53/284 (18%), Positives = 112/284 (39%), Gaps = 25/284 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ K +EKI S K KS++ ++ + G ++ A Sbjct: 1 MVEITSKDNEKIKSTK-------------------LLLKSKNRNKESKFIIEGYRILTLA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGKEAVHQGLAL 116 I + ++ + + L V + +V E LA+ Sbjct: 42 FEQ-KDIIDYVFINEDFENKEEHRKFLKELEDANIKVYKTTNKNFKDMVDTENTQGILAV 100 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 + + + + + ++VLD + DP N+G I+R+A A D IIT K + + Sbjct: 101 VSYEKKTLEKNLTDDDKYIIVLDRIQDPGNMGTIIRTADAAGADAIITLKGCVDIYNPKV 160 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 +S G++ I + + L + S G + + +++ + +K+AL++G E Sbjct: 161 IRSTMGSIF-SMNIIPAERDEMLSTLKSKGIKIVSSWLNTENWYDTVDYGNKVALVIGNE 219 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G+ E + + + + G ++LN + ++A+ +Y + Sbjct: 220 ANGIDDVIAENSDLLVKIPIYGSAESLNAAISSAILMYEIKKSL 263 >gi|256820057|ref|YP_003141336.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] gi|256581640|gb|ACU92775.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] Length = 267 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 6/259 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + KK+ ++KSR + + G + AL + LL A Sbjct: 7 QNPLIKKIVLLSEKSRERKKEGICVVEGAREIRLALE-GGYTLETLLYQPEIFAEEHLLK 65 Query: 86 NL---PHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHV 141 L + + KI + + +A ++T TL V +S LL+V + Sbjct: 66 LLSHTAQRVNPIAISKEVYQKISYRSSTEGVIALIQTKKHSLDTLAFVTDSPLLLVAEAP 125 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 P NIGA+LR+A A + D +I +S I + T+ + Sbjct: 126 EKPGNIGALLRTADAANIDAVII-ANPKTDLYNPNIIRSSVGCVFTVPIATGSTTEVIDF 184 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + G + + + KP + + A+++G E +GL + +T + M G+I Sbjct: 185 LKAKGINSYCAALTAFKPYYEVSFEEASAIVVGTEDQGLTEEWLTHSTQNIIIPMEGVID 244 Query: 262 ALNVSNAAAVALYITQNHF 280 ++NVS AAAV ++ + Sbjct: 245 SMNVSVAAAVLIFEAKRQR 263 >gi|289209098|ref|YP_003461164.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp. K90mix] gi|288944729|gb|ADC72428.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp. K90mix] Length = 251 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 7/235 (2%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGKEA 109 G+H V+A L + ++ L L V+ +D+ Sbjct: 15 GIHAVAAVLQHAPERVRLLQLASGTLEPALAQLLEQAQARGISVERAGRDKLDQHHPGFQ 74 Query: 110 VHQGLALE----TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 + + L++VLD V DPHN+GA LR+A A I+T Sbjct: 75 HQGVIVHCAPRPVVEEKALVQRVRNGLDLVLVLDGVTDPHNLGACLRTADAAGAGAIVTP 134 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + +S + + K ASGA E +P + + NL L + G T+GL + + L Sbjct: 135 RHHSAALTPAAIKVASGAAETVPVVAVGNLARTLAALKDAGMWTVGLDGAAHEDLYAVDL 194 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A+++GAEG+G+R T+E +A + M G +++LNVS A + L+ + Sbjct: 195 RPPTAIVMGAEGEGMRRLTREACDHLARIPMGGTVESLNVSVATGITLFEARRQR 249 >gi|213962918|ref|ZP_03391178.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno] gi|213954575|gb|EEB65897.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno] Length = 269 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 51/259 (19%), Positives = 98/259 (37%), Gaps = 6/259 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + KK+ ++KSR + + G + AL + LL + + + Sbjct: 7 QNPLIKKIALLSEKSRERKKQGLCVVEGAREIRLALQ-GGYSLENLLYQPDIFSERQLNE 65 Query: 86 NLP---HPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHV 141 L + + +KI + + +A +E TL LL+V + Sbjct: 66 LLSYTTQKLTPIAISKEVYEKISYRSSTEGVIALVEVKKHGLDTLAFSTKKPLLLVAEAP 125 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 P NIGA+LR+A A D +I +S I + + Sbjct: 126 EKPGNIGALLRTADAAHIDAVII-ANPKTDLYNPNIIRSSVGCVFTVPIATGTTAEVIDF 184 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + + + + KP + ++ A+++G E +GL + +T + M G+I Sbjct: 185 LKAKNISSYCAALTASKPYYEVSFSEASAIVVGTEDQGLTDEWLTHSTQNIIIPMEGVID 244 Query: 262 ALNVSNAAAVALYITQNHF 280 ++NVS AAAV ++ + Sbjct: 245 SMNVSVAAAVLIFEAKRQR 263 >gi|333026132|ref|ZP_08454196.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. Tu6071] gi|332745984|gb|EGJ76425.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. Tu6071] Length = 307 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 67/281 (23%), Positives = 119/281 (42%), Gaps = 15/281 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK---IFQ 70 + H K R + K+ Q ++ + + + G + V AL + Q Sbjct: 29 EARKGHV-KNRLANAKAKQTQR-RTAAKSRGKSSSELVVGRNPVFEALRDGVPATALYVQ 86 Query: 71 LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 + R + P +D++ HQGL L+ P + + Sbjct: 87 QFIDNDERVRDALKLAADRGGIHLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDL 145 Query: 130 R-------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + L++ LD V DP N+GAI+RS AF G++ +R + +A KS++G Sbjct: 146 PAAAYDEGDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAG 205 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241 P R++NLT AL+ G +GL++D + + + + + +++G+EGKGL Sbjct: 206 TAARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTVGELAALDGPVVIVIGSEGKGLS 265 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ET + MPG ++LN AA + +Y + A+ Sbjct: 266 RLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRAR 306 >gi|294671329|ref|ZP_06736180.1| hypothetical protein NEIELOOT_03038 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291306961|gb|EFE48204.1| hypothetical protein NEIELOOT_03038 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 262 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 56/280 (20%), Positives = 92/280 (32%), Gaps = 23/280 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ +I K + + L G H + A Sbjct: 1 MEHIASAQNSRI------------------KHLAKLAASAAKRRAFGQTLLEGTHLLEAF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 LN R + +N L + L P I+G+ A Sbjct: 43 LNAGGRP-ECVYVAENRL-EDAEISALLQRMP-SEKTVSVAAPILGRLTGLGEGGNIVAL 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + P+ + + +VL+ V DP NIG ILRSA A I+ + S + ++A Sbjct: 100 IKLPSAEKLPEDGDCVVLERVQDPGNIGTILRSAAASGVRDIVLGADCADVWSPKVLRAA 159 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GA + ++L Q + L D + G EG G+ Sbjct: 160 MGAHFLLTLYPDTDLAVWRQGYRPPLL--ATALDERACGLYGLDLRDPCGWLFGNEGAGI 217 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + A + M G ++LNV+ AA V L+ Sbjct: 218 SAEMRRVADRTVKIPMAGDTESLNVAMAATVCLFEQMRQR 257 >gi|269958581|ref|YP_003328368.1| RNA methyltransferase [Anaplasma centrale str. Israel] gi|269848410|gb|ACZ49054.1| RNA methyltransferase [Anaplasma centrale str. Israel] Length = 262 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 80/255 (31%), Positives = 130/255 (50%), Gaps = 13/255 (5%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP 98 R + E +++ G H +AL NP+R +LL T L + A + + V Sbjct: 3 RTRNHEECMWICGRHVCISALQNPNRVCRELLVTGEFLKKHPEVARMAQNKGIRPRRVAA 62 Query: 99 QTIDKIVGKEAV-HQGLALETAPLLSPTLDAVRNSQLL----------MVLDHVNDPHNI 147 + I KI G HQG+AL L D +R ++ ++LD V D +N+ Sbjct: 63 EEIGKIWGHGRTVHQGIALRVGKLFGRDGDKLRVEDIVSGSAFTASTVVLLDQVTDINNV 122 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+RSA F D +I + +SPSE+ ++ + +SGA + +P +R+ NL ++ + G+ Sbjct: 123 GAIVRSAACFDVDAVILPEHHSPSENCIITRVSSGAADLVPVVRVGNLVKTMEYLKQNGY 182 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G+ D K L + ++ A+ILG+EGKG+R T+E + + M I +LNVSN Sbjct: 183 WCYGMDVDGDKALHEISFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARINSLNVSN 242 Query: 268 AAAVALYITQNHFAK 282 AAA+ LY + + Sbjct: 243 AAAIVLYSSYLQLHR 257 >gi|53714267|ref|YP_100259.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46] gi|60682323|ref|YP_212467.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis NCTC 9343] gi|253564783|ref|ZP_04842239.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5] gi|265766241|ref|ZP_06094282.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16] gi|52217132|dbj|BAD49725.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46] gi|60493757|emb|CAH08547.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis NCTC 9343] gi|251946248|gb|EES86625.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5] gi|263253909|gb|EEZ25374.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16] gi|301163797|emb|CBW23352.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis 638R] Length = 246 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 101/245 (41%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V A+ I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFTALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I HQG+ + + L + ++LD + D N GAI R+ Sbjct: 63 IT--RKNHQGVVAFISSVTYQKTEDLVPFLFEEGKNPFFVMLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I + S + +A K+++GAL +P R NL LQ + GF+ + + Sbjct: 121 AGVDAVIIPAKGSVTVNADAMKTSAGALHTLPVCREQNLKTTLQYLKDSGFRIVAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE G+ + M G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYTGPMCIIMGAEDTGVSYDNLALCDEWVKIPMLGSIESLNVSVAAGILIYEG 240 Query: 277 QNHFA 281 Sbjct: 241 VKQRT 245 >gi|154508505|ref|ZP_02044147.1| hypothetical protein ACTODO_01006 [Actinomyces odontolyticus ATCC 17982] gi|153798139|gb|EDN80559.1| hypothetical protein ACTODO_01006 [Actinomyces odontolyticus ATCC 17982] Length = 325 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 77/290 (26%), Positives = 130/290 (44%), Gaps = 15/290 (5%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 + K ++ + +H K++R R+ ++ + KS +P + + G + V+ A Sbjct: 38 TPKAEDRTYHP--AHKRKVKREAREAQEAAIARARAKSSIRVKPGHELIAGRNPVAEAAR 95 Query: 63 N--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 P ++F L K+ PV V + +D AVHQG+A+E Sbjct: 96 ASVPIERVFVLDNVKDDRVEEVVRLASAMGAPVYEVTRRDLDVATD-GAVHQGVAIEVRG 154 Query: 121 LLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 LL+ LD V DPHN+GA+LRSA AF DG+I +R S + Sbjct: 155 YEYADASDLIAGSLQQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVN 214 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232 K ++GA +P R++NL AL++ G+ +GL PL + + ++ Sbjct: 215 TTAWKVSAGAAARVPVARVTNLVRALEEAKQAGYFVVGLDGGGDAPLRGLSLADGPLVVV 274 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 GAEG GL +ET + + + +++LN + A +ALY + A+ Sbjct: 275 TGAEGAGLSRLVRETCDQIVSIPIASTVESLNAAVATGIALYEVASLRAQ 324 >gi|29374705|ref|NP_813857.1| RNA methyltransferase [Enterococcus faecalis V583] gi|227555729|ref|ZP_03985776.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis HH22] gi|29342163|gb|AAO79929.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583] gi|227175134|gb|EEI56106.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis HH22] gi|315573947|gb|EFU86138.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0309B] gi|315581898|gb|EFU94089.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0309A] Length = 282 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 68/281 (24%), Positives = 114/281 (40%), Gaps = 23/281 (8%) Query: 22 KLRRNHRDYKKMQSFNQKSRHT-------------SQPENLFLYGVHTVSAALNNPS-RK 67 K ++ K + +++S+ + + F++G H AL K Sbjct: 2 KNEKSRPFKKGKKRSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGRGNK 61 Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 +F + A PVK VP +D + VHQG+ L TL+ Sbjct: 62 LFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTMSDH-GVHQGMVLAITAYQYLTLE 120 Query: 128 A-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + ++LD + DPHN G+ILR+A A DGII K + + + K++ Sbjct: 121 ELLEQTKEKTATPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTKAS 180 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 +GA+EHIP R++NL ++ + F G IALI+G EG+G+ Sbjct: 181 TGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYRRWNT-QGAIALIIGNEGRGM 239 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + + M G +++LN AA + +Y Sbjct: 240 SQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGRN 280 >gi|118473323|ref|YP_890295.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium smegmatis str. MC2 155] gi|254806534|sp|A0R557|Y6073_MYCS2 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MSMEG_6073 gi|118174610|gb|ABK75506.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium smegmatis str. MC2 155] Length = 314 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 71/273 (26%), Positives = 120/273 (43%), Gaps = 14/273 (5%) Query: 21 AKLRRNHRDYKKMQSFNQKSR---HTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK 75 A +R NH KK ++ + + E + G + V L P+ ++ L T Sbjct: 41 AHMRPNHPAAKKARAAAKAQQQRAGRKADETELVLGRNPVLECLRAKVPATALYVALGTD 100 Query: 76 -NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------ 128 + + VP +D++ +HQGL L+ P D Sbjct: 101 ADERVTESVQIAADRGISILEVPRTDLDRMSNH-GLHQGLGLQVPPYAYAHPDDLLATAR 159 Query: 129 -VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 LL+ LD+++DP N+GAI+RS AF+ G++ +R S S +AV ++++GA + Sbjct: 160 ADAAPALLVALDNISDPRNLGAIVRSVAAFAGHGVVIPQRRSASVTAVAWRTSAGAAARV 219 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P R +NL L+ G Q +GL + L++ +++G+EGKGL +E Sbjct: 220 PVARATNLNRTLKSFADAGLQIVGLDAGGDTTLDELDATGPTVVVVGSEGKGLSRLVREH 279 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + M G ++LN S AA V L Sbjct: 280 CDAIVSIPMAGPTESLNASVAAGVVLAEIARQR 312 >gi|25029071|ref|NP_739125.1| hypothetical protein CE2515 [Corynebacterium efficiens YS-314] gi|259505937|ref|ZP_05748839.1| TrmH family group 3 RNA methyltransferase [Corynebacterium efficiens YS-314] gi|23494358|dbj|BAC19325.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259166418|gb|EEW50972.1| TrmH family group 3 RNA methyltransferase [Corynebacterium efficiens YS-314] Length = 313 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 62/266 (23%), Positives = 118/266 (44%), Gaps = 14/266 (5%) Query: 27 HRDYKKMQSFNQKSRHTSQ-PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA--RLDW 83 H +K+ ++ + Q + + G + V L+ L + A RL Sbjct: 46 HAAHKRKLERQRREKGRHQREQTELVVGRNPVLECLHA-RVPSTALYVAEGAANDERLSE 104 Query: 84 DANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQL 134 L PV V +D++ G +HQG+ L P + + Sbjct: 105 SVRLAADRSIPVLEVNKLELDRMTG-NGMHQGIGLAIPPFEYADIHDLLADAAQSPKPGM 163 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++LD++ DP N+GA++RS AF +G+I +R S S +AV ++++G +P + +N Sbjct: 164 FVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARVPVAKETN 223 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 +T +++ G+Q +GL + L+ D + +++G+EGKG+ +E ++ + Sbjct: 224 MTRTIKEFQKNGYQVVGLDAGGDHTLDTYDGTDNVVIVVGSEGKGISRLVRENCDTIMSI 283 Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280 +++LN S AA V L Sbjct: 284 PTEPWVESLNASVAAGVVLSEFARQR 309 >gi|114778983|ref|ZP_01453770.1| RNA methyltransferase, TrmH family, group 3 [Mariprofundus ferrooxydans PV-1] gi|114550782|gb|EAU53352.1| RNA methyltransferase, TrmH family, group 3 [Mariprofundus ferrooxydans PV-1] Length = 247 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 114/242 (47%), Gaps = 11/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT--VPPQTIDKIVGK 107 L G+H V AL+ L+ RL+ +L ++ VP + + ++ Sbjct: 3 VLAGIHAVKHALDAGDSIDELLIEKGKHHPRLNELIHLAKKHSIRFSFVPKEALARLAEG 62 Query: 108 EAVHQGLALET--------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A + + ++++LD V DPHN+GA +R+A A C Sbjct: 63 VPHQGVVAKMVAAGAQAVPTFEAWLKTVDMETAPMVLLLDQVTDPHNLGACVRTAEAAGC 122 Query: 160 DGIITTKRYSPSESAVLAKSASG-ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K ++ + + A+ AL +P +R+ N+ ++++ GF T+GL+ +++ Sbjct: 123 AAVIVLKDHAADVHSPVVAKAACGALSRLPVLRVINMKRCIEQLQQQGFWTVGLAGEAEL 182 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + A+++G+E KG+R +ET + H+ MPG++++LNVS A VAL+ Sbjct: 183 SIYDAKLSGATAVVMGSEDKGVRRLVRETCDQLIHIPMPGVVESLNVSVATGVALFEINR 242 Query: 279 HF 280 Sbjct: 243 QR 244 >gi|134298074|ref|YP_001111570.1| RNA methyltransferase [Desulfotomaculum reducens MI-1] gi|134050774|gb|ABO48745.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum reducens MI-1] Length = 243 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 12/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKI 104 N + G + V AL R I +++ K A + P++ V +DK+ Sbjct: 2 NEMIAGRNPVREALRAG-RPINKVVMAKGAGTGPLAEIVKLAKQNNIPLQMVERSHLDKM 60 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+ A L+ +++LD +NDPHN+GAI+R+A A Sbjct: 61 -NPGVPHQGVIAYAAAKQYVELEELLEIARAKGQDPFIIMLDEINDPHNLGAIMRTADAA 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I +R S + ++ +AK+++GA+E++P R++NL ++++ G +G D Sbjct: 120 GAHGVIIPQRRSVALTSTVAKASAGAVEYVPVARVTNLDQTIRQLKDEGLWVVGADMDGS 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + L++G EGKGL +E + L M G + +LN S AAA+ +Y Sbjct: 180 EIYWDAKLTGPLLLVIGGEGKGLGRLIKERCDMLVRLPMAGRVGSLNASVAAALLVYEVV 239 Query: 278 NHF 280 Sbjct: 240 RQR 242 >gi|238916436|ref|YP_002929953.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750] gi|238871796|gb|ACR71506.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750] Length = 246 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 103/237 (43%), Gaps = 11/237 (4%) Query: 53 GVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 G + V A + K+F L ++ + + V + +D++ G Sbjct: 10 GRNAVLEAFRSGKTIDKLFILDGCQDGPIKSIVREAKKTDAIINYVDKERLDRLAG-TGH 68 Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ A +D + + +LD + DPHN+GAI+R+A G+I Sbjct: 69 HQGVVAIGAAYEYAEVDDILASAKEKGEDPFIFILDEIEDPHNLGAIIRTANLAGAHGVI 128 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 KR + +A +AK+++GA+ + P +++N++ ++++ G + + + Sbjct: 129 IPKRRAVGLTATVAKTSAGAINYTPVAKVTNISQTIEELKKQGLWFVCA-DMGGETMYNL 187 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G EG G+ ++ +A + M G I +LN S AA V Y Sbjct: 188 NLKGPIGLVIGNEGNGVSRLVKDKCDFIASIPMKGDIDSLNASVAAGVLAYEIVRQR 244 >gi|229152759|ref|ZP_04280942.1| RNA methyltransferase, TrmH [Bacillus cereus m1550] gi|228630579|gb|EEK87225.1| RNA methyltransferase, TrmH [Bacillus cereus m1550] Length = 265 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + F+ G H V A Sbjct: 12 MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +L+ + DW N + VP + + E A+ Sbjct: 53 LKTG--IVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKR 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++LD + DP N+G I+R+A A ++ + ++ + +S Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P ++ + + + ++ P + ALI+G EG G+ Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENDVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R + ++ + G ++LNV+ AA + Y Q Sbjct: 223 RQEILAKTNQNLYIPIYGGAESLNVAVAAGILTYYLQ 259 >gi|167586870|ref|ZP_02379258.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ubonensis Bu] Length = 260 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 97/257 (37%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ YK++++ + H + L G H SA L+ + + AT+ AL + Sbjct: 6 SRDNPLYKRLKALAGSTSHQRRSGQALLEGFHLASAYLDTGAIPELCV-ATEGALRHDEA 64 Query: 84 DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A + + V P + + G L P V + +++ D V Sbjct: 65 QAIVARIDAHRLVTLPDALFGQLSNVVNGVGFLLLVDRPSHPLPARVTGTSVVL--DGVQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA A + + + S+ + +S GA + Sbjct: 123 DAGNVGSILRSAAAAGVKHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDIEA---GALA 179 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G S + + + + G EG G+ ++ AT + PG +++ Sbjct: 180 ERIGVPVALTDSHGAQAIYDCDLAGPVVWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ AAAV L+ Sbjct: 240 LNVAAAAAVCLFEQVRQ 256 >gi|297200590|ref|ZP_06917987.1| tRNA/rRNA methyltransferase [Streptomyces sviceus ATCC 29083] gi|197709715|gb|EDY53749.1| tRNA/rRNA methyltransferase [Streptomyces sviceus ATCC 29083] Length = 313 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 67/280 (23%), Positives = 114/280 (40%), Gaps = 14/280 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI---FQ 70 ++ H K R + K+ + + + G + V AL + Q Sbjct: 36 EMRKGH-KKNRIANAKSKQAVRRPAPRGRGGKGTSEMVVGRNPVVEALREGVPAVTLYVQ 94 Query: 71 LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 + R + P +D++ HQGL L+ P + + Sbjct: 95 QFIDNDERVREALQLVAERGGVHLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHAEDL 153 Query: 130 RNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + L++ LD V DP N+GA++RS AF G++ +R + +A K+++G Sbjct: 154 AAAAYDDGADPLIVALDGVTDPRNLGAVVRSVSAFGGHGVLVPERRAAGMTAGAWKTSAG 213 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241 P R +NLT AL+ G +GL++D + + E +A+++G+EGKGL Sbjct: 214 TAARTPVARCTNLTRALEAYRKQGIVVVGLAADGEHEIGDLEALGGPVAIVVGSEGKGLS 273 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + MPG ++LN AA + LY A Sbjct: 274 RLVGETCDYRVRIPMPGGAESLNAGVAAGIVLYEAARRRA 313 >gi|325517967|gb|EGC97790.1| RNA methyltransferase [Burkholderia sp. TJI49] Length = 247 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + + + ++L + + + A + + + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQEFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + S LD + LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDIPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S ++ L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWIIGTSDEASATLH 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A+++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 DTRLDGPVAIVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|299135282|ref|ZP_07028473.1| RNA methyltransferase, TrmH family, group 3 [Afipia sp. 1NLS2] gi|298590259|gb|EFI50463.1| RNA methyltransferase, TrmH family, group 3 [Afipia sp. 1NLS2] Length = 272 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 112/255 (43%), Positives = 156/255 (61%), Gaps = 1/255 (0%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHT-SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 ++ + ++R + + R+ + LYG HTV+ AL NP RKI +L T+NAL Sbjct: 8 SRFKGSNRTPPRGRGGPPHRRNREDRDGPAILYGWHTVTLALANPKRKIRKLFVTENALR 67 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 RL + + V P ID+ +G +AVHQGL E PL + + + +++VLD Sbjct: 68 RLQDENIDLKKLTPEVVRPSVIDQRLGPDAVHQGLLAEADPLPALDISELPQDGIVLVLD 127 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DPHN+GAILRSA AF+ ++TT R+SP + VLAKSASGALE +P + + NL AL Sbjct: 128 QITDPHNVGAILRSAAAFAVKAVVTTARHSPEATGVLAKSASGALELVPVVIVQNLARAL 187 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 +M GF T+GL S+ L + +AL+LGAEGKGLR T+ET ++A L MPG Sbjct: 188 TEMKEHGFLTVGLDSEGSTNLAETELRAPLALVLGAEGKGLRQLTRETCGTVARLDMPGE 247 Query: 260 IKALNVSNAAAVALY 274 IK+LNVSNA A+ALY Sbjct: 248 IKSLNVSNATALALY 262 >gi|325982188|ref|YP_004294590.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas sp. AL212] gi|325531707|gb|ADZ26428.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas sp. AL212] Length = 274 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 54/259 (20%), Positives = 100/259 (38%), Gaps = 6/259 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS---AALNNPSRKIFQLLATKNALAR 80 R+H K++ + S++ + L G+H + + L P I + + Sbjct: 6 SRDHPLIKRLIKLEESSQYRKRTGLTLLDGIHLIQIHCSILGKPENLIVSESYFADTDNK 65 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 D + P T+ ++ + + G+ + R L ++L+ Sbjct: 66 HFMDIIFGYKPPKITIVGDSLFRAISPVKTPTGILALISKPALQGNTHTRKEVLSVLLET 125 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G+ILRSA A + I +K + + S ++A GA + SNL Q Sbjct: 126 IQDPGNLGSILRSAAAANASHIYLSKHCADAWSPKTLRAAMGAHFFLHIYENSNLKQIAQ 185 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + T ++ + A + G EG GL + + A + MPG Sbjct: 186 QFPGTVIATSIQATKNLFE---ISLAGPTAFLFGNEGAGLSAEMIQAAHLNIAITMPGKT 242 Query: 261 KALNVSNAAAVALYITQNH 279 ++LNV+ AAA+ + Sbjct: 243 ESLNVAAAAAICFFEKVRQ 261 >gi|186476081|ref|YP_001857551.1| tRNA/rRNA methyltransferase SpoU [Burkholderia phymatum STM815] gi|184192540|gb|ACC70505.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phymatum STM815] Length = 266 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 104/265 (39%), Gaps = 8/265 (3%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK+++ + + + L G H SA L+ + + T+ AL Sbjct: 2 KAITSRDNPLYKRLKVLAGSTHQQRKSGHALLEGFHLASAYLDVAGQPETCV-VTEGALR 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G+ L L P + V + +++ Sbjct: 61 HDEAQAIVARIDERRIVTLPDALFGQLSNVVNGVGMLLLVEKLDLPLPERVTHGCVVL-- 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +SA GA + Sbjct: 119 DGVQDAGNVGSILRSAAAAGIGHVFCAPGTAYAWSSKVLRSAMGAHFLLQIHEDIEA--- 175 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + S + + + + +A + G EG G+ ++ T + PG Sbjct: 176 PTLIQLLDVPVAITDSHGAEAIYETDLSGPVAWVFGNEGAGVSQPWRDAVTYRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYI-TQNHFAK 282 +++LNV+ AAAV L+ + K Sbjct: 236 GMESLNVAAAAAVCLFEQCRQQRGK 260 >gi|114564515|ref|YP_752029.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella frigidimarina NCIMB 400] gi|114335808|gb|ABI73190.1| RNA methyltransferase, TrmH family, group 3 [Shewanella frigidimarina NCIMB 400] Length = 246 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 111/239 (46%), Gaps = 10/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 ++G+H V A L+N ++ +L + RL NL ++ + +D G Sbjct: 7 IFGIHAVQALLDNSPERVIELWLLQGRDDERLTPLINLASTFGTTLQRAARKVLDDKAG- 65 Query: 108 EAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG+ + L L++LD V DPHN+GA LR+A A Sbjct: 66 SSQHQGIVARVKAVKPLTEKDLDELLDKTAVPFLLILDGVTDPHNLGACLRNADAAGVHA 125 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K S ++ ++K A GA E IP +++NL ++ + G +G + +++ + Sbjct: 126 VIVPKDNSVGLTSTVSKVACGAAETIPLFQVTNLARTMRHLQDKGVWIVGTAGEAEGNVY 185 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +A+ +GAE KGLR ++E S+ + M G + +LNVS A V L+ Sbjct: 186 QADLKGPLAIAMGAEDKGLRRLSREGCDSLVSIPMSGSVSSLNVSVATGVCLFEAVRQR 244 >gi|332292916|ref|YP_004431525.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] gi|332171002|gb|AEE20257.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] Length = 261 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 90/255 (35%), Gaps = 3/255 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K++ KSR + + GV + A+ I ++ + ++ + Sbjct: 9 QNPAVKRLLQLQDKSRARKKEGGFIIEGVREIELAIAAGYE-ITEVYFNEAVISEDEVAG 67 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + + ++ + K+ + +A A + A+ + LL++ + P Sbjct: 68 MVNGTAMMTSLSTEVYQKVAYRAGTEGIIAFAKAETKTLQELALPENPLLLIAEAPEKPG 127 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIGA+LR+A A D +I +S I + + + Sbjct: 128 NIGALLRTADAAGVDAVII-ANPKTDLYNPNIIRSSVGCVFTTQIATGTTAEVISFLQEK 186 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + A+++G E GL + + T + + M G I ++NV Sbjct: 187 GIAVYSAILQEAVDYAAQDYTTPTAIVVGTEATGLSQEWR-TVGTNIKIPMRGKIDSMNV 245 Query: 266 SNAAAVALYITQNHF 280 S AA + ++ + Sbjct: 246 SVAAGILVFEARRQR 260 >gi|284006633|emb|CBA71894.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Arsenophonus nasoniae] Length = 244 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 9/241 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPH-PFPVKTVPPQTIDKI 104 + +YG+H V A L ++ Q+ K + L L ++ Q +D+ Sbjct: 2 SEIIYGIHAVRALLERDPLRLKQVYILKGREDKRLLPIIHQLEKLGIIIQLANRQWMDRQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A D + S L++LD + DPHN+GA LRSA A Sbjct: 62 TENAVHQGIIAEVKPGRQYQESDLDIIISQVPSPFLLILDGITDPHNLGACLRSAEAAGI 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I K S +A K A GA E + + +G + ++ Sbjct: 122 DAVIVPKDKSAQLNATAKKVACGAAE-SVPLIRVTNLARTLRQLQQHIWIVGTAGEANHT 180 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L + IAL++GAEG+G+R T+E + + M G++ +LNVS A V L+ Sbjct: 181 LYESKLTGAIALVMGAEGEGMRRLTREHCDELISIPMAGVVSSLNVSVATGVCLFEAVRQ 240 Query: 280 F 280 Sbjct: 241 R 241 >gi|225017124|ref|ZP_03706316.1| hypothetical protein CLOSTMETH_01049 [Clostridium methylpentosum DSM 5476] gi|224950043|gb|EEG31252.1| hypothetical protein CLOSTMETH_01049 [Clostridium methylpentosum DSM 5476] Length = 258 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 102/239 (42%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V AL R+I + K VK + +D + G Sbjct: 13 IVGRNAVIEALKAG-REIDTIFVAKGERAGSIGQIVSLAKERGIVVKDADSRKLDAMSGG 71 Query: 108 EAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + A+ A + + + +++ D + DPHN+GA++R+A G Sbjct: 72 ASHQGVAAIPCAASYATVEEILASAEQKGEAPFVIIADEIEDPHNLGALIRTAECAGAHG 131 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 I+ KR S S + +++K+++GA+ ++P R+SNL + ++ G + + + Sbjct: 132 ILIPKRRSASLTPIVSKTSAGAVSYLPVARVSNLALEIDRLKERGIW-VYGADMDGENWC 190 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL++G+EG+GL + + L M G + +LN S A + +Y Sbjct: 191 ATDFSGGVALVVGSEGRGLGKLVRSKCDVIVSLPMRGQVNSLNASVAGGILMYEVMRQR 249 >gi|186681662|ref|YP_001864858.1| RNA methyltransferase [Nostoc punctiforme PCC 73102] gi|186464114|gb|ACC79915.1| RNA methyltransferase, TrmH family, group 3 [Nostoc punctiforme PCC 73102] Length = 363 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 69/279 (24%), Positives = 124/279 (44%), Gaps = 25/279 (8%) Query: 26 NHRDYKKMQSFNQKSRHTS-------------QPENLFLYGVHTVSAALNNPSRKIFQLL 72 + + + SR + + +N +YG H V +AL R + ++ Sbjct: 71 RNPRKIDSNTISGNSRQRNSNFSQSPVSTQPIEEDNDIIYGRHPVLSALQ-KQRNLNRIW 129 Query: 73 A----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-- 126 + + + V P+ +D + A HQG+A +TAP L Sbjct: 130 ITTRLRYDPSFHHFLLQAKENGTVIDEVEPKRLDYLT-NGANHQGVAAQTAPYGYIELAD 188 Query: 127 ----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 +++V D + DPHN+GAI+R+A A G++ +R + ++ + K A+G Sbjct: 189 LIEQSKSVTDPVIVVADGITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVMKVAAG 248 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ALE+ R+ NL+ AL+++ GF G ++ +P+ I L++G+EG+GL Sbjct: 249 ALENFTVSRVVNLSRALEELKEAGFWIYGTAASGSEPVHTVNFKGPIVLVIGSEGEGLGM 308 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 TQ + + + + G +LN S AA +ALY + Sbjct: 309 LTQRSCDFLVSIPLQGKTPSLNASVAAGMALYEIYRQRS 347 >gi|95930701|ref|ZP_01313434.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM 684] gi|95133181|gb|EAT14847.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM 684] Length = 244 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 123/240 (51%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 +L+G++ V AL RK+ L RL+ VK + +DK+VG Sbjct: 4 YLFGLNAVFEALGQG-RKVVALYVEAQRNPRLEEIVAQATERHVAVKQCERRQLDKMVGD 62 Query: 108 EAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ + +L + ++ + ++LD + DPHN GA++RSA A C G+ Sbjct: 63 VR-HQGVVAQVKAQDFVSLAQLLAQSSQSERFFLILDGITDPHNFGALIRSAAAAGCQGV 121 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + ++ K+A+G L ++ +++NL A++++ G GL+ + + L + Sbjct: 122 IFAKDRSCPVTGIVEKTAAGTLGYVQLCQVTNLGRAIEELKKAGVWVYGLAGEEGQSLFE 181 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + IAL+ G+EG+G+RP ++ + + MPG +++LNVS A +AL+ + K Sbjct: 182 APLSAPIALVAGSEGRGIRPLIRKLCDGLIAIPMPGRVESLNVSVATGIALFEVVRNHLK 241 >gi|302520120|ref|ZP_07272462.1| tRNA/rRNA methyltransferase [Streptomyces sp. SPB78] gi|302429015|gb|EFL00831.1| tRNA/rRNA methyltransferase [Streptomyces sp. SPB78] Length = 314 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 67/281 (23%), Positives = 119/281 (42%), Gaps = 15/281 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK---IFQ 70 + H K R + K+ Q ++ + + + G + V AL + Q Sbjct: 36 EARKGHV-KNRLANAKAKQTQR-RTAAKSRGKSSSELVVGRNPVFEALRDGVPATALYVQ 93 Query: 71 LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 + R + P +D++ HQGL L+ P + + Sbjct: 94 QFIDNDERVRDALKLAADRGGIHLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDL 152 Query: 130 R-------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + L++ LD V DP N+GAI+RS AF G++ +R + +A KS++G Sbjct: 153 PAAAYDEGDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAG 212 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241 P R++NLT AL+ G +GL++D + + + + + +++G+EGKGL Sbjct: 213 TAARTPVARVTNLTRALEAYKKAGITVVGLAADGEHAVGELAALDGPVVIVIGSEGKGLS 272 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ET + MPG ++LN AA + +Y + A+ Sbjct: 273 RLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRAR 313 >gi|150395253|ref|YP_001325720.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419] gi|150026768|gb|ABR58885.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419] Length = 286 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 97/258 (37%), Gaps = 6/258 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K +++ QK +H + + G+ V AL+ R I L+ K A + + Sbjct: 24 NPIIKDIRALAQK-KHRDETRSFIAEGLKLVIDALDLGWR-IRTLVYAKAAKGKPQVEQV 81 Query: 87 LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 V V + I I ++ + + R + + LD V Sbjct: 82 AAKTVARGGLVLEVSEKVISAITRRDNPQMVIGIFEQRYQPLKDIHPREGETYVALDRVR 141 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+A A GI+ + S ++ G++ +P R + + Sbjct: 142 DPGNLGTIIRTADAAGASGIVLVGETTDPFSLETVRATMGSVFAMPLARANAEDFLRWQR 201 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + + S + + + L++G E GL + A ++A + G + Sbjct: 202 AAGVQVVATHLAGSVDYRTIDYNSKPVVLLMGNEQAGLPVELAREAGALARIPQSGRADS 261 Query: 263 LNVSNAAAVALYITQNHF 280 LN++ A + L+ + H Sbjct: 262 LNLAIATGIMLFEARRHL 279 >gi|113868323|ref|YP_726812.1| rRNA methylase [Ralstonia eutropha H16] gi|113527099|emb|CAJ93444.1| rRNA methylase [Ralstonia eutropha H16] Length = 247 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 110/238 (46%), Gaps = 7/238 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 L G H V+A L ++ + + R D + V + + + G Sbjct: 6 LLIGFHAVTARLRQDAKGVTDVYIESARRDRRMQDFVRLAESLGVRLHPVDAERLRGMAG 65 Query: 107 KEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A L LD + + LL+VLD V DPHN+GA LR A + Sbjct: 66 TDRHQGVVARAEDVALALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADGAGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S +A +AK ASGA E +PYI ++NL L+++ G IG + ++K L Sbjct: 126 IAPKDRSVGLNATVAKVASGAAETVPYITVTNLARTLRELQERGIWVIGTADGTEKSLYD 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A+++GAEG+G+R T+ET + + M G +++LNVS A+ V LY Sbjct: 186 IDFKGPTAIVMGAEGEGMRRLTRETCDELVGIPMAGGVESLNVSVASGVCLYEAVRQR 243 >gi|315499963|ref|YP_004088766.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB 48] gi|315417975|gb|ADU14615.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB 48] Length = 264 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 91/253 (35%), Gaps = 5/253 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 ++ K +++ + + + G+ + AL+ + L A Sbjct: 11 NQTIKDIRALHMR-KEREATRQFLAEGLKIIIDALDQGIAPQILIYGKDADHHPLLQRAI 69 Query: 87 ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 L V V ++KI KE LA+ + + + ++ + L+ V D Sbjct: 70 DETLKARGQVLEVTRDILEKISRKENPQMVLAVFAQRIRRLSEIDPDSHEVWVALEQVRD 129 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+R+A A + G+I S ++ G++ I + + Sbjct: 130 PGNLGTIIRTADAAAIGGVILIGDCVDPFSVETVRATMGSIF-ALPIVKCTREEFIADRG 188 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 W +G +K L++G E GL P+ +T + M G +L Sbjct: 189 RWTGSVVGTLLTAKHDHRSAPYKRPTLLLMGTEQSGLTPEIADTCDLHVKIPMRGRADSL 248 Query: 264 NVSNAAAVALYIT 276 N+S A + +Y Sbjct: 249 NLSVATGIMIYAA 261 >gi|312138101|ref|YP_004005437.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S] gi|311887440|emb|CBH46752.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S] Length = 322 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 69/260 (26%), Positives = 119/260 (45%), Gaps = 13/260 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQLLATK-NALARLDWDANL 87 ++MQ R PE + G + V L + ++ + + + + Sbjct: 64 RQMQRAAAIRRADDSPEMVL--GRNPVVECLRAGVPATALYVAVGAETDDRLKESVQRAA 121 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDH 140 + VP +D++ +HQG+AL+ P D + LL+ LD+ Sbjct: 122 DAGISILEVPRTDLDRMSA-NGMHQGIALQVPPYRYAHPDDLLTAARSRQEPALLVALDN 180 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+GA++RS AF G++ +R S S +AV ++++GA +P R +NLT L+ Sbjct: 181 ITDPRNLGAVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLK 240 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 S G Q +GL + L+ + +++G+EGKGL +ET S+ + M G + Sbjct: 241 DWQSKGVQVVGLDAGGDTSLDNYEGTGPVVIVVGSEGKGLSRLVRETCDSILSIPMAGEV 300 Query: 261 KALNVSNAAAVALYITQNHF 280 ++LN S AA V L Sbjct: 301 ESLNASVAAGVVLSEIARQR 320 >gi|325674995|ref|ZP_08154682.1| RNA methyltransferase [Rhodococcus equi ATCC 33707] gi|325554581|gb|EGD24256.1| RNA methyltransferase [Rhodococcus equi ATCC 33707] Length = 321 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 69/260 (26%), Positives = 119/260 (45%), Gaps = 13/260 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQLLATK-NALARLDWDANL 87 ++MQ R PE + G + V L + ++ + + + + Sbjct: 63 RQMQRAAAIRRADDSPEMVL--GRNPVVECLRAGVPATALYVAVGAETDDRLKESVQRAA 120 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDH 140 + VP +D++ +HQG+AL+ P D + LL+ LD+ Sbjct: 121 DAGISILEVPRTDLDRMSA-NGMHQGIALQVPPYRYAHPDDLLTAARSRQEPALLVALDN 179 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+GA++RS AF G++ +R S S +AV ++++GA +P R +NLT L+ Sbjct: 180 ITDPRNLGAVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLK 239 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 S G Q +GL + L+ + +++G+EGKGL +ET S+ + M G + Sbjct: 240 DWQSKGVQVVGLDAGGDTSLDNYEGTGPVVIVVGSEGKGLSRLVRETCDSILSIPMAGEV 299 Query: 261 KALNVSNAAAVALYITQNHF 280 ++LN S AA V L Sbjct: 300 ESLNASVAAGVVLSEIARQR 319 >gi|125624835|ref|YP_001033318.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|124493643|emb|CAL98630.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|300071633|gb|ADJ61033.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris NZ9000] Length = 242 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 13/244 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102 +YG+H V+ AL + +L ++ + + + P ++ Sbjct: 2 ENTDLIYGLHAVTEAL--NGDLVNKLYVQEDLRGKNVEKIKELARIKKVNISWTPKTELN 59 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 K+ + VHQG + L + +++LD + DPHN+G+I R+A A Sbjct: 60 KLT-ENGVHQGFMARVSEFAYADLATLLPELAEKAEATILILDELTDPHNLGSIARTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II K + + K+++GAL+H+P +R++NL+ L K+ S GF G D Sbjct: 119 TGVDAIIIPKHRAVGITPTAVKASTGALQHVPVVRVTNLSQTLDKLKSAGFWIFGTDMDG 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + K KIALI+G EG G+ ++ M + M G +++LN S AA++ +Y Sbjct: 179 TVYNKWNTK-GKIALIIGNEGHGIGQNLKKQVDEMITIPMVGHVQSLNASVAASILMYEV 237 Query: 277 QNHF 280 + Sbjct: 238 FRNR 241 >gi|161524858|ref|YP_001579870.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|189350392|ref|YP_001946020.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|221197831|ref|ZP_03570877.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD2M] gi|221204611|ref|ZP_03577628.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD2] gi|221213042|ref|ZP_03586018.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD1] gi|160342287|gb|ABX15373.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans ATCC 17616] gi|189334414|dbj|BAG43484.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|221167255|gb|EED99725.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD1] gi|221175468|gb|EEE07898.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD2] gi|221181763|gb|EEE14164.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD2M] Length = 247 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + + + ++L + R D A + + + Sbjct: 6 VLYGFHAVTARLRHDAATVVEVLYDQTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ LS LD ++ LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDLPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S ++ L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A+++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 DTKLDGPVAIVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|297617661|ref|YP_003702820.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophothermus lipocalidus DSM 12680] gi|297145498|gb|ADI02255.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophothermus lipocalidus DSM 12680] Length = 265 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 93/257 (36%), Gaps = 5/257 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R + K ++ + + + GV V A+ P + L+A + Sbjct: 4 SRRNALIKYASRLLER-KARDREGKFLVEGVRMVREAMKRPELVEYVLVACD--VTGEME 60 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + V + P+ + +I E G+ + + L++++D++ D Sbjct: 61 EEFWRDAASVYRIRPELVKEITDTE-NPSGIVAVCRKPVWDWESIPESDGLILIVDNLRD 119 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ILR+A A D + K + + +S+ GA+ H P + + H Sbjct: 120 PGNLGTILRTAWAAGVDAVFLLKGTVDMYNPKVIRSSMGAVFHFPVFERVGNDEVRELCH 179 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + +A+++G E G+ +E S + + + +L Sbjct: 180 RGYRLVV-ADPKASLVFTDADYYGNVAVVIGGETAGISAVFEELPASRVRIPLREGVDSL 238 Query: 264 NVSNAAAVALYITQNHF 280 N + A + LY + Sbjct: 239 NAAVACGIILYEAWSQR 255 >gi|255305697|ref|ZP_05349869.1| putative RNA methylase [Clostridium difficile ATCC 43255] Length = 265 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 107/262 (40%), Gaps = 7/262 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALA 79 +++ K ++ KS++ ++ + G V AL I + K Sbjct: 7 SKDNEKLKYTRALL-KSKNRNKESKFIIEGYRIVMLALECMANLDYVFINEEFENKKEHV 65 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 +L D + + + ++V E + + + + + + +++LD Sbjct: 66 KLLEDLDK-KNTKIYKTTNKNFKELVDTENTQGIIGVVSFKKKKLSESINKKDKFVLILD 124 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N+G I+R+A + D II K + + +S G++ I ++ + + Sbjct: 125 RIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIF-DVNIIDASQDETV 183 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + S F + +++ ++ K+AL++G E G+ + + + + + G Sbjct: 184 DMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGNEANGINEELVSKSDILVKIPIYGK 243 Query: 260 IKALNVSNAAAVALYITQNHFA 281 ++LN + ++A+ +Y + + Sbjct: 244 AESLNAAISSAILMYEIKKYLI 265 >gi|15805774|ref|NP_294471.1| RNA methyltransferase [Deinococcus radiodurans R1] gi|6458456|gb|AAF10325.1|AE001930_6 RNA methyltransferase, TrmH family [Deinococcus radiodurans R1] Length = 246 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 118/241 (48%), Gaps = 9/241 (3%) Query: 50 FLYGVHTVSAALNNPSR-KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 LYG + V AL ++ ++A AR D V+ +P +D++VG Sbjct: 2 LLYGRNPVLEALPAGRVAEVVLARGVEDAFARQVQDLARDAGVRVRWLPRIELDQLVG-T 60 Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ E L T+D + L+++LD V DP N GAI+RSA G Sbjct: 61 TQHQGVVAEVEELQWATVDDILDRAEASGAPLLMVLLDGVTDPRNFGAIIRSAEVLGAHG 120 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S S V+AK+A+GA ++P + NL + ++ + G G + ++ + + Sbjct: 121 VVVEERRSAPLSPVVAKTAAGATAYLPVAQTKNLPRLIDQLKADGVWVYGAAGEAAQDVT 180 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + K AL++GAEG+G+R +E + + + G +++LN S AA + LY Sbjct: 181 RTDFSGKAALVIGAEGEGMRRLVREKCDVLVSIPVRGQVQSLNASVAAGILLYEMTRSRG 240 Query: 282 K 282 K Sbjct: 241 K 241 >gi|229829645|ref|ZP_04455714.1| hypothetical protein GCWU000342_01742 [Shuttleworthia satelles DSM 14600] gi|229791634|gb|EEP27748.1| hypothetical protein GCWU000342_01742 [Shuttleworthia satelles DSM 14600] Length = 278 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 104/275 (37%), Gaps = 21/275 (7%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD- 84 ++ +++ +KSR + G+ V P+ + ++ ++ LA D Sbjct: 6 SNEHVRQVCQLQKKSRIRRKEGLFVAEGLRMVCE---TPAELVREIYVSERFLAEHGEDR 62 Query: 85 ----------ANLPHPFPVK-------TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 A + V ++ + LA+ P Sbjct: 63 GYRDFLDSLEAGRNQNRKTQGGQTGPLEVSDPVMEYMSDTVTPQGILAVVRQPAYQWEEL 122 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + LLM+L+++ DP N+G I R+A GI+ ++ S + +S G+L + Sbjct: 123 LGGHKTLLMILENIQDPGNLGTIFRTAEGAGATGILMSRDTVDLFSPKVIRSTMGSLYRV 182 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P++ +L+ L++ G +K +Q ++G EG GLR T Sbjct: 183 PWLITEDLSSYLKRARESGVCLYAADLQAKCDYDQADCRTACGFLIGNEGSGLRDATAAL 242 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A + + M G +++LN + AA + +Y + Sbjct: 243 AEARIRIPMGGRLESLNAAMAAGILMYEAARQRRR 277 >gi|315652372|ref|ZP_07905361.1| RNA methyltransferase [Eubacterium saburreum DSM 3986] gi|315485346|gb|EFU75739.1| RNA methyltransferase [Eubacterium saburreum DSM 3986] Length = 251 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 98/240 (40%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K++ K+ H V V +D + + Sbjct: 6 VEGRNVVIEAFRSGKTVDKLYIRDGLKDYAISTILREAKKHGTYVNFVSKDRLDGMS-ET 64 Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ A +++ + +LD + DPHN+GAI+R+A G Sbjct: 65 GNHQGVIAIVAAYEYASVEDILEKARQNDEPPFVFILDGIEDPHNLGAIIRTANLCGAHG 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + +A +A++++GA+ + P +++N+ ++++ G + + + Sbjct: 125 VIIPKHRAVGLTAAVARASAGAINYTPVAKVTNINKTMKELKDAGMWFVCA-DMGGEKMY 183 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 I LI+G EG G+ ++ +A + M G I +LN S A V Y Sbjct: 184 NIDLTGSIGLIIGNEGDGVSESVKKNCDFIASIPMKGNIDSLNASVACGVLAYEIVRQRI 243 >gi|291522469|emb|CBK80762.1| rRNA methylase, putative, group 3 [Coprococcus catus GD/7] Length = 247 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 53/238 (22%), Positives = 100/238 (42%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K+F L ++ + + V + +D++ Sbjct: 8 IEGRNPVIEAYRSGKTIDKLFVLDGCQDGPVKTITREARKQHTIISYVSKERLDQLSETH 67 Query: 109 AVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A+ A + D + +LD + DPHN+GAI+R+A G+ Sbjct: 68 HHQGVIAIAAAYDYASVDDILAKAREKGEEPFIFLLDGIEDPHNLGAIIRTANLAGAHGV 127 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K + +A +A++++GAL P +++NL A+ ++ G + + + + Sbjct: 128 IIPKHRAVGLTATVARTSAGALNFTPVAKVTNLGAAMDELKKEGLWFVCA-DMKGEVMYR 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + I L++G EG+G+ +E A + M G I +LN S AA V Y Sbjct: 187 QNLTGPIGLVIGNEGEGVSRLVREKCDFTASIPMKGDIDSLNASVAAGVLAYEIVRQR 244 >gi|291614086|ref|YP_003524243.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus ES-1] gi|291584198|gb|ADE11856.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus ES-1] Length = 261 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 56/258 (21%), Positives = 98/258 (37%), Gaps = 7/258 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82 R++ YK + + +R + L G H + A L+N + LL + Sbjct: 9 SRDNPFYKSLHRISSSARERREAGQTLLDGSHLLRAFLDNGGKPKHLLLNEQAQQDAEIV 68 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + P ++ + GL + A LL+ + + Sbjct: 69 ALLDACVDVPQTQFEDALFAQLS-ELKTPNGLLALIDIPAAQVEVAHSQFALLL--EDIQ 125 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G+ILRSA A CD + + + + S + ++ G + I D L+ Sbjct: 126 DPGNLGSILRSAAAAGCDAVFMSPGCADAWSPKVLRAGMGGHF---ALSILESADLLKVA 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + + + S ++K L K+A +G EG GL P+ A + M G I++ Sbjct: 183 TGFTGKILAASLHARKSLYDCNLRGKLAFAIGNEGAGLSPELLTAAQQHFIIPMQGKIES 242 Query: 263 LNVSNAAAVALYITQNHF 280 LN + A AV L+ Sbjct: 243 LNAAAATAVCLFEASRQR 260 >gi|127514216|ref|YP_001095413.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella loihica PV-4] gi|126639511|gb|ABO25154.1| RNA methyltransferase, TrmH family, group 3 [Shewanella loihica PV-4] Length = 246 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 8/237 (3%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 +G+H V A L N ++ ++ + RL + V+ + +D G Sbjct: 8 FGIHAVEALLKNSPERVIEMWVLQGRDDQRLMPLIAMAAEYGVSVQQASRKALDDKAGSS 67 Query: 109 AVH-----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 A + L + L++LD V DPHN+GA LR+A A G+I Sbjct: 68 QHQGVLVRAKPAKQLNDNDLLALLDKTETPFLLILDGVTDPHNLGACLRNADAAGVHGVI 127 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + S + ++K A GA E +P +++NL ++ + G +G + +++ L + Sbjct: 128 VPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKALQEKGVWIVGAAGEAEHDLYKA 187 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 IA+ +GAE KGLR T+E+ S+A + M G + +LNVS A + L+ Sbjct: 188 DLKGPIAIAMGAEDKGLRRLTRESCDSLASIPMAGSVSSLNVSVATGICLFEAVRQR 244 >gi|258541781|ref|YP_003187214.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-01] gi|256632859|dbj|BAH98834.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-01] gi|256635916|dbj|BAI01885.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-03] gi|256638971|dbj|BAI04933.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-07] gi|256642025|dbj|BAI07980.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-22] gi|256645080|dbj|BAI11028.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-26] gi|256648135|dbj|BAI14076.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-32] gi|256651188|dbj|BAI17122.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654179|dbj|BAI20106.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-12] Length = 280 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 101/264 (38%), Positives = 143/264 (54%), Gaps = 9/264 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQ------PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 R R + ++ S + +L+G H V+AALNNP R +LL T+ Sbjct: 2 RQPRHGRPVRRPRVSSAGGREGAPSAPAGTCWLFGTHAVAAALNNPRRVYERLLVTEENH 61 Query: 79 ARLDWDANLPHPFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLL 135 L+ V + V Q +D ++G +AVHQG+AL L LD + Sbjct: 62 PALEEATRSGRGVRVAPELVQRQRLDDLLGPDAVHQGVALLARVLPPMPLDEALERPGPV 121 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLD V DP NIGAILRSA AF ++ R +P E+AVLAK+ASGALE +P +R NL Sbjct: 122 LVLDQVTDPRNIGAILRSAAAFGAACLVVQDRNAPEETAVLAKAASGALETVPMVREVNL 181 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + A++++ G T+GL + ++AL+LGAEGKGLR T+E+ +A L+ Sbjct: 182 SRAIEQLQKSGCWTVGLDAGGTTLDGASFDGRRVALVLGAEGKGLRRLTRESCDEIAGLY 241 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 MPG +++LNVS AAAV LY Sbjct: 242 MPGEMESLNVSVAAAVGLYELVRR 265 >gi|83942841|ref|ZP_00955302.1| RNA methyltransferase, TrmH family protein, group 3 [Sulfitobacter sp. EE-36] gi|83846934|gb|EAP84810.1| RNA methyltransferase, TrmH family protein, group 3 [Sulfitobacter sp. EE-36] Length = 258 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 89/252 (35%), Positives = 142/252 (56%), Gaps = 7/252 (2%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 K ++ + + ++L+G+H V AL NP+R+ +L+ T NA +L+ Sbjct: 5 KWVVQKEQEKKADANQTVWLFGLHAVRDALENPAREKIKLMVTPNAQIKLEEAIARA-GI 63 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIG 148 + V P+ + +VHQG LE PL L V + +++LD V DPHN+G Sbjct: 64 EPEVVDPRKFRPPLDPGSVHQGAVLEVKPLSWGALKDVCIGAEAPRVLLLDRVTDPHNVG 123 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AILRSA ++ + ++ E+ LAK+ASGALE PY+R+ NL DA++++ S G+ Sbjct: 124 AILRSAEVLGASAVVGMRHHAAPETGALAKTASGALERQPYLRVRNLADAIKELQSMGYL 183 Query: 209 TIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +GL ++ +E ++ +AL+LGAEG GLR KT+ET ++ + G +LNV Sbjct: 184 VLGLDGEADMTVESALVGKRDRPVALVLGAEGPGLREKTKETVDALVRIDAGGGFGSLNV 243 Query: 266 SNAAAVALYITQ 277 SNAAA+ALY ++ Sbjct: 244 SNAAAIALYASR 255 >gi|167589923|ref|ZP_02382311.1| RNA methyltransferase TrmH, group 3 [Burkholderia ubonensis Bu] Length = 247 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + + + ++L + R D A + + + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + S LD ++ LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDIPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S ++ L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|57866640|ref|YP_188303.1| RNA methyltransferase [Staphylococcus epidermidis RP62A] gi|242242436|ref|ZP_04796881.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis W23144] gi|57637298|gb|AAW54086.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis RP62A] gi|242234143|gb|EES36455.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis W23144] Length = 246 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ KI + +K R + + G+H + A Sbjct: 1 MEQITSAQNSKIKNANKL-------------------KKKRERDKTGLALIEGIHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I + + ++ D V + + + + G QG Sbjct: 42 YQSQIEVIQLFIVDPDRMSSSIVDYAK----EVYQINLKVAEALSG-TVTPQGFFAIIKK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 A + ++++D + DP N+G ++R+A A D I+ K + + +++ Sbjct: 97 PTYDKTQAKQ----VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ HIP I Q + + Q AL+LG EG+G+ Sbjct: 153 QGSIFHIPVIFDDIYNYIHQFNGPVYGTALENAVSFNDVEAQANF----ALVLGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P + T + + G ++LNV+ A ++ +Y + Sbjct: 209 NPDLLKETTQNLTIPIYGKAESLNVAIAGSILMYQLK 245 >gi|325479190|gb|EGC82287.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii ACS-065-V-Col13] Length = 234 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 118/231 (51%), Gaps = 6/231 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKE 108 +YG V L+ KI++ K ++ + V + DKI + Sbjct: 4 IYGRKPVLDTLDTDI-KIYKAYILKQNSKLVNKIIGKLEEKNIEISFVDKRFFDKI---D 59 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG+ +E LD + + + L++LD + DPHN+GAI+RSA +F DG++ +R Sbjct: 60 INHQGVMIEVESFKYENLDDLSDEKRLIILDQIEDPHNLGAIIRSAESFGFDGVVIPERR 119 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S S ++ + K+++GA+ +I R+ NLT +++ + GF GL+ ++ +++ K Sbjct: 120 SASVTSTVYKTSAGAINNIKVYRVKNLTRSIKDLKDKGFWIYGLAGEADSSIDKADLTGK 179 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L++G EG G+ ++ + ++ M G + +LN S AA +++Y Sbjct: 180 VGLVVGNEGSGISRLVRDNCDMLVNIPMLGRVNSLNASVAAGISMYELLRQ 230 >gi|300856606|ref|YP_003781590.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528] gi|300436721|gb|ADK16488.1| predicted rRNA methylase [Clostridium ljungdahlii DSM 13528] Length = 260 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 102/282 (36%), Gaps = 28/282 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M++I K + I + ++ ++ Q + G V A Sbjct: 1 MDIIKSKDNAHIKEV-------------------KKLKEKKYRVQEGKFLIEGFRFVREA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L + KI + + + + + + FPV + +V E Sbjct: 42 LYSD-FKISSIFLSSDFTDKWEKLLLKENFQCDFPVYFMEKGVFKAMVNTENPQG----I 96 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 A + + L A ++ D + DP N+G I+RSA A G+I TK + Sbjct: 97 AAVVENRELKASNKEGFYILADKIQDPGNMGTIIRSAHASGALGVIITKGTVDIYNEKTL 156 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S G++ H+P I +L S D+ K+ + +G EG Sbjct: 157 RSTMGSIFHVPVIYDEDLKKVELLRKSGFKLIGSS-LDTDISFYSANLKGKVIIAVGNEG 215 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 GL Q+ + + MPG ++LNVS AA++ ++ Sbjct: 216 NGLSKTIQDISDIKVKIPMPGGAESLNVSAAASIMMFEAVRQ 257 >gi|284033331|ref|YP_003383262.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836] gi|283812624|gb|ADB34463.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836] Length = 279 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 91/259 (35%), Gaps = 9/259 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA--LARLDWDAN 86 K+ + ++ + + G V AL + + ++ A + R D Sbjct: 13 RIKQARRLATRA-FRRKTGRFLVEGPQAVREALEH-RDSVIEVFAEPDVATRHRDLRDLA 70 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 P V ++ + +A+ + + R + L+ V V DP N Sbjct: 71 AAAGVPWYEVDRAGVEALSETVTSQGVVAVCSLVDVPLDEAVRRTASLVAVGVQVRDPGN 130 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 G ++R+A A D ++ + + +++ G+L H+P ++ A + G Sbjct: 131 AGTLIRTADAAGADAVVLSGESVDPHNPKAVRASVGSLFHLPIAVEVDIPAAAKSWRDQG 190 Query: 207 FQ----TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 Q S D + ++ + G E GL + + G ++ Sbjct: 191 VQVLAADGYGSVDLDECIDDGTLAKPTVWLFGNEAHGLPDGFDAIVDRSVKVPIYGRAES 250 Query: 263 LNVSNAAAVALYITQN-HF 280 LN++ AAAV LY + Sbjct: 251 LNLATAAAVCLYASARAQR 269 >gi|225012730|ref|ZP_03703165.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-2A] gi|225003263|gb|EEG41238.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-2A] Length = 264 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 93/253 (36%), Gaps = 1/253 (0%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + + KK++ QK+R + + G + A+ + + A+ + Sbjct: 8 QNPELKKLRLLFQKARERKKLALFVIEGKREIQKAIR-GGYSFESVFIHEEAIGDFESLL 66 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 N ++ +K+ + + +A+ + + + +++V++ P Sbjct: 67 NSVDHVTKYSLEASLFEKLSIRSGSEKIIAIAQNKPHDLSQLKLNKNSIVLVIEAPEKPG 126 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIGA+ R+A A D +I + + +S+ G + +P S++ + Sbjct: 127 NIGALYRTAAAAKIDAVIIANPKTDFYNPNSIRSSLGGIFILPTAIASSIEVIAYLKENK 186 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + P +Q AL++G E GL + M + +LN+ Sbjct: 187 ITIATAAINSKAVPYDQFEYTPPCALVMGTESTGLDQLWLNETNQNLMIPMADEVDSLNL 246 Query: 266 SNAAAVALYITQN 278 S +A + +Y Q Sbjct: 247 SVSAGILMYECQR 259 >gi|118591205|ref|ZP_01548604.1| tRNA/rRNA metyltransferase [Stappia aggregata IAM 12614] gi|118436281|gb|EAV42923.1| tRNA/rRNA metyltransferase [Stappia aggregata IAM 12614] Length = 271 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 110/266 (41%), Positives = 161/266 (60%), Gaps = 7/266 (2%) Query: 18 SHYAKLRRN--HRDYKKMQSFNQKSRHTSQ----PENLFLYGVHTVSAALNNPSRKIFQL 71 S K R ++ + F K + LYG+HTV AA N RK +L Sbjct: 2 SDDKKPSRPAGKPGFRGNKKFGGKPAPRRPGLPPEGPVLLYGLHTVEAAFANKDRKRLKL 61 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131 AT NAL RL + + PV+++ P+ +D++V K+AVHQG+ LE PL + + ++ Sbjct: 62 FATDNALRRL-EERGVKIDVPVESMMPRALDRMVTKDAVHQGMILEADPLPAYGAEHLKG 120 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++L++ LD V DPHN+GAILRSAVA D ++TT+R++P E +VLAKSASGAL+ I ++R Sbjct: 121 ARLVLALDQVTDPHNVGAILRSAVALDADAVVTTERHAPEEGSVLAKSASGALDMIKHVR 180 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + N+ + +M GF I L SD LE+ +DK L+LG+EGKG+R +E Sbjct: 181 VKNMARFIAEMKDEGFSCIALDSDGPASLEETPFSDKTVLVLGSEGKGVRQGVREACGLT 240 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277 A L MPG I++LNVSNAA ++LY+ + Sbjct: 241 ARLDMPGEIRSLNVSNAAVLSLYVAR 266 >gi|262200970|ref|YP_003272178.1| RNA methyltransferase, TrmH family, group 3 [Gordonia bronchialis DSM 43247] gi|262084317|gb|ACY20285.1| RNA methyltransferase, TrmH family, group 3 [Gordonia bronchialis DSM 43247] Length = 316 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 64/272 (23%), Positives = 113/272 (41%), Gaps = 17/272 (6%) Query: 24 RRNHRDYKKMQSFN----QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TK 75 R H +K+ ++ + + + ++ G + V L L Sbjct: 44 RPYHPAHKRAKTAAKPAGRGAPRRKEDGPEYVLGRNPVLECLRAG-VPATALYVASNSEP 102 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------- 128 + + V +D++ +HQG+AL+ D Sbjct: 103 DERVAEAVKIAGDAGIALLEVGKPELDRLST-NGLHQGVALQVPEYTYAHPDDLLAAAKA 161 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 LL+ LD++ DP N+GA++RS AF G++ R S S +AV ++++GA +P Sbjct: 162 SGTPALLVALDNITDPRNLGAVIRSVAAFGGHGVVIPARRSASVTAVAWRTSAGAAARLP 221 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + +NLT L+ G Q +GL +D L+ +++G+EGKGL +E+ Sbjct: 222 VAQATNLTRTLKDWAESGAQLVGLDADGDVTLDDYDGTGPTVIVVGSEGKGLSRLVRESC 281 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 S+ + M G +++LN S AA V L Sbjct: 282 DSILSIPMAGDVESLNASVAAGVVLAEFARQR 313 >gi|110680725|ref|YP_683732.1| RNA methyltransferase [Roseobacter denitrificans OCh 114] gi|109456841|gb|ABG33046.1| RNA methyltransferase, TrmH family, putative [Roseobacter denitrificans OCh 114] Length = 257 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 102/253 (40%), Positives = 147/253 (58%), Gaps = 7/253 (2%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 K ++ + + E ++L+G+H V AL NP+R+ QL+ T NA A+L Sbjct: 5 KWVVRKEQDKKSENRETIWLFGLHAVRDALENPARQKLQLIVTLNAQAKLAGAIEAA-GI 63 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIG 148 + V P+ + +VHQG ALE PL +L+ V +++LD V DPHN+G Sbjct: 64 TPEVVDPRKFSAPLDPGSVHQGAALEVKPLNWGSLEDVCVGAEHPRVLLLDRVTDPHNVG 123 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AILRSA F +I T+ +S E+ LAKSASGALE PY+R+ NL+D ++ + G+ Sbjct: 124 AILRSAEVFGASAVIGTRHHSAPETGALAKSASGALERQPYLRVRNLSDTIRALQGMGYI 183 Query: 209 TIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +GL ++ LEQ I ++ +AL+LGAEG GLR KT+ET S+ + G +LNV Sbjct: 184 VLGLDGEASDTLEQAIEGKRDRPVALVLGAEGPGLREKTKETVDSLVRIDAAGQFGSLNV 243 Query: 266 SNAAAVALYITQN 278 SNAAA+ALY TQ Sbjct: 244 SNAAAIALYATQR 256 >gi|310658445|ref|YP_003936166.1| RNA methyltransferase, trmh family [Clostridium sticklandii DSM 519] gi|308825223|emb|CBH21261.1| RNA methyltransferase, TrmH family [Clostridium sticklandii] Length = 261 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 102/249 (40%), Gaps = 3/249 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ YK S Q S++ + + G+ V A+ NP I+ + ++ + + Sbjct: 8 DNPKYKLAMSLMQ-SKYRKKNQMFLAEGLRNVELAIENPKT-IYLIFIQEDRINEPRYSN 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + + V P + + + QG+ +D + + +++LD + DP Sbjct: 66 IIKNTGDKSFVVPSKLMETISDTVTSQGIVAICNFESFM-IDDIDFNNDILILDKIQDPG 124 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ILR+A A +I TK + S+ + +SA G+L H+ + I + + Sbjct: 125 NLGTILRTADAAGISTVICTKGTTDIYSSKVVRSAMGSLMHLKILFIDDYESLNILKKND 184 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 ++ K+A++LG E G+ K + + + G ++LNV Sbjct: 185 YKIISSSLENALDYNVLSTIQSKVAIVLGNEANGIDDKLLNLSDIKVKIPLYGAAESLNV 244 Query: 266 SNAAAVALY 274 A + +Y Sbjct: 245 GIAGGILMY 253 >gi|312870534|ref|ZP_07730652.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3] gi|311093931|gb|EFQ52257.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3] Length = 257 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 48/253 (18%), Positives = 96/253 (37%), Gaps = 6/253 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ K + K + Q L G H V+ A+ ++ + QL+ T + LA Sbjct: 8 HNQHVKNWKKLQTK-KFRRQSGEYLLDGWHLVNEAVKAGNQ-LRQLIGTADQLAAHQDLV 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V P+ + + A+ P ++ + LL+ D V DP Sbjct: 66 ARAA--EAYVVTPEIMQHVTDTVTPQGIAAVVDLPDAHRVPANIQGAWLLL--DRVQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ++R+A A G++ R + + +S G+ H+ + Sbjct: 122 NVGTMVRTADAAGFTGVVVGDRSADIFGPKVVRSMQGSQFHLTLLEGDLHKWIQDFKQLG 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + K ALI+G EG+G+ + T+ ++ M G ++LNV Sbjct: 182 APVYGTQLNPAAKNFRDVHPGQTFALIMGNEGQGMAADLLKETTANLYIPMRGDAESLNV 241 Query: 266 SNAAAVALYITQN 278 + +A + ++ Sbjct: 242 AVSAGILMFQLNR 254 >gi|186476454|ref|YP_001857924.1| RNA methyltransferase [Burkholderia phymatum STM815] gi|184192913|gb|ACC70878.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia phymatum STM815] Length = 247 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 114/239 (47%), Gaps = 7/239 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + + ++ + + + + + Sbjct: 6 VLYGFHAVTARLRHDPSSVEEIYYDQTRRDRRMNEFLAVAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E +A A L+ LD ++ LL+VLD + DPHN+GA LR A A + Sbjct: 66 TERHQGVVARAGDVPLAQNLAELLDGIQGPPLLLVLDGITDPHNLGACLRVADAAGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + + +A AK ASGA + +PYI ++NL AL+++ G +G + ++ L + Sbjct: 126 IAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGIWVVGTAGEATASLYE 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V L+ A Sbjct: 186 TKLDGPVALVMGAEGEGMRRLTRDTCDEVMQIPMAGSVESLNVSVASGVCLFEAVRQRA 244 >gi|294084964|ref|YP_003551724.1| tRNA/rRNA methyltransferase SpoU [Candidatus Puniceispirillum marinum IMCC1322] gi|292664539|gb|ADE39640.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Puniceispirillum marinum IMCC1322] Length = 307 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 102/279 (36%), Gaps = 11/279 (3%) Query: 12 IFSLKDSHYAKL-----RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 I +K++H+ + + + K +++ +++ ++ Q G + A+ Sbjct: 29 IALMKNNHHVTIPAPITSTANAEVKFLRALHER-KYRRQSGWFLAEGTRICNEAVALGWD 87 Query: 67 KIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 R DA + + + +I K+ L Sbjct: 88 MHRLAFLAGRDNETHVRKLLDALDRADGRALPMSEKLLQRISRKDNPQMLLGAFRQKWTD 147 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 S+ + LD V DP N+G I+RSA A GII + S +++ GA Sbjct: 148 LDAVTPDLSRPWVALDRVRDPGNLGTIMRSADAAGAKGIILIDDCTDPYSVEAVRASMGA 207 Query: 184 LEHIPYIRISNLTD--ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 + ++ ++ + Q+ + Q IG + + + + +++G E GL Sbjct: 208 IFNVEIVQCNQSDFVAFTQQWTNQNGQIIGTALPASVDYRDADYSGALMILMGNEQAGLP 267 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 P + T + L M G +LN++ A V LY + Sbjct: 268 PSLMQLCTQLIRLPMLGRSDSLNLAVATGVTLYEVLRNR 306 >gi|255263708|ref|ZP_05343050.1| RNA methyltransferase, TrmH family, group 3 [Thalassiobium sp. R2A62] gi|255106043|gb|EET48717.1| RNA methyltransferase, TrmH family, group 3 [Thalassiobium sp. R2A62] Length = 260 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 91/249 (36%), Positives = 142/249 (57%), Gaps = 9/249 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++S+ + E ++L+G+H V AL NP R +L+ TKNA +L D + Sbjct: 10 KERSKRAAAAETVWLFGLHAVRDALLNPKRVKLRLIVTKNAHDKLAEDIG-ASGMEPEMS 68 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAIL 151 P+ + ++VHQG ALE L L+ V + +++LD V DPHN+GA+L Sbjct: 69 DPRKFAAPIDPQSVHQGAALEVKGLDWGKLEDVCLGEEGRAPRVVLLDRVTDPHNVGAVL 128 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F ++ R++ E+ LAK+ASGALE PY+R+ NL DA++ + G+ +G Sbjct: 129 RSAEVFGASAVVAMSRHAAPETGALAKTASGALERQPYVRVRNLADAMETLKGMGYIVLG 188 Query: 212 LSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 L +++ + ++ +AL+LGAEG GLR KT+ET ++ + G +LNVSNA Sbjct: 189 LDGEAEGTIGAALEGKRDRPVALVLGAEGPGLREKTKETCDALVKIDFAGGFGSLNVSNA 248 Query: 269 AAVALYITQ 277 AAVALY ++ Sbjct: 249 AAVALYASR 257 >gi|257093550|ref|YP_003167191.1| TrmH family RNA methyltransferase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046074|gb|ACV35262.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 250 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 106/240 (44%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G H+ A L + + ++ +A R V V P ++ + Sbjct: 7 LIFGFHSTLAKLRHDPGAVREIYVDASRHDARLRDLVAHAEFAAVRVMPVDPARLEALA- 65 Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ L LD + L+VLD + DPHN+GA LR A A Sbjct: 66 PGARHQGVIATVGATQRHVTLDDVLDTLDEPPFLLVLDGIQDPHNLGACLRVADAVGAHA 125 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + + K ASGA E +PYI ++NL AL++M IG + +K L Sbjct: 126 VIAPKDRAVGLTQTAVKVASGAAETVPYITVTNLARALREMKERDIWVIGTDALAKDDLY 185 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + A +LGAEG GLR T+ET + + M G + +LNVS A V LY + Sbjct: 186 AAQWSTATAWVLGAEGDGLRRLTRETCDQLVSIPMLGSVASLNVSVATGVCLYEARRRRN 245 >gi|229916372|ref|YP_002885018.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sp. AT1b] gi|229467801|gb|ACQ69573.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sp. AT1b] Length = 248 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 102/274 (37%), Gaps = 31/274 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ KSE I LK + + + G H V A Sbjct: 1 MTKITSTKSETIKRLKRLMTK-------------------KGRQETGQFLVEGEHLVDEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + ++ QL+ ++ + W PV + D + E A+ Sbjct: 42 IRAG--RLVQLIMAESYSPKGTWRL---EDMPVLELSDHVADLLSETEKTQGVFAVVKMT 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + R + ++VLD V DP N+G ++R+A A D ++ K +A + ++ Sbjct: 97 PVE------RKMKKVLVLDRVQDPGNLGTMIRTADAAGFDTVLLGKGTVDPFNAKVVRAT 150 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+L H+ + L + S + + +K+AL++G E +G+ Sbjct: 151 QGSLFHVNVTSVDLLEKLPELKEDGFHVYGTALSKATSYEQVA-FEEKVALVIGNEAQGV 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + H+ + G +++LN + AA + +Y Sbjct: 210 HADVLALCDTRVHIPVLGDVESLNAAVAAGILMY 243 >gi|319941489|ref|ZP_08015817.1| RNA methyltransferase TrmH [Sutterella wadsworthensis 3_1_45B] gi|319805109|gb|EFW01939.1| RNA methyltransferase TrmH [Sutterella wadsworthensis 3_1_45B] Length = 323 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 63/261 (24%), Positives = 113/261 (43%), Gaps = 7/261 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWD 84 R+ ++ +R ++ + L G H V+A L I Q+ ++ R + Sbjct: 49 RERSDRTERSRPARIRTEAGTVVLAGFHAVAARLKLDPESIQQVYVDPERRDKRMREMRE 108 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDH 140 V +D + A+ + LD + + LL++LD Sbjct: 109 KLFAAGVRVMNADAARLDGLSPDVPHQGIAAIAAERENTLDFADLLDQITDRTLLLILDG 168 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N GA LR+A A +I + S + AK+A+GA E +P + ++NL A+ Sbjct: 169 VTDPRNFGACLRAADAAGVQAVIVPRDRSARMTPAAAKAAAGAAETVPVVSVTNLASAIM 228 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 ++ G G + ++ + + A +LGAEG+GLR T+ +A + M G + Sbjct: 229 ELRDNGVFVAGTAGETDTTIYDVAQARAFAWVLGAEGEGLRQLTRRRCDVLAAIPMVGSV 288 Query: 261 KALNVSNAAAVALYITQNHFA 281 ++LNVS A+ + L+ + Sbjct: 289 ESLNVSVASGICLFESLRQRI 309 >gi|163857018|ref|YP_001631316.1| putative tRNA/rRNA methyltransferase [Bordetella petrii DSM 12804] gi|163260746|emb|CAP43048.1| putative tRNA/rRNA methyltransferase [Bordetella petrii] Length = 245 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 110/240 (45%), Gaps = 7/240 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIVG 106 L G H V A L + I + + + + V V + +D + Sbjct: 6 VLAGFHAVVARLRHAPESIKDIYVEASRRDKRMLAFLEQAERAGRRVHPVSAERLDGLAR 65 Query: 107 KEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +AL LL+ LD + LL+VLD V DPHN+GA LR+A A + Sbjct: 66 GTRHQGVVALAEERLLAVDVDEVLDTIEGPALLLVLDGVTDPHNLGACLRTADAAGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + + + ++ + + A GA + +PYI ++NL L+ + G +G + L Sbjct: 126 VAPRDRAVGLNSTVQRVACGAADTVPYITVTNLARTLRGLKERGVWVVGTDDQAAGSLHT 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +A ++GAEG+G+R T+ET + ++ M G +++LNVS A+AV LY + + Sbjct: 186 VDARQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYESVRQRRE 245 >gi|241889512|ref|ZP_04776811.1| putative tRNA/rRNA methyltransferase [Gemella haemolysans ATCC 10379] gi|241863819|gb|EER68202.1| putative tRNA/rRNA methyltransferase [Gemella haemolysans ATCC 10379] Length = 251 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 52/279 (18%), Positives = 109/279 (39%), Gaps = 28/279 (10%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 +I+ +++I ++ + +++ K + + G H V AL+ Sbjct: 1 MITSASNKRIKDIQKL------KENKNIK-------------KYGRYLIEGKHLVEEALD 41 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 K+ + + + + + V + I +A+ Sbjct: 42 A---KVVEEIIVSESFEEYNIVDSFEGDL--IKVTDSVLKSISDTITSQGIIAVCRIVKK 96 Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 ++ +++LD + DP N+G I+R+A AF+ D II K + + +S G Sbjct: 97 ELDINNYSK---VLILDKIQDPGNLGTIIRTADAFNFDCIILGKGTTSLYGQKVIRSTQG 153 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + HI +L + + +MH + L +D I K+A++ G EG G+ Sbjct: 154 SNFHIDCFDNIDLVELIDEMHEFNIFATSLKADKYIEQLDNI-TGKVAVVFGNEGAGVSE 212 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + ++ + MPG ++LNVS AA + ++ + Sbjct: 213 EILSKVNNLLKISMPGRAESLNVSIAAGIVMHYISTNLK 251 >gi|92113015|ref|YP_572943.1| RNA methyltransferase TrmH, group 3 [Chromohalobacter salexigens DSM 3043] gi|91796105|gb|ABE58244.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Chromohalobacter salexigens DSM 3043] Length = 261 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 76/259 (29%), Positives = 121/259 (46%), Gaps = 12/259 (4%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--P 90 M+ + ++R + +YGVH V A + A ARL+ L Sbjct: 1 MKGKSSRTRVATPEGLDAVYGVHAVRALFERGQPPRELWIQEGRAEARLEALVALARQAG 60 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---------AVRNSQLLMVLDHV 141 V +T+D V + AVHQG+ PL + + + + LL++LD V Sbjct: 61 VKCAGVARETLDG-VARGAVHQGVIAFAPPLQAESEEALWFRLGAWQQSSPPLLLILDGV 119 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DPHN GA LRSA A G+I K + +A + K A GA + P +++NL A+ + Sbjct: 120 TDPHNFGACLRSADAAGAHGVIVPKDKAAPLNATVRKVACGAADVTPVYQVTNLARAMGR 179 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + G +G + +S + L +A+++GAEGKG+R T++ +A L M G + Sbjct: 180 LKTHGVWIVGTAGESAQCLYDIDLAGPLAVVMGAEGKGMRRLTRDACDLLAKLPMAGSVS 239 Query: 262 ALNVSNAAAVALYITQNHF 280 +LNVS A V L+ Sbjct: 240 SLNVSVATGVCLFEAVRQR 258 >gi|91775460|ref|YP_545216.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT] gi|91709447|gb|ABE49375.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT] Length = 260 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 92/256 (35%), Gaps = 8/256 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ +K+++ +R + L G H ++A + + A + + Sbjct: 8 SRDNSLFKQLKKLADNARERRKHNETLLDGPHLLTAYIERFGMPKLLVTAEGESTNEVVG 67 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + P ++ A G+ P + L++L+ + D Sbjct: 68 LLQVLADVPTVMFTTLMFAELS-PVATPTGILALVDIPQQPVPEQPD---FLLMLEDIQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G++LRSA A + + + + + S + GA I L+ + Sbjct: 124 PGNLGSMLRSAAAAGVEVVYLSLGCADAWSPKALRGGQGAQF----ILPIVERADLENVT 179 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 ++ + L + A ++G EG GL + A+ + M G +++L Sbjct: 180 RGFAGQTLATTLMGESLYEMDLQPPTAFMIGNEGTGLSETLIKAASRQVSIPMAGQVESL 239 Query: 264 NVSNAAAVALYITQNH 279 N + A A+ L+ Sbjct: 240 NAAAATAICLFERSRQ 255 >gi|241202807|ref|YP_002973903.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856697|gb|ACS54364.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 286 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 94/258 (36%), Gaps = 6/258 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K +++ K + + G+ + A+ I L+ K A + + Sbjct: 24 NPIIKDIKALTNK-KSREESGTFLAEGLKLIIDAIELGW-AIRTLVYAKAAKGKPLVEQM 81 Query: 87 LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 V V + I I ++ + + + + + + LD V Sbjct: 82 AAKTVASGGLVLEVSEKVIASITRRDNPQMVVGIFEQRWTPLKGIRLSDGETWVALDRVR 141 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+A A GII + S ++ G++ +P R + + Sbjct: 142 DPGNLGTIIRTADAAGASGIILLGETTDPFSLETVRATMGSVFAVPVARATPEEFIAWRK 201 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + + + + + + L++G E GL + A ++A + G + Sbjct: 202 SAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQLAREADALARIPQQGRADS 261 Query: 263 LNVSNAAAVALYITQNHF 280 LN++ A AV L+ + H Sbjct: 262 LNLAVATAVMLFEARRHL 279 >gi|289422379|ref|ZP_06424225.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus anaerobius 653-L] gi|289157214|gb|EFD05833.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus anaerobius 653-L] Length = 260 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 105/254 (41%), Gaps = 6/254 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALAR 80 +++ +K +S +++ ++ G T+ A+ + I + + N ++ Sbjct: 5 SKDNDKFKLTKSLLT-TKYRNKEGKYIAEGQRTIELAIEYGA-SIEFVFVNERFYNDPSK 62 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 A+L V + ++V E LA+ + + ++V+D Sbjct: 63 GVLIASLKESTHVYILDDSLFRQVVTTENSQGILAVINKKKMDSEDFNKNKHKKIVVVDR 122 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A D II K + + +SA G++ + + + +A Sbjct: 123 VQDPGNMGTIIRTADAAGFDLIICIKGTVDYYNPKVVRSAMGSMFY-MDMMSLDNEEARD 181 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + D++ ++ + AL++G E G+ + + + M G Sbjct: 182 LLKVNDIDIVSSYLDTENYYDKVDYKENTALVVGNEANGISDFWIRQSDVLVKIPMFGKA 241 Query: 261 KALNVSNAAAVALY 274 ++LNV+ ++A+ +Y Sbjct: 242 ESLNVAVSSALLMY 255 >gi|119718239|ref|YP_925204.1| RNA methyltransferase [Nocardioides sp. JS614] gi|119538900|gb|ABL83517.1| RNA methyltransferase, TrmH family, group 3 [Nocardioides sp. JS614] Length = 314 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 65/278 (23%), Positives = 116/278 (41%), Gaps = 18/278 (6%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATK 75 + + H+ K+ + + + ++ G ++V AL + + + Sbjct: 39 KAKDRPYHQAHKAAKRAEKSATRRPKRKTAGDAEWVAGRNSVVEALRAG-VPVTGVYVAE 97 Query: 76 NA----LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--- 128 A R + ++ V +D++ G AVHQGLA P D Sbjct: 98 GAERDGRLREAFATAAERRLNIQEVSRGELDRMTG-GAVHQGLAARIPPYEYAHPDDLLD 156 Query: 129 ----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++ LD V DP N+GA++RSA F G++ +R S +A K+++GA Sbjct: 157 AAAESGAPPLIVALDSVTDPRNLGAVVRSASGFGAHGVVIPERRSAGMTASAWKTSAGAA 216 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPK 243 +P + NL L+ G +GL++D L + + +++G+EG GL Sbjct: 217 ARLPVAQTVNLVRQLKAYQEAGCMVVGLAADGDVSLPDLDLADGPLVVVVGSEGSGLSRL 276 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY---ITQN 278 ET + + M +++LN AA+VALY + Sbjct: 277 VSETCDQLVSIPMANQLESLNAGVAASVALYAISEARR 314 >gi|257884108|ref|ZP_05663761.1| rRNA methyltransferase [Enterococcus faecium 1,231,501] gi|257819946|gb|EEV47094.1| rRNA methyltransferase [Enterococcus faecium 1,231,501] Length = 254 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 101/276 (36%), Gaps = 24/276 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ KI K ++ + L G H + A Sbjct: 1 MKEIQSAKNPKIK-------------------ELKKLHKKKYREEKAEYLLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ + + V + + + LA+ T Sbjct: 42 -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQGILAVMTL- 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + D S ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 100 ---TSEDTPDFSGGWLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P ++ ++ L++ K + A+I+G EG+G+ Sbjct: 157 QGSNYHLPVLQKDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGV 216 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + ++ M G ++LNV AA + LY Sbjct: 217 SQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252 >gi|319401549|gb|EFV89759.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Staphylococcus epidermidis FRI909] Length = 246 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ KI + +K R + + G+H + A Sbjct: 1 MEQITSAQNSKIKNANKL-------------------KKKRERDKTGLALIEGIHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I + + ++ D V + + + + G QG Sbjct: 42 YQSQIEVIQLFIVDPDRMSSSIVDYAK----EVYQINLKVAEALSG-TVTPQGFFAIIKK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 A + ++++D + DP N+G ++R+A A D I+ K + + +++ Sbjct: 97 PTYDKTQAKQ----VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ HIP I Q + + Q AL+LG EG+G+ Sbjct: 153 QGSIFHIPVIFDDINNYIHQFNGPVYGTALENAVSFNDVEAQANF----ALVLGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P + T + + G ++LNV+ A ++ +Y + Sbjct: 209 NPDLLKETTQNLTIPIYGKAESLNVAIAGSILMYQLK 245 >gi|240143678|ref|ZP_04742279.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82] gi|257204355|gb|EEV02640.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82] Length = 281 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 93/277 (33%), Gaps = 25/277 (9%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL------------- 72 +++ K + +K++ ++ G A P + Q+ Sbjct: 6 SNQQMKNLTLLMKKAKARNEQGVFVAEGRKMFLEA---PVEWVKQVYVSESFYGTCTQGN 62 Query: 73 ---ATKNALARLDWD------ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 ++ + + + + V + + L + P + Sbjct: 63 MQDCMESCTPKHGEEKLNRKVLERLNETGYEIVSDNVFKSVSDTQTPQGILCVIKKPEYA 122 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 L++L+ + DP N+G ++R+ G+I + + +S G+ Sbjct: 123 LEELIKGEQTHLLILESIQDPGNLGTMVRTGEGAGITGVIMNQTTVDLFNPKTIRSTMGS 182 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + +P+ +L + + ++ K A ++G EG GL + Sbjct: 183 IYRVPFFITKDLAGTISSLKEQQVNVYAAHLKGTLSYDEPDYKKKTAFLIGNEGNGLSDE 242 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + + M G +++LN + +A++ +Y T Sbjct: 243 IADLADTYIKIPMQGQVESLNAAISASLLMYETGRQR 279 >gi|222147334|ref|YP_002548291.1| rRNA methylase [Agrobacterium vitis S4] gi|221734324|gb|ACM35287.1| rRNA methylase [Agrobacterium vitis S4] Length = 294 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 93/257 (36%), Gaps = 4/257 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K +++ +QK + + G+ V A+ + + + Sbjct: 32 NPIVKDIKALSQK-KTRDETRTFLAEGLKLVIDAVELGWSLRYLIYSKAAKGKPQVERIA 90 Query: 87 L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 H V V + + I K+ + + ++ + + LD V D Sbjct: 91 ARTVAHGGMVLEVSEKVMASITRKDNPQMVAGVFDQRWKALKDVSLTEGETWVALDRVRD 150 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+R+A A G++ + + ++ G++ +P ++ + K Sbjct: 151 PGNLGTIIRTADAAGASGVMLIGDSTDPFAMETVRATMGSIFALPLVKTTVADFLGWKTK 210 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + + K + +++G E GL + A +A + G+ +L Sbjct: 211 AGVSVVATHLAGAVDYRTVDYKRRPVVVLMGNEQSGLPEELASRADMLARIPQAGLADSL 270 Query: 264 NVSNAAAVALYITQNHF 280 N++ A V L+ + H Sbjct: 271 NLAVATGVMLFEARRHL 287 >gi|225568314|ref|ZP_03777339.1| hypothetical protein CLOHYLEM_04389 [Clostridium hylemonae DSM 15053] gi|225162843|gb|EEG75462.1| hypothetical protein CLOHYLEM_04389 [Clostridium hylemonae DSM 15053] Length = 250 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 11/247 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTI 101 + L + G + V A + R I +L ++ R H + V + + Sbjct: 5 KESELMIEGRNAVLEAFRSG-RPIDKLFVLDGCQDGPVRTIVREAKKHDTVLNFVTKERL 63 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ +A A + D + +LD++ DPHN+GAI+R+A Sbjct: 64 SQMSETGRHQGVIAYGAAYEYAGVDDMLALAEERGEDPFIFLLDNIEDPHNLGAIIRTAN 123 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 G+I KR + +A +A++++GAL + P +++NL ++++ G + Sbjct: 124 LAGAHGVIIPKRRASGLTATVARTSAGALNYTPVAKVTNLVKTMEELKEKGLWFVCA-DM 182 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + + I L++G EG+G+ +ET A + M G I +LN S AA V Y Sbjct: 183 DGESMYRLNLTGPIGLVIGNEGEGVGRLVKETCDFAAGIPMKGNIDSLNASVAAGVLAYE 242 Query: 276 TQNHFAK 282 + Sbjct: 243 IVRQRIQ 249 >gi|167619604|ref|ZP_02388235.1| RNA methyltransferase, TrmH family protein [Burkholderia thailandensis Bt4] gi|257138775|ref|ZP_05587037.1| RNA methyltransferase [Burkholderia thailandensis E264] Length = 262 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 105/261 (40%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + L G+H SA L+ + + T AL+ Sbjct: 2 KAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCV-VTDGALS 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + + P + V P + + GL L A + V N+ +++ Sbjct: 61 HAEARETVARIEPARVVTLPDALFGQLSNVVNGVGLLLLVARPAPALPERVSNTSVVL-- 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +SA GA + + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ S + + +A + G EG G+ + ++ AT + PG Sbjct: 179 IE---RLAIPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRWRDAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256 >gi|148981039|ref|ZP_01816259.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrionales bacterium SWAT-3] gi|145961015|gb|EDK26338.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrionales bacterium SWAT-3] Length = 246 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K ++ + + +D Sbjct: 3 NEFIYGIHAVKAVLEKDPARFIEAYVLKGRQDERLLPLLNQLQQFGVSIQQMGRKPLDDK 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQG+ + P LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-QGANHQGIIAKVKPAKQLNETHLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAVVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|52424529|ref|YP_087666.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia succiniciproducens MBEL55E] gi|52306581|gb|AAU37081.1| SpoU protein [Mannheimia succiniciproducens MBEL55E] Length = 245 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 107/240 (44%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V++ L ++ ++ K RL H V+ + QT+D Sbjct: 5 IYGIHAVNSFLATAPERLIEVYVLKGREDKRLQPLLKELHQLGISVQFLNRQTLDNKANG 64 Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ P + LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGIIARVQPAKELNENDLERILSNNKDPLLLVLDGVTDPHNLGACLRTADAAGVCA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220 +I K S +++ K A GA E +P IR++NL L+ + + ++ Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAEVVPLIRVTNLARTLRDLQQSHNIWVVGTAGEATETL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQTKLIGPLALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|258508716|ref|YP_003171467.1| rRNA methyltransferase [Lactobacillus rhamnosus GG] gi|257148643|emb|CAR87616.1| rRNA methyltransferase [Lactobacillus rhamnosus GG] gi|259650023|dbj|BAI42185.1| rRNA methylase [Lactobacillus rhamnosus GG] Length = 253 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 100/276 (36%), Gaps = 26/276 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS K+++I + K +H L G H V A Sbjct: 1 MEYISSPKNDRIKTAKKLTVK-------------------KHQKDAGRYLLEGRHLVQEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + + AT+ +D A P + + + + E QG+ Sbjct: 42 LASGQTP-YDIYATEKY---VDDRALKPFYDKITQISESVSEHLSDTE-TPQGIFAVMPR 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + LL+ D + DP N+G ++R+A A +I + + + ++ Sbjct: 97 QAGQLPDLLSGQFLLL--DAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLRAM 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+ + + + +D K + + L++G EG G+ Sbjct: 155 QGSQFHVRIVSAKLMPVIKALQRAGIPVYGSELNDKAKSYRSIQPSAQFGLVVGNEGNGM 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P + + ++ + G ++LNV+ AAA+ ++ Sbjct: 215 DPVLLKQTDTNLYIPIRGQAESLNVAVAAAIMMFHL 250 >gi|225026002|ref|ZP_03715194.1| hypothetical protein EUBHAL_00240 [Eubacterium hallii DSM 3353] gi|224956652|gb|EEG37861.1| hypothetical protein EUBHAL_00240 [Eubacterium hallii DSM 3353] Length = 251 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K+F L ++ + +K V + +D + E Sbjct: 12 VVGRNAVMEAYRSGKTIDKLFILDGCQDGPIKSILREARKRDTLIKFVSKEKLDSLSFHE 71 Query: 109 AVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A+ A + D + + ++ D + DPHN+GAI+R+A G+ Sbjct: 72 KHQGVVAIAAAYEYATVEDLFKKAEEKGEAPFFILCDEIEDPHNLGAIIRTANLAGAHGV 131 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I KR + ++ +AK ++GAL + P R++NL+ + ++ G + + + Sbjct: 132 IIPKRRAVGLTSTVAKVSAGALNYTPVARVTNLSRTIDELKDKGMWFVCG-DMGGELMYD 190 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I LI+G EG G+ +E +A + M G I +LN S A V + Sbjct: 191 LNLTGSIGLIIGNEGNGVSRLVKEKCDYIASIPMKGDIDSLNASVATGVLAFEIVRQR 248 >gi|332995266|gb|AEF05321.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas sp. SN2] Length = 245 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 8/243 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102 + +LYG+H + + L ++ +++ K RL N V+ + +D Sbjct: 2 AQQEWLYGLHAMQSVLEQEPERVMEVMVLKGRNDERLTNIVNQARRFGISVQFCQRKALD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E +A + D + LL+VLD + DPHN+GA LR+A Sbjct: 62 DKVNGEQHQGVVARAKPARVMDEADLDRILDKESKPLLLVLDGITDPHNLGACLRTADGA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 ++ K S S + + K A GA E IP I+++NL L+ + G +G + ++ Sbjct: 122 GVHAVVVPKDKSASLNGTVRKVACGAAEVIPLIQVTNLARTLKHLQDKGLWIVGTAGETD 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K L + AL++GAEGKG+R T+ET + L M G + +LNVS A V LY Sbjct: 182 KTLYDIKLDGPTALVMGAEGKGMRRLTKETCDELVKLPMAGSVSSLNVSVATGVCLYEIV 241 Query: 278 NHF 280 Sbjct: 242 RQR 244 >gi|251809948|ref|ZP_04824421.1| RNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|282875018|ref|ZP_06283893.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis SK135] gi|251806491|gb|EES59148.1| RNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|281296346|gb|EFA88865.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis SK135] gi|329729435|gb|EGG65838.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis VCU144] gi|329734667|gb|EGG70974.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis VCU028] Length = 255 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 114/243 (46%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E++ + G H V A+ + KI K V+TVP +D + Sbjct: 8 EDIVIVGRHAVKEAIISGHAINKILIQDGIKKQQINDILKNAKSQKLIVQTVPKSKLDFL 67 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D + +++LD + DPHN+G+ILR+A A Sbjct: 68 A--NAPHQGVAALVAPYEYANFDEFLQKQKKKDSYSTVIILDGLEDPHNLGSILRTADAS 125 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D +I KR S + + +AK+++GA++H+P IR++NL+ + ++ GF G +++ Sbjct: 126 GVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWIAGTEANNA 185 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + +++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 186 TDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVY 245 Query: 278 NHF 280 Sbjct: 246 RKR 248 >gi|257417470|ref|ZP_05594464.1| RNA methyltransferase TrmH [Enterococcus faecalis AR01/DG] gi|257159298|gb|EEU89258.1| RNA methyltransferase TrmH [Enterococcus faecalis ARO1/DG] Length = 285 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 72/284 (25%), Positives = 114/284 (40%), Gaps = 12/284 (4%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65 K+EK K R + R ++ + E F++G H AL Sbjct: 2 KNEKSRPFKKGKKRPERSDKRSKERNPRPAIAGADGTSEELADNFVFGFHATVEALQQGR 61 Query: 66 -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 K+F + A PVK VP +D + VHQG+ L Sbjct: 62 GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTMSDH-GVHQGMVLAITAYQYL 120 Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 TL+ + ++LD + DPHN G+ILR+A A DGII K + + + Sbjct: 121 TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K+++GA+EHIP R++NL ++ + F G IALI+G EG Sbjct: 181 KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYRRWNT-QGAIALIIGNEG 239 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +G+ + + + M G +++LN AA + +Y Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGRN 283 >gi|225387934|ref|ZP_03757698.1| hypothetical protein CLOSTASPAR_01706 [Clostridium asparagiforme DSM 15981] gi|225045977|gb|EEG56223.1| hypothetical protein CLOSTASPAR_01706 [Clostridium asparagiforme DSM 15981] Length = 246 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A K+F L ++ R H V V + +D+I Sbjct: 8 IEGRNAVLEAYRAGKTIDKLFVLDGCQDGPVRTIVREAKKHDTIVNFVAKERLDQISETG 67 Query: 109 AVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A A + D L++LD + DPHN+GAI+R+A G+ Sbjct: 68 KHQGVIAYAAAYEYAEVEDLLKLAEEKGEPPFLILLDGIEDPHNLGAIIRTANLAGAHGV 127 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I KR + +A +AK+++GAL + P +++NLT ++ + G + + + + Sbjct: 128 IIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLTATMEDLKKKGMWFVCA-DMGGELMYR 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G EG+G+ +E +A + M G I +LN S AA V Y Sbjct: 187 LNLKGPIGLVIGNEGEGVGKLVKEHCDMVASIPMKGDIDSLNASVAAGVLAYEIVRQR 244 >gi|222151576|ref|YP_002560732.1| rRNA methyltransferase homolog [Macrococcus caseolyticus JCSC5402] gi|222120701|dbj|BAH18036.1| rRNA methyltransferase homolog [Macrococcus caseolyticus JCSC5402] Length = 246 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 51/278 (18%), Positives = 105/278 (37%), Gaps = 32/278 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I +++KI + H + + + + G H V A Sbjct: 1 MEIIESIQNQKIKQIAKLH-------------------NRKDRKKMQQFIIEGEHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +N+ L + L +A + + + +K+ EA A+ Sbjct: 42 VNSNIDIEMILTVNPDRLT----EAMVAGSKQQYEITFKVAEKLSQTEAPQGIYAVCNMK 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 ++ LD + DP N+G I+R+A A D +I K + + +++ Sbjct: 98 DGKDAE-----LNRVIYLDRIQDPGNVGTIIRTADAAGLDAVIIAKGTVDIYNDKVLRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ HIP I + + + G S + + ++ I +D ++LG EG+G+ Sbjct: 153 QGSVFHIPVIEMDFD----EVSSKFNGTIYGTSLEEARDYKEVIPSDNFMIVLGNEGQGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+ ++ + G ++LNV+ A + +Y Sbjct: 209 NPEILSATDENLYIPIYGRAESLNVAVCAGILMYHFVK 246 >gi|223982632|ref|ZP_03632866.1| hypothetical protein HOLDEFILI_00140 [Holdemania filiformis DSM 12042] gi|223965412|gb|EEF69690.1| hypothetical protein HOLDEFILI_00140 [Holdemania filiformis DSM 12042] Length = 261 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 117/237 (49%), Gaps = 10/237 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG + V L + +K+ + L + A P + V + +DK + Sbjct: 23 WIYGKNAVMQILKS-KKKVEKALVAEGAKFPEAETLLKNRRIPTQRVSRKELDKCC-MDT 80 Query: 110 VHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+AL + +++ + +++LD + DPHN+GA+LR+ A DG+I Sbjct: 81 HHQGIALYCEDYKTVSVEEMLERIPSGKLGTIVILDELEDPHNLGAVLRTCDAVGADGVI 140 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K S S ++ +AK ++GA+E +P ++NLT L+++ G+ G + + Q Sbjct: 141 LRKNRSVSLNSTVAKVSTGAIETVPVAMVANLTQTLKQLKEKGYWVYGTDMRNAQDYRQP 200 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQN 278 + +AL++G+EGKG+ +E M L M G I +LN S A AV LY + Sbjct: 201 AFDTPVALVIGSEGKGISRLVKEECDVMLTLPMEGTISSLNASVACAVLLYQIHAKR 257 >gi|300934670|ref|ZP_07149926.1| putative rRNA methylase [Corynebacterium resistens DSM 45100] Length = 316 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 61/277 (22%), Positives = 114/277 (41%), Gaps = 15/277 (5%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 + HR K+ + +RH + G + V L+ L Sbjct: 39 KAEDRTYHPAHRRKKEAERRASGAHNRHERADAVELVVGRNPVVECLHAN-VPATALYVA 97 Query: 75 KNALARLDWDAN----LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD--- 127 + V V Q +D++ G +HQG+ L+ P ++ Sbjct: 98 EGTKNDERLSEAVHTCADRGISVLEVSRQELDRMTG-NGMHQGIGLQIPPYKYTEVEDLI 156 Query: 128 ----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 +++ LD++ DP N+GA++RS AF G++ +R S S +AV ++++G Sbjct: 157 ESTANAATPGMIVALDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGT 216 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 +P + +N+ L++ G+Q +GL + L+ + +++G+EGKGL Sbjct: 217 AARLPVAKATNMVRTLKQFQQAGYQVVGLDAGGDHTLDTYDGTTPVVIVVGSEGKGLSRL 276 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ET ++ + M +++LN S AA V L Sbjct: 277 VSETCDTIMSVPMAKWVESLNASVAAGVVLSEFARQR 313 >gi|319794335|ref|YP_004155975.1| RNA methyltransferase, trmh family, group 3 [Variovorax paradoxus EPS] gi|315596798|gb|ADU37864.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus EPS] Length = 248 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 106/241 (43%), Gaps = 10/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G H V + + + ++L ++A + + I K+ G Sbjct: 6 VIFGFHAVGVRIKTAPKSVLEVLFDASRRDARMKQFIARAQEAGVRLVEADSLRIAKLAG 65 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSC 159 A +LD + LL+VLD V DPHN+GA LR A Sbjct: 66 SHGHQGVAARVEPTAQIHSLDELLEGLEEAGTVPLLLVLDGVTDPHNLGACLRVADGAGA 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K ++ +A +AK ASGA E +PY ++NL + ++ +G S D+ Sbjct: 126 HAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTMNELKERSIWCVGTSDDAPGT 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + Q +AL+LGAEG G+R T++T + + M G +++LNVS A+ V LY Sbjct: 186 IYQSDLKRPLALVLGAEGDGMRQLTRKTCDELVSIPMAGAVESLNVSVASGVCLYEAMRQ 245 Query: 280 F 280 Sbjct: 246 R 246 >gi|268608876|ref|ZP_06142603.1| RNA methyltransferase, TrmH family [Ruminococcus flavefaciens FD-1] Length = 259 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 89/257 (34%), Gaps = 6/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K Q + + Q L G+ AL + S + L+ T+NA ++ Sbjct: 7 SKDNPTVKLYQKLSSSKKERLQYGLFVLEGLRITEDALRDGS--VSHLILTENAYSKTAD 64 Query: 84 DANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + V + + ++I ++ A+ P +++ + Sbjct: 65 ELLQADLRDTKVLVISNELGNRIASTDSTQGVFAICRIPSGRTPAFCDDGRYVVLYG--L 122 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+A A +G+I + V+ + + Sbjct: 123 QDPGNVGMIIRTADALGINGVILSGSCDLYSPKVIRSTMGSVFRMAVSVINDTDALFALL 182 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + + + + + A+ +G EG GL T + M G I Sbjct: 183 EENGVESSAAVIDKDAVKVTECSFTGRQAVFIGNEGNGLPADVAHRCTRRVTIPMSGNIN 242 Query: 262 ALNVSNAAAVALYITQN 278 +LN + AA + ++ + Sbjct: 243 SLNAAMAAGILMWELKK 259 >gi|254456252|ref|ZP_05069681.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Pelagibacter sp. HTCC7211] gi|207083254|gb|EDZ60680.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Pelagibacter sp. HTCC7211] Length = 247 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 120/239 (50%), Gaps = 7/239 (2%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTI 101 + F+ G H V AL NP+RK+ ++ T++A + + + N+ V + + Sbjct: 2 NKSSFFIAGQHAVIEALRNPNRKVLRVFLTEDAKKNIHKKNSRKNVLEDVKVYFKSKKEL 61 Query: 102 DKIVGKEA-VHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 DK KE +H G E L P L + + LD V DP NIG+++RSA +F Sbjct: 62 DKYTSKEQLMHNGYIAEVEHLEQPDLKEFIKEKKDCTFVCLDEVTDPRNIGSLIRSAASF 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I +R+ PS+S ++ KSASG +EH+ ++SN+ L+ + F G + + Sbjct: 122 KIDGLIVKERHFPSDSKLMYKSASGCMEHLNIFKVSNINSTLKNLREKNFWVYGFDARGE 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K K L+ G+EG G++ T + A + + I++LN+SN+AA+ + Sbjct: 182 KNFTDVKWEGKNVLLFGSEGFGMKEHTGKYADFFVKIDINKDIESLNISNSAAIVFHHL 240 >gi|308048246|ref|YP_003911812.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Ferrimonas balearica DSM 9799] gi|307630436|gb|ADN74738.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Ferrimonas balearica DSM 9799] Length = 245 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 108/241 (44%), Gaps = 10/241 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIV 105 ++G+H V A + ++ +L K RL A L + + +D Sbjct: 4 EMVFGLHAVEALMQRQPERVMELWVMKGRDDERLTRIAELAQQFGVRPQLAARKVLDDKA 63 Query: 106 GKEAVHQGLALETAP------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ P L ++ L+VLD V DPHN+GA LRSA A Sbjct: 64 -ESTQHQGVVARCKPEPVKGEHELDQLLDGVDTPFLLVLDGVTDPHNLGACLRSADAAGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I K S S ++ K A GA E IP +++NL L+ + G +G + ++ Sbjct: 123 HGVIVPKDRSASLGPIVRKVAVGAAESIPLFQVTNLARTLRSLQERGIWIVGAAGEATHT 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + Q +A+ +GAEGKGLR T+E + + M G + +LNVS A + L+ Sbjct: 183 VYQSKLTGPLAIAMGAEGKGLRRLTREHCDDLISIPMAGAVSSLNVSVATGICLFEAVRQ 242 Query: 280 F 280 Sbjct: 243 R 243 >gi|296116988|ref|ZP_06835589.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter hansenii ATCC 23769] gi|295976470|gb|EFG83247.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter hansenii ATCC 23769] Length = 306 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 103/242 (42%), Positives = 138/242 (57%), Gaps = 4/242 (1%) Query: 41 RHTSQ---PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 R ++ +LYG H V AAL+NP R + QLL T A A L+ P + V Sbjct: 62 RGRAEVAPRGTCWLYGTHAVMAALSNPHRHLRQLLTTAEAQAALEERMGRALPIQPQRVD 121 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 ID I G++AVHQG+AL L +P L D V +++LD V DP NIGAILRSA A Sbjct: 122 RARIDSICGRDAVHQGIALLADLLDTPALEDIVERPGPVLLLDQVTDPRNIGAILRSAAA 181 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F +I R +P E+ LAK+ASGALE +P +R+ NL+ + + S G T+GL + Sbjct: 182 FGAAAVIVQDRNAPEETGALAKAASGALEVVPLVRVVNLSRTIDALKSHGMWTVGLDAGG 241 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + ++AL+LGAEG GLR T+E +A L M G +++LNVSNAAAVALY Sbjct: 242 GILDGASFRQRRVALVLGAEGAGLRRLTREHCDEIAGLAMSGDMESLNVSNAAAVALYEM 301 Query: 277 QN 278 Sbjct: 302 SR 303 >gi|56417006|ref|YP_154080.1| hypothetical protein AM915 [Anaplasma marginale str. St. Maries] gi|222475374|ref|YP_002563791.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str. Florida] gi|56388238|gb|AAV86825.1| hypothetical protein AM915 [Anaplasma marginale str. St. Maries] gi|222419512|gb|ACM49535.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str. Florida] Length = 261 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 80/253 (31%), Positives = 129/253 (50%), Gaps = 13/253 (5%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP 98 R + +++ G H AAL NP+R +L T L + A + K V Sbjct: 3 RTRNHGGCMWICGRHVCIAALQNPNRVCRDMLVTGEFLKKYPEVARMAQSKGVYPKRVAA 62 Query: 99 QTIDKIVGKEAV-HQGLALETAPLLSPTLDAVRNSQLL----------MVLDHVNDPHNI 147 + I KI+G + HQG+AL L +R ++ ++LD V D +N+ Sbjct: 63 EKISKILGHGGMAHQGIALMVDELSGRDGSKLRVEDIVSANPSEASTVVILDRVTDINNV 122 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+RSA F D +I + +SPSES + K++SGA + +P +++ NL ++ + G+ Sbjct: 123 GAIVRSAACFDADAVILPEHHSPSESCTITKASSGAADIVPVVQVGNLVKTMEYLKQNGY 182 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G+ + K L + ++ A+ILG+EGKG+R T+E + + M I +LNVSN Sbjct: 183 WCYGMDAGGDKALHEISFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARIDSLNVSN 242 Query: 268 AAAVALYITQNHF 280 AAA+ALY + Sbjct: 243 AAAIALYSSYLQL 255 >gi|239997218|ref|ZP_04717742.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii ATCC 27126] Length = 246 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 111/244 (45%), Gaps = 8/244 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102 + +LYG+H + + L ++ ++L K RL N V+ + +D Sbjct: 2 AQQEWLYGLHAMQSVLEKEPERVMEVLVLKGRNDERLTNIVNQARRFGISVQFCQRKALD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAF 157 V E +A + D + L++VLD V DPHN+GA LR+A Sbjct: 62 DKVSGEQHQGVVARAKPARVLDEADLDKILESEAQPLILVLDGVTDPHNLGACLRTADGA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 ++ K S S + + K A GA E +P I+I+NL L+ + G +G + ++ Sbjct: 122 GVHAVVVPKDKSASLNGTVRKVACGAAEVVPLIQITNLARTLKHLQDKGLWIVGTAGETD 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K L AL++GAEGKG+R T+ET + L M G + +LNVS A V LY Sbjct: 182 KTLYDVDLKGPTALVMGAEGKGMRRLTKETCDELVKLPMAGSVTSLNVSVATGVCLYEIV 241 Query: 278 NHFA 281 + Sbjct: 242 RQRS 245 >gi|293390726|ref|ZP_06635060.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951260|gb|EFE01379.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter actinomycetemcomitans D7S-1] Length = 245 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 113/242 (46%), Gaps = 11/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A + + ++ ++ K RL N V+ + QT+DK Sbjct: 5 IYGIHAVKAFVTHYPERLIEVWVLKGRDDQRLQPLINEIQRLGISVQFLNRQTLDKKAEG 64 Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ L + + LL+VLD V DPHN+GA LR+A A + Sbjct: 65 E-VHQGIIARVHSLPELNEHDLDRLLEQQKAPLLLVLDGVTDPHNLGACLRTADAAGVNA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220 +I K S ++ K A GA E++P IR++NL L+++ + ++ Sbjct: 124 VIVPKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRELQKRHNVWVVGTAGETTETL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++G+EG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQTKLTGALALVMGSEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVATGVCLFEIVRQR 243 Query: 281 AK 282 K Sbjct: 244 LK 245 >gi|290959418|ref|YP_003490600.1| RNA methyltransferase [Streptomyces scabiei 87.22] gi|260648944|emb|CBG72058.1| putative RNA methyltransferase [Streptomyces scabiei 87.22] Length = 313 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 61/280 (21%), Positives = 102/280 (36%), Gaps = 14/280 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQ 70 ++ H A N + + + + R + + G + V AL S Q Sbjct: 36 EMRKKHKANRIANAKAKQAARRPAPRGRGGKGTSEMVV-GRNPVVEALREGVPASTLYVQ 94 Query: 71 LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128 + R + P +D++ HQGL L+ P + Sbjct: 95 QFIDNDERVREALQLAAERGGINLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDL 153 Query: 129 ------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L++ LD V DP N+GA++RS AF G++ +R + +A K+++G Sbjct: 154 ANAAYDEGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVLVPERRAAGMTAGAWKTSAG 213 Query: 183 ALEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 P R +N + + + E E + +++G+EGKGL Sbjct: 214 TAARTPVARCTNLTRALEAYKKAGVVVVGLAADGESEIGELEALGGPVVIVVGSEGKGLS 273 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + MPG ++LN AA V LY A Sbjct: 274 RLVGETCDYRVRIPMPGGAESLNAGVAAGVVLYEAARRRA 313 >gi|121594611|ref|YP_986507.1| RNA methyltransferase [Acidovorax sp. JS42] gi|120606691|gb|ABM42431.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Acidovorax sp. JS42] Length = 248 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 110/243 (45%), Gaps = 11/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V L + I ++ ++A R + + + K+ G Sbjct: 6 VLFGFHAVGVRLKTAPQSIIEIYYEPTRRDARMRQFLERAREAGTRLIEADGLRLAKLAG 65 Query: 107 KEAVHQGLALETAPLLSPTLD--------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A A TLD + LL+VLD V DPHN+GA LR A Sbjct: 66 SHGHQGVAARVEAVAQVRTLDELLDELEARGVKNPLLLVLDGVTDPHNLGACLRVADGAG 125 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG S D+ K Sbjct: 126 AHAVIAPKDHAVGINATVAKVASGAAETVPYFMVTNLARTLNELKERNIWVIGTSGDADK 185 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL+LGAEG G+R T++T + + M G +++LNVS A+AV LY Sbjct: 186 TLYQVDLKGPVALVLGAEGPGMRQLTRKTCDELVGIPMQGAVESLNVSVASAVCLYEALR 245 Query: 279 HFA 281 A Sbjct: 246 QRA 248 >gi|68535387|ref|YP_250092.1| putative rRNA methylase [Corynebacterium jeikeium K411] gi|68262986|emb|CAI36474.1| putative rRNA methylase [Corynebacterium jeikeium K411] Length = 318 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 61/271 (22%), Positives = 114/271 (42%), Gaps = 19/271 (7%) Query: 27 HRDYKKMQSFNQKSRH------TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 H YK+ Q+ +++ + + G + V L+ L + Sbjct: 46 HAAYKRKQAAKRRASGAHDRFAKDDNQVELVVGRNPVIECLHA-KVPATALYVAEGTKND 104 Query: 81 LDWDAN----LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------V 129 V V +D++ G +HQG+ L+ P ++ Sbjct: 105 ERLAEAVHTCADRGISVLEVSRAELDRMTG-NGMHQGIGLQIPPYQYTQVEDLIQQAASA 163 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 L++ LD++ DP N+GA++RS AF G+I +R S S +AV ++++G +P Sbjct: 164 PQPGLVVALDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLPV 223 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + +N+ +L++ G+Q +GL + L+ +++G+EGKGL ET Sbjct: 224 AKATNMVRSLKQFQQAGYQVVGLDAGGDHTLDTYDGTTPTVIVVGSEGKGLSRLVSETCD 283 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + M +++LN S AA V L Sbjct: 284 TIMSIPMAKWVESLNASVAAGVVLSEFARQR 314 >gi|307710737|ref|ZP_07647165.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321] gi|307617343|gb|EFN96515.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321] Length = 246 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 56/276 (20%), Positives = 104/276 (37%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L FP + I + QG+ Sbjct: 40 VQAGVT-IEKIFALENYRDQLA-------SFPQTVWVSEDILLDLADSQTPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADFSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+S+ + + S + + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRMSSQALLKETKEAAIPVLATTLSKDSVDYRELPPIENFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPLMVESADQLVHISMKGQAESLNVAVAAGILIFHL 245 >gi|313891493|ref|ZP_07825106.1| RNA methyltransferase, TrmH family [Dialister microaerophilus UPII 345-E] gi|313120070|gb|EFR43249.1| RNA methyltransferase, TrmH family [Dialister microaerophilus UPII 345-E] Length = 261 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 51/278 (18%), Positives = 112/278 (40%), Gaps = 24/278 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ N++ K + K ++ + + G+ V A Sbjct: 1 MEIITSL------------------NNKWIKTVSQLRLK-KYRDKNNLFIMEGIRLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHP----FPVKTVPPQTIDKIVGKEAVHQGLAL 116 + ++ ++N + + + + + V + ++K+ G + +A+ Sbjct: 42 VKLKYSEVVC-FISENVTEKERIQNLIKNGNLLKWKILFVSEKVMNKLSGTKHTQGIVAI 100 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 ++ +N++ + LD V DP N+G I+R+A A D +I +K + S Sbjct: 101 VKKRCINLGTLKYKNNERYVFLDEVQDPGNVGTIIRTAAATGMDAVILSKGCADPYSEKA 160 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 +S+ G++ IP + + + ++ + +G S +P Q + I G E Sbjct: 161 IRSSMGSIFRIPVVTDVSTDELIKWKNETNIFFVGTSLQDAEPYTQISLSGCCMFIFGNE 220 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G G+ K + ++ + +++LNVS A AV L+ Sbjct: 221 GNGVSQKILNISDKKIYIPLKSNVESLNVSIATAVILF 258 >gi|293115791|ref|ZP_05793026.2| RNA methyltransferase, TrmH family [Butyrivibrio crossotus DSM 2876] gi|292808225|gb|EFF67430.1| RNA methyltransferase, TrmH family [Butyrivibrio crossotus DSM 2876] Length = 246 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 96/248 (38%), Gaps = 9/248 (3%) Query: 35 SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94 + +KS + + G+ P +I ++ A+++ + + Sbjct: 2 NLIKKSGVRKERGLFVIEGIRMFVEI---PKDRIVKIYASESFAYDNKEMLC---DYRYE 55 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V + QG+ L L +L+VL+++ DP N+G I+R Sbjct: 56 IVADNVFKMMSD-TKTPQGILAVVKMLEYDIEDLFKKDKVPMLVVLENIQDPGNLGTIIR 114 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A GII + + + +S G+L +P++ ++ A+ + + Sbjct: 115 TAEGAGATGIIMSDKTVDIYNPKTIRSTMGSLFRMPFVYSEDVVAAIHSLKQQNIKVFAA 174 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +E +A+++G EG GL + + A + M G +++LN + + AV Sbjct: 175 HLEGRNYYYEEDMKVPMAVLIGNEGNGLTEELSKEADVRIKIPMEGKLESLNAAVSTAVI 234 Query: 273 LYITQNHF 280 LY Sbjct: 235 LYEAMRQR 242 >gi|161870027|ref|YP_001599196.1| RNA methyltransferase [Neisseria meningitidis 053442] gi|161595580|gb|ABX73240.1| RNA methyltransferase [Neisseria meningitidis 053442] Length = 261 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 53/282 (18%), Positives = 92/282 (32%), Gaps = 24/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + + + + Q L GVH + Sbjct: 1 MKHISSANNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L + R + + + + V +V + KI + Sbjct: 43 LQSGGRPVGVYIPEAKMPSEEVRKLTAVLPEDGVFSVSDGILKKISS-LTCADDVLALID 101 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + L A + +VLD V DP N+G +LRSA A ++ K + + S + ++ Sbjct: 102 IPDAGALPAGGDC---VVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRA 158 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 GA ++L L F T E + A + G EG G Sbjct: 159 GMGAHFLSEIYPQADLEIWLASYKGRVFATALREEKQAVLY-NEDLREPTAWVFGNEGAG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + A + M ++LNV+ AA + L+ + Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRS 259 >gi|329122151|ref|ZP_08250759.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM 19965] gi|327466958|gb|EGF12474.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM 19965] Length = 271 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 51/278 (18%), Positives = 113/278 (40%), Gaps = 24/278 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ N++ K + K ++ + + G+ V A Sbjct: 11 MEIITSL------------------NNKWIKTVSQLRLK-KYRDKNNLFIMEGIRLVEEA 51 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHP----FPVKTVPPQTIDKIVGKEAVHQGLAL 116 + ++ ++N + + + + + V + ++K+ G + +A+ Sbjct: 52 VKLKYSEVVC-FISENVTEKERIQNLIKNGNLLKWKILFVSEKVMNKLSGTKHTQGIVAI 110 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 ++ +N++ + LD V DP N+G I+R+A A D +I +K + S Sbjct: 111 VKKRCINLGTLKYKNNERYVFLDEVQDPGNVGTIIRTAAATGMDAVILSKGCADPYSEKA 170 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 +S+ G++ IP + ++ + ++ + +G S +P Q + I G E Sbjct: 171 IRSSMGSIFRIPVVTDVSIDELIKWKNETNIFFVGTSLQDAEPYTQISLSGCCMFIFGNE 230 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 G G+ K + ++ + +++LNVS A AV L+ Sbjct: 231 GNGISQKILNISDKKIYIPLKSNVESLNVSIATAVILF 268 >gi|300869384|ref|ZP_07113971.1| tRNA/rRNA methyltransferase [Oscillatoria sp. PCC 6506] gi|300332611|emb|CBN59169.1| tRNA/rRNA methyltransferase [Oscillatoria sp. PCC 6506] Length = 362 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 17/252 (6%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTI 101 E +YG H+V AAL R + ++ T + + + V V + + Sbjct: 102 EETELIYGRHSVQAALE-KERTLNRIWITPQLRYDPRFHSLVNQAKANGSIVDEVDFRRL 160 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSA 154 D+I A+HQG+A + + L +L+V + +NDPHN+GAI+R+A Sbjct: 161 DQITD-RAIHQGIAAQVSAYDYKELSELIAHAKSASEQPVLVVAEGLNDPHNLGAIIRTA 219 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A G++ +R + +A + K A+GALE+ P R+ NL+ AL+++ + GF G ++ Sbjct: 220 EALGSQGMVIPQRRAVGITATVRKVAAGALENFPVARVVNLSRALEELKAAGFWIYGTAA 279 Query: 215 DSKKPLEQEIKND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 K + + L++G+EG GL Q + + + G +LNVS A Sbjct: 280 KEGKAIHTVQFTGKLARPVVLVVGSEGDGLSLLIQRCCDELVSIPLRGNTPSLNVSVATG 339 Query: 271 VALYITQNHFAK 282 +ALY + Sbjct: 340 MALYEIYRQRGQ 351 >gi|218779780|ref|YP_002431098.1| RNA methyltransferase, TrmH family, group 3 [Desulfatibacillum alkenivorans AK-01] gi|218761164|gb|ACL03630.1| RNA methyltransferase, TrmH family, group 3 [Desulfatibacillum alkenivorans AK-01] Length = 249 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 108/243 (44%), Gaps = 12/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDK 103 + LYG+H V AL R+ + +++ VKT Sbjct: 2 KTELLYGMHPVREALLAGKRQFQAVYVSESRTGEGKEDILSLARERGIEVKTPDQSFFK- 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 G++ QG+A + L+ +++D +NDP N GA++R+A+ Sbjct: 61 --GQDRGGQGVAARVSLFKPIALELLVKKAGGEQPLFFLLMDEINDPQNCGALMRTALCA 118 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +G+I + S S ++K+++GALEH+P R+ NL ++Q + G GL + + Sbjct: 119 GVNGVIMPDKRSSPLSPAVSKASAGALEHMPVARVVNLVRSMQYLKDQGVWFFGLDARAS 178 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + A+++G EGKGLRP ++ + + G + +LN S A A+++Y Sbjct: 179 GTVWEADLTGPAAVVVGNEGKGLRPLVRKECDQLVSIPQAGPLGSLNASVAGALSMYEVM 238 Query: 278 NHF 280 Sbjct: 239 RQR 241 >gi|302541293|ref|ZP_07293635.1| putative 23S rRNA methyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302458911|gb|EFL22004.1| putative 23S rRNA methyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 299 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 58/294 (19%), Positives = 111/294 (37%), Gaps = 18/294 (6%) Query: 1 MNLISKKKSEKIFSLKDSHYAKL------RRNHRDYKKMQSFNQKSRHTSQPENLFLYGV 54 M S +++ ++ A + + ++S + + G Sbjct: 1 MPTRSAPRNDCPQPCDNTEGAPMATPELTSLRSPRVTAARRLAKRS-FRGKERRFLVEGP 59 Query: 55 HTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 V A+ + + ++ AT A AR +A PV T I ++ Sbjct: 60 QAVREAIAH----LVEVYATPEAAARHTGIVEAARASRIPVLTASDDVIAEMSDTVTPQG 115 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 + L +L+ VL +V DP N G +LR A A D ++ T Sbjct: 116 IVGLCRFLDSPFEEILRARPRLVAVLANVRDPGNAGTVLRCADAAGADAVVFTDASVDPY 175 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDK 228 + +++ G+L H+P + +A+ + + G + + ++ L++E + Sbjct: 176 NPKAVRASVGSLFHLPVATGVPVEEAVDGLRTAGARVLAADGAGERDLDEELDDGVLGAP 235 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HFA 281 A I G E GL T+ A + + + G ++LN++ AAAV LY + A Sbjct: 236 TAWIFGNEAWGLPEATRALADEVVRVPIHGRAESLNLATAAAVCLYASARAQRA 289 >gi|269124973|ref|YP_003298343.1| RNA methyltransferase, TrmH family, group 3 [Thermomonospora curvata DSM 43183] gi|268309931|gb|ACY96305.1| RNA methyltransferase, TrmH family, group 3 [Thermomonospora curvata DSM 43183] Length = 306 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 70/255 (27%), Positives = 113/255 (44%), Gaps = 9/255 (3%) Query: 35 SFNQKSRHTSQPEN---LFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHP 90 S + + + G + V AL K +++ + R Sbjct: 52 SPARPAGTRRANGPDAPELVVGRNPVVEALRAGVPGKALYVVSDTDERIREAVKIAGDRG 111 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNI 147 P+ +D++ AVHQG+AL+ P + L++ D + DP N+ Sbjct: 112 IPLLQAGRSELDRLTD-GAVHQGIALQVRPYRYADPEELLQRGTPPLIVACDGITDPRNL 170 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+RSA AF +G++ +R S +A KS++G L ++P + +NLT L+ G Sbjct: 171 GAIVRSAAAFGANGVVIPERRSAGVTAGTWKSSAGTLANLPVAQTTNLTRQLKAYQQAGC 230 Query: 208 QTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 GL S + EI + + L++G+EGKGL ET +A + MPG ++LN Sbjct: 231 FVAGLDSRGAITVADLEIADGPLVLVVGSEGKGLSRLVAETCDMLATIPMPGRAESLNAG 290 Query: 267 NAAAVALYITQNHFA 281 AA +ALY A Sbjct: 291 VAAGIALYEIARRRA 305 >gi|116053085|ref|YP_793404.1| TrmH family RNA methyltransferase , group 3 [Pseudomonas aeruginosa UCBPP-PA14] gi|115588306|gb|ABJ14321.1| putative RNA methyltransferase, TrmH family, group 3 [Pseudomonas aeruginosa UCBPP-PA14] Length = 248 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 115/241 (47%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YGVH V A L + +++ QL + ++ + PV + +D+ Sbjct: 7 VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64 Query: 108 EAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 E VHQG+ E +L L+ LL+ LD V DPHN+GA LR+A A Sbjct: 65 EGVHQGVVAEVSPSQVWGENMLEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQ 124 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S + +A + K A GA E IP + ++NL L+K+ G +G + ++ K L Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q L++GAEGKG+R T+E +A L M G + +LNVS A V L+ Sbjct: 185 YQLDLTGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFKILRQR 244 Query: 281 A 281 Sbjct: 245 T 245 >gi|171058586|ref|YP_001790935.1| RNA methyltransferase [Leptothrix cholodnii SP-6] gi|170776031|gb|ACB34170.1| RNA methyltransferase, TrmH family, group 3 [Leptothrix cholodnii SP-6] Length = 244 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 114/239 (47%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V+ + + ++ ++A R + + + ++ G Sbjct: 6 LLFGFHAVTVRVKTAPASVLEVHVDPARRDARMRQFVARVEAAGIRLIETDDKRLGQMAG 65 Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ L LDAV L++VLD V DPHN+GA LR A Sbjct: 66 -NTRHQGVVARVNVLAPIHSLDDLLDAVEGPPLVLVLDGVTDPHNLGACLRVADGAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K ++ +A +AK ASGA E +PY ++NL L ++ + IG S D+ + + Sbjct: 125 VIAPKDHAVGVNATVAKVASGAAETVPYFMVTNLARTLNELKERDIRVIGTSEDATQSIY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A++LGAEG G+R T++T + H+ M G +++LNVS A+AV LY Sbjct: 185 DIDLSGPVAIVLGAEGPGMRQLTRKTCDELVHIPMRGAVESLNVSVASAVCLYEALRQR 243 >gi|163732185|ref|ZP_02139631.1| RNA methyltransferase, TrmH family, putative [Roseobacter litoralis Och 149] gi|161394483|gb|EDQ18806.1| RNA methyltransferase, TrmH family, putative [Roseobacter litoralis Och 149] Length = 257 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 105/253 (41%), Positives = 149/253 (58%), Gaps = 7/253 (2%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 K ++ + T E ++L+G+H V AL N +R+ QL+ T NA A+L DA Sbjct: 5 KWVVRKEQDKKTENRETIWLFGLHAVRDALENAAREKLQLIVTLNAQAKLA-DAIETSGI 63 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIG 148 + V P+ + + +VHQG ALE PL +L+ V +M+LD V DPHN+G Sbjct: 64 APEVVDPRKFNAPLDPGSVHQGAALEVKPLNWGSLEDVCVGSEHPRVMLLDRVTDPHNVG 123 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AILRSA F +I T+ +S E+ LAKSASGALE PY+R+ NL D ++ + G+ Sbjct: 124 AILRSAEVFGASAVIGTRHHSAPETGALAKSASGALERQPYLRVRNLADTIRALQGMGYI 183 Query: 209 TIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +GL +++ LEQ I ++ IAL+LGAEG GLR KT+ET S+ + G +LNV Sbjct: 184 VLGLDGEARDTLEQAIEGKRDRPIALVLGAEGPGLREKTKETVDSLVRIDAAGQFGSLNV 243 Query: 266 SNAAAVALYITQN 278 SNAAA+ALY T+ Sbjct: 244 SNAAAIALYATRR 256 >gi|298245607|ref|ZP_06969413.1| RNA methyltransferase, TrmH family, group 3 [Ktedonobacter racemifer DSM 44963] gi|297553088|gb|EFH86953.1| RNA methyltransferase, TrmH family, group 3 [Ktedonobacter racemifer DSM 44963] Length = 249 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTID 102 + +++G + + L + RK+ ++L + + PV+TVP +D Sbjct: 2 SEYIWGRNPIMETLQS-VRKVKRILLAEGSKREGGTLNTIIQEAQKRQIPVETVPRARLD 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ K AVHQG A + D L++LD + D +N+G++LR+A Sbjct: 61 QMS-KGAVHQGCVAVVAEREYASTDDILARAAERNEPPFLLLLDSIQDVNNLGSLLRTAE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G+I + + +A + K+++GA EHI R +NLT + + +GL+ + Sbjct: 120 AAGVHGVIIPEHRAAEVNATVVKTSAGATEHIMIARETNLTRTIDYLKQQNIWIVGLAGE 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 Q +A+++G EGKG+ +E + L M G I +LN + A ++ LY Sbjct: 180 GDTLYTQANLTGALAVVVGNEGKGMGRLVREHCDVLIKLPMHGYINSLNAAVAGSITLYE 239 Query: 276 TQNHFA 281 + Sbjct: 240 ALRQRS 245 >gi|222110801|ref|YP_002553065.1| TrmH family RNA methyltransferase [Acidovorax ebreus TPSY] gi|221730245|gb|ACM33065.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax ebreus TPSY] Length = 248 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 110/243 (45%), Gaps = 11/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V L + I ++ ++A R + + + K+ G Sbjct: 6 VLFGFHAVGVRLKTAPQSIIEIYYEPTRRDARMRQFLERAREAGARLIEADGLRLAKLAG 65 Query: 107 KEAVHQGLALETAPLLSPTLD--------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A A TLD + LL+VLD V DPHN+GA LR A Sbjct: 66 SHGHQGVAARVEAVAQVRTLDELLDELEARGVKNPLLLVLDGVTDPHNLGACLRVADGAG 125 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG S D+ K Sbjct: 126 AHAVIAPKDHAVGINATVAKVASGAAETVPYFMVTNLARTLNELKERNIWVIGTSGDADK 185 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L Q +AL+LGAEG G+R T++T + + M G +++LNVS A+AV LY Sbjct: 186 TLYQVDLKGPVALVLGAEGPGMRQLTRKTCDELVGIPMQGAVESLNVSVASAVCLYEALR 245 Query: 279 HFA 281 A Sbjct: 246 QRA 248 >gi|158521920|ref|YP_001529790.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3] gi|158510746|gb|ABW67713.1| RNA methyltransferase, TrmH family, group 3 [Desulfococcus oleovorans Hxd3] Length = 256 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 112/250 (44%), Gaps = 13/250 (5%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTV 96 + + E LYG+H V AA+ RK+ L R L H PV + Sbjct: 2 KRPDRSET--LYGIHPVMAAITAGRRKVDTLFIASGRETRQPHQQALQAAEQHNIPVNEI 59 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAI 150 P + ++++ G VHQG+A + L ++ ++V D + DPHN+GA+ Sbjct: 60 PARDLEQMTG-GKVHQGIAARVSVYPFVPLADLLAAVPSTDTPFILVADGLTDPHNLGAL 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 R+A+ G+I K + S + K+++GALE +P R +N+ L + G Sbjct: 119 ARTALCAGVHGLIIPKDNAASPTPAAVKASAGALEFLPVARETNIARVLDALKDAGLWIA 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 GL ++ + +AL++G EG+G+R + + + ++ +LN S A A Sbjct: 179 GLDGRGEQTIYDSDLTGPLALVVGDEGRGIRRLVGQKCDFILSIPQTDMVHSLNASVAGA 238 Query: 271 VALYITQNHF 280 VA+Y Sbjct: 239 VAMYEAFRQR 248 >gi|317495868|ref|ZP_07954231.1| RNA methyltransferase [Gemella moribillum M424] gi|316914045|gb|EFV35528.1| RNA methyltransferase [Gemella moribillum M424] Length = 270 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 72/269 (26%), Positives = 131/269 (48%), Gaps = 15/269 (5%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPE----NLFLYGVHTVSAALNNPSRKIFQLL--ATKN 76 +++N++ YK+++S N++ ++ E + G + + A+ + L + Sbjct: 1 MKKNNKYYKELRSKNKEEKNNQNTEVDADKEVIAGRNAILEAIKSGREINKILFQEGIEK 60 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VR 130 + + + VP + +D + HQG+ AP LD + Sbjct: 61 GRLKAIFSIANEKKIVCQEVPKRKLDNSTTER--HQGVIAFVAPYNYFELDEVLNKIEIN 118 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + L++LDH+ DPHN+GAI+RSA A G+I KR + S K+++GA+EH+P I Sbjct: 119 KNTTLLLLDHIEDPHNLGAIIRSAEASGVKGVIIPKRRAAVVSQTAVKASAGAIEHMPVI 178 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETAT 249 R+S+L DA++K+ GF G + + +I D + +++G EG+G+ Sbjct: 179 RVSSLIDAIKKLKEKGFWIAGTTLTERSEDYTKIAKDVPLVIVVGNEGEGMSKVVTNECD 238 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278 + HL M G +++LNVS AA + +Y Sbjct: 239 FLYHLPMLGKVQSLNVSVAAGIVMYERIK 267 >gi|262379400|ref|ZP_06072556.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|262298857|gb|EEY86770.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 263 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 101/257 (39%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K ++ +++ + + L G H + L KI L +T+ AL D+ Sbjct: 13 SKDNPKIKHLRGLIEQNSYRKKQRQTILEGTHLCLSWLQENK-KIHSLFSTEQALNHPDF 71 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + L + V + + + + + L++ ++V D Sbjct: 72 EQILEYYQGHVFVLSEALYRDLSTLGTSLACLAIIDLPTNTQPLQYHLDTLIL--ENVQD 129 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LRSA A + ++ T+ + S + ++ GA + L D L+ Sbjct: 130 PGNVGTLLRSAAAANIQQVVCTQGSASLWSPRVLRAGMGAHFSLNIYENVQLEDILE--- 186 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + SS + + Q+ A ILG EG+G + A ++ + PG ++L Sbjct: 187 KFEIPVFVTSSHQSESIYQQDLTQPCAWILGNEGQGASAYALQHAKAVV-IPQPGGQESL 245 Query: 264 NVSNAAAVALYITQNHF 280 NV+ A ++ + Sbjct: 246 NVAVAGSICFFEMVRQR 262 >gi|255319437|ref|ZP_05360652.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens SK82] gi|255303505|gb|EET82707.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens SK82] Length = 258 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 101/257 (39%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K ++ +++ + + L G H + L KI L +T+ AL D+ Sbjct: 8 SKDNPKIKHLRGLIEQNSYRKKQRQTILEGTHLCLSWLQENK-KIHSLFSTEQALNHPDF 66 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + L + V + + + + + L++ ++V D Sbjct: 67 EQILEYYQGHVFVLSEALYRDLSTLGTSLACLAIIDLPTNTQPLQYHLDTLIL--ENVQD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LRSA A + ++ T+ + S + ++ GA + L D L+ Sbjct: 125 PGNVGTLLRSAAAANIQQVVCTQGSASLWSPRVLRAGMGAHFSLNIYENVQLEDILE--- 181 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + SS + + Q+ A ILG EG+G + A ++ + PG ++L Sbjct: 182 KFEIPVFVTSSHQSESIYQQDLTQPCAWILGNEGQGASAYALQHAKAVV-IPQPGGQESL 240 Query: 264 NVSNAAAVALYITQNHF 280 NV+ A ++ + Sbjct: 241 NVAVAGSICFFEMVRQR 257 >gi|148270170|ref|YP_001244630.1| RNA methyltransferase [Thermotoga petrophila RKU-1] gi|170288875|ref|YP_001739113.1| RNA methyltransferase [Thermotoga sp. RQ2] gi|281412488|ref|YP_003346567.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga naphthophila RKU-10] gi|147735714|gb|ABQ47054.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga petrophila RKU-1] gi|170176378|gb|ACB09430.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga sp. RQ2] gi|281373591|gb|ADA67153.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga naphthophila RKU-10] Length = 242 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 98/237 (41%), Gaps = 10/237 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG + AL N I ++ K + + + + + G Sbjct: 3 VYGRKILEEALRNN-VPIKKVFFQKMQNPGSYFLSLVEEVEKRGIKYSFESEEKLKNLSG 61 Query: 107 KEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + HQG+ + +++ + + L+++LD + DPHN+GAI+R++V +GII Sbjct: 62 TKK-HQGVVFDIEEYRYSSVEEILEAKTPPLIVLLDQIQDPHNLGAIVRTSVGAGANGII 120 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K S + + K + G + ++NL ++++ G S P+ +E Sbjct: 121 IPKDKSVKVTETVVKVSVGTVFRARIAVVTNLARTIEELKEKGVW-TYASDIDGTPIYEE 179 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + G EG+G+R +E + + M I +LNVS + V L+ Sbjct: 180 DFTFPTAFVFGNEGEGIRRLVREKCDRVVTIPMENDIDSLNVSVSVGVVLFEAVRQR 236 >gi|167837026|ref|ZP_02463909.1| RNA methyltransferase, TrmH family protein [Burkholderia thailandensis MSMB43] Length = 262 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 57/261 (21%), Positives = 104/261 (39%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK+++S + + L G+H SA L+ + + T ALA Sbjct: 2 KAITSRDNPLYKRLKSLAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCV-VTDGALA 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + + P + V P + + GL L A V ++ +++ Sbjct: 61 HAEAREIVARIEPARVVTLPDALFGQLSNVVNGVGLLLLVARPAPALPARVADTSVVL-- 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +SA GA + + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVKRVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDIDAGTL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ S + + +A + G EG G+ + ++ AT + PG Sbjct: 179 IE---RLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWRDAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256 >gi|302385702|ref|YP_003821524.1| RNA methyltransferase, TrmH family, group 3 [Clostridium saccharolyticum WM1] gi|302196330|gb|ADL03901.1| RNA methyltransferase, TrmH family, group 3 [Clostridium saccharolyticum WM1] Length = 246 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 104/242 (42%), Gaps = 9/242 (3%) Query: 47 ENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E + G + V A + K++ ++ + + V + +D++ Sbjct: 3 EEFTIEGRNAVLEAFRSGKTIDKLYVQKGVQDGPIQSIIREAKKKDTILNFVERERLDQM 62 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + +A A + D L +LD + DPHN+GAI+R+A Sbjct: 63 SEEGHHQGVIAHAAAYEYAEVEDLLKAAEEKGEPPFLFLLDGIEDPHNLGAIIRTANLAG 122 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I KR + +A +AK+++GAL + P +++NLT ++++ G + + Sbjct: 123 AHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLTATMEELKKRGMWFVCA-DMGGE 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + I L++G+EG G+ +ET +A + M G I +LN S AA V Y Sbjct: 182 VMYRLDLKGPIGLVIGSEGNGVGKLVRETCDMVASIPMKGNIDSLNASVAAGVLAYEIVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|83951350|ref|ZP_00960082.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius nubinhibens ISM] gi|83836356|gb|EAP75653.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius nubinhibens ISM] Length = 259 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 96/249 (38%), Positives = 147/249 (59%), Gaps = 9/249 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++++ S E ++L+G+H V AL NP+R +L+ TKNA +L DA + Sbjct: 10 KEQAKKASAAETVWLFGLHAVRDALMNPARDKLRLIVTKNACDKL-QDAIDAAGITPEMA 68 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAIL 151 P+ + ++VHQG ALE PL +L+ V L++LD V DPHN+GAIL Sbjct: 69 DPRKFSAPIDPQSVHQGAALEVKPLNWGSLEDVALREGVGAPRLLLLDRVTDPHNVGAIL 128 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F +I + S E+ LAK+ASGALE PY+R+ NL DA+ ++ + GF +G Sbjct: 129 RSAEVFGAQAVIAPRHGSAPETGALAKTASGALERQPYLRVRNLADAISELQAMGFLVLG 188 Query: 212 LSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 L+ +++ ++ +++ +AL+LGAEG GLR KT+ET + + G +LNVSNA Sbjct: 189 LAGEAEDTIDAALDGMRDRPVALVLGAEGPGLRQKTRETCDKLVKIPFAGGFGSLNVSNA 248 Query: 269 AAVALYITQ 277 AAV+LY ++ Sbjct: 249 AAVSLYASR 257 >gi|328545333|ref|YP_004305442.1| RNA methyltransferase, TrmH family [polymorphum gilvum SL003B-26A1] gi|326415075|gb|ADZ72138.1| RNA methyltransferase, TrmH family [Polymorphum gilvum SL003B-26A1] Length = 279 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 91/258 (35%), Gaps = 4/258 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++ K+++ +H SQ G+ + AL + L + + Sbjct: 18 SHSNPIVKEIKGLVTLRKHRSQSGLFVAEGLKLATDALAAGWSVRYLALGPEARDNPVAQ 77 Query: 84 DANLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 A + V + I ++ + + L + + + LD Sbjct: 78 RAAASAKARGALILEVNTGVLAAITRRDNPQMVVGVYEQQLTPVDAIDPARATVWIALDR 137 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R+A A G++ + + ++ G+L H+P R+S Sbjct: 138 VRDPGNLGTIIRTADAVGASGVMLVGDCTDPFAVEAVRATMGSLFHVPLARLSTD-AFKA 196 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 W +G + ++ L++G E +GL + + + G Sbjct: 197 LAAKWPGMVVGTHLEGSVDYRSLDYSEPALLLMGNEQQGLPADMAACCSHLVRIPQVGQA 256 Query: 261 KALNVSNAAAVALYITQN 278 +LN++ A +ALY + Sbjct: 257 DSLNLAVATGIALYEIRR 274 >gi|27467212|ref|NP_763849.1| putative tRNA/rRNA methyltransferase [Staphylococcus epidermidis ATCC 12228] gi|242241863|ref|ZP_04796308.1| RNA methyltransferase [Staphylococcus epidermidis W23144] gi|293367907|ref|ZP_06614545.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|27314754|gb|AAO03891.1|AE016744_294 putative tRNA/rRNA methyltransferase [Staphylococcus epidermidis ATCC 12228] gi|242234641|gb|EES36953.1| RNA methyltransferase [Staphylococcus epidermidis W23144] gi|291317936|gb|EFE58344.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|329738058|gb|EGG74279.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis VCU045] Length = 255 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E++ + G H V A+ + KI K V+TVP +D + Sbjct: 8 EDIVIVGRHAVKEAIISGHAINKILIQDGIKKQQINDILKNAKSQKLIVQTVPKSKLDFL 67 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D +++LD + DPHN+G+ILR+A A Sbjct: 68 A--NAPHQGVAALVAPYEYANFDEFLQKQKKKARYSTVIILDGLEDPHNLGSILRTADAS 125 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D +I KR S + + +AK+++GA++H+P IR++NL+ + ++ GF G +++ Sbjct: 126 GVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWIAGTEANNA 185 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + +++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 186 TDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVY 245 Query: 278 NHF 280 Sbjct: 246 RKR 248 >gi|255325869|ref|ZP_05366961.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium tuberculostearicum SK141] gi|255297081|gb|EET76406.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium tuberculostearicum SK141] Length = 315 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 73/288 (25%), Positives = 132/288 (45%), Gaps = 26/288 (9%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN- 63 + K ++I+ K H AKL R+ R RH + + + G + V L+ Sbjct: 38 TPKAEDRIYHAK--HKAKLERDRR---------NSGRHQKETAEMVV-GRNPVIECLHAK 85 Query: 64 -PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 P+ ++ + T+N RL + P+ V +D++ G +HQG+ L+ P Sbjct: 86 VPATTLYIVAGTRNDK-RLSEAVAMCNTRNIPIIEVQRHEMDRMTG-NGMHQGIGLQIPP 143 Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 +D + ++LD++ DP N+GA++RS AF DG+I +R S S + Sbjct: 144 YKYADVDELIARAAENARPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVT 203 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALI 232 AV ++++G +P R +N+T +Q+ G+Q IGL + + D + ++ Sbjct: 204 AVAWRTSAGTAARLPVARATNITRTVQQFQKSGYQVIGLDAGGEHTLDTYNGATDPVVIV 263 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +G+EGKG+ +E + + M +++LN S AA L Sbjct: 264 IGSEGKGISRLVRENCDVIMSIPMTDWVESLNASVAAGSVLSEFARQR 311 >gi|152979716|ref|YP_001345345.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus succinogenes 130Z] gi|150841439|gb|ABR75410.1| RNA methyltransferase, TrmH family, group 3 [Actinobacillus succinogenes 130Z] Length = 245 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 110/240 (45%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V + L + ++ A K RL N H V+ + QT+D Sbjct: 5 IYGIHAVKSFLERTPELVVEVYALKGRDDKRLQPLLNELHNLGISVQFLNRQTLDNKA-H 63 Query: 108 EAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 VHQG+ P + + LL+VLD V DPHN+GA LR+A A D Sbjct: 64 GEVHQGIIARVQPAKELNESDLDNILNGKPNPLLLVLDGVTDPHNLGACLRTADAAGVDA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220 +I K S +++ K A GA E +P IR++NL S +G + ++ + L Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAEVLPLIRVTNLARTLRDIQQSHNIWVVGTAGEASETL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQTELTGSLALVMGAEGDGMRRLTRECCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|27467748|ref|NP_764385.1| rRNA methylase [Staphylococcus epidermidis ATCC 12228] gi|27315292|gb|AAO04427.1|AE016746_217 rRNA methylase [Staphylococcus epidermidis ATCC 12228] Length = 246 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 101/277 (36%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ KI + +K R + + G+H + A Sbjct: 1 MEQITSAQNSKIKNANKL-------------------KKKRERDKTGLALVEGIHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I + + ++ D V + + + + G A+ P Sbjct: 42 YQSQIEVIQLFIVDTDRMSSSIIDYAK----EVYQINLKVAEALSGTVTPQGFFAIIKKP 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 TL ++++D + DP N+G ++R+A A D I+ K + + +++ Sbjct: 98 TYDKTLAKQ-----VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ HIP I Q + + Q ALILG EG+G+ Sbjct: 153 QGSIFHIPVIFDDINNYIHQFNGPVYGTALENAVSFNDIEAQANF----ALILGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P + T + + G ++LNV+ A ++ +Y + Sbjct: 209 NPDLLKETTQNLTIPIYGKAESLNVAIAGSILMYQLK 245 >gi|167581493|ref|ZP_02374367.1| RNA methyltransferase, TrmH family protein [Burkholderia thailandensis TXDOH] Length = 262 Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 106/261 (40%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + L G+H SA L+ + + T AL+ Sbjct: 2 KAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCV-VTDGALS 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + + P + V P + + GL L A S + V ++ +++ Sbjct: 61 HAEARETVARIEPARVVTLPDALFGQLSNVVNGVGLLLLVARPASALPERVSDTSVVL-- 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +SA GA + + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ S + + +A + G EG G+ + ++ AT + PG Sbjct: 179 IE---RLAIPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRWRDAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256 >gi|167816366|ref|ZP_02448046.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei 91] Length = 262 Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 58/261 (22%), Positives = 104/261 (39%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + E L G H SA L+ + + T ALA Sbjct: 2 KAITSRDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCV-VTDGALA 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + + P + V P + + GL L A V + +++ Sbjct: 61 HEEARGIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVARPAPALPARVAGTSVVL-- 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + + S+ + +SA GA + + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ S + + +A + G EG G+ + +E AT + PG Sbjct: 179 IE---RLSIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256 >gi|224824152|ref|ZP_03697260.1| tRNA/rRNA methyltransferase (SpoU) [Lutiella nitroferrum 2002] gi|224603571|gb|EEG09746.1| tRNA/rRNA methyltransferase (SpoU) [Lutiella nitroferrum 2002] Length = 264 Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 103/260 (39%), Gaps = 13/260 (5%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82 ++ K + Q +R + + + L G+H + AAL + AL R + Sbjct: 10 SPHNDTLKHLARLVQFARDRRKDDVIVLEGIHLLEAALEQGIVPAQC-FINEAALGRAEV 68 Query: 83 --WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 A LP VP + K+ + + +A+ P R S ++L+ Sbjct: 69 SVLLARLPQTLSPLVVPEALLGKLTSLSSAPELIAVCPRPHPP------RRSGSCLLLED 122 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G ILRSA A + +K + S + ++ GA + ++L + Sbjct: 123 IQDPGNMGTILRSAAASGVMEVFLSKGCADVFSPKVLRAGMGAHFVLNLHEAADL---AE 179 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + + + + + L + +A + G EG G+ + A + MPG Sbjct: 180 VLGGFAGRKLVTHLEGSQSLYAQDLRGDVAFVFGNEGAGVSAGLLQLADCRVRIPMPGHA 239 Query: 261 KALNVSNAAAVALYITQNHF 280 ++LNV+ AA + L+ Sbjct: 240 ESLNVAMAATICLFERVRQL 259 >gi|307244300|ref|ZP_07526415.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM 17678] gi|306492450|gb|EFM64488.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM 17678] Length = 256 Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 59/282 (20%), Positives = 107/282 (37%), Gaps = 26/282 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K +EK ++K S+ + + G+ TV A Sbjct: 1 MAYIKSKDNEKFKTIKSLLA-------------------SKKRYKEKKYLAEGLRTVELA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + I ++ + + LD V T+ D++ E + + Sbjct: 42 LEHGAD-IDMVILREGSEFDLD-----LKDLRVHTLSKDLYDQVSDTENSQGIMVVVKMR 95 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 LS + ++VLD + DP N+G I+R+A A D I K + + +SA Sbjct: 96 DLSKEDFDPSRHRKVLVLDRLQDPGNVGTIIRTADAMGFDLICMAKGCVDVYNPKVVRSA 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ + I + + L + G Q + S D+ ++ D AL+LG E G+ Sbjct: 156 MGSGFY-MDILLESQEVILSILKGAGLQIVSSSLDTDNYYDEVTYADGCALVLGNEANGI 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 E + + + M G ++ NV+ +AA+ + K Sbjct: 215 NDFWIENSDLLVKIPMYGKAESFNVAISAALLMSKVIKRKNK 256 >gi|311740179|ref|ZP_07714011.1| RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304734|gb|EFQ80805.1| RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 315 Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 72/288 (25%), Positives = 132/288 (45%), Gaps = 26/288 (9%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN- 63 + K ++I+ K H AKL R+ R RH + + + G + V L+ Sbjct: 38 TPKAEDRIYHAK--HKAKLERDRR---------NSGRHQKETAEMVV-GRNPVIECLHAK 85 Query: 64 -PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 P+ ++ + T+N RL + P+ V +D++ G +HQG+ L+ P Sbjct: 86 VPATTLYIVAGTRNDK-RLSEAVAMCNTRNIPIIEVQRHEMDRMTG-NGMHQGIGLQIPP 143 Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 +D + ++LD++ DP N+GA++RS AF DG+I +R S S + Sbjct: 144 YKYADVDELIARAAENARPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVT 203 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALI 232 AV ++++G +P R +N+T +Q+ G+Q +GL + + D + ++ Sbjct: 204 AVAWRTSAGTAARLPVARATNITRTVQQFQKSGYQVVGLDAGGEHTLDTYNGATDPVVIV 263 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +G+EGKG+ +E + + M +++LN S AA L Sbjct: 264 IGSEGKGISRLVRENCDVIMSIPMTDWVESLNASVAAGSVLSEFARQR 311 >gi|254422841|ref|ZP_05036559.1| RNA methyltransferase, TrmH family, group 3, putative [Synechococcus sp. PCC 7335] gi|196190330|gb|EDX85294.1| RNA methyltransferase, TrmH family, group 3, putative [Synechococcus sp. PCC 7335] Length = 365 Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 74/292 (25%), Positives = 127/292 (43%), Gaps = 19/292 (6%) Query: 5 SKKKSEKIFSLKDS--HYAKLR-RNHRDYKKMQSFNQKSRHT---SQPENLFLYGVHTVS 58 SK +K + S H K R +R + + SR +YG H V Sbjct: 47 SKPDWQKGDRPRKSSDHLGKSRVEGNRIRQSFSRDHLDSRFESIDEDTSPDLIYGRHAVE 106 Query: 59 AALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 AA+ R + +L ++ R + V V + ++ + A HQG+ Sbjct: 107 AAIEAG-RSLNRLWVNAKLHYDSHFRPLIATAKANGSVVDEVENVRLSQMT-QGASHQGI 164 Query: 115 ALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + + L+ +++ D + DPHN+GAI+RSA A GI+ +R Sbjct: 165 VAQVSAYEYVDLEVLVQQAKNKARRPVIVAADGITDPHNLGAIIRSAEAIGAQGIVIPQR 224 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + ++ +AK ++GALE+IP R+ NL AL+ + S F GL++++ + + + Sbjct: 225 RAVGVTSTVAKVSAGALENIPIARVINLGRALEYLKSNSFWIYGLTAEAAQSIHTTDFSA 284 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L++GAEG GL Q + + + G +LN S A +ALY Sbjct: 285 PVVLVVGAEGSGLSLSVQNLCDQLVSIELSGKTPSLNASVATGMALYEIYRQ 336 >gi|269925885|ref|YP_003322508.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC BAA-798] gi|269789545|gb|ACZ41686.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC BAA-798] Length = 267 Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 102/259 (39%), Gaps = 5/259 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R+++ K + ++ R + G + A+ + + L + + + R Sbjct: 4 SRSNQQVKWFRLLRER-RGRKASGAFLVEGPRAIQQAMVAGHKPLKVLYSPEVVVRRDVV 62 Query: 84 DANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 + L P+ V + + +A P N+ ++VLD Sbjct: 63 NKVLGQIGSETPLLEVSEDVLSSVSDTVTSQGIIAAFELLSWHPREGVNANAGPVLVLDR 122 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V+DP N+G +LRSA A ++ ++ + + ++++GAL + + + Sbjct: 123 VSDPGNVGTLLRSAAAAGSAAVLLSEGSADPYNPKAVRASAGALF-AVSFAVLPWEEIHE 181 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 +H+ + SDS + A+++G+E GL + +T + M I Sbjct: 182 VLHTVPKRFAAYYSDSSQAYYLADLCPPCAILVGSEASGLSHQALSLSTHNLWIPMQNNI 241 Query: 261 KALNVSNAAAVALYITQNH 279 ++LN + A ++ L+ ++ Sbjct: 242 ESLNAAVAGSILLFESRRQ 260 >gi|118594777|ref|ZP_01552124.1| probable RNA methyltransferase [Methylophilales bacterium HTCC2181] gi|118440555|gb|EAV47182.1| probable RNA methyltransferase [Methylophilales bacterium HTCC2181] Length = 248 Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 108/242 (44%), Gaps = 11/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG H++++ + + + + + +A + +D ++ Sbjct: 6 IIYGFHSITSRIRLDASSVKDVYLDESRNDARMADLLKLIKENDIAFHLSSKDRLDGMI- 64 Query: 107 KEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ + LL++LD V DPHN+GA R A A Sbjct: 65 PSSKHQGVIANIFESKQKYVTIEDVLEEVTSEPPLLLILDGVEDPHNLGACFRVADAMGV 124 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 II K + +A + K A G E +P+I ++N+ ++ + G IG ++K Sbjct: 125 HAIICPKDSAVGVNATVRKVACGGAESVPFIAVTNIGRTIRTLKDQGLFIIGTDGEAKHN 184 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L QE IA++LG+EGKG+R T+E S+ + M G +++LNVS A+ + L + Sbjct: 185 LYQENLKGPIAMVLGSEGKGMRRLTRELCDSLVSIPMFGQVESLNVSVASGICLSEIRRQ 244 Query: 280 FA 281 + Sbjct: 245 RS 246 >gi|254189277|ref|ZP_04895788.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei Pasteur 52237] gi|157936956|gb|EDO92626.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei Pasteur 52237] Length = 262 Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 58/261 (22%), Positives = 104/261 (39%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + E L G H SA L+ + + T ALA Sbjct: 2 KAITSRDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCV-VTDGALA 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + + P + V P + + GL L A V + +++ Sbjct: 61 HEEARGIVARIEPTRVVTLPDVLFGQLSNVVNGVGLLLLVARPAPALPARVAGTSVVL-- 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + + S+ + +SA GA + + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ S + + +A + G EG G+ + +E AT + PG Sbjct: 179 IE---RLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256 >gi|319399720|gb|EFV87969.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Staphylococcus epidermidis FRI909] Length = 249 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E++ + G H V A+ + KI K V+TVP +D + Sbjct: 2 EDIVIVGRHAVKEAIISGHAINKILIQDGIKKQQINDILKNAKSQKLIVQTVPKSKLDFL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D +++LD + DPHN+G+ILR+A A Sbjct: 62 A--NAPHQGVAALVAPYEYANFDEFLQKQKKKDRYSTVIILDGLEDPHNLGSILRTADAS 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D +I KR S + + +AK+++GA++H+P IR++NL+ + ++ GF G + + Sbjct: 120 GVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDSGFWIAGTEASNA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + +++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 180 TDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVY 239 Query: 278 NHF 280 Sbjct: 240 RKR 242 >gi|149183933|ref|ZP_01862318.1| tRNA/rRNA methyltransferase [Bacillus sp. SG-1] gi|148848356|gb|EDL62621.1| tRNA/rRNA methyltransferase [Bacillus sp. SG-1] Length = 247 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 110/242 (45%), Gaps = 11/242 (4%) Query: 48 NLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + F+ G + V AL + KI+ ++ V+ VP Q I+ +V Sbjct: 3 SEFIAGRNPVLEALKSGRDINKIWIAEGSQKGSMGQITSLAKEKKVLVQFVPKQKIEGMV 62 Query: 106 GKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 HQG+ + A +D ++LD + DPHN+G+I+R+A A Sbjct: 63 RD--NHQGVVAQVAAYQYAEMDELYARAEQKGEIPFFLMLDELEDPHNLGSIMRTADASG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII KR + +A +AK+++GA+EHIP R++NL + ++ G G + Sbjct: 121 VHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLAQTIDELKERGVWVAGTDAKGAD 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + I L++G+EGKG+ ++ + + M G + +LN S AA++ +Y Sbjct: 181 DYRRLDGTLPICLVIGSEGKGIGRLIRDKCDFLIKMPMVGHVTSLNASVAASILMYEVYR 240 Query: 279 HF 280 Sbjct: 241 KR 242 >gi|53719753|ref|YP_108739.1| putative RNA methylase protein [Burkholderia pseudomallei K96243] gi|53723724|ref|YP_103180.1| RNA methyltransferase [Burkholderia mallei ATCC 23344] gi|67641695|ref|ZP_00440464.1| RNA methyltransferase, TrmH family [Burkholderia mallei GB8 horse 4] gi|121599003|ref|YP_993356.1| RNA methyltransferase [Burkholderia mallei SAVP1] gi|124384612|ref|YP_001029207.1| RNA methyltransferase [Burkholderia mallei NCTC 10229] gi|126438845|ref|YP_001059453.1| RNA methyltransferase [Burkholderia pseudomallei 668] gi|126448589|ref|YP_001080863.1| RNA methyltransferase [Burkholderia mallei NCTC 10247] gi|126452067|ref|YP_001066736.1| RNA methyltransferase [Burkholderia pseudomallei 1106a] gi|134277081|ref|ZP_01763796.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 305] gi|167000565|ref|ZP_02266376.1| RNA methyltransferase, TrmH family [Burkholderia mallei PRL-20] gi|167720148|ref|ZP_02403384.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei DM98] gi|167739155|ref|ZP_02411929.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei 14] gi|167824745|ref|ZP_02456216.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei 9] gi|167846277|ref|ZP_02471785.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei B7210] gi|167894858|ref|ZP_02482260.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei 7894] gi|167903247|ref|ZP_02490452.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei NCTC 13177] gi|167919498|ref|ZP_02506589.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei BCC215] gi|226200151|ref|ZP_03795697.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei Pakistan 9] gi|237812792|ref|YP_002897243.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei MSHR346] gi|242314873|ref|ZP_04813889.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1106b] gi|254177512|ref|ZP_04884167.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 10399] gi|254179337|ref|ZP_04885936.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1655] gi|254197657|ref|ZP_04904079.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei S13] gi|254200132|ref|ZP_04906498.1| RNA methyltransferase, TrmH family [Burkholderia mallei FMH] gi|254206470|ref|ZP_04912822.1| RNA methyltransferase, TrmH family [Burkholderia mallei JHU] gi|254261411|ref|ZP_04952465.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1710a] gi|254297221|ref|ZP_04964674.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 406e] gi|254358122|ref|ZP_04974395.1| RNA methyltransferase, TrmH family [Burkholderia mallei 2002721280] gi|52210167|emb|CAH36146.1| putative RNA methylase protein [Burkholderia pseudomallei K96243] gi|52427147|gb|AAU47740.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 23344] gi|121227813|gb|ABM50331.1| RNA methyltransferase, TrmH family [Burkholderia mallei SAVP1] gi|124292632|gb|ABN01901.1| RNA methyltransferase, TrmH family [Burkholderia mallei NCTC 10229] gi|126218338|gb|ABN81844.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 668] gi|126225709|gb|ABN89249.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1106a] gi|126241459|gb|ABO04552.1| RNA methyltransferase, TrmH family [Burkholderia mallei NCTC 10247] gi|134250731|gb|EBA50810.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 305] gi|147749728|gb|EDK56802.1| RNA methyltransferase, TrmH family [Burkholderia mallei FMH] gi|147753913|gb|EDK60978.1| RNA methyltransferase, TrmH family [Burkholderia mallei JHU] gi|148027249|gb|EDK85270.1| RNA methyltransferase, TrmH family [Burkholderia mallei 2002721280] gi|157807495|gb|EDO84665.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 406e] gi|160698551|gb|EDP88521.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 10399] gi|169654398|gb|EDS87091.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei S13] gi|184209877|gb|EDU06920.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1655] gi|225927835|gb|EEH23876.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei Pakistan 9] gi|237505869|gb|ACQ98187.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei MSHR346] gi|238522656|gb|EEP86099.1| RNA methyltransferase, TrmH family [Burkholderia mallei GB8 horse 4] gi|242138112|gb|EES24514.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1106b] gi|243063496|gb|EES45682.1| RNA methyltransferase, TrmH family [Burkholderia mallei PRL-20] gi|254220100|gb|EET09484.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1710a] Length = 262 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 58/261 (22%), Positives = 104/261 (39%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + E L G H SA L+ + + T ALA Sbjct: 2 KAITSRDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCV-VTDGALA 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + + P + V P + + GL L A V + +++ Sbjct: 61 HEEARGIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVARPAPALPARVAGTSVVL-- 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + + S+ + +SA GA + + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ S + + +A + G EG G+ + +E AT + PG Sbjct: 179 IE---RLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256 >gi|332970729|gb|EGK09709.1| RNA methyltransferase [Desmospora sp. 8437] Length = 247 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 114/247 (46%), Gaps = 12/247 (4%) Query: 47 ENLFLYGVHTVSAALNNP----SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 EN ++ G V AL + + + V+ VP QT+D Sbjct: 2 ENEWVIGRRAVMEALKAGRSMGKLLVAEGAGRGKGGLGPLLEEARRQGVDVQQVPRQTLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ HQG+A + P L+ +++LD + DPHN+G+ILR+A Sbjct: 62 RVAAGL-NHQGVAAQAEPWRYAELEELFQRAEERDEPPFILLLDGIEDPHNLGSILRTAD 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G++ KR + + +AK+++GA+EH+P +R++NL ++ G + +D Sbjct: 121 ASGVHGVVIPKRRAAGLTPTVAKTSAGAVEHVPVVRVTNLNRTADELKERGVWLVAGDAD 180 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + ++ + +AL++G EGKG+ + +E L M G + +LN S AAA+ +Y Sbjct: 181 ASARYDEMDYSLPVALVIGNEGKGVSRRLKEKCDFTVGLPMKGAVSSLNASVAAALLMYE 240 Query: 276 TQNHFAK 282 K Sbjct: 241 VLRGREK 247 >gi|306821097|ref|ZP_07454713.1| RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550790|gb|EFM38765.1| RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 246 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 14/243 (5%) Query: 50 FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G ++V A+ I+ K+ + +K V + +D + + Sbjct: 2 IIIGRNSVIEAIKKDRNLDTIYIKSGDKDERLKYIISIAKNKKILIKEVDRKKLDALA-Q 60 Query: 108 EAVHQGLALETAPLLSPTLDA----------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+A + + +M+LD + DPHN+GAI+RSA Sbjct: 61 GENHQGVAASASEYEYYDFEKLLDDIKVNKEQSKKNFVMILDKIEDPHNLGAIIRSAHLS 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D +I R S + + + K + GA ++ IR++NL DA++K+ G L Sbjct: 121 GVDAVIIPNRRSANVDSTVEKVSVGATSYMKIIRVTNLNDAIEKLKKAGLWIYCL-DMGN 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA+I+G EGKG+ ++ + + + M G I +LN S A+++ ++ Sbjct: 180 DYYFNTDLTGDIAVIVGNEGKGVSELIRKNSDFVISIPMLGKIDSLNASVASSIVMFEVL 239 Query: 278 NHF 280 Sbjct: 240 RQR 242 >gi|320528149|ref|ZP_08029314.1| RNA methyltransferase, TrmH family [Solobacterium moorei F0204] gi|320131497|gb|EFW24062.1| RNA methyltransferase, TrmH family [Solobacterium moorei F0204] Length = 247 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 101/277 (36%), Gaps = 37/277 (13%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS ++ KI + + K ++ + + G H + A Sbjct: 5 MEKISSLQNAKIKNW-------------------TLLHKKKYRDETGLFLVEGEHLIGEA 45 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + ++ + + + V P + K+ + A Sbjct: 46 LAANA--VETIVTDTTSPFDFEH---------IVEVTPAIMAKLSENVSN----VHYIAV 90 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 LD + ++LL+ LD + DP N+G ++R+A++F DG+ + + +S Sbjct: 91 CRQRKLDITKQNRLLL-LDGIQDPGNLGTLIRTAISFGFDGVYCSTETCDLYNDKAIRST 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GAL HIP +R T + + + +A ++G EG+G+ Sbjct: 150 QGALFHIPVVRKDFSTLIPALQSQGVKVIATS-LQESTTMGEIPVTECMAFVMGNEGQGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + M G ++LNV+ A + +Y + Sbjct: 209 HQDIIAQADFRVRIEMEG-FESLNVAVAGGIIMYHYR 244 >gi|13472801|ref|NP_104368.1| rRNA methylase [Mesorhizobium loti MAFF303099] gi|14023548|dbj|BAB50154.1| rRNA methylase [Mesorhizobium loti MAFF303099] Length = 274 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 38/255 (14%), Positives = 86/255 (33%), Gaps = 4/255 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K +++ K + Q G+ V AL+ + + A Sbjct: 9 NPLIKDIKALALK-KFRDQQNAFMAEGLKLVIDALDLGWQIRTLVFAKAGRGNPAVEKVA 67 Query: 87 L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V V + + I ++ + + + L+ N + + LD V D Sbjct: 68 ARTVAAGGTVLEVSEKVLVAITRRDNPQMVVGVFSQKFLALKDIRADNGDVWVALDRVRD 127 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+ A G+I + S ++ G++ +P + + + Sbjct: 128 PGNLGTVIRTVDAVGAKGVILVGDTTDPFSVETVRATMGSIFAVPVAKATTEAFLAWRGG 187 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + + + L++G E +GL + + + G +L Sbjct: 188 FSGLVAGTHLKGAVDYRSVDFSRGPVLLMMGNEQQGLPESLAASCDRLLRIPQAGRADSL 247 Query: 264 NVSNAAAVALYITQN 278 N++ A + L+ + Sbjct: 248 NLAVATGIMLFEIRR 262 >gi|260892311|ref|YP_003238408.1| RNA methyltransferase, TrmH family, group 3 [Ammonifex degensii KC4] gi|260864452|gb|ACX51558.1| RNA methyltransferase, TrmH family, group 3 [Ammonifex degensii KC4] Length = 254 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 108/243 (44%), Gaps = 5/243 (2%) Query: 44 SQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + +YG H V AL KI A PV+ VP + + Sbjct: 4 KEGGAELVYGRHAVKEALLAGRSLYKILVARGLGGAFFHELRSLAASRSVPVQIVPAEAL 63 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 D++ VHQG +P +LD + + L+VL ++ DP N+GAILR+A A Sbjct: 64 DRLTA-RGVHQGCVALVSPYNYASLDEILATHPSCLLVLAYITDPRNLGAILRTAAAVGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +G+I R + +A K+++G EH+ R++NL L+ + GF +G +D+K Sbjct: 123 EGVIIPSRRAAGLTAEALKASAGGAEHVKVARVTNLAQTLRYLKEQGFWVLGAEADAKVS 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L + N+ + +++G E GL + + + + LN S AAAV LY Sbjct: 183 LWEAEWNEPLVVVIGGEDTGLGKVVRRECDVLVRIPTTAKMPCLNASVAAAVILYEVLRR 242 Query: 280 FAK 282 K Sbjct: 243 QMK 245 >gi|83955674|ref|ZP_00964254.1| RNA methyltransferase, TrmH family, group 3 [Sulfitobacter sp. NAS-14.1] gi|83839968|gb|EAP79144.1| RNA methyltransferase, TrmH family, group 3 [Sulfitobacter sp. NAS-14.1] Length = 258 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 90/252 (35%), Positives = 143/252 (56%), Gaps = 7/252 (2%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 K ++ + + ++L+G+H V AL NP+R+ +L+ T NA +L+ Sbjct: 5 KWVVQKEQEKKADVNQTVWLFGLHAVRDALENPAREKIKLMVTPNAQIKLEEAIAKA-GI 63 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIG 148 + V P+ + +VHQG LE PL TL V + +++LD V DPHN+G Sbjct: 64 EPEVVDPRKFRPPLDPGSVHQGAVLEVKPLSWGTLKDVCIGAEAPRVLLLDRVTDPHNVG 123 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AILRSA ++ + ++ E+ LAK+ASGALE PY+R+ NL DA++++ S G+ Sbjct: 124 AILRSAEVLGASAVVGMRHHAAPETGALAKTASGALERQPYLRVRNLADAIKELQSMGYL 183 Query: 209 TIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +GL ++ +E ++ +AL+LGAEG GLR KT+ET ++ + G +LNV Sbjct: 184 VLGLDGEADMTVESALEGKRDRPVALVLGAEGPGLREKTKETVDALVRIDAGGGFGSLNV 243 Query: 266 SNAAAVALYITQ 277 SNAAA+ALY ++ Sbjct: 244 SNAAAIALYASR 255 >gi|289167184|ref|YP_003445451.1| rRNA/tRNA methylase [Streptococcus mitis B6] gi|288906749|emb|CBJ21583.1| rRNA/tRNA methylase [Streptococcus mitis B6] Length = 246 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 56/276 (20%), Positives = 107/276 (38%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L A P V + + + QG+ Sbjct: 40 VQAGVT-IEKIFALENYRDQL---AAFPQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 +D + L + + V DP N+G I+R+A A G+I +++ + S +S Sbjct: 92 EEVGQVDLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSEKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+S+ + + S + + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRMSSQALLKETKEAAIPVLATTLSKDSVDYRELPPIENFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245 >gi|307709738|ref|ZP_07646189.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564] gi|307619440|gb|EFN98565.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564] Length = 246 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 105/276 (38%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A ++ + A P V + + + QG+ Sbjct: 40 VQAGVT-IEKIFALESYR---NQLAAFPQTI---WVSEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 +D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQVDFSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+S+ + + S + + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRMSSQRLLEEAKKASIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245 >gi|189499560|ref|YP_001959030.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium phaeobacteroides BS1] gi|189495001|gb|ACE03549.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium phaeobacteroides BS1] Length = 247 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 107/239 (44%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG ++V L + KI ++ N + P+ + + +I G Sbjct: 8 VVYGRNSVLELLGSDPEKIEKIYMQFNTGHFKLKEILITARRSKIPLGKARLEKLSEIAG 67 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ + + L+ + LL+VL +NDPHN+GAI+R+A A + DG Sbjct: 68 TTK-HQGVCALISSVRYYQLEEILQHPRNTSPLLVVLPGLNDPHNVGAIIRTAEAVATDG 126 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + +A + K+++GA+ H ++ +L L+ + GFQ I ++K Sbjct: 127 VILVEGKGSPVNAAVHKASAGAVSHSRLCKVKSLQACLKMLREEGFQIIAADMHAEKNYT 186 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A I+G E KGL ++ + M G +++LNVS +A V LY Sbjct: 187 EVDFRIPSAFIMGTEEKGLDALNLNEKDTLVRIPMAGCVESLNVSVSAGVLLYEAMRQR 245 >gi|28198726|ref|NP_779040.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1] gi|71897946|ref|ZP_00680151.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1] gi|182681419|ref|YP_001829579.1| RNA methyltransferase [Xylella fastidiosa M23] gi|52783310|sp|Q87D65|RLMB_XYLFT RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|28056817|gb|AAO28689.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1] gi|71732190|gb|EAO34245.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1] gi|182631529|gb|ACB92305.1| RNA methyltransferase, TrmH family, group 3 [Xylella fastidiosa M23] gi|307579865|gb|ADN63834.1| RNA methyltransferase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 249 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 9/241 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ G++ V +++ N + + ++L KN+ + V+ V Q +D + G Sbjct: 7 WIVGINAVVSSIENDAEHVREVLVEAASKNSRLLDIEENARRKGIEVRRVTTQALDGVGG 66 Query: 107 KEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A A L D LL+VLD V DPHN+GA LRSA A Sbjct: 67 GVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAAAAGVT 126 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S +A + K++SGA + +P I + NL +L+++ GL+ + + L Sbjct: 127 AVIIPKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLAGEVETSL 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +AL+LG E GLR T+E +A + MPG +++LNVS AA V L+ Sbjct: 187 YALDLRGNVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFEAVRQR 246 Query: 281 A 281 Sbjct: 247 T 247 >gi|300790491|ref|YP_003770782.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32] gi|299800005|gb|ADJ50380.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32] Length = 318 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 66/274 (24%), Positives = 120/274 (43%), Gaps = 14/274 (5%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP--SRKIFQLLATK 75 A+ R H+ Y+ + ++ + + + + G + V AL + ++ L + Sbjct: 40 KAEDRPGHKAYRSANAATKRDQARQKKADKPELIAGRNPVVEALRAGVPATALYVALNIE 99 Query: 76 -NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------- 127 + + +P + +D+ AVHQGL L+ P D Sbjct: 100 IDDRVNDAVRLAGDKGISILEIPREELDRKT-NRAVHQGLGLQVPPFEYAHPDDLMAAAR 158 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L + LD V DP N+GA++RSA AF G++ +R S +AV ++++G + Sbjct: 159 NSGEVPLFVALDGVTDPRNLGAVIRSAAAFGAHGVLLPERRSAGMTAVAWRTSAGTAAKL 218 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQE 246 P +NLT L+ + G +GL +D +++ D + ++LG+EG+GL +E Sbjct: 219 PIAVATNLTRQLKAWANDGLMLVGLDADGSVDIDELELAADPLVIVLGSEGRGLSRLVRE 278 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T + + M +++LN S AA V L Sbjct: 279 TCDATVSIPMAAGVESLNASVAAGVLLAEVARRR 312 >gi|226324507|ref|ZP_03800025.1| hypothetical protein COPCOM_02290 [Coprococcus comes ATCC 27758] gi|225206955|gb|EEG89309.1| hypothetical protein COPCOM_02290 [Coprococcus comes ATCC 27758] Length = 249 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 102/238 (42%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V A + K++ L ++ R H + V + +++I Sbjct: 11 IEGRNAVMEAFRSGKPIDKVYILDGCQDGPIRSIVREAKKHDTILNFVTKERLNQISETG 70 Query: 109 AVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A A + D L++LD++ DPHN+GAI+R+A G+ Sbjct: 71 RHQGVIAQAAAYEYAQVEDMLELAKQKGEDPFLILLDNIEDPHNLGAIIRTANLAGAHGV 130 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K + +A +AK+++GAL + P +++NL ++++ G + + + Sbjct: 131 IIPKHRAAGLTATVAKTSAGALNYTPVAKVTNLVKTMEELKEKGLWFVCA-DMDGDVMYR 189 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G EG+G+ +ET A + M G I +LN S AA V Y Sbjct: 190 VNLKGPIGLVIGNEGEGVGRLVKETCDMTAAIPMKGDIDSLNASVAAGVLAYEIVRQR 247 >gi|118594703|ref|ZP_01552050.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181] gi|118440481|gb|EAV47108.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181] Length = 263 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 91/257 (35%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R+ +K+++ + + L G H V+ +N +L + Sbjct: 8 SRDSATFKRLKKIYSSKSYRLEVGKTILDGPHLVNTCCDNGMDIAEFILDASIKTDENNR 67 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + + + ++V+ L + L ++LD + D Sbjct: 68 LLTKYPKKKLHILSHELFCALSDLDSVNG---LMAIIDIPSHPYYSNGVGLHLLLDDIQD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GAILR+ A + +K S + + + G + + +L + ++ Sbjct: 125 PGNLGAILRTHAAAGNKFVFLSKGCCDLWSPKVIRGSQGTQFSLICYQQEDLALLIDRLE 184 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F + IA ILG EG+G+ + + M + M +++L Sbjct: 185 FSVFSLGMQGESVLNRK----FDQNIAFILGNEGRGISSTLLKKSDQMLSIPMIKNVESL 240 Query: 264 NVSNAAAVALYITQNHF 280 NV AA++ +Y F Sbjct: 241 NVGVAASIVIYEHARQF 257 >gi|57866117|ref|YP_187768.1| RNA methyltransferase [Staphylococcus epidermidis RP62A] gi|81675394|sp|Q5HRM1|TRMHL_STAEQ RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|90110722|sp|Q8CTT9|TRMHL_STAES RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|57636775|gb|AAW53563.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis RP62A] Length = 249 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E++ + G H V A+ + KI K V+TVP +D + Sbjct: 2 EDIVIVGRHAVKEAIISGHAINKILIQDGIKKQQINDILKNAKSQKLIVQTVPKSKLDFL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 A HQG+A AP D +++LD + DPHN+G+ILR+A A Sbjct: 62 A--NAPHQGVAALVAPYEYANFDEFLQKQKKKARYSTVIILDGLEDPHNLGSILRTADAS 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D +I KR S + + +AK+++GA++H+P IR++NL+ + ++ GF G +++ Sbjct: 120 GVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWIAGTEANNA 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + +++G+EG+G+ + + M G + +LN S AA++ +Y Sbjct: 180 TDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVY 239 Query: 278 NHF 280 Sbjct: 240 RKR 242 >gi|293191186|ref|ZP_06609119.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces odontolyticus F0309] gi|292820607|gb|EFF79576.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces odontolyticus F0309] Length = 325 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 77/290 (26%), Positives = 129/290 (44%), Gaps = 15/290 (5%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 + K ++ + +H K++R R+ ++ + KS +P + + G + V+ A Sbjct: 38 TPKAEDRTYHP--AHKRKVKREAREAQEAAIARARAKSSIRVKPGHELIAGRNPVAEAAR 95 Query: 63 N--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 P ++F L K+ PV V + +D AVHQG+A+E Sbjct: 96 ASVPIERVFVLDNVKDDRVEEVVRLASAMGAPVYEVTRRDLDVATD-GAVHQGVAIEVRG 154 Query: 121 LLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 LL+ LD V DPHN+GA+LRSA AF DG+I +R S + Sbjct: 155 YEYADASDLIAGSLQQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVN 214 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232 K ++GA +P R +NL AL++ G+ +GL PL + + ++ Sbjct: 215 TTAWKVSAGAAARVPVARATNLVRALEEAKQAGYFVVGLDGGGDAPLRGLSLADGPLVVV 274 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 GAEG GL +ET + + + +++LN + A +ALY + A+ Sbjct: 275 TGAEGAGLSRLVRETCDQIVSIPIASTVESLNAAVATGIALYEVASLRAQ 324 >gi|84393177|ref|ZP_00991941.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01] gi|84376229|gb|EAP93113.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01] Length = 246 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K ++ + + +D+ Sbjct: 3 NEFIYGIHAVKAVLEKDPARFIEAYVLKGRQDDRLLPLLNQLQQFGVSIQQMGRKPLDEK 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL + P LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-QGANHQGLIAKVKPAKQLNETHLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAVVMGAEGDGMRRLTRETCDDLIKIPMSGSVSSLNVSVASGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|145296637|ref|YP_001139458.1| hypothetical protein cgR_2545 [Corynebacterium glutamicum R] gi|140846557|dbj|BAF55556.1| hypothetical protein [Corynebacterium glutamicum R] Length = 313 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 64/273 (23%), Positives = 121/273 (44%), Gaps = 14/273 (5%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 A+ R H +K+ ++ R Q E + G + V L+ L + A Sbjct: 39 KAEDRTYHAAHKRKLERERRDRGRHQREMPELVVGRNPVLECLHA-RVPATALYVAEGAA 97 Query: 79 ARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------ 128 + PV V +D++ G +HQG+ L P + Sbjct: 98 NDERLSEAVHTAAGRNIPVLEVNKLELDRMTG-NGMHQGIGLAIPPYEYADVHDLIANAA 156 Query: 129 -VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + + ++LD++ DP N+GA++RS AF +G+I +R S S +AV ++++G + Sbjct: 157 TSKKPGMFVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARV 216 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P + +N+T +++ G+Q +GL + L+ D + +++G+EGKG+ +E Sbjct: 217 PVAKETNMTRVVKEFQQNGYQVVGLDAGGDHTLDTYDGTDNVVIVVGSEGKGISRLVREN 276 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + G +++LN S AA V L Sbjct: 277 CDTIMSIPTEGWVESLNASVAAGVVLSEFSRQR 309 >gi|153005091|ref|YP_001379416.1| RNA methyltransferase [Anaeromyxobacter sp. Fw109-5] gi|152028664|gb|ABS26432.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp. Fw109-5] Length = 245 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 119/244 (48%), Gaps = 12/244 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +YG++ V L + +L + A V++ P +D++ Sbjct: 3 VVYGLNPVREVLRAGGEGLSELWLAEGGTRGAAFGELERLGRAAGAKVRSAPRAKLDRLA 62 Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 G + HQG+ A ++ L++VLD V DPHN+GAI+RSA A Sbjct: 63 GTDR-HQGVVAMVADFRYAEVEDLLAAARASGRPPLVVVLDGVEDPHNLGAIIRSAHALG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++ K + + +AK+++GA+E P R++N++ L+ + G ++ L++D Sbjct: 122 AHGVVIPKDRAVGVTPAVAKASAGAVERCPVARVTNVSKTLEALKEAGIWSVALAADGDA 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 PL IAL+LG+EG+GLRP ++T A + M G + +L+VS +AAVALY Sbjct: 182 PLGAVDLTGPIALVLGSEGEGLRPLVRKTCDHSARIPMSGDLDSLSVSASAAVALYEAAR 241 Query: 279 HFAK 282 + Sbjct: 242 QRGR 245 >gi|78066159|ref|YP_368928.1| RNA methyltransferase TrmH, group 3 [Burkholderia sp. 383] gi|77966904|gb|ABB08284.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia sp. 383] Length = 247 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 117/239 (48%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + + + ++L + R D + + + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHTAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + S LD ++ LL+VLD V DPHN+GA LR A + Sbjct: 66 TER-HQGVVARVEDIPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S ++ L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|332706005|ref|ZP_08426078.1| putative rRNA methylase, group 3 [Lyngbya majuscula 3L] gi|332355265|gb|EGJ34732.1| putative rRNA methylase, group 3 [Lyngbya majuscula 3L] Length = 347 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 76/291 (26%), Positives = 137/291 (47%), Gaps = 18/291 (6%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQ----KSRH--TSQPENLFLYGVHTVSA 59 +K+ K K+ H K R H + + Q KS+ +++ E+ +YG H+V A Sbjct: 41 SQKNGKPP-RKNYHSRKPRAKHSHHSEETQPKQHGYPKSKLVSSTEEESDLIYGRHSVIA 99 Query: 60 ALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 AL N + + ++ + + + V P+ + +I K HQG+A Sbjct: 100 ALQNQHQLNRVWIISQLRYDPRFHSLLVQAKANGTVIDEVAPKRLSQIT-KGGNHQGVAA 158 Query: 117 ETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 + A L+ +L+ D +NDP N+GAI+R+A A G++ +R + Sbjct: 159 QIASYNYIDLNDLIDKAKWATEQPVLLACDGINDPQNLGAIIRTAEALGAQGLVIPQRRA 218 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 ++ + K A+GALE P R+ NL++AL+++ + GF G ++ + K L + + Sbjct: 219 VGVTSTVRKVAAGALETFPIARVVNLSNALEQLKTAGFWIYGTAAGTGKLLHKVDLTGSV 278 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L++G+EG GL ++Q + + + G +LN S A A+ LY T Sbjct: 279 VLVIGSEGNGLSLRSQSCCDMLISIPLQGKTPSLNASAATAMVLYETYRQR 329 >gi|332530183|ref|ZP_08406131.1| RNA methyltransferase [Hylemonella gracilis ATCC 19624] gi|332040375|gb|EGI76753.1| RNA methyltransferase [Hylemonella gracilis ATCC 19624] Length = 249 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 110/240 (45%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H V L I + ++A R + + K+ G Sbjct: 10 VLYGFHAVGVRLKTAPTSILDIYYDASRRDARMRQFIARAQEAGVRLIEADGLRLAKLAG 69 Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+A P+ LD + LL+VLD V DPHN+GA LR A Sbjct: 70 NHG-HQGVAARVQPIELARSLDDLLDDLVGPPLLLVLDGVTDPHNLGACLRVADGAGAHA 128 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG S D+ + L Sbjct: 129 VIAPKDHAVGLNATVAKVASGAAETVPYFMVTNLARTLGELKERNIWCIGTSDDAPQTLY 188 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 Q AL+LGAEG+G+R T++T ++ + M G +++LNVS A+ V LY Sbjct: 189 QSDLKGPTALVLGAEGEGMRQLTRKTCDALVSIPMKGGVESLNVSVASGVCLYEALRQRT 248 >gi|308070687|ref|YP_003872292.1| rRNA methylase [Paenibacillus polymyxa E681] gi|305859966|gb|ADM71754.1| rRNA methylase [Paenibacillus polymyxa E681] Length = 262 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 61/261 (23%), Positives = 100/261 (38%), Gaps = 4/261 (1%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARL 81 + N+ K+ +K +H ++ + G+H V AL + K A L Sbjct: 4 ISPNNARVKEWAQLLEK-KHRARQHKYIVEGIHLVQEALRSDVAVETVAYDLDKGIPAEL 62 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-PTLDAVRNSQLLMVLDH 140 + + P V I K + A+ S + + L+MVLD Sbjct: 63 NGLNPVDQPVEWVPVSAAVIAKCTDTKTPQSVFAIVRKEERSVFSALLEQPDALVMVLDG 122 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+RSA A G+I + + +S G+L H+P I S + L Sbjct: 123 VQDPGNVGTIIRSADAAGAAGVILGHGCADLYNPKTIRSTMGSLFHLPVIEGSLE-EFLP 181 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + S G + I S D+ L++G EG+G+ T + M G Sbjct: 182 QAKSKGARLISTSLDASLSCYTIDLRVSTWLVIGNEGQGISAATARMVDESVFIPMQGQA 241 Query: 261 KALNVSNAAAVALYITQNHFA 281 ++LN + A+ V L+ Sbjct: 242 ESLNAAMASTVLLFEAMRQRN 262 >gi|34497485|ref|NP_901700.1| tRNA methyltransferase [Chromobacterium violaceum ATCC 12472] gi|34103340|gb|AAQ59702.1| probable tRNA methyltransferase [Chromobacterium violaceum ATCC 12472] Length = 266 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 99/260 (38%), Gaps = 11/260 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82 ++ + K + Q SR + + L G+H + L + ++ + A + + Sbjct: 10 SPHNDEVKALARLVQHSRDRRKEGVMVLEGIHLAESCLQAGGE-LSRIYLNEAAAGKPEV 68 Query: 83 --WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 +LP V ++P + K+ + A P+ +A ++L+ Sbjct: 69 RRLLDSLPPGSTVVSLPEAVMSKVTALAS----AGELLALSPRPSPEAPPAQAARVMLED 124 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G ILR+A A + +K S + ++ GA + ++L L Sbjct: 125 IQDPGNLGTILRTAAAAGVYDVFLSKGCVDVFSPKVLRAGMGAHFALRIHEHADLAGELS 184 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + T S S + +A + G EG G+ A + + MPG Sbjct: 185 RFGGRKLVTHLEGSSSLYGHD---LTGPVAFVFGNEGAGVSDALLALADARIRIPMPGHA 241 Query: 261 KALNVSNAAAVALYITQNHF 280 ++LNV+ AA V L+ Sbjct: 242 ESLNVAMAATVCLFERVRQL 261 >gi|256421956|ref|YP_003122609.1| RNA methyltransferase, TrmH family, group 3 [Chitinophaga pinensis DSM 2588] gi|256036864|gb|ACU60408.1| RNA methyltransferase, TrmH family, group 3 [Chitinophaga pinensis DSM 2588] Length = 263 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 67/264 (25%), Positives = 112/264 (42%), Gaps = 13/264 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDW 83 R +KK F Q + + G + A+ +IF L + Sbjct: 2 EQRKFKKPGGFRQHAPRPKASSLVI--GRQPIVEAMKAGKAIERIFMLRGATGEIIPQIR 59 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLM 136 + P+ VP + ++ + A HQG T + L V + L + Sbjct: 60 QLAEQYNIPINLVPVEKLNGLTS--ANHQGCVAITGNINYLDLQDVISHVTEQGQTPLFL 117 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +LD + D NIGAI RSAV II R + + KS++GALE I R+++L Sbjct: 118 ILDGITDVRNIGAIARSAVCCGAQAIIIPDRGIAALNEEAIKSSAGALETISVCRVNSLL 177 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 A+ +H G + I +++ L + +A+I+G+E KG+ P + + ++ H+ M Sbjct: 178 KAIDTLHLNGIKVIASEMEAETKLYDCQLQEPVAVIMGSEDKGVFPALIKASDTLFHIPM 237 Query: 257 PGIIKALNVSNAAAVALYITQNHF 280 G ++ NVS AA + LY Sbjct: 238 AGNFESFNVSVAAGIILYEAMKQR 261 >gi|15838579|ref|NP_299267.1| tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c] gi|52783331|sp|Q9PC00|RLMB_XYLFA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|9107096|gb|AAF84787.1|AE004018_3 tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c] Length = 249 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 113/241 (46%), Gaps = 9/241 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ G++ V +++ N + + ++L KN+ + V+ V Q +D + G Sbjct: 7 WIVGINAVVSSIENDAEHVCEVLVEAGSKNSRLLDIEENARRKGIEVRRVTTQALDGVGG 66 Query: 107 KEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A A L D LL+VLD V DPHN+GA LRSA A Sbjct: 67 GVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAAAAGVT 126 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S +A + K++SGA + +P I + NL +L+++ GL +++ L Sbjct: 127 AVIIPKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLEGEAETSL 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 K+AL+LG E GLR T+E +A + MPG +++LNVS AA V L+ Sbjct: 187 YALDLRGKVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFEAVRQR 246 Query: 281 A 281 Sbjct: 247 T 247 >gi|302671185|ref|YP_003831145.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus B316] gi|302395658|gb|ADL34563.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316] Length = 249 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 97/240 (40%), Gaps = 10/240 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + G + V A + + + + +A + V + +D++ Sbjct: 9 IIEGRNAVLEAFRSGKTIDRLFILDGCKDGPVQTILREAKKHKDTVISFVKKERLDQLSE 68 Query: 107 KEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 +A + + D +++LD++ DPHN+GAI+R+A Sbjct: 69 TGKHQGVIAYGASYNYAEVDDILERAKQKGEDPFIIILDNIEDPHNLGAIIRTANLAGAH 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + S +A +AK+++GA+ + P +++N+ + ++ + G + Sbjct: 129 GVIIPKHRAASLTATVAKASAGAINYTPVAKVTNIANTIEDLKDKGLWFACA-DMGGTTM 187 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q I L++G EG G+ +E +A + M G I +LN S A V + Sbjct: 188 YQLNLKGPIGLVIGNEGSGVSRLVREKCDMIASIPMKGDIDSLNASVACGVLAFEVVRQR 247 >gi|90961787|ref|YP_535703.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118] gi|90820981|gb|ABD99620.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118] Length = 253 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 98/253 (38%), Gaps = 6/253 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K+ + N K + + L G+H V AL + L+ +K + Sbjct: 7 SNSRVKEWKKLNTK-KGRKKQNKYILDGLHLVKEALKANKKVEELLITSK---FEHLNEI 62 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 +P V + + I + QG+ + ++ ++LD V DP Sbjct: 63 EIPDETKVIMISEEVSKSISETQ-TPQGIFGIVSIEEEKITYPQKDVGAWLMLDGVQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIG ++R+A A G+I + + + + ++ G+ HI I + Sbjct: 122 NIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIKVINDNLSGWIRHFKDMK 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 ++ + ++ AL++G EG G+ + E + ++ + ++LNV Sbjct: 182 VPVFGSELNEHAREYTNGGQHTDFALVMGNEGNGMSKEILEMTSINLYIPIT-NAESLNV 240 Query: 266 SNAAAVALYITQN 278 + AA + ++ + Sbjct: 241 AVAAGILMFALKK 253 >gi|73541759|ref|YP_296279.1| RNA methyltransferase TrmH, group 3 [Ralstonia eutropha JMP134] gi|72119172|gb|AAZ61435.1| RNA methyltransferase TrmH, group 3 [Ralstonia eutropha JMP134] Length = 256 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 113/246 (45%), Gaps = 7/246 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPP 98 + + + L G H V+A L ++ + + + R D + V Sbjct: 8 NRAMAKQKLLIGFHAVTARLRQDAKGVTDVYVEASRRDRRMQDFIRLAESLGVRLHPVDA 67 Query: 99 QTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 + + + G + +A L LD + + LL+VLD V DPHN+GA LR A Sbjct: 68 ERLRGMAGTDRHQGVVARAEDVALALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVA 127 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 +I K S + +AK ASGA E +PYI ++NL L+++ G +G + Sbjct: 128 DGAGAHAVIAPKDRSVGLNTTVAKVASGAAETVPYITVTNLARTLRELQERGIWVVGTAD 187 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K L +A+++GAEG+G+R T+ET + + M G +++LNVS A+ V LY Sbjct: 188 GTDKTLYDVDLKGPMAIVMGAEGEGMRRLTRETCDELVGIPMLGGVESLNVSVASGVCLY 247 Query: 275 ITQNHF 280 Sbjct: 248 EAVRQR 253 >gi|313207250|ref|YP_004046427.1| RNA methyltransferase, trmh family, group 3 [Riemerella anatipestifer DSM 15868] gi|312446566|gb|ADQ82921.1| RNA methyltransferase, TrmH family, group 3 [Riemerella anatipestifer DSM 15868] Length = 258 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 99/249 (39%), Gaps = 12/249 (4%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 ++ + E+ ++G+ V A+ K+F + ++ H VP Sbjct: 10 KNNDKKEDF-IFGLRPVIEAIEAGKTIDKVFLQNGLQGSIYVELKALLAKHKIRPNYVPI 68 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAIL 151 + ++ HQG+ + + +++ + L++LD + D N GAI Sbjct: 69 EKLNHFT--RKNHQGVVAFISDIPFHSIEAVLPEIFEQGKTPFLVILDRLTDVRNFGAIC 126 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A D II ++ + ++ K+++GAL ++ + NL + + G Sbjct: 127 RTAECVGVDAIIIPEKGAAPINSDAIKTSAGALYNVKICKEKNLAHTVDFLQQSGVSVFS 186 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + ++K + AL++G E KG+ + + L + G ++LNVS A Sbjct: 187 ATEKAEKLIYDVDFKIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQSLNVSVACGA 246 Query: 272 ALYITQNHF 280 LY Sbjct: 247 ILYEVVRQR 255 >gi|240014154|ref|ZP_04721067.1| putative RNA methyltransferase [Neisseria gonorrhoeae DGI18] gi|240121716|ref|ZP_04734678.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID24-1] Length = 261 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 94/282 (33%), Gaps = 24/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + + + + Q L GVH + Sbjct: 1 MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L + + + + + + + +V + KI + + Sbjct: 43 LQSGRKPVGVYIPEAKMPSEEVLKLTAVLPEDGIFSVSDGILKKISS-LSCADDILTLID 101 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L TL + +L D V DP N+G +LRSA A ++ + + + S + ++ Sbjct: 102 IPLGGTLPDKGDCAVL---DGVQDPGNVGTVLRSAAAARVGTVVLGRGCADAWSPKVLRA 158 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 GA + I + + L + + L E + A + G EG G Sbjct: 159 GMGAHF-LLDIYSQADLEIWLAHYEDRVFATALREEKQAVLYGEDLCEPTAWVFGNEGAG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + A + M ++LNV+ AA + L+ A Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRA 259 >gi|24987276|pdb|1GZ0|A Chain A, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987277|pdb|1GZ0|B Chain B, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987278|pdb|1GZ0|C Chain C, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987279|pdb|1GZ0|D Chain D, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987280|pdb|1GZ0|E Chain E, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987281|pdb|1GZ0|F Chain F, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987282|pdb|1GZ0|G Chain G, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987283|pdb|1GZ0|H Chain H, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb Length = 253 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 8/247 (3%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQ 99 + +YG+H V A L + ++ K + A ++ Q Sbjct: 7 RGSHXSEXIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQ 66 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSA 154 +D+ +A D + L++LD V DPHN+GA LRSA Sbjct: 67 YLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSA 126 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A +I K S +A K A GA E +P IR++NL + + +G + Sbjct: 127 DAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTXRXLQEENIWIVGTAG 186 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L Q ++AL+ GAEG+G R T+E + + G + +LNVS A + L+ Sbjct: 187 EADHTLYQSKXTGRLALVXGAEGEGXRRLTREHCDELISIPXAGSVSSLNVSVATGICLF 246 Query: 275 ITQNHFA 281 + Sbjct: 247 EAVRQRS 253 >gi|86148225|ref|ZP_01066522.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222] gi|218708332|ref|YP_002415953.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio splendidus LGP32] gi|85833995|gb|EAQ52156.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222] gi|218321351|emb|CAV17301.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio splendidus LGP32] Length = 246 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 10/242 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKI 104 N F+YG+H V A L + + K ++ + + +D+ Sbjct: 3 NEFIYGIHAVKAVLEKDPARFIEAYVLKGRQDDRLLPLLNQLQQFGVSIQQMGRKPLDEK 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL + P LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-QGANHQGLIAKVKPAKQLNETHLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 DIYQAKLTGPLAVVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241 Query: 279 HF 280 Sbjct: 242 QR 243 >gi|152964880|ref|YP_001360664.1| RNA methyltransferase, TrmH family, group 3 [Kineococcus radiotolerans SRS30216] gi|151359397|gb|ABS02400.1| RNA methyltransferase, TrmH family, group 3 [Kineococcus radiotolerans SRS30216] Length = 321 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 64/256 (25%), Positives = 109/256 (42%), Gaps = 16/256 (6%) Query: 39 KSRHTSQP--ENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFP 92 + +P E ++ G +++ AL I + + + A P Sbjct: 68 RPPARRKPAGETEWIAGRNSIVEALRA-ELPITGIYVASRIETDERVKEILAAAGDKGIP 126 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPH 145 + Q +D+ + AVHQG+A P L++ LD V DP Sbjct: 127 LLEASRQDLDRHT-ENAVHQGVAATVPPYDYAHPMDLLDRAADSGRPALVVALDGVTDPR 185 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA++RS AF G++ +R + +A K+++GA P R +NL A+++ Sbjct: 186 NLGAVVRSVAAFGGHGVVVPERRAAGMTASAWKTSAGAAARTPVARATNLVRAIEEYQKA 245 Query: 206 GFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G +GL ++ L Q + + L++GAEG GL +E + + M G ++LN Sbjct: 246 GLFVVGLDAEGDVLLPQLKLADGPLVLVVGAEGAGLSRLVREKCDQVVSIPMAGAFESLN 305 Query: 265 VSNAAAVALYITQNHF 280 AA +ALY H Sbjct: 306 AGVAAGIALYEVARHR 321 >gi|260578386|ref|ZP_05846300.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium ATCC 43734] gi|258603408|gb|EEW16671.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium ATCC 43734] Length = 318 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 61/271 (22%), Positives = 115/271 (42%), Gaps = 19/271 (7%) Query: 27 HRDYKKMQSFNQKSRH------TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 H YK+ Q+ +++ + + G + V L+ L + Sbjct: 46 HAAYKRKQAAKRRASGAHDRFAKDDNQVELVVGRNPVIECLHA-KVPATALYVAEGTKND 104 Query: 81 LDWDAN----LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------V 129 V V +D++ G +HQG+ L+ P ++ Sbjct: 105 ERLAEAVHTCADRGISVLEVSRAELDRMTG-NGMHQGIGLQIPPYQYTQVEDLIQQAASA 163 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 L++ LD++ DP N+GA++RS AF G+I +R S S +AV ++++G +P Sbjct: 164 PQPGLVVALDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLPV 223 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + +N+ +L+++ G+Q +GL + L+ +++G+EGKGL ET Sbjct: 224 AKATNMVRSLKQLQQAGYQVVGLDAGGDHTLDTYDGTTPTVIVVGSEGKGLSRLVSETCD 283 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + M +++LN S AA V L Sbjct: 284 TIMSIPMAKWVESLNASVAAGVVLSEFARQR 314 >gi|296314260|ref|ZP_06864201.1| RNA methyltransferase, TrmH family [Neisseria polysaccharea ATCC 43768] gi|296839057|gb|EFH22995.1| RNA methyltransferase, TrmH family [Neisseria polysaccharea ATCC 43768] Length = 261 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 52/282 (18%), Positives = 93/282 (32%), Gaps = 24/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + + + + Q L GVH + Sbjct: 1 MKQISSPNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L + + + + + + + +V + KI + + Sbjct: 43 LQSGRKPVGVYIPEAKMPSEEVRKLTAVLPEDRIFSVSDGILKKISS-LSCADDILALID 101 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L TL + +VLD V DP N+G +LRSA A ++ + + S + ++ Sbjct: 102 IPLGGTLPDKGDC---VVLDSVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRA 158 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 GA + I + + L + + L E A + G EG G Sbjct: 159 GMGAHF-LLDIYPQADLEIWLARYEDRVFATALREEKQTVLYGEDLCKPTAWVFGNEGAG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + A + M ++LNV+ AA V L+ A Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATVCLFEQMRQRA 259 >gi|254504591|ref|ZP_05116742.1| RNA methyltransferase, TrmH family, group 3 [Labrenzia alexandrii DFL-11] gi|222440662|gb|EEE47341.1| RNA methyltransferase, TrmH family, group 3 [Labrenzia alexandrii DFL-11] Length = 275 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 107/264 (40%), Positives = 154/264 (58%), Gaps = 1/264 (0%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 K + R K + + LYG+HTV AA N RK +L AT Sbjct: 9 WKTQRHGSGNAQGRFSKTKGKPGPRRPGLPPEGPVLLYGLHTVEAAFANKDRKRLKLYAT 68 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134 +NA RL + + PV+ P+ +D++V K+AVHQG+ LE PL + + ++ ++L Sbjct: 69 ENAKNRL-QERGVVIDVPVEDKRPKELDRMVTKDAVHQGMILEADPLPAYGAEHLKGARL 127 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ LD V DPHN+GAILRSAVA D ++TT+R++P E VLAKSASGAL+ I ++R+ N Sbjct: 128 ILALDQVTDPHNVGAILRSAVALDADAVVTTERHAPEEGPVLAKSASGALDMIKHVRVKN 187 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + +M GF I L SD LE DK L+LG+EGKG+R +E +A L Sbjct: 188 MARFITEMKEQGFGCIALDSDGHASLEDTDFTDKTVLVLGSEGKGVRQGVREACGLLARL 247 Query: 255 HMPGIIKALNVSNAAAVALYITQN 278 MPG I++LNVSNAA ++LY+ + Sbjct: 248 DMPGEIRSLNVSNAAVLSLYVARQ 271 >gi|199597200|ref|ZP_03210632.1| rRNA methylase [Lactobacillus rhamnosus HN001] gi|199592004|gb|EDZ00079.1| rRNA methylase [Lactobacillus rhamnosus HN001] Length = 253 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 100/276 (36%), Gaps = 26/276 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS K+++I + K +H L G H V A Sbjct: 1 MEYISSPKNDRIKTAKKLTVK-------------------KHQKDAGRYLLEGRHLVQEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + + AT+ +D A P + + + + E QG+ Sbjct: 42 LASRQTP-YDIYATEKY---VDDRALKPFYDKITQISESVSEHLSDTE-TPQGIFAVMPR 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + LL+ D + DP N+G ++R+A A +I + + + ++ Sbjct: 97 QAGQLPDPLSGQFLLL--DAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLRAM 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+ + + + +D K + + L++G EG G+ Sbjct: 155 QGSQFHVRIVSAKLMPVIKALQRAGIPVYGSELNDKAKSYRSIQPSAQFGLVVGNEGNGM 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P + + ++ + G ++LNV+ AAA+ ++ Sbjct: 215 DPVLLKQTDTNLYIPIRGQAESLNVAVAAAIMMFHL 250 >gi|91977697|ref|YP_570356.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris BisB5] gi|91684153|gb|ABE40455.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris BisB5] Length = 273 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 114/235 (48%), Positives = 154/235 (65%), Gaps = 1/235 (0%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 +R LYG HTV+AAL NP R+I +L T+NA +L D N+ + V P Sbjct: 30 ARERDPDGPAILYGWHTVTAALANPERRIRKLWLTENAARKLA-DENIDTKVTPEIVRPG 88 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 ID+ +G +AVHQG+ E PL SP +D + +++VLD + DPHN+GAILRSA AF+ Sbjct: 89 EIDQRLGPDAVHQGMLAEADPLDSPRIDTLPQDGIVLVLDQITDPHNVGAILRSAAAFAV 148 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 I+TT R+SP + VLAKSASGALE +P + + NL+ AL +++ GF T+GL S+ Sbjct: 149 KAIVTTARHSPEATGVLAKSASGALELVPLVLVGNLSRALAELNDRGFLTVGLDSEGSAD 208 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L ++ +AL+LGAEGKGLR T+ET +A L MPG IK+LNVSNAAA+ALY Sbjct: 209 LAAVELHEPLALVLGAEGKGLRQLTRETCNVVARLDMPGAIKSLNVSNAAALALY 263 >gi|30260282|ref|NP_842659.1| RNA methyltransferase [Bacillus anthracis str. Ames] gi|42779172|ref|NP_976419.1| RNA methyltransferase [Bacillus cereus ATCC 10987] gi|47525346|ref|YP_016695.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor'] gi|47569826|ref|ZP_00240496.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9241] gi|49183125|ref|YP_026377.1| RNA methyltransferase [Bacillus anthracis str. Sterne] gi|49476710|ref|YP_034444.1| tRNA/rRNA methyltransferase SpoU [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145126|ref|YP_081703.1| TrmH family tRNA methyltransferase [Bacillus cereus E33L] gi|65317552|ref|ZP_00390511.1| COG0566: rRNA methylases [Bacillus anthracis str. A2012] gi|118475862|ref|YP_893013.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|165873145|ref|ZP_02217761.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0488] gi|167635112|ref|ZP_02393429.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0442] gi|167641947|ref|ZP_02400182.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0193] gi|170689565|ref|ZP_02880751.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0465] gi|170707589|ref|ZP_02898042.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0389] gi|177655588|ref|ZP_02936969.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0174] gi|190568999|ref|ZP_03021900.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis Tsiankovskii-I] gi|196036983|ref|ZP_03104350.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus W] gi|217957667|ref|YP_002336211.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH187] gi|218901294|ref|YP_002449128.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH820] gi|222093862|ref|YP_002527912.1| tRNA/rRNA methyltransferase (spou); trmh family [Bacillus cereus Q1] gi|225862144|ref|YP_002747522.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus 03BB102] gi|227812765|ref|YP_002812774.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. CDC 684] gi|229604658|ref|YP_002864743.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0248] gi|254684405|ref|ZP_05148265.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. CNEVA-9066] gi|254724232|ref|ZP_05186017.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A1055] gi|254733754|ref|ZP_05191469.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Western North America USA6153] gi|254744606|ref|ZP_05202285.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Kruger B] gi|254756310|ref|ZP_05208339.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Vollum] gi|254758388|ref|ZP_05210415.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Australia 94] gi|301051829|ref|YP_003790040.1| tRNA/rRNA methyltransferase [Bacillus anthracis CI] gi|30253603|gb|AAP24145.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Ames] gi|42735087|gb|AAS39027.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus ATCC 10987] gi|47500494|gb|AAT29170.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. 'Ames Ancestor'] gi|47553519|gb|EAL11900.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9241] gi|49177052|gb|AAT52428.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Sterne] gi|49328266|gb|AAT58912.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978595|gb|AAU20145.1| tRNA/rRNA SpoU-like methyltransferase; probable TrmH family [Bacillus cereus E33L] gi|118415087|gb|ABK83506.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|164711125|gb|EDR16686.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0488] gi|167510078|gb|EDR85489.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0193] gi|167529586|gb|EDR92336.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0442] gi|170127585|gb|EDS96459.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0389] gi|170666478|gb|EDT17255.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0465] gi|172080052|gb|EDT65150.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0174] gi|190559923|gb|EDV13907.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis Tsiankovskii-I] gi|195990406|gb|EDX54407.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus W] gi|217065144|gb|ACJ79394.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH187] gi|218539078|gb|ACK91476.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH820] gi|221237910|gb|ACM10620.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus cereus Q1] gi|225787673|gb|ACO27890.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus 03BB102] gi|227007212|gb|ACP16955.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. CDC 684] gi|229269066|gb|ACQ50703.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0248] gi|300373998|gb|ADK02902.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus cereus biovar anthracis str. CI] gi|324324081|gb|ADY19341.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 247 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 63/245 (25%), Positives = 116/245 (47%), Gaps = 13/245 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ G + V AL + R I ++ + A ++ + ++ P + +D++ Sbjct: 3 SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKIILQHAPKKKLDQL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E HQG+ + A L+ ++LD + DPHN+G+I+R+A A Sbjct: 62 V--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G G + K Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 I L++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 180 TDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239 Query: 278 NHFAK 282 + Sbjct: 240 RKRNE 244 >gi|170730155|ref|YP_001775588.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12] gi|167964948|gb|ACA11958.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12] Length = 249 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 113/241 (46%), Gaps = 9/241 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ G++ V +++ N + + ++L KN+ + V+ V Q +D + G Sbjct: 7 WIVGINAVVSSIENDAEHVREVLVEAASKNSRLLDIEENARRKGIEVRRVTTQALDGVGG 66 Query: 107 KEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A A L D LL+VLD V DPHN+GA LRSA A Sbjct: 67 GVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAAAAGVT 126 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I +K S +A + K++SGA + +P I + NL +L+++ GL+ + + L Sbjct: 127 AVIISKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLAGEVETSL 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +AL+LG E GLR T+E +A + MPG +++LNVS AA V L+ Sbjct: 187 YALDLRGNVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFEAVRQR 246 Query: 281 A 281 Sbjct: 247 T 247 >gi|322387093|ref|ZP_08060704.1| SpoU rRNA methylase [Streptococcus infantis ATCC 700779] gi|321142080|gb|EFX37574.1| SpoU rRNA methylase [Streptococcus infantis ATCC 700779] Length = 246 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 56/276 (20%), Positives = 107/276 (38%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + + G H A Sbjct: 1 MTIITSKANSVVKNTKKLHQKKYRKS---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + KI ++ A +L +P + I + QG+ Sbjct: 40 VQAGA-KIEKIFALVEYGDKLV-------DYPQTVFVAEEILLDLADSQTPQGIVAIVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEEQLPDLSQGKYLFL--EDVQDPGNVGTIIRTADAAGFSGVIVSSKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+ T + + S + K + + + AL++G EG+G+ Sbjct: 150 QGSHFHLPIYRMPVETFVEEAKKNHLPILATTLSQNSKDYRELDRLEDFALVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P + A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPFMTDQADQLVHISMKGQAESLNVAIAAGILMFYL 245 >gi|298243921|ref|ZP_06967728.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM 44963] gi|297556975|gb|EFH90839.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM 44963] Length = 278 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 51/294 (17%), Positives = 102/294 (34%), Gaps = 33/294 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M LIS + ++ L+ H +R + L G H + A Sbjct: 1 MTLISSTANPRVSKLQRLHT-------------------TRGRKKSGQCLLEGPHLLLAL 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFP--------VKTVPPQTIDKIVGKEAVHQ 112 L+ + ++ + R L + V + ++ I + Sbjct: 42 LDAGMVPL-EVYYQPEVMQRQAETRLLLERVKNAELGEQQLFEVSERVMEAISDVQTSQG 100 Query: 113 GLALETAPLLSPTLDAVRN----SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 + + R L++LD + DP N+G I+R+A+A + ++ T Sbjct: 101 IVCVMDLAAFEAAAVTRRRAPASRPALLILDDLADPGNMGTIMRTALAADVERVLLTPNC 160 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKND 227 ++ + +SA+GA +P N + +++ + + + + S Sbjct: 161 VDCFNSKVIRSAAGAHLFLPVESNINWDEIQERVRAHCQERVLMAEAHSPNVYFDLDLVA 220 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ALI+G E G + AT + I++LN + AA + LY + Sbjct: 221 PFALIIGNEAHGPSQSARALATIPVAIPQAAGIESLNAAMAAGILLYEAVRQRS 274 >gi|134296013|ref|YP_001119748.1| tRNA/rRNA methyltransferase SpoU [Burkholderia vietnamiensis G4] gi|134139170|gb|ABO54913.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia vietnamiensis G4] Length = 260 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 55/261 (21%), Positives = 106/261 (40%), Gaps = 8/261 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ YK++++ + + + L G H A L+ + + AT+ ALA + Sbjct: 6 SRDNPLYKRLKALAGSTAQQRRGGHALLEGFHLAGAYLDTGAIPELCV-ATEGALAHAEA 64 Query: 84 DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A + + V P + + GL L P V ++ +++ D V Sbjct: 65 QAIVARIDAPRVVTLPDALFGQLSNVVSGVGLLLLVERPAQPLPARVTDTSVVL--DGVQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA A + + + S+ + +S GA + +++ Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDALAERL 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 T + + + + +A + G EG G+ ++ AT + PG +++ Sbjct: 183 DVPVALTDSHGAQAVYDCD---LSGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239 Query: 263 LNVSNAAAVALYI-TQNHFAK 282 LNV+ AAAV L+ + K Sbjct: 240 LNVAAAAAVCLFEQVRQQRRK 260 >gi|225848046|ref|YP_002728209.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium azorense Az-Fu1] gi|225643892|gb|ACN98942.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium azorense Az-Fu1] Length = 247 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 5/241 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + E L ++G + V AL + L+A + + V+ VP Q + Sbjct: 2 KEEKGEKLVIWGRNPVIEALRSGKSLEKILVAHDSHPPKDLLKLAEERKVKVQKVPRQKV 61 Query: 102 DKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 +++ G + + ++ ++ +L+VLDH+ DP N+G+I+R+A Sbjct: 62 EELAGTKKTQGVVALLSPIQYWNEDKIIDKVIKEKGILLVLDHITDPQNVGSIMRTAEIL 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII K S + V+ K+++GA+ ++P ++ +L + + Sbjct: 122 GVSGIILPKERSSPINEVVVKASTGAVFYLPIAKVGSL-RNTLEKFKKKGGWVVAVEKGG 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K + + +AL++G+EGKG+ E A +A + M G I + NVSNA A+AL+ Sbjct: 181 KNIHEIDFPFPLALVVGSEGKGVSKSVLEEADIVASIPMKGKITSFNVSNATAIALWEVF 240 Query: 278 N 278 Sbjct: 241 K 241 >gi|196047744|ref|ZP_03114943.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus 03BB108] gi|196021422|gb|EDX60130.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus 03BB108] Length = 247 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 63/245 (25%), Positives = 116/245 (47%), Gaps = 13/245 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ G + V AL + R I ++ + A ++ + ++ P + +D++ Sbjct: 3 SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKIILQHAPKKKLDQL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E HQG+ + A L+ ++LD + DPHN+G+I+R+A A Sbjct: 62 V--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G G + K Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKGRGLWIAGTDAKGK 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 I L++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 180 TDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239 Query: 278 NHFAK 282 + Sbjct: 240 RKRNE 244 >gi|296128533|ref|YP_003635783.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas flavigena DSM 20109] gi|296020348|gb|ADG73584.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas flavigena DSM 20109] Length = 333 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 68/267 (25%), Positives = 114/267 (42%), Gaps = 14/267 (5%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLD 82 + + K + + + G ++V AL + + + R Sbjct: 68 RPSARAARGAEGKRGGRTSSTHEVVAGRNSVLEALRAGI-PVSTVYLAARLEADDRTREI 126 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLL 135 P+ V +D++ AVHQG+AL+ P D + L+ Sbjct: 127 VSIAADAGHPLLEVGRAELDRLTD-GAVHQGVALQVPPYEYLDPDDLLDTAESSQTVPLV 185 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + LD + DP N+GA+LRSA AF G++ +R + +A K ++GA +P R +NL Sbjct: 186 VALDGITDPRNLGAVLRSAGAFGAHGVLVPERRAAGVTASAWKVSAGAAARVPVARATNL 245 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254 T ALQ G +GL + PL D + L++G+EGKGL +E ++ + Sbjct: 246 TRALQDYRRAGVFVVGLDAGGDVPLADLPFAADPLVLVVGSEGKGLSRLVREQCDAIVSI 305 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 + +++LN AA +ALY A Sbjct: 306 PIASAVESLNAGVAAGIALYEVARQRA 332 >gi|309389091|gb|ADO76971.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium praevalens DSM 2228] Length = 269 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 58/286 (20%), Positives = 113/286 (39%), Gaps = 24/286 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+IS +++KI L + +SR+ + L G + AA Sbjct: 1 MNIISSSQNDKIKYLNKLY-------------------RSRNRRKEGVFILEGKRLIEAA 41 Query: 61 LN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L +++F A + A A L + + + + + QG+ Sbjct: 42 LAGGADFKQVFLTPAFFKSAANEKLLAALKLEADLIYLEEKLLKE-TASTVNPQGILAVV 100 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + D + +++LD + DP N+G I+R+AVA DGII K + + + Sbjct: 101 EESVFKGQDFYNKADKILLLDRIQDPGNMGTIIRTAVAAGFDGIIALKGSVDIYNQKVIR 160 Query: 179 SASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 S G + I + + + K + + + ++++ + K+ L++G E Sbjct: 161 STMGGIFSIAIRQKLSQQEFLVELKEKALDHELLAADIEAEEYHFEHQYQSKLILMIGNE 220 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 GL P+ A + + + G I++LN + AA+V + K Sbjct: 221 ANGLDPQLLTKAKTKIKIPLAGEIESLNAAVAASVIAFEILAQALK 266 >gi|229552522|ref|ZP_04441247.1| SpoU family rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|258539895|ref|YP_003174394.1| rRNA methyltransferase [Lactobacillus rhamnosus Lc 705] gi|229314074|gb|EEN80047.1| SpoU family rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|257151571|emb|CAR90543.1| rRNA methyltransferase [Lactobacillus rhamnosus Lc 705] Length = 253 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 95/276 (34%), Gaps = 26/276 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS K+++I + K +H L G H V A Sbjct: 1 MEYISSPKNDRIKTAKKLTVK-------------------KHQKDAGRYLLEGRHLVQEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + + AT+ + + + + QG+ Sbjct: 42 LASGQTP-YDIYATEKYVDDRALKPFYDKMTQISESVSEHL----SDTETPQGIFAVMPR 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L++ D + DP N+G ++R+A A +I + + + ++ Sbjct: 97 QAGQLPDPLSGQFLML--DAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLRAM 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+ + + + +D K + + L++G EG G+ Sbjct: 155 QGSQFHVRIVSAKLMPVIKALQRAGIPVYGSELNDKAKSYRSIQPSAQFGLVVGNEGNGM 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P + + ++ + G ++LNV+ AAA+ ++ Sbjct: 215 DPVLLKQTDTNLYIPIRGQAESLNVAVAAAIMMFHL 250 >gi|170698709|ref|ZP_02889775.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria IOP40-10] gi|171317519|ref|ZP_02906709.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria MEX-5] gi|170136413|gb|EDT04675.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria IOP40-10] gi|171097348|gb|EDT42193.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria MEX-5] Length = 247 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 117/239 (48%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + + + ++L + R D A + + + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + S LD ++ LL+VLD V DPHN+GA LR A + Sbjct: 66 TER-HQGVVARVEDVPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWVIGTSDDASATLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A+++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 DTKLDGPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|15644487|ref|NP_229539.1| hypothetical protein TM1741 [Thermotoga maritima MSB8] gi|4982318|gb|AAD36806.1|AE001812_16 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 242 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 8/236 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107 +YG + AL N + + + G Sbjct: 3 VYGRKILEEALRNNVPIKKVFFQKMKNPGSYFLSLVKEVEKRGIKYSFESEERLKNLSGT 62 Query: 108 EAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + HQG+ + +++ + + L+++LD + DPHN+GAI+R++V +GII Sbjct: 63 KK-HQGVVFDIGEYRYSSVEEILEAKTPPLIVLLDQIQDPHNLGAIVRTSVGAGANGIII 121 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 K S + + K ++G + ++NL ++++ G S P+ +E Sbjct: 122 PKDKSVKVTETVVKVSAGTVFRARIAVVTNLARTIEELKEKGVW-TYASDIDGTPIYEED 180 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + G EG+G+R +E + + M I +LNVS + V L+ Sbjct: 181 FTFPTAFVFGNEGEGIRRLVREKCDRVVTIPMENDIDSLNVSVSVGVVLFEAVRQR 236 >gi|282896448|ref|ZP_06304469.1| RNA methyltransferase TrmH, group 3 [Raphidiopsis brookii D9] gi|281198736|gb|EFA73616.1| RNA methyltransferase TrmH, group 3 [Raphidiopsis brookii D9] Length = 324 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 122/250 (48%), Gaps = 12/250 (4%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTV 96 +++ + +N +YG + V +AL + R + +L + + + V Sbjct: 59 KNSEEQDNDLIYGRYPVLSALES-HRNLNRLWITSRLRYDPRFHHLVLQAKDNGTVIDEV 117 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAI 150 P+ +D+I A HQG+A + AP L+ + +++V D + DPHN+GAI Sbjct: 118 DPKRLDQIT-NGANHQGVAAQIAPYTYTELEDLISQAQTVSEPVIVVADGITDPHNLGAI 176 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A A G++ +R + ++ + K A+GALE+ R+ NL+ AL+++ GF Sbjct: 177 IRTAEAIGAQGLVIPQRRAVGITSTVVKVAAGALENFSVARVVNLSRALEQLKESGFWIY 236 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G ++ +PL L++G+EG+GL TQ++ + + + G +LN S A Sbjct: 237 GTAATGSEPLHSVRFTGSTVLVVGSEGEGLSMLTQKSCDVLVSIPLQGKTPSLNASVATG 296 Query: 271 VALYITQNHF 280 +ALY Sbjct: 297 MALYEIYRQR 306 >gi|331003584|ref|ZP_08327081.1| RNA methyltransferase [Lachnospiraceae oral taxon 107 str. F0167] gi|330412425|gb|EGG91816.1| RNA methyltransferase [Lachnospiraceae oral taxon 107 str. F0167] Length = 251 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 13/241 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G + V A + + +L K+ H V V +D + + Sbjct: 6 IEGRNVVIEAFR-GGKTVDKLYLQDGLKDYTISTILREAKKHGTYVNFVSKDRLDTMS-E 63 Query: 108 EAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ A +++ + +LD + DPHN+GAI+R+A Sbjct: 64 TGKHQGVIAIVAAYEYASVEDILEKARQKNEPPFIFILDGIEDPHNLGAIIRTANLSGAH 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + +A +A++++GA+ + P +++N+ +Q++ G + + + Sbjct: 124 GVIIPKHRAVGLTAAVARASAGAINYTPVAKVTNINKTMQELKDAGMWFVCA-DMGGEKM 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L++G EG G+ ++ +A + M G I +LN S A V Y Sbjct: 183 YNIDLTGSIGLVIGNEGDGVSESVKKNCDFIASIPMNGDIDSLNASVACGVLAYEIVRQR 242 Query: 281 A 281 Sbjct: 243 I 243 >gi|15615674|ref|NP_243978.1| rRNA methylase [Bacillus halodurans C-125] gi|10175734|dbj|BAB06831.1| rRNA methylase [Bacillus halodurans C-125] Length = 251 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 98/277 (35%), Gaps = 27/277 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+E + K + Q + G H V A Sbjct: 1 MKQIDSPKNELV-------------------KKWKKLHTKKGRDQSGQFLIEGYHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + I +L T++ W + V V + + + + Sbjct: 42 LKSTIT-IETILVTESVTLPTAWHVDER---DVILVSDRVMADLTETKTPQGIA---AIC 94 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + +DHV DP N+G ++R+ A +I ++ ++ + +++ Sbjct: 95 HIPDEPSFQELEGMFLCIDHVQDPGNVGTMIRTCDAAGMSAVIVSEGSVDIYNSKVVRAS 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P I+ Q + E + AL++G EG+G+ Sbjct: 155 QGSIFHLPVIKGDLHGWVDQFKEAGIPVFGTALEGGSTYTAIE-PQARFALLVGNEGEGV 213 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P+ + A ++ + G ++LNV+ A + LY + Sbjct: 214 EPELLDKADQNLYIPLYGKAESLNVAVATGILLYYLR 250 >gi|310643902|ref|YP_003948660.1| tRNA/rRNA methyltransferase (spou) [Paenibacillus polymyxa SC2] gi|309248852|gb|ADO58419.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus polymyxa SC2] Length = 262 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 59/260 (22%), Positives = 100/260 (38%), Gaps = 4/260 (1%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARL 81 + N+ K+ +K +H ++ + G+H V AL + + K A L Sbjct: 4 ISPNNARVKEWSQLLEK-KHRTRQHKYIVEGIHLVQEALRSNAAVESVAYDLDKGIPAEL 62 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLLMVLDH 140 + + P V I K + A+ + + L+MVLD Sbjct: 63 NGLDSADQPVEWIPVSAAVIAKCTDTKTPQSVFAIVRKEERSAFAALLEQPDALVMVLDG 122 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+RSA A G+I + + +S G+L H+P I S + L Sbjct: 123 VQDPGNVGTIIRSADAAGAAGVILGHGCADLYNPKTIRSTMGSLFHLPVIEGSLE-ELLP 181 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + S G + + S D+ L++G EG+G+ T + M G Sbjct: 182 QAKSKGARLLSTSLDASLSCYTIDLRVSTWLVIGNEGQGISAATASMVDESVFIPMQGQA 241 Query: 261 KALNVSNAAAVALYITQNHF 280 ++LN + A+ V L+ Sbjct: 242 ESLNAAMASTVLLFEAMRQR 261 >gi|285018766|ref|YP_003376477.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73] gi|283473984|emb|CBA16485.1| probable trna/rrna methyltransferase protein [Xanthomonas albilineans] Length = 248 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 115/240 (47%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ GV+ V++++ N + + ++L KN + + V+ V Q +D + G Sbjct: 7 WIVGVNAVASSIENDADNVREVLVEAGSKNPRLQEIEENARRKGIEVRRVNTQALDGVGG 66 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A A + + LL+VLD V DPHN+GA LRSA A Sbjct: 67 SVRHQGVAARYAAARTWAESELEGLVAAAQGRALLLVLDGVQDPHNLGACLRSAAAAGVT 126 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S +A + K+++GA + +P + ++NL L+++ G GL+ +++ L Sbjct: 127 AVVIPKDKSAPVNATVRKTSAGAADRLPIVAVTNLARCLRELQKQGVWIYGLAGEAETSL 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL+LG E GLR T+E + + MPG I++LNVS AA V L+ Sbjct: 187 YAQDLRGNVALVLGGESDGLRRLTREHCDGLVRIPMPGEIESLNVSVAAGVTLFEAVRQR 246 >gi|206560438|ref|YP_002231202.1| putative RNA methylase protein [Burkholderia cenocepacia J2315] gi|198036479|emb|CAR52376.1| putative RNA methylase protein [Burkholderia cenocepacia J2315] Length = 260 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 100/257 (38%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ YK++++ + + L G H SA L+ + + T+ AL + Sbjct: 6 SRDNPLYKRLKALAGSTPQQRRSGQALLEGFHLASAYLDTGATPELCV-TTEGALGHAEA 64 Query: 84 DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A + + V P + + G L P V + +++ D V Sbjct: 65 QAIVARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPAHPLPARVTETSVVL--DGVQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA A + + + S+ + +S GA + + + ++ Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVDAGELSGRL 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 T + + + + +A + G EG G+ + AT + PG +++ Sbjct: 183 AVPIALTDSHGAQAVYDCD---LSAPVAWVFGNEGAGVSAFWCDAATHRVTIPQPGGMES 239 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ AAAV L+ Sbjct: 240 LNVAAAAAVCLFEQVRQ 256 >gi|71275861|ref|ZP_00652145.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Dixon] gi|71899357|ref|ZP_00681517.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1] gi|71163439|gb|EAO13157.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Dixon] gi|71730871|gb|EAO32942.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1] Length = 249 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 9/241 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ G++ V +++ N + + ++L KN+ + V+ V Q +D + G Sbjct: 7 WIVGINAVVSSIENDAEHVREVLLEAASKNSRLLDIEENARRKGIEVRRVTTQALDGVGG 66 Query: 107 KEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 A A L D LL+VLD V DPHN+GA LRSA A Sbjct: 67 GVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAAAAGVT 126 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S +A + K++SGA + +P I + NL +L+++ GL+ + + L Sbjct: 127 AVIIPKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLAGEVETSL 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +AL+LG E GLR T+E +A + MPG +++LNVS AA V L+ Sbjct: 187 YALDLRGNVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFEAVRQR 246 Query: 281 A 281 Sbjct: 247 T 247 >gi|329936175|ref|ZP_08285968.1| RNA methyltransferase [Streptomyces griseoaurantiacus M045] gi|329304285|gb|EGG48165.1| RNA methyltransferase [Streptomyces griseoaurantiacus M045] Length = 313 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 112/280 (40%), Gaps = 17/280 (6%) Query: 18 SHYAKLRRNHRDYK-KMQSFNQKSRHTSQPEN---LFLYGVHTVSAALNNP---SRKIFQ 70 + K + +R + + ++ + + G + V AL + Q Sbjct: 35 AEMRKGHKKNRLATSRAKQATRRPAPRGRGGRSTSELVVGRNPVVEALREGVPANTLYVQ 94 Query: 71 LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128 + R + P +D++ HQGL L+ P + Sbjct: 95 QFIDNDERVREALQLAAERGGINLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDL 153 Query: 129 ------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L++ LD V DP N+GA++RS AF G++ +R + +A K+++G Sbjct: 154 VSAAHDAGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 213 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLR 241 P R +NLT AL+ G +GL++D + + + + +++G+EGKGL Sbjct: 214 TAARTPVARATNLTRALEAYKKAGITVVGLAADGEAAVGDLKALDGPVVIVVGSEGKGLS 273 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + MPG ++LN AA + LY T A Sbjct: 274 RLVGETCDVRVRIPMPGGAESLNAGVAAGIVLYETARRRA 313 >gi|59801230|ref|YP_207942.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA 1090] gi|194098554|ref|YP_002001616.1| putative RNA methyltransferase [Neisseria gonorrhoeae NCCP11945] gi|240115611|ref|ZP_04729673.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|260440578|ref|ZP_05794394.1| putative RNA methyltransferase [Neisseria gonorrhoeae DGI2] gi|268601289|ref|ZP_06135456.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|291043881|ref|ZP_06569597.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293399091|ref|ZP_06643256.1| TrmH family RNA methyltransferase [Neisseria gonorrhoeae F62] gi|59718125|gb|AAW89530.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA 1090] gi|193933844|gb|ACF29668.1| putative RNA methyltransferase [Neisseria gonorrhoeae NCCP11945] gi|268585420|gb|EEZ50096.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|291012344|gb|EFE04333.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291610505|gb|EFF39615.1| TrmH family RNA methyltransferase [Neisseria gonorrhoeae F62] Length = 261 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 94/282 (33%), Gaps = 24/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + + + + Q L GVH + Sbjct: 1 MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L + + + + + + + +V + KI + + Sbjct: 43 LQSGRKPVGVYIPEAKMPSEEVLKLTAVLPEDGIFSVSDGILKKISS-LSCADDILTLID 101 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L TL + +L D V DP N+G +LRSA A ++ + + + S + ++ Sbjct: 102 IPLGGTLPDKGDCAVL---DGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRA 158 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 GA + I + + L + + L E + A + G EG G Sbjct: 159 GMGAHF-LLDIYSQADLEIWLAHYEDRVFATALREEKQAVLYGEDLCEPTAWVFGNEGAG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + A + M ++LNV+ AA + L+ A Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRA 259 >gi|330991641|ref|ZP_08315592.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1] gi|329761660|gb|EGG78153.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1] Length = 263 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 102/237 (43%), Positives = 133/237 (56%), Gaps = 5/237 (2%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV--PPQTIDKI 104 +LYG H V AAL NP+RK+ QLL T A L L FP++ V +D + Sbjct: 29 GTCWLYGQHAVQAALENPARKLRQLLVTAEAQETLAS--RLEGGFPIQPVRTERAALDTL 86 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 G +AVHQG+AL L P LD V ++VLD V DP NIGAILRSA AF ++ Sbjct: 87 CGPDAVHQGMALLVDVLAQPDLDTVLEQPGPVLVLDQVTDPRNIGAILRSAAAFGAVAVV 146 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 R +P E+ LA++ASGALE +P IR+ NL+ L + S G +GL + Sbjct: 147 MQDRNAPEETGTLARAASGALEIVPLIRVVNLSRVLDALKSRGLWVVGLDAGGGVLDGAA 206 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++AL+LGAEG GLR T+E +A L M +++LNVSNAAAVALY H Sbjct: 207 FHQRRVALVLGAEGAGLRRLTREHCDEIAGLAMSSRMESLNVSNAAAVALYEMFRHR 263 >gi|260887113|ref|ZP_05898376.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC 35185] gi|260863175|gb|EEX77675.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC 35185] Length = 290 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 107/281 (38%), Gaps = 23/281 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++++I + + +R + + GV V A Sbjct: 18 MEKIESAQNKRIKWIASL-------------------KNARRRREEGVVVAEGVRLVEMA 58 Query: 61 LNNPSRKIFQLL-ATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALE 117 F L+ A R + P+ V P+ K +A L + Sbjct: 59 AEAGWTTRFCLVTAEAAREERAERILARLESLGCPLAEVTPEVYMKASDTDAPQGILLVL 118 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 S A+R ++VLD V DP N G I+R+A A D ++ SA Sbjct: 119 EERGASLAALAMRQEMHVVVLDGVQDPGNAGTIVRTADAAGADAVVCLADTIDVFSAKAV 178 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAE 236 +++ G++ H+P +R + T + + + + D +P + ++AL G E Sbjct: 179 RASMGSVFHVPVVRNVSRTALCEFLQQGRVRLLAADLDEAAQPYYAADYSGRLALAFGNE 238 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 G G+ + + A + + M G ++LNV+ AAA+ LY Sbjct: 239 GNGVSDEVRRMAEAKLFIPMFGKAESLNVATAAALVLYEAA 279 >gi|330839114|ref|YP_004413694.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC 35185] gi|329746878|gb|AEC00235.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC 35185] Length = 273 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 59/281 (20%), Positives = 106/281 (37%), Gaps = 23/281 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++++I + + +R + + GV V A Sbjct: 1 MEKIESAQNKRIKWIASL-------------------KNARRRREEGVVVAEGVRLVEMA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 F L+ + A P+ V P+ K +A L + Sbjct: 42 AEAGWTTRFCLVTAEAAREERAERILARLESLGCPLAEVTPEVYMKASDTDAPQGILLVL 101 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 S A+R ++VLD V DP N G I+R+A A D ++ SA Sbjct: 102 EERGASLAALAMRQEMHVVVLDGVQDPGNAGTIVRTADAAGADAVVCLADTIDVFSAKAV 161 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAE 236 +++ G++ H+P +R + T + + + + D +P + ++AL G E Sbjct: 162 RASMGSVFHVPVVRNVSRTALCEFLQQGRVRLLAADLDEAAQPYYAADYSGRLALAFGNE 221 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 G G+ + + A + + M G ++LNV+ AAA+ LY Sbjct: 222 GNGVSDEVRRMAEAKLFIPMFGKAESLNVATAAALVLYEAA 262 >gi|225867831|ref|YP_002743779.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. zooepidemicus] gi|225701107|emb|CAW97954.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. zooepidemicus] Length = 248 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 70/248 (28%), Positives = 122/248 (49%), Gaps = 10/248 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 K++ ++ + +YGVH V+ L N K++ + D + Sbjct: 2 KAKEINETK-DIVYGVHAVTESLLANTGNKLYIQEDLRGKHVDHIKDLATSKKVSISWTK 60 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAIL 151 + + ++ AVHQG L + LD ++ LL++LD + DPHN G+IL Sbjct: 61 KKALTEMTA-GAVHQGFVLRVSAFAYTELDELLELAQQEDNPLLLILDGLTDPHNFGSIL 119 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A G+I K + + V+AK+++GA+EH+P R++NL+ AL ++ + GF G Sbjct: 120 RTADATGVCGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFG 179 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ Sbjct: 180 TDVTGTPSYKWNT-SGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAI 238 Query: 272 ALYITQNH 279 +Y + Sbjct: 239 LMYEVFRN 246 >gi|89901014|ref|YP_523485.1| RNA methyltransferase TrmH [Rhodoferax ferrireducens T118] gi|89345751|gb|ABD69954.1| RNA methyltransferase TrmH, group 3 [Rhodoferax ferrireducens T118] Length = 256 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 105/249 (42%), Gaps = 18/249 (7%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V L + I ++ ++A R D + + K+ G Sbjct: 6 VLFGFHAVGVRLKTAPQSIIEIYFEPTRRDARMRQFLDKANEAGARLIEADGIRLAKLCG 65 Query: 107 KEAVHQGLALETAPLLSPTLD---------------AVRNSQLLMVLDHVNDPHNIGAIL 151 A +LD R L++VLD V DPHN+GA L Sbjct: 66 GHGHQGVAARVHELAQVKSLDELLEQLEAAQTDRPPTEREEALILVLDGVTDPHNLGACL 125 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R A +I K ++ +A +AK ASGA E +PY ++NL L ++ IG Sbjct: 126 RVADGAGVHAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTLNELKERNIWIIG 185 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 S + K + Q +AL+LGAEG G+R T +T + + M G +++LNVS A+ V Sbjct: 186 TSDVAPKTIYQADLKGPVALVLGAEGDGMRALTAKTCDELVSIPMRGAVESLNVSVASGV 245 Query: 272 ALYITQNHF 280 LY Sbjct: 246 CLYEALRQR 254 >gi|89893196|ref|YP_516683.1| hypothetical protein DSY0450 [Desulfitobacterium hafniense Y51] gi|219666469|ref|YP_002456904.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium hafniense DCB-2] gi|89332644|dbj|BAE82239.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536729|gb|ACL18468.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium hafniense DCB-2] Length = 246 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 110/241 (45%), Gaps = 11/241 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVG 106 +YG + V L + LL + R P + V +D++ Sbjct: 4 EIVYGRNAVWELLQSGKPVNKLLLQGEGTAGRFQDIVSHARAQKIPFQFVDKAALDRLT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 ++A HQG+ AP +D + ++VLD V DPHN+GA++R+A A Sbjct: 63 EKAKHQGILAYVAPREYAEVDDILALAGEKGEDPFILVLDEVEDPHNLGALIRTADAAGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I KR S S +A +AK+++GA+EH+ R+ NL L+ + G G ++ + Sbjct: 123 HGVIIPKRRSVSLTATVAKTSAGAVEHVLVARVGNLVQTLKDLQKAGCWVSGAEAEGTEV 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +++G+EGKGL +ET + L M G I +LN S A ++ +Y Sbjct: 183 YRSD-LTGARVIVIGSEGKGLSRLVKETCDEIVSLPMKGRINSLNASVAGSILMYEVLRQ 241 Query: 280 F 280 Sbjct: 242 R 242 >gi|262278148|ref|ZP_06055933.1| tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus RUH2202] gi|262258499|gb|EEY77232.1| tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus RUH2202] Length = 258 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 96/257 (37%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K ++ + S + + L G H A L +K+F L T+ AL D Sbjct: 8 SKDNAKIKHLRGLIELSNARKKHQQTVLEGTHLCLAWLQQ-QKKLFSLFTTEQALEHEDL 66 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + V + + + + + + L++ +++ D Sbjct: 67 KEIIELHQGHIFVISEVLYRDLSTLGTSLPCLAIIDLPKTASTIDYNVDTLIL--ENIQD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LRSA A + II T+ + S + ++ GA + LTD L K Sbjct: 125 PGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLHCFENFQLTDILPKFP 184 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F T S S + + ILG EG+G + A + PG ++L Sbjct: 185 IPVFVTSSHHSTSLYSQD---LSKPCVWILGNEGQGASDYALDHA-QCVTIPQPGGQESL 240 Query: 264 NVSNAAAVALYITQNHF 280 NV+ A ++ + Sbjct: 241 NVAIAGSICFFEMVRQR 257 >gi|317056668|ref|YP_004105135.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 7] gi|315448937|gb|ADU22501.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 7] Length = 259 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 63/258 (24%), Positives = 98/258 (37%), Gaps = 10/258 (3%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL--ARLDWDANLPH 89 K N ++ E + G + V AL I + A L Sbjct: 2 KENKINNNKTTDNKREEELILGRNPVIEALKADK-LIDMIFVNPEAKGSISLILKLAKER 60 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVND 143 PVK V +D + G A +A+ D +++ D + D Sbjct: 61 DIPVKQVREIKLDSMAGGAAHQGVIAVGACAEYVEVEDILNIAREKSEDPFIIICDEIED 120 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GAI+R+A A GII KR S S + + K+++GA +P R+ NL A Sbjct: 121 PHNLGAIIRTAEAAGAHGIIIPKRRSASLNHTVFKTSAGAASWLPVARVPNL-AAAVDDL 179 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 I + + + I L++G+EG G+ +E + L M G I +L Sbjct: 180 KKQGIWIYGTDGAGQNYSGADLRGPIGLVVGSEGFGMGRLMKEKCDMLLSLPMAGKITSL 239 Query: 264 NVSNAAAVALYITQNHFA 281 N S AA + +Y Sbjct: 240 NASVAAGIFMYEIVRQRN 257 >gi|325845921|ref|ZP_08169119.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481827|gb|EGC84859.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 237 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 7/233 (3%) Query: 51 LYGVHTVSAALNNPSR-KIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 +YG +V ++ K +L K +L + P+ KI G Sbjct: 4 IYGRKSVLETIDAGENIKKAHILDNKGKNHKLIDKIINKLEDKNVPIFYEDKDYFSKISG 63 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 HQG+ +E LD +++ + LM+LD + DPHN+GAI+RSA AF DGI+ ++ Sbjct: 64 ---NHQGVEIEVEDYKYKDLDDLKDKKRLMILDQIEDPHNLGAIIRSAEAFGFDGIVISE 120 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R S ++ + K+++GA+ +I + N+ A++++ F GL+ ++ + Q Sbjct: 121 RRSAKVNSTVYKTSAGAINNIDIAMVKNINRAIKEIKEENFWVYGLAGEADGDITQTDLT 180 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 KIAL++G EGKGL +E + + M G I +LN S A+A+A+Y + Sbjct: 181 GKIALVVGNEGKGLSRLVRENCDGLIKIPMLGKINSLNASVASAIAIYESLRQ 233 >gi|261854979|ref|YP_003262262.1| RNA methyltransferase, TrmH family, group 3 [Halothiobacillus neapolitanus c2] gi|261835448|gb|ACX95215.1| RNA methyltransferase, TrmH family, group 3 [Halothiobacillus neapolitanus c2] Length = 268 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 111/243 (45%), Gaps = 14/243 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQ------- 99 +L G H V AAL + ++ ++ + + ++ P + Sbjct: 12 WLSGFHAVEAALQHDPERVLSVIFEQGRQDKRVQQLRVLAESRGVSIEEAPEKVFADRVR 71 Query: 100 ---TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + G A +Q L LD + L++LD V DPHN+GA LRSA A Sbjct: 72 ADRELARHQGVLARYQPKPAGNEHDLFALLDNLDEPAFLLILDGVTDPHNLGACLRSAEA 131 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I+ K + + K+ASGA E +P+I+++NL L + S +G + Sbjct: 132 AGVHAVISPKDRAVGLTPTARKAASGAAERLPFIQVTNLARTLADLKSRQIWIVGAAGGG 191 Query: 217 KKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L + + +AL++G+EG+GLR TQE + + M +++LNVS AAAV L+ Sbjct: 192 MVSLYESDFAAESVALVMGSEGEGLRRLTQEGCDQLIFIPMRPPVESLNVSVAAAVCLFE 251 Query: 276 TQN 278 + Sbjct: 252 FRR 254 >gi|300214531|gb|ADJ78947.1| 23S ribosomal RNA methyltransferase [Lactobacillus salivarius CECT 5713] Length = 253 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 98/253 (38%), Gaps = 6/253 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K+ + N K + + L G+H V AL + L+ +K + Sbjct: 7 SNSRVKEWKKLNTK-KGRKRQNKYILDGLHLVKEALKANKKVEELLITSK---FEHLNEI 62 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 +P V + + I + QG+ + ++ ++LD V DP Sbjct: 63 EIPDETKVIMISEEVSKSISETQ-TPQGIFGIVSIEEEKITYPQKDVGAWLMLDGVQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIG ++R+A A G+I + + + + ++ G+ HI I + Sbjct: 122 NIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIKVINDNLSGWIRHFKDMK 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 ++ + ++ AL++G EG G+ + E + ++ + ++LNV Sbjct: 182 VPVFGSELNEHAREYTNVGQHTDFALVMGNEGNGMSKEILEMTSINLYIPIT-NAESLNV 240 Query: 266 SNAAAVALYITQN 278 + AA + ++ + Sbjct: 241 AVAAGILMFALKK 253 >gi|225871259|ref|YP_002747206.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi 4047] gi|225700663|emb|CAW95241.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi 4047] Length = 248 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 122/248 (49%), Gaps = 10/248 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 K++ ++ + +YGVH V+ L N K++ D + Sbjct: 2 KAKEINETK-DIVYGVHAVTESLLANTGNKLYIQEDLCGKHVDHIKDLATSKKVSISWTK 60 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAIL 151 + + ++ AVHQG AL + LD ++ LL++LD + DPHN G+IL Sbjct: 61 KKALTEMTA-GAVHQGFALRVSAFAYTELDELLELAQQEDNPLLLILDGLTDPHNFGSIL 119 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A G+I K + + V+AK+++GA+EH+P R++NL+ AL ++ + GF G Sbjct: 120 RTADATGVCGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFG 179 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ Sbjct: 180 TDVTGTPSYKWNT-SGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAI 238 Query: 272 ALYITQNH 279 +Y + Sbjct: 239 LMYEVFRN 246 >gi|306824475|ref|ZP_07457821.1| SpoU rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433262|gb|EFM36232.1| SpoU rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 246 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 56/274 (20%), Positives = 107/274 (39%), Gaps = 31/274 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKS---------------------TYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A ++ +L A P V + + + + QG+ Sbjct: 40 VQAGVT-IEKIFALESYRDQL---AAFPQTV---WVSEEVLLDLADTQ-TPQGIVAVIQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G ++R+A A G+I + + + S +S Sbjct: 92 EEVGLPDFRQGKFLFL--EDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+S + + S S K + + AL++G EG+G+ Sbjct: 150 QGSHFHLPIYRMSLASFVEEAKKSNLPILATTLSKDSKDYHELSPIENFALVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243 >gi|116512750|ref|YP_811657.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11] gi|116108404|gb|ABJ73544.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11] Length = 242 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 113/244 (46%), Gaps = 13/244 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102 +YG+H V+ AL + +L ++ + + + P ++ Sbjct: 2 ENTDLIYGLHAVTEAL--NGDLVNKLYVQEDLRGKNVEKIKELARIKKVNISWTPKTELN 59 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 K+ + VHQG + L + +++LD + DPHN+G+I R+A A Sbjct: 60 KLT-ENGVHQGFMARVSEFAYADLATLLPELAEKAEATILILDELTDPHNLGSIARTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II K + + + K+++GAL+H+P +R++NL+ L K+ S GF G D Sbjct: 119 TGVDAIIIPKHRAVGITPIAVKASTGALQHVPVVRVTNLSQTLDKLKSAGFWIFGTDMDG 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + K KIALI+G EG G+ ++ M + M G +++LN S AA++ +Y Sbjct: 179 TVYSKWNTK-GKIALIIGNEGHGIGHNLKKQVDEMITIPMVGHVQSLNASVAASILMYEV 237 Query: 277 QNHF 280 + Sbjct: 238 FRNR 241 >gi|254435674|ref|ZP_05049181.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus oceani AFC27] gi|207088785|gb|EDZ66057.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus oceani AFC27] Length = 259 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 112/240 (46%), Gaps = 12/240 (5%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVGKE 108 YG+H V AAL P+ ++ L + + R + V + +D +V Sbjct: 16 YGLHAVRAALEQPALQVMALWLDQARIDRSLQKLAKLAFQRGLKAQLVKREELDDLV-PG 74 Query: 109 AVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ + + L+ + LL++LD V DPHN+GA LR+A A G Sbjct: 75 ARHQGVVARCSVQPALTEEGLLTFLENLEAPPLLLLLDGVQDPHNLGACLRTAEAAGVHG 134 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220 ++T K + +AV K ASGA E IP +R++NL ++ + G +G Sbjct: 135 VVTPKDRAAGLTAVARKVASGAAERIPLVRVTNLARVMRALRERGLWLVGTVVGGSHNSL 194 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + L+LGAE +GLR TQE + + M G + +LNVS AA V L+ Q Sbjct: 195 YETDLQGPLGLVLGAEDRGLRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQR 254 >gi|88802844|ref|ZP_01118371.1| putative rRNA methylase [Polaribacter irgensii 23-P] gi|88781702|gb|EAR12880.1| putative rRNA methylase [Polaribacter irgensii 23-P] Length = 265 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 90/256 (35%), Gaps = 3/256 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K++ +KSR + + G +S A+ L + + + Sbjct: 8 HNSYIKELLKLQEKSRERKKKGLFIIEGKREISLAVAANYNFDTVLYV-DDLICEKEVLH 66 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVH-QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + + K+ + + + + V + L++V + + P Sbjct: 67 LFNENVNRIQISKEIYQKLAYRASTEGVIAVTKAKDFSLEHIKFVTKNPLILVAEGIEKP 126 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIGA+LR+A A + + AS I + + + + Sbjct: 127 GNIGALLRTADAANVAAVFI-ANPKSDLYNPNIIRASIGCVFTTQIAVGTSEEIISYLTE 185 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + + +E + A+ +G E GL +E AT ++ M G I ++N Sbjct: 186 NNIRLYATTLQNSNEYHKENYTEASAIAVGTEDTGLTAVFRERATQNINIPMQGEIDSMN 245 Query: 265 VSNAAAVALYITQNHF 280 VS AAA+ L+ + Sbjct: 246 VSVAAAIVLFEAKRQR 261 >gi|311742381|ref|ZP_07716190.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272] gi|311314009|gb|EFQ83917.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272] Length = 274 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 95/260 (36%), Gaps = 9/260 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR----KIFQLLATKNALARLDWD 84 K + ++ ++ G V AL + + ++ AT A + D Sbjct: 14 RVKHARRLATRA-FRAEQREFLAEGPQAVREALAHGGADHRGTVIEVFATSEATDQHDDL 72 Query: 85 ANLPHPFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 V V P +D + A +A R+ L+V + Sbjct: 73 VTAARRDEVVWHVVAPDVLDALTDTVAPQGVVARCAMVDRPLKALLDRSPTFLVVCADIR 132 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N GA++R A A DG++ T + ++ G+L H+P + ++ L + Sbjct: 133 DPGNAGAVIRCADAAGADGVVFTGDSVDPYNPKSVRATVGSLFHLPLVIDRDVEGTLAAL 192 Query: 203 HSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 S G Q + D A ++G E GL T+ A + + + G Sbjct: 193 QSAGLQVLAADGAGDVDLFDPSLDLAAPTAWLMGNEAWGLPEATRGRADHVVAVPIFGRA 252 Query: 261 KALNVSNAAAVALYITQNHF 280 ++LN++ AAAV LY T Sbjct: 253 ESLNLATAAAVCLYTTARSR 272 >gi|220908034|ref|YP_002483345.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 7425] gi|219864645|gb|ACL44984.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 7425] Length = 387 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 12/252 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKT 95 ++ ++ ++ +YG HT+ AAL + R++ ++ + + Sbjct: 118 TKESTDGDSDLIYGRHTLLAALES-ERQLNRIWVVNQLRYDPRFHSLLLQAKAAGVVIDE 176 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGA 149 V +D+I HQG+A + AP LD + +L+ D + DPHN+GA Sbjct: 177 VDYLRLDQITAHAK-HQGIAAQVAPYSYLELDTLLENIQGLDHPVLLAADGITDPHNLGA 235 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A G++ +R + ++ +AK A+GALEH R+ NL AL+++ + GF Sbjct: 236 IIRTAEALGAQGLVVPQRRAVGITSTVAKVAAGALEHFAVARVVNLNQALEQLKAAGFWI 295 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G+++ + KP+ + + L++GAEG GL Q + + + G +LN S A Sbjct: 296 YGMAATAAKPIYSVEFSGPVVLVVGAEGTGLSLLAQRYCDQLVSIPLLGKTPSLNASVAT 355 Query: 270 AVALYITQNHFA 281 +ALY + Sbjct: 356 GMALYEIFRQRS 367 >gi|240016589|ref|ZP_04723129.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA6140] Length = 261 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 95/282 (33%), Gaps = 24/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + + + + Q L GVH + Sbjct: 1 MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L + + + + + + + +V + KI + + Sbjct: 43 LQSGRKPVGVYIPEAKMPSEEVLKLTAVLPEDGIFSVSDGILKKISS-LSCADDILTLID 101 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L TL + +L D V DP N+G +LRSA A ++ + + + S + ++ Sbjct: 102 IPLGGTLPDKGDCAVL---DGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRA 158 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 GA + I + + + L + + L E + A + G EG G Sbjct: 159 GMGAHF-LLDIYLQADLEIWLAHYEDRVFATALREEKQAVLYGEDLCEPTAWVFGNEGAG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + A + M ++LNV+ AA + L+ A Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRA 259 >gi|99034724|ref|ZP_01314656.1| hypothetical protein Wendoof_01000527 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 254 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 81/243 (33%), Positives = 136/243 (55%), Gaps = 9/243 (3%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVP 97 + + EN +LYG HT +AL N +R+ +LL T+N + + V+ V Sbjct: 2 KSSKTNENFWLYGKHTCMSALKNKNRRCIELLVTENFYREHEKEIKQYANSKGIKVRLVE 61 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSP-----TLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + ++ ++ K A HQG+AL AP+L ++ +S +++LD V D HNIG+ILR Sbjct: 62 NKILNDVLPKGANHQGIALNVAPILYNLSIEEVAESSNDSSTIVILDQVTDTHNIGSILR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 ++ F+ D ++ +SPSE+A +AK+ASGAL+ IP I ++N+ +Q + G+ G Sbjct: 122 TSACFNVDALVLPHNHSPSENASIAKAASGALDIIPLIYVTNIVKTMQYLKKVGYWCYGF 181 Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++K+ +++ K +I G+E KG+R +E + + M I +LNVSNAAA+ Sbjct: 182 DCNAKENIDEIKSFEKKRVIIFGSEEKGMRRLVKENCDYLLKIPMSNAINSLNVSNAAAI 241 Query: 272 ALY 274 LY Sbjct: 242 GLY 244 >gi|257871416|ref|ZP_05651069.1| RNA methyltransferase [Enterococcus gallinarum EG2] gi|257805580|gb|EEV34402.1| RNA methyltransferase [Enterococcus gallinarum EG2] Length = 275 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 74/274 (27%), Positives = 121/274 (44%), Gaps = 15/274 (5%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF----LYGVHTVSAALNNPSRKIFQLLAT 74 K R+ R + + + L ++G H V AL +L Sbjct: 2 REKKQRKPSRQNTVKNKQHTRKNFREETTELIDENFVFGYHAVIEALKEGRG--NKLFMA 59 Query: 75 KNALARLD---WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---- 127 ++A +A PVK VP Q +D++ + VHQ + L P +LD Sbjct: 60 EDARGEKIDGLKEAARAQSVPVKWVPKQKLDQMS-NQGVHQSVILAITPYEYLSLDELLA 118 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + ++LD++ DPHN G+ILR+A A DGII K + + V+ K+++GA+EHI Sbjct: 119 QTKEQSFYLILDNLEDPHNFGSILRTADASGVDGIIIPKHRAVGITPVVVKTSTGAVEHI 178 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P R++NL+ A+Q++ GF G LI+G EG+G+ ++ Sbjct: 179 PIARVTNLSQAIQQLKQAGFWIFGTDMKGTDYRLWN-AQGAAGLIIGNEGRGMSEGLKKD 237 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 M + M G +++LN S AA + +Y Sbjct: 238 VDEMLTIPMTGHVQSLNASVAAGLLMYQAFTSRN 271 >gi|71907387|ref|YP_284974.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB] gi|71847008|gb|AAZ46504.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB] Length = 255 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 101/256 (39%), Gaps = 8/256 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ +K+++ + R + L GVH V A + L+ ++A A + Sbjct: 6 SRDNAFFKQLKRLAESGRERRKTGQTLLDGVHLV-EAYEKAFGPLENLIVAESAAAGGEI 64 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 A L V V + + +G GL L + +L+ D V D Sbjct: 65 AAYLEGRQAV--VLADALMRDLGLVDTPSGLLAVAPMPQRTALVDLGKDAVLL--DGVQD 120 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LR+A A ++ + + S + ++ GA + ++L + Sbjct: 121 PGNVGTLLRTAAASGVKQVLMAPGCASAWSPKVLRAGQGAHFVLAIHEEADLAAFMADYR 180 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 D L + +A I GAEG G+R + ETA + MPG +++L Sbjct: 181 GTT---AVTCLDGATSLYEARWTGPLAWIFGAEGLGVRRELIETAKLRIKIPMPGAVESL 237 Query: 264 NVSNAAAVALYITQNH 279 NV AAAV L+ Sbjct: 238 NVGAAAAVCLFEALRR 253 >gi|326391116|ref|ZP_08212662.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter ethanolicus JW 200] gi|325992815|gb|EGD51261.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter ethanolicus JW 200] Length = 247 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 118/245 (48%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103 E + G + V A+ + I ++ +K A + NL V T + K Sbjct: 2 EEQNVILGRNPVIEAIKSGKE-IEKIYISKTAGGNISKIINLAKEAGIVVSTTDNDILSK 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + G + HQG+ A +D + L++LD + DPHN+GAI+RSA A Sbjct: 61 LAGSQ-NHQGVVAVGAVYKYFDVDNLLEYAEQRKEKPFLLILDEITDPHNLGAIIRSAEA 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F GII KR + +A + K+++GA+EH+ ++SN+ + ++ + G +G ++ Sbjct: 120 FGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSNINNTIRGLKERGLWIVGTDVNA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K E+ + +A+++G+EGKG+ + + + M G I +LN S AA++ +Y Sbjct: 180 GKSFEELDYDFPLAIVIGSEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 239 Query: 277 QNHFA 281 + Sbjct: 240 VSKRK 244 >gi|269103599|ref|ZP_06156296.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Photobacterium damselae subsp. damselae CIP 102761] gi|268163497|gb|EEZ41993.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Photobacterium damselae subsp. damselae CIP 102761] Length = 247 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 66/245 (26%), Positives = 113/245 (46%), Gaps = 11/245 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 N ++G+H V A L + + ++ K RL N ++ + +D Sbjct: 3 NEMIFGIHAVKAVLASDPSRFIEVFVLKGRQDERLLPILNELQMLGVTMQQAGRKALDDK 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 V A HQG+ P + + + LL++LD V DPHN+GA LR+A A Sbjct: 63 V-HGANHQGIVARVRPGKQFNENDLDAILAGKENPLLLILDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSK 217 II K S +A +K A GA E +P +R++NL ++ +G + ++ Sbjct: 122 AVAIIVPKDRSAQLTATASKVACGAAEVVPLVRVTNLARTMRYLQEEKNIWIVGTAGEAT 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + Q +A+++GAEG+G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 182 HDIYQTKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAV 241 Query: 278 NHFAK 282 + Sbjct: 242 RQRIE 246 >gi|195978847|ref|YP_002124091.1| tRNA/rRNA methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975552|gb|ACG63078.1| tRNA/rRNA methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 248 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 115/239 (48%), Gaps = 9/239 (3%) Query: 48 NLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YGVH V+ L N K++ + D + + + ++ Sbjct: 10 KDIVYGVHAVTESLLANTGNKLYIQEDLRGKNVDHIKDLATSKKVSISWTKKKALSEMTA 69 Query: 107 KEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG L + LD + LL++LD + DPHN G+ILR+A A Sbjct: 70 -GAVHQGFVLRVSAFAYTELDELLELAQQEANPLLLILDGLTDPHNFGSILRTADATGVC 128 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+++GA+EH+P R++NL+ AL ++ + GF G Sbjct: 129 GVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFGTDVTGTPSY 188 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 189 KWNT-SGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILMYEVFRN 246 >gi|163741609|ref|ZP_02149000.1| RNA methyltransferase, TrmH family, group 3 [Phaeobacter gallaeciensis 2.10] gi|161385343|gb|EDQ09721.1| RNA methyltransferase, TrmH family, group 3 [Phaeobacter gallaeciensis 2.10] Length = 290 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 98/245 (40%), Positives = 144/245 (58%), Gaps = 7/245 (2%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++S+ + E ++L+G+H V AL NP R+ +L+ T+NA A+L DA + + Sbjct: 43 KEQSKKAASAETVWLFGLHAVRDALLNPKREKLRLMVTQNAEAKLA-DAIAQSGVETEVI 101 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRS 153 P+ + + K++VHQG ALE PL LD +++LD V DPHN+GAILRS Sbjct: 102 DPRKFNPPIDKQSVHQGAALEVKPLNWGGLDENCIGAEVPRVLLLDRVTDPHNVGAILRS 161 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A +I T+ S E+ LAK+ASGALE PY+R+ NL D + ++ GF +GL Sbjct: 162 AEVLGASAVIGTRHNSAPETGALAKTASGALERQPYLRMRNLADTIVELQRMGFLVLGLD 221 Query: 214 SDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++++ +E K D +AL+LGAEG GLR KT+ET + + G +LNVSNAAA Sbjct: 222 GEAEQTIEAVLDGRKGDPVALVLGAEGPGLRQKTKETVDHLVKIDAAGGFGSLNVSNAAA 281 Query: 271 VALYI 275 +ALY Sbjct: 282 IALYA 286 >gi|163738679|ref|ZP_02146093.1| RNA methyltransferase TrmH, group 3 [Phaeobacter gallaeciensis BS107] gi|161388007|gb|EDQ12362.1| RNA methyltransferase TrmH, group 3 [Phaeobacter gallaeciensis BS107] Length = 290 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 98/245 (40%), Positives = 144/245 (58%), Gaps = 7/245 (2%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++S+ + E ++L+G+H V AL NP R+ +L+ T+NA A+L DA + + Sbjct: 43 KEQSKKAASAETVWLFGLHAVRDALLNPKREKLRLMVTQNAEAKLA-DAIAQSGVEAEVI 101 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRS 153 P+ + + K++VHQG ALE PL LD +++LD V DPHN+GAILRS Sbjct: 102 DPRKFNPPIDKQSVHQGAALEVKPLNWGGLDENCIGAEVPRVLLLDRVTDPHNVGAILRS 161 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A +I T+ S E+ LAK+ASGALE PY+R+ NL D + ++ GF +GL Sbjct: 162 AEVLGASAVIGTRHNSAPETGALAKTASGALERQPYLRMRNLADTIVELQRMGFLVLGLD 221 Query: 214 SDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++++ +E K D +AL+LGAEG GLR KT+ET + + G +LNVSNAAA Sbjct: 222 GEAEQTIEAVLDGRKGDPVALVLGAEGPGLRQKTKETVDHLVKIDAAGGFGSLNVSNAAA 281 Query: 271 VALYI 275 +ALY Sbjct: 282 IALYA 286 >gi|114331604|ref|YP_747826.1| RNA methyltransferase [Nitrosomonas eutropha C91] gi|114308618|gb|ABI59861.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosomonas eutropha C91] Length = 260 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 7/237 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +++G H +++ L I ++ ++ AR + + + K+ G Sbjct: 6 YIFGFHAITSRLRQHPDSIKEIYLDTNRQDQRARDLMNLAETTSSRLILCNQDRLCKMTG 65 Query: 107 KEAVHQGLALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A L D + L+VLD V DPHN+GA LR A AF + Sbjct: 66 TTRHQGVAAHVMKLQQYTALEDLLDGLTEPAFLLVLDGVKDPHNLGACLRVADAFGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K + SA + K ASGA++ +P+ ++NL L+++ G +G ++D+ L+ Sbjct: 126 IVPKDRAVGLSATVHKVASGAVDTVPFFAVTNLARTLRELKEEGIWIVGTTADASDTLDS 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 IA +LGAEG+G+R T+ET + + M G I++LNVS +A + L+ T Sbjct: 186 ITLTRPIAWVLGAEGEGMRRLTRETCDQLVSIPMSGSIESLNVSVSAGICLFETCRQ 242 >gi|212695900|ref|ZP_03304028.1| hypothetical protein ANHYDRO_00433 [Anaerococcus hydrogenalis DSM 7454] gi|212677023|gb|EEB36630.1| hypothetical protein ANHYDRO_00433 [Anaerococcus hydrogenalis DSM 7454] Length = 237 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 7/233 (3%) Query: 51 LYGVHTVSAALNNPSR-KIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 +YG +V ++ K +L K +L + P+ KI G Sbjct: 4 IYGRKSVLETIDAGENIKKAHILDNKGKNHKLIDKIINKLEDKNVPIFFEDKDYFSKISG 63 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 HQG+ +E LD +++ + LM+LD + DPHN+GAI+RSA AF DGI+ ++ Sbjct: 64 ---NHQGVEIEVEDYKYKDLDDLKDKKRLMILDQIEDPHNLGAIIRSAEAFGFDGIVISE 120 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R S ++ + K+++GA+ +I + N+ A++++ F GL+ ++ + Q Sbjct: 121 RRSAKVNSTVYKTSAGAINNIDIAMVKNINRAIKEIKEENFWVYGLAGEADGDITQTDLT 180 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 KIAL++G EGKGL +E + + M G I +LN S A+A+A+Y + Sbjct: 181 GKIALVVGNEGKGLSRLVRENCDGLIKIPMLGKINSLNASVASAIAIYESLRQ 233 >gi|240128164|ref|ZP_04740825.1| putative RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|268686558|ref|ZP_06153420.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|268626842|gb|EEZ59242.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] Length = 261 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 94/282 (33%), Gaps = 24/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + + + + Q L GVH + Sbjct: 1 MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L + + + + + + + +V + KI L L Sbjct: 43 LQSGRKPVGVYIPEAKMPSEEVLKLTAVLPEDGIFSVSDGILKKISSLSCADDILTLIDI 102 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 PL LD VLD V DP N+G +LRSA A ++ + + + S + ++ Sbjct: 103 PLGGTLLDKGD----CAVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRA 158 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 GA + I + + L + + L E + A + G EG G Sbjct: 159 GMGAHF-LLDIYSQADLEIWLAHYEDRVFATALREEKQAVLYGEDLCEPTAWVFGNEGAG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + A + M ++LNV+ AA + L+ A Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRA 259 >gi|311896843|dbj|BAJ29251.1| putative rRNA methyltransferase [Kitasatospora setae KM-6054] Length = 330 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 72/286 (25%), Positives = 118/286 (41%), Gaps = 25/286 (8%) Query: 20 YAKLRRNHRDYKKMQSFNQKS-----------RHTSQPENLFLYGVHTVSAALNNPSRKI 68 + K R + K+ + ++ + G ++V AL Sbjct: 46 HPKQRAANAALKRERDAKSRAGMRRSGAGSRSGRGGAGAAELVVGRNSVVEALQ-GGVPA 104 Query: 69 FQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 L + + R + A P+ P +D++ G HQGL L+ P Sbjct: 105 TALYVQQFLDTDDRVRDAFQAANERGVPLMEAPRAQLDQMTGGL-NHQGLVLQVPPYEYA 163 Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 D L++ LD V D N+GA++RSA AF G++ +R + +A Sbjct: 164 HPDDLLEGAADAGQDALIVALDGVTDSRNLGAVVRSAAAFGAHGVVIPERRAAGMTAGAW 223 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAE 236 K++SGA +P R +NLT AL+ G +GL++D + + N + ++ G+E Sbjct: 224 KTSSGAAARLPVARATNLTRALESYQKAGVMVVGLAADGEAEIGDLDALNGPVVIVAGSE 283 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 GKGL ET + + MPG ++LN AA + LY AK Sbjct: 284 GKGLSRLVSETCDLLVRIPMPGQTESLNAGVAAGIVLYEAARLRAK 329 >gi|307266360|ref|ZP_07547898.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter wiegelii Rt8.B1] gi|306918596|gb|EFN48832.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter wiegelii Rt8.B1] Length = 247 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 62/244 (25%), Positives = 115/244 (47%), Gaps = 9/244 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103 E + G + V A+ + I ++ +K A + NL V T + K Sbjct: 2 EEQNVILGRNPVIEAIKSGKE-IEKIYVSKTAGGNISKIINLAKEAGIVVSTTDNDILSK 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + G + +A+ D + L++LD + DPHN+GAI+RSA AF Sbjct: 61 LAGSQNHQGVVAVGAVYKYFEVDDLLEYAEQRKEKPFLLILDEITDPHNLGAIIRSAEAF 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A + K+++GA+EH+ ++SN+ + ++ + G +G ++ Sbjct: 121 GVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSNINNTIRGLKERGLWIVGTDVNAG 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K E+ + +A+++G+EGKG+ + + + M G I +LN S AA++ +Y Sbjct: 181 KSFEELDYDFPLAIVIGSEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQVV 240 Query: 278 NHFA 281 + Sbjct: 241 SKRK 244 >gi|225859729|ref|YP_002741239.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 70585] gi|225720207|gb|ACO16061.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 70585] gi|301794916|emb|CBW37377.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae INV104] gi|332072159|gb|EGI82645.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA41301] Length = 246 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 103/276 (37%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L FP + I + QG+ Sbjct: 40 VQAGVT-IEKIFALENYRNQLAA-------FPQTVWISEDILLDLADSQTPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+++ + S + + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245 >gi|19553838|ref|NP_601840.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032] gi|62391479|ref|YP_226881.1| rRNA methyltransferase TRMH family [Corynebacterium glutamicum ATCC 13032] gi|21325412|dbj|BAC00034.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032] gi|41326820|emb|CAF21302.1| PUTATIVE RRNA METHYLTRANSFERASE TRMH FAMILY [Corynebacterium glutamicum ATCC 13032] Length = 313 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 64/273 (23%), Positives = 122/273 (44%), Gaps = 14/273 (5%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 A+ R H +K+ +++ R Q E + G + V L+ L + A Sbjct: 39 KAEDRTYHAAHKRKVERDRRDRGRHQREMPELVVGRNPVLECLHA-RVPATALYVAEGAA 97 Query: 79 ARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------ 128 + PV V +D++ G +HQG+ L P + Sbjct: 98 NDERLSEAVHTAAGRNLPVLEVNKLELDRMTG-NGMHQGIGLAIPPYEYADVHDLIANAA 156 Query: 129 -VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + + ++LD++ DP N+GA++RS AF +G+I +R S S +AV ++++G + Sbjct: 157 ASKKPGMFVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARV 216 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P + +N+T +++ G+Q +GL + L+ D + +++G+EGKG+ +E Sbjct: 217 PVAKETNMTRVVKEFQQNGYQVVGLDAGGDHTLDTYDGTDNVVIVVGSEGKGISRLVREN 276 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + G +++LN S AA V L Sbjct: 277 CDTIMSIPTEGWVESLNASVAAGVVLSEFSRQR 309 >gi|163847629|ref|YP_001635673.1| RNA methyltransferase [Chloroflexus aurantiacus J-10-fl] gi|222525486|ref|YP_002569957.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus sp. Y-400-fl] gi|163668918|gb|ABY35284.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aurantiacus J-10-fl] gi|222449365|gb|ACM53631.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus sp. Y-400-fl] Length = 252 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 118/247 (47%), Gaps = 13/247 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDK 103 LYG + V +L R +L ++ + + PV+ + QT+D+ Sbjct: 3 TELLYGRNAVRESLRARRRVFHRLYVSQSVQESGIIAEIINLAQQAGVPVERIERQTLDR 62 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + ++A HQG+ LE P LD R + LL++LDH+ DP NIG +LR+A A Sbjct: 63 RL-RDANHQGVMLEAEPYPYVELDTCLNAAAERREAALLLLLDHLQDPQNIGTLLRTAEA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSD 215 C G++ R + + + ++SGA+EH+ ++NL +++ H+ + + Sbjct: 122 VGCHGVVIPGRRAAEITPAVVNASSGAVEHLRVAMVTNLNQTIEELQHAGIWVVGLEQDE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + ++ + +AL++GAEG G+ +E + L + G + +LN + A ++A+Y Sbjct: 182 QAQDIDAVDLDLPLALVIGAEGTGIARLVRERCDFLVRLPIVGQVGSLNAAIAGSIAIYH 241 Query: 276 TQNHFAK 282 + Sbjct: 242 AWRQRHR 248 >gi|217967856|ref|YP_002353362.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus turgidum DSM 6724] gi|217336955|gb|ACK42748.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus turgidum DSM 6724] Length = 239 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 5/235 (2%) Query: 48 NLFLYGVHTVSAALNN--PSRKIFQLL-ATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +YG ++V AL + P KI+ + P+K V I+K+ Sbjct: 2 EDIIYGKNSVLEALKSEIPLNKIYIARGIHFDNKFNEILKLAKEKSIPIKYVERSFIEKM 61 Query: 105 VGKEAVHQ-GLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 V + + L+ N +++VLDH+ DP+N+GAI R++ I Sbjct: 62 VDGNSQGVLAILSSVPYKDWKELEKSLDNKSIIVVLDHIQDPYNLGAIARTSEFAGVSAI 121 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + K S ++V K+++GAL +IP IR+SN+ + L+++ G+ +G +++ + Sbjct: 122 VIPKARSAGITSVSFKTSAGALSYIPVIRVSNIANFLRELKGKGWFIVGADLNTENLYNK 181 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL++G+EG+GL +E+ + + G +++LNVS A + LY + Sbjct: 182 VEYNFPLALVVGSEGEGLHRIVRESCDLLVKIPSYGKVESLNVSVAVGIILYKIR 236 >gi|119947021|ref|YP_944701.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Psychromonas ingrahamii 37] gi|119865625|gb|ABM05102.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas ingrahamii 37] Length = 246 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 9/244 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102 ++ LYG+H+V A L + ++ A K RL+ + V+ + + +D Sbjct: 2 SKSELLYGIHSVDALLEKQPERFIEVYALKGREDERLNNIIAKLNEWGISVQLMNRKAMD 61 Query: 103 KIV------GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 G A + + L L+++ L++LD V DPHN+GA LRSA A Sbjct: 62 DKSEGEQHQGIIARVKTAKVLNDNDLDSLLESLTAPPFLLILDGVTDPHNLGACLRSADA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K S S + V+ K A GA E +P I ++NL A++ + G G + ++ Sbjct: 122 AGVHAVIIPKDNSASLTPVVRKVACGAAESVPLIHVTNLARAMRSLQDKGVWIYGTAGEA 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + L +AL +GAEGKGLR T+E + L M G + +LNVS A V L+ Sbjct: 182 TQSLYDCKLEGGMALAMGAEGKGLRRLTREHCDQLIKLPMAGAVSSLNVSVATGVCLFEV 241 Query: 277 QNHF 280 Sbjct: 242 VRQR 245 >gi|302518071|ref|ZP_07270413.1| rRNA methyltransferase [Streptomyces sp. SPB78] gi|302426966|gb|EFK98781.1| rRNA methyltransferase [Streptomyces sp. SPB78] Length = 297 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 98/264 (37%), Gaps = 12/264 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + ++S + G V A + + ++ AT++A R Sbjct: 37 RSPRVVAARRLAKRS-FRGKERRFLAEGPQAVREA----AGHLVEVYATEDAARRHPELL 91 Query: 86 --NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 PV + + + + + L R +L+ VL HV D Sbjct: 92 DDARARGVPVLSASEEVLAAMADTVTPQGVVGLCRFLDTGFADVLARRPRLVAVLAHVRD 151 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N G +LR A A D +I T + +++ G+L H+P + + +A+ + Sbjct: 152 PGNAGTVLRCADAAGADAVILTDASVDVYNPKCVRASVGSLFHLPVVTGVPVEEAVAGLR 211 Query: 204 SWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 G + + L+ E A + G E GL +T+ A ++ + + G Sbjct: 212 GIGVRVLAADGAGADDLDDELDRGTMGGPTAWVFGNEAWGLPEETRALADAVVRVPLHGK 271 Query: 260 IKALNVSNAAAVALYITQN-HFAK 282 ++LN++ AAAV LY + + Sbjct: 272 AESLNLATAAAVCLYASARAQRGR 295 >gi|319948866|ref|ZP_08022979.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] gi|319437468|gb|EFV92475.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] Length = 322 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 111/280 (39%), Gaps = 17/280 (6%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQ------KSRHTSQPENLFLYGVHTVSAALNNP-SRKIF 69 + HR K + + ++ G + V L Sbjct: 40 KAEDRTYHPAHRRAKAASRKAEGAQQRRRQAQKQADGPEYVVGRNPVLECLRAGVPATAL 99 Query: 70 QLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL- 126 + +A RL +L + VP +D++V +HQG+ L+ P Sbjct: 100 YVAIGSDADERLTEAVHLAAGKGISILEVPRTDLDRMVS-NGMHQGVGLQVPPYQYTDPA 158 Query: 127 ------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 LL+ LD++ D N+GA++RS AF G++ +R S S +AV +++ Sbjct: 159 DLLDMAMGSSEPALLVALDNITDTRNLGAVIRSVAAFGGHGVLIPERRSASITAVAWRTS 218 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 +GA +P R +NL L G Q +GL ++ L+ +++G+EGKGL Sbjct: 219 AGAAARLPVARATNLNRTLLDWAKAGVQLVGLDAEGDVSLDDYDGTGPTVIVVGSEGKGL 278 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +E S+ + + +++LN S AA V L Sbjct: 279 SRLVRENCDSILSIPIASEVESLNASVAAGVVLSEFARQR 318 >gi|170728541|ref|YP_001762567.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella woodyi ATCC 51908] gi|169813888|gb|ACA88472.1| RNA methyltransferase, TrmH family, group 3 [Shewanella woodyi ATCC 51908] Length = 245 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 107/244 (43%), Gaps = 10/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTID 102 + +G+H V A L + ++ ++ + + V+ + +D Sbjct: 2 KKQDITFGIHAVEAVLKHSPERVIEMWVQAGRDDQRLASLLQMAAEYGISVQKAARKVLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 HQG+ + +L + ++LD V DPHN+GA LR+A A Sbjct: 62 DKSD-SGQHQGVLARVKAVKQLNDNDLLSLVEKTETPFFLILDGVTDPHNLGACLRNADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I + S + ++K A GA E +P +++NL ++ + G +G + ++ Sbjct: 121 AGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKSLQEKGVWIVGAAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L + +A+ +GAE KGLR T+E+ S+A + M G + +LNVS A + L+ Sbjct: 181 DSDLYKTDLKGPLAIAMGAEDKGLRRLTRESCDSIASIPMAGSVSSLNVSVATGICLFEA 240 Query: 277 QNHF 280 Sbjct: 241 VRQR 244 >gi|49474315|ref|YP_032357.1| tRNA /rRNA methyltransferase [Bartonella quintana str. Toulouse] gi|49239819|emb|CAF26210.1| tRNA /rRNA methyltransferase [Bartonella quintana str. Toulouse] Length = 272 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 125/269 (46%), Positives = 168/269 (62%), Gaps = 5/269 (1%) Query: 16 KDSHYAKLRRNHRDYK----KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 K+ HYA L+ RD K + + ++ + + LYG HTV+AAL NP R L Sbjct: 3 KNFHYAHLQDRSRDKKSFPFRPAAHLKQKAVPLRQGTIRLYGFHTVNAALKNPKRVFGHL 62 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131 T NAL RL+ + P V P+ +D +VG +AVHQG+ LET L L + N Sbjct: 63 YITLNALKRLNIPKSDL-PCSVTLYSPKQLDSLVGSDAVHQGIILETESLKPCQLSELTN 121 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + L++V+D + DPHN+GAI+RSA+AF +ITT R+SP ES VLAK+ASGALE I YI Sbjct: 122 TDLVIVMDQITDPHNVGAIMRSAIAFKAGALITTCRHSPQESGVLAKAASGALEIINYIT 181 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + NL + LQ++H GF + GL S+ LE + KIAL+LGAEGKGLR KT+ET ++ Sbjct: 182 VRNLAETLQELHKAGFISFGLDSEGDHSLETALTGRKIALVLGAEGKGLRKKTRETVCAL 241 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 L MPG IK+LNVSNAA +ALY+ + Sbjct: 242 TRLDMPGNIKSLNVSNAATIALYVAHKYL 270 >gi|255654742|ref|ZP_05400151.1| putative RNA methylase [Clostridium difficile QCD-23m63] gi|296449487|ref|ZP_06891265.1| 23S rRNA methyltransferase [Clostridium difficile NAP08] gi|296878190|ref|ZP_06902204.1| 23S rRNA methyltransferase [Clostridium difficile NAP07] gi|296261678|gb|EFH08495.1| 23S rRNA methyltransferase [Clostridium difficile NAP08] gi|296430806|gb|EFH16639.1| 23S rRNA methyltransferase [Clostridium difficile NAP07] Length = 265 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 105/262 (40%), Gaps = 7/262 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALA 79 +++ K ++ KS++ ++ + G V AL I + K Sbjct: 7 SKDNEKLKYTKALL-KSKNRNKESKFIIEGYRIVVLALECMANLDYVFINEDFENKKEHV 65 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 +L D + + + ++V E + + + + + + +++LD Sbjct: 66 KLLEDLDK-KNTKIYKTTNKNFKELVDTENTQGIIGVVSFKKKKLSESINKKDKFVLILD 124 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N+G I+R+A + + II K + + +S G++ I ++ + + Sbjct: 125 RIQDPGNMGTIIRTADSAGVEAIIALKGCVDIYNPKVIRSTMGSIF-DMNIINASQDETV 183 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + S F + ++ ++ K+AL++G E G+ + + + + + G Sbjct: 184 DMLKSLDFNIVSSYLNTDNFYDKIDYGSKVALVIGNEANGINEELVSKSDILVKIPIYGK 243 Query: 260 IKALNVSNAAAVALYITQNHFA 281 ++LN + ++A+ +Y + Sbjct: 244 AESLNAAISSAILMYEIKKSLI 265 >gi|194289777|ref|YP_002005684.1| tRNA/rRNA methyltransferase protein [Cupriavidus taiwanensis LMG 19424] gi|193223612|emb|CAQ69619.1| putative TRNA/RRNA METHYLTRANSFERASE PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 260 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 87/257 (33%), Gaps = 5/257 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ +K +++ + + L GVH A + + + L++ ++ Sbjct: 6 SRDNALFKHLKALAGSTHQRRKAGQSLLDGVHLAQAYVAARGQPVTCLVSERHYDHAEVA 65 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V + + L L + +++ D V D Sbjct: 66 PLLAEVDSERVVVLADALFTQISGVVNGIDLMLVIETPAGHLPARIEQDCIIL--DGVQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G+ILRSA A + + S ++ GA H+ + L Sbjct: 124 AGNVGSILRSAAAAGIRDAFLATGCAFAWSVKTLRAGMGANFHLNIVEHCTL---EALAP 180 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + SS ++ + +A ++G EG G+ T + PG +++L Sbjct: 181 RLAIPLLATSSHAEAAVFDTDLRGPVAWVVGNEGAGVSEGWMAHVTRKVGIPQPGGMESL 240 Query: 264 NVSNAAAVALYITQNHF 280 NV+ A A+ L+ Sbjct: 241 NVAAATAICLFEAVRQR 257 >gi|169627675|ref|YP_001701324.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC 19977] gi|254806513|sp|B1MGY6|Y572_MYCA9 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAB_0572 gi|169239642|emb|CAM60670.1| Putative tRNA/rRNA methyltransferase [Mycobacterium abscessus] Length = 315 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 71/275 (25%), Positives = 119/275 (43%), Gaps = 16/275 (5%) Query: 21 AKLRRNHRDYKKM---QSFNQKSRHTSQPENL--FLYGVHTVSAALNNP-SRKIFQLLAT 74 A+ R H K+ + + + + + G + V L + Sbjct: 41 AEQRTKHPAAKRAAVQRKIADAKQRRLKQGDEAEMVLGRNPVLECLRTGVPATALYVAVG 100 Query: 75 KNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---- 128 + RL L + VP +D++ +HQGLAL+ P D Sbjct: 101 ADNDERLTESVALAADAGIAILEVPRPDLDRMST-NGLHQGLALQIPPYKYAHPDDLLAR 159 Query: 129 ---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA Sbjct: 160 ARAEAQPALLVALDNISDPRNLGAIVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAA 219 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +P R +NLT L+ G +GL + L+ IA+++G+EGKGL + Sbjct: 220 RLPVARATNLTRTLKDWQDKGITIVGLDAGGDTELDNLDGVGDIAVVVGSEGKGLSQLVR 279 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +T ++ + M G +++LN S AA V L Sbjct: 280 KTCDAVVSIPMAGPVESLNASVAAGVVLAEIARQR 314 >gi|227820613|ref|YP_002824583.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium fredii NGR234] gi|227339612|gb|ACP23830.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium fredii NGR234] Length = 285 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 97/258 (37%), Gaps = 6/258 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---- 82 + K +++ QK +H + + G+ V AL+ KI L+ K A + Sbjct: 24 NPIVKDIRALAQK-KHRDETRSFMAEGLKLVIDALDLGW-KIKTLVYAKAAKGKPQVGQV 81 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + V V + I I ++ + + + + LD V Sbjct: 82 AAKAVARGGLVLEVSEKVISTITRRDNPQMVVGIFEQRYQPLKDIRPGEGETYVALDRVR 141 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+A A GII + S ++ G++ +P R S + Sbjct: 142 DPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAMPVARASAEDFLRWQR 201 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + S S + ++ + L++G E GL + A ++A + G + Sbjct: 202 SAGVQVVATHLSGSVDYRTIDYRSKPVVLLMGNEQAGLPAELAREAGALARIPQAGRADS 261 Query: 263 LNVSNAAAVALYITQNHF 280 LN++ A + L+ + H Sbjct: 262 LNLAIATGIMLFEARRHL 279 >gi|169833146|ref|YP_001695327.1| rRNA/tRNA methylase [Streptococcus pneumoniae Hungary19A-6] gi|168995648|gb|ACA36260.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae Hungary19A-6] Length = 246 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 103/276 (37%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L FP + I + QG+ Sbjct: 40 VQAGVT-IEKIFALENYRDQLAA-------FPQTVWISEDILLDLADSQTPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+++ + S + + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245 >gi|319781460|ref|YP_004140936.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167348|gb|ADV10886.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 285 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 87/255 (34%), Gaps = 4/255 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K +++ QK + Q G+ V AL+ + + A Sbjct: 20 NPLVKDIKALAQK-KFRDQQNAFMAEGLKLVIDALDLGWQIRTLVFAKAGRGNAAVEKVA 78 Query: 87 L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V V + + I ++ + + + L+ N + + LD V D Sbjct: 79 ARTVAAGGMVLEVSEKVLVAITRRDNPQMVVGVFSQKFLALKDVRADNGDVWVALDRVRD 138 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+ A G+I + S ++ G++ +P + + + Sbjct: 139 PGNLGTVIRTVDAVGAKGVILVGDTTDPFSVETVRATMGSIFAVPVAKATTEAFLAWRGG 198 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + + + L++G E +GL + + + G +L Sbjct: 199 FSGLVAGTHLKGAVDYRSVDFSRGPVLLMMGNEQQGLPESLAASCDRLLRIPQAGRADSL 258 Query: 264 NVSNAAAVALYITQN 278 N++ A + L+ + Sbjct: 259 NLAVATGIMLFEIRR 273 >gi|325202115|gb|ADY97569.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M01-240149] Length = 261 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 93/283 (32%), Gaps = 26/283 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + + + + Q L GVH + Sbjct: 1 MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + + + + + + + V +V + KI + Sbjct: 43 LQSGRKPV-GVYIPEGKMPSEEVRRLRAVVPEGKVFSVSDGILKKISS-LTCADDVLALI 100 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + L A + +VLD V DP N+G +LRSA A ++ + + + S + + Sbjct: 101 DIPDAGALPAGGDC---VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLR 157 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + GA ++L L + F T E A + G EG Sbjct: 158 AGMGAHFLSGIYPQADLEIWLARYKGRVFATALREEKQAVLY-GEDLCGPTAWVFGNEGA 216 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G+ + A + M ++LNV+ AA + L+ + Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRS 259 >gi|317124678|ref|YP_004098790.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM 43043] gi|315588766|gb|ADU48063.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM 43043] Length = 267 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 103/259 (39%), Gaps = 8/259 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DAN 86 K +++ +++S S+ G V A+ ++ + T R DA Sbjct: 9 RVKSVRALSRRS-VRSRTGQFLAEGPQAVREAVRCAPEQVRDIYVTAEGADRHPEIVDAA 67 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT--LDAVRNSQLLMVLDHVNDP 144 L V P+ + ++ E +A+ + + L A+ ++ VL +V DP Sbjct: 68 LAAHLFVHEASPEVLHEMCDAEHPQGIVAVCRWAEPTLSAALGALPRDAVVCVLTNVRDP 127 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N G ++R A A D ++ + S + +S G+L H+P + + L + + Sbjct: 128 GNAGTVIRGADAAGADLVVVSDSSVDVSSPKVVRSTVGSLWHLPIVTGVPVPVILDALRA 187 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G + + L + A ++G E GL + ++ + + + G ++LN Sbjct: 188 RGVRLLAADGSGSTLLPEADLTGPHAWVMGNEAWGLDAEVRDACDEVVRVPIHGRAESLN 247 Query: 265 VSNAAAVALY---ITQNHF 280 ++ AA + LY ++ Sbjct: 248 LAMAAMLCLYASAESRVQR 266 >gi|225388537|ref|ZP_03758261.1| hypothetical protein CLOSTASPAR_02273 [Clostridium asparagiforme DSM 15981] gi|225045382|gb|EEG55628.1| hypothetical protein CLOSTASPAR_02273 [Clostridium asparagiforme DSM 15981] Length = 279 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 103/273 (37%), Gaps = 23/273 (8%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ K++ + K++ + G+ ++ L T++ + + Sbjct: 6 SNKQVKRVVNLRAKAKARREENCYVAEGLRMCREL---SPDQVEMLYVTED-FGSVPGNR 61 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------------------ 127 FP +TV ++ + QG+ + Sbjct: 62 RWLAGFPHETVSDVVMNYMAD-TKTPQGVLAVVKQRHYRLEELLPQAGKQIPKTSVPVGK 120 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 LM+L+ + DP N+G ILR+ G++ + + + + +S G++ + Sbjct: 121 NPPAPACLMILETLQDPGNLGTILRAGEGAGITGLVMNRDTADIYNPKVIRSTMGSILRV 180 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P++ + +L+ AL ++ S G + +QE I ++G E GL +T Sbjct: 181 PFVYVDDLSAALAQIKSAGVRLFAAHLKGTNNYDQEDYTGNIGFLIGNEAAGLTEETAAM 240 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G +++LN + A++V ++ Sbjct: 241 ADCYIKIPMAGQVESLNAAVASSVLMFEAARQR 273 >gi|119776198|ref|YP_928938.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella amazonensis SB2B] gi|119768698|gb|ABM01269.1| RNA methyltransferase TrmH, group 3 [Shewanella amazonensis SB2B] Length = 240 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 10/238 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGKE 108 +G+H V + L + ++ +L + + +T+D+ + Sbjct: 2 FGIHAVESVLKHAPERVLELWLMTGRQDERVLPLLEIAQNWGIKAQQAARKTLDEKA-ES 60 Query: 109 AVHQGLALETAP------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ + P L + L++LD V DPHN+GA LR+A A G+ Sbjct: 61 TQHQGIIIRVRPAKVLTENDLEALLDATETPFLLILDGVTDPHNLGACLRNADAAGVHGV 120 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + ++K A GA E +P +++NL ++++ G G + ++ L + Sbjct: 121 IVPKDNSAGLTPTVSKVACGAAETVPLFQVTNLARTMKRIQERGVWIAGTAGEADSTLYE 180 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A+ +GAEGKGLR ++E ++ + M G + +LNVS A + L+ Sbjct: 181 ANLKGPLAIAMGAEGKGLRRLSREGCDTLISIPMAGSVSSLNVSVATGICLFEAVRQR 238 >gi|293375373|ref|ZP_06621654.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sanguinis PC909] gi|325844481|ref|ZP_08168208.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sp. HGF1] gi|292645926|gb|EFF63955.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sanguinis PC909] gi|325489155|gb|EGC91539.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sp. HGF1] Length = 276 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 68/257 (26%), Positives = 116/257 (45%), Gaps = 14/257 (5%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKT 95 + + + + +YG +TV+ L + RK+F+++ R P K Sbjct: 18 SRRENKKESKYEVIYGKNTVNEVLES-KRKVFEVIVADTVAKAERGLMATIEKKQIPCKV 76 Query: 96 VPPQTIDKIV----GKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDP 144 +P Q +++ HQG+ P L +++LD + DP Sbjct: 77 LPRQKFEQLAKDKYDARGNHQGVLALVEPYAYMPLPDLIAKATQKEEPAFIIILDGLEDP 136 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+GAILR+A A DGI+ K S ++ +AK ++GA+EHIP ++NLT A+ ++ Sbjct: 137 HNLGAILRTADAAGVDGIVIRKDRSVGLTSTVAKLSTGAIEHIPVACVANLTVAINQLKE 196 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G G + + + L++G+EGKG+ +E +L M G + +LN Sbjct: 197 AGLWIAGTDASEAQDYRTLDATLPLGLVIGSEGKGMSRLVREACDFKVYLPMRGHVTSLN 256 Query: 265 VSNAAAVALYITQNHFA 281 S AAA+ +Y N Sbjct: 257 ASVAAALLMYEIYNKRN 273 >gi|255283672|ref|ZP_05348227.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM 14469] gi|255265737|gb|EET58942.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM 14469] Length = 277 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 95/257 (36%), Gaps = 8/257 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ +RH + V AL+ + LL K+ Sbjct: 18 YARLTEGQLLNRHEPEKGLFIAESPKVVERALDAGCIPVSLLLERKHIEGEARDVLARCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + K+ G L P L + ++ + VL++V +P N+GA Sbjct: 78 DVPVYTADFDVLTKLTGFALTRGVLCAMRRPPLPSVREVCSGARRIAVLENVMNPTNVGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T S + + G + IP+ ++ + ++ Sbjct: 138 IFRSAAALGMDAVLLTPDCSNPLYRRSIRVSMGTVFQIPWTWLTAKETQHFPSYVRFLKS 197 Query: 210 IGL--------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + S ++ +K+A+ILG+EG GL T + M + Sbjct: 198 LCFGTAAMALTDSSIPVSDQRLAGEEKLAVILGSEGDGLSAATLADCDYTVRIPMAHGVD 257 Query: 262 ALNVSNAAAVALYITQN 278 +LNV+ A+AVA + Sbjct: 258 SLNVAAASAVAFWELCR 274 >gi|270290417|ref|ZP_06196642.1| TrmH family RNA methyltransferase [Pediococcus acidilactici 7_4] gi|304384701|ref|ZP_07367047.1| TrmH family RNA methyltransferase [Pediococcus acidilactici DSM 20284] gi|270281198|gb|EFA27031.1| TrmH family RNA methyltransferase [Pediococcus acidilactici 7_4] gi|304328895|gb|EFL96115.1| TrmH family RNA methyltransferase [Pediococcus acidilactici DSM 20284] Length = 256 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 98/266 (36%), Gaps = 17/266 (6%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 EKI S+K+S K+ + + FL G H V AL + + Sbjct: 3 EKISSVKNSK----------VKEWVKLKTNN-GRKKYRRFFLEGRHPVETALV--EERQY 49 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDA 128 + L + +AN+ + V + I + + + Sbjct: 50 EYLIVEEGFDLASLEANVDED-KLIVVTKEVSKHIADTVHEQGIFLIGYVEDAVYEMPND 108 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 LL+ D+V DP NIG ++R+A A G+I + + + ++ G+ H+ Sbjct: 109 TTGQWLLL--DNVQDPGNIGTMVRTADAAGFTGVIFGSGTADFYNPKILRAMQGSQYHLQ 166 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R++ + + + + +LI+G EG G+ P+ + Sbjct: 167 LKRLNLQKWIEACHQAHQAVYGSILDEHAQSYRDIDAPKDFSLIMGNEGNGMSPELVKAT 226 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + G ++LNV+ AA V ++ Sbjct: 227 DCNLYIPIKGNAESLNVAVAAGVLMF 252 >gi|148989973|ref|ZP_01821248.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP6-BS73] gi|147924633|gb|EDK75719.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP6-BS73] Length = 246 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 103/276 (37%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L FP + I + QG+ Sbjct: 40 VQAGVT-IEKIFALENYRNQLAA-------FPQTVWISEDILLDLADSQTPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQTDLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+++ + S + + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245 >gi|225022148|ref|ZP_03711340.1| hypothetical protein CORMATOL_02181 [Corynebacterium matruchotii ATCC 33806] gi|305680558|ref|ZP_07403366.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium matruchotii ATCC 14266] gi|224945081|gb|EEG26290.1| hypothetical protein CORMATOL_02181 [Corynebacterium matruchotii ATCC 33806] gi|305660089|gb|EFM49588.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium matruchotii ATCC 14266] Length = 320 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 65/287 (22%), Positives = 121/287 (42%), Gaps = 24/287 (8%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ +H KL R RD + RH + G + V L+ Sbjct: 37 TPKAEDRVYHA--AHKRKLERQRRD---------QGRHDRSASTELVVGRNPVIECLHA- 84 Query: 65 SRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + P+ VP +D + G +HQG+ L+ P Sbjct: 85 RVPATALYIAQGTRNDDRLTEAVQLAHSRSIPLIEVPRIELDSMTG-NGLHQGVGLQIPP 143 Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + + +++VLD++ DP N+GA++RS AF G++ +R S S + Sbjct: 144 FEYADVFDLIGTVADSKEQGMIVVLDNITDPRNLGAVIRSTAAFGGQGVVIPERRSASVT 203 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 AV ++++G +P + +N+T L++ G+Q +GL + + + +++ Sbjct: 204 AVAWRTSAGTAARLPVAKATNITRTLKEFQQNGYQVVGLDAGGDTTYDSYDGTGPVVIVV 263 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G+EGKGL +ET + + +++LN S AA V L Sbjct: 264 GSEGKGLSRLVRETCDVLVSVPTTSWVESLNASVAAGVVLSEFSRQR 310 >gi|23097556|ref|NP_691022.1| tRNA:rRNA methyltransferase [Oceanobacillus iheyensis HTE831] gi|22775779|dbj|BAC12057.1| tRNA:rRNA methyltransferase [Oceanobacillus iheyensis HTE831] Length = 248 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N + G + V AL + K+ + + + V+ VP +D++ Sbjct: 2 DNEVIMGRNPVMEALKSGRSVNKVMVTEQIQGSTFQKINQLAREAGTIVQKVPRSKLDQM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ A +LD ++LD + DPHN+G+ILRSA A Sbjct: 62 --ELGNHQGVVAYVASYTYASLDDLFDRANERGEDPFFILLDELEDPHNLGSILRSADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR S +A +AK+A+GA+EHIP +R++N+++ + ++ +G +++ Sbjct: 120 GVHGVIIPKRRSVGLTATVAKTAAGAIEHIPVVRVTNMSNTIDELKERNVWIVGTEAEAD 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + Q + I +++G EGKG+ ++ L M G + +LN S A + LY Sbjct: 180 QDYRQLDGSLPIGIVIGNEGKGMSRLVRKKCDWTVGLPMVGQVSSLNASVACGLLLYEVY 239 Query: 278 NHF 280 Sbjct: 240 RKR 242 >gi|116516909|ref|YP_817193.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae D39] gi|172079590|ref|ZP_02709224.2| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC1873-00] gi|116077485|gb|ABJ55205.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae D39] gi|172042492|gb|EDT50538.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC1873-00] gi|332199399|gb|EGJ13476.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA47368] Length = 246 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 103/276 (37%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L FP + I + QG+ Sbjct: 40 VQAGVT-IEKIFALENYRDQLAA-------FPQTVWISEDILLDLADSQTPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+++ + S + + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRMTSPALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245 >gi|15903830|ref|NP_359380.1| rRNA/tRNA methylase [Streptococcus pneumoniae R6] gi|15459472|gb|AAL00591.1| Possible rRNA/tRNA methylase [Streptococcus pneumoniae R6] Length = 252 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 103/276 (37%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 7 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 45 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L FP + I + QG+ Sbjct: 46 VQAGVT-IEKIFALENYRDQLAA-------FPQTVWISEDILLDLADSQTPQGIVAVVQK 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 98 EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+++ + S + + L++G EG+G+ Sbjct: 156 QGSHFHLPIYRMTSPALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 215 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 216 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 251 >gi|239815199|ref|YP_002944109.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus S110] gi|239801776|gb|ACS18843.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus S110] Length = 248 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G H V + + + +++ ++A + + + K+ G Sbjct: 6 VIFGFHAVGVRIKTAPKSVLEVMFDTSRRDARMKQFIARAQEAGVRLVEADGLRLAKLSG 65 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A +LD + LL+VLD V DPHN+GA LR A Sbjct: 66 SHGHQGVVARVEPIAQVRSLDELLEGLEEAGTVPLLLVLDGVTDPHNLGACLRVADGAGA 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K ++ +A +AK ASGA E +PY ++NL L ++ +G S D+ Sbjct: 126 HAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTLNELKERSIWCVGTSDDAPGT 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q +AL+LGAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 186 LYQSDLKRPLALVLGAEGEGMRQLTRKTCDELVSIPMAGAVESLNVSVASGVCLYEAMRQ 245 Query: 280 FA 281 + Sbjct: 246 RS 247 >gi|117923731|ref|YP_864348.1| RNA methyltransferase [Magnetococcus sp. MC-1] gi|117607487|gb|ABK42942.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Magnetococcus sp. MC-1] Length = 246 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 109/241 (45%), Gaps = 12/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGK 107 ++GV+ V A L + R + L K + + P++ +D++ Sbjct: 7 IHGVNPVQALLESG-RPVSSLWVLKGRHGKRVEEMIEGFRARGVPIQFCERTAMDRMAD- 64 Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ AP + + D LL++LD V DPHN+GAI+RSA AF Sbjct: 65 GGAHQGVIARCAPREAMSWDDLLDVVEKAKQPLLVILDGVEDPHNLGAIMRSAEAFGALA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPL 220 +I K + +A K+++GA E + IR++NL A+++ + + Sbjct: 125 VILPKDRTAPLNAGAIKASAGAAERLDLIRVTNLARAIEQLQQRNVWVIGLAGEAGAPLI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +AL++G EG GLR T+E +A + M G + +LNVS A VALY Sbjct: 185 GTLDCKGPLALVMGNEGSGLRRLTRERCDQLAAIPMGGGVGSLNVSVATGVALYEVLRQR 244 Query: 281 A 281 A Sbjct: 245 A 245 >gi|307705545|ref|ZP_07642397.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597] gi|307620822|gb|EFN99906.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597] Length = 246 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A ++ +L FP + I + QG+ Sbjct: 40 VQAGVT-IEKIFALESYRDQLA-------SFPQTVWVSEDILLDLADSQTPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADFSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+S+ + + S + + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRMSSQALLEEAKEAAIPVLATTLSKDSVDYRELPPIENFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245 >gi|251810585|ref|ZP_04825058.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|282876415|ref|ZP_06285282.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis SK135] gi|293366881|ref|ZP_06613557.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|251805745|gb|EES58402.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|281295440|gb|EFA87967.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis SK135] gi|291319182|gb|EFE59552.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|329729977|gb|EGG66368.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis VCU144] gi|329734456|gb|EGG70769.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis VCU045] gi|329736238|gb|EGG72510.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis VCU028] Length = 246 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 100/277 (36%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ KI + +K R + + G+H + A Sbjct: 1 MEQITSAQNSKIKNANKL-------------------KKKRERDKTGLALVEGIHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I + + ++ D V + + + + G A+ P Sbjct: 42 YQSQIEVIQLFIVDTDRMSSSIIDYAK----EVYQINLKVAEALSGTVTPQGFFAIIKKP 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 TL ++++D + DP N+G ++R+A A D I+ K + + +++ Sbjct: 98 TYDKTLAKQ-----VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ HIP I Q + + Q ALILG EG+G+ Sbjct: 153 QGSIFHIPVIFDDINNYIHQFNGPVYGTALENAVSFNDIEAQANF----ALILGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + T + + G ++LNV+ A ++ +Y + Sbjct: 209 NSDLLKETTQNLTIPIYGKAESLNVAIAGSILMYQLK 245 >gi|163752931|ref|ZP_02160055.1| putative tRNA:rRNA methyltransferase [Kordia algicida OT-1] gi|161326663|gb|EDP97988.1| putative tRNA:rRNA methyltransferase [Kordia algicida OT-1] Length = 246 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 112/239 (46%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++G+ + A+N+ S K+F + L + VPP+ ++++ + Sbjct: 8 IFGIRAIIEAINSGSTIDKVFIQKGLRGELFNELDHLLRSNAISTSFVPPEKLNRLT--K 65 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQL-------LMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ +P+ LD + + + ++LD ++D N GAI+R+A DG Sbjct: 66 KNHQGVIALISPIEFHDLDTLVLNVIESGRVPKFLILDQLSDVRNFGAIIRTAECTGVDG 125 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II K+ +A K+++GA+ +P ++ ++ DA+ + S G Q + + ++ L Sbjct: 126 IIIQKKGGAPVNADAVKTSAGAIFKMPICKVDHIKDAIYHLQSSGVQIVAATEKTENTLY 185 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A+++G+EGKG+ P + A L M G I +LNVS A LY Sbjct: 186 DVDFTIPVAIVMGSEGKGVSPSILKIVDHQAKLPMLGEIASLNVSVACGAFLYEIVRQR 244 >gi|163849637|ref|YP_001637680.1| RNA methyltransferase [Methylobacterium extorquens PA1] gi|163661242|gb|ABY28609.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium extorquens PA1] Length = 268 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 108/247 (43%), Positives = 149/247 (60%), Gaps = 1/247 (0%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 + ++ +++ LYG H VS AL N R +LLAT+NALARL +A + P Sbjct: 17 RPRTQPPGPAAREGRDHVVLYGWHPVSQALANAGRHFHRLLATENALARL-KEAGIELPI 75 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 + V P ID+++G +AVHQGL E PL +P DA+ + LL+ LD + DPHN+GAI+ Sbjct: 76 EPEMVRPSAIDRLLGPDAVHQGLYAEAEPLAAPAFDAMPDDALLLALDQITDPHNVGAIV 135 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A AF I+TT R+SP+ + VLAKSASG LEH+P + + NL +AL + GF IG Sbjct: 136 RTAAAFGVTAIVTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRIG 195 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 L SD+ L+ L+LGAEGKGLR +T E + + G I++LNVSNAAA+ Sbjct: 196 LDSDAGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATGAIRSLNVSNAAAI 255 Query: 272 ALYITQN 278 LY Sbjct: 256 TLYALTR 262 >gi|152973939|ref|YP_001373456.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022691|gb|ABS20461.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cytotoxicus NVH 391-98] Length = 247 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 116/243 (47%), Gaps = 13/243 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKI 104 + ++ G + V AL + R I ++ + A + ++ P + +D++ Sbjct: 3 SEYIIGRNPVIEALRSG-RDINKIWVAEGAAKGQIQIVVALAKENKILLQYAPKKKLDQL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E HQG+ + A L+ ++LD + DPHN+G+I+R+A A Sbjct: 62 V--EGNHQGVIAQVAAYQYAELEDLFKVAAKRNEEPFFLILDEIEDPHNLGSIMRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR S +A +AK+++GA+E+IP +R++NL+ + ++ G G + K Sbjct: 120 GAHGIIIPKRRSVGLTASVAKASTGAIEYIPVVRVTNLSRTIDELKERGLWIAGTDAKGK 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N I L++G+EGKG+ + + HL M G + +LN S AA++ +Y Sbjct: 180 TDYRNLDGNMPIGLVIGSEGKGMSRIIGQKCDFLVHLPMVGKVTSLNASVAASLLMYEVY 239 Query: 278 NHF 280 Sbjct: 240 RKR 242 >gi|330817424|ref|YP_004361129.1| RNA methyltransferase, TrmH family protein [Burkholderia gladioli BSR3] gi|327369817|gb|AEA61173.1| RNA methyltransferase, TrmH family protein [Burkholderia gladioli BSR3] Length = 260 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 53/260 (20%), Positives = 102/260 (39%), Gaps = 7/260 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ YK++++ ++ + L G+H SA L+ + + T AL+ + Sbjct: 6 SRDNPLYKRLKALAGSTQQQRRGAQALLEGLHLASAYLDARGQPELCV-VTDGALSHDET 64 Query: 84 DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A + P + V P + + G+ L + V + +++ D V Sbjct: 65 QAIVARVEPQRVVSLPDALFGQLSSVVNGIGMLLLVERPAAELPGRVARTAMVL--DGVQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA A + + + + S+ + +S GA + + Sbjct: 123 DAGNVGSILRSAAAAGVSQVFCMRGTAYAWSSKVLRSGMGAHFLLDIHEDVEA---EALI 179 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 S + ++ +A + G EG G+ +E A + PG +++ Sbjct: 180 PRLDVPVALTDSHGAQAIDDCDLTGPVAWVFGNEGAGVSAAWREAAGLRVTIPQPGGMES 239 Query: 263 LNVSNAAAVALYITQNHFAK 282 LNV+ AAAV L+ K Sbjct: 240 LNVAAAAAVCLFEQCRQQRK 259 >gi|261867104|ref|YP_003255026.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412436|gb|ACX81807.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 245 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 115/242 (47%), Gaps = 11/242 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A + + ++ ++ A K RL N V+ + QT+DK Sbjct: 5 IYGIHAVKAFVTHYPERLIEVWALKGRDDQRLQPLINEIQRLGISVQFLNRQTLDKKAEG 64 Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ L +N+ LL+VLD V DPHN+GA LR+A A + Sbjct: 65 E-VHQGIIARVHSLPELNEHDLDRLLEQQNTPLLLVLDGVTDPHNLGACLRTADAAGVNA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220 +I K S ++ K A GA E++P IR++NL L+++ + ++ Sbjct: 124 VIVPKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRELQKRHNVWVVGTAGETTETL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQTKLTGALALVMGAEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVATGVCLFEIVRQR 243 Query: 281 AK 282 K Sbjct: 244 LK 245 >gi|160899466|ref|YP_001565048.1| RNA methyltransferase [Delftia acidovorans SPH-1] gi|160365050|gb|ABX36663.1| RNA methyltransferase, TrmH family, group 3 [Delftia acidovorans SPH-1] Length = 263 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 108/244 (44%), Gaps = 11/244 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V + + I ++ ++A R D + + + K+ G Sbjct: 6 VLFGFHAVGVRMKTAPQSIIEVYYEATRRDARMRQFLDRAKSAGVRLIEADGERLAKLAG 65 Query: 107 KEAVHQGLALETAPLLSPTLD--------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A A +LD + LL+VLD V DPHN+GA LR A Sbjct: 66 SHGHQGVAARVEAVAQVHSLDELLEQLEADGISKPLLLVLDGVTDPHNLGACLRVADGAG 125 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG S D+ K Sbjct: 126 AHAVIAPKDHAVGVNATVAKVASGAAETVPYFMVTNLARTLNELKERDIWIIGTSDDAPK 185 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L + AL+LGAEG G+R T++T + + M G + +LNVS A+ V LY Sbjct: 186 TLYEVDLTGPTALVLGAEGDGMRQLTRKTCDELIGIPMMGAVSSLNVSVASGVCLYEALR 245 Query: 279 HFAK 282 + Sbjct: 246 QRGQ 249 >gi|260460492|ref|ZP_05808743.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum WSM2075] gi|259033597|gb|EEW34857.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum WSM2075] Length = 285 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 86/255 (33%), Gaps = 4/255 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K +++ K + Q G+ V AL+ + + A Sbjct: 20 NPLVKDIKALALK-KFRDQQNAFMAEGLKLVIDALDLGWQIRTLVFAKAGRGNPAVGKVA 78 Query: 87 L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V V + + I ++ + + + L+ N + + LD V D Sbjct: 79 ARTVAAGGTVLEVSEKVLVAITRRDNPQMVVGVFSQKFLALKDVHADNGDVWVALDRVRD 138 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+ A GII + S ++ G++ +P + + + Sbjct: 139 PGNLGTVIRTVDAVGAKGIILVGDTTDPFSVETVRATMGSIFAVPIAKATTEAFLAWRGA 198 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + + + L++G E +GL + + + G +L Sbjct: 199 FSGLVAGTHLKGAVDYRSVDFSRGPVLLMMGNEQQGLPESLAASCDRLLRIPQAGRADSL 258 Query: 264 NVSNAAAVALYITQN 278 N++ A + L+ + Sbjct: 259 NLAVATGIMLFEIRR 273 >gi|322377611|ref|ZP_08052101.1| SpoU rRNA Methylase family protein [Streptococcus sp. M334] gi|321281376|gb|EFX58386.1| SpoU rRNA Methylase family protein [Streptococcus sp. M334] Length = 252 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 103/276 (37%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 7 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 45 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L FP + I + QG+ Sbjct: 46 VQAGVT-IEKIFALENYRDQLA-------SFPQTVWVSEDILLDLADSQTPQGIVAVVQK 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 98 EEVGEADFSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+S+ + + S + + L++G EG+G+ Sbjct: 156 QGSHFHLPIYRMSSQALLEKAKKAGISVLATTLSKDSVDYRELPPIENFVLVMGNEGQGI 215 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 E+A + H+ M G ++LNV+ AA + ++ Sbjct: 216 SSLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 251 >gi|329766852|ref|ZP_08258380.1| hypothetical protein HMPREF0428_00077 [Gemella haemolysans M341] gi|328837577|gb|EGF87202.1| hypothetical protein HMPREF0428_00077 [Gemella haemolysans M341] Length = 251 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 104/256 (40%), Gaps = 10/256 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ K +Q + ++ + + G H V A+ + ++ +++ ++ Sbjct: 6 SNKKIKDIQKLKEN-KNIKKYGKYLIEGKHLVEEAMQAN--VVEEIFISESFD---EYKL 59 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + V + + + + ++ + +++LD V DP Sbjct: 60 IEAFQGEITKVADSVMRHLSDTITTQGII---AVCNIEEKKLDIKKYKKVLILDRVQDPG 116 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A AF+ D II K + + +S G+ HI +L D L+ M + Sbjct: 117 NLGTIIRTADAFAFDCIILGKGTTSLYGQKVIRSTQGSNFHIDCFDNVDLVDLLEHMKDF 176 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 L +D I +A+I G EG G+ + + ++ + MPG ++LNV Sbjct: 177 SIFATSLKADKYIEQLDNI-VGNVAVIFGNEGSGVSEEILDKVNNLLKISMPGKAESLNV 235 Query: 266 SNAAAVALYITQNHFA 281 S AA + ++ + Sbjct: 236 SIAAGIVMHYISTNLK 251 >gi|269467951|gb|EEZ79686.1| rRNA methylase [uncultured SUP05 cluster bacterium] Length = 247 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 66/245 (26%), Positives = 120/245 (48%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTID 102 ++LF+YG H + A L+ + I ++ N + H V+ Q ++ Sbjct: 2 SKSLFIYGFHGIQAQLDTNPQNILKVSTLDNRQDKRLNTLIQQLDQHGIRVEKTSKQKLE 61 Query: 103 KIVGKEAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 K+ G HQG+ E L + + + L+++LD + DP N+GA LRSA Sbjct: 62 KLSG-SRTHQGVVAEVLLPTLPNHDELLNHVSKLNHPSLILILDSIQDPRNLGACLRSAN 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A D ++ K S +A++ K+++GAL + ++NL+ +++ + IGL Sbjct: 121 AAGVDCVVINKDGSAPVNALVHKTSAGALNQLKVFSVTNLSRSIKALQKQDIWIIGLDGS 180 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + Q + IA+++G EG GLR T+++ +A + M G +++LNVS A +AL+ Sbjct: 181 TDQSFYQIDLSSSIAIVMGTEGSGLRRLTKQSCDQLAMIPMKGNVESLNVSVATGIALFE 240 Query: 276 TQNHF 280 T Sbjct: 241 TSRQR 245 >gi|121604792|ref|YP_982121.1| RNA methyltransferase [Polaromonas naphthalenivorans CJ2] gi|120593761|gb|ABM37200.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polaromonas naphthalenivorans CJ2] Length = 253 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 111/243 (45%), Gaps = 13/243 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V L + + ++ ++A R D + + K+ G Sbjct: 7 VLFGFHAVGVRLKTAPKSVLEVFYDVSRRDARMRQFTDRVREAGVRMVECDGLRLAKMCG 66 Query: 107 KEAVHQGLALETA---------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+ LL +A LL+VLD V DPHN+GA LR A Sbjct: 67 SHG-HQGVVARVDAVAQVTSLDELLEQLEEAGTAQPLLLVLDGVTDPHNLGACLRVADGA 125 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K ++ +A +AK ASGA E +PY ++NL L ++ IG S D++ Sbjct: 126 GAQAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTLNELKERNIWCIGTSDDAE 185 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K + +ALILGAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 186 KTIYDVDLTGPVALILGAEGEGMRQLTRKTCDELVSIPMQGAVESLNVSVASGVCLYEAL 245 Query: 278 NHF 280 Sbjct: 246 RQR 248 >gi|325962200|ref|YP_004240106.1| rRNA methylase, , group 3 [Arthrobacter phenanthrenivorans Sphe3] gi|323468287|gb|ADX71972.1| rRNA methylase, putative, group 3 [Arthrobacter phenanthrenivorans Sphe3] Length = 329 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 67/288 (23%), Positives = 118/288 (40%), Gaps = 20/288 (6%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRK 67 K K + + + + + + E + G ++V AL Sbjct: 43 KAHKAKQLAERSAAKRNPGARSAGAAKSGPKGRATEE--VVTGRNSVVEALRAGIPAKAL 100 Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 + + + P+ +D++ ++AVHQGL L+ P Sbjct: 101 HVAIRIEMDDRVKESLKIAAERGIPLLETGKPELDRMT-EDAVHQGLVLQIPPYDYQDAY 159 Query: 128 -------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 V N+ L + LD + DP N+GAI+RS AFS G+I +R S +A Sbjct: 160 ELAEETVAKWKKGHVANAPLFVALDGITDPRNLGAIIRSVSAFSGHGVIVPERRSVGVTA 219 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALIL 233 K+++GA +P R SNL +AL++ + G +GL D L + + +++ Sbjct: 220 SAWKTSAGAAVRVPVARASNLNNALKQFKNMGIFVLGLDGDGDVSLPDLTLATEPVCIVV 279 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G+EGKGL +E + + + +++LN S A ++LY A Sbjct: 280 GSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGISLYEISRQRA 327 >gi|239998937|ref|ZP_04718861.1| putative RNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|240080778|ref|ZP_04725321.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA19] gi|240112855|ref|ZP_04727345.1| putative RNA methyltransferase [Neisseria gonorrhoeae MS11] gi|240117904|ref|ZP_04731966.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID1] gi|240123463|ref|ZP_04736419.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|240125708|ref|ZP_04738594.1| putative RNA methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|254493723|ref|ZP_05106894.1| RNA methyltransferase [Neisseria gonorrhoeae 1291] gi|268594782|ref|ZP_06128949.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268596894|ref|ZP_06131061.1| RNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268598935|ref|ZP_06133102.1| RNA methyltransferase [Neisseria gonorrhoeae MS11] gi|268603614|ref|ZP_06137781.1| RNA methyltransferase [Neisseria gonorrhoeae PID1] gi|268682090|ref|ZP_06148952.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|268684300|ref|ZP_06151162.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|226512763|gb|EEH62108.1| RNA methyltransferase [Neisseria gonorrhoeae 1291] gi|268548171|gb|EEZ43589.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268550682|gb|EEZ45701.1| RNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268583066|gb|EEZ47742.1| RNA methyltransferase [Neisseria gonorrhoeae MS11] gi|268587745|gb|EEZ52421.1| RNA methyltransferase [Neisseria gonorrhoeae PID1] gi|268622374|gb|EEZ54774.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|268624584|gb|EEZ56984.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|317164227|gb|ADV07768.1| putative RNA methyltransferase [Neisseria gonorrhoeae TCDC-NG08107] Length = 261 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 94/282 (33%), Gaps = 24/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + + + + Q L GVH + Sbjct: 1 MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L + + + + + + + +V + KI + + Sbjct: 43 LQSGRKPVGVYIPEAKMPSEEVLKLTAVLPEDGIFSVSDGILKKISS-LSCADEILTLID 101 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L TL + +L D V DP N+G +LRSA A ++ + + + S + ++ Sbjct: 102 IPLGGTLPDKGDCAVL---DGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRA 158 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 GA + I + + L + + L E + A + G EG G Sbjct: 159 GMGAHF-LLDIYSQADLEIWLAHYEDRVFATALREEKQAVLYGEDLCEPTAWVFGNEGAG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + A + M ++LNV+ AA + L+ A Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRA 259 >gi|332638057|ref|ZP_08416920.1| rRNA methylase [Weissella cibaria KACC 11862] Length = 256 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 97/277 (35%), Gaps = 23/277 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ ++ S + + + L G H V A Sbjct: 1 METITSVQNSRVKSWQKLQTK-------------------KGRQASKTYLLDGWHLVQEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + K+ ++AT LA LP PV + K+ QG+ E + Sbjct: 42 IQHEG-KLHAIMATPEQLAEHQE--ALPLGVPVFEITTDIAKKLSD-LVTPQGVFAEVSL 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + LD + DP NIG ++R+A A G++ S ++ Sbjct: 98 PTATREPRFIHDGAWLFLDAIQDPGNIGTMVRTADAAGFAGVVFGNGSVDPYSPKALRAM 157 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+ + L + ALI+G EG+G+ Sbjct: 158 QGSQFHMTLTTGDLQDWTAAFTQNDINVYGTQLDPEAADLFTIPAQSQFALIMGNEGQGM 217 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + T ++ + G ++LNV+ AA +A++ + Sbjct: 218 AADLAKMTTKNLYIPLTGDAESLNVAVAAGIAMFALK 254 >gi|220911631|ref|YP_002486940.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter chlorophenolicus A6] gi|219858509|gb|ACL38851.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter chlorophenolicus A6] Length = 329 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 115/288 (39%), Gaps = 20/288 (6%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRK 67 K K + + + + + + E + G ++V AL Sbjct: 43 KAHKAKQLSERSAAKRNPGARSAGAGKSGPKGRATEE--VVTGRNSVVEALRAGIPAKAL 100 Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 + + + P+ +D++ +AVHQGL L+ P Sbjct: 101 HVAIRIEMDDRVKESLKLAAERGIPLLETGKPELDRMTD-DAVHQGLVLQIPPYDYADAY 159 Query: 128 -------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 + N+ L + LD + DP N+GAI+RS AFS G+I +R S +A Sbjct: 160 ELAEETVEKWKKGHISNAPLFVALDGITDPRNLGAIIRSVSAFSGHGVIVPERRSVGVTA 219 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALIL 233 K+++GA +P R SNL AL++ + G +GL D L + + +++ Sbjct: 220 SAWKTSAGAAVRVPVARASNLNSALKQFKNMGIFVLGLDGDGDVSLPDLSLATEPVCIVV 279 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G+EGKGL +E + + + +++LN S A + LY A Sbjct: 280 GSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGITLYEVSRQRA 327 >gi|51246711|ref|YP_066595.1| tRNA/rRNA methyltransferase [Desulfotalea psychrophila LSv54] gi|50877748|emb|CAG37588.1| related to tRNA/rRNA methyltransferase [Desulfotalea psychrophila LSv54] Length = 295 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 58/270 (21%), Positives = 110/270 (40%), Gaps = 15/270 (5%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---AR 80 RR+++ + + + R + ++G+H + AL +I +++A K+ Sbjct: 23 RRDNKSAGQDKKAATQDR-RIRFSEDLIWGIHPIVEALKYEPNRISEIIAQKDRRGAKFD 81 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------- 133 + V + ++ A HQG+ + Sbjct: 82 EIVELARAAKVKVTFIDSISLQGDGAASARHQGVIAKVTQADLMDFADFLQKFKDAVDRG 141 Query: 134 ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++V D + DPHN+GAI+RSA+A G++ T+ S AKS++GA+ H+ Sbjct: 142 EKPRIIVCDSLQDPHNLGAIVRSALASGAIGVLLTRERSAPLGGTAAKSSAGAISHMDIC 201 Query: 191 RISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +++NL +L + + + L N +++G+EG G+RP + Sbjct: 202 QVTNLVKSLAELKKVGAWVFGAIKDADAVSLFDADLNVPACIVVGSEGTGIRPLVRRECD 261 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G + +LN S AAAV L+ Sbjct: 262 IQLSIPMVGELDSLNSSVAAAVILFEAMRQ 291 >gi|37523750|ref|NP_927127.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421] gi|35214755|dbj|BAC92122.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421] Length = 338 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 74/267 (27%), Positives = 124/267 (46%), Gaps = 12/267 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--- 80 R + K + E LYG +V AAL N SR + ++ T+ Sbjct: 66 SRAPKTIKTRMAPEAAPTVVESDEAELLYGKQSVLAALQN-SRPLNRVWLTEKLRYDPRF 124 Query: 81 -LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQ 133 DA + V P+ +D++ HQG+A + A + R Sbjct: 125 LRLLDAAKAGGAVIDIVEPRRLDQLTA-GGNHQGVAAQAAAHPYVEFEELIASLVERPDP 183 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +L+ D + DPHN+GA++RSA AF GII +R + +A +AK A+GA+EH+P R++ Sbjct: 184 VLLAADGIEDPHNLGALIRSAEAFGFQGIILPQRRAVGVTATVAKVAAGAVEHLPIARVT 243 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL A++++ G+Q +G + + L + + + +++G+EGKG+ TQ M Sbjct: 244 NLNQAIERLKEAGYQVVGTQEKASQALYELKLDGPLVVVVGSEGKGISLLTQRHCDHMVS 303 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 + + G +LN S A + LY Sbjct: 304 IPLAGKTTSLNASVAGGIMLYEVMRQR 330 >gi|315223129|ref|ZP_07864997.1| RNA 2'-O ribose methyltransferase substrate binding [Streptococcus anginosus F0211] gi|315187818|gb|EFU21565.1| RNA 2'-O ribose methyltransferase substrate binding [Streptococcus anginosus F0211] Length = 246 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 101/278 (36%), Gaps = 35/278 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + + K K R++ + + G H A Sbjct: 1 MNIITSKANNVVKNTKKLLQKKYRKD---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 + + R IF L + + V V + + QG+ E Sbjct: 40 VQAQAEFRNIFVLEIFFDKVKDFSQ---------VHVVTADILADLAD-SKTPQGIVAEI 89 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 A ++ L + + V DP N+G I+R+A A DG+ ++ + + + Sbjct: 90 AFEKQSAPSFLKGKYLFL--EDVQDPGNVGTIIRTADAAGYDGVFISQHSADIYNLKTLR 147 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 S G+ H+P R+ S + AL+LG EG+ Sbjct: 148 SMQGSHFHLPVYRVKTADFLELAKQVQLPILATTLSKDSMDYRELAPLSDFALVLGNEGQ 207 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 G+ + E A ++ H+ M G ++LNV+ AA + ++ Sbjct: 208 GISHEMAEAADNLIHISMKGRAESLNVAVAAGILIFAL 245 >gi|308174562|ref|YP_003921267.1| RNA methylase [Bacillus amyloliquefaciens DSM 7] gi|307607426|emb|CBI43797.1| putative RNA methylase [Bacillus amyloliquefaciens DSM 7] gi|328912890|gb|AEB64486.1| putative RNA methylase [Bacillus amyloliquefaciens LL3] Length = 257 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 49/276 (17%), Positives = 96/276 (34%), Gaps = 30/276 (10%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 I K++K+ K H + + + G H AL Sbjct: 11 KRIDSAKNQKVKDWKKLHTK-------------------KERLKTNTFLIEGEHLAEEAL 51 Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 + L+ ++A+ A+L P + + E + A+ Sbjct: 52 KSKGTVKEILVKDESAIP-----ADLDMSIPCYVLSEDAFSAVTETETPQRIAAVC---- 102 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 + + L+++D V DP N+G ++R+A A D ++ + S +SA Sbjct: 103 -HMPEEKPDPLKRLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGDGTADPYSGKTLRSAQ 161 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G+ HIP ++ + + + ALI+G EG G+ Sbjct: 162 GSHFHIPILKRPLDEFIDELKSQGVAIYGTALENGAVYQ-SVKPEESFALIVGNEGAGVD 220 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + ++ + G ++LNV+ AAA+ +Y + Sbjct: 221 AGLLQKTDLNLYVPLYGQAESLNVAVAAAILVYHLR 256 >gi|255008645|ref|ZP_05280771.1| putative rRNA methylase [Bacteroides fragilis 3_1_12] gi|313146380|ref|ZP_07808573.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135147|gb|EFR52507.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 269 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 91/248 (36%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + + ++R + + AL+ + L K+ Sbjct: 17 FSTLTEAQLRNRLEPEKGLFIAESPKVIKVALDAGYEPLAILCEQKHITGDAANIIERCG 76 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + + G L P+L + R ++ ++++D V D NIGA Sbjct: 77 DIPVYTGDRELLATLTGYVLTRGVLCAMRLPVLRSMEEVCRRARRIVIIDGVVDTTNIGA 136 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ + + + + GA+ +P+ + L + Sbjct: 137 IFRSAAALGIDAVLLMRNSCSPLNRRAIRVSMGAVFLVPWTWLDGPLSDLARWGFRTVAM 196 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + K+A+++G EG GL + A + + M + +LNV+ A+ Sbjct: 197 ALTDNSISIDDPVLTTEPKLAIVMGTEGDGLSHERIAEADYVVRIPMSHGVDSLNVAAAS 256 Query: 270 AVALYITQ 277 A+A + + Sbjct: 257 AIAFWQLR 264 >gi|148998503|ref|ZP_01825944.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP11-BS70] gi|183603868|ref|ZP_02722493.2| possible rRNA/tRNA methylase [Streptococcus pneumoniae MLV-016] gi|307068582|ref|YP_003877548.1| rRNA methylase [Streptococcus pneumoniae AP200] gi|147755696|gb|EDK62742.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP11-BS70] gi|183577619|gb|EDT98147.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae MLV-016] gi|306410119|gb|ADM85546.1| rRNA methylase [Streptococcus pneumoniae AP200] Length = 246 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 102/276 (36%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L FP + I + QG+ Sbjct: 40 VQAGVT-IEKIFALENYRNQLAA-------FPQTVWISEDILLDLADSQTPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTAEAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+++ + S + + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P E+A + H+ M G ++LNV+ A + ++ Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVATGILIFHL 245 >gi|297538778|ref|YP_003674547.1| tRNA/rRNA methyltransferase SpoU [Methylotenera sp. 301] gi|297258125|gb|ADI29970.1| tRNA/rRNA methyltransferase (SpoU) [Methylotenera sp. 301] Length = 261 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 101/261 (38%), Gaps = 12/261 (4%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 + R++ +K+++ SR L GVH + A + + ++ + Sbjct: 7 ISRDNSVFKQLKKLADNSRERRSEGQTLLDGVHLIEAYMATFGEPVMIIIPEGKSSIEAT 66 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 P +P ++ + LA + P L A + ++L+ + Sbjct: 67 GLIQTLTEIPTIMLPTLMFAELTPVASATGILA----LVKIPQLTAPEQPKFALMLEDIQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G++LR+A A + + + + + S + GA +P + +NL L Sbjct: 123 DPGNLGSMLRTAAAAGVEAVYLSTSCTDAWSPKALRGGQGAQFVLPIVERANLIAELDNF 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM----PG 258 + ++ + L + A ++G EG GLR +T A + M G Sbjct: 183 NG----NSYATAMHGESLYAQDLTQATAFVIGNEGAGLRKQTIAAADKSITIPMTESQFG 238 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LN AAA+ L+ + Sbjct: 239 SVESLNAGAAAAICLFERKRQ 259 >gi|110636730|ref|YP_676937.1| TrmH family tRNA methyltransferase [Cytophaga hutchinsonii ATCC 33406] gi|110279411|gb|ABG57597.1| tRNA/rRNA methyltransferase, TrmH family [Cytophaga hutchinsonii ATCC 33406] Length = 268 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 64/269 (23%), Positives = 117/269 (43%), Gaps = 14/269 (5%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALAR 80 + RN+ + S+++ + ++G+ V AL KI + A+ + Sbjct: 1 MDRNYPKKRFSSSYDENK---PANDKDMIFGIRPVIEALEAGKEIDKILIQRNIEQAVVQ 57 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------- 133 ++ PV VP + +D++ HQG+ + + +LD + ++ Sbjct: 58 ELFELANRVKVPVIKVPVEKLDRVT--RKNHQGVICYLSAINFASLDNIVSACFESGKNP 115 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL++LD V D N GA+ RSA D +I R + ++ K+++GAL HIP R+ Sbjct: 116 LLVMLDRVTDVRNFGAVARSAECLGVDAMIVPSRGAAQLNSDAVKTSAGALYHIPVCRVD 175 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +L D ++ + G + I S + + E D +++G+E G+ A + Sbjct: 176 HLIDTVKYLKQCGLRIIACSEKASINVYDEDLTDPCVILMGSEEDGISMDLLRYADAHVT 235 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G I +LNVS A + L K Sbjct: 236 IPMSGHINSLNVSVATGMILSEVTRQRLK 264 >gi|306830168|ref|ZP_07463352.1| SpoU rRNA methylase [Streptococcus mitis ATCC 6249] gi|304427694|gb|EFM30790.1| SpoU rRNA methylase [Streptococcus mitis ATCC 6249] Length = 246 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 58/274 (21%), Positives = 107/274 (39%), Gaps = 31/274 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + R I ++ A ++ +L A P V + + + QG+ Sbjct: 40 VQAGVR-IEKIFALESYRDQL---AAFPQTV---WVSEDILQDLADTQ-TPQGIVAVIQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G ++R+A A G+I + + + S +S Sbjct: 92 EEVGLPDFSQGKFLFL--EDVQDPGNVGTMIRTADATGFTGVIVSDKSADIHSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+S T + S S K + + AL++G EG+G+ Sbjct: 150 QGSHFHLPIYRMSLATFIEEAKKSNLPILATTLSKESKDYRELSPLENFALVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243 >gi|42520767|ref|NP_966682.1| RNA methyltransferase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410507|gb|AAS14616.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Drosophila melanogaster] Length = 254 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 80/243 (32%), Positives = 136/243 (55%), Gaps = 9/243 (3%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVP 97 + + EN +LYG HT +AL N +R+ +LL T+N + + V+ V Sbjct: 2 KSSKTNENFWLYGKHTCMSALKNKNRRCIELLVTENFYREHEKEIKQYANSKGIKVRLVE 61 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSP-----TLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + ++ ++ K A HQG+AL AP+L ++ +S +++LD V D HNIG+ILR Sbjct: 62 NKILNDVLPKGANHQGIALNAAPILYNLSIEEVAESSNDSSTIVILDQVTDTHNIGSILR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 ++ F+ D ++ +SPSE+A +AK+ASGAL+ +P I ++N+ +Q + G+ G Sbjct: 122 TSACFNVDALVLPHNHSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGF 181 Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++K+ +++ K +I G+E KG+R +E + + M I +LNVSNAAA+ Sbjct: 182 DCNAKENIDEIKSFEKKRVIIFGSEEKGMRRLVKENCDYLLKIPMSNAINSLNVSNAAAI 241 Query: 272 ALY 274 LY Sbjct: 242 GLY 244 >gi|294496964|ref|YP_003560664.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551] gi|295702331|ref|YP_003595406.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319] gi|294346901|gb|ADE67230.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551] gi|294799990|gb|ADF37056.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319] Length = 247 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 68/244 (27%), Positives = 118/244 (48%), Gaps = 13/244 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDK 103 E+ F+ G + V AL + R I +L + + + V+ VP + I++ Sbjct: 2 EHEFIIGRNPVLEALKSG-RDINKLWIAEGSQGGSMGQITQLAKRNGVLVQFVPKKKIEQ 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 +V +HQG+A + A LD S ++LD + DPHN+G+I+R+A A Sbjct: 61 MVD--GIHQGVAAQVAAYQYAELDDLFNLAEKRNESPFFLLLDELEDPHNLGSIMRTADA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII KR S +A +AK+++GA+EH+P R++NL+ + ++ G +G + Sbjct: 119 VGAHGIIIPKRRSVGLTATVAKASTGAIEHVPVARVTNLSRTIDELKDRGVWIVGTDAKE 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + L++G+EGKG+ +E + L M G + +LN S AA++ +Y Sbjct: 179 SDDYRNLDGGMPLTLVIGSEGKGMSRLIREKCDFLVQLPMVGHVTSLNASVAASLLMYEV 238 Query: 277 QNHF 280 Sbjct: 239 YRKR 242 >gi|257869609|ref|ZP_05649262.1| RNA methyltransferase [Enterococcus gallinarum EG2] gi|257803773|gb|EEV32595.1| RNA methyltransferase [Enterococcus gallinarum EG2] Length = 255 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 93/258 (36%), Gaps = 8/258 (3%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + L + + K+++ QK ++ +Q + G H V A+ + I L T Sbjct: 2 NRMKEILSKKNILIKEVKKLAQK-KYRNQTNTYIIDGWHLVQEAIAASA-PINYLFVTDK 59 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 + V + + + A+ + T+ + Sbjct: 60 GIQETGNQLKDYQD-KVFRISDEVAAFLSDLPTPQGIFAVIEKETVQETI-----HGNWL 113 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +LD+V DP N+G ++R+A A G+ + S + +S G+ H+P + Sbjct: 114 ILDNVQDPGNVGTMIRTADAAGFAGVFLGTGTADRYSTKVLRSMQGSNFHLPILEGDVPA 173 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + + + K A ILG EG+G+ P ++ + Sbjct: 174 FIQKLKAQGTAIYGTELNKEAVSYTELSKKGTAAFILGNEGQGVHPDILGLTDQNVYIPI 233 Query: 257 PGIIKALNVSNAAAVALY 274 G ++LNV+ AA + +Y Sbjct: 234 YGQAESLNVAIAAGILMY 251 >gi|217421307|ref|ZP_03452811.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 576] gi|217395049|gb|EEC35067.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 576] Length = 262 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 57/261 (21%), Positives = 103/261 (39%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + L G H SA L+ + + T ALA Sbjct: 2 KAITSRDNPLYKRLKALAGSTHQQRRGAQALLEGFHLASAYLDAAGQPQLCV-VTDGALA 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + + P + V P + + GL L A V + +++ Sbjct: 61 HEEARGIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVARPAPALPARVAGTSVVL-- 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + + S+ + +SA GA + + Sbjct: 119 DGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ S + + +A + G EG G+ + +E AT + PG Sbjct: 179 IE---RLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV L+ Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256 >gi|78222568|ref|YP_384315.1| RNA methyltransferase TrmH, group 3 [Geobacter metallireducens GS-15] gi|78193823|gb|ABB31590.1| RNA methyltransferase TrmH, group 3 [Geobacter metallireducens GS-15] Length = 250 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 118/244 (48%), Gaps = 12/244 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDK 103 + LYG+++ AL R+ F+L +++A PV+ + I + Sbjct: 2 KEEILYGINSAMEALR-GKRRAFELFVSRDASDRRMEKLLKLATEKGVPVRNRDKRDISR 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156 + G + HQG+AL+ L + ++ L++ LD V DPHN+GA++RSA Sbjct: 61 LCGTD-HHQGVALKLEGFPYTGLSDIIDAWRESGERGLILALDGVQDPHNLGALIRSAAC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I K + +A + KSA+GA E IP +++NL AL ++ GF G + + Sbjct: 120 AGAHGVIIPKDRAARVTATVEKSAAGAAETIPVAQVTNLAQALDELKEAGFWIYGAADSA 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L + + + +++G+EG+G+RP ++ + + + G + +LN S A V L+ Sbjct: 180 ASSLYDQDLSGNVVIVIGSEGEGVRPLVRKKCDFLVAIPLRGGVSSLNASVAGGVILFEV 239 Query: 277 QNHF 280 Sbjct: 240 LRQR 243 >gi|115351501|ref|YP_773340.1| RNA methyltransferase [Burkholderia ambifaria AMMD] gi|172060520|ref|YP_001808172.1| RNA methyltransferase [Burkholderia ambifaria MC40-6] gi|115281489|gb|ABI87006.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia ambifaria AMMD] gi|171993037|gb|ACB63956.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria MC40-6] Length = 247 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 116/239 (48%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + + + ++L + R D + + + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHTAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + S LD ++ LL+VLD V DPHN+GA LR A + Sbjct: 66 TER-HQGVVARVEDVPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDDASATLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A+++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 DTKLDGPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|257067130|ref|YP_003153386.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii DSM 20548] gi|256799010|gb|ACV29665.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii DSM 20548] Length = 234 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 119/230 (51%), Gaps = 4/230 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG V L+ + + +N+ L D + V + DKI + Sbjct: 4 IYGRKPVLDTLDTDIKVYKAYILKQNSKLVDKIIDKLNQKNIEISFVDKRFFDKI---DM 60 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ LE +L+ + +S L++LD + DPHN+GAI+RSA +F D +I +R S Sbjct: 61 NHQGVMLEVESFKYSSLEDLSDSSRLIILDKIEDPHNLGAIIRSAESFGFDAVIIPERRS 120 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 S ++ + K+++GA+ +I +R++NLT ++ + GF GL+ ++ + K+ Sbjct: 121 ASVTSTVYKTSAGAINNIKVVRVTNLTRTIKDLKDKGFWIYGLAGEAHSDISHADLRGKV 180 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L++G EG+G+ +E + ++ M G + +LN S AAA+++Y Sbjct: 181 GLVVGNEGEGISRLVRENCDMLINIPMLGRVNSLNASVAAAISMYELLRQ 230 >gi|119713688|gb|ABL97738.1| rRNA methyltransferase [uncultured marine bacterium EB0_41B09] Length = 246 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 101/240 (42%), Gaps = 9/240 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG H++++ + + ++ + + + +D +V Sbjct: 7 IYGFHSITSQIRLDPLVVKEIFIDEARSDGRVNDLMKIIKANEVKFHLSTKDRLDGMVSG 66 Query: 108 EAVHQGL------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + + + L ++LD V DP N+GA R A A D Sbjct: 67 NKHQGVVALVREAQNKYVTVEDIIEENYDKPLLFLILDGVVDPQNLGACFRVADAMGVDA 126 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + +A + K A G E +P++ ++NL ++ + + G ++ K L+ Sbjct: 127 LICPKDNAVGLNATVRKVACGGAESVPFVVVTNLARTIRYLKNSNVFVYGTDDNANKSLQ 186 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + IAL++G+EGKG+R T E + + M G +++LNVS A+ + LY + Sbjct: 187 KTNFKGSIALVMGSEGKGMRRLTNELCDDIFSIPMMGQVESLNVSVASGICLYEINRQRS 246 >gi|271967363|ref|YP_003341559.1| tRNA/rRNA methyltransferase SpoU [Streptosporangium roseum DSM 43021] gi|270510538|gb|ACZ88816.1| tRNA/rRNA methyltransferase (SpoU) [Streptosporangium roseum DSM 43021] Length = 276 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 99/257 (38%), Gaps = 5/257 (1%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 K ++ K + + G V AL + +L AT A R Sbjct: 12 PRVKAVRRL-TKRAFRDRDRSFLAEGPQAVREALALEG-VVVELFATAEAEQRHADIVAA 69 Query: 88 PHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V + + ++ LA+ + ++L+ VL HV DP Sbjct: 70 ATAAGLAVHRASGEVMAELAQTVTPQGLLAVCRFVHVPLDGAVTAGARLVAVLAHVRDPG 129 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G +LR+A A D ++ T + ++++G+L H+P + A+Q++ Sbjct: 130 NAGTVLRTADAAGADAVVFTDASVDPYNGKCVRASAGSLFHLPVTTGVPVAQAVQRLKDA 189 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + + K+ L+ + A I G E GL + A + + + G ++LN+ Sbjct: 190 GLRVLAADGAGKQTLDDVDLSGPTAWIFGNEAWGLPEEILRLADEVVRVPIHGRAESLNL 249 Query: 266 SNAAAVALYITQN-HFA 281 + AAAV LY + A Sbjct: 250 ATAAAVCLYASARSQRA 266 >gi|146319556|ref|YP_001199268.1| tRNA/rRNA methyltransferase [Streptococcus suis 05ZYH33] gi|146321750|ref|YP_001201461.1| tRNA/rRNA methyltransferase [Streptococcus suis 98HAH33] gi|253752559|ref|YP_003025700.1| SpoU rRNA methylase family protein [Streptococcus suis SC84] gi|253754385|ref|YP_003027526.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7] gi|253756319|ref|YP_003029459.1| SpoU rRNA methylase family protein [Streptococcus suis BM407] gi|145690362|gb|ABP90868.1| tRNA/rRNA methyltransferase [Streptococcus suis 05ZYH33] gi|145692556|gb|ABP93061.1| tRNA/rRNA methyltransferase [Streptococcus suis 98HAH33] gi|251816848|emb|CAZ52495.1| SpoU rRNA methylase family protein [Streptococcus suis SC84] gi|251818783|emb|CAZ56623.1| SpoU rRNA methylase family protein [Streptococcus suis BM407] gi|251820631|emb|CAR47391.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7] gi|292559171|gb|ADE32172.1| tRNA/rRNA methyltransferase [Streptococcus suis GZ1] gi|319758973|gb|ADV70915.1| tRNA/rRNA methyltransferase [Streptococcus suis JS14] Length = 242 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 113/240 (47%), Gaps = 9/240 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 +N +YGVH V +L K++ + + P +T+ + Sbjct: 2 EQNDIVYGVHAVVESLEANTGNKLYIQDDLRGKNVEKIKALAAEKKVSISWTPKKTLSDM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG L + L ++ L+++LD + DPHN G+ILR+A A Sbjct: 62 T-EGAVHQGFVLRVSEFAYADLSVILEKAEQEDNPLILILDGLTDPHNFGSILRTADATQ 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII K + + V+AK+++GA+ H+P R++NL+ L K+ GF G + Sbjct: 121 VAGIIIPKHRAVGVTPVVAKTSTGAVAHVPIARVTNLSQTLDKLKEAGFWVFGTDMNGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV +Y Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISSNIKKQVDEMITIPMKGHVQSLNASVAAAVLMYEVFR 239 >gi|225630621|ref|YP_002727412.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia sp. wRi] gi|225592602|gb|ACN95621.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia sp. wRi] Length = 254 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 81/243 (33%), Positives = 136/243 (55%), Gaps = 9/243 (3%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVP 97 + + EN +LYG HT +AL N +R+ +LLAT+N + V+ V Sbjct: 2 KSSKTNENFWLYGKHTCMSALKNKNRRCIELLATENFYREHKKEIRQCVDSKGIKVRLVE 61 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILR 152 + ++ ++ K A HQG+AL AP+L ++ +S +++LD V D HNIG+ILR Sbjct: 62 SKILNDVLPKGANHQGIALNVAPILYNLSIEEIAESSNDSSTIVILDQVTDTHNIGSILR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 ++ F+ D ++ +SPSE+A +AK+ASGAL+ +P I ++N+ +Q + G+ G Sbjct: 122 TSACFNVDALVLPHNHSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGF 181 Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++K+ +++ K +I G+E KG+R +E + + M I +LNVSNAAA+ Sbjct: 182 DCNTKENIDEIKSFEKKRVIIFGSEEKGVRRLVKENCDYLLKIPMSNAINSLNVSNAAAI 241 Query: 272 ALY 274 LY Sbjct: 242 GLY 244 >gi|205372087|ref|ZP_03224904.1| 23S rRNA methyltransferase [Bacillus coahuilensis m4-4] Length = 246 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 119/243 (48%), Gaps = 14/243 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKI 104 ++ G + V AL R I ++ + + V VP + +D++ Sbjct: 3 TDYIAGKNPVIEALKAG-RDINKIWVAEGSQKGQMQQVLGLAKESSVQVLFVPKKKMDQM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V + HQG+ + A +LD + + L+++LD + DPHN+G+I+R+A A Sbjct: 62 V---SNHQGVVAQVAAYQYSSLDDMFALAESRGETPLVLLLDELEDPHNLGSIMRTADAV 118 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A +AK+++GA+EHIP R++NL+ + ++ G G + K Sbjct: 119 GAHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLSQTIDELKERGIWVTGTDAKGK 178 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + Q + + L++G+EGKG+ +E + L M G + +LN S AA++ LY Sbjct: 179 QDYRQMDASMPLCLVIGSEGKGMSRLVKEKCDFLVQLPMRGHVTSLNASVAASLLLYEVH 238 Query: 278 NHF 280 Sbjct: 239 RKR 241 >gi|315225471|ref|ZP_07867284.1| 23S rRNA methyltransferase [Capnocytophaga ochracea F0287] gi|314944569|gb|EFS96605.1| 23S rRNA methyltransferase [Capnocytophaga ochracea F0287] Length = 283 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 100/259 (38%), Gaps = 6/259 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + KK+ ++KSR + + G + AL + LL A Sbjct: 23 QNPLIKKIVLLSEKSRERKKVGICVVEGAREIRLALE-GGYTLETLLYQPEIFAEEHLQR 81 Query: 86 NL---PHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHV 141 L + + KI + + +A ++T TL +S LL+V + Sbjct: 82 LLSYTAQKANPIAISKEVYQKISYRSSTEGVIALIQTKKHSLDTLAFATDSPLLLVAEAP 141 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 P NIGA+LR+A A + D +I +S I + T+ + Sbjct: 142 EKPGNIGALLRTADAANIDAVII-ANPKTDLYNPNIIRSSVGCVFTVPIATGSTTEVIDF 200 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + G + + + KP + A+++G E +GL + +T + M GII Sbjct: 201 LKAKGINSYCAALTASKPYYEVSFKKASAIVVGTEDQGLTEEWLTHSTQNIIIPMEGIID 260 Query: 262 ALNVSNAAAVALYITQNHF 280 ++NVS AAAV ++ + Sbjct: 261 SMNVSVAAAVLIFEAKRQR 279 >gi|297582428|ref|YP_003698208.1| TrmH family RNA methyltransferase [Bacillus selenitireducens MLS10] gi|297140885|gb|ADH97642.1| RNA methyltransferase, TrmH family, group 3 [Bacillus selenitireducens MLS10] Length = 255 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 113/245 (46%), Gaps = 8/245 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDK 103 ++YG + V L + +A + +++ L V+TVP + +D+ Sbjct: 4 ANQDYVYGKNPVIEVLRSGQTVHKVWIAEDSMKGQMNQVLGLCKKMNVQVQTVPRKRLDQ 63 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAF 157 + A +A A + D +VLD + DPHN+G+ILR+A A Sbjct: 64 MADGIAHQGVIAQAAAYEYAEIDDLFARAKERGEDPFFLVLDELEDPHNLGSILRTADAS 123 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR S ++ +AK+++GA+ H+P R++NL + ++ G +G + Sbjct: 124 GAHGVIIPKRRSVGLTSTVAKTSAGAIAHVPVARVTNLARTMDELKKQGLWFVGTDAKGD 183 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 E + +AL++G+EGKG+ +E + + + G + +LN S AA++ +Y Sbjct: 184 VSYEGMTVDLPLALVIGSEGKGMSRLVKEKCDFLVSIPLMGKVTSLNASVAASLLMYEVL 243 Query: 278 NHFAK 282 + Sbjct: 244 RKRRE 248 >gi|254670213|emb|CBA05373.1| putative RNA methyltransferase [Neisseria meningitidis alpha153] gi|325130237|gb|EGC53007.1| RNA methyltransferase, TrmH family [Neisseria meningitidis OX99.30304] Length = 261 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 51/282 (18%), Positives = 93/282 (32%), Gaps = 24/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + + + + Q L GVH + Sbjct: 1 MKHISSANNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L + + + + + V +V + KI + Sbjct: 43 LQSGGMPVGVYIPEAKMPSEEVRKLTAVLPEDGVFSVSDGILKKISS-LTCADDVLALID 101 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + L A + +VLD V DP N+G +LRSA A ++ K + + S + ++ Sbjct: 102 IPDAGALPAGGDC---VVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRA 158 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 GA + I + + L + + L E + A + G EG G Sbjct: 159 GMGAHF-LSEIYPQADLEIWLARYEDRVFATALREEKQAVLYNEDLREPTAWVFGNEGAG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + A + M ++LNV+ AA + L+ + Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRS 259 >gi|182684908|ref|YP_001836655.1| spoU rRNA methylase family protein [Streptococcus pneumoniae CGSP14] gi|182630242|gb|ACB91190.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae CGSP14] Length = 252 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 102/276 (36%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 7 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 45 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L FP + I + QG+ Sbjct: 46 VQAGVT-IEKIFALENYRNQLAA-------FPQTVWISEDILLDLADSQTPQGIVAVVQK 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 98 EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+++ + S + + L++G EG+G+ Sbjct: 156 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 215 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P E+A + H+ M G ++LNV+ A + ++ Sbjct: 216 SPLMAESADQLVHISMKGQAESLNVAVATGILIFHL 251 >gi|168492052|ref|ZP_02716195.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC0288-04] gi|307128172|ref|YP_003880203.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 670-6B] gi|183573736|gb|EDT94264.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC0288-04] gi|301800735|emb|CBW33383.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae OXC141] gi|306485234|gb|ADM92103.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 670-6B] Length = 246 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 102/276 (36%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L FP + I + QG+ Sbjct: 40 VQAGVT-IEKIFALENYRNQLAA-------FPQTVWISEDILLDLADSQTPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+++ + S + + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P E+A + H+ M G ++LNV+ A + ++ Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVATGILIFHL 245 >gi|323490473|ref|ZP_08095680.1| putative tRNA/rRNA methyltransferase [Planococcus donghaensis MPA1U2] gi|323395877|gb|EGA88716.1| putative tRNA/rRNA methyltransferase [Planococcus donghaensis MPA1U2] Length = 255 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 92/274 (33%), Gaps = 25/274 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ + K + + + + G H A Sbjct: 1 MKRIESNQNSLVKHWKK------------------LSTTRKERDKFAEFLVEGFHLTEEA 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + L+ + WD +V +I E A Sbjct: 43 LR-KKDLVKSLIVREGVDIPEGWDI---EGVAHYSVTATVAKEISETEHTQGIFAHCA-- 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T D ++ L+++D V DP NIG ++R+A A D +I K + + +SA Sbjct: 97 QPEFTEDEQKSWTKLLMIDAVQDPGNIGTMIRTASASGIDAVILGKGCADPYNPKTVRSA 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ I ++ + Q S +S E + ALI+G EG G+ Sbjct: 157 QGSHFQISIVKGELMEWTEQTKASGIPIFGTALQNSTPVHEAKTLEQ-FALIVGNEGSGV 215 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P + + + G ++LNV+ A + LY Sbjct: 216 DPVLLQQTDQNLMVPLYGNAESLNVAVATGILLY 249 >gi|329769072|ref|ZP_08260494.1| RNA methyltransferase [Gemella sanguinis M325] gi|328839563|gb|EGF89139.1| RNA methyltransferase [Gemella sanguinis M325] Length = 271 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 75/270 (27%), Positives = 132/270 (48%), Gaps = 16/270 (5%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLL--ATK 75 +++N+ YK+++ N++ + Q P+ + G + + A+ + L + Sbjct: 1 MKKNNNYYKELRKKNKEQKAPVQNTELDPDKEVIAGRNAILEAIKSGREINKILFQEGIE 60 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AV 129 + + + VP + +D + HQG+ AP LD + Sbjct: 61 KGRLKSIFAIANEKKIVCQEVPKRKLDNTTTER--HQGVIAFVAPYNYFELDEVLNKLDI 118 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 S L++LDH+ DPHN+GAI+R+A A GII KR + S K+++GA+EH+P Sbjct: 119 NKSTTLLILDHIEDPHNLGAIIRTAEASGVKGIIIPKRRAAVVSQTAVKASAGAIEHMPV 178 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETA 248 IR+S+LTDA++K+ GF G + + +I D +A+++G EG+G+ + Sbjct: 179 IRVSSLTDAIKKLKEKGFWIAGTTLAERSEEYTKIAKDVPLAIVIGNEGEGMSKVVTKEC 238 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + HL M G I++LN S AA + +Y Sbjct: 239 DFLYHLPMLGKIQSLNASVAAGIIMYERIK 268 >gi|319442437|ref|ZP_07991593.1| putative rRNA methylase [Corynebacterium variabile DSM 44702] Length = 318 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 11/259 (4%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLAT-KNALARLDWDANLP 88 + + ++++ + G + V L+ PS ++ L T + Sbjct: 56 ERRDSGRQAKKDPDNTPELVVGRNPVIECLHAHVPSTALYVALGTGNDDRLSEAVHTAAE 115 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHV 141 PV V +D++ G +HQG+ L+ P D L++VLD++ Sbjct: 116 RGIPVLEVARDEMDRMTG-NGMHQGIGLQVPPYKYAADDDLIERAKDSGRPGLIVVLDNI 174 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+GA++RS AF G++ +R S S +AV ++++G +P R +NL +L+K Sbjct: 175 TDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVTWRTSAGTAARLPVARATNLVRSLKK 234 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G+Q +GL + L+ D + +++G+EGKGL ET + + M ++ Sbjct: 235 FQQSGYQVVGLDAGGSHTLDTYDGTDPVVVVVGSEGKGLSRLVGETCDDILSIPMTSTVE 294 Query: 262 ALNVSNAAAVALYITQNHF 280 +LN S AA V L Sbjct: 295 SLNASVAAGVVLSEFARQR 313 >gi|294139210|ref|YP_003555188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Shewanella violacea DSS12] gi|293325679|dbj|BAJ00410.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Shewanella violacea DSS12] Length = 251 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 109/249 (43%), Gaps = 15/249 (6%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102 + +G+H V A L + ++ +L + ++ + V+ + +D Sbjct: 2 KKQDITFGIHAVEAVLKHSPERVIELWVLLGRDDKRLMPILESAAEYGVSVQYAARKVLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-----------VRNSQLLMVLDHVNDPHNIGAIL 151 G HQG+ + + L++LD V DPHN+GA L Sbjct: 62 DKSG-GGQHQGVLARVKAVKQLNDKDLTALLDKIEVENTETPFLLILDGVTDPHNLGACL 120 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A G+I + S + ++K A GA E +P +++NL ++ + G +G Sbjct: 121 RNADAAGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKSLQDKGVWIVG 180 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + +++ L + +A+ +GAE KGLR T+E S+ + M G + +LNVS A+ V Sbjct: 181 AAGEAEHNLYKADLKGSLAIAMGAEDKGLRRLTREGCDSLVSIPMTGSVSSLNVSVASGV 240 Query: 272 ALYITQNHF 280 L+ Sbjct: 241 CLFEAVRQR 249 >gi|88704452|ref|ZP_01102166.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Congregibacter litoralis KT71] gi|88701503|gb|EAQ98608.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Congregibacter litoralis KT71] Length = 257 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 107/246 (43%), Gaps = 13/246 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKI 104 + +G+H V L + + +L K + + PV +P +D++ Sbjct: 3 LDYAFGLHAVEELLRRQPKTVRRLWVQKGRDDGRVQALLALATAADTPVSRLPRGKLDEL 62 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV----------RNSQLLMVLDHVNDPHNIGAILRSA 154 V L L L++VLD V DPHN+GA LRSA Sbjct: 63 VPGRHQGVVAELGDNTAGQSDLRWSEAQLEQAVSGNPRALVLVLDGVTDPHNLGACLRSA 122 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A ++ K + +AV+ K A GA E +P +R++NL +L + + G G + Sbjct: 123 DAAGVTAVVVPKDNAADITAVVRKVACGATETVPLVRVTNLARSLDMLKAAGVWIYGTAG 182 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + L +AL++GAEG G+R T+E + +L M G + +LNVS A V L+ Sbjct: 183 EASESLYSSDLAGPLALVMGAEGAGMRRLTRERCDFLVNLPMAGAVSSLNVSVATGVCLF 242 Query: 275 ITQNHF 280 + Sbjct: 243 EIRRQR 248 >gi|319937667|ref|ZP_08012070.1| 23S rRNA methyltransferase [Coprobacillus sp. 29_1] gi|319807102|gb|EFW03716.1| 23S rRNA methyltransferase [Coprobacillus sp. 29_1] Length = 243 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 61/237 (25%), Positives = 110/237 (46%), Gaps = 7/237 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG +TV +L + ++++ KNA V V + + + Sbjct: 4 YIYGKNTVLESLK-GEKPVYEIYMMKNAKDEKLLSLAKAKNAKVNIVAHKGVLNQLVGNV 62 Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 VHQG+ +T ++D LL++LD + DPHN+GAILR+ A DG+I Sbjct: 63 VHQGVVAQTEGYGYSSIDEIIDAIPKGKQPLLLMLDGLEDPHNLGAILRTCDAIEVDGVI 122 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K S ++ +AK ++GA++++ +++NL+ L + GF +G + + Sbjct: 123 IGKNRSVGLTSTVAKVSTGAIDYVKVAQVTNLSRTLDDLKKRGFWVVGCELNESQDYRAI 182 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 N + +++G+EG G+ + L M G + +LN S A A+ LY N Sbjct: 183 DYNMPLVIVVGSEGFGISKLVKSHCDMNVVLPMTGHVTSLNASVATALILYQVYNSR 239 >gi|291539916|emb|CBL13027.1| rRNA methylases [Roseburia intestinalis XB6B4] Length = 289 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 93/277 (33%), Gaps = 25/277 (9%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL------------- 72 +++ K + +K++ ++ G A P + Q+ Sbjct: 6 SNQQMKNLTLLMKKAKARNEQGVFVAEGRKMFLEA---PVEWVKQVCVSESFYETCMQGN 62 Query: 73 ---ATKNALARLDWD------ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 K+ + + + + V + + L + P + Sbjct: 63 MQDCMKSCTPKHGEEKLNRKVLERLNETGYEIVSDNVFKSVSDTQTPQGILCVIKKPEYA 122 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 L++L+ + DP N+G ++R+ G+I + + +S G+ Sbjct: 123 LEKLIKGEQTHLLILESIQDPGNLGTMVRTGEGAGITGVIMNQTTVDLFNPKTIRSTMGS 182 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + +P+ +L + + ++ K A ++G EG GL + Sbjct: 183 IYRVPFFITKDLAGTISSLKEQQVNVYAAHLKGTLSYDEPDYKKKTAFLIGNEGNGLSDE 242 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + + M G +++LN + +A++ +Y T Sbjct: 243 IADLADTYIKIPMQGQVESLNAAISASLLMYETGRQR 279 >gi|293609868|ref|ZP_06692170.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828320|gb|EFF86683.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123096|gb|ADY82619.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 258 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 95/257 (36%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K ++ + S + + L G H A L +KIF L T+ AL D Sbjct: 8 SKDNAKIKHLRGLIELSNARKKHQQTVLEGTHLCLAWLQQ-QKKIFSLFTTEQALEHEDL 66 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V + + + + + + L++ +++ D Sbjct: 67 KKITELHQGHIFVISEVLYRDLSTLGTSLPCLAIIDLPKTASTIDYNVDTLIL--ENIQD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LRSA A + II T+ + S + ++ GA + LTD L K Sbjct: 125 PGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLHCFENFQLTDILPKFQ 184 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F T S S + + ILG EG+G + A + PG ++L Sbjct: 185 IPVFVTSSHRSTSLYSKD---LSKPCVWILGNEGQGASDYALDHA-QSVTIPQPGGQESL 240 Query: 264 NVSNAAAVALYITQNHF 280 NV+ A ++ + Sbjct: 241 NVAIAGSICFFEMVRQR 257 >gi|145589451|ref|YP_001156048.1| RNA methyltransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047857|gb|ABP34484.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 251 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 11/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPF---PVKTVPPQTIDKIV 105 L G H V A L + + + R D + + + K+ Sbjct: 4 ILVGFHAVQARLRVDPDSLKSVYFDPSRRDRRMGDFLKQAEEILGERLHAADAERLHKLA 63 Query: 106 GKEAVH-------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 G + + T + ++ + L +VLD V DPHN GA LR A Sbjct: 64 GHDRHQGVVALAEKITVARTITEVVEDAESAQKKPLFLVLDGVTDPHNFGACLRVADGAG 123 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D ++ K S S +A ++K +SGA E IP I ++NL ++++M G +G +++K Sbjct: 124 VDAVVIPKDRSASINATVSKVSSGASEVIPVITVTNLVRSMKEMQEAGVWLVGTDDEAEK 183 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + IA+++GAEG+G+R T+ET + + M G++++LNVS A+ V LY Sbjct: 184 SIYDLDLTGPIAIVMGAEGEGMRRLTRETCDELVRIPMQGVVESLNVSVASGVCLYEALR 243 Query: 279 HF 280 Sbjct: 244 QR 245 >gi|307943096|ref|ZP_07658441.1| rRNA methylase [Roseibium sp. TrichSKD4] gi|307773892|gb|EFO33108.1| rRNA methylase [Roseibium sp. TrichSKD4] Length = 279 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 106/282 (37%), Gaps = 10/282 (3%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN + K+ ++ ++K + K+++ + +H +Q G+ + A Sbjct: 1 MN--TSGKAPRVGAVK----QITSHANPIVKEIKGLIAQRKHRTQSGLFVAEGLKLATDA 54 Query: 61 LNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L + L + N +A+ + + V + + K+ + + Sbjct: 55 LEAGWDVRYLALGPEARENPIAQQAAASAKARGALILEVNTAILSAMTRKDNPQMVVGVY 114 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 +S + ++ + LD V DP N+G ++R+ A G++ + + Sbjct: 115 EQKTVSLSNIDPNSAATWVALDRVRDPGNLGTVIRTIDAVGASGVVLVGDCTDPFAVETV 174 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 ++ G+L H+P I+ + L W +G + + + L++G E Sbjct: 175 RATMGSLFHVPIIKTAKD-AFLDFAKKWPGPVVGTHLEGSVDYRTADYAEPVLLLMGNEQ 233 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +GL ++ + G +LN++ A + LY + + Sbjct: 234 QGLDASMTRVCKTLIRIPQVGQADSLNLAVATGITLYEIRRN 275 >gi|113868019|ref|YP_726508.1| 23S rRNA methyltransferase [Ralstonia eutropha H16] gi|113526795|emb|CAJ93140.1| 23S rRNA methyltransferase [Ralstonia eutropha H16] Length = 260 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 87/257 (33%), Gaps = 5/257 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ +K +++ + + L GVH A + + + +++ ++ Sbjct: 6 SRDNALFKHLKTLATSTHQRRKAGQSLLDGVHLAQAYVAARGQPVTCVVSERHYDHAEVA 65 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V + + L L + + +++ D V D Sbjct: 66 PVLALIEAERVVVLADALFTQISGVVNGIDLMLVIETPVGHLPARIEQDCIIL--DGVQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G+ILRSA A + + S ++ GA H+ + L Sbjct: 124 AGNVGSILRSAAAAGIQHAFLATGCAFAWSVKTLRAGMGANFHLNIVEHCTL---ESLAP 180 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + SS + + +A ++G EG G+ T + PG +++L Sbjct: 181 RLAVPLLATSSHADAAVFDTDLRGPVAWVVGNEGAGVSDGWMAHVTRKVGIPQPGGLESL 240 Query: 264 NVSNAAAVALYITQNHF 280 NV+ A A+ L+ Sbjct: 241 NVAAATAICLFEAVRQR 257 >gi|261392545|emb|CAX50100.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase (23S rRNA Gm2251 2'-O-methyltransferase) [Neisseria meningitidis 8013] Length = 261 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 54/283 (19%), Positives = 98/283 (34%), Gaps = 26/283 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + + + + Q L GVH + Sbjct: 1 MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + + + + + + + V +V + KI + Sbjct: 43 LQSGRKPV-GVYIPEGKMPSEEVRRLRAVVPEGKVFSVSDGILKKISS-LTCADDVLALI 100 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + L A + +VLD V DP N+G +LRSA A ++ K + + S + + Sbjct: 101 DIPDAGALPAGGDC---VVLDGVQDPGNVGTVLRSAAAAGIGVVVLGKGCADAWSPKVLR 157 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + GA + ++L L F T L + + L E + A + G EG Sbjct: 158 AGMGAHFLLDIYSQADLEIWLASYKGRVFATA-LREEKQVVLYGEDLCEPTAWVFGNEGA 216 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G+ + A + M ++LNV+ AA + L+ + Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRS 259 >gi|291530276|emb|CBK95861.1| rRNA methylases [Eubacterium siraeum 70/3] Length = 262 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 91/256 (35%), Gaps = 2/256 (0%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + + K+ + ++ ++ Q G A+ + T A + Sbjct: 5 SKQNTYIKEYRKLTEQRKYRRQTGYFVCEGAKLAVEAVKSGCALGENAYYTAAAAEKYPE 64 Query: 84 DANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 +L + + + D I ++ L + +S+ ++L+++ Sbjct: 65 CISLLRESCKMIQISEEVADSISDTKSPQGIFITVRHLDKILNLSTIDSSRQFIILENLQ 124 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D NIG I+RS AFS DG+I + + +SA G+L +P Sbjct: 125 DMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLFRLPIYCCDTEEAITLLQ 184 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 SD L +E K A+++G EG G+ ++ + + ++ Sbjct: 185 KGGFTVYSAELSDRSVKLGEEKLPQKTAVVIGNEGNGVSDTVKKLCDKSLFIPIS-SAES 243 Query: 263 LNVSNAAAVALYITQN 278 LN S AA+V + Sbjct: 244 LNASVAASVIAWEMSK 259 >gi|239930484|ref|ZP_04687437.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291438845|ref|ZP_06578235.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291341740|gb|EFE68696.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 313 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 63/255 (24%), Positives = 105/255 (41%), Gaps = 13/255 (5%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQLLATKNALARLDWDANLPHP-FPV 93 Q+ R + + + G + V AL S Q + R + Sbjct: 59 QQRRGGGRSSSELVVGRNPVVEALREGVPASTLYVQQFIDNDERVREALQLAAERGGINL 118 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHN 146 P +D++ HQGL L+ P + L++ LD V DP N Sbjct: 119 MEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDLVAGAHDEDEDPLIVALDGVTDPRN 177 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GA++RS AF G++ +R + +A K+++G P R +NLT AL+ G Sbjct: 178 LGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALEAYKKAG 237 Query: 207 FQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +GL++D + + + + +++G+EGKGL ET + MPG ++LN Sbjct: 238 IVVVGLAADGEAEIGELDALEGPVVIVVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNA 297 Query: 266 SNAAAVALYITQNHF 280 AA + LY Sbjct: 298 GVAAGIVLYEAARRR 312 >gi|206890340|ref|YP_002248180.1| RNA methyltransferase, TrmH family [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742278|gb|ACI21335.1| RNA methyltransferase, TrmH family [Thermodesulfovibrio yellowstonii DSM 11347] Length = 261 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 99/282 (35%), Gaps = 28/282 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M LI ++ I +K + R+ +F GVH V + Sbjct: 1 MKLIQSPENPLIKEIKKIKETQRRK-----------------------IFFEGVHLVETS 37 Query: 61 LNNPSRKIFQLLATKNALARLD--WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + ++ T+ + + + PV + + I A Sbjct: 38 LVSDYVFTEKVFVTEKFIEKQKNFLEILQEKKIPVIIISEKVAKTISDTVTPQGVFA--I 95 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 A ++ + N +++ D + DP NIG I+R+A AF + ++ T S + Sbjct: 96 ADFKIKNINDLSNPTFIVIADRIQDPGNIGTIIRAAEAFGAEAVLVTHGTCNPFSNKALR 155 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 +++G++ + + + + + +G + + +A++ G E K Sbjct: 156 ASAGSIF-FLPVIKVTVKEIEEFVSKYGLNLVITDLKATISSFNMDFTKPLAIVFGNESK 214 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G+ + + + G ++LNV+ AA LY Sbjct: 215 GVSQDLRAIKHTSCKIPHKGKAESLNVAMAATAILYEILRQR 256 >gi|149183054|ref|ZP_01861507.1| RNA methyltransferase, TrmH family protein [Bacillus sp. SG-1] gi|148849235|gb|EDL63432.1| RNA methyltransferase, TrmH family protein [Bacillus sp. SG-1] Length = 253 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 53/278 (19%), Positives = 100/278 (35%), Gaps = 27/278 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M + K+ ++ K + + G H V A Sbjct: 1 MKYVQSAKNPQVKQWKKLQTK-------------------KERENSGTYIVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + ++L + W+ + V + + K V QG+ Sbjct: 42 LKYKG-VVQEILVKEGVDLPSSWNMD---EVSVIALS-EDAAKAVSATETSQGVFAVCQQ 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L+ + L++ D V DP N+G I+R+A A D I+ + + + + +SA Sbjct: 97 NQIGDLELQGKTFLML--DEVQDPGNLGTIIRTADAAGIDVIVLGEGTADLYNPKVLRSA 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P I+ + + + +S D ALILG EG G+ Sbjct: 155 QGSHFHLPIIKGNLSSWIDRLRTEEIPVYGTALENSAAYHTVNS-TDSFALILGNEGNGV 213 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P ++ ++ + G ++LNV+ AA + +Y + Sbjct: 214 SPSILDSTDQNLYVPIYGKSESLNVAIAAGILMYHLKK 251 >gi|254804971|ref|YP_003083192.1| putative RNA methyltransferase [Neisseria meningitidis alpha14] gi|254668513|emb|CBA05886.1| putative RNA methyltransferase [Neisseria meningitidis alpha14] Length = 261 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 51/282 (18%), Positives = 93/282 (32%), Gaps = 24/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + + + + Q L GVH + Sbjct: 1 MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L + + + + + + + +V + KI + + Sbjct: 43 LQSGRKPVGVYIPEAKMPSEEVRKLTAVLPEDRIFSVSDGILKKISS-LSCADDILALID 101 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L TL + +VLD V DP N+G +LRSA A ++ + + + S + ++ Sbjct: 102 IPLGGTLPDKGDC---VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRA 158 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 GA ++L L + F T E A + G EG G Sbjct: 159 GMGAHFLSGIYPQADLEIWLARYKGRVFATALREEKQAVLY-GEDLCGPTAWVFGNEGAG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + A + M ++LNV+ AA + L+ + Sbjct: 218 VGKAVLDRADKYVRIPMHDATESLNVAMAATICLFEQMRQRS 259 >gi|168487111|ref|ZP_02711619.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CDC1087-00] gi|183569960|gb|EDT90488.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CDC1087-00] Length = 246 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 102/276 (36%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ +N +L + V + + + QG+ Sbjct: 40 VQAGVT-IEKIFTLENYRDQLATFSQT------VWVSEDILLDLADSQ-TPQGIVAVVQR 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+++ + S + + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245 >gi|159029966|emb|CAO90345.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 288 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 70/283 (24%), Positives = 132/283 (46%), Gaps = 13/283 (4%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68 S++ F K + R + + + + +Q + LYG V A+ R++ Sbjct: 2 SDRPFRDKSDNRNSRRPSRPKTGPILAKSPAVTPENQEADDLLYGRRVVLTAMEE-ERQL 60 Query: 69 FQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 ++ + + + + V +D+I +A HQG+A + +P Sbjct: 61 NRIWVVNRLRYDPRYHTLLEKAKANGTVIDEVDDLRLDQIT-NKANHQGIAAQMSPYDYI 119 Query: 125 TL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 L ++++ + + DPHN+GAI+R+A A C G++ +R + ++ + Sbjct: 120 ELADLIEKAKGKSRHPVIVIAEGITDPHNLGAIIRTAEAMGCQGVVIPQRRAAGVTSTVM 179 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K A+GALE++P R+ NL AL+++ + GF G ++ + K L I L++G+EG Sbjct: 180 KVAAGALEYLPVARVVNLNRALEELKAAGFWLYGTAAKTGKSLHTINLTGAIGLVVGSEG 239 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +GL TQ++ + + + G +LN S AAA+ALY Sbjct: 240 EGLSLLTQKSCDELVSIPLAGKTPSLNASVAAAMALYEVYRQR 282 >gi|86137721|ref|ZP_01056297.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. MED193] gi|85825313|gb|EAQ45512.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. MED193] Length = 263 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 138/245 (56%), Gaps = 7/245 (2%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++++ E ++L+G+H V AL NP R+ +L+ T NA +L +A + V Sbjct: 15 KEQNKKAGGAETVWLFGLHAVRDALMNPQREKLRLIVTLNAQNKL-EEAIAASGVEPELV 73 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRS 153 P+ + + +VHQG ALE PL +L +++LD V DPHN+GAILRS Sbjct: 74 EPRKFNAPLDPNSVHQGAALEVKPLNWGSLSENCIGAEIPRVILLDRVTDPHNVGAILRS 133 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT---I 210 A F +I T+ +S E+ LAK+ASGALE PY+R+ NL D + ++ + G+ Sbjct: 134 AEVFGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADTITELQNMGYVVLGLD 193 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + + + + ++ +AL+LGAEG GLR KT+ET + + G +LNVSNAAA Sbjct: 194 GEAEQTIESCLEGRRDLPVALVLGAEGPGLRQKTKETVDHLVKIDAAGGFGSLNVSNAAA 253 Query: 271 VALYI 275 +ALY Sbjct: 254 IALYA 258 >gi|84687814|ref|ZP_01015684.1| tRNA/rRNA metyltransferase [Maritimibacter alkaliphilus HTCC2654] gi|84664186|gb|EAQ10680.1| tRNA/rRNA metyltransferase [Rhodobacterales bacterium HTCC2654] Length = 267 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 95/250 (38%), Positives = 140/250 (56%), Gaps = 9/250 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 +KS+ + E ++L+G+H V AL NP R +L+ TKNA +L DA + Sbjct: 11 KEKSKRAAAAETVWLFGLHAVRDALVNPRRDKLRLVVTKNAADKLA-DAIATGGIEPEVA 69 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAIL 151 P+ + +VHQG ALE PL L+ V ++++LD V DPHN+GAIL Sbjct: 70 DPRKFPVPLDPGSVHQGAALEVKPLDWGRLEEVCMGDGDRPPVVVLLDRVTDPHNVGAIL 129 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F +I TK +S E+ LAK+ASGALE PY+R++NL DA+ + G+ +G Sbjct: 130 RSAEVFGARAVIGTKHHSAPETGALAKTASGALERQPYLRVTNLADAMGTLKDMGYTVLG 189 Query: 212 LSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 L+ ++ + + +AL++GAEG GLR KT+ET ++ + +LNVSNA Sbjct: 190 LAGEADDDIADALSPLSGHAVALVMGAEGPGLRQKTRETCDALVKIPFAAEFGSLNVSNA 249 Query: 269 AAVALYITQN 278 AAV+LY Sbjct: 250 AAVSLYAVTR 259 >gi|318061734|ref|ZP_07980455.1| rRNA methylase [Streptomyces sp. SA3_actG] gi|318080743|ref|ZP_07988075.1| rRNA methylase [Streptomyces sp. SA3_actF] Length = 296 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 98/264 (37%), Gaps = 12/264 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + ++S + G V A + + ++ AT++A R Sbjct: 36 RSPRVVAARRLAKRS-FRGKERRFLAEGPQAVREA----AGHLVEVYATEDAARRHPELL 90 Query: 86 --NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 PV + + + + + L R +L+ VL HV D Sbjct: 91 DDARARGVPVLSASEEVLAAMADTVTPQGVIGLCRFLDTGFADVLARRPRLVAVLAHVRD 150 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N G +LR A A D +I T + +++ G+L H+P + + +A+ + Sbjct: 151 PGNAGTVLRCADAAGADAVILTDASVDVYNPKCVRASVGSLFHLPVVTGVPVEEAVAGLR 210 Query: 204 SWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 G + + L+ E A + G E GL +T+ A ++ + + G Sbjct: 211 GIGVRVLAADGAGADDLDDELDRGTMGGPSAWVFGNEAWGLPEETRALADAVVRVPLHGK 270 Query: 260 IKALNVSNAAAVALYITQN-HFAK 282 ++LN++ AAAV LY + + Sbjct: 271 AESLNLATAAAVCLYASARAQRGR 294 >gi|30018362|ref|NP_829993.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579] gi|206972200|ref|ZP_03233147.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH1134] gi|218232294|ref|YP_002364941.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus B4264] gi|296500926|ref|YP_003662626.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171] gi|29893902|gb|AAP07194.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579] gi|206732774|gb|EDZ49949.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH1134] gi|218160251|gb|ACK60243.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus B4264] gi|296321978|gb|ADH04906.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171] Length = 247 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 115/243 (47%), Gaps = 13/243 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ G + V AL + R I ++ + A ++ + ++ P + +D++ Sbjct: 3 SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKIILQHAPKKKLDQL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E HQG+ + A L+ ++LD + DPHN+G+I+R+A A Sbjct: 62 V--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G G + K Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 I L++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 180 TDYRNLDGTMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239 Query: 278 NHF 280 Sbjct: 240 RKR 242 >gi|295135708|ref|YP_003586384.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] gi|294983723|gb|ADF54188.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] Length = 244 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 109/241 (45%), Gaps = 13/241 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107 ++G+ V A+ + I ++ K L + + + VP + + K+ Sbjct: 7 IFGIRAVIEAIESG-ESIDKIFIQKGLSGELFSELKRTLSKGNYNISYVPQEKLYKLS-- 63 Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + HQG+ + +P+ L+ + ++LD +ND N GAI+R+A D Sbjct: 64 KGNHQGVVAKISPIAFKGLEETVEPILAKKEVPFFLLLDQINDVRNFGAIIRTAECCGVD 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 II ++ + +A K+++GA+ +IP +++++ DA+ + S G QT+ + + + Sbjct: 124 AIIIPEKGAAPINADTVKTSAGAVFNIPICKVNHIKDAVFYLQSSGIQTVAATEKTDNLI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A+I+G E KG+ P +T A L M G I +LNVS A LY Sbjct: 184 YNIDFKKPTAIIMGNEAKGISPSILKTIDHKAKLPMHGEIASLNVSVACGAFLYEVVRQR 243 Query: 281 A 281 Sbjct: 244 I 244 >gi|312796222|ref|YP_004029144.1| 23S rRNA Gm2251 methyltransferase [Burkholderia rhizoxinica HKI 454] gi|312167997|emb|CBW75000.1| 23S rRNA Gm2251 methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454] Length = 253 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 117/239 (48%), Gaps = 7/239 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + S I ++L ++ + A + + + G Sbjct: 11 VLYGFHAVTARLRHDSSSIEEVLYDATRRDRRMQDFLQAAQSSGVRLIAADDARLHGLAG 70 Query: 107 KEAVHQGLALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A T L+ L DA+ LL+VLD V DPHN+GA LR A A + Sbjct: 71 THRHQGVVARATDLPLAQNLAELLDALPGPALLLVLDGVTDPHNLGACLRVADAAGAHAV 130 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + + ++ AK ASGA E +PYI ++NL L+++ G IG + D+++ L Sbjct: 131 IAPRDRAVGLNSTAAKVASGAAETVPYITVTNLARTLRELKDAGVWVIGTAGDAQRSLYD 190 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +AL++GAEG+G+R T+ET + H+ M G + +LNVS A+ + L+ Sbjct: 191 IALDGPVALVMGAEGEGMRRLTRETCDDLMHIPMMGSVGSLNVSVASGICLFEAVRQRT 249 >gi|297193592|ref|ZP_06910990.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486] gi|197718130|gb|EDY62038.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486] Length = 317 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 70/280 (25%), Positives = 116/280 (41%), Gaps = 14/280 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQ 70 S + H K R + +K + +R + + + G + V AL + S Q Sbjct: 40 SARKGH-KKNRVANAQARKAATRRPVARRGGKGTSEMVVGRNPVFEALRDGVPASTLYVQ 98 Query: 71 LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128 + R + P +D++ HQGL L+ P + Sbjct: 99 QFIDNDERVREALQLATGRGNINIMEAPRPELDRLTNGL-NHQGLVLQVPPYEYAHPEDL 157 Query: 129 ------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L++ LD V DP N+GA++RS AF G++ +R + +A K+++G Sbjct: 158 AAAAFDDGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 217 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241 P R +NLT AL+ G +GL++D + + E + +++G+EGKGL Sbjct: 218 TAARTPVARATNLTRALESYQKAGLTVVGLAADGETEVGDLEALGGPLVIVVGSEGKGLS 277 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + + MPG ++LN AA V LY A Sbjct: 278 RLVGETCDYLVRIPMPGGAESLNAGVAAGVVLYEAAKRRA 317 >gi|300780462|ref|ZP_07090318.1| RNA methyltransferase [Corynebacterium genitalium ATCC 33030] gi|300534572|gb|EFK55631.1| RNA methyltransferase [Corynebacterium genitalium ATCC 33030] Length = 312 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 67/287 (23%), Positives = 123/287 (42%), Gaps = 24/287 (8%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ +H KL R RD S + E + G + V L+ Sbjct: 36 TPKAEDRVYHA--AHKRKLERQRRD----------SGRHEREEADLVVGRNPVVECLHAK 83 Query: 65 SRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 L+A + PV VP + +D + G +HQG+ L+ P Sbjct: 84 VPSEALLIAQGTGHDDRLSEAVQMANTRGIPVHEVPRRDLDNMTG-NTLHQGIGLKIQPY 142 Query: 122 LSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 + + + +VLD++ DP N+GA++RSA AF G+I +R S + Sbjct: 143 KYADVFDLIGGVRDRGETGMFVVLDNITDPRNLGAVIRSAAAFGGHGVIIPERRSAQVTG 202 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALIL 233 V ++++G +P R +NLT +++ G+ +GL + + L+ D + +++ Sbjct: 203 VAWRTSAGTAARLPVARATNLTRTIKEFKDNGYMVVGLDAGGEHTLDTFDGATDPVVIVV 262 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G+EGKG+ +E + + +++LN S AA V L Sbjct: 263 GSEGKGISRLVRENCDVIMSIPTADWVESLNASVAAGVVLSEFARQR 309 >gi|149007448|ref|ZP_01831091.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP18-BS74] gi|225861791|ref|YP_002743300.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae Taiwan19F-14] gi|147761020|gb|EDK67989.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP18-BS74] gi|225727319|gb|ACO23170.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae Taiwan19F-14] gi|332071951|gb|EGI82439.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA17545] Length = 246 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 102/276 (36%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ +N +L + V + + + QG+ Sbjct: 40 VQAGVT-IEKIFTLENYRDQLATFSQT------VWVSEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+++ + S + + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245 >gi|240136836|ref|YP_002961303.1| rRNA methylase [Methylobacterium extorquens AM1] gi|254558711|ref|YP_003065806.1| rRNA methylase [Methylobacterium extorquens DM4] gi|240006800|gb|ACS38026.1| rRNA methylase [Methylobacterium extorquens AM1] gi|254265989|emb|CAX21739.1| rRNA methylase [Methylobacterium extorquens DM4] Length = 268 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 109/247 (44%), Positives = 150/247 (60%), Gaps = 1/247 (0%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 + ++ +++ LYG H VS AL N R +LLAT+NALARL +A + P Sbjct: 17 RPRTQPPGPAAREGRDHVVLYGWHPVSQALANAGRHFHRLLATENALARL-KEAGIELPI 75 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 + V P ID+++G +AVHQGL E PL +P LDA+ + LL+ LD + DPHN+GAI+ Sbjct: 76 EPEMVRPSAIDRLLGPDAVHQGLYAEAEPLAAPALDAMPDDALLLALDQITDPHNVGAIV 135 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A AF I+TT R+SP+ + VLAKSASG LEH+P + + NL +AL + GF IG Sbjct: 136 RTAAAFGVTAIVTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRIG 195 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 L SD+ L+ L+LGAEGKGLR +T E + + G I++LNVSNAAA+ Sbjct: 196 LDSDAGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATGAIRSLNVSNAAAI 255 Query: 272 ALYITQN 278 LY Sbjct: 256 TLYALTR 262 >gi|254475163|ref|ZP_05088549.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria sp. R11] gi|214029406|gb|EEB70241.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria sp. R11] Length = 294 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 142/245 (57%), Gaps = 7/245 (2%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++++ + E ++L+G+H V AL NP+R+ +L+ T NA +L DA + + Sbjct: 47 KEQAKKAASAETVWLFGLHAVRDALLNPNREKLRLMVTPNAETKLS-DAIAQSGIEAEVI 105 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTL---DAVRNSQLLMVLDHVNDPHNIGAILRS 153 P+ + + K++VHQG LE PL L + +++LD V DPHN+GAILRS Sbjct: 106 DPRKFNPPIDKQSVHQGAVLEVKPLNWGGLAENCIGAEAPRVLLLDRVTDPHNVGAILRS 165 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A +I T+ S E+ LAK+ASGALE PY+R+ NL D + ++ GF +GL Sbjct: 166 AEVLGASAVIGTRHNSAPETGALAKTASGALERQPYLRMRNLADTIVELQRMGFLVLGLD 225 Query: 214 SDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++++ +E K D +AL+LGAEG GLR KT+ET + + G +LNVSNAAA Sbjct: 226 GEAEQTIETVLEGRKGDPVALVLGAEGPGLRQKTKETVDHLVKIDFAGGFGSLNVSNAAA 285 Query: 271 VALYI 275 +ALY Sbjct: 286 IALYA 290 >gi|218528187|ref|YP_002419003.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium chloromethanicum CM4] gi|218520490|gb|ACK81075.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium chloromethanicum CM4] Length = 268 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 109/247 (44%), Positives = 150/247 (60%), Gaps = 1/247 (0%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 + ++ +++ LYG H VS AL N R +LLAT+NALARL +A + P Sbjct: 17 RPRTQPPGPAAREGRDHVVLYGWHPVSQALANAGRHFHRLLATENALARL-KEAGIELPI 75 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 + V P ID+++G +AVHQGL E PL +P LDA+ + LL+ LD + DPHN+GAI+ Sbjct: 76 EPEMVRPSAIDRLLGPDAVHQGLYAEAEPLAAPALDAMPDDALLLALDQITDPHNVGAIV 135 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A AF I+TT R+SP+ + VLAKSASG LEH+P + + NL +AL + GF IG Sbjct: 136 RTAAAFGVTAIVTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRIG 195 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 L SD+ L+ L+LGAEGKGLR +T E + + G I++LNVSNAAA+ Sbjct: 196 LDSDAGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATGAIRSLNVSNAAAI 255 Query: 272 ALYITQN 278 LY Sbjct: 256 TLYALTR 262 >gi|159900290|ref|YP_001546537.1| RNA methyltransferase [Herpetosiphon aurantiacus ATCC 23779] gi|159893329|gb|ABX06409.1| RNA methyltransferase, TrmH family, group 3 [Herpetosiphon aurantiacus ATCC 23779] Length = 246 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 13/247 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDK 103 LYG + V AL RK+ +LL + + V V +DK Sbjct: 1 MELLYGRNAVLEALRANRRKLGRLLIADGIKEGESMQAINTIARERRMQVAKVQRSELDK 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 A HQG+ALE +D L+++ DH+ DP NIG ++R+A Sbjct: 61 RTA-GANHQGIALECGAYPYVEVDDIIELARERGEQPLILIFDHLQDPQNIGTLMRTAEI 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSD 215 GII R S S + + +++GA+EH+ +I+N+ ++ + + + Sbjct: 120 VGAHGIIFPDRRSASITPAVINASAGAVEHLYVAQITNIAQTIKHLQEYNIWVAGVEDDE 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ +AL++GAEG GL T+E + L M G + +LN + A ++ LY Sbjct: 180 RAVDFDKANLRGALALVIGAEGPGLARLTRERCDLLVRLPMRGNVASLNAATAGSIILYH 239 Query: 276 TQNHFAK 282 K Sbjct: 240 AWRVREK 246 >gi|94986121|ref|YP_605485.1| RNA methyltransferase TrmH, group 3 [Deinococcus geothermalis DSM 11300] gi|94556402|gb|ABF46316.1| RNA methyltransferase TrmH, group 3 [Deinococcus geothermalis DSM 11300] Length = 246 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 13/241 (5%) Query: 50 FLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 LYG + V AL + ++ + A R + ++ P +D++ G Sbjct: 2 LLYGRNPVLEALRDGRVTEVLVARGVEEAFVR----SLKAFDVRLRFAPRIELDQLAG-T 56 Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ E L T+D L+++LD + DP N GAI+RSA G Sbjct: 57 TQHQGVIAEVEDLAWATVDDILDRAEARGEDLLIVLLDGITDPRNFGAIIRSAEVLGAHG 116 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S S V+ K+A+GA ++P + NL + + G G + ++ + + Sbjct: 117 VVVEERRSAPLSPVVVKTAAGATSYLPVAQTKNLPRLIDALKEDGVWIYGAAGEAAQDIG 176 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + K+AL++GAEG+GLR +E ++ + G +++LN S AA + LY Sbjct: 177 RTDLSGKVALVIGAEGEGLRRLVREKCDALVRIPTRGQVQSLNASVAAGILLYEAARARD 236 Query: 282 K 282 K Sbjct: 237 K 237 >gi|302530721|ref|ZP_07283063.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4] gi|302439616|gb|EFL11432.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4] Length = 318 Score = 123 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 69/274 (25%), Positives = 120/274 (43%), Gaps = 14/274 (5%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNN--PSRKIFQLLATK 75 A+ R H+ Y+ + N++ + + + G + V AL P ++ L Sbjct: 40 KAEDRPGHKAYRAANAANKRDQARQKKADRPELIAGRNPVVEALRADVPGTALYVALNID 99 Query: 76 -NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------ 128 + + +P + +D+ A+HQGL L+ P D Sbjct: 100 IDDRVNEAVRLAGDKGISILEIPREELDRKT-NRAMHQGLGLQVPPFEYAHPDDLMQAAR 158 Query: 129 -VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 N+ L + LD V DP N+GA++RSA AF G++ +R S +AV ++++G + Sbjct: 159 DSGNTPLFVALDGVTDPRNLGAVIRSAAAFGAQGVLLPERRSAGMTAVAWRTSAGTAAKL 218 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQE 246 P +NLT L+ S G +GL +D ++ D + ++LG+EG+GL +E Sbjct: 219 PIAVATNLTRQLRAWASKGLMIVGLDADGTVDIDALELAADPLVVVLGSEGRGLSRLVRE 278 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T + + M +++LN S AA V L Sbjct: 279 TCDATVSIPMAAGVESLNASVAAGVLLAEVARRR 312 >gi|86749323|ref|YP_485819.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris HaA2] gi|86572351|gb|ABD06908.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris HaA2] Length = 273 Score = 123 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 113/235 (48%), Positives = 152/235 (64%), Gaps = 1/235 (0%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 +R LYG HTV+AAL NP+R+I +LL T+NA +L D N+ V P Sbjct: 30 ARERDPDGPAILYGWHTVTAALANPARRIRKLLLTENAARKLA-DENINTRITPDIVRPG 88 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 ID+ +G +AVHQG+ E PL SP +D + +++VLD + DPHN+GAI+RSA AF+ Sbjct: 89 EIDQRLGPDAVHQGMLAEVDPLESPRIDTLPEDGIVLVLDQITDPHNVGAIMRSAAAFAV 148 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 I+TT R+SP + VLAKSASGALE +P + ++NL AL ++ G+ T+GL S+ Sbjct: 149 KAIVTTARHSPEATGVLAKSASGALELVPLVLVTNLARALTELEDRGYLTVGLDSEGSAD 208 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L +AL+LGAEGKGLR T+ET +A L MPG IK+LNVSNAAA+ALY Sbjct: 209 LAAVELRQPLALVLGAEGKGLRQLTRETCNVVARLDMPGAIKSLNVSNAAALALY 263 >gi|325204176|gb|ADY99629.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M01-240355] Length = 261 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 52/283 (18%), Positives = 95/283 (33%), Gaps = 26/283 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + + + + Q L GVH + Sbjct: 1 MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + + + + + + + + +V + KI + + Sbjct: 43 LQSGGKPL-GVYIPEGKMPSEEIRRLRAVVPEGRIFSVSDGILKKISS-LSCADDILALI 100 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L TL + +VLD V DP N+G +LRSA A ++ + + + S + + Sbjct: 101 DIPLGGTLPDKGDC---VVLDGVQDPGNVGTVLRSAAAAGVGTVVLDRGCADAWSPKVLR 157 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + GA ++L L + F T E + A + G EG Sbjct: 158 AGMGAHFLSGIYPQADLEIWLARYKGRVFATALREEKQAVLY-GEDLCEPTAWVFGNEGA 216 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G+ + A + M ++LNV+ AA + L+ A Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRA 259 >gi|148244642|ref|YP_001219336.1| RNA methyltransferase [Candidatus Vesicomyosocius okutanii HA] gi|146326469|dbj|BAF61612.1| RNA methyltransferase, TrmH family [Candidatus Vesicomyosocius okutanii HA] Length = 247 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 114/244 (46%), Gaps = 9/244 (3%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTID 102 +++ + G H + A L NP I + K RL+ + ++ +D Sbjct: 2 SKSIIITGFHAIQAQLKFNPKYLIKIFILNKRCDKRLNTLILEINNFDINIQQCTKVQLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVA 156 K+ + A P+L + + L+++LD + DP N+GA LRSA A Sbjct: 62 KLSNYQTHQGIAAEILLPILPNQCELITYVSKLDNASLILILDSIQDPRNLGACLRSANA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I K S S SA++ K+++GA+ I +++NL+ ++ + IGL S + Sbjct: 122 AGVDCVIINKDGSASISALVHKTSAGAINQIKIFQVTNLSRTIKALQQQNIWVIGLDSSA 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + Q A+I+G+EG GL+ T+++ +A + M G +++LNVS A + L+ Sbjct: 182 NTLIYQIDLTTPNAIIMGSEGFGLKRLTKQSCDQLAKIPMQGKVESLNVSVATGITLFEI 241 Query: 277 QNHF 280 Sbjct: 242 NRQR 245 >gi|325297905|ref|YP_004257822.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM 18170] gi|324317458|gb|ADY35349.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM 18170] Length = 268 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 50/271 (18%), Positives = 97/271 (35%), Gaps = 4/271 (1%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67 + E+I + + + + ++R + + AL+ Sbjct: 2 EKERIIEITSLEQPGVE----LFGALTEAQLRNRLEPEKGVFIAESPKVIRVALDAGYEP 57 Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 + L K+ PV T + + ++ G L P + + Sbjct: 58 LALLCERKHLAGDAADILARCPDIPVYTGGRELLARLTGYTLTRGVLCAMRRPPVKSVEE 117 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++ ++V+ V D NIGAI RSA A DG++ T + + + G++ I Sbjct: 118 VCGGARRIVVIHGVTDTTNIGAIFRSAAALGIDGVLLTPDSCDPLNRRAVRVSMGSVFLI 177 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P+ AL+++ + ++AL++G EG GL T Sbjct: 178 PWTWADAPLAALRRLGFRTAALALSDDSVPLDTPALKQEPRLALVMGTEGDGLPHATIAE 237 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + M + +LNV+ A+AVA + + Sbjct: 238 ADYTVRIPMAHGVDSLNVAAASAVAFWELRR 268 >gi|311741771|ref|ZP_07715582.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272] gi|311314777|gb|EFQ84683.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272] Length = 314 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 60/277 (21%), Positives = 115/277 (41%), Gaps = 18/277 (6%) Query: 20 YAKLRRNHRDYKKMQSFNQK--SRHTSQPEN--LFLYGVHTVSAALNNPSRKIFQLLATK 75 A+ R NH+ YK + ++ +R + + ++ G ++V L I L + Sbjct: 39 RAEERPNHKVYKMKNAATKREAARPRRKTGDVAEWVAGRNSVLELLKAT-VPIHGLYVAE 97 Query: 76 ----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--- 128 + R + + + +DK+ G AVHQG+A + Sbjct: 98 GTERDERMREIFKLAADQHVSLLEIGRVELDKLTG-GAVHQGIAAKLNAYDYADPRDLLA 156 Query: 129 ----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L+++LD V DP N+GA++RSA F G++ +R + +A K+++GA Sbjct: 157 LAAERGEPALIVMLDGVTDPRNLGAVIRSASGFGAHGVVIPERRAAQITAAAWKTSAGAA 216 Query: 185 EHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 +P R++N + + + ++ + + +++G+EGKGL Sbjct: 217 ARVPVARVTNLTRTLKELQEEGLMVIGLAADGDVELPSSQMLDGPVVVVIGSEGKGLSRL 276 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ET + + M +++LN AA +ALY Sbjct: 277 VGETCDELVSIPMSTGLESLNAGVAAGIALYAIARQR 313 >gi|254502818|ref|ZP_05114969.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11] gi|222438889|gb|EEE45568.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11] Length = 280 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 99/273 (36%), Gaps = 8/273 (2%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 +KI ++K ++ K+++ + + +Q G+ + AL+ + Sbjct: 8 QKIGAVK----QITSHSNPIVKEIKGLVAQRKLRTQSGLFVAEGLKLATDALSAGWGVRY 63 Query: 70 QLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 L + N A+ + V + + K+ + + +LS Sbjct: 64 LALGPEARDNPAAQKAAATAKARGALILEVSTAVMSAMTRKDNPQMVVGVYEQNILSARD 123 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + + + + LD V DP N+G I+R+ A G++ + + ++ G+L H Sbjct: 124 IDPQGTTVWVALDRVRDPGNLGTIIRTVDAVGGSGVMLVGDCTDPFAVEAVRATMGSLFH 183 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +P +++ + W L++G E KGL T Sbjct: 184 VPLAKMTKE-EFKALAKDWPGTVAATHLKGSVDYRTPDYKQPALLVMGNEQKGLEDDTAA 242 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ + G +LN++ A ++LY + + Sbjct: 243 ACRTLIRIPQVGEADSLNLAVATGISLYEIRRN 275 >gi|121634880|ref|YP_975125.1| putative RNA methyltransferase [Neisseria meningitidis FAM18] gi|120866586|emb|CAM10337.1| putative RNA methyltransferase [Neisseria meningitidis FAM18] gi|325142380|gb|EGC64789.1| RNA methyltransferase, TrmH family [Neisseria meningitidis 961-5945] gi|325198323|gb|ADY93779.1| RNA methyltransferase, TrmH family [Neisseria meningitidis G2136] Length = 261 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 95/283 (33%), Gaps = 26/283 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + + + + Q L GVH + Sbjct: 1 MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + + + + + + + +V + KI + + Sbjct: 43 LQSGGMPV-GVYIPEGKMPSEEIRRLRAVVPEGRIFSVSDGILKKISS-LSCADDILALI 100 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L TL + +VLD V DP N+G +LRSA A ++ + + + S + + Sbjct: 101 DIPLGGTLPDKGDC---VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLR 157 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + GA + I + + L + + L E + A + G EG Sbjct: 158 AGMGAHF-LSGIYPQADLEIWLASYKGRVFATALREEKQVVLYGEDLCEPTAWVFGNEGA 216 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G+ + A + M ++LNV+ AA + L+ + Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRS 259 >gi|255319722|ref|ZP_05360930.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter radioresistens SK82] gi|262379996|ref|ZP_06073151.1| SpoU rRNA methylase [Acinetobacter radioresistens SH164] gi|255303251|gb|EET82460.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter radioresistens SK82] gi|262298190|gb|EEY86104.1| SpoU rRNA methylase [Acinetobacter radioresistens SH164] Length = 251 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 105/241 (43%), Gaps = 12/241 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 YGVH V + L ++ L K RL L V+ +++K+ G Sbjct: 8 YGVHAVESLLELEPERVLTLFTLKGREDQRLQKILELAEPFGISVQKASRDSLEKLAGLP 67 Query: 109 AVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ P L LL+ LD V DPHN+GA +R+A A + Sbjct: 68 -FHQGVVAAVRPHPVMNEKDLEQLLEQTPDVLLLALDQVTDPHNLGACIRTAAAMGVQAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK--PL 220 I + S S + K A+G E + +I+++NL L +M + + ++ PL Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAQMKEHSQVRVIGTMLDEQALPL 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +Q I +++GAE GLRP TQ ++ M G +++LNVS A +ALY Sbjct: 187 QQCDLTGPIVIVMGAEDTGLRPITQAQCDHKVYIPMAGNLQSLNVSVATGMALYEACRQR 246 Query: 281 A 281 Sbjct: 247 N 247 >gi|189459984|ref|ZP_03008769.1| hypothetical protein BACCOP_00618 [Bacteroides coprocola DSM 17136] gi|189433287|gb|EDV02272.1| hypothetical protein BACCOP_00618 [Bacteroides coprocola DSM 17136] Length = 296 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 92/251 (36%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + + ++R + + AL+ + + L K+ Sbjct: 46 FGTLTEAQLRNRIDPEKGIFIAESPKVIRVALDAGYQPLALLCEKKHIEGDAADIILRAG 105 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + + G L P + R+++ + V+ V D NIGA Sbjct: 106 DIPVYTGSRELLASLTGYTLTRGVLCAMRRPAPRTPEEVCRDARRVAVIHGVVDTTNIGA 165 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D I+ + + + + G++ +P+ + +L++M Sbjct: 166 IFRSAAALGIDAILLSPDSCDPLNRRAVRVSMGSVFLVPWTWLPRPVSSLREMGFCTASL 225 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + + ++A+++G E GL + + + + M + +LNV+ A+ Sbjct: 226 ALTDRSVPIDYPELKEIPRLAIVMGTEDDGLPAEVLSESDYVVRIPMWHGVDSLNVAAAS 285 Query: 270 AVALYITQNHF 280 AVA + + Sbjct: 286 AVAFWELRARR 296 >gi|197294706|ref|YP_001799247.1| tRNA/rRNA methyltransferase [Candidatus Phytoplasma australiense] gi|171854033|emb|CAM12006.1| tRNA/rRNA methyltransferase [Candidatus Phytoplasma australiense] Length = 233 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 117/229 (51%), Gaps = 5/229 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 F+YG +T+ A+ RKI+QL N P + V + + +V K+ Sbjct: 2 FIYGKNTIKEAIKA-KRKIYQLYLDANFKDNSFISFLKLSNQPYQLVDKKKLFDLV-KQK 59 Query: 110 VHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 HQG+ + LD+ Q ++LD ++DPHN+GAILR+ A DG+I +K Sbjct: 60 NHQGVVAQVESYQFYDLDSFLSFEKKQRFLILDAIHDPHNLGAILRTVEACGFDGVIMSK 119 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 ++ +A ++K A GALE++ +SNL + K+ IG S++ + L + N Sbjct: 120 KHQVPLNATVSKIACGALEYVKVFLVSNLHQTILKLQKQQVLIIGTDSNATQTLTKIPCN 179 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +A+I+G EG G+R ++ + + M G I +LNVS A+A+ +Y Sbjct: 180 QSLAIIVGNEGDGIRYLLKQKCDLLVKIPMKGKINSLNVSVASALMMYA 228 >gi|260430943|ref|ZP_05784914.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter lacuscaerulensis ITI-1157] gi|260414771|gb|EEX08030.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter lacuscaerulensis ITI-1157] Length = 257 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 97/255 (38%), Positives = 145/255 (56%), Gaps = 9/255 (3%) Query: 31 KKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 KK + +K + ++L+G+H V AL NP R+ +L+ T+NA +L DA Sbjct: 2 KKPKWVIEKEQARKAAGSETVWLFGLHAVRDALMNPKRQKLRLIVTRNAQDKLA-DAIAA 60 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL---DAVRNSQLLMVLDHVNDPH 145 + V + + +VHQG+ALE PL L R + +++LD V DPH Sbjct: 61 SGIEPELVDARRFTAPIDPGSVHQGVALEVKPLEWGGLAENCIGRENPRVLLLDRVTDPH 120 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAILRSA +I T+ +S E+ LAK+ASGALE PY+R+ NL DA+ ++ + Sbjct: 121 NVGAILRSAEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRVRNLADAIVELQNM 180 Query: 206 GFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF +GL ++ + +E ++ +AL+LGAEG GLR KT+ET + + G + Sbjct: 181 GFLVLGLDGEADQTIEAALDGKRDRPVALVLGAEGPGLRQKTKETVDQLVKIDAAGGFGS 240 Query: 263 LNVSNAAAVALYITQ 277 LNVSNAAA+ALY +Q Sbjct: 241 LNVSNAAAIALYASQ 255 >gi|312143805|ref|YP_003995251.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium sp. 'sapolanicus'] gi|311904456|gb|ADQ14897.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium sp. 'sapolanicus'] Length = 267 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 102/285 (35%), Gaps = 24/285 (8%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 +IS +++KI L + +SR + L G + AA Sbjct: 3 EIISSSQNDKIKYLNKLY-------------------RSRTRRKEGVFVLEGKRLIEAAS 43 Query: 62 N--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 ++F A A D L + + V + + + QG+ Sbjct: 44 AGGADFERVFLSPAFFKADKNKDLIDKLQNRVSLDLVSEELLKE-TAATVNPQGIIAIVK 102 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + + + +++LD + DP N+G ++R+A A + +I K + + ++ Sbjct: 103 EPNYSSEKFFKTADKILLLDRIQDPGNMGTMIRTAAAAGFEAVIALKGSVDIYNQKVIRA 162 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEG 237 + G + IP + + + + + ++K + K+ L++G E Sbjct: 163 SMGGIFAIPIWQKVSKNEFKKDLKDRAADFELLAADIKAEKYHFEHQYQQKLILMIGNEA 222 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 GL A + + G +++LN + AAAV + K Sbjct: 223 NGLAEDLLNIADMKVKIPLKGEMESLNAAIAAAVISFEILAQQLK 267 >gi|308389284|gb|ADO31604.1| putative RNA methyltransferase [Neisseria meningitidis alpha710] Length = 261 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 53/283 (18%), Positives = 98/283 (34%), Gaps = 26/283 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + + + + Q L GVH + Sbjct: 1 MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + + + + + + + + +V + KI + Sbjct: 43 LQSGGKPV-GVYIPEGKMPSEEIRRLRAVVPEGRIFSVSDGILKKISS-LTCADDVLALI 100 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + L A + +VLD V DP N+G +LRSA A ++ K + + S + + Sbjct: 101 DIPDAGALPAGGDC---VVLDGVQDPGNVGTVLRSAAAAGIGVVVLGKGCADAWSPKVLR 157 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + GA + ++L L F T L + + L E + A + G EG Sbjct: 158 AGMGAHFLLDIYSQADLEIWLASYKGRVFATA-LREEKQVVLYGEDLCEPTAWVFGNEGA 216 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G+ + A + M ++LNV+ AA + L+ + Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRS 259 >gi|209523281|ref|ZP_03271837.1| RNA methyltransferase, TrmH family, group 3 [Arthrospira maxima CS-328] gi|209496432|gb|EDZ96731.1| RNA methyltransferase, TrmH family, group 3 [Arthrospira maxima CS-328] Length = 304 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 81/286 (28%), Positives = 127/286 (44%), Gaps = 19/286 (6%) Query: 5 SKKKSEKIF-SLKDSHYAKLRRN--HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 S K+ S K H + + H + + S T PE +YG HTV AAL Sbjct: 11 SGPNRGKVKPSSKPPHSPREDKPAIHP---RRRDRPVASAETEPPEEDLIYGRHTVLAAL 67 Query: 62 NNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 N R + ++ + + V Q +D+I + A HQG+ + Sbjct: 68 ENG-RSLNRVWVISQLRSDTRFQPLLQEAKAKGAIVDGASYQRLDQIT-RGANHQGIVAQ 125 Query: 118 TAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 P L + + +L+ +D + DPHN+GAI+R+A A G+I +R + Sbjct: 126 VTPYKYWDLTTLITQAKSANSQPVLVAVDGITDPHNLGAIVRTAEAIGAQGLILPQRRAV 185 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 +A + K A+GALE P R+ NL +L ++ S GF G + +PL I Sbjct: 186 GINATVMKVAAGALETFPVARVINLNRSLTELKSAGFWIYGTVAGEFQPLYNANLTGAIV 245 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L++G+EG+GL E + + + G I +LNVS A +ALY Sbjct: 246 LVVGSEGEGLSHAIAENCDVLLSIPLQGTIPSLNVSVATGMALYEI 291 >gi|320095424|ref|ZP_08027101.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319977617|gb|EFW09283.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 325 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 75/285 (26%), Positives = 121/285 (42%), Gaps = 15/285 (5%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 + K ++ + +H K RR R ++ + KS + + G + V+ A Sbjct: 38 TPKAEDRPYHP--AHKRKARREARQAQEAAIARARAKSSIRVPAGHELIAGRNPVAEAAR 95 Query: 63 NP--SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 ++F L K+ PV V + +D + HQG+A+E Sbjct: 96 AGVPIERVFVLDNVKDDRVEEVIRLASSMGAPVFEVTRRDLDVATDGAS-HQGVAIEVRG 154 Query: 121 LLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 +D LL+ LD V DPHN+GA+LRSA AF DG+I +R S + Sbjct: 155 YEYTPVDDLIAGSVQQVGHPLLVALDQVTDPHNLGAVLRSAGAFGGDGVIIPERRSAGVT 214 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232 K ++GA +P R +NL AL+ GF +GL PL + + L+ Sbjct: 215 TAAWKVSAGAAARVPVARATNLVRALEDCKRAGFFVVGLDGGGDAPLRGLPLADGPLVLV 274 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 GAEG GL ++T + + + +++LN + A +ALY Sbjct: 275 AGAEGTGLSRLVRQTCDQIVSIPISSAVESLNAAVATGIALYEVA 319 >gi|295395440|ref|ZP_06805639.1| TrmH family rRNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294971762|gb|EFG47638.1| TrmH family rRNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 330 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 53/285 (18%), Positives = 103/285 (36%), Gaps = 31/285 (10%) Query: 28 RDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSR------------------- 66 K+++ + K ++ + G V AL + + Sbjct: 44 PQSKRLREAAKLTKRSWRTKMGRFIVEGPQAVREALTHQATNKPHRATVGVEDGQTRSRP 103 Query: 67 --KIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 I + AT +A R P++ + ++ +A+ Sbjct: 104 TGAILDVWATSDAAERHPDILEHAQAANIPIREATSAALAELTDTVTSQDIVAIVEHIDT 163 Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 ++S+L++VL V DP N G +LR A A D +I T + ++ +G Sbjct: 164 ELPQAITKDSKLVVVLSQVRDPGNAGTVLRVADAAGADSVIFTNSSVDVYNPKTVRATAG 223 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN------DKIALILGAE 236 +L H+P + L + ++ + G Q + + + A + G E Sbjct: 224 SLFHLPVVTGVGLPEVVELARARGLQVLAADAHPPAHDLHVPWDTGLDLSQPTAWVFGNE 283 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 GL K ++ A S + + G ++LN++ AAAV LY + + Sbjct: 284 AWGLPEKDRKQADSAVAIPLYGQAESLNLATAAAVCLYESARNHN 328 >gi|256546104|ref|ZP_05473457.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23SrRNA 2'-O-methyltransferase) [Anaerococcus vaginalis ATCC 51170] gi|256398221|gb|EEU11845.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23SrRNA 2'-O-methyltransferase) [Anaerococcus vaginalis ATCC 51170] Length = 237 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 119/233 (51%), Gaps = 7/233 (3%) Query: 51 LYGVHTVSAALNNPSR-KIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 +YG +V ++ K +L K +L + P+ KI G Sbjct: 4 IYGRKSVLETIDAGENIKKAHILNNKGKNHKLIDKIINKLEDENVPIFYEDKDYFSKISG 63 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 HQG+ +E LD +++ + LM+LD + DPHN+GAI+RSA AF DGII ++ Sbjct: 64 ---NHQGVEIEVEDYKYKDLDDLKDKKRLMILDQIEDPHNLGAIIRSAEAFGFDGIIISE 120 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R S ++ + K+++GA+ +I + N+ A++++ F GL+ +++ + Q Sbjct: 121 RRSAKVNSTVYKTSAGAINNIDIAMVKNINRAIKEIKKENFWVYGLAGEAEGDITQTDLT 180 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 KIAL++G EGKGL +E + + M G I +LN S A+A+A+Y + Sbjct: 181 GKIALVVGNEGKGLSRLVRENCDGLIKIPMLGKINSLNASVASAIAIYESLRQ 233 >gi|331265656|ref|YP_004325286.1| rRNA/tRNA methylase, putative [Streptococcus oralis Uo5] gi|326682328|emb|CBY99945.1| rRNA/tRNA methylase, putative [Streptococcus oralis Uo5] Length = 246 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 54/274 (19%), Positives = 106/274 (38%), Gaps = 31/274 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A ++ +L P V + + + + QG+ Sbjct: 40 VQAGVT-IEKIFALESYRDQL---VAFPQTI---WVSEEILRDLADTQ-TPQGIVAVIQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G ++R+A A G+I + + + S +S Sbjct: 92 EEVGLPDLHQGKFLFL--EDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+ + + S+ S K + + AL++G EG+G+ Sbjct: 150 QGSHFHLPIYRLPLASFVEEAKKSYLPILATTLSRESKDYRELSPLENFALVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SSVMAESADQLVHISMKGRAESLNVAVAAGILMF 243 >gi|15901796|ref|NP_346400.1| spoU rRNA methylase family protein [Streptococcus pneumoniae TIGR4] gi|111658860|ref|ZP_01409481.1| hypothetical protein SpneT_02000031 [Streptococcus pneumoniae TIGR4] gi|14973480|gb|AAK76040.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae TIGR4] gi|301802651|emb|CBW35417.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae INV200] Length = 246 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 102/276 (36%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNTKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ +N +L + V + + + QG+ Sbjct: 40 VQAGVT-IEKIFTLENYRDQLATFSQT------VWVSEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+++ + S + + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245 >gi|332523947|ref|ZP_08400199.1| RNA methyltransferase, TrmH family [Streptococcus porcinus str. Jelinkova 176] gi|332315211|gb|EGJ28196.1| RNA methyltransferase, TrmH family [Streptococcus porcinus str. Jelinkova 176] Length = 245 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 54/274 (19%), Positives = 102/274 (37%), Gaps = 32/274 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS K + I K + K R++ + + G H A Sbjct: 1 MK-ISSKANPIIKQSKKLLHKKYRKD---------------------SYLIEGWHLFEEA 38 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + ++ + R+ V V P+ + ++ QG+ E Sbjct: 39 -KKAQVSFLHIFVLEDYVDRV------AADGKVIVVTPEVLKELTDSP-TPQGIVAEVKQ 90 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + LL+ + V DP N+G ++R+A A DG++ +++ + + +S Sbjct: 91 EQLDLPSIGKGKYLLL--EDVQDPGNLGTMIRTADAAGFDGVLLSEKSADIFNQKTLRSM 148 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP R S+ +Q L++G EG+G+ Sbjct: 149 QGSHYHIPVWRTDIYAFCETMKSKEMPILATTLSEQSIDYKQLGTLTDFILVMGNEGQGI 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K E ++ + H+ MPG ++LNV+ AA + ++ Sbjct: 209 STKMAEHSSQLVHISMPGQAESLNVAVAAGILIF 242 >gi|297183499|gb|ADI19629.1| rRNA methylases [uncultured delta proteobacterium HF0770_45N15] Length = 280 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 82/252 (32%), Positives = 125/252 (49%), Gaps = 8/252 (3%) Query: 34 QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPF 91 Q +H + + +LYG H+V AAL + RK+ L + RL +A Sbjct: 6 QRRVNSWKHQQEDQLEWLYGTHSVLAALRHKRRKLVGLHLKDSGQGRLQALVEAAKKSGV 65 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAP-----LLSPTLDAVRNSQLLMVLDHVNDPHN 146 P+ + +G E+VHQG+AL+ P L+ VLD V DPHN Sbjct: 66 PIHYEASRWFSDNLG-ESVHQGVALQCGPLSLLDEAELPPPNSGKPNLVFVLDGVEDPHN 124 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI+R+ F + K + + S V AK++ GALE +R++NL L++ G Sbjct: 125 LGAIVRTLGFFGVSAVAIPKDRAAALSPVAAKASVGALEWFSVVRVTNLHRFLERQKKRG 184 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + +GL S+ PL Q + + ++LGAEG GLRP T+ T + + +++LNVS Sbjct: 185 YWVVGLDGASRNPLRQLEWDRPLMVVLGAEGSGLRPLTKRTCDWLVSIPGTPEVESLNVS 244 Query: 267 NAAAVALYITQN 278 NAAAV Y +N Sbjct: 245 NAAAVTCYHLRN 256 >gi|163786199|ref|ZP_02180647.1| tRNA/rRNA methyltransferase, TrmH family protein [Flavobacteriales bacterium ALC-1] gi|159878059|gb|EDP72115.1| tRNA/rRNA methyltransferase, TrmH family protein [Flavobacteriales bacterium ALC-1] Length = 244 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 108/240 (45%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++G+ + A+ + K+F + L + VP + ++++ Sbjct: 7 IFGIRAIIEAIKSGKTIDKVFMQKGLRGELFQELEHLLRSESINSSYVPVEKLNRLT--R 64 Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG + +P+ +D + L ++LD ++D N GAI+R+A +G Sbjct: 65 GNHQGAVAQISPIAFHNIDDLVMQVIESGKTPLFLLLDQLSDVRNFGAIVRTAECTGVNG 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II K+ + K+++GA+ IP ++ ++ DA+ M S G + I + + + Sbjct: 125 IIIQKKGGAPINGDTIKTSAGAIFKIPVCKVDHIKDAVFHMQSSGIKVIAATEKANDFVY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + A+I+G+EG+G+ P + + A L + G I++LNVS A LY + Sbjct: 185 DVSFKEPCAIIMGSEGRGINPSVLKVVDAKAKLPILGEIESLNVSVACGAFLYEAVRQRS 244 >gi|324999431|ref|ZP_08120543.1| rRNA methylase [Pseudonocardia sp. P1] Length = 267 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 94/257 (36%), Gaps = 5/257 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K + + RH + G +S AL+ R A L R + Sbjct: 9 NPRVKNLVRLRTR-RHRDAAGVTLVEGHDELSLALDAGVRPTEVYWAPD--LVRSEELLE 65 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 +V + +I +E+ LA+ AP +R L++V + + P N Sbjct: 66 RMPGARATSVTREVFARIAYRESPDGWLAVAPAPGRPLDELELRPDALVLVAEGIEKPGN 125 Query: 147 IGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 +GA+LR+A A D I T R + AS + + + + + Sbjct: 126 VGAMLRTAEACGVDAVVIATPDRAGTDFANPNVVRASKGTVFAVPVASAPTAEVQEWLRR 185 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G +++ + L + AL++G E G+ A + + M G + +LN Sbjct: 186 RGVRSVVTTPAGTTELGRADLTGPTALVIGTEATGVTGPWLAGADATVVIPMRGTVNSLN 245 Query: 265 VSNAAAVALYITQNHFA 281 S AAAV L+ + Sbjct: 246 ASIAAAVVLFEAVRQRS 262 >gi|315634962|ref|ZP_07890243.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aggregatibacter segnis ATCC 33393] gi|315476224|gb|EFU66975.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aggregatibacter segnis ATCC 33393] Length = 245 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 113/240 (47%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A ++N ++ ++LA K RL N V+ + QT+DK Sbjct: 5 IYGIHAVKAFVSNHPERLIEVLALKGRDDQRLQPLINEIQRLGISVQFLNRQTLDKKAEG 64 Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ L RN LL+VLD V DPHN+GA LR+A A Sbjct: 65 E-VHQGIIARVHSLPELNEHDLDRLLETRNVPLLLVLDGVTDPHNLGACLRTADAAGVSA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220 +I K S ++ K A GA E++P IR++NL L+ + + ++ Sbjct: 124 VIVPKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRDLQERHNVWVVGTAGEATETL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQTKLTGALALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243 >gi|296118936|ref|ZP_06837509.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium ammoniagenes DSM 20306] gi|295968034|gb|EFG81286.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium ammoniagenes DSM 20306] Length = 317 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 69/288 (23%), Positives = 127/288 (44%), Gaps = 26/288 (9%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ K H AKL R RD RH + + + G + V L+ Sbjct: 38 TPKAEDRVYHAK--HKAKLHRQRRD---------SGRHEKETAEMVV-GRNPVIECLHA- 84 Query: 65 SRKIFQLLATKNAL--ARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + RL + P+ V +D++ G +HQG+ L+ P Sbjct: 85 KVPATNLYIAQGTRSDERLAEAVAIANARNLPILEVQRHVMDQMTG-NGMHQGIGLQIPP 143 Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + + + ++LD++ DP N+GA++RS AF DG+I +R S S + Sbjct: 144 YKYADVHDLIAEAAKKQEPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVT 203 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALI 232 AV ++++G +P R +N+T +Q+ G+Q +GL + + + D + ++ Sbjct: 204 AVAWRTSAGTAARLPVARETNMTRTVQEFQKNGYQVVGLDAGGEHTLDTYKGGKDPVVIV 263 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +G+EGKG+ +E + + M +++LN S AA L Sbjct: 264 IGSEGKGISRLVRENCDVIMSIPMTSWVESLNASVAAGAVLSEFARQR 311 >gi|58584746|ref|YP_198319.1| rRNA methylase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419062|gb|AAW71077.1| rRNA methylases [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 258 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 80/238 (33%), Positives = 137/238 (57%), Gaps = 9/238 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTID 102 +N +LYG HT AL N +R +LL T+N+ + + V+ V + + Sbjct: 7 NKNFWLYGKHTCMLALKNKNRLCIELLVTENSYREYEKEIRQCVDSKGIKVQLVKNKILS 66 Query: 103 KIVGKEAVHQGLALETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 +++ K A HQG+AL+ AP+L ++ +S +++LD V D HNIG+ILR++ F Sbjct: 67 EVLSKSANHQGIALKVAPILHSLSIKEIAESSSDSSTIVILDQVTDTHNIGSILRTSACF 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + D ++ +SPSE+A +AK+ASG L+ +P I ++N+ ++ + G+ G S++K Sbjct: 127 NVDALVLPYNHSPSENASIAKAASGTLDIVPLIHVTNVVKTMEYLKKVGYWCYGFDSNAK 186 Query: 218 KPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +++ KI +I G+EGKG+R +E + + M +I +LNVSNAAA+ LY Sbjct: 187 ENIDEIKSFGKKIVIIFGSEGKGMRRLVKENCDYLLKIPMSNVIDSLNVSNAAAIGLY 244 >gi|325571078|ref|ZP_08146650.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC 12755] gi|325156163|gb|EGC68349.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC 12755] Length = 253 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 55/274 (20%), Positives = 100/274 (36%), Gaps = 25/274 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I KK+ I +K + +H +Q + G H V A Sbjct: 1 MKEIQSKKNTFIKEIKKL-------------------TQKKHRTQTNTYLIDGWHLVQEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L I LL T L+ + + + + I ++ QG+ Sbjct: 42 LQA-KVPIKALLVTPRGLSEANGQLDDYQ--EESYLITEEIAAMLSDLPTPQGIFAVVEK 98 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + ++LD+V DP N+G ++R+A A G+ + + S + +S Sbjct: 99 QEQNL---QTLTGNWLILDNVQDPGNVGTMIRTADAAGFSGVFLGEGTADLYSTKVLRSM 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P + + Q + + P + K A ILG EG+G+ Sbjct: 156 QGSNYHLPILEGAIPPFLKQLRSAGVTIYGTELNKEAVPYTELPKEQTAAFILGNEGQGV 215 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P+ ++ + G ++LNV+ AA + +Y Sbjct: 216 HPELLALTDKNVYIPIYGQAESLNVAIAAGILMY 249 >gi|325972623|ref|YP_004248814.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta sp. Buddy] gi|324027861|gb|ADY14620.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta sp. Buddy] Length = 251 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 109/244 (44%), Gaps = 16/244 (6%) Query: 51 LYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK- 107 + G H + L ++ + + L+ A L VK + +D++V + Sbjct: 5 IIGFHAIEEGLKGAASGSVLYLVRGMGSNTQALERQALLTGKVLVKKIAKVEMDRMVDQA 64 Query: 108 ---------EAVHQGLALETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 +G + +S L++VLD + DP N+GAILRSA Sbjct: 65 DHRGAVLDLMVPGKGSGARIPAMSVKEYCATLKDDDSALVLVLDEITDPQNLGAILRSAD 124 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 FS +I +R S + + K +SGA +++P ++N+ ++ + S GF + +S Sbjct: 125 QFSVSLVIIPERRSAQANTTVVKVSSGAAQYVPLATVTNMNREIEYLKSQGFW-VYGASM 183 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 S + + + + + L++G EGKG+ TQ+ M + M G I +LNVS A + LY Sbjct: 184 SGQAVYKTVFPKRTVLVMGNEGKGIGQLTQKLCDHMVTIPMSGHIDSLNVSVATGILLYE 243 Query: 276 TQNH 279 + Sbjct: 244 VRRQ 247 >gi|282890121|ref|ZP_06298652.1| hypothetical protein pah_c013o022 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499972|gb|EFB42260.1| hypothetical protein pah_c013o022 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 277 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 86/265 (32%), Gaps = 13/265 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW-- 83 + K+ ++ Q + + G + A++ RK+ L + Sbjct: 14 QNPKIKQAVKLRER-HARKQTDLFLIEGYRELLRAVDAG-RKMETLFFCPELYLGTNEAS 71 Query: 84 --DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLM 136 + K+ ++ GL D +N+ L+ Sbjct: 72 LIQKIAKTGASLYQCTESVFKKLSYRDR-PDGLIAIAPQFHLSLEDLGKQLKNQNNPFLI 130 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 V + + P N+G ILR + A D +I AS + S Sbjct: 131 VAEAIEKPGNLGTILRCSDAVGLDALIVC-DACTDIHNPNVVRASVGTLFTVPVIESQGA 189 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + LQ + G + + +K+ L +A+ +G E GL P+ E A + M Sbjct: 190 ETLQWLKQKGISILAATPHAKQELADIDLTGPLAIAVGTEQLGLSPQWMEQADIQVRIPM 249 Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281 GI +LNV+ A + LY Sbjct: 250 YGIADSLNVAMATTILLYEALRQRK 274 >gi|167563173|ref|ZP_02356089.1| RNA methyltransferase, TrmH family protein [Burkholderia oklahomensis EO147] gi|167570356|ref|ZP_02363230.1| RNA methyltransferase, TrmH family protein [Burkholderia oklahomensis C6786] Length = 262 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 108/261 (41%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + L G+H SA L+ + + T ALA Sbjct: 2 KAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDTAGQPELCV-VTDGALA 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + + P + V P + + GL L + V ++ +++ Sbjct: 61 HAEAREIVGRVEPARLVTLPDALFGQLSNVVNGVGLLLLVERPAPALPERVVDTSVVL-- 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +SA GA + ++ Sbjct: 119 DGVQDAGNVGSILRSAAAAGVQQVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDVDTL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++++ S + ++ + + + G EG G+ + ++ AT + PG Sbjct: 179 IERLAVPV---ALTDSHGARAIDDCDLSGPVVWVFGNEGAGVSARWRDAATHRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAA+ L+ Sbjct: 236 GMESLNVAAAAAICLFEQCRQ 256 >gi|325298424|ref|YP_004258341.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides salanitronis DSM 18170] gi|324317977|gb|ADY35868.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides salanitronis DSM 18170] Length = 246 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 11/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 +N ++G+ V A+ L+ ++ LA+ + A PV+ VP + ID+ Sbjct: 3 EKNEMIFGIRAVIEAIEAGKEIDKVLIKKDMQSELAKELFAALKQSFIPVQRVPVERIDR 62 Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I HQG+ +P+ L + L ++LD + D N GAI R+ Sbjct: 63 IT--RKNHQGVVAFISPITYQRTEDLVPFLFEQGKNPLFILLDGITDVRNFGAIARTCEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II + S S +A K+++GAL +P R +N+ ++ + GF+ I + Sbjct: 121 AGVDAIIIPSKNSVSVNADAVKTSAGALLSLPVCRENNILSTIRFLKESGFKIIAATEKG 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +I+GAE G+ + + + G I++LNVS AA + +Y Sbjct: 181 DYDYTKADYHSPTCIIMGAEDTGVPYEHLALCDEWIKIPLFGTIESLNVSVAAGILIYKA 240 Query: 277 QNHF 280 Sbjct: 241 IEQR 244 >gi|167751467|ref|ZP_02423594.1| hypothetical protein EUBSIR_02463 [Eubacterium siraeum DSM 15702] gi|167655275|gb|EDR99404.1| hypothetical protein EUBSIR_02463 [Eubacterium siraeum DSM 15702] Length = 262 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 91/256 (35%), Gaps = 2/256 (0%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + + K+ + ++ ++ Q G A+ + T A + Sbjct: 5 SKQNTYIKEYRKLTEQRKYRRQTGYFVCEGAKLAVEAVKSGCALGENAYYTAAAAEKYPE 64 Query: 84 DANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 +L + + + D I ++ L + +S+ ++L+++ Sbjct: 65 CISLLRESCKMVQISEEVADSISDTKSPQGIFITVRHLDKILNLSTIDSSRQFIILENLQ 124 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D NIG I+RS AFS DG+I + + +SA G+L +P Sbjct: 125 DMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLFRLPIYCCDTEEAITLLQ 184 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 SD L +E K A+++G EG G+ ++ + + ++ Sbjct: 185 KGGFTVYSAELSDRSVRLGEEKLPQKTAVVIGNEGNGVSDTVKKLCDKSLFIPIS-SAES 243 Query: 263 LNVSNAAAVALYITQN 278 LN S AA+V + Sbjct: 244 LNASVAASVIAWEMSK 259 >gi|91783279|ref|YP_558485.1| RNA methyltransferase TrmH, group 3 [Burkholderia xenovorans LB400] gi|91687233|gb|ABE30433.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia xenovorans LB400] Length = 247 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 67/239 (28%), Positives = 115/239 (48%), Gaps = 7/239 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + + K+ A + + + Sbjct: 6 VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E + + A L+ LD + S L++VLD V DPHN+GA LR A A + Sbjct: 66 TERHQGVVARAGDMPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + + +A AK ASGA + +PYI ++NL AL+++ G +G + ++ K L Sbjct: 126 IAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGEATKSLYD 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V L+ + Sbjct: 186 TELDGPVALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRS 244 >gi|325261201|ref|ZP_08127939.1| RNA methyltransferase, TrmH family [Clostridium sp. D5] gi|324032655|gb|EGB93932.1| RNA methyltransferase, TrmH family [Clostridium sp. D5] Length = 257 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 104/254 (40%), Gaps = 4/254 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 ++ K++ +KSR +Q G V P + +L ++ + + + Sbjct: 7 NQKVKELLQLQKKSRIRNQEGVFIAEGSRMVGE---TPKESLVRLYVSETYYKKHEEELK 63 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 + P + + + + LA+ + + + ++VLD++ DP N Sbjct: 64 KYNRQP-EVLTDTVFAYVSDTKTPQGILAVVRQMEYTMEEITGKGNPHILVLDNLQDPGN 122 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G I R+A A GI+ + + +S GA+ +P++ + ++ + + + Sbjct: 123 LGTIFRTAEAAGVTGILMSGDCVDIYNPKTIRSTMGAVYRMPFLYVEDMIEGIDNLKKNN 182 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + D K ++E A ++G EG GLRP+ E A + M G ++LN + Sbjct: 183 IRVYAAHLDGKNSYDKEDYCGGTAFLIGNEGNGLRPEVAEKADVWVRIPMEGQAESLNAA 242 Query: 267 NAAAVALYITQNHF 280 AAAV ++ Sbjct: 243 VAAAVLMFEASRQR 256 >gi|291557091|emb|CBL34208.1| rRNA methylases [Eubacterium siraeum V10Sc8a] Length = 262 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 91/259 (35%), Gaps = 4/259 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + + K+ + ++ ++ Q G A+ + T A + Sbjct: 5 SKQNTYIKEYRKLTEQRKYRRQTGYFVCEGAKLAVEAVKSGCALGENAYYTAAAAEKYPE 64 Query: 84 DANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 +L + + + D I ++ L + +S+ ++L+++ Sbjct: 65 CISLLRESCKMVQISEEVADSISDTKSPQGIFITVRHLDKILNLSTIDSSRQFIILENLQ 124 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D NIG I+RS AFS DG+I + + +SA G+L +P Sbjct: 125 DMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLFRLPIYCCDTEEAITLLQ 184 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 SD L +E K A+++G EG G+ ++ + + ++ Sbjct: 185 KGGFTVYSAELSDRSVKLGEEKLPQKTAVVIGNEGNGVSDTVKKLCDKSLFIPIS-SAES 243 Query: 263 LNVSNAAAVALYITQ--NH 279 LN S AA+V + Sbjct: 244 LNASVAASVIAWEMSKVRQ 262 >gi|251793952|ref|YP_003008684.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aggregatibacter aphrophilus NJ8700] gi|247535351|gb|ACS98597.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter aphrophilus NJ8700] Length = 245 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 113/242 (46%), Gaps = 11/242 (4%) Query: 51 LYGVHTVSAALNN-PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG+H V A + + P R I L RL N V+ + QT+DK Sbjct: 5 IYGIHAVKAFVTHYPERLIEVLALKGRDDQRLQLLINEIQRLGISVQFLNRQTLDKKAEG 64 Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ L + + LL+VLD V DPHN+GA LR+A A + Sbjct: 65 E-VHQGIIARVHSLPELNEHDLDLLLEQQKAPLLLVLDGVTDPHNLGACLRTADAAGVNA 123 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220 +I TK S ++ K A GA E++P IR++NL L+++ + ++ Sbjct: 124 VIVTKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRELQKRHNVWVVGTAGETTETL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q +AL++GAEG+G+R T+E + + M G + +LNVS A V L+ Sbjct: 184 YQTKLTGALALVMGAEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVATGVCLFEIVRQR 243 Query: 281 AK 282 K Sbjct: 244 LK 245 >gi|188579486|ref|YP_001922931.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium populi BJ001] gi|179342984|gb|ACB78396.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium populi BJ001] Length = 269 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 110/236 (46%), Positives = 147/236 (62%), Gaps = 1/236 (0%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 +++ LYG H VS AL N R +LLAT+NALARL +A + P + V P ID Sbjct: 29 REGRDHVVLYGWHPVSQALANAGRHFHRLLATENALARL-KEAGIELPIEPELVRPSAID 87 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 K++G +AVHQGL E PL +P LDA+ + LL+ LD + DPHN+GAI+R+A AF I Sbjct: 88 KLLGPDAVHQGLYAEAEPLAAPALDAMPDDALLLALDQITDPHNVGAIVRTAAAFGVTAI 147 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 +TT R+SP+ + VLAKSASG LEH+P + + NL +AL + GF IGL SD+ L+ Sbjct: 148 VTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRIGLDSDAGTSLDA 207 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+LGAEGKGLR +T E + + G I++LNVSNAAA+ LY Sbjct: 208 VGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATGAIRSLNVSNAAAITLYALTR 263 >gi|291515114|emb|CBK64324.1| rRNA methylase, putative, group 3 [Alistipes shahii WAL 8301] Length = 246 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 113/241 (46%), Gaps = 12/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G+ V+ A+ + I +L K A L + D + H + VP + ++++ Sbjct: 5 LIFGIRPVAEAIEAGKQ-IEKLYIRKGAEGQLMQELKDLCMRHRLHYQEVPVEKLNRLT- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ +TA + L + + L+++ D V D N GAI RSA Sbjct: 63 -RGNHQGVVAQTAAIEYVQLTDILERVPEDETPLVVLFDGVTDVRNFGAIARSAECAGAH 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+IT + S +A +S++GAL IP R+ ++ + L+ + + GFQ + + S+K L Sbjct: 122 GLITPLKNSAPVNAEAIRSSAGALTTIPVCRVGSVRNTLKALQAEGFQVVAATEKSRKLL 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +++GAE G+ + + + + G I++LNVS AAAV L+ Sbjct: 182 YDADFRRPTVIVMGAEDTGISKEVLKLCDEQLAIPLIGHIESLNVSAAAAVMLFEVVRQR 241 Query: 281 A 281 Sbjct: 242 I 242 >gi|260063491|ref|YP_003196571.1| putative rRNA methylase [Robiginitalea biformata HTCC2501] gi|88782935|gb|EAR14109.1| putative rRNA methylase [Robiginitalea biformata HTCC2501] Length = 273 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 92/257 (35%), Gaps = 4/257 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + + +++Q ++QKSR + L G + AL R I L L A Sbjct: 11 QNPEIRQLQHWSQKSRDRRKSGVFVLEGYRELGLALQGGYR-IRTLYYCPEILGDERRQA 69 Query: 86 NLPH-PFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHVND 143 ++ P+ + + + +E L+ + L++V Sbjct: 70 LSDRAGCSWVSLSPEVYSHLAYRGKTEGVIGLVEAREHRLQDLELEGKNPLILVAQAPEK 129 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GA+LR+A A S D +I +S + ++ +AL + Sbjct: 130 PGNLGALLRTADAASLDAVIV-ADLKGDLYNPNVIRSSVGCLFTVPVAQASTEEALSYLK 188 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + S +Q A+ +G E GL A + + M G I ++ Sbjct: 189 ARDIAVYAASLGGSVRYDQADYLGASAIAVGTEATGLTEAWTRQAEACVEIPMAGAIDSM 248 Query: 264 NVSNAAAVALYITQNHF 280 NVS AAAV L+ + Sbjct: 249 NVSVAAAVLLFEARRQR 265 >gi|228472473|ref|ZP_04057235.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga gingivalis ATCC 33624] gi|228276158|gb|EEK14905.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga gingivalis ATCC 33624] Length = 264 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 56/281 (19%), Positives = 106/281 (37%), Gaps = 22/281 (7%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ I K + S ++KS+ + + G +S A Sbjct: 1 MQQITSTQNSLI------------------KYLYSLSEKSKLRREHQEFLFEGKRELSLA 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I QL L + + + +P+ + +K+ + + LAL Sbjct: 43 IAAGYH-IKQLFFCPAILPAAEVERSFA-GYPLTEISLPVYEKLSYRSSTEGILALAQGK 100 Query: 121 LLSPT-LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 LS + L + + LL++ + P NIGA+LR+A A D + + + + +S Sbjct: 101 DLSLSALSFNKENPLLLIAEAPEKPGNIGALLRTADAAGVDAVCIANPKTDMYNPNVIRS 160 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 + G L +P S + + P + + A+ +G E G Sbjct: 161 SVGTLFTVPIATASTEELLHFLAQEDFTLY-CAALSASVPYDSVSYKGRTAIAVGTEDVG 219 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L P E ++ + M G I ++NVS +AAV ++ Sbjct: 220 LSPLWLEASSQNIIIPMRGKIDSMNVSVSAAVLIFEAVRQR 260 >gi|307707580|ref|ZP_07644061.1| possible rRNA/tRNA methylase [Streptococcus mitis NCTC 12261] gi|307616293|gb|EFN95485.1| possible rRNA/tRNA methylase [Streptococcus mitis NCTC 12261] Length = 246 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 103/276 (37%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A ++ +L + V + + + QG+ Sbjct: 40 VQAGVT-IEKIFALESYREQLAAFSQT------VWVSEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADFSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+S+ + + S + + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRMSSQALLKETKEAGISVLATTLSKDSVDYRELPPIENFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SSLMAESADQLVHISMKGKAESLNVAVAAGILIFHL 245 >gi|296447196|ref|ZP_06889126.1| RNA methyltransferase, TrmH family, group 3 [Methylosinus trichosporium OB3b] gi|296255255|gb|EFH02352.1| RNA methyltransferase, TrmH family, group 3 [Methylosinus trichosporium OB3b] Length = 270 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 109/253 (43%), Positives = 148/253 (58%), Gaps = 2/253 (0%) Query: 22 KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81 K RN R ++ + + + LYG H V AL RK+ L AT+ A R+ Sbjct: 7 KGPRNDRRLPPREAPPAEPFRRPSADVVVLYGAHAVREALRARRRKLLTLYATEGAAERI 66 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDH 140 A + V P+ + +G E+VHQGL LE PL + + D S +++VLD Sbjct: 67 APLAAEA-GLTPQIVDPRALTSRLGDESVHQGLLLEARPLPAAEIADIETKSGVVLVLDQ 125 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DPHN+GAILR+A AF+ D ++ T R SP + VLAK+ASGALEH+ + + NL ALQ Sbjct: 126 VTDPHNVGAILRTAAAFAVDALVMTDRNSPELTGVLAKAASGALEHVLIVSVVNLARALQ 185 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 ++ G +GL S++ PLE+ + IAL+LGAEGKGLR T+E +A L MPG I Sbjct: 186 ELSQSGRLVVGLDSEAPAPLEETRLQNPIALVLGAEGKGLRRLTRERCDVLARLDMPGPI 245 Query: 261 KALNVSNAAAVAL 273 K+LNVSNA AVAL Sbjct: 246 KSLNVSNACAVAL 258 >gi|240172165|ref|ZP_04750824.1| tRNA/rRNA methyltransferase [Mycobacterium kansasii ATCC 12478] Length = 310 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 110/250 (44%), Gaps = 12/250 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPH--PFPVKTV 96 + E + G + V L + A R+ + V Sbjct: 62 RSRIDEAETVL--GRNPVLECLRAGVPATALYVALGAEADERVTESVARAADSGISILEV 119 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAI 150 P +D++ +HQG+AL+ P D LL+ LD+++DP N+GAI Sbjct: 120 PRADLDRMTANH-LHQGIALQVPPYHYAHPDDLLAAAMDTPPALLVALDNISDPRNLGAI 178 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +RS AF G++ +R S S +AV ++++GA IP R +NLT L+ G + I Sbjct: 179 VRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKDWADRGLRVI 238 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 GL + + ++ +D + +++G+EGKGL ++ + + M G ++LN S AA Sbjct: 239 GLDAAGETAVDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIPMAGRAESLNASVAAG 298 Query: 271 VALYITQNHF 280 V L Sbjct: 299 VVLAEIARQR 308 >gi|187923698|ref|YP_001895340.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia phytofirmans PsJN] gi|187714892|gb|ACD16116.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia phytofirmans PsJN] Length = 247 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 67/239 (28%), Positives = 116/239 (48%), Gaps = 7/239 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + ++ K+ A + + + Sbjct: 6 VLYGFHAVTARMRHDASTVEEVYYDATRKDRRMTEFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E + + A L+ LD + S L++VLD V DPHN+GA LR A A + Sbjct: 66 TERHQGVVARAGDMPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + + +A AK ASGA + +PYI ++NL AL+++ G +G + ++ K L Sbjct: 126 IAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGEATKSLYD 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V L+ + Sbjct: 186 TELDGPVALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRS 244 >gi|229003106|ref|ZP_04160955.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4] gi|228758142|gb|EEM07338.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4] Length = 247 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 117/243 (48%), Gaps = 13/243 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ G + V AL + R I ++ + A ++ + ++ P + +D++ Sbjct: 3 SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKIILQHAPKKKLDQL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E HQG+ + A L+ ++LD + DPHN+G+I+R+A A Sbjct: 62 V--EGNHQGVIAQVAAYQYAELEDLFEVAAKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G G + K Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N I L++G+EGKG+ E + HL M G + +LN S AA++ +Y Sbjct: 180 TDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLIHLPMVGKVTSLNASVAASLLMYEVY 239 Query: 278 NHF 280 Sbjct: 240 RKR 242 >gi|254294464|ref|YP_003060487.1| RNA methyltransferase, TrmH family, group 3 [Hirschia baltica ATCC 49814] gi|254042995|gb|ACT59790.1| RNA methyltransferase, TrmH family, group 3 [Hirschia baltica ATCC 49814] Length = 272 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 81/270 (30%), Positives = 143/270 (52%), Gaps = 9/270 (3%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTS-QPENLFLYGVHTVSAALNNPSRKIFQLLA 73 +K+ + ++ KK +K + ++++GVH V++AL N SRK + Sbjct: 1 MKNKPRKQSFADN--TKKNYKNQKKPTYQQLPEGEVWIWGVHAVASALKNNSRKKIRAFF 58 Query: 74 TKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--R 130 T+N +L DA LPH + P+ IDK+V ++VHQG+ L L + V Sbjct: 59 TRNGAQKLGLDAEHLPHYA--QLADPKDIDKLVPPDSVHQGVVLHARELDGVDFEDVLAN 116 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 +++LD V DP N+GA+ RS AF +I R SP+ LAK+A GA++ IP + Sbjct: 117 GEGPIVILDQVTDPQNVGAVFRSCAAFGAKAVIMQTRNSPNLGGALAKAAVGAIDIIPEV 176 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETAT 249 + N++ A+ + G+ +G+ +++ + Q +A+++GAEG G+RP + + Sbjct: 177 AVVNISRAVTALSDAGWWVVGMDGNTEIDIAQAFDTPAPLAIVMGAEGSGIRPLIAKGCS 236 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +A + + +++LNVS+AA++ALY Sbjct: 237 QLAKISISPQMESLNVSSAASIALYEANRQ 266 >gi|254486509|ref|ZP_05099714.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. GAI101] gi|214043378|gb|EEB84016.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. GAI101] Length = 264 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 88/252 (34%), Positives = 143/252 (56%), Gaps = 7/252 (2%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 K ++ + + ++L+G+H V AL NP+R+ +L+ T NA +L+ Sbjct: 11 KWVVQKEQEKKVEANQTVWLFGLHAVRDALENPAREKLRLMVTPNAQIKLEAAIAQA-GI 69 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL---DAVRNSQLLMVLDHVNDPHNIG 148 + V P+ + + +VHQG LE PL +L + +++LD V DPHN+G Sbjct: 70 TPEVVDPRKFRPPLDQGSVHQGAVLEVKPLSWGSLAEVCIGAEAPRVLLLDRVTDPHNVG 129 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AILRSA +I + ++ E+ LAKSASGALE PY+R+ NL D+++++ + G+ Sbjct: 130 AILRSAEVLGASAVIGMRHHAAPETGSLAKSASGALERQPYLRVRNLADSIKELQNMGYL 189 Query: 209 TIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +GL +++ +E ++ +AL+LGAEG GLR KT+ET + + G +LNV Sbjct: 190 VLGLDGEAEITVEAALEGKRDRPVALVLGAEGPGLREKTKETVDVLVRIDAEGGFGSLNV 249 Query: 266 SNAAAVALYITQ 277 SNAAA+ALY ++ Sbjct: 250 SNAAAIALYASR 261 >gi|167040674|ref|YP_001663659.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X514] gi|289578709|ref|YP_003477336.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus Ab9] gi|297544943|ref|YP_003677245.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|300914715|ref|ZP_07132031.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561] gi|307724051|ref|YP_003903802.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X513] gi|166854914|gb|ABY93323.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X514] gi|289528422|gb|ADD02774.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus Ab9] gi|296842718|gb|ADH61234.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|300889650|gb|EFK84796.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561] gi|307581112|gb|ADN54511.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X513] Length = 254 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 89/238 (37%), Gaps = 11/238 (4%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + F+ G +V AL + + + ++P + + Sbjct: 23 RYEEGLFFVEGTTSVLEALKSNFEIEYIV-------MGEGVKIDIPTGNFKIVHTTERVF 75 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 K + Q + +++ + ++ D++ DP N+G I+R+A AF I Sbjct: 76 KKISDTVTPQMVMAIIKIPKYEEDTYIKDKGIYIIADNIQDPGNLGTIIRTADAFGASAI 135 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 T + + +++ G++ HIP I ++ K L + Sbjct: 136 FTINNCVDVFNPKVLRASMGSIFHIPVIVTASQILLKLKQRGIKVFATHLKARKLVHECN 195 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +DK+A +LG E KG+ + + M G ++LNVS AA + LY +Q Sbjct: 196 I--SDKVAFVLGNEAKGVS--VVDLVDDFVKIPMTGEAESLNVSIAAGIFLYESQRQR 249 >gi|206900335|ref|YP_002251024.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12] gi|206739438|gb|ACI18496.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12] Length = 266 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 96/282 (34%), Gaps = 24/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + H + + G + A Sbjct: 1 MKFISSPSNEVIKEVIKLHDKN-------------------KRKKLNKCLVEGWRLIQDA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETA 119 N +++ + + + V ++KI E + Sbjct: 42 KENGISIEKLIISKSLWNKKREEILEKFSSCDLYIVEDNLMNKISLMETPPGIMGVFPLF 101 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + +++++++ D + DP N+G I+R A D I ++ + + ++ Sbjct: 102 LSPKWEILKNKDNKIVLYSDDIQDPGNLGTIIRVADGVGVDAFILSENTVDPYNYKVIRA 161 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ++G++ +P + T ++ + K +E + LILG E G Sbjct: 162 STGSIFRVPIWISDDKTFVEFFKD---WKIVIADPKGSKLYFEENFKESFVLILGNEAWG 218 Query: 240 LRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + + + + + + +LNVS AA+V L+ Q Sbjct: 219 IKKEKYLDLNPILLRIPLRKGVDSLNVSVAASVFLFEAQRQR 260 >gi|332663829|ref|YP_004446617.1| RNA methyltransferase, TrmH family, group 3 [Haliscomenobacter hydrossis DSM 1100] gi|332332643|gb|AEE49744.1| RNA methyltransferase, TrmH family, group 3 [Haliscomenobacter hydrossis DSM 1100] Length = 247 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 102/245 (41%), Gaps = 11/245 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDANLPHPFPVKTVPPQTID 102 + + +YG H V A+ + +L + + + P + VP + ++ Sbjct: 3 EKLSEIVYGRHPVVDAIKSGWPVDKVVLQQGIRGEFEKEIRHLTKEYEVPFQVVPKERLN 62 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 K+ G HQG+ +P+ L+ + L+++LD + D N GAI RSA Sbjct: 63 KLAG--GNHQGVVAFISPIPFQRLEDILPSVFENGQNPLIVLLDGITDVRNFGAIARSAE 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F ++ + + S +A K+++GAL IP R ++ A++ + G + Sbjct: 121 VFGAHALVISSKKSAQVNAEAVKTSAGALTLIPVCREKSMVGAIELLKLSGVKVYVSDLA 180 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + +AL++G+E +G+ P A + G +LN S AA + LY Sbjct: 181 ATASIAALDWTIPVALVIGSESEGITPAVAALADDRFLIPQLGQTDSLNASVAAGIILYE 240 Query: 276 TQNHF 280 Sbjct: 241 ATRQR 245 >gi|307326969|ref|ZP_07606159.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces violaceusniger Tu 4113] gi|306887267|gb|EFN18263.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces violaceusniger Tu 4113] Length = 316 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 66/280 (23%), Positives = 115/280 (41%), Gaps = 15/280 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQ 70 ++ H AK R + ++ +R + + + G ++V AL + Q Sbjct: 40 EMRKGH-AKQRITNARTRQAAKRPV-ARRGGKGSSELVVGRNSVFEALREGVPANTLYVQ 97 Query: 71 LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128 + R + P +D++ HQG+ L+ P + Sbjct: 98 QFIDSDDRVREALKLAADRGGIHLMEAPKPELDRMTNGL-NHQGVVLQVPPYEYAHPEDL 156 Query: 129 ------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L++ LD V DP N+GA++RS AF G++ +R + +A K+++G Sbjct: 157 SAAAFDEGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 216 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLR 241 P R +NLT L+ G +GL++D + L+ + + +++G+EGKGL Sbjct: 217 TAARTPVARATNLTRTLEAYQKAGLTVVGLAADGEVELQDVEALDGPLVIVVGSEGKGLS 276 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + MPG ++LN AA V LY A Sbjct: 277 RLVGETCDLRVRIPMPGGAESLNAGVAAGVVLYEAARRRA 316 >gi|116333650|ref|YP_795177.1| rRNA methylase [Lactobacillus brevis ATCC 367] gi|116098997|gb|ABJ64146.1| rRNA methylase [Lactobacillus brevis ATCC 367] Length = 256 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 93/256 (36%), Gaps = 5/256 (1%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 +R ++ +S K + L H V A+ + + ++ T L Sbjct: 2 KEKITSSQNRRVQEWRSLASK-KGRKATRTYLLESWHLVQEAIKA-QQPLTAIMGTAEQL 59 Query: 79 ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + +LP P+ + + K +G QG+ +D + + L Sbjct: 60 SAHAD--SLPTDVPIYELTDS-LAKTIGDTGTPQGIFATAPMPDETAIDPKTATGAWLFL 116 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D+V DP NIG ++R+A A G++ K + + ++ G+ HI + Sbjct: 117 DYVQDPGNIGTMVRTADAAGLTGVVFGKGTASRFLPKVLRAMQGSQFHIQLVEADLHDWI 176 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + A+++G EG G+ P Q T ++ + G Sbjct: 177 GAFTARQLPVYGTNLDPQAQDYRDVPALTNGAIVMGNEGNGMAPDLQRLTTQNLYIPIKG 236 Query: 259 IIKALNVSNAAAVALY 274 ++LNV+ AA V ++ Sbjct: 237 QAESLNVAVAAGVVMF 252 >gi|15964143|ref|NP_384496.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium meliloti 1021] gi|307301288|ref|ZP_07581050.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C] gi|307317959|ref|ZP_07597396.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83] gi|15073319|emb|CAC41827.1| Probable RNA methyltransferase, TrmH family [Sinorhizobium meliloti 1021] gi|306896361|gb|EFN27110.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83] gi|306903744|gb|EFN34331.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C] Length = 288 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 6/258 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K +++ QK +H + + G+ V AL+ KI L+ K A + + Sbjct: 26 NPIVKDIRALTQK-KHRDETRSFMAEGLKLVIDALDLGW-KIKTLVYAKAAKGKPQVEQV 83 Query: 87 LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 V V + I I ++ + + + + + LD V Sbjct: 84 AAKTVARGGLVLEVNEKVISTITRRDNPQMVVGIFEQRYSPLRDIHPQEGETYVALDRVR 143 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+A A GII + S ++ G++ IP R + + Sbjct: 144 DPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAIPIARANTEDFIRWQR 203 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + + S + K+ + L++G E GL + A ++A + G + Sbjct: 204 AAGVQVVATHLAGSVDYRTIDYKSKPVVLLMGNEQAGLPVELAREAGALARIPQAGRADS 263 Query: 263 LNVSNAAAVALYITQNHF 280 LN++ A + L+ + H Sbjct: 264 LNLAIATGIMLFEARRHL 281 >gi|194333376|ref|YP_002015236.1| RNA methyltransferase, TrmH family, group 3 [Prosthecochloris aestuarii DSM 271] gi|194311194|gb|ACF45589.1| RNA methyltransferase, TrmH family, group 3 [Prosthecochloris aestuarii DSM 271] Length = 243 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 108/239 (45%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG ++V LN +I ++ N + H V + + +I G Sbjct: 4 VVYGRNSVLELLNATPERIEKIYFQFNTSHNKLKEITITARRHRIAVGKARLEKLSEIAG 63 Query: 107 KEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ + + ++ ++ L+++L + DP+NIGAI+RSA A + D Sbjct: 64 TTK-HQGVCALISTINYYDIEEILEKPRNSNPLIVILPGLQDPYNIGAIIRSAEAVAADA 122 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ + +A + K+++GAL H+ ++ +L L+ + S FQ + +++ Sbjct: 123 VVLVEGKGSPVNATVHKASAGALPHMRVCKVKSLKKCLELLRSKKFQIVAADMHAERNYT 182 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ALI+G EG+GL E ++ L M G I++LNVS A V LY Sbjct: 183 DIDFTRPSALIMGEEGRGLGTGLLEEQDAIVRLPMAGCIESLNVSVTAGVLLYEAMRQR 241 >gi|315225077|ref|ZP_07866894.1| RNA methyltransferase [Capnocytophaga ochracea F0287] gi|314944760|gb|EFS96792.1| RNA methyltransferase [Capnocytophaga ochracea F0287] Length = 244 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 111/239 (46%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG+ + AL K+F + L R PV+ VP + ++++ + Sbjct: 7 IYGIRALIEALKAGKTIDKVFLQKGLQGGLFRELMPLLQAAQVPVQYVPVEKLNRLT--K 64 Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ +P+ + + L +VLDH++D N GAI+R+A G Sbjct: 65 KNHQGVVATLSPVDYHNFEDLVISVTESGVTPLFLVLDHLSDVRNFGAIIRTAECTGVSG 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II KR S S +A K+++GA+ +P ++ NL DA+ + G + + + + + L Sbjct: 125 IIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQGSGIRVVAATEKTSQLLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E A+++GAE G+ P + S A L M G I +LNVS A AV LY Sbjct: 185 AEDFTVPTAIVMGAEDVGVSPAVLKVVDSKAKLPMVGDISSLNVSVACAVFLYEALKQR 243 >gi|229543606|ref|ZP_04432666.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus coagulans 36D1] gi|229328026|gb|EEN93701.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus coagulans 36D1] Length = 251 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 94/277 (33%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ ++ K + + L G H V A Sbjct: 1 MKYIQSLQNPQVKHWKKLTAK-------------------KEREKTFTYLLEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +++ + W+ PV TV + + E A+ Sbjct: 42 LK--EEVVTEIIVEEGVDLPNRWN---TEGVPVTTVTHEISKTLADTETTQGIFAVCRMK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + +++D V DP N G ++R+A A D +I K + S + ++A Sbjct: 97 KQPSKI----IGRRYLLIDAVQDPGNTGTMIRTADAAGFDAVIFGKGTADPYSPKVLRAA 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+ ++ + + ++ + D A+++G EG G+ Sbjct: 153 QGSHLHVGLLKGDLNMWIEKLNEAAVPVYGTA-LENGVTFREVNPGDAFAILVGNEGSGV 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P + + G ++LNV+ AA + +Y Sbjct: 212 HPDLLAQTEQNLSIPIFGKSESLNVAVAAGILMYDFA 248 >gi|294789319|ref|ZP_06754557.1| RNA methyltransferase, TrmH family [Simonsiella muelleri ATCC 29453] gi|294482744|gb|EFG30433.1| RNA methyltransferase, TrmH family [Simonsiella muelleri ATCC 29453] Length = 264 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 53/283 (18%), Positives = 105/283 (37%), Gaps = 26/283 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ +E++ K + Q ++ + L GVH + A Sbjct: 1 MKIITSVHNEQL------------------KFISKLLQNAKSRREHRATVLEGVHLLDAY 42 Query: 61 LNNPSRKIFQLLATKNAL--ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L+ ++ +N L + N + V ++KI + + + Sbjct: 43 LDASHLP-KRVFVPQNRLANPEIQRIINRLPEHLITLVEHGKLNKIS-QLTEAEDIMTWV 100 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 +S +L + +VL+++ + NIG ILRSA A I+ +K + S + + Sbjct: 101 ELPISGSLPISDDC---VVLENIQNSGNIGTILRSAAAAGVAQIVLSKGCADVWSPKVLR 157 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +A GA + +L D + + ++ +Q +A + G EG Sbjct: 158 AAMGAHFLLKIHERVDLLDWRESFSGDVLATALTEKNNFSLYDKQLDLTKPVAWVFGNEG 217 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G+ A + + M G ++LNV+ AA + L+ Sbjct: 218 SGVSADMLAQANATVKIPMIGATESLNVAMAATICLFEQMRQR 260 >gi|161869843|ref|YP_001599012.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria meningitidis 053442] gi|161595396|gb|ABX73056.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria meningitidis 053442] Length = 234 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 106/225 (47%), Gaps = 9/225 (4%) Query: 64 PSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET-- 118 + I +L + +A R + V V +D I K A HQG+A Sbjct: 4 NPKSIVELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAIS-KGARHQGVAGFIDA 62 Query: 119 ---APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 L L+ + LL++LD + DPHN+GA LR+A A +I K S +A Sbjct: 63 SKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNAT 122 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 ++K A GA E +PYI ++NL L+++ +G IG + L D+ A ++G Sbjct: 123 VSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYHCNLPDRAAWVMGN 182 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 183 EGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 227 >gi|332365775|gb|EGJ43532.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK355] Length = 233 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 9/233 (3%) Query: 55 HTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 H V+ AL K++ + D + P +T+ ++ AVHQG Sbjct: 2 HAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMTD-GAVHQG 60 Query: 114 LALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 L A + ++ LL++LD + DPHN+G+ILR+A A + G+I K Sbjct: 61 FVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKH 120 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + + V+AK+++GA+EHIP R++NL+ L K+ GF G + Sbjct: 121 RAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTPSHKWNTA-G 179 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ +Y + Sbjct: 180 KLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 232 >gi|168489978|ref|ZP_02714177.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae SP195] gi|183571629|gb|EDT92157.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae SP195] Length = 246 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 103/276 (37%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L FP + I + QG+ Sbjct: 40 VQAGVT-IEKIFALENYRNQLAA-------FPQTVWISEDILLDLADSQTPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+++ + S + + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFYL 245 >gi|325132246|gb|EGC54940.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M6190] gi|325136323|gb|EGC58931.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M0579] gi|325138170|gb|EGC60741.1| RNA methyltransferase, TrmH family [Neisseria meningitidis ES14902] gi|325208131|gb|ADZ03583.1| RNA methyltransferase, TrmH family [Neisseria meningitidis NZ-05/33] Length = 261 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 93/283 (32%), Gaps = 26/283 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + + + + Q L GVH + Sbjct: 1 MRHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + + + + + + + +V + KI + + Sbjct: 43 LQSGGMPV-GVYIPEGKMPSEEIRRLRAVVPEGRIFSVSDGILKKISS-LSCADDILALI 100 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L TL + +VLD V DP N+G +LRSA A ++ + + + S + + Sbjct: 101 DIPLGGTLPDKGDC---VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLR 157 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + GA ++L L + F T E A + G EG Sbjct: 158 AGMGAHFLSGIYPQADLEIWLARYKGRVFATALREEKQAVLY-GEDLCGPTAWVFGNEGA 216 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G+ + A + M ++LNV+ AA + L+ + Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRS 259 >gi|296157637|ref|ZP_06840471.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. Ch1-1] gi|295891883|gb|EFG71667.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. Ch1-1] Length = 247 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 115/239 (48%), Gaps = 7/239 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + + K+ A + + + Sbjct: 6 VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E + + A L+ LD + S L++VLD V DPHN+GA LR A A + Sbjct: 66 TERHQGVVARAGDMPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + + +A AK ASGA + +PYI ++NL AL+++ G +G + ++ K L Sbjct: 126 IAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGEATKSLYD 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V L+ A Sbjct: 186 TELDGPVALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRA 244 >gi|209696173|ref|YP_002264103.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aliivibrio salmonicida LFI1238] gi|208010126|emb|CAQ80451.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aliivibrio salmonicida LFI1238] Length = 247 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 116/243 (47%), Gaps = 10/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104 N FL+G+H A L + ++ K RL F ++ +P +T+D Sbjct: 3 NEFLFGIHATKAVLERDPARFIEIFVLKGREDDRLLPIITELGELGFKIQELPRKTLDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K A HQG+ P + + L +VLD V DPHN+GA LR+A Sbjct: 63 A-KGANHQGIIARVTPAKQLNERDLDDIMDKTENPLFLVLDGVTDPHNLGACLRNADGAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S S +A ++K A GA E +P +R++NL ++ + G +G + ++ K Sbjct: 122 VAAVIVPKDKSASMTATVSKVACGAAEMVPLVRVTNLARTMRALQEKGVWFVGTAGEATK 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ V L+ Sbjct: 182 DVFQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVTSLNVSVASGVCLFEAVR 241 Query: 279 HFA 281 + Sbjct: 242 QRS 244 >gi|189485276|ref|YP_001956217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287235|dbj|BAG13756.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 255 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 111/256 (43%), Gaps = 10/256 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ +K S K + + F+ G + N R I Q+ ++ + Sbjct: 7 QNQIFKDALSLQNK-KLRDKNGLFFVEGKKQIYEIPKN--RTIKQIFISEKYKNDVTNLK 63 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 N V + K+ ++ G+ D ++NS L ++L+++ DP Sbjct: 64 N------VIMLSNHLFSKLSATKSPQ-GIMAIVEKKYYAVEDIIKNSGLFILLENIQDPG 116 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+RSA AF + +K + S ++ G++ H+P I N+ + L M + Sbjct: 117 NLGTIIRSADAFGAKAVFVSKGSADIYSDKTIRATMGSIFHLPIIDSINIKNTLNLMKNK 176 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 S +K L +K A ++G E GLR +T+ +A ++ ++MPG ++LN Sbjct: 177 KISVFAASLKGEKYLNDIKFPNKSAFVIGNEANGLRSETENSADTLVKIYMPGNTESLNA 236 Query: 266 SNAAAVALYITQNHFA 281 + AA++ +Y + Sbjct: 237 ATAASIIMYEAAKNRT 252 >gi|162447016|ref|YP_001620148.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A] gi|161985123|gb|ABX80772.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A] Length = 230 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 5/229 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + + A+ N R I++L + + + + + ++ + A Sbjct: 2 IIYGKNVIKEAVLN-KRPIYKLYLDEKSSDSKFINFLENNNISYELTNKGQLNNLTD-NA 59 Query: 110 VHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 VH G+ + LD Q ++LD V DPHN+GAILRS A + DG+I +K Sbjct: 60 VHNGVVADVKDYQYLELDVVLDKTRRQRFLMLDEVQDPHNLGAILRSVEATNYDGVIISK 119 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 ++ + V+AK++SGA+EH+ I +SNL + K+ F +G + ++ ++ KN Sbjct: 120 KHQVPLTGVVAKTSSGAIEHVKLILVSNLYQTILKLQKEDFLVVGTAGEATASYKEIPKN 179 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + +I+G EG GLRP ++ + + M G + +LNVS A A+ LY Sbjct: 180 QNLLIIMGNEGFGLRPLIKKGCDLLVSIPMLGKVNSLNVSVATALLLYE 228 >gi|295676348|ref|YP_003604872.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. CCGE1002] gi|295436191|gb|ADG15361.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. CCGE1002] Length = 247 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 118/239 (49%), Gaps = 7/239 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + + K+ A + + + Sbjct: 6 VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLQAAKDAGVRLIAADETRLWGLAR 65 Query: 107 KEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E +A A L+ LD + S L++VLD V DPHN+GA LR A A + Sbjct: 66 TERHQGVVARAGDLPLAQNLAELLDGISGSPLILVLDGVTDPHNLGACLRVADAAGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + + +A AK ASGA + +PYI ++NL AL+++ G +G + D++K + + Sbjct: 126 IAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGDAQKSVYE 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +AL++GAEG+G+R T+ET + ++ M G +++LNVS A+ V L+ A Sbjct: 186 TELDGPVALVMGAEGEGMRRLTRETCDVVMNIPMAGTVESLNVSVASGVCLFEAVRQRA 244 >gi|163746955|ref|ZP_02154312.1| RNA methyltransferase, TrmH family, putative [Oceanibulbus indolifex HEL-45] gi|161380069|gb|EDQ04481.1| RNA methyltransferase, TrmH family, putative [Oceanibulbus indolifex HEL-45] Length = 258 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 97/252 (38%), Positives = 145/252 (57%), Gaps = 7/252 (2%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 K ++ + + ++L+G+H V AL NP+R+ QL+ T NA A+L DA Sbjct: 5 KWVVQKEQDKKADAAQTVWLFGLHAVRDALMNPNREKLQLMVTPNAQAKL-EDAIAEAGI 63 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIG 148 + V P+ + +VHQG LE PL L+ V + L++LD V DPHN+G Sbjct: 64 APEVVDPRKFRPPLDPNSVHQGAVLEVKPLNWGGLEDVAIGDTAPRLLLLDRVTDPHNVG 123 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AILRSA +I TK +S E+ LAK+ASGALE PY+R+ NL DA++ + G+ Sbjct: 124 AILRSAEVLGASAVIGTKHHSAPETGALAKTASGALERQPYLRVRNLADAIRALQGMGYL 183 Query: 209 TIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +GL ++ + +E ++ +AL+LGAEG GLR KT+ET ++ + G +LNV Sbjct: 184 VLGLDGEATQTIETAVEGRRDRPVALVLGAEGPGLREKTRETVDALVRIDAAGGFGSLNV 243 Query: 266 SNAAAVALYITQ 277 SNAAA+ALY ++ Sbjct: 244 SNAAAIALYASR 255 >gi|311029029|ref|ZP_07707119.1| 23S rRNA methyltransferase [Bacillus sp. m3-13] Length = 249 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 114/245 (46%), Gaps = 13/245 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTID 102 E F+ G + V AL + R+I +L + V+ VP + ID Sbjct: 3 KEKEFIMGRNPVLEALKSN-REINKLWIAEGGQKGSIQQVIAMAKEANVLVQFVPRKKID 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V E HQG+ A LD ++LD + DPHN+G+I+R+A Sbjct: 62 QMV--EGNHQGVVASVAAYDYAELDDLYKAAEQRNEDPFFLILDEIEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GII KR + +A +AKS++GA+EHIP +R++NL + ++ G G + Sbjct: 120 AVGAHGIIIPKRRAVGLTATVAKSSTGAIEHIPVVRVTNLARTVDELKERGLWIFGTDAK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + + LI+G+EGKG+ +E + L M G + +LN S AA++ +Y Sbjct: 180 GTVDYTKMDGSLPLGLIIGSEGKGMARLLKEKCDFLVSLPMVGKVTSLNASVAASLLMYE 239 Query: 276 TQNHF 280 Sbjct: 240 VFRKR 244 >gi|254671869|emb|CBA04093.1| putative RNA methyltransferase [Neisseria meningitidis alpha275] gi|319410442|emb|CBY90802.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase (23S rRNA Gm2251 2'-O-methyltransferase) [Neisseria meningitidis WUE 2594] gi|325128267|gb|EGC51152.1| RNA methyltransferase, TrmH family [Neisseria meningitidis N1568] Length = 261 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 93/283 (32%), Gaps = 26/283 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + + + + Q L GVH + Sbjct: 1 MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + + + + + + + V +V + KI + Sbjct: 43 LQSGRKPV-GVYIPEGKMPSEEVRRLRAVVPEGKVFSVSDGILKKISS-LTCADDVLALI 100 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + L A + +VLD V DP N+G +LRSA A ++ + + S + + Sbjct: 101 DIPDAGALPAGGDC---VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLR 157 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + GA + ++L L F T E + A + G EG Sbjct: 158 AGMGAHFLLDIYSQADLEIWLASYKGRVFATALREEKQAVLY-GEDLCEPTAWVFGNEGA 216 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G+ + A + M ++LNV+ AA + L+ + Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRS 259 >gi|227547938|ref|ZP_03977987.1| possible tRNA/rRNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] gi|227079949|gb|EEI17912.1| possible tRNA/rRNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] Length = 314 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 65/287 (22%), Positives = 124/287 (43%), Gaps = 24/287 (8%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN- 63 + K ++++ +H KL R RD S + + + G + V L+ Sbjct: 36 TPKAEDRVYH--SAHKRKLERQRRD----------SGRHEKEKADLVVGRNPVVECLHAK 83 Query: 64 -PSRKIFQLLAT-KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 P+ +F L T + PV VP + +D + G +HQG+ L+ P Sbjct: 84 VPAEALFVALGTAHDDRLSEAVTLANSKGLPVHEVPRRDLDTMTG-NGLHQGIGLKIQPY 142 Query: 122 LSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 + + + +VLD++ DP N+GA++RS AF G+I +R S + Sbjct: 143 KYADVFDLMAGVKDRGQTGMFVVLDNITDPRNLGAVIRSTAAFGGHGVIIPERRSAQVTG 202 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALIL 233 V ++++G +P + N+T +++ G+ +GL + + L+ D + +++ Sbjct: 203 VAWRTSAGTAARLPVAKAVNITRTIKEFKDNGYIVVGLDAGGEHTLDTFDGGADPVVIVV 262 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G+EGKG+ +E + + +++LN S AA V L Sbjct: 263 GSEGKGISRLVRENCDVLMSIPTESWVESLNASVAAGVVLSEFARQR 309 >gi|73541555|ref|YP_296075.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia eutropha JMP134] gi|72118968|gb|AAZ61231.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia eutropha JMP134] Length = 261 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 87/257 (33%), Gaps = 5/257 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ +K +++ + + L GVH A + + + +++ ++ Sbjct: 6 SRDNALFKHLKALATSTHQRRKAGQSLLDGVHLAQAYVAALGQPVSCVVSERHYDHAEVA 65 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V + V L L + +++ D + D Sbjct: 66 PLLAAVDSQRVVVLADVLFTQVSGVVNGIDLMLVIETPSGHLPARIEEDCIIL--DGLQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G+ILRSA A + + S ++ GA H+ + + ++ Sbjct: 124 AGNVGSILRSAAAAGIRHAFLGTGCAFAWSVKTLRAGMGANFHLNIVEHCTIDMLAPRLA 183 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + SS + + +A I+G EG G+ E + PG +++L Sbjct: 184 VPL---LATSSHADAAVFDTDLRGPVAWIVGNEGAGVSDAWMEHVARTVGIPQPGGLESL 240 Query: 264 NVSNAAAVALYITQNHF 280 NV A A+ L+ Sbjct: 241 NVGAATAICLFEAVRQR 257 >gi|330816741|ref|YP_004360446.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia gladioli BSR3] gi|327369134|gb|AEA60490.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia gladioli BSR3] Length = 249 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + + + ++L + R D + + + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMIDFLATAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ L+ LD ++ LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDLPLAQNLAELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + + +A AK ASGA + +PYI ++NL AL+++ G IG + D+ L Sbjct: 125 IIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTADDAGASLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +AL++GAEG+G+R T++T + ++ M G +++LNVS A+ V LY Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDDVMNIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|302339680|ref|YP_003804886.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta smaragdinae DSM 11293] gi|301636865|gb|ADK82292.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta smaragdinae DSM 11293] Length = 252 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 102/243 (41%), Gaps = 15/243 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG---- 106 +YG H + AL R +++ K+ V+ V + +D + G Sbjct: 7 IYGFHAIEEALKKRHRGAELMVSGKSKRISALIALAEQKGCKVRNVSREELDDLSGGVDH 66 Query: 107 ----------KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + + L L+++LD + DP N+GAILRSA Sbjct: 67 RGVLLFLSDAVSSGRKPPTNRDFDTVLQQLATREEQALILLLDGITDPQNLGAILRSADQ 126 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F+ D ++ +R S + AV+ K ++GA H+P + N+ A++ + GF + + Sbjct: 127 FAVDLVVLPERRSAGDGAVVDKVSAGASLHVPRSVVPNIPRAVEGLKKAGFW-VYGADMG 185 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K+A++LGAEG+G+ +E + + G I + NVS A + LY Sbjct: 186 GGSAWNFSLKGKVAMVLGAEGRGIGRLVRERCDEIISIPSRGHIDSFNVSVAGGILLYEC 245 Query: 277 QNH 279 + Sbjct: 246 RRQ 248 >gi|295839840|ref|ZP_06826773.1| 23S rRNA methyltransferase [Streptomyces sp. SPB74] gi|295827675|gb|EDY45612.2| 23S rRNA methyltransferase [Streptomyces sp. SPB74] Length = 270 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 50/264 (18%), Positives = 95/264 (35%), Gaps = 12/264 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + ++S + G V A + + ++ AT+ A R Sbjct: 10 RSPRVVAARRLAKRS-FRGKERRFLAEGPQAVREA----AEHLVEVYATEEAARRHPGLL 64 Query: 86 --NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 PV + + + + L +L+ VL HV D Sbjct: 65 DDARARGVPVLGASEEVLAAMADTVTPQGVIGLCRFLDTGFADVLAARPRLVAVLAHVRD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N G +LR A A D ++ T + +++ G+L H+P + +A+ + Sbjct: 125 PGNAGTVLRCADAAGADAVVLTDASVDVYNPKCVRASVGSLFHLPVATGVPIEEAVAGLR 184 Query: 204 SWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 G + + L+ E A + G E GL +T+ A ++ + + G Sbjct: 185 GIGVRVLAADGAGADDLDDELDRGTMGGPTAWVFGNEAWGLPEETRALADAVVRVPLHGK 244 Query: 260 IKALNVSNAAAVALYITQN-HFAK 282 ++LN++ AAAV LY + ++ Sbjct: 245 AESLNLATAAAVCLYASARAQRSR 268 >gi|126740104|ref|ZP_01755794.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. SK209-2-6] gi|126718923|gb|EBA15635.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. SK209-2-6] Length = 262 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 98/257 (38%), Positives = 146/257 (56%), Gaps = 8/257 (3%) Query: 28 RDYKKMQSFNQKSRHTSQP-ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + KK Q +K ++ +N++L+G+H V AL NP+R+ +L+ T NA +L DA Sbjct: 4 KPTKKPQWVIEKEQNKKAGVDNVWLFGLHAVRDALMNPNREKLRLIVTLNAQNKL-EDAI 62 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL---DAVRNSQLLMVLDHVND 143 + V P+ + + +VHQG ALE PL +L +++LD V D Sbjct: 63 AAAGITPEVVDPRRFNAPLDPNSVHQGAALEVKPLNWGSLAENCIGAEVPRVILLDRVTD 122 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GAILRSA +I T+ +S E+ LAK+ASGALE PY+R+ NL D + ++ Sbjct: 123 PHNVGAILRSAEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADTITELQ 182 Query: 204 SWGFQT---IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + GF G + D+ + Q K+ +AL+LGAEG GLR KT+ET + + G Sbjct: 183 NMGFVVLGLDGEAEDTIESCLQGRKDLPVALVLGAEGPGLRQKTKETVDHLVKIDASGGF 242 Query: 261 KALNVSNAAAVALYITQ 277 +LNVSNAAA+ALY ++ Sbjct: 243 GSLNVSNAAAIALYASK 259 >gi|293571651|ref|ZP_06682672.1| hypothetical tRNA/rRNA methyltransferase [Enterococcus faecium E980] gi|291608321|gb|EFF37622.1| hypothetical tRNA/rRNA methyltransferase [Enterococcus faecium E980] Length = 254 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 57/276 (20%), Positives = 101/276 (36%), Gaps = 24/276 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I LK H K R + E L G H + A Sbjct: 1 MKEIQSAKNPRIKELKKLHKKKYR-------------------EEKEEYLLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ V + +D + LA+ Sbjct: 42 -ASSDAEIKELFVTQRGRKEWGDWLAANKEISTFLVSDEVMDAVSDLPTPQGILAVMALT 100 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 101 AEGAPDFSGGW----LLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P ++ ++ L++ K+D A+I+G EG+G+ Sbjct: 157 QGSNYHLPVLQQDLTEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQGV 216 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + ++ M G ++LNV AA + LY Sbjct: 217 SQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252 >gi|237812095|ref|YP_002896546.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei MSHR346] gi|237503283|gb|ACQ95601.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei MSHR346] Length = 247 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + ++ ++ + A + + + Sbjct: 6 VLYGFHAVTARMRHDASTVAEVFYDATRRDRRMQDFLQAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ L+ LD + LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ + Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGRVESLNVSVASGVCLYEAVRQR 243 >gi|213962013|ref|ZP_03390278.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sputigena Capno] gi|213955366|gb|EEB66683.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sputigena Capno] Length = 245 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 113/245 (46%), Gaps = 11/245 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 Q + +YG+ + AL K+F + L + PV+ VP + ++ Sbjct: 2 QEQETQIYGIRALIEALKAGKTIDKVFLQKGLQGGLYKELMPLLQAAQVPVQYVPVEKLN 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ + HQG+ +P+ + + L +VLDH++D N GAI+R+A Sbjct: 62 RLT--KKNHQGVVANLSPVDYHNFEDLVISVTESGTTPLFLVLDHLSDVRNFGAIIRTAE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 GII KR S S +A K+++GA+ +P ++ NL DA+ + G + + + Sbjct: 120 CTGVSGIIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQGSGIRVVATTEK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + L E A+++GAE G+ P + S A L M G I +LNVS A AV LY Sbjct: 180 TNQLLYAEDFTVPTAIVMGAEDVGVSPAVLKVVDSKAKLPMVGDISSLNVSVACAVFLYE 239 Query: 276 TQNHF 280 Sbjct: 240 VVKQR 244 >gi|114799377|ref|YP_761548.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444] gi|114739551|gb|ABI77676.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC 15444] Length = 271 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 47/270 (17%), Positives = 89/270 (32%), Gaps = 6/270 (2%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 +K ++ K ++S ++ + ++ G VS L + ++A Sbjct: 1 MKQPLELITSPSNPLIKALKSL-ERKKERAETGLFLAEGARIVSEGLARGWQPETVIIAA 59 Query: 75 KNALARLDWDANLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLL-SPTLDAVR 130 A D V P + + KI K+ +A L +L Sbjct: 60 DMAERPQISDLARAAAKAGARVVMAPERLMTKITQKDNAQSVVAAFRQRHLGVESLPKPA 119 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + L + L V DP N+G ILR+A G+I + A AS Sbjct: 120 GTPLYIALYEVRDPGNLGTILRTADCAGVSGVILI-GTCCDPYSFEAVRASMGSVFDVPF 178 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ G S + + +++G E GL + + Sbjct: 179 AHTDFDAFNTWRKGEGMSLTAASVNGTVRHDGADFTGGSIILMGNEQAGLPDWVEAACDT 238 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + M G +LN++ A+A+ +Y Sbjct: 239 LSLIPMRGGADSLNLAQASALMIYEAWRQR 268 >gi|213965128|ref|ZP_03393326.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium amycolatum SK46] gi|213952242|gb|EEB63626.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium amycolatum SK46] Length = 314 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 57/274 (20%), Positives = 117/274 (42%), Gaps = 11/274 (4%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN---PSRKIFQLLA 73 + H+ + + + + G + V L+ + I L Sbjct: 36 KAEDRVYHAAHKRANEKRRRDSGRHERKGDGTELVVGRNPVVECLHAKVPAAALIVALGT 95 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----- 128 + + P++ VP +D + G +HQG+ L+ +++ Sbjct: 96 DNDERLQESVRIANSRGIPIREVPRHELDTMTG-NTMHQGIGLQIPSYKYSSVEDLIDSV 154 Query: 129 --VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 L++ LD++ DP N+GA++RS AF G++ +R S + + V ++++G Sbjct: 155 AKTGEPGLIVCLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSAAITGVAWRTSAGTAAR 214 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +P R +N+ +L++ G+Q +GL + L+ + +++G+EGKGL ++ Sbjct: 215 LPVARATNMVRSLKQFQKAGYQIVGLDAGGDHTLDTYDGTTPVVVVVGSEGKGLSRLVRD 274 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T ++ + M G +++LN S AA V L Sbjct: 275 TCDTIMSIPMTGWVESLNASVAAGVTLSEFARQR 308 >gi|168335308|ref|ZP_02693406.1| tRNA/rRNA methyltransferase (SpoU) [Epulopiscium sp. 'N.t. morphotype B'] Length = 262 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 87/255 (34%), Gaps = 7/255 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K ++ K + + G V L N ++ + + ++ Sbjct: 11 NPIIKNVKELQSKKSTRQKESLFVVXGTRAVHD-LANTMEILYFI------ATQNIDXSD 63 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 TV I + +A+ S ++ + ++L+ + DP N Sbjct: 64 YNPKTQWITVSDNVYTHISDTKTPQGLMAIVKQRNKSLNDFTIKQNGTYLILEGIKDPGN 123 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G I+R+A D I TK S + ++ GA+ I IR +T + Sbjct: 124 LGTIVRTAYGLFVDAIFLTKDCVELYSPKVVRATMGAISKIDIIRNYEMTSYVDFFRENK 183 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + L + A+++G E G+ T+ A S + +++LN + Sbjct: 184 VKIYATDLYQSNNLYTTKFDGSSAIVIGNEATGISEYTRAQADSTIKIPTRDNLESLNAA 243 Query: 267 NAAAVALYITQNHFA 281 A ++ LY Sbjct: 244 IATSIVLYEVARQKN 258 >gi|241888871|ref|ZP_04776177.1| RNA methyltransferase, TrmH family, group 3 [Gemella haemolysans ATCC 10379] gi|241864547|gb|EER68923.1| RNA methyltransferase, TrmH family, group 3 [Gemella haemolysans ATCC 10379] Length = 271 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 73/270 (27%), Positives = 129/270 (47%), Gaps = 16/270 (5%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQP-----ENLFLYGVHTVSAALNNPSRKIFQLL--ATK 75 +++N++ YK+++ N++ + Q + + G + + A+ + L + Sbjct: 1 MKKNNKHYKELRLKNKEQKPQVQTPEVDLDKEVIAGRNAILEAIKSGREINKILFQEGIE 60 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------V 129 + + + VP + +D + HQG+ AP LD + Sbjct: 61 KGRLKSIFAIANEKKIICQEVPKRKLDNSTTER--HQGVIAYVAPYSYFELDEVVNNLEI 118 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 L++LDH+ DPHN+GAI+R+A A II KR + S K+++GA+EH+P Sbjct: 119 NKDTTLLILDHIEDPHNLGAIIRTAEASGVKAIIIPKRRAAVVSQTAVKASAGAIEHMPV 178 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETA 248 IR+SNLTDA++K+ GF G + + +I D +A+++G EG+G+ Sbjct: 179 IRVSNLTDAIKKLKEKGFWIAGTTLAERSEDYTKIAKDVPLAIVIGNEGEGMSKVVTNEC 238 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + HL M G I++LN S AA + +Y Sbjct: 239 DFLYHLPMLGKIQSLNASVAAGIIMYERIK 268 >gi|163782847|ref|ZP_02177843.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1] gi|159881968|gb|EDP75476.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1] Length = 239 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 100/237 (42%), Gaps = 5/237 (2%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++G + + AL +A + R ++ V Q ++++ G + Sbjct: 4 FVVWGRNPIIEALRAGRDVEKIYVAHDSHPPRELIRLAKEKGVKLQKVSRQKVEELAGTK 63 Query: 109 AVHQGLA--LETAPLLSPTL--DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 +A + + L + ++ + +V DH+ DP N+G +LR+ G + Sbjct: 64 KTQGVVALLSPVSYVAPQELFSETIKRNSFFLVTDHITDPQNVGNLLRTCEVLGGVGALI 123 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + S + + K++SGA+ H+ +++NL L++ G + K E EI Sbjct: 124 PRERSSPMNQTVVKASSGAIFHLEISKVANLGRVLKEFKEMGGWVFAVEKGGKDIRELEI 183 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 AL+LG+E KG+ E + + + M G +LNV +A A+A++ Sbjct: 184 -VLPCALVLGSEDKGVSKSLLEVSDEVLSIPMKGKTTSLNVGSAGAIAMWEAVRKLI 239 >gi|300776744|ref|ZP_07086602.1| RNA methyltransferase [Chryseobacterium gleum ATCC 35910] gi|300502254|gb|EFK33394.1| RNA methyltransferase [Chryseobacterium gleum ATCC 35910] Length = 249 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 97/242 (40%), Gaps = 11/242 (4%) Query: 47 ENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 ++ F++G+ V A+ KIF A + + + VP + +++ Sbjct: 2 KDDFIFGLRPVIEAIEAGKTIDKIFVQNALQGPIYAELKAILAKNKIRPNYVPVEKLNRF 61 Query: 105 VGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+ + + L + L++LD + D N GAI R+A Sbjct: 62 T--RKNHQGVVAFISDVPFHKVEDIVPQLFEQGKTPFLLILDRLTDVRNFGAICRTAECV 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D +I ++ + ++ K+++GA+ +I + +NL + + G S ++ Sbjct: 120 GIDAVIIPEKGAAPINSDAIKTSAGAIYNIKICKENNLAHTVDFLQQSGISVYAASEKAQ 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K + + A+++G E G+ + A L + G ++LNVS A LY Sbjct: 180 KLIYDVNMTEPCAIVMGNEETGISKEVLHHADEKIKLPIEGKTQSLNVSVACGAILYEAV 239 Query: 278 NH 279 Sbjct: 240 RQ 241 >gi|222152573|ref|YP_002561748.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J] gi|222113384|emb|CAR41028.1| SpoU rRNA Methylase family protein [Streptococcus uberis 0140J] Length = 245 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 10/231 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + + + G H A + + I + T+ + P+ V P+ + + Sbjct: 22 HRKNSYLIEGWHLFEEAQKS-KQPILSVFLTEE------LENFKNSECPIYIVTPEVLKE 74 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + + +A P L LL + V DP N+G ++R+A A DG+I Sbjct: 75 LTESPSPQGIVAEIAMPDSPLPLSQKGKYLLL---EDVQDPGNLGTMIRTADAACFDGVI 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +++ + +S G+ H+P R + + S + Sbjct: 132 LSEKTVDLYNQKTLRSMQGSHFHLPVWRTDVYSFCQTIQSNGVPVLATTLSKDSIDYKAL 191 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +ND L++G EG+G+ + A + H++MPG ++LNV+ AA + ++ Sbjct: 192 PQNDSFVLVMGNEGRGISDEMAALANQLVHINMPGQAESLNVAVAAGILIF 242 >gi|256819567|ref|YP_003140846.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga ochracea DSM 7271] gi|256581150|gb|ACU92285.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga ochracea DSM 7271] Length = 244 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 111/239 (46%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG+ + AL K+F + L R PV+ VP + ++++ + Sbjct: 7 IYGIRALIEALKAGKTIDKVFLQKGLQGVLFRELMPLLQEAQVPVQYVPVEKLNRLT--K 64 Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ +P+ + + L +VLDH++D N GAI+R+A G Sbjct: 65 KNHQGVVANLSPVDYHNFEDLVISVTESGATPLFLVLDHLSDVRNFGAIIRTAECTGVSG 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II KR S S +A K+++GA+ +P ++ NL DA+ + G + + + + + L Sbjct: 125 IIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQGSGIRVVAATEKTSQLLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E A+++GAE G+ P + S A L M G I +LNVS A AV LY Sbjct: 185 TEDFTVPTAIVMGAEDVGVSPAVLKVVDSKAKLPMVGDISSLNVSVACAVFLYEALKQR 243 >gi|227488138|ref|ZP_03918454.1| TrmH family rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227092000|gb|EEI27312.1| TrmH family rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] Length = 436 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 96/257 (37%), Gaps = 3/257 (1%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 ++S + + + G ++V AA+ + L + A A Sbjct: 109 PRVVNAAKL-KRSAVRKKEKRFLVEGENSVEAAVATGAATDIFLTKSAAARFTDIVAAAK 167 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V + + + A+ L S +L+ V N+P N Sbjct: 168 AMGMYVHFIDEKAAKSLQDTVTSTGIFAVCREVLWSARDVLNGRPKLVSVPVETNEPGNA 227 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ++R A A D ++ +S A+S++G+L HIP R N+ + + G Sbjct: 228 GTLIRVADAMGADCVLFAGDTVDPQSGKAARSSAGSLFHIPVARERNIMKVVSMLRERGL 287 Query: 208 QTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 ++D + L + A + G E GL + Q A + + G ++LN+ Sbjct: 288 AIAATAADGEVDLTDAEDLLSQPTAWLFGNEAHGLPEEVQAQADYRVRIPIRGRAESLNL 347 Query: 266 SNAAAVALYITQNHFAK 282 + AA++ L+ + + AK Sbjct: 348 ATAASICLFESSKYQAK 364 >gi|114319742|ref|YP_741425.1| RNA methyltransferase [Alkalilimnicola ehrlichii MLHE-1] gi|114226136|gb|ABI55935.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Alkalilimnicola ehrlichii MLHE-1] Length = 246 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 104/244 (42%), Gaps = 9/244 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTID 102 E LYG+H V AA + I + K ++ V + +D Sbjct: 2 SEPELLYGLHAVRAAAACDADAIEAVWVEKGRRDAKLVRVLRSLEGRGLRIQRVSRKQLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 ++ P LD + L+VLD V DPHN+GA LRSA A Sbjct: 62 ELTEGGVHQGVAIRYRGPRPLDDNDLDACLDGLSGPAFLLVLDQVQDPHNLGACLRSAEA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I + + + V+ K +SGA +PY +++NL L + G +G + ++ Sbjct: 122 AGVHGVIAPRDRAAGLTPVVHKVSSGAAARVPYFQVTNLARTLAGLRDRGIWLVGAAGEA 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +AL +GAEG+GLR T+E + H+ M G +++LNVS A V L+ Sbjct: 182 GAAHWEADLTGPLALCMGAEGRGLRRLTREACDLLVHIPMAGRVESLNVSVATGVVLWEA 241 Query: 277 QNHF 280 Sbjct: 242 LRQR 245 >gi|309777273|ref|ZP_07672235.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae bacterium 3_1_53] gi|308914953|gb|EFP60731.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae bacterium 3_1_53] Length = 237 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 105/233 (45%), Gaps = 9/233 (3%) Query: 54 VHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 + V L + I ++L + + PVK + + +D+++ HQG Sbjct: 5 KNVVKQLLQDGKT-IHEVLIQEGIRDTALENEIRKKQIPVKVLGRKKMDQLL--NGNHQG 61 Query: 114 LALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 +A + L+ LL++LD + DPHN+GAILR+ DG+I K Sbjct: 62 IAASIDDYKTWELEELLEAIPQGKQPLLVMLDGLEDPHNLGAILRTCDCIGADGVIIGKH 121 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + + +AK ++GA++ + ++NL A++ + G+ +G ++ + + + Sbjct: 122 RNVRLTPTVAKVSTGAIDTVKVSVVTNLAQAIKYLKKQGYWVVGTDFENSRDYREGQYDV 181 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L++G+EG G+ ++ L M G + +LN S AA + LY Sbjct: 182 PLVLVIGSEGFGISSLVKKNCDYCVRLPMEGSVSSLNASVAAGILLYQIHAQR 234 >gi|254294115|ref|YP_003060138.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814] gi|254042646|gb|ACT59441.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814] Length = 275 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 89/256 (34%), Gaps = 5/256 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K ++ ++K + + G + AL + + L+ ++ Sbjct: 13 SNPTIKLLRGLDRK-KVRNDTGLFLAEGARLIVDALKFGWKPKYVLVGSETIDRPDIQHV 71 Query: 86 N---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 T + + + K+ +A + + + L Sbjct: 72 ISQCAEIGARTLTTSSRILSAVSRKDNPQTIIAAFEQQTTTLEALETSGKKRFIALYEAR 131 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ILR+A A DG+I ++ S ++ GAL I +++ T+ Sbjct: 132 DPGNLGTILRTADAAGIDGVILVEQCCDPFSVECVRATMGALF-SNNIVLASFTEFDNWR 190 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + S + +Q + K +++G E G+ + + + M G + Sbjct: 191 RKANIKMAAASVNGTMRHDQAEYSSKSVILMGNEQSGIPEAAENACDILIKIPMAGAADS 250 Query: 263 LNVSNAAAVALYITQN 278 LN++ A A+ Y Sbjct: 251 LNLAQATAIMTYEVWK 266 >gi|58038971|ref|YP_190935.1| 23S rRNA methyltransferase [Gluconobacter oxydans 621H] gi|58001385|gb|AAW60279.1| 23S rRNA methyltransferase [Gluconobacter oxydans 621H] Length = 282 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 96/231 (41%), Positives = 137/231 (59%), Gaps = 6/231 (2%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++YG H V AAL NP R I LAT+ A A + + P V + +D++ ++ Sbjct: 55 YWIYGHHAVQAALANPERVIHDFLATREAAASFENASRKPQ-----IVDRERLDRLCERD 109 Query: 109 AVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 AVHQG+ L PL + + D V ++VLD V DP NIGAILRSA AF ++ R Sbjct: 110 AVHQGVCLRVEPLETLAIPDIVERKGPVLVLDQVTDPRNIGAILRSAAAFGAAALLVQDR 169 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 +P ES +AK+ASGAL+ +P +R NL+ ALQ + + F +GL + + + Sbjct: 170 NAPQESGAMAKAASGALDVVPILREVNLSRALQALQAENFWVVGLDAGGTRLDGKSFAGR 229 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++AL+LGAEG GLR T+ET +A ++MPG +++LNVSNAAAVALY Sbjct: 230 RVALVLGAEGAGLRRLTRETCDEIASVYMPGDMESLNVSNAAAVALYELVR 280 >gi|331269142|ref|YP_004395634.1| rRNA methylase [Clostridium botulinum BKT015925] gi|329125692|gb|AEB75637.1| rRNA methylase [Clostridium botulinum BKT015925] Length = 260 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 58/284 (20%), Positives = 105/284 (36%), Gaps = 26/284 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN I K + I +K K + +Q + G V A Sbjct: 1 MNKIESKDNSLIKDIKKLSKKK-------------------YRTQEAKFLVEGFRFVQEA 41 Query: 61 LNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + + L++ + + V V + ++ LA+ Sbjct: 42 LKSTFEVPYVLISEDANEKCDSFNIYELIQDNTKVYLVRDDILKEVCDTNNPQGILAVV- 100 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + ++ +++D + DP N+G I+RSA A G+ITTK + + Sbjct: 101 ---NNKVMEIEDQEGFYVLVDRIQDPGNMGTIIRSANASGALGVITTKGTVDVYNDKTLR 157 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 S G++ IP + ++ + L+ + S GF+ + S D+K K + +G EG Sbjct: 158 STMGSIFKIPIVEDNDF-EVLKNLKSKGFKVVVSSLDTKNNFYDIDLTGKSIICVGNEGN 216 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G+ E + MPG ++LN AA++ +Y K Sbjct: 217 GVSDYIYELGDEKVKIPMPGDAESLNAGVAASIMMYEVVRQTQK 260 >gi|301301196|ref|ZP_07207352.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851195|gb|EFK78923.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius ACS-116-V-Col5a] Length = 253 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 97/253 (38%), Gaps = 6/253 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K+ + N K + + L G+H V AL + L+ +K + Sbjct: 7 SNSRVKEWKKLNTK-KGRKRQNKYILDGLHLVKEALKVNKKVEELLITSK---FEHLNEI 62 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 +P V + + I + QG+ + ++ ++LD V DP Sbjct: 63 EIPDETKVIMISEEVSKSISETQ-TPQGIFGIVSIEEEKITYPQKDVGAWLMLDGVQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIG ++R+A A G+I + + + + ++ G HI I + Sbjct: 122 NIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGCQFHIKVINDNLSGWIRHFKDMK 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 ++ + ++ AL++G EG G+ + E + ++ + ++LNV Sbjct: 182 VPVFGSELNEHAREYTNVGQHTDFALVMGNEGNGMSKEILEMTSINLYIPIT-NAESLNV 240 Query: 266 SNAAAVALYITQN 278 + AA + ++ + Sbjct: 241 AVAAGILMFALKK 253 >gi|225019250|ref|ZP_03708442.1| hypothetical protein CLOSTMETH_03203 [Clostridium methylpentosum DSM 5476] gi|224947881|gb|EEG29090.1| hypothetical protein CLOSTMETH_03203 [Clostridium methylpentosum DSM 5476] Length = 259 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 100/257 (38%), Gaps = 4/257 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R + K + + L GV ++ A+ + + ++L T+N L + + Sbjct: 4 SRENETVKLFAKLSGSKKQRDASGLFCLEGVRLIADAVRSGVT-LEKILITENCLQKYNH 62 Query: 84 DAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + L + T+ + K+ ++ A+ + D +++ + L Sbjct: 63 ELAEMLAINGKMNTISGELAGKLSDVKSPQGVFAIAKKLDKTLDTDTIKSGGCYLALCST 122 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP NIG ++R+A A DG++ S + +S G+L + + +L Sbjct: 123 QDPGNIGTMIRTADALGIDGVLLH-NTCDIYSPKVVRSTMGSLFRMRFALCPDLLGLTAS 181 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 +++ G T + P+ + + L +G EG GL + M G + Sbjct: 182 LNACGVDTCAAVVEDALPVTRASFSGPRVLYIGNEGNGLPDSIAFACARRITIPMRGNAE 241 Query: 262 ALNVSNAAAVALYITQN 278 +LN ++AAA+ ++ Sbjct: 242 SLNAASAAAILMWEMTK 258 >gi|253731748|ref|ZP_04865913.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724562|gb|EES93291.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 246 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ +I +K R + + GVH + A Sbjct: 1 MEQITSAQNNRIKQANKL-------------------KKKRERDKTGLALIEGVHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I QL A + A + + V + + + + G QG Sbjct: 42 YQSGI-VITQLFAIEPAR---LDQQIIAYAQEVFEINMKVAESLSG-TVTPQGFFAIIEK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + +Q ++++D V DP N+G ++R+A A D +I K + + +++ Sbjct: 97 PHYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P + T Q + + K+ + AL+LG EG+G+ Sbjct: 153 QGSVFHLPVMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSF----ALLLGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P+ T + + G ++LNV+ A ++ LY + Sbjct: 209 NPELLAHTTQKLIIPIYGKAESLNVAIAGSILLYHLK 245 >gi|218895227|ref|YP_002443638.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9842] gi|218542507|gb|ACK94901.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9842] Length = 247 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 115/243 (47%), Gaps = 13/243 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ G + V AL + R I ++ + A ++ + ++ P + +D++ Sbjct: 3 SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKVILQHAPKKKLDQL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E HQG+ + A L+ ++LD + DPHN+G+I+R+A A Sbjct: 62 V--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G G + K Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 I L++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 180 TDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239 Query: 278 NHF 280 Sbjct: 240 RKR 242 >gi|22218790|pdb|1IPA|A Chain A, Crystal Structure Of Rna 2'-O Ribose Methyltransferase Length = 274 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 88/253 (34%), Gaps = 6/253 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K++ ++ +H + G + AL L+ Sbjct: 8 NPRIKELARLLER-KHRDSQRRFLIEGAREIERALQAGIELEQALVWEGGLNPEEQQVYA 66 Query: 87 LPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + V + K+ ++ +AL P + L++V + Sbjct: 67 ALGRVGRLALLEVSEAVLKKLSVRDNPAGLIALARMPERTLEEYRPSPDALILVAVGLEK 126 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GA+LRSA A + ++ V+ S + ++ ++ L + Sbjct: 127 PGNLGAVLRSADAAGAEAVLVAGGVDLYSPQVIRN--STGVVFSLRTLAASESEVLDWIK 184 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + ++ + +A+ +G E +GLR E A + + M G +L Sbjct: 185 QHNLPLVATTPHAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSL 244 Query: 264 NVSNAAAVALYIT 276 NVS +AA+ LY Sbjct: 245 NVSVSAALLLYEA 257 >gi|224542352|ref|ZP_03682891.1| hypothetical protein CATMIT_01531 [Catenibacterium mitsuokai DSM 15897] gi|224524734|gb|EEF93839.1| hypothetical protein CATMIT_01531 [Catenibacterium mitsuokai DSM 15897] Length = 241 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 64/239 (26%), Positives = 110/239 (46%), Gaps = 8/239 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++YG +TV L R++ +++ + + ++ K+VG Sbjct: 2 KEWIYGKNTVRELL-TGPRQVHEVMIQNQSKNDDIVKLCRKNNIKMRMTDKNGFIKLVG- 59 Query: 108 EAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ L+ + LL++LD + DPHN+GAI+R+ A DG Sbjct: 60 NVNHQGVMALIDGYDYTPLEDIVRNIPEGKQPLLLMLDGMEDPHNLGAIIRTCDAIGVDG 119 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K+ S +A +AK ++GA++H+P +++NL+ L + GF +G D+ Sbjct: 120 VIIGKKRSVGLNATVAKVSTGAIDHVPVAQVTNLSRTLDSLKKEGFWVVGCELDNSTDYR 179 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 N + L++G+EG G+ +E L M G + +LN S A AV LY N Sbjct: 180 AVDYNMPLVLVIGSEGFGISRLVKEHCDMNVILPMVGHVNSLNASVATAVLLYQVYNSR 238 >gi|254468840|ref|ZP_05082246.1| tRNA/rRNA methyltransferase [beta proteobacterium KB13] gi|207087650|gb|EDZ64933.1| tRNA/rRNA methyltransferase [beta proteobacterium KB13] Length = 257 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 103/259 (39%), Gaps = 7/259 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K+++ + + + G H + A L N L +++ Sbjct: 6 SKDNSRLKELRKVQHNKSYRQENNLTIIEGPHLLEAYL-NEKNDFLALFCSESFNKNYPE 64 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + +P + I + G+ + + + + + LD V D Sbjct: 65 YCKKGWEERIYILPDNFFNDIS-ELKTPIGILALIEIPQNDSYPNHFHDGMYLFLDKVQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ILR++ A GI +++ + S +++ G +P + ++++ + Sbjct: 124 PGNLGTILRTSQALGHKGIFLSEQCADPWSPKTLRASQGFQFQLPIYQNVDISNLISHGF 183 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 S+ + S + K LILG+EG+G+ K ++ A L M +++L Sbjct: 184 SFVVADLNGQSVFDYN-----FSHKTILILGSEGQGVTTKLKDIAHDEISLPMMNNVESL 238 Query: 264 NVSNAAAVALYITQNHFAK 282 NV+ +AA+ Y N F + Sbjct: 239 NVAVSAAIIGYQFLNQFNR 257 >gi|227551945|ref|ZP_03981994.1| TrmH family RNA methyltransferase [Enterococcus faecium TX1330] gi|257895463|ref|ZP_05675116.1| RNA methyltransferase [Enterococcus faecium Com12] gi|293378329|ref|ZP_06624498.1| RNA methyltransferase, TrmH family [Enterococcus faecium PC4.1] gi|227178850|gb|EEI59822.1| TrmH family RNA methyltransferase [Enterococcus faecium TX1330] gi|257832028|gb|EEV58449.1| RNA methyltransferase [Enterococcus faecium Com12] gi|292643193|gb|EFF61334.1| RNA methyltransferase, TrmH family [Enterococcus faecium PC4.1] Length = 254 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 58/276 (21%), Positives = 102/276 (36%), Gaps = 24/276 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I LK H K R + E L G H + A Sbjct: 1 MKEIQSAKNPRIKELKKLHKKKYR-------------------EEKEEYLLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ V + +D + A LA+ Sbjct: 42 -ASSDAEIKELFVTQRGRKEWGDWLAANKEISTFLVSDEVMDAVSDLPAPQGILAVMALT 100 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 101 AEGAPDFSGGW----LLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P ++ ++ L++ K+D A+I+G EG+G+ Sbjct: 157 QGSNYHLPVLQKDLTEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQGV 216 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + ++ M G ++LNV AA + LY Sbjct: 217 SQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252 >gi|223934291|ref|ZP_03626214.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis 89/1591] gi|330833534|ref|YP_004402359.1| TrmH family RNA methyltransferase [Streptococcus suis ST3] gi|223897038|gb|EEF63476.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis 89/1591] gi|329307757|gb|AEB82173.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis ST3] Length = 242 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 112/240 (46%), Gaps = 9/240 (3%) Query: 46 PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YGVH V +L K++ + + P +T+ + Sbjct: 2 EHNDIVYGVHAVVESLEANTGNKLYIQDDLRGKNVEKIKALAAEKKVSISWTPKKTLSDM 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG L + L ++ L+++LD + DPHN G+ILR+A A Sbjct: 62 T-EGAVHQGFVLRVSEFAYADLSVILEKAEQEDNPLILILDGLTDPHNFGSILRTADATQ 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII K + + V+AK+++GA+ H+P R++NL+ L K+ GF G + Sbjct: 121 VAGIIIPKHRAVGVTPVVAKTSTGAVAHVPIARVTNLSQTLDKLKEAGFWVFGTDMNGTP 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+ALI+G EGKG+ ++ M + M G +++LN S AAAV +Y Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISSNIKKQVDEMITIPMKGHVQSLNASVAAAVLMYEVFR 239 >gi|326383075|ref|ZP_08204764.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis NRRL B-59395] gi|326198211|gb|EGD55396.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis NRRL B-59395] Length = 318 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 58/256 (22%), Positives = 106/256 (41%), Gaps = 13/256 (5%) Query: 37 NQKSRHTSQP--ENLFLYGVHTVSAALNN--PSRKIFQLL-ATKNALARLDWDANLPHPF 91 N + H ++ G + V L P+ ++ + + + Sbjct: 61 NTRRTHRKSEDGGPEYVVGRNPVVECLRAEVPATALYVMTTIDADERVKEAVHTAGDRGI 120 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDP 144 + V +D++ +HQGLAL+ + ++ LL+ LD++ DP Sbjct: 121 SILEVGKPELDRMS-PNGLHQGLALQVPEYQYAHPEDLMADALAGSSAPLLVALDNITDP 179 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GA++RS AF G++ +R S +AV ++++GA +P NL L Sbjct: 180 RNLGAVIRSVAAFGGHGVVIPQRRSAGMTAVAWRTSAGAAARLPVATTPNLNRTLLDWAK 239 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G Q +GL + L+ +++G+EGKGL +E S+ + + +++LN Sbjct: 240 KGAQIVGLDAGGDVSLDDYDGTGPTVIVVGSEGKGLSRLVRENCDSILSIPIASDVESLN 299 Query: 265 VSNAAAVALYITQNHF 280 S AA V L Sbjct: 300 ASVAAGVVLSEFARQR 315 >gi|296111277|ref|YP_003621659.1| rRNA methylase [Leuconostoc kimchii IMSNU 11154] gi|295832809|gb|ADG40690.1| rRNA methylase [Leuconostoc kimchii IMSNU 11154] Length = 257 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 54/274 (19%), Positives = 112/274 (40%), Gaps = 23/274 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M+ I ++ ++ + K K R+ +R Y L G H V A Sbjct: 1 MDRILSNQNSRVKAWKKLATKKGRQENRTY-------------------LLDGWHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + K ++AT+ +A D PH P + + I G QG+ E + Sbjct: 42 IKASA-KFHAVMATEEQMATHLPDV--PHGVPAFEISDEVAKHIAG-TNTPQGIFAEISL 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + ++LD++ DP N+G ++R+A A G++ + + + S + ++ Sbjct: 98 PDKTFDPTYVHDGAWLLLDNIQDPGNVGTLVRTADAAGFKGVVFGEGTADAYSPKVVRAM 157 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+ + A + ++S + + + ALI+G EG+G+ Sbjct: 158 QGSQFHLEVLNGDLNEWADALTANNLSVYGSQLNESAQSYRAIEPSTQFALIVGNEGQGM 217 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E T+ ++ + G ++LNV+ A + ++ Sbjct: 218 SNELAEKTTTNLYIPIQGQAESLNVAIAGGILMF 251 >gi|134282338|ref|ZP_01769043.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 305] gi|134246376|gb|EBA46465.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 305] Length = 260 Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + ++ ++ + A + + + Sbjct: 19 VLYGFHAVTARMRHDASTVAEVFYDATRRDRRMQDFLQAAKEAGVRLIAADETRLWGLAH 78 Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ L+ LD + LL+VLD V DPHN+GA LR A A Sbjct: 79 TER-HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 137 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ + Sbjct: 138 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVY 197 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 198 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQR 256 >gi|76810371|ref|YP_333368.1| RNA methyltransferase [Burkholderia pseudomallei 1710b] gi|217423817|ref|ZP_03455318.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 576] gi|238563304|ref|ZP_00439092.2| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei GB8 horse 4] gi|242316025|ref|ZP_04815041.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1106b] gi|251767767|ref|ZP_02268341.2| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei PRL-20] gi|254197285|ref|ZP_04903707.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei S13] gi|76579824|gb|ABA49299.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1710b] gi|169654026|gb|EDS86719.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei S13] gi|217393675|gb|EEC33696.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 576] gi|238520972|gb|EEP84427.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei GB8 horse 4] gi|242139264|gb|EES25666.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1106b] gi|243061768|gb|EES43954.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei PRL-20] Length = 260 Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + ++ ++ + A + + + Sbjct: 19 VLYGFHAVTARMRHDASTVAEVFYDATRRDRRMQDFLQAAKEAGVRLIAADETRLWGLAH 78 Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ L+ LD + LL+VLD V DPHN+GA LR A A Sbjct: 79 TER-HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 137 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ + Sbjct: 138 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVY 197 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 198 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQR 256 >gi|53719486|ref|YP_108472.1| putative tRNA/rRNA methyltransferase [Burkholderia pseudomallei K96243] gi|53723479|ref|YP_102933.1| RNA methyltransferase [Burkholderia mallei ATCC 23344] gi|121601104|ref|YP_993068.1| RNA methyltransferase [Burkholderia mallei SAVP1] gi|124385837|ref|YP_001026152.1| RNA methyltransferase [Burkholderia mallei NCTC 10229] gi|126440617|ref|YP_001058836.1| RNA methyltransferase [Burkholderia pseudomallei 668] gi|126449600|ref|YP_001080577.1| RNA methyltransferase [Burkholderia mallei NCTC 10247] gi|126453075|ref|YP_001066084.1| RNA methyltransferase [Burkholderia pseudomallei 1106a] gi|167719760|ref|ZP_02402996.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei DM98] gi|167738755|ref|ZP_02411529.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 14] gi|167815979|ref|ZP_02447659.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 91] gi|167824352|ref|ZP_02455823.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 9] gi|167845895|ref|ZP_02471403.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei B7210] gi|167894463|ref|ZP_02481865.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 7894] gi|167902867|ref|ZP_02490072.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei NCTC 13177] gi|167911108|ref|ZP_02498199.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 112] gi|167919128|ref|ZP_02506219.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei BCC215] gi|254177694|ref|ZP_04884349.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei ATCC 10399] gi|254179938|ref|ZP_04886537.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1655] gi|254188656|ref|ZP_04895167.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei Pasteur 52237] gi|254199876|ref|ZP_04906242.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei FMH] gi|254206204|ref|ZP_04912556.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei JHU] gi|254259237|ref|ZP_04950291.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1710a] gi|254358375|ref|ZP_04974648.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei 2002721280] gi|52209900|emb|CAH35872.1| putative tRNA/rRNA methyltransferase [Burkholderia pseudomallei K96243] gi|52426902|gb|AAU47495.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei ATCC 23344] gi|121229914|gb|ABM52432.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei SAVP1] gi|124293857|gb|ABN03126.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei NCTC 10229] gi|126220110|gb|ABN83616.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 668] gi|126226717|gb|ABN90257.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1106a] gi|126242470|gb|ABO05563.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei NCTC 10247] gi|147749472|gb|EDK56546.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei FMH] gi|147753647|gb|EDK60712.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei JHU] gi|148027502|gb|EDK85523.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei 2002721280] gi|157936335|gb|EDO92005.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei Pasteur 52237] gi|160698733|gb|EDP88703.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei ATCC 10399] gi|184210478|gb|EDU07521.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1655] gi|254217926|gb|EET07310.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1710a] Length = 247 Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + ++ ++ + A + + + Sbjct: 6 VLYGFHAVTARMRHDASTVAEVFYDATRRDRRMQDFLQAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ L+ LD + LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ + Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|134295618|ref|YP_001119353.1| RNA methyltransferase [Burkholderia vietnamiensis G4] gi|134138775|gb|ABO54518.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia vietnamiensis G4] Length = 247 Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 117/239 (48%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + ++L + + + A + + + Sbjct: 6 VLYGFHAVTARMRHDASTVAEVLYDQTRRDRRMQEFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ + S LD ++ LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDVPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +A AK ASGA + +PYI ++NL AL+++ G IG + ++ L Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWIIGTADEASGTLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A+++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 DTKLDGPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|315499721|ref|YP_004088524.1| RNA methyltransferase, trmh family, group 3 [Asticcacaulis excentricus CB 48] gi|315417733|gb|ADU14373.1| RNA methyltransferase, TrmH family, group 3 [Asticcacaulis excentricus CB 48] Length = 322 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 78/288 (27%), Positives = 127/288 (44%), Gaps = 17/288 (5%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 K K YA + + K + +++G+H V AAL N Sbjct: 31 QSKPYAKDKPRDKGGYAPAQTARSQTQTHAQARPKPPVRVSEDG-WIWGLHAVEAALKNQ 89 Query: 65 SRK-IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 SR +L T + L+ A V+ + + AVHQG+AL PL Sbjct: 90 SRLGPIRLYVTPDRQKALEQVAPKRGDLHVRLTEMAEFSGFLPQGAVHQGVALNGPPLEG 149 Query: 124 PTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 L+ + +L++LD V DP NIGAILR+ AF G+I R+SP VLA Sbjct: 150 DDLNGLMEGALRQERPVLVMLDQVTDPQNIGAILRTCAAFGAAGLIMQDRHSPVMQGVLA 209 Query: 178 KSASGALEHIPYIRISN---------LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 K+A+GA++ +P+ R++N + + + + ++ Q Sbjct: 210 KTAAGAMDRVPFARVTNLSRALESLTENGFVSLGMAGEAEHSLQAVLEQQGWRQAGSPRA 269 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +++G+EG+GLR E + + MPG ++LNVS+A ++ALY Sbjct: 270 LVIVMGSEGEGLRRLVAEHCDHLVKIPMPGGFESLNVSHATSIALYEA 317 >gi|20808116|ref|NP_623287.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] gi|20516703|gb|AAM24891.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] Length = 266 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 97/238 (40%), Gaps = 12/238 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + + F+ G+++V AL++ + + ++ D + F + + + Sbjct: 23 RYEEKLFFVEGLNSVKEALDSDFKVEYVVVG-------EDVEFEFKGDFKLIRIANKLFK 75 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 KI Q + + D ++ + ++ D+V DP N+G I+R+A AF D + Sbjct: 76 KISD-TVTPQKIMAIVRMPVYREEDFIKEEGVYVIADNVQDPGNLGTIIRTADAFGADAV 134 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 T + + +++ G++ HIP I +N K L + + Sbjct: 135 FTINNSVDIYNPKVLRASMGSIFHIPVIATANEVLYKLKGKGVKVFATHLKGEKFVHEVE 194 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A ILG E +G+ + + M G ++LNVS AAA+ LY +Q Sbjct: 195 I--DKGTAFILGNEARGVSS--LDFVDGFIKIPMTGRAESLNVSIAAAIFLYESQRQR 248 >gi|313902051|ref|ZP_07835464.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus DSM 13965] gi|313467660|gb|EFR63161.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus DSM 13965] Length = 286 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 91/265 (34%), Gaps = 10/265 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS---RKIFQLLATKNALAR 80 ++ K+++ ++ RH + + G V+ AL + ++ +A Sbjct: 5 SPHNPRIKRLRQLQER-RHRRRLGATLVEGRRFVAEALAAGRVVRQAVYTAAFASSAAGA 63 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL------SPTLDAVRNSQL 134 + VP + + ++ E +A A + L Sbjct: 64 ALLRDLAAAGCQLAEVPDRLLAEVALTETPQGIVAEVAVDEPGPAGPSWWQGVAAASLPL 123 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ D V DP N+G +LR+A G + ++++GA + R + Sbjct: 124 ALLPDGVQDPGNLGTLLRAAEGLGAAGAVMVPGTVDPFHPRAVRASAGACLRLALARAGD 183 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 +A + + G + + L++G EG G+ P AT + Sbjct: 184 AAEAARAARAAGLAVWVAEAGAATACWDVDWRRPALLVVGNEGAGVSPAVAGQATGRVAI 243 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 + G I +LNV+ A + LY Sbjct: 244 PLAGGIGSLNVAMAGTILLYEAARQ 268 >gi|209515693|ref|ZP_03264557.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. H160] gi|209503929|gb|EEA03921.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. H160] Length = 247 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 117/239 (48%), Gaps = 7/239 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + + K+ A + + + Sbjct: 6 VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLQAAKDAGVRLIAADETRLWGLAR 65 Query: 107 KEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A A L+ LD + S L++VLD V DPHN+GA LR A A + Sbjct: 66 TDRHQGVVARAGDLPLAQNLAELLDGITGSPLILVLDGVTDPHNLGACLRVADAAGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + + +A AK ASGA + +PYI ++NL AL+++ G +G + D++K + Sbjct: 126 IAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGDAEKSVYD 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +AL+LGAEG+G+R T+ET + H+ M G +++LNVS A+ V L+ A Sbjct: 186 TELDGPVALVLGAEGEGMRRLTRETCDVVMHIPMAGTVESLNVSVASGVCLFEAVRQRA 244 >gi|319654849|ref|ZP_08008924.1| TRNA/rRNA methyltransferase [Bacillus sp. 2_A_57_CT2] gi|317393412|gb|EFV74175.1| TRNA/rRNA methyltransferase [Bacillus sp. 2_A_57_CT2] Length = 247 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 116/242 (47%), Gaps = 11/242 (4%) Query: 48 NLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 F+ G + V AL + KIF +++ + V+ VP + ID + Sbjct: 3 QDFIIGKNPVIEALKSERDINKIFIAEGSQSGQMQQVIGLAKSAGVLVQFVPKKKIDGMA 62 Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 E HQG+ + A +D + ++LD + DPHN+G+I+R+A A Sbjct: 63 --EGNHQGVIAQVAAYQYAEIDDLFAAAEKKNEAAFFLLLDEIEDPHNLGSIMRTADAVG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII KR + +A +AK+++GA+E+IP +R++N+ + ++ G G + K+ Sbjct: 121 AHGIIIPKRRAVGLTATVAKASTGAIEYIPVVRVTNMARTIDELKERGVWIAGTDAKGKQ 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 Q + L++G+EGKG+ ++ + +L M G + +LN S AAA+ +Y Sbjct: 181 DFRQMDGTMPLGLVIGSEGKGMGRLIRDKCDFLINLPMAGHVTSLNASVAAALLMYEVYR 240 Query: 279 HF 280 Sbjct: 241 KR 242 >gi|253998852|ref|YP_003050915.1| tRNA/rRNA methyltransferase SpoU [Methylovorus sp. SIP3-4] gi|253985531|gb|ACT50388.1| tRNA/rRNA methyltransferase (SpoU) [Methylovorus sp. SIP3-4] Length = 260 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 98/256 (38%), Gaps = 8/256 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ +K+++ + SR + L G H + + ++A + ++ Sbjct: 8 SRDNPVFKQLKKLAESSRERRRLGQTLLDGPHLLRDYMAVFGTPRQLIIAEGQSTNEVNG 67 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 P V ++ G+ L + +++L+ + D Sbjct: 68 LIQELADIPTLMVTTLMFAELS-PVTTPTGILALVDTPQ---LPLPETLEFVLMLEDIQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G++LRSA A + ++ + + S + GA +P + S+L + Sbjct: 124 PGNLGSMLRSAAAAGVQAVYLSEGCAEAWSPKALRGGQGAQFVLPVVERSDL----LALT 179 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + L ++ +A ++G EG GL K Q A+ H+ M G +++L Sbjct: 180 GNFPGETLATVMQGESLYEQDLRQPVAFLIGNEGAGLSLKLQAAASRKIHIPMQGQVESL 239 Query: 264 NVSNAAAVALYITQNH 279 N + A ++ ++ Sbjct: 240 NAAAATSICVFERLRQ 255 >gi|91216066|ref|ZP_01253034.1| putative tRNA:rRNA methyltransferase [Psychroflexus torquis ATCC 700755] gi|91185583|gb|EAS71958.1| putative tRNA:rRNA methyltransferase [Psychroflexus torquis ATCC 700755] Length = 249 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 112/245 (45%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDK 103 E+ ++G+H++ AL +L + +L L V VP Q K Sbjct: 2 EESHVIFGIHSIVEALRQGKDIEKIILLRDSDNPKLKEIEGLAEQNTIKVSYVPIQKFKK 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 ++ HQG T+ + + ++ L ++LD + D N+GAILR+A Sbjct: 62 Y--EQLNHQGAIAHTSKISYSDFEETVEKVLEIKEKPLFLLLDGITDVRNLGAILRTAEC 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D +I K S + K+++GA +IP ++++L DAL + S G + + ++ + Sbjct: 120 TGVDAVILPKSGSAQVNNETIKTSAGAAFNIPICKVNHLKDALFYLKSSGVEIVAVTEKT 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + N +AL++G EG+G++P + A L M G I++LNVS A V LY Sbjct: 180 NTSVYELELNKPLALLMGGEGEGIQPSILKMADVKGKLPMLGSIESLNVSVACGVILYEC 239 Query: 277 QNHFA 281 Sbjct: 240 LRQQN 244 >gi|15841100|ref|NP_336137.1| rRNA methylase, putative [Mycobacterium tuberculosis CDC1551] gi|31792831|ref|NP_855324.1| 23S rRNA methyltransferase TsnR [Mycobacterium bovis AF2122/97] gi|121637552|ref|YP_977775.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148822852|ref|YP_001287606.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis F11] gi|215411290|ref|ZP_03420098.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis 94_M4241A] gi|215426963|ref|ZP_03424882.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92] gi|218753350|ref|ZP_03532146.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM 1503] gi|219557563|ref|ZP_03536639.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17] gi|224990027|ref|YP_002644714.1| putative 23S rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253799316|ref|YP_003032317.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN 1435] gi|254231845|ref|ZP_04925172.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis C] gi|254364493|ref|ZP_04980539.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis str. Haarlem] gi|260186592|ref|ZP_05764066.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A] gi|260200707|ref|ZP_05768198.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46] gi|260204913|ref|ZP_05772404.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85] gi|289443098|ref|ZP_06432842.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46] gi|289447254|ref|ZP_06436998.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A] gi|289554581|ref|ZP_06443791.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN 605] gi|289569691|ref|ZP_06449918.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17] gi|289574313|ref|ZP_06454540.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85] gi|289750192|ref|ZP_06509570.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92] gi|289761795|ref|ZP_06521173.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM 1503] gi|294996594|ref|ZP_06802285.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis 210] gi|297634197|ref|ZP_06951977.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN 4207] gi|297731184|ref|ZP_06960302.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN R506] gi|298525142|ref|ZP_07012551.1| TsnR protein [Mycobacterium tuberculosis 94_M4241A] gi|306779644|ref|ZP_07417981.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu002] gi|306784375|ref|ZP_07422697.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu003] gi|306788744|ref|ZP_07427066.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu004] gi|306793080|ref|ZP_07431382.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu005] gi|306797461|ref|ZP_07435763.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu006] gi|306803340|ref|ZP_07440008.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu008] gi|306807922|ref|ZP_07444590.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu007] gi|306967739|ref|ZP_07480400.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu009] gi|313658516|ref|ZP_07815396.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN V2475] gi|13881315|gb|AAK45951.1| rRNA methylase, putative [Mycobacterium tuberculosis CDC1551] gi|31618421|emb|CAD96339.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium bovis AF2122/97] gi|121493199|emb|CAL71670.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600904|gb|EAY59914.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis C] gi|134150007|gb|EBA42052.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis str. Haarlem] gi|148721379|gb|ABR06004.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis F11] gi|224773140|dbj|BAH25946.1| putative 23S rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253320819|gb|ACT25422.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN 1435] gi|289416017|gb|EFD13257.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46] gi|289420212|gb|EFD17413.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A] gi|289439213|gb|EFD21706.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN 605] gi|289538744|gb|EFD43322.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85] gi|289543445|gb|EFD47093.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17] gi|289690779|gb|EFD58208.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92] gi|289709301|gb|EFD73317.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM 1503] gi|298494936|gb|EFI30230.1| TsnR protein [Mycobacterium tuberculosis 94_M4241A] gi|308327413|gb|EFP16264.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu002] gi|308330923|gb|EFP19774.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu003] gi|308334693|gb|EFP23544.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu004] gi|308338535|gb|EFP27386.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu005] gi|308342205|gb|EFP31056.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu006] gi|308345731|gb|EFP34582.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu007] gi|308350031|gb|EFP38882.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu008] gi|308354668|gb|EFP43519.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu009] gi|323719905|gb|EGB29018.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CDC1551A] gi|326903259|gb|EGE50192.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis W-148] gi|328459067|gb|AEB04490.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN 4207] Length = 260 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 101/269 (37%), Gaps = 16/269 (5%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 + + A + HR + G + V+AAL + ++ T+ Sbjct: 5 RSARVATAVKLHRHV-----------GRRRAGRFLAEGPNLVAAALARG--LVREVFVTE 51 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 A R + H V V + + +A+ P + QL+ Sbjct: 52 VAARRHELLLA-AHEASVHLVTERAAKALSDTVTPAGLVAVCDLPATRLEDVLAGSPQLI 110 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 V + +P N G ++R A A +I R + ++++G++ IP + ++ Sbjct: 111 AVTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPYNGKCLRASTGSIFAIPVVVAPDV 170 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAH 253 A+ + + G Q + + D + L+ + A + G E GL + A H Sbjct: 171 GAAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAHGLSAEIAALADHRVH 230 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G ++LNV+ AAA+ LY + + Sbjct: 231 IPMSGGAESLNVAAAAAICLYESARALGR 259 >gi|293610125|ref|ZP_06692426.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827357|gb|EFF85721.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325124297|gb|ADY83820.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 249 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 107/242 (44%), Gaps = 12/242 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 YGVH+V + L ++ L K RL L V+ +++K+ G Sbjct: 8 YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGLP 67 Query: 109 AVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ P + LL+ LD V DPHN+GA +R+A A + Sbjct: 68 -FHQGVVAAVRPHPTLNEKDLDQILAETPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPL 220 I + S S + K A+G E + +I+++NL K + + +S P+ Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHTRVIGTMLDESAMPI 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + + +++GAE GLRP TQ ++ M G +++LNVS A +ALY Sbjct: 187 QKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246 Query: 281 AK 282 ++ Sbjct: 247 SE 248 >gi|309792699|ref|ZP_07687150.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6] gi|308225248|gb|EFO79025.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6] Length = 267 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 97/256 (37%), Gaps = 7/256 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DW 83 + ++++ Q+ + + + F+ GV V A+ + L+ L D Sbjct: 8 NPSIRQIRVLRQR-KERERSGHFFVEGVRLVGEAVALG--MVETLVVAPELLTSPFGQDL 64 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 A + V + I KE A+ ++ + N+ + L D Sbjct: 65 VAQQAGHTRMIEVSAEVFASISQKEGPQGLAAVARQRWVNLADVRLTNAPGWVALLEPAD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ILR+A A G++ + +++ GA+ + + + Sbjct: 125 PGNLGTILRTADAVGASGVMLLDHATDPYDPAALRASMGAIF-ALQVVRATFAEFAAWKR 183 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + G +G + + + + + L++G+E +GL P Q M HL M G +L Sbjct: 184 AQGIFLVGAADKAPTHYQDLVYPQPLVLLMGSERQGLSPDQQALCDQMVHLPMCGRSDSL 243 Query: 264 NVSNAAAVALYITQNH 279 N++ A V LY + Sbjct: 244 NLAVATGVLLYELLSQ 259 >gi|317126031|ref|YP_004100143.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum DSM 43043] gi|315590119|gb|ADU49416.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum DSM 43043] Length = 320 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 66/258 (25%), Positives = 109/258 (42%), Gaps = 12/258 (4%) Query: 35 SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHP 90 S + ++ + + G ++V AL + + + + Sbjct: 65 SAPSRGPRRTKGSSEIVAGRNSVVEALRADI-PVSTMFVATRIDSDDRVKEALKLATERG 123 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPH 145 P+ P +D++ AVHQGLAL+ P L++ LD + DP Sbjct: 124 LPILEAPRGELDRLTD-GAVHQGLALQVPPYEYADPRDLVDPEQPGVPLIVALDGITDPR 182 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI+RS AF G++ +R S +A K+++GA IP + NLT AL+ Sbjct: 183 NLGAIVRSVAAFGGHGVVVPERRSVGMTASAWKTSAGAAARIPVAKAGNLTRALEDFKRA 242 Query: 206 GFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 GF +GL D L + + ++ G+EGKGL +ET + + M +++LN Sbjct: 243 GFFVLGLDMDGDVQLPDLTLAAEPLVVVTGSEGKGLSRLVRETCDQIVSIPMSSAVESLN 302 Query: 265 VSNAAAVALYITQNHFAK 282 A VALY + Sbjct: 303 AGLATGVALYEIARQRRR 320 >gi|227834034|ref|YP_002835741.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] gi|262183480|ref|ZP_06042901.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] gi|227455050|gb|ACP33803.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] Length = 316 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 63/288 (21%), Positives = 121/288 (42%), Gaps = 26/288 (9%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ K H AKL R + S + + G + V L+ Sbjct: 38 TPKAEDRVYHAK--HKAKLERE----------RRNSGRHDKETAEMVVGRNPVIECLHA- 84 Query: 65 SRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + P+ V +D++ G +HQG+ L+ P Sbjct: 85 KVPATSLYIVQGTRNDARLSEAVAMCNTRNIPILEVQRHEMDRMTG-NGMHQGIGLQIPP 143 Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + + + ++LD++ DP N+GA++RS AF G+I +R S S + Sbjct: 144 YKYADVHDLMDRARDAQEPGMFVILDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVT 203 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALI 232 AV ++++G +P R++N+T +Q G+Q +GL + + D + ++ Sbjct: 204 AVAWRTSAGTAARLPVARVTNVTRTVQDFQKAGYQVVGLDAGGEHTLDTYNGGTDPVVIV 263 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +G+EGKG+ +E ++ + M +++LN S AA L Sbjct: 264 IGSEGKGISRLVRENCDAIMSIPMTDWVESLNASVAAGAVLSEFARQR 311 >gi|253733629|ref|ZP_04867794.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|253728329|gb|EES97058.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] Length = 246 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ +I +K R + + GVH + A Sbjct: 1 MEQITSAQNNRIKQANKL-------------------KKKRERDKTGLALIEGVHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I QL A + A + + V + + + + G QG Sbjct: 42 YQSGI-VITQLFAIEPAR---LDQQIIAYAQEVFEINMKVAESLSG-TVTPQGFFAIIEK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + +Q ++++D V DP N+G ++R+A A D +I K + + +++ Sbjct: 97 PHYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P + T Q + + K+ + AL+LG EG+G+ Sbjct: 153 QGSVFHLPVMIQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSF----ALLLGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P+ T + + G ++LNV+ A ++ LY + Sbjct: 209 NPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245 >gi|227873419|ref|ZP_03991674.1| tRNA/rRNA methyltransferase [Oribacterium sinus F0268] gi|227840724|gb|EEJ51099.1| tRNA/rRNA methyltransferase [Oribacterium sinus F0268] Length = 249 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 97/247 (39%), Gaps = 14/247 (5%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQT 100 + + G + V A I +L + V Sbjct: 2 REEGYTLI-GRNPVLEAFRAGKT-IDRLFIQDGLKDGPILSILREAKKQDLVIDFVKKSR 59 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRS 153 +D++ E HQG+ + L+ + +LD + DPHN+GA++R+ Sbjct: 60 LDEMSSGE-THQGVIAYLSAYEYAPLEELLQVAKDKGEAPFFFLLDGIEDPHNLGAMIRT 118 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A G+I KR + +A +A++++GAL + +++NL ++++ G + Sbjct: 119 ANLAGAHGVIIPKRRAVGLTATVARTSAGALNYTKVCKVTNLVQTMEELKKEGMWFVCG- 177 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + I L+LG EG+G+ +ET A + M G + +LN S A V Sbjct: 178 DMRGESMYKLNLTGSIGLVLGNEGEGVSRLVKETCDMQASIPMKGELDSLNASVACGVLA 237 Query: 274 YITQNHF 280 Y Sbjct: 238 YEIVRQR 244 >gi|257886892|ref|ZP_05666545.1| RNA methyltransferase [Enterococcus faecium 1,141,733] gi|257890478|ref|ZP_05670131.1| RNA methyltransferase [Enterococcus faecium 1,231,410] gi|257893082|ref|ZP_05672735.1| RNA methyltransferase [Enterococcus faecium 1,231,408] gi|260558938|ref|ZP_05831125.1| RNA methyltransferase [Enterococcus faecium C68] gi|293559777|ref|ZP_06676297.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162] gi|293568626|ref|ZP_06679941.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071] gi|314950192|ref|ZP_07853477.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0082] gi|257822946|gb|EEV49878.1| RNA methyltransferase [Enterococcus faecium 1,141,733] gi|257826838|gb|EEV53464.1| RNA methyltransferase [Enterococcus faecium 1,231,410] gi|257829461|gb|EEV56068.1| RNA methyltransferase [Enterococcus faecium 1,231,408] gi|260075046|gb|EEW63361.1| RNA methyltransferase [Enterococcus faecium C68] gi|291588586|gb|EFF20419.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071] gi|291606260|gb|EFF35674.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162] gi|313643502|gb|EFS08082.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0082] Length = 254 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 57/276 (20%), Positives = 102/276 (36%), Gaps = 24/276 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I LK H K R + E L G H + A Sbjct: 1 MKEIQSAKNPRIKELKKLHKKKYR-------------------EEKEEYLLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ + V + +D + LA+ Sbjct: 42 -ASSDAEIKELFVTQRGMKEWGDWLAANKEISTFLVSDEVMDAVSDLPTPQGILAVMALT 100 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 101 AEGTPDFSGGW----LLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P ++ ++ L++ K+D A+I+G EG+G+ Sbjct: 157 QGSNYHLPVLQKDLTEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQGV 216 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + ++ M G ++LNV AA + LY Sbjct: 217 SQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252 >gi|317488758|ref|ZP_07947292.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA] gi|316912128|gb|EFV33703.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA] Length = 248 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 59/244 (24%), Positives = 101/244 (41%), Gaps = 15/244 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 F+ G V AL L+ ++ L V+ VP + +D Sbjct: 4 FIEGKRPVIEALRTGVPIKSILMADNVQRDGLIEDILRKAKRAGATVEMVPRKVLDGKSD 63 Query: 107 KEAVHQGLALETAPLLS-----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 HQG+ + A + + L+++LDH+ D N+GA+ RSA Sbjct: 64 -RGSHQGVMAKAASFPYVGIGDVIDAAGKSAEQHDGRALVIILDHITDAGNLGAVSRSAE 122 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ + S A KS++GA+ H+P ++SNL + ++ GF G + Sbjct: 123 AVGACGIVIPNKRSAHVEASTYKSSAGAIAHVPVAQVSNLVQTMSRLKEEGFWIAGATEH 182 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + + KIAL++G E +G+ E + L + G + +LNV+ AA +Y Sbjct: 183 ASDLIWKANLKGKIALVMGNEQEGISRLVMEHCDFLVKLPIEGEVASLNVAQAATACMYE 242 Query: 276 TQNH 279 Sbjct: 243 WLRQ 246 >gi|270292099|ref|ZP_06198314.1| SpoU rRNA Methylase family protein [Streptococcus sp. M143] gi|270279627|gb|EFA25469.1| SpoU rRNA Methylase family protein [Streptococcus sp. M143] Length = 252 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 55/274 (20%), Positives = 104/274 (37%), Gaps = 31/274 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 7 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 45 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A ++ +L A P V + + + + QG+ Sbjct: 46 VQAGVT-IEKIFALESYRDQL---AAFPQTV---WVSEEILRDLADSQ-TPQGIVAIVQK 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G ++R+A A G+I + + + S +S Sbjct: 98 EEVGLPDLRQGKFLFL--EDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+ T S S K + + L++G EG+G+ Sbjct: 156 QGSHFHLPIYRMPVATFVEGAKKSDLPILATTLSRESKDYRELSPLEDFVLVMGNEGQGI 215 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E+A + H+ M G ++LNV+ AA + ++ Sbjct: 216 SSVMAESADQLVHISMKGRAESLNVAVAAGILMF 249 >gi|15924127|ref|NP_371661.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50] gi|15926721|ref|NP_374254.1| hypothetical protein SA0984 [Staphylococcus aureus subsp. aureus N315] gi|21282749|ref|NP_645837.1| hypothetical protein MW1020 [Staphylococcus aureus subsp. aureus MW2] gi|49485975|ref|YP_043196.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651746|ref|YP_186010.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL] gi|87160549|ref|YP_493734.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194838|ref|YP_499636.1| hypothetical protein SAOUHSC_01091 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267629|ref|YP_001246572.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp. aureus JH9] gi|150393684|ref|YP_001316359.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp. aureus JH1] gi|151221260|ref|YP_001332082.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156979459|ref|YP_001441718.1| hypothetical protein SAHV_1128 [Staphylococcus aureus subsp. aureus Mu3] gi|161509311|ref|YP_001574970.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140465|ref|ZP_03564958.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253317080|ref|ZP_04840293.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005923|ref|ZP_05144524.2| RNA methyltransferase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795133|ref|ZP_05644112.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9781] gi|258407159|ref|ZP_05680308.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9763] gi|258421750|ref|ZP_05684671.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9719] gi|258432906|ref|ZP_05688595.1| TrmH family rRNA methyltransferase [Staphylococcus aureus A9299] gi|258443396|ref|ZP_05691739.1| rRNA methylase [Staphylococcus aureus A8115] gi|258446069|ref|ZP_05694231.1| rRNA methylase [Staphylococcus aureus A6300] gi|258449818|ref|ZP_05697916.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A6224] gi|258451834|ref|ZP_05699855.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5948] gi|258454917|ref|ZP_05702880.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5937] gi|262048719|ref|ZP_06021601.1| hypothetical protein SAD30_1549 [Staphylococcus aureus D30] gi|262051661|ref|ZP_06023880.1| hypothetical protein SA930_1488 [Staphylococcus aureus 930918-3] gi|269202749|ref|YP_003282018.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98] gi|282894164|ref|ZP_06302395.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8117] gi|282919914|ref|ZP_06327643.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9765] gi|282928659|ref|ZP_06336256.1| TrmH family RNA methyltransferase [Staphylococcus aureus A10102] gi|284024062|ref|ZP_06378460.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132] gi|294848127|ref|ZP_06788874.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9754] gi|295405941|ref|ZP_06815750.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8819] gi|296275624|ref|ZP_06858131.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1] gi|297208226|ref|ZP_06924656.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246501|ref|ZP_06930339.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8796] gi|300912303|ref|ZP_07129746.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|304381306|ref|ZP_07363959.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13700937|dbj|BAB42233.1| SA0984 [Staphylococcus aureus subsp. aureus N315] gi|14246907|dbj|BAB57299.1| similar to rRNA methylase [Staphylococcus aureus subsp. aureus Mu50] gi|21204187|dbj|BAB94885.1| MW1020 [Staphylococcus aureus subsp. aureus MW2] gi|49244418|emb|CAG42846.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57285932|gb|AAW38026.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus COL] gi|87126523|gb|ABD21037.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202396|gb|ABD30206.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740698|gb|ABQ48996.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp. aureus JH9] gi|149946136|gb|ABR52072.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp. aureus JH1] gi|150374060|dbj|BAF67320.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156721594|dbj|BAF78011.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368120|gb|ABX29091.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257789105|gb|EEV27445.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9781] gi|257841314|gb|EEV65759.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9763] gi|257842083|gb|EEV66511.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9719] gi|257849346|gb|EEV73323.1| TrmH family rRNA methyltransferase [Staphylococcus aureus A9299] gi|257851486|gb|EEV75425.1| rRNA methylase [Staphylococcus aureus A8115] gi|257855127|gb|EEV78068.1| rRNA methylase [Staphylococcus aureus A6300] gi|257856738|gb|EEV79641.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A6224] gi|257860442|gb|EEV83269.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5948] gi|257862797|gb|EEV85562.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5937] gi|259160396|gb|EEW45421.1| hypothetical protein SA930_1488 [Staphylococcus aureus 930918-3] gi|259163175|gb|EEW47735.1| hypothetical protein SAD30_1549 [Staphylococcus aureus D30] gi|262075039|gb|ACY11012.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98] gi|269940631|emb|CBI49010.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus TW20] gi|282589698|gb|EFB94784.1| TrmH family RNA methyltransferase [Staphylococcus aureus A10102] gi|282594630|gb|EFB99614.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9765] gi|282763650|gb|EFC03779.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8117] gi|285816817|gb|ADC37304.1| SpoU rRNA Methylase family protein [Staphylococcus aureus 04-02981] gi|294824927|gb|EFG41349.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9754] gi|294969376|gb|EFG45396.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8819] gi|296886965|gb|EFH25868.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176607|gb|EFH35870.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8796] gi|300886549|gb|EFK81751.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|302750960|gb|ADL65137.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340289|gb|EFM06230.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829530|emb|CBX34372.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128534|gb|EFT84539.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus CGS03] gi|315196860|gb|EFU27203.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp. aureus CGS01] gi|320141048|gb|EFW32895.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus aureus subsp. aureus MRSA131] gi|320143105|gb|EFW34895.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus aureus subsp. aureus MRSA177] gi|329313805|gb|AEB88218.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp. aureus T0131] gi|329725190|gb|EGG61679.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus 21172] gi|329728880|gb|EGG65301.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus 21193] gi|329730768|gb|EGG67147.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus 21189] Length = 246 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ +I +K R + + GVH + A Sbjct: 1 MEQITSAQNNRIKQANKL-------------------KKKRERDKTGLALIEGVHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I QL A + A + + V + + + + G QG Sbjct: 42 YQSGI-VITQLFAIEPAR---LDQQIIAYAQEVFEINMKVAESLSG-TVTPQGFFAIIEK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + +Q ++++D V DP N+G ++R+A A D +I K + + +++ Sbjct: 97 PHYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P + T Q + + K+ + AL+LG EG+G+ Sbjct: 153 QGSVFHLPVMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSF----ALLLGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P+ T + + G ++LNV+ A ++ LY + Sbjct: 209 NPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245 >gi|325833012|ref|ZP_08165639.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella sp. HGA1] gi|325485729|gb|EGC88194.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella sp. HGA1] Length = 248 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 15/244 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 F+ G V AL L+ ++ L V+ VP + +D Sbjct: 4 FIEGKRPVIEALRTGVPIKSILMADNVQRDGLIEDILRKAKRAGATVEMVPRKVLDGKSD 63 Query: 107 KEAVHQGLALETAPLLS-----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 HQG+ + AP + + L+++LDH+ D N+GA+ RSA Sbjct: 64 -RGSHQGVMAKAAPFPYVGIGDVIDAAGKSAEQHDGRALVIILDHITDAGNLGAVSRSAE 122 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ + S A KS++GA+ H+P ++SNL + ++ GF G + Sbjct: 123 AVGACGIVIPNKRSAHVEASTYKSSAGAIAHVPVAQVSNLVQTMSRLKEEGFWIAGATEH 182 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +K + + KIAL++G E +G+ E + L + G + +LNV+ AA +Y Sbjct: 183 AKDLIWKSNLKGKIALVMGNEQEGISRLVMEHCDFLVKLPIEGEVASLNVAQAATACMYE 242 Query: 276 TQNH 279 Sbjct: 243 WLRQ 246 >gi|182412678|ref|YP_001817744.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] gi|177839892|gb|ACB74144.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] Length = 296 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 49/306 (16%), Positives = 94/306 (30%), Gaps = 48/306 (15%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 EKI SL+ + K++ + R + + G + AL + Sbjct: 4 EKISSLQ----------NPRVKQLVKLRDR-RPRDEAGVFLIEGFREIRRALE-KRVPLR 51 Query: 70 QLLATKNALARLDW----DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 +L + + + K+ +E GL Sbjct: 52 ELYYAPEWFLGENEPALIAQAEAAGAQLFELTKSAFAKVAYRER-PDGLLAVAPQWKRTL 110 Query: 126 LDAVR------------------------------NSQLLMVLDHVNDPHNIGAILRSAV 155 D + + ++V++ + P N+G ILRSA Sbjct: 111 QDLDKIVAGSGGPGRPGSTTPATTSAVGAGAPDLQRAPFILVVEAIEKPGNLGTILRSAD 170 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A CD +I AS + + ++ L + + G +TI + Sbjct: 171 AAGCDAVIVC-DPVTDIFNPNVVRASTGVLFSVPLVVAESAPVLAWLRAQGVRTIATTPA 229 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++K +A+++G+E GL + + M G +LNV+ A + L+ Sbjct: 230 AEKLYTDADLRGPLAIVMGSEQYGLSEFWLKNCDLPVRIPMAGQADSLNVAMATIITLFE 289 Query: 276 TQNHFA 281 A Sbjct: 290 AVRQRA 295 >gi|74316633|ref|YP_314373.1| tRNA/rRNA methyltransferase [Thiobacillus denitrificans ATCC 25259] gi|74056128|gb|AAZ96568.1| tRNA/rRNA methyltransferase [Thiobacillus denitrificans ATCC 25259] Length = 260 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 104/263 (39%), Gaps = 8/263 (3%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 + A R++ +K+++ + SR + L G H ++A L L+ ++ Sbjct: 2 TETAIRSRDNPIFKRLKKLAESSRARREARMTLLDGEHLLAAYLAAGGTP-HTLVRAESC 60 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137 A VP ++ LA +D L++V Sbjct: 61 DAARLAAVADCRQAKTVVVPDALFAELAPVATPTGVLAEAAWLTPQAPVDLA----LVVV 116 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L+ + DP N+GA+LR+A A + +K + S + GA +P ++ Sbjct: 117 LEDIQDPGNLGAMLRTAAAAGATLAVLSKGCHDAWSPKALRGGQGAQFVLPMQLAADP-- 174 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 + + ++ L+ ++ L AL++G EG GL T AT+ A + MP Sbjct: 175 -GSWLRDFSGTSVALAPEAAHDLYTLDYTGPTALVVGNEGAGLSAATLAAATTRARIPMP 233 Query: 258 GIIKALNVSNAAAVALYITQNHF 280 G +++LN S A AVA++ Sbjct: 234 GRVESLNASAALAVAVFEALRQR 256 >gi|313901164|ref|ZP_07834652.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2] gi|312954122|gb|EFR35802.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2] Length = 243 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 96/252 (38%), Gaps = 16/252 (6%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K+ +K ++ + + + G H + A + +L Sbjct: 8 NAKVKQWAKLKEK-KYREKDQRFLVEGEHLIEEAARAG--LVEAVLVEIGKAHTFVEY-- 62 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 PV V + K+ + +V + + + ++VLD V DP N Sbjct: 63 -----PVYEVTKDILRKL--ESSVSGTWIMAVCRMPQY--HDAEFGKRVIVLDDVQDPGN 113 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G I+R+AV+F D ++ + + + +S GAL HIP IR + Sbjct: 114 VGTIIRTAVSFGYDAVLLSAHSCDVYNEKVIRSTQGALFHIPVIRGDVQAMLMSLKQKGN 173 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 ++ E + D AL+ G EGKG+ + A + + M ++LNV+ Sbjct: 174 RILATSLHNASALREIAV-PDAFALVFGNEGKGVSEEVLRLADTHVFIEMH-TFESLNVA 231 Query: 267 NAAAVALYITQN 278 AA + +Y + Sbjct: 232 VAAGICMYAFKK 243 >gi|254516842|ref|ZP_05128900.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium NOR5-3] gi|219674347|gb|EED30715.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium NOR5-3] Length = 256 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 106/246 (43%), Gaps = 13/246 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + +G+H V L + + L K + + PV +P +D++ Sbjct: 2 SEYAFGLHAVEELLRRQPKSVSGLWVQKGRDDGRMQALLALAASTDTPVSRLPRVKLDEL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDA----------VRNSQLLMVLDHVNDPHNIGAILRSA 154 V L L L++VLD V DPHN+GA LRSA Sbjct: 62 VSGRHQGVVAQLGENTEEQADLRWSEEQLARAVTYNPRALVLVLDGVTDPHNLGACLRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A ++ K + +AV+ K A GA E +P +R++NL +L + + G G + Sbjct: 122 DAAGVTAVVVPKDNAADITAVVRKVACGATETVPLVRVTNLARSLDALKAAGVWIYGTAG 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + L +AL++GAEG G+R T+E + L M G + +LNVS A V L+ Sbjct: 182 EAGESLYSTELKGAVALVMGAEGAGMRRLTRERCDFLLSLPMAGSVTSLNVSVATGVCLF 241 Query: 275 ITQNHF 280 + Sbjct: 242 EIRRQR 247 >gi|115525681|ref|YP_782592.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53] gi|115519628|gb|ABJ07612.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas palustris BisA53] Length = 276 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 115/236 (48%), Positives = 151/236 (63%), Gaps = 1/236 (0%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + R LYG HTV AAL NP R+I L T+NA RL D N+P + V P Sbjct: 30 RDRGERPEGPAILYGWHTVVAALANPQRRIRSLFLTENAARRLS-DENIPTRVQPEIVRP 88 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 ID+ +G +AVHQGL E PL SP +D++ +++VLD + DPHN+GAILRSA AF+ Sbjct: 89 SAIDQRLGPDAVHQGLLAEVDPLPSPDIDSLPQEGIVLVLDQITDPHNVGAILRSAAAFA 148 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 I+ T R+SP + VLAKSASGALE +P + + NL AL +++ GF TIGL S+ Sbjct: 149 VKAIVITARHSPEATGVLAKSASGALELVPLVSVGNLARALTELNDRGFLTIGLDSEGDD 208 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L +AL+LGAEGKGLR T++T ++A L +PG IK+LNVSNAAA+ALY Sbjct: 209 DLASIELTQPLALVLGAEGKGLRQLTRQTCGALARLDLPGDIKSLNVSNAAALALY 264 >gi|254495332|ref|ZP_05108256.1| SpoU rRNA methylase [Polaribacter sp. MED152] gi|85819686|gb|EAQ40843.1| SpoU rRNA methylase [Polaribacter sp. MED152] Length = 248 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 111/240 (46%), Gaps = 10/240 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++G+ + A+ + S KI+ + +L TVP + ++++ K Sbjct: 7 IFGLRAIIEAIESGSTINKIYLQKGLRGSLYYELDKLIKDSKIATSTVPVEKLNRLS-KN 65 Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + HQG + +P+ L+ ++LD ++D N GAI+R+A +G Sbjct: 66 SNHQGAVAQISPIDFYDLETLLDDTLEAEKVPFFLILDQLSDVRNFGAIIRTAECTGVNG 125 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II K S +A K+++GA +P ++ ++ DAL + + +T+ + + + Sbjct: 126 IIIQKNGSAPVNAETIKTSAGAAFKMPICKVDHIKDALFILQASNIKTVAATEKTDSSIY 185 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 N IA+I+G+E +G+ P + A L + G I++LNVS A V LY T + Sbjct: 186 DVNFNQPIAIIMGSEHRGVNPSVLKMVDYKAKLPLSGNIESLNVSVACGVFLYETVRQRS 245 >gi|326937885|gb|AEA13781.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar chinensis CT-43] Length = 247 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 115/243 (47%), Gaps = 13/243 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ G + V AL + R I ++ + A ++ + ++ P + +D++ Sbjct: 3 SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKVILQHAPKKKLDQL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E HQG+ + A L+ ++LD + DPHN+G+I+R+A A Sbjct: 62 V--EGNHQGVIAQVAAYQYAELEELFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G G + K Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 I L++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 180 TDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239 Query: 278 NHF 280 Sbjct: 240 RKR 242 >gi|313200946|ref|YP_004039604.1| tRNA/rRNA methyltransferase SpoU [Methylovorus sp. MP688] gi|312440262|gb|ADQ84368.1| tRNA/rRNA methyltransferase (SpoU) [Methylovorus sp. MP688] Length = 260 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 97/256 (37%), Gaps = 8/256 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ +K+++ + SR + L G H + + ++A + ++ Sbjct: 8 SRDNPVFKQLKKLAESSRERRRLGQTLLDGPHLLRDYMAVFGTPRQLIIAEGQSTNEVNG 67 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 P V ++ G+ L + +++L+ + D Sbjct: 68 LIQELADIPTLMVTTLMFAELS-PVTTPTGILALVDTPQ---LPLPETLEFVLMLEDIQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G++LRSA A + ++ + + S + GA +P + S+L + Sbjct: 124 PGNLGSMLRSAAAAGVQVVYLSEGCAEAWSPKALRGGQGAQFVLPVVERSDL----LALA 179 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + L + +A ++G EG GL K Q A+ H+ M G +++L Sbjct: 180 GNFPGETLATVMQGESLYAQNLRQPVAFLIGNEGAGLSLKLQAAASRKIHIPMQGQVESL 239 Query: 264 NVSNAAAVALYITQNH 279 N + A ++ ++ Sbjct: 240 NAAAATSICVFERLRQ 255 >gi|302332745|gb|ADL22938.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus JKD6159] Length = 246 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ +I +K R + + GVH + A Sbjct: 1 MEQITSAQNNRIKQANKL-------------------KKKRERDKTGLALIEGVHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I QL A + A + + V + + + + G QG Sbjct: 42 YQSGI-VITQLFAIEPAR---LDQQIIAYAQEVFEINMKVAESLSG-TVTPQGFFAIIEK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + +Q ++++D V DP N+G ++R+A A D +I K + + +++ Sbjct: 97 PQYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P + T Q + + K+ + AL+LG EG+G+ Sbjct: 153 QGSVFHLPVMTQDLDTFITQFNGPVYGTALENAVTYKEVTSSDSF----ALLLGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P+ T + + G ++LNV+ A ++ LY + Sbjct: 209 NPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245 >gi|227541536|ref|ZP_03971585.1| TrmH family rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227182692|gb|EEI63664.1| TrmH family rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] Length = 436 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 96/257 (37%), Gaps = 3/257 (1%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 ++S + + + G ++V AA+ + L + A A Sbjct: 109 PRVVNAAKL-KRSAVRKKEKRFLVEGENSVEAAVATGAATDIFLTKSAAARFTDIVAAAK 167 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V + + + A+ L S +L+ V N+P N Sbjct: 168 AMGMYVHFIDEKAAKSLQDTVTSTGIFAVCREVLWSARDVLNGRPKLVSVPVETNEPGNA 227 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ++R A A D ++ +S A+S++G+L HIP R N+ + + G Sbjct: 228 GTLIRVADAMGADCVLFAGDTVDPQSGKAARSSAGSLFHIPVARERNIMKVVSMLRERGL 287 Query: 208 QTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 ++D + L + A + G E GL + Q A + + G ++LN+ Sbjct: 288 AIAATAADGEVDLTDAEDLLSQPTAWLFGNEAHGLPEELQAQADYRVRIPIRGRAESLNL 347 Query: 266 SNAAAVALYITQNHFAK 282 + AA++ L+ + + AK Sbjct: 348 ATAASICLFESSKYQAK 364 >gi|182678319|ref|YP_001832465.1| RNA methyltransferase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634202|gb|ACB94976.1| RNA methyltransferase, TrmH family, group 3 [Beijerinckia indica subsp. indica ATCC 9039] Length = 293 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 95/291 (32%), Positives = 143/291 (49%), Gaps = 22/291 (7%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ--------------- 45 M+ + K + + K + + H + Sbjct: 1 MSRMDSS---KTHQSRGPTAKRSETKPPRSKPWEGQGESRPHRPKSAPASQEKNPSPFRQ 57 Query: 46 --PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 P+ + L+G H V AL + R L AT+ A +L D + V + + + Sbjct: 58 SSPDVILLHGFHAVREALRSDQRTCLALYATEAAAEKLAPD-SKAAGLAPHIVTAEDLSR 116 Query: 104 IVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +G + VHQG+ LE PL + + S +++VLD + DPHN+GAI+R+A AF D I Sbjct: 117 RLGSQTVHQGVLLEARPLEPLDITEIPTRSGVVLVLDQITDPHNVGAIVRTAAAFDVDAI 176 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 +TT+R++P+ VLAK+ASG LEH+ + + NL AL+ + + +GL S ++ Q Sbjct: 177 VTTERHAPALGGVLAKAASGGLEHVQIVPVVNLARALETLGRLNYLRVGLDSAAEADFTQ 236 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 IAL+LG EG GLR T+E +A L MPG IK+LNVSNA AV L Sbjct: 237 LPLQRPIALVLGGEGTGLRRLTREKCDFLARLDMPGKIKSLNVSNACAVVL 287 >gi|282916386|ref|ZP_06324148.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus subsp. aureus D139] gi|283770197|ref|ZP_06343089.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus subsp. aureus H19] gi|282319826|gb|EFB50174.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus subsp. aureus D139] gi|283460344|gb|EFC07434.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus subsp. aureus H19] Length = 246 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 99/277 (35%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ +I +K R + + GVH + A Sbjct: 1 MEQITSAQNNRIKQANKL-------------------KKKRERDKTGLALIEGVHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I L V + + + + G QG Sbjct: 42 YQSG--IIITQLFAIEPARLDQQIIAYAQ--EVFEINMKVAESLSG-TVTPQGFFAIIEK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + +Q ++++D V DP N+G ++R+A A D +I K + + +++ Sbjct: 97 PQYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P + T Q + + K+ + AL+LG EG+G+ Sbjct: 153 QGSVFHLPVMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSF----ALLLGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P+ T + + G ++LNV+ A ++ LY + Sbjct: 209 NPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245 >gi|309778073|ref|ZP_07673012.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 3_1_53] gi|308914167|gb|EFP59968.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 3_1_53] Length = 244 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 49/253 (19%), Positives = 100/253 (39%), Gaps = 16/253 (6%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K+ + +K +H + + + G H + A + +L Sbjct: 8 NAKVKQWAKYKEK-KHREKDQKFLVEGEHLIEEAARAG--LVEAILVEAGRGHDFLQY-- 62 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 PV V P+ + K+ + ++ + + + ++VLD V DP N Sbjct: 63 -----PVYEVTPEILKKL--QSSISGTWIMAVCRMPQYN--TADYGERVIVLDDVQDPGN 113 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G I+RSA++F D ++ + + + +S GAL H+P IR + + Sbjct: 114 VGTIIRSALSFGYDAVLLSSHSCDIYNEKVIRSTQGALFHVPVIRGEVVDMLQELKRKGI 173 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 ++ E +++ AL+ G EG G+ A + ++ M ++LNV+ Sbjct: 174 RILATSLRNATPLHEIA-ASERFALVFGNEGSGVSEDVLYLADTHVYIEM-DTFESLNVA 231 Query: 267 NAAAVALYITQNH 279 AA + +Y + Sbjct: 232 VAAGICMYTLKRR 244 >gi|209884778|ref|YP_002288635.1| RNA methyltransferase, TrmH family, group 3 [Oligotropha carboxidovorans OM5] gi|209872974|gb|ACI92770.1| RNA methyltransferase, TrmH family, group 3 [Oligotropha carboxidovorans OM5] Length = 274 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 116/261 (44%), Positives = 158/261 (60%), Gaps = 4/261 (1%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN---LFLYGVHTVSAALNNPSRKIFQLLA 73 Y+ + K + + ++ + LYG HTV+AAL NP RKI +L A Sbjct: 3 KREYSSFKGKSSHRKPPHGRGGRPAWRDRDDHNAPVILYGWHTVTAALLNPKRKIRKLFA 62 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 T+NAL RL + P P + V P ID+ +G +AVHQGL E PL + + + Sbjct: 63 TENALRRLTEENITLRPAP-EIVRPSVIDQRLGPDAVHQGLLAEADPLPALDIAKLPQDG 121 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++VLD + DPHN+GAILRSA AF+ ++TT R+SP + VLAKSASGALE +P + + Sbjct: 122 IVLVLDQITDPHNVGAILRSAAAFAVKAVVTTARHSPEATGVLAKSASGALELVPLVTVQ 181 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL AL +M GF T+GL S+ L + +AL+LGAEGKGLR T+ET ++A Sbjct: 182 NLARALNEMKEHGFLTVGLDSEGSADLAETELRAPLALVLGAEGKGLRQLTRETCGTVAR 241 Query: 254 LHMPGIIKALNVSNAAAVALY 274 L MPG IK+LNVSNA A+ALY Sbjct: 242 LDMPGEIKSLNVSNATALALY 262 >gi|323440686|gb|EGA98396.1| rRNA methyltransferase [Staphylococcus aureus O11] gi|323442371|gb|EGB00001.1| rRNA methyltransferase [Staphylococcus aureus O46] Length = 246 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ +I +K R + + GVH + A Sbjct: 1 MEQITSAQNNRIKQANKL-------------------KKKRERDKTGLALIEGVHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I QL A + A + + V + + + + G QG Sbjct: 42 YQSGI-VITQLFAIEPAR---LDQQIIAYAQEVFEINMKVAESLSG-TVTPQGFFAIIEK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + +Q ++++D V DP N+G ++R+A A D +I K + + +++ Sbjct: 97 PQYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P + T Q + + K+ + AL+LG EG+G+ Sbjct: 153 QGSVFHLPIMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSF----ALLLGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P+ T + + G ++LNV+ A ++ LY + Sbjct: 209 NPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245 >gi|315611869|ref|ZP_07886788.1| SpoU rRNA methylase [Streptococcus sanguinis ATCC 49296] gi|315316047|gb|EFU64080.1| SpoU rRNA methylase [Streptococcus sanguinis ATCC 49296] Length = 246 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 56/274 (20%), Positives = 106/274 (38%), Gaps = 31/274 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A ++ LD A P V + + + + QG+ Sbjct: 40 VQAGVT-IEKVFALESY---LDQLAAFPQTV---WVSEEILLDLADTQ-TPQGIVAVIQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G ++R+A A G+I + + + S +S Sbjct: 92 EEVGLPDFRQGKYLFL--EDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+ T ++ S S K + + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRMPVATFVVEAKKSNLPFLATTLSRDSKDYRELSSLENFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243 >gi|297627018|ref|YP_003688781.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922783|emb|CBL57361.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 307 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 74/289 (25%), Positives = 130/289 (44%), Gaps = 17/289 (5%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++ + ++ AK + R + + S ++ G + V AL Sbjct: 22 TPKAEDRTYH--KAYRAKQDQGPRKGTRPPHGAKPSSTGRGAAPDWVVGRNPVLEALQAN 79 Query: 65 SRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + + R + H + VP Q +DK+ AVHQG+AL+ P Sbjct: 80 -LPVRRAYVAEGSEHDDRLREIFKYAAEHSLSLLQVPRQELDKLTD-GAVHQGVALQLPP 137 Query: 121 LLSPTLD--------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 +D N LL+ D + DPHN+GAI+RSA AF DG+I +R S S Sbjct: 138 YEYADIDEVATKALGRDDNHGLLVACDGITDPHNLGAIIRSAAAFGADGVIIPERRSASL 197 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIAL 231 +A K+++GA + +++NL L+++ GF GL+ ++ + N + L Sbjct: 198 TASAWKASAGAAARLRVAKVTNLNRGLERLAKAGFVIAGLAGEADTDIAGIPGVNGPLVL 257 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++G+EG GL +E + + + +++LN S A A+ALY Sbjct: 258 VVGSEGAGLSRMVREHCDVLVSIPITSEVESLNASVATAIALYEVSRAR 306 >gi|163938099|ref|YP_001642983.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4] gi|163860296|gb|ABY41355.1| RNA methyltransferase, TrmH family, group 3 [Bacillus weihenstephanensis KBAB4] Length = 247 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 116/243 (47%), Gaps = 13/243 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ G + V AL R I ++L + A ++ + ++ P + +D++ Sbjct: 3 SEYIIGRNPVIEALRAG-RDINKILVAEGAAKGQVQIVLALAKENKVILQHAPKKKLDQL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V E HQG+ + A L+ ++LD + DPHN+G+I+R+A A Sbjct: 62 V--EGNHQGVIAQVAAYQYAELEDLFKLAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR + +A +AK+++GA+E+IP R++NL+ + ++ G G + K Sbjct: 120 GAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N I L++G+EGKG+ E + L M G + +LN S AA++ +Y Sbjct: 180 TDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239 Query: 278 NHF 280 Sbjct: 240 RKR 242 >gi|257875922|ref|ZP_05655575.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20] gi|257810088|gb|EEV38908.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20] Length = 279 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 75/271 (27%), Positives = 126/271 (46%), Gaps = 13/271 (4%) Query: 22 KLRRNHRDYKKMQSFNQKSRHTSQP------ENLFLYGVHTVSAALNNPS-RKIFQLLAT 74 + R N + + ++ + + E+ F++G H V+ AL K+F Sbjct: 7 RKRPNKKTAGRSEARQENRPDRRKEAAGEAIEDNFVFGYHAVAEALKEGRGNKLFLSEEA 66 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----AVR 130 + + PVK VP Q +D + + VHQG+ L P TLD + Sbjct: 67 RGEKIDRLKEMAREQAVPVKWVPKQKLDTMS-NQGVHQGMILAITPYQYLTLDELLAQTK 125 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 L ++LD++ DPHN G+I+R+A A DGII K + + ++ K+++GA+EHIP Sbjct: 126 EQPLYLILDNLEDPHNFGSIMRTADASGVDGIIIPKHRAVGITPIVVKTSTGAVEHIPVA 185 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R++NLT A+Q++ GF G + LI+G EG+G+ ++ Sbjct: 186 RVTNLTQAVQQLKKAGFWIFGTDMSGSDYRTWN-AQGAVGLIIGNEGRGMGEGLKKEVDQ 244 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 M + M G +++LN S AA + +Y Sbjct: 245 MLTIPMTGHVQSLNASVAAGLLMYQAFTSRN 275 >gi|139438525|ref|ZP_01772041.1| Hypothetical protein COLAER_01034 [Collinsella aerofaciens ATCC 25986] gi|133776064|gb|EBA39884.1| Hypothetical protein COLAER_01034 [Collinsella aerofaciens ATCC 25986] Length = 302 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 67/264 (25%), Positives = 113/264 (42%), Gaps = 11/264 (4%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALAR 80 + RD + + + P+ F+ G + AL L+A AL+R Sbjct: 32 KGQRDRTQAARPQRNRDNVQAPKGEFIEGRRAAAEALRTGFPVKCALIAEGGERDAALSR 91 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLL 135 L D N +K VP +D + A HQG+ALE + + L+ Sbjct: 92 LVDDLNAA-GVRIKYVPRAQLDALSSHGA-HQGIALEVGNFPYADVADILDRAGDGPALV 149 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VLDHV D N GAI+RSA G+I + + + K+++GA+ H+P ++ N+ Sbjct: 150 VVLDHVTDDGNFGAIVRSAEVVGAAGVIIANKRAAGVTVGSYKTSAGAVMHLPIAQVPNI 209 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 AL + + GF G S ++ ++AL++G+EG G+ E + L Sbjct: 210 ARALDDLKAAGFWVSGASERAEGSCWDAPFEGRVALVMGSEGDGISRLVLEKCDFLTKLP 269 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 G+ ++LNV+ A + Sbjct: 270 QRGMTESLNVAQATTALCFEWLRR 293 >gi|215430536|ref|ZP_03428455.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054] gi|289753732|ref|ZP_06513110.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054] gi|289694319|gb|EFD61748.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054] Length = 260 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 101/269 (37%), Gaps = 16/269 (5%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 + + A + HR + G + V+AAL + ++ T+ Sbjct: 5 RSARVATAVKLHRHV-----------GRRRAGRFLAEGPNLVAAALARG--LVREVFVTE 51 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 A R + H V V + + +A+ P + QL+ Sbjct: 52 VAARRHELLLA-AHEASVHLVTERAAKALSDTVTPAGLVAVCDLPATRLEDVLAGSPQLI 110 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 V + +P N G ++R A A +I R + ++++G++ IP + ++ Sbjct: 111 AVTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPCNGKCLRASTGSIFAIPVVVAPDV 170 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAH 253 A+ + + G Q + + D + L+ + A + G E GL + A H Sbjct: 171 GAAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAHGLSAEIAALADHRVH 230 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G ++LNV+ AAA+ LY + + Sbjct: 231 IPMSGGAESLNVAAAAAICLYESARALGR 259 >gi|291459362|ref|ZP_06598752.1| RNA methyltransferase, TrmH family, group 3 [Oribacterium sp. oral taxon 078 str. F0262] gi|291417961|gb|EFE91680.1| RNA methyltransferase, TrmH family, group 3 [Oribacterium sp. oral taxon 078 str. F0262] Length = 250 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 102/245 (41%), Gaps = 11/245 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTI 101 + E L G V A + + + +L + P+ V + Sbjct: 2 RDEQFTLIGRQPVLEAYRSG-QTVDRLFVQEGLREGTLSSILREARRQSTPLDFVKRSRL 60 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 D++ G E +A A D L++LD + DPHN+GAI+R+A Sbjct: 61 DEMSGGENHQGVMAYLAAYRYYEISDMLSDAREKGEDPFLILLDGIEDPHNLGAIIRTAN 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 G++ KR + +A AK+++GAL + +++NL+ ++++ G + Sbjct: 121 LAGAHGVVIPKRRAAGLTASAAKASAGALNYTKVAKVTNLSKTIEELKKEGIWFLCA-DM 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + ++ IAL++G EG+G+ +E+ A + M G I +LN S A V Y Sbjct: 180 EGESMYRQRLTGPIALVIGNEGEGVSRLVRESCDMRASIPMKGEIDSLNASVACGVLAYE 239 Query: 276 TQNHF 280 Sbjct: 240 IVRQR 244 >gi|159901149|ref|YP_001547396.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC 23779] gi|159894188|gb|ABX07268.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC 23779] Length = 262 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 92/256 (35%), Gaps = 9/256 (3%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN--ALARLDWD 84 + K ++S + + + GV V AL N + L + + R Sbjct: 11 NHHVKYLRSLLRSRKDRHSERRFVVEGVRLVGEAL-NFATPSLLLYVPEQLASTERGQQL 69 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 +L P I + QG+ + +++ L+++LD V DP Sbjct: 70 LDLIAQLPNAFATTPAILAGLSDVETPQGIIAVIPMPQFTS----QSASLILMLDGVQDP 125 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G +LRSA A ++ + S + +S G +P + N + + Sbjct: 126 GNVGTLLRSAEAAGVGQVLCLPGTADVWSPKVVRSGMGVHFRLPIVDGLNW-ETALPLIE 184 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 Q DS +Q LI+G E G+ T + S + M G +++LN Sbjct: 185 HCQQRFAAVQDSPLSYDQADLTQPTVLIIGNEANGVSATTLSYS-STITIPMLGSLESLN 243 Query: 265 VSNAAAVALYITQNHF 280 + A +V L+ Sbjct: 244 AAVAGSVLLFEAARQR 259 >gi|329767864|ref|ZP_08259378.1| RNA methyltransferase [Gemella haemolysans M341] gi|328838652|gb|EGF88251.1| RNA methyltransferase [Gemella haemolysans M341] Length = 271 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 73/270 (27%), Positives = 129/270 (47%), Gaps = 16/270 (5%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQP-----ENLFLYGVHTVSAALNNPSRKIFQLL--ATK 75 +++N++ YK+++ N++ + Q + + G + + A+ + L + Sbjct: 1 MKKNNKHYKELRLKNKEQKSQVQTAEVDLDKEVIAGRNAILEAIKSGREINKILFQEGIE 60 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------V 129 + + + VP + +D + HQG+ AP LD + Sbjct: 61 KGRLKSIFAIANEKKIICQEVPKRKLDNSTTER--HQGVIAYVAPYSYFELDEVVNNLEI 118 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 L++LDH+ DPHN+GAI+R+A A II KR + S K+++GA+EH+P Sbjct: 119 NKDTTLLILDHIEDPHNLGAIIRTAEASGVKAIIIPKRRAAVVSQTAVKASAGAIEHMPV 178 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETA 248 IR+SNLTDA++K+ GF G + + +I D +A+++G EG+G+ Sbjct: 179 IRVSNLTDAIKKLKEKGFWIAGTTLAERSEDYTKIAKDVPLAIVIGNEGEGMSKVVTNEC 238 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + HL M G I++LN S AA + +Y Sbjct: 239 DFLYHLPMLGKIQSLNASVAAGIIMYERIK 268 >gi|49483300|ref|YP_040524.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257425188|ref|ZP_05601614.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427851|ref|ZP_05604249.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257430486|ref|ZP_05606868.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397] gi|257433248|ref|ZP_05609606.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410] gi|257436087|ref|ZP_05612134.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus M876] gi|282903685|ref|ZP_06311573.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus C160] gi|282905454|ref|ZP_06313309.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908427|ref|ZP_06316258.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910712|ref|ZP_06318515.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913912|ref|ZP_06321699.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus M899] gi|282918835|ref|ZP_06326570.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus subsp. aureus C427] gi|282923957|ref|ZP_06331633.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus C101] gi|283957880|ref|ZP_06375331.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus A017934/97] gi|293500947|ref|ZP_06666798.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|293509904|ref|ZP_06668613.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus M809] gi|293526491|ref|ZP_06671176.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus M1015] gi|295427624|ref|ZP_06820256.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591422|ref|ZP_06950060.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|49241429|emb|CAG40113.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257272164|gb|EEV04296.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274692|gb|EEV06179.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278614|gb|EEV09233.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397] gi|257281341|gb|EEV11478.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410] gi|257284369|gb|EEV14489.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus M876] gi|282313929|gb|EFB44321.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus C101] gi|282316645|gb|EFB47019.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus subsp. aureus C427] gi|282321980|gb|EFB52304.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus M899] gi|282325317|gb|EFB55626.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282328092|gb|EFB58374.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330746|gb|EFB60260.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282595303|gb|EFC00267.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus C160] gi|283790029|gb|EFC28846.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus A017934/97] gi|290920563|gb|EFD97626.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus M1015] gi|291095952|gb|EFE26213.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|291467354|gb|EFF09871.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus M809] gi|295127982|gb|EFG57616.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576308|gb|EFH95024.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|312438487|gb|ADQ77558.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60] gi|315193807|gb|EFU24202.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus CGS00] Length = 246 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ +I +K R + + GVH + A Sbjct: 1 MEQITSAQNNRIKQANKL-------------------KKKRERDKTGLALIEGVHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I QL A + A + + V + + + + G QG Sbjct: 42 YQSGI-VITQLFAIEPAR---LDQQIIAYAQEVFEINMKVAESLSG-TVTPQGFFAIIEK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + +Q ++++D V DP N+G ++R+A A D +I K + + +++ Sbjct: 97 PQYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P + T Q + + K+ + AL+LG EG+G+ Sbjct: 153 QGSVFHLPVMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSF----ALLLGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P+ T + + G ++LNV+ A ++ LY + Sbjct: 209 NPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245 >gi|309810976|ref|ZP_07704774.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] gi|308434940|gb|EFP58774.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] Length = 270 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 96/259 (37%), Gaps = 11/259 (4%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K++++ ++S + + G V + I + +A R L Sbjct: 9 RVKQVKALGRRS-ARDKAGLFLVEGRQAVRELIRFAPMSIRDVYLDADAAERHPDLRELA 67 Query: 89 HPFP----------VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + V PQ + + E +A+ + + +++ Sbjct: 68 GEWADGAAAGERRFVHDCSPQVLAAMCDTEQPQGIIAVARPIDRPLADVLAGSPKFVVIC 127 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 +V DP N G ++R A A D +I + + L +S+ G+L H+P R S++ + Sbjct: 128 TNVRDPGNAGTVIRGADATGADAVILSDASVDLYNPKLVRSSVGSLWHLPISRGSSIEEI 187 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + G + L A ++G E GL P+ +E + + + G Sbjct: 188 FAACRAAGLTLHAADGVGETFLPDVDLATPHAWVMGNEAWGLEPEVREQCDDVVRVPIYG 247 Query: 259 IIKALNVSNAAAVALYITQ 277 ++LN++ AA V LY + Sbjct: 248 HAESLNLAMAATVCLYASA 266 >gi|297621955|ref|YP_003710092.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] gi|297377256|gb|ADI39086.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] Length = 272 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 98/279 (35%), Gaps = 21/279 (7%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 IS +++KI + R + + G + A++ Sbjct: 12 ISSLQNQKIKDVVRLRD-------------------RRQREKTGKFLIEGYRELLRAVDA 52 Query: 64 PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 + +K L + PV + KI ++ LA+ + Sbjct: 53 GFEIESLFICSKLFLGSHETALISRCGDPVYSCAEHVFRKISYRDRPDGLLAVAPQKRRA 112 Query: 124 -PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L S +V + + P N+G ILRS+ A DG+I R + + + +++ G Sbjct: 113 LKQLPTPDGSPFYVVAEAIEKPGNLGTILRSSDAAGVDGLIVCDRCTDIYNPNVVRASVG 172 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 L +P + + L+ + + + ++ + +A+++G E GL Sbjct: 173 TLFTVPVLEAEGE-ETLKWLKERSISVLAATPHARSLYTEVEMTGPLAIVVGTEQLGLSE 231 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 E A + M G+ +LNV+ A + LY A Sbjct: 232 LWMEHADIQVRIPMMGVADSLNVATATTLLLYEAIRQRA 270 >gi|225011172|ref|ZP_03701633.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-3C] gi|225004682|gb|EEG42643.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-3C] Length = 273 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 101/268 (37%), Gaps = 7/268 (2%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF-----QLLA 73 H + K+M +KSR +Q + + GV + A++ + +L+ Sbjct: 4 HPVIQSAQNPKVKEMLRLKEKSRARTQAQKFIIEGVRELELAIDCQYNILEFYYEPTILS 63 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNS 132 L A P + +K+ + + +A+ + + L + Sbjct: 64 ADALSGILKKLAAQPIAVSPTILSGAAFEKLAQRSSTEGIIAVAATKSHALSALKVTAKN 123 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +V + P NIGA+LR+A A D +I + + + +S+ G + + Sbjct: 124 PLYLVAEAPEKPGNIGALLRTADAAGIDAVIIANPKTDLYNPNVIRSSVGGVFTVAVAMG 183 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 ++ + L + + + + KP + A+++G E GL E + Sbjct: 184 TSK-EVLDFLQAAKANVYAAALQASKPHTEVSYTGTTAIVVGTEATGLEAIWLEQSNQNI 242 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G I ++NVS AA + ++ Sbjct: 243 RIPMRGKIDSMNVSVAAGILIFEAIRQR 270 >gi|167836767|ref|ZP_02463650.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia thailandensis MSMB43] Length = 247 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 114/239 (47%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + ++ R D A + + + Sbjct: 6 VLYGFHAVTARMRHDASTVAEVFYDSTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ L+ LD + LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDLPLAQNLAELLDGIEGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ L Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|320529196|ref|ZP_08030288.1| RNA 2'-O ribose methyltransferase substrate binding [Selenomonas artemidis F0399] gi|320138826|gb|EFW30716.1| RNA 2'-O ribose methyltransferase substrate binding [Selenomonas artemidis F0399] Length = 277 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 49/274 (17%), Positives = 91/274 (33%), Gaps = 10/274 (3%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 +++R + + + + + G+ + + + R F + Sbjct: 2 KKLERITSKSNRLVRLAHAVVHMPKRAKKEGLFAVEGLRLAESIMQSEWRIHFAFFTDRG 61 Query: 77 ALARLDW---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-----ALETAPLLSPTLDA 128 + + PV + + + + L T + Sbjct: 62 GESLAAAQLVEKLCERRTPVYLISDELCAALSDTDTPQGVLLIAERDPGTPLKRFMRPCS 121 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L +VLD V DP N+G ILR+AVA GI+ + + + + ++A G L ++ Sbjct: 122 NEPHPLYVVLDRVQDPGNVGTILRTAVAAGASGIVLLRGCADIYNNKVVRAAMGGLFYMN 181 Query: 189 YIRISNLTDALQKMHSWGFQ-TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + D LQ D + A++ G E G+ Sbjct: 182 VAQGVEEKDFLQWAQERSLNLYAAACDDMAQEHIHTDFTKTTAVVFGNEANGVSSAILAR 241 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 A ++ M G +++LNVS AAAV LY Sbjct: 242 A-RRVYVPMFGPVESLNVSAAAAVILYECVRQRI 274 >gi|257866303|ref|ZP_05645956.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30] gi|257873181|ref|ZP_05652834.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10] gi|257800261|gb|EEV29289.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30] gi|257807345|gb|EEV36167.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10] Length = 279 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 75/271 (27%), Positives = 126/271 (46%), Gaps = 13/271 (4%) Query: 22 KLRRNHRDYKKMQSFNQKSRHTSQP------ENLFLYGVHTVSAALNNPS-RKIFQLLAT 74 + R N + + ++ + + E+ F++G H V+ AL K+F Sbjct: 7 RKRPNKKTAGRSEARQENKPDRRKEAAGEAIEDNFVFGYHAVAEALKEGRGNKLFLSEEA 66 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----AVR 130 + + PVK VP Q +D + + VHQG+ L P TLD + Sbjct: 67 RGEKIDRLKEMAREQAVPVKWVPKQKLDTMSD-QGVHQGMILAITPYQYLTLDELLAQTK 125 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 L ++LD++ DPHN G+I+R+A A DGII K + + ++ K+++GA+EHIP Sbjct: 126 EQPLYLILDNLEDPHNFGSIMRTADASGVDGIIIPKHRAVGITPIVVKTSTGAVEHIPVA 185 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R++NLT A+Q++ GF G + LI+G EG+G+ ++ Sbjct: 186 RVTNLTQAVQQLKKAGFWIFGTDMSGSDYRTWN-AQGAVGLIIGNEGRGMGEGLKKEVDQ 244 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 M + M G +++LN S AA + +Y Sbjct: 245 MLTIPMTGHVQSLNASVAAGLLMYQAFTSRN 275 >gi|255535982|ref|YP_003096353.1| rRNA methylase [Flavobacteriaceae bacterium 3519-10] gi|255342178|gb|ACU08291.1| rRNA methylase [Flavobacteriaceae bacterium 3519-10] Length = 265 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 99/251 (39%), Gaps = 11/251 (4%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKT 95 + + ++ F++G+ V A+ KIF A + + H Sbjct: 11 ESGQAEPNKKDDFIFGLRPVIEAIEAGKTIDKIFMQNALQGDIYYELKTLLSKHNIRPNY 70 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIG 148 VP + +++ HQG+ + + + L + L++LD + D N G Sbjct: 71 VPIEKLNRFT--RKNHQGVVAFISDVPFESIQDVLPQLFEEGKTPFLLILDRLTDVRNFG 128 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI R+A II ++ + ++ K+++GA+ ++ + NL A+ + G Q Sbjct: 129 AICRTAECVGVHAIILPEKGAAPINSDAIKTSAGAIYNLRICKEKNLAHAVDFLQQSGLQ 188 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 S ++K + A+++G E G+ + + L + G ++LNVS A Sbjct: 189 VFSASEKAQKLIYDVDFTQPCAIVMGNEETGISKEVLHHSDEKIKLPIEGKTQSLNVSVA 248 Query: 269 AAVALYITQNH 279 LY Sbjct: 249 CGAILYEAVRQ 259 >gi|302535870|ref|ZP_07288212.1| tRNA/rRNA methyltransferase [Streptomyces sp. C] gi|302444765|gb|EFL16581.1| tRNA/rRNA methyltransferase [Streptomyces sp. C] Length = 323 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 67/283 (23%), Positives = 112/283 (39%), Gaps = 18/283 (6%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE-----NLFLYGVHTVSAALNNPS---RKI 68 + K + +R M K R + + + G + V AL + Sbjct: 38 KAEDRKKHKANRIANAMARQAAKRRPAPRRGGPKGTSEMVVGRNPVFEALRDGVPATTLY 97 Query: 69 FQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 Q + R + P +D++ HQGL L+ P + Sbjct: 98 VQQFIDNDERVRDALKLAGERGNINLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPE 156 Query: 128 A-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L++ LD V DP N+GAI+RS AF G++ +R + +A K++ Sbjct: 157 DLLDAAHDNGEDALIVALDGVTDPRNLGAIVRSVSAFGGHGVVIPERRAAGMTAGAWKTS 216 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKG 239 +G P R++NLT ALQ G +GL+++ ++ + +++G+EGKG Sbjct: 217 AGTAARTPVSRVTNLTRALQDYKKAGITVVGLAAEGTHEVQDLDALGGPVVIVVGSEGKG 276 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 L E + + MPG ++LN AA V LY A+ Sbjct: 277 LGRLVGENCDYLVRIPMPGGAESLNAGVAAGVVLYEAARKRAQ 319 >gi|154249698|ref|YP_001410523.1| RNA methyltransferase [Fervidobacterium nodosum Rt17-B1] gi|154153634|gb|ABS60866.1| RNA methyltransferase, TrmH family, group 3 [Fervidobacterium nodosum Rt17-B1] Length = 234 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 100/232 (43%), Gaps = 5/232 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGK 107 +YG + + L + + + + + LD P P + K+ G+ Sbjct: 2 IVYGRNVLKEILTSNH-PVKLIYFSDSHDKELDKLIEQVKERKLPYTIAPKNVLKKLCGE 60 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 E G+ ++ + + +++LD V DP N+GAI+R+AVA + ++ TK Sbjct: 61 EKNQ-GVVIDIGDFQYADESYLPENPFIVLLDQVQDPQNLGAIVRTAVAAGVNMVVLTKD 119 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + K+++G + IP + NL ++K+ G G KPL + Sbjct: 120 NSAHVTPGSIKASAGTIFRIPIVITVNLARYIEKLKDKGVWIYGA-DMRGKPLWEVKLER 178 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + ++ G EG G+R +E+ + + M I +LNVS +A + +Y Sbjct: 179 PLGIVFGNEGSGIRQLVKESCDELVSIPMKTPIDSLNVSVSAGILIYEVLRR 230 >gi|323526473|ref|YP_004228626.1| tRNA/rRNA methyltransferase SpoU [Burkholderia sp. CCGE1001] gi|323383475|gb|ADX55566.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1001] Length = 262 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 110/265 (41%), Gaps = 8/265 (3%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + + L G H SA L+ R + T+ ALA Sbjct: 2 KAITSRDNPLYKRLKALAGSTHQQRRSGHALLEGFHLASAYLDVAGRPDMCI-VTEGALA 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + V P + + G+ L L +P D V + +++ Sbjct: 61 HDEAQAIVSRIEDHLIVTLPDALFGQLSNVVHGVGMLLLVEKLSAPLPDTVEETCIVL-- 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +S GA + + Sbjct: 119 DGVQDAGNVGSILRSAAAAGIQRVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDVDA--- 175 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + + S + +++ + ++A + G EG G+ ++ + + PG Sbjct: 176 AALIGRLAVPIVITDSHGAEAIDECDLSGELAWVFGNEGAGVSQAWRDAVSLRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYI-TQNHFAK 282 +++LNV+ AAAV ++ + A+ Sbjct: 236 GMESLNVAAAAAVCMFEQCRQQRAR 260 >gi|116328938|ref|YP_798658.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330456|ref|YP_800174.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121682|gb|ABJ79725.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124145|gb|ABJ75416.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 277 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 102/282 (36%), Gaps = 26/282 (9%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 I+ +EK+ + + +H F+ G +S A + Sbjct: 12 ITSFSNEKLKHISNLKEK-------------------KHRETSGLFFIEGYREISRAQKS 52 Query: 64 PS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 R L + + L ++ VP + +KI ++ +A + Sbjct: 53 GKVRFQNVLYSPECFLGENEFSLIRSIGVKNIKVPKKVFEKISYRDRPDGLIATAHFFPI 112 Query: 123 SPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + + + ++V++ V P N+G ILR+A +I + + + Sbjct: 113 GLDFFEKKSETFKKLKPILVIEGVEKPGNLGTILRTAEGAGFHTVIVSDPKLDLFNPNVI 172 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 ++++GAL + + ++T+ ++ ++KK KIAL+ G+E Sbjct: 173 RASTGALFTLDVYLGEIE-TIYGILKKNHYRTLAVTPEAKKFYFDADLKGKIALVFGSEQ 231 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 GL + + L M G +LN++ +A + +Y Sbjct: 232 YGLSSYARNHSDEYLSLPMLGEADSLNLAMSAGILMYEVIRQ 273 >gi|145222039|ref|YP_001132717.1| RNA methyltransferase [Mycobacterium gilvum PYR-GCK] gi|315446219|ref|YP_004079098.1| rRNA methylase, , group 3 [Mycobacterium sp. Spyr1] gi|254800512|sp|A4T5L0|Y1447_MYCGI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mflv_1447 gi|145214525|gb|ABP43929.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium gilvum PYR-GCK] gi|315264522|gb|ADU01264.1| rRNA methylase, putative, group 3 [Mycobacterium sp. Spyr1] Length = 314 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 116/272 (42%), Gaps = 13/272 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP-SRKIFQLLATKNA 77 A R +H K+ ++++ + + + G + V L + +A Sbjct: 41 AHERPHHPAGKRAAKAARQAQGRHKKTDDTEIVLGRNPVVECLRAGVPATALYVALGTDA 100 Query: 78 LARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------- 128 RL + V +D++ +HQG+AL+ P D Sbjct: 101 DERLTESVQMAADRGISILEVQRHDLDRMAA-NGLHQGIALQVPPYAYAHPDDLLRDAKS 159 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA P Sbjct: 160 DAAPALLVALDNISDPRNLGAIVRSVAAFGGHGVVLPQRRSASVTAVAWRTSAGAAARTP 219 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R +NL L++ G Q +GL + +++ +++G+EGKGL +E Sbjct: 220 VARATNLNRTLKQYADAGLQVVGLDAGGDTTIDEIDGLTPTIVVVGSEGKGLSRLVRENC 279 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G ++LN S AA V L Sbjct: 280 DRIVSIPMAGPTESLNASVAAGVVLAEIARQR 311 >gi|313896326|ref|ZP_07829879.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 137 str. F0430] gi|312975125|gb|EFR40587.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 137 str. F0430] Length = 277 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 49/274 (17%), Positives = 92/274 (33%), Gaps = 10/274 (3%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 +++R + + + + + G+ + + + R F + Sbjct: 2 KKLERITSKSNRLVRLAHAVVHMPKRAKKEGLFAVEGLRLAESIMQSEWRIRFAFFTDRG 61 Query: 77 ALARLDW---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-----ALETAPLLSPTLDA 128 + + PV + + ++ + L T + Sbjct: 62 GESLAAAQLVEKLCERRTPVYLISDELCAELSDTDTPQGVLLIAERDPGTPLKRFMRPCS 121 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L +VLD V DP N+G ILR+AVA GI+ + + + + ++A G L ++ Sbjct: 122 NEPHPLYVVLDRVQDPGNVGTILRTAVAAGASGIVLLRGCADIYNNKVVRAAMGGLFYMN 181 Query: 189 YIRISNLTDALQKMHSWGFQ-TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + D LQ D + A++ G E G+ Sbjct: 182 VAQGVEEKDFLQWAQERSLNLYAAACDDMAQEHIHTDFTKTTAVVFGNEANGVSSAILAR 241 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 A ++ M G +++LNVS AAAV LY Sbjct: 242 A-RRVYVPMFGPVESLNVSAAAAVILYECVRQRI 274 >gi|255003358|ref|ZP_05278322.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str. Puerto Rico] gi|255004482|ref|ZP_05279283.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str. Virginia] Length = 251 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 79/244 (32%), Positives = 126/244 (51%), Gaps = 13/244 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 ++ G H AAL NP+R +L T L + A + K V + I KI+G Sbjct: 2 WICGRHVCIAALQNPNRVCRDMLVTGEFLKKYPEVARMAQSKGVYPKRVAAEKISKILGH 61 Query: 108 EAV-HQGLALETAPLLSPTLDAVRNSQLL----------MVLDHVNDPHNIGAILRSAVA 156 + HQG+AL L +R ++ ++LD V D +N+GAI+RSA Sbjct: 62 GGMAHQGIALMVDELSGRDGSKLRVEDIVSANPSEASTVVILDRVTDINNVGAIVRSAAC 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F D +I + +SPSES + K++SGA + +P +++ NL ++ + G+ G+ + Sbjct: 122 FDADAVILPEHHSPSESCTITKASSGAADIVPVVQVGNLVKTMEYLKQNGYWCYGMDAGG 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K L + ++ A+ILG+EGKG+R T+E + + M I +LNVSNAAA+ALY + Sbjct: 182 DKALHEISFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALYSS 241 Query: 277 QNHF 280 Sbjct: 242 YLQL 245 >gi|227503950|ref|ZP_03933999.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC 6940] gi|227199472|gb|EEI79520.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC 6940] Length = 315 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 123/288 (42%), Gaps = 26/288 (9%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ K H AKL R R RH + + + G + V L+ Sbjct: 38 TPKAEDRVYHAK--HKAKLERERR---------NSGRHQKETAEMVV-GRNPVVECLHA- 84 Query: 65 SRKIFQLLATKNALA--RLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + RL + P+ + +D++ G +HQG+ L+ P Sbjct: 85 KVPATSLYIVQGTRNDARLSEAVAIANSRNIPILEIQRHEMDRMTG-NGMHQGIGLQIPP 143 Query: 121 LLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + ++LD++ DP N+GA++RS AF G+I +R S S + Sbjct: 144 YKYADFHELMDRAKDAGEPGMFVILDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVT 203 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALI 232 AV ++++G +P R++N+T +Q+ G+Q +GL + + D + ++ Sbjct: 204 AVAWRTSAGTAARLPVARVTNVTRTVQEFQQAGYQVVGLDAGGEHTLDTYTGGKDPVVIV 263 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +G+EGKG+ +E + + M +++LN S AA L Sbjct: 264 IGSEGKGISRLVRENCDVIMSIPMTAWVESLNASVAAGAVLSEFARQR 311 >gi|226951819|ref|ZP_03822283.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] gi|294649070|ref|ZP_06726515.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|226837359|gb|EEH69742.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] gi|292825055|gb|EFF83813.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 248 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 106/241 (43%), Gaps = 12/241 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 YGVH+V L ++ L K RL L V+ +++K+ G+ Sbjct: 8 YGVHSVETLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGQP 67 Query: 109 AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ P + L + LL+ LD V DPHN+GA +R+A A + Sbjct: 68 -FHQGVVAAVRPHPTLNEKDLDQLMQQSPNALLLALDQVTDPHNLGACIRTAAAMGVQAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPL 220 I + + S + K A+G E + +I+++NL K + + + P+ Sbjct: 127 IVPRDRAASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKDTTHTRVIGTMLDEKALPI 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +Q + + +++GAE GLRP TQ ++ M G +++LNVS A +ALY Sbjct: 187 QQCDFSGPVVIVMGAEDTGLRPITQSQCDQTVYIPMSGDLQSLNVSVATGMALYEACRQR 246 Query: 281 A 281 Sbjct: 247 N 247 >gi|167582034|ref|ZP_02374908.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia thailandensis TXDOH] Length = 247 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 114/239 (47%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + ++ R D A + + + Sbjct: 6 VLYGFHAVTARMRHDASTVAEVFYDSTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ L+ LD + LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ L Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|332885426|gb|EGK05675.1| RNA methyltransferase, TrmH family, group 3 [Dysgonomonas mossii DSM 22836] Length = 246 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 96/241 (39%), Gaps = 7/241 (2%) Query: 46 PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 E ++G+ + A+ K+ + L++ + V+ VP + +D+ Sbjct: 2 KEKEMIFGIRAIIEAIEAGKEIDKVIVKRELQGDLSKELFALLKSRDIAVQRVPNERLDR 61 Query: 104 IVGKEAVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K L L ++VLD + D N GAI R+ Sbjct: 62 FTRKNHQGVIAFLSAITYEHIEDIIPFLYEQGKDPFILVLDGITDVRNFGAIARTCEVAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D I+ + S + +A K+++GAL IP + +LT+A+Q + + G + + + Sbjct: 122 VDAIVIPAKGSVTVNADAIKTSAGALLKIPVCKEQSLTNAIQFLKNSGIKVVAATERGAD 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + IA ++GAE G+ A ++ + G I +LNVS AA V +Y Sbjct: 182 DYTAVDYSGPIAFVMGAEDTGVSNDNLRIADNLVKIPQFGTIGSLNVSVAAGVLIYEVIR 241 Query: 279 H 279 Sbjct: 242 Q 242 >gi|293364739|ref|ZP_06611456.1| SpoU rRNA methylase [Streptococcus oralis ATCC 35037] gi|291316189|gb|EFE56625.1| SpoU rRNA methylase [Streptococcus oralis ATCC 35037] Length = 246 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 105/274 (38%), Gaps = 31/274 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A ++ +L P V + + + + QG+ Sbjct: 40 VQAGVT-IEKIFALESYRDQL---VAFPQTV---WVSEEILRDLADTQ-TPQGIVAVIQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G ++R+A A G+I + + + S +S Sbjct: 92 EEVGLPDFRQGKYLFL--EDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+ ++ + S S K + + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRMPLVSFVEEAKKSNLPILATTLSRDSKDYRELSSLENFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243 >gi|313668290|ref|YP_004048574.1| RNA methyltransferase [Neisseria lactamica ST-640] gi|313005752|emb|CBN87206.1| putative RNA methyltransferase [Neisseria lactamica 020-06] Length = 261 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 92/282 (32%), Gaps = 24/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + + + + Q L GVH + Sbjct: 1 MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L + + + + + + +V + KI + Sbjct: 43 LQSGGKPLGVYIPEAKMPSEEVRKLMAVLPEDGFFSVSDGILKKISS-LTCADDVLALID 101 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + L + +VLD V DP N+G +LRSA A ++ K + + S + ++ Sbjct: 102 IPDAGVLPDKGDC---VVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRA 158 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 GA + I + + L + + L E + A + G EG G Sbjct: 159 GMGAHF-LSEIYPQADLEIWLARYEDRVFATALREEKQAVLYNEDLREPTAWVFGNEGAG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + A + M ++LNV+ AA + L+ + Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRS 259 >gi|257898078|ref|ZP_05677731.1| RNA methyltransferase [Enterococcus faecium Com15] gi|257835990|gb|EEV61064.1| RNA methyltransferase [Enterococcus faecium Com15] Length = 254 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 57/276 (20%), Positives = 100/276 (36%), Gaps = 24/276 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I LK H K R + E L G H + A Sbjct: 1 MKEIQSAKNPRIKELKKLHKKKYR-------------------EEKEEYLLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ V + +D + LA+ Sbjct: 42 -ASSDAEIKELFVTQRGRKEWGDWLAANKGISTFLVSDEVMDAVSDLPTPQGILAVMALT 100 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 101 AEGAPDFSGGW----LLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P ++ ++ L++ K+D A+I+G EG+G+ Sbjct: 157 QGSNYHLPVLQQDLTEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQGV 216 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ M G ++LNV AA + LY Sbjct: 217 SQGILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252 >gi|30248368|ref|NP_840438.1| putative tRNA/rRNA methyltransferase [Nitrosomonas europaea ATCC 19718] gi|52783307|sp|Q82XD1|RLMB_NITEU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|30138254|emb|CAD84262.1| putative tRNA/rRNA methyltransferase [Nitrosomonas europaea ATCC 19718] Length = 260 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 7/240 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +++G H +++ L I ++ + AR + + K+ G Sbjct: 6 YIFGFHAITSRLRQHPDSIKEIYLDTNRHDQRARDLMSLAETTSTRLILCEQDRLCKMTG 65 Query: 107 KEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A T TL+ + LL+VLD V DPHN+GA LR A AF + Sbjct: 66 TTRHQGVAAHVTKLRRYATLEDLLEGLTEPALLLVLDGVKDPHNLGACLRVADAFGVHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + K + SA + K ASGA++ +P+ ++NL L+++ G +G ++D+ L+ Sbjct: 126 VVPKDRAVGLSATVHKVASGAVDTVPFFAVTNLARTLRELKEMGLWIVGTAADAPDTLDS 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +A +LGAE G+R T+E + + M G I++LNVS +A + L+ T ++ Sbjct: 186 VTLTRPLAWVLGAEDGGMRRLTREACDLLVSIPMSGSIESLNVSVSAGICLFETFRQHSQ 245 >gi|262373126|ref|ZP_06066405.1| SpoU rRNA methylase [Acinetobacter junii SH205] gi|262313151|gb|EEY94236.1| SpoU rRNA methylase [Acinetobacter junii SH205] Length = 258 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 96/257 (37%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K ++ + + + + L G H + L RKIF L T+ AL + Sbjct: 8 SKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLSWLQQ-QRKIFSLFTTEQALDHPEL 66 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + + + K + + + L++ ++V D Sbjct: 67 QEIIEIHQGHIFIISEVLYKDLSTLGTTLPCLAIVDLPKTSQTIDFKADTLIL--ENVQD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LRSA A + II T+ + S + ++ GA + LTD L K Sbjct: 125 PGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSVNCFENFQLTDILPKFE 184 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F T S S + ILG EG+G+ E A + PG ++L Sbjct: 185 IPVFVTSSHRSTSLYSKD---LTQACVWILGNEGQGVSDYALEHA-EAVTIPQPGGQESL 240 Query: 264 NVSNAAAVALYITQNHF 280 NV+ A ++ + Sbjct: 241 NVAIAGSICFFEMVRQR 257 >gi|257094430|ref|YP_003168071.1| tRNA/rRNA methyltransferase SpoU [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046954|gb|ACV36142.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 272 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 53/262 (20%), Positives = 93/262 (35%), Gaps = 4/262 (1%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 + R++ YK ++ Q R + L G+H + A + I +++ Sbjct: 2 RRIVSRDNPHYKVLKKLLQSGRERRRTGLAVLDGMHLIDAYSRHCGIPIEIVVSDSGTGR 61 Query: 80 RLDWDANLPHPFPVKT-VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 V V + + G+ A +VL Sbjct: 62 PEIASYLESGQVGVTITVLGDVLFAELAVVETPSGIMAIIDRPRPLQGPAPDMQADTVVL 121 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V DP N+G+ILRSA A I+ + + + K+ A+ + + D Sbjct: 122 DGVQDPGNVGSILRSAAAAGFRQILLSPDCAQAW---APKTLRAAMGAHFQLDVLEHCDL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + ++ Q + + L +A + G+EG G+RP + MPG Sbjct: 179 PAFLSAYRGQPVATLLGASTSLYGADLAGPVAWVFGSEGLGVRPAVAALTRLQVRIPMPG 238 Query: 259 IIKALNVSNAAAVALYITQNHF 280 ++LNV+ AAAV L+ T Sbjct: 239 PSESLNVAAAAAVCLFETVRRR 260 >gi|298694424|gb|ADI97646.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ED133] Length = 246 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 106/277 (38%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ +I +K R + + GVH + A Sbjct: 1 MEQITSAQNNRIKQANKL-------------------KKKRERDKTGLALIEGVHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I QL A + A + + V + + + + G QG Sbjct: 42 YQSGI-VITQLFAIEPAR---LDQQIIAYAQEVFEINMKVAESLSG-TVTPQGFFAIIEK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + +Q ++++D V DP N+G ++R+A A D +I K + + +++ Sbjct: 97 PQYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P + + T Q + + K+ + AL+LG EG+G+ Sbjct: 153 QGSVFHLPIMTLDLDTFITQFNGPVYGTALENAVAYKEVTSIDSF----ALLLGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P+ T + + G ++LNV+ A ++ LY + Sbjct: 209 NPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245 >gi|50085696|ref|YP_047206.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] gi|49531672|emb|CAG69384.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] Length = 266 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K ++ ++ + + L G H + L RKI L T+ AL D+ Sbjct: 16 SKDNAKIKHLRGLIEQQSFRKKQKQTVLEGTHLCLSWLQE-QRKIISLFTTEVALKHADF 74 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + V +++ + + S + L++ +++ D Sbjct: 75 EKIIDIYQGAIFVISESLYRDLSTLGTTLACLAVIDLPQSSQAIDFKKDTLIL--ENIQD 132 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LRSA A + ++ TK + S + ++ GA + L L++ Sbjct: 133 PGNVGTLLRSAAAANIKQVVCTKGSASLWSPRVLRAGMGAHFSLYTFENIELDMILEQFD 192 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F T + + + ILG EG+G A + PG ++L Sbjct: 193 IPVFVTSSHHATNLYDQD---LTKPCVWILGNEGQGASEYALSHA-QAITIPQPGGQESL 248 Query: 264 NVSNAAAVALYITQNHF 280 NV+ A ++ + Sbjct: 249 NVAIAGSICFFEMVRQR 265 >gi|83720095|ref|YP_443037.1| RNA methyltransferase [Burkholderia thailandensis E264] gi|167620200|ref|ZP_02388831.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia thailandensis Bt4] gi|257139267|ref|ZP_05587529.1| RNA methyltransferase [Burkholderia thailandensis E264] gi|83653920|gb|ABC37983.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia thailandensis E264] Length = 247 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 114/239 (47%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + ++ R D A + + + Sbjct: 6 VLYGFHAVTARMRHDASTVAEVFYDSTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ L+ LD V LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDLPLAQNLAELLDGVAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ L Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|295396932|ref|ZP_06807055.1| RNA methyltransferase [Aerococcus viridans ATCC 11563] gi|294974825|gb|EFG50529.1| RNA methyltransferase [Aerococcus viridans ATCC 11563] Length = 271 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 70/267 (26%), Positives = 126/267 (47%), Gaps = 16/267 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPEN-----LFLYGVHTVSAALN--NPSRKIFQLLATKNALAR 80 RD ++ Q+ +++ R T+ E F+YG H L + K+F A+ Sbjct: 3 RDNQRQQNRDRRPRSTNNEEELDQSPDFVYGFHAAMEVLEGDHDVNKVFLQTGLNEKNAQ 62 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQ 133 A V VP + +D + HQG+ + A L+ + Sbjct: 63 AILKAANKRNILVSNVPKEKLDTLSD-GGNHQGVVMAIAAYKYAELEDIFKKAEEANEDP 121 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++MVLD + DPHN+G+ILR+A A G+I R + + V+AK+++GA+EH+P +R++ Sbjct: 122 IIMVLDGIEDPHNLGSILRTADASGVHGVIIQNRRAVGLTQVVAKTSTGAIEHVPVVRVT 181 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N++ + + G + + + + Q IA+++G EGKG+ P ++ M Sbjct: 182 NISKTIDLLKERGVW-VFGTDMKGQSMWQMDAALPIAVVIGNEGKGVSPGVKKHLDGMIT 240 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 + M G +++LN S AA + +Y Sbjct: 241 IPMRGHVQSLNASVAAGLLMYQIYQSR 267 >gi|81429291|ref|YP_396292.1| putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] gi|78610934|emb|CAI55986.1| Putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] Length = 295 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 72/291 (24%), Positives = 129/291 (44%), Gaps = 19/291 (6%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS------QPENLFLYGVHTVSAA 60 K + + ++ K++ + R K + K + + F+ G H Sbjct: 3 KNNNQSYNQKNNEFNSRRTAKNTAKPTRRPANKKPAAPVEEAAVEEQTDFVIGKHASLET 62 Query: 61 LN-NPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 L + ++KI ++ ++ VP +D + ++ HQG+ L Sbjct: 63 LKTSDAKKINKIFLQDGLKADFVHDVVKLAKEKRLIIQNVPKNKLDLLSDRQ-NHQGIIL 121 Query: 117 ETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 AP ++D +++LD++ DPHN+G+I+R+A A GII K + Sbjct: 122 AIAPFEYASVDDIFAKAKAQEEEPFILILDNLEDPHNLGSIMRTADAVGVHGIIIPKHRA 181 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 ++ +AK+++GA+EHIP R++NLT ++K+ G G + + K I Sbjct: 182 VGLTSTVAKTSTGAIEHIPVARVTNLTQEIKKLKDRGLWIFGTDMAGTDYRKWDAK-GPI 240 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 LI+G EGKGL P ++ + M G +++LN S AA V +Y N Sbjct: 241 GLIIGNEGKGLSPIVKKEVDQTLTIPMVGHVQSLNASVAAGVLMYQAYNSR 291 >gi|294631997|ref|ZP_06710557.1| tRNA/rRNA methyltransferase [Streptomyces sp. e14] gi|292835330|gb|EFF93679.1| tRNA/rRNA methyltransferase [Streptomyces sp. e14] Length = 290 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 103/262 (39%), Gaps = 6/262 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 ++ + ++++Q+ + + GV ++ A+++ L L+ Sbjct: 3 VQRISTRNARFQQLQTLLGNRTKRGRAREFLVQGVRPITMAVDHGWTVRSLLYDADRPLS 62 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 R D + P+ + ++ K + + LA+ + AV + L ++ Sbjct: 63 RWAEDLLRRTDAERVAMAPRLLAELSEKADGAAEVLAVVAMEPDDLSRIAVHDGFLGLLF 122 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-----HIPYIRIS 193 D P NIG+I+RSA AF DG+I T + ++++G+ P Sbjct: 123 DRPTQPGNIGSIVRSADAFGADGLIVTGHAADPYDPKSVRASTGSFFAVPVVRSPSHHEV 182 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 A ++ +G D + + + + L++G E GL ++ + Sbjct: 183 VEWLAKERAQGRPVAVVGTDEDGEADVSEFDLTQPVLLLIGNETAGLSAAWRDLCDHVVS 242 Query: 254 LHMPGIIKALNVSNAAAVALYI 275 + M G +LN SNAA+V LY Sbjct: 243 IPMTGSASSLNASNAASVVLYE 264 >gi|319952204|ref|YP_004163471.1| RNA methyltransferase, trmh family, group 3 [Cellulophaga algicola DSM 14237] gi|319420864|gb|ADV47973.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga algicola DSM 14237] Length = 254 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 111/240 (46%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG+ + A+N K+F K L + + VP + ++++ + Sbjct: 16 IYGIRAIIEAINADKAIDKVFIQKGLKGDLFKEFETLIRRNGINSSYVPVEKLNRLT--K 73 Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ +P+ TL+ + L ++LD ++D N GAI+R+A DG Sbjct: 74 GNHQGVIATISPITFFTLEELVEKVSAKETTPLFLLLDQLSDVRNFGAIIRTAECTGVDG 133 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II K+ + +A K+++GA +P ++ ++ DA+ + + G +TI + ++ + Sbjct: 134 IIIQKKGAAPVTADTIKTSAGAAFKVPIAKVDHIKDAVFYLQASGIKTIAATEKTENSVY 193 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + A+I+G+E G+ P + A + + G I +LNVS A V LY + Sbjct: 194 DISFKEPCAIIMGSEDLGISPSILKVVDDKAKIPLLGEIGSLNVSVACGVFLYEAVRQRS 253 >gi|257792139|ref|YP_003182745.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella lenta DSM 2243] gi|257476036|gb|ACV56356.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella lenta DSM 2243] Length = 248 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 15/244 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 F+ G V AL L+ ++ L V+ VP + +D Sbjct: 4 FIEGKRPVIEALRTGVPIKSILMADNMQRDGLIEDILRKAKRAGATVEMVPRKVLDGKSD 63 Query: 107 KEAVHQGLALETAPLLS-----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 HQG+ + AP + + L+++LDH+ D N+GA+ RSA Sbjct: 64 -RGSHQGVMAKAAPFPYVGIGDVIDAAGKSAEQHDGRALVIILDHITDAGNLGAVSRSAE 122 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A GI+ + S A KS++GA+ H+P ++SNL + ++ GF G + Sbjct: 123 AVGACGIVIPNKRSAHVEASTYKSSAGAIAHVPVAQVSNLVQTMSRLKEEGFWIAGATEH 182 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +K + + KIAL++G E +G+ E + L + G + +LNV+ AA +Y Sbjct: 183 AKDLIWKSNLKGKIALVMGNEQEGISRLVMEHCDFLVKLPIEGEVASLNVAQAATACMYE 242 Query: 276 TQNH 279 Sbjct: 243 WLRQ 246 >gi|73662967|ref|YP_301748.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495482|dbj|BAE18803.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 246 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 101/277 (36%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ ++ KI + +K R + + G H + A Sbjct: 1 MEIITSAQNNKIKNANKL-------------------KKKRERDKTGLALIEGYHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + KI QL D + F + + + QG Sbjct: 42 YKS-KIKIQQLYVVDADRIHDDMISYAEEVFEINLKVAEVL----SGTVTPQGFFAVIEK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + +A + ++++D + DP N+G ++R+A A D I+ K + + +++ Sbjct: 97 PIYESNNAKQ----VLLIDCIQDPGNLGTLIRTADAAGLDLIVLEKGTADPYQDKVMRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ HIP + + + + QE AL+LG EG+G+ Sbjct: 153 QGSVFHIPILTTELSGFIADFEGDVYGTALEDAVVYNQIPSQETF----ALLLGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K T + + G ++LNV+ A ++ +Y + Sbjct: 209 NDKLLSQTTQNLTIPIYGKAESLNVAIAGSIVMYHLK 245 >gi|325288493|ref|YP_004264674.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobotulus glycolicus DSM 8271] gi|324963894|gb|ADY54673.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobotulus glycolicus DSM 8271] Length = 257 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 102/240 (42%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGK 107 ++G + V L + L+ ++N R +L P + V +DK G Sbjct: 7 LVFGRNAVIELLKSGHPVNKVLINSENRSNRNADILSLMKERGVPYQFVERAVLDKFSGG 66 Query: 108 EAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + +A A T D ++VLD + DPHN+GA+LR+A A G Sbjct: 67 DKHQNIVAFTAAREYVETEDILNIARQKGEDPFILVLDELEDPHNLGALLRTADAAGVHG 126 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II R S + +AK+++GA+E++P R+ NL K + + + + Sbjct: 127 IIIPTRRSVGLTPAVAKTSAGAIEYVPVARVGNL-VQALKQLKKAGCWVTGAEAGGRDVF 185 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + L++G E KGL +ET + L M G + +LN S A ++ +Y + Sbjct: 186 SADLSGPRVLVVGGEDKGLGRLIKETCDEIVSLPMLGKMSSLNASAAGSILMYEVRRQRI 245 >gi|260061888|ref|YP_003194968.1| putative tRNA:rRNA methyltransferase [Robiginitalea biformata HTCC2501] gi|88786021|gb|EAR17190.1| putative tRNA:rRNA methyltransferase [Robiginitalea biformata HTCC2501] Length = 244 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 105/238 (44%), Gaps = 7/238 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDKIVG-- 106 ++G+ V AL L+ L R +A H + VPP+ + Sbjct: 7 IFGIRAVLEALEAGKTPEKILVRKDLTGNLFRQLQEAAKKHNMSLTVVPPERFRRFESRN 66 Query: 107 KEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + V L+ T + +D + L ++LD V+D N+GAI+R+A G+ Sbjct: 67 HQGVVAVLSPITYREHTALIDETLARDKAPLFLLLDGVSDVRNLGAIIRTAECAGVSGLF 126 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 S SA K+++GA ++P R +L D + + + G + + + ++ L + Sbjct: 127 LPASGSAPVSADTIKTSAGAAFNLPIARSPHLKDVVYYLQASGVRLVAATEKAESTLYEA 186 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +ALI+G+E +G+ P + A L M G I++LNVS A V L+ Q A Sbjct: 187 DLTGPLALIMGSEDRGIHPSLLKLCDIQAQLPMQGSIESLNVSVACGVFLFEAQRQRA 244 >gi|323526270|ref|YP_004228423.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001] gi|323383272|gb|ADX55363.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. CCGE1001] Length = 247 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 67/239 (28%), Positives = 116/239 (48%), Gaps = 7/239 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + + K+ A + + + Sbjct: 6 VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLHAAKEAGVRLIAADETRLWGLAR 65 Query: 107 KEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E +A A L+ LD + S L++VLD V DPHN+GA LR A A + Sbjct: 66 TERHQGVVARAGDLPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + + +A AK ASGA + +PYI ++NL AL+++ G +G + ++ K L + Sbjct: 126 IAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWIVGTAGEATKSLYE 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +A+++GAEG+G+R T++T + + M G +++LNVS A+ V L+ + Sbjct: 186 TELDGPVAIVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRS 244 >gi|299769111|ref|YP_003731137.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1] gi|298699199|gb|ADI89764.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1] Length = 258 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 96/257 (37%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K ++ + + + + L G H L +KIF L T+ AL D Sbjct: 8 SKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLTWLQQ-QKKIFSLFTTEQALEHTDL 66 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + V + + + + + + + L++ +++ D Sbjct: 67 KKIIELHQGHIFVISEVLYRDLSTLGTSLPCLAIIDLPKTASTIDYKVDTLIL--ENIQD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LRSA A + II T+ + S + ++ GA + LTD L K Sbjct: 125 PGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLHCFENFQLTDILPKFP 184 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F T S S + + ILG EG+G + A + PG ++L Sbjct: 185 IPVFVTSSHRSTSLYSKD---LSKPCVWILGNEGQGASDYALDHA-ESVTIPQPGGQESL 240 Query: 264 NVSNAAAVALYITQNHF 280 NV+ A ++ + Sbjct: 241 NVAIAGSICFFEMVRQR 257 >gi|72160617|ref|YP_288274.1| RNA methyltransferase TrmH, group 3 [Thermobifida fusca YX] gi|71914349|gb|AAZ54251.1| RNA methyltransferase TrmH, group 3 [Thermobifida fusca YX] Length = 324 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 72/290 (24%), Positives = 125/290 (43%), Gaps = 21/290 (7%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 + ++I + + + Y R+ ++ + ++ + L G + V AL Sbjct: 38 AEKQRIKAAERAQYLATRK-----VRVVEELPGATVRARDGSELLIGRNPVVEALRAKVP 92 Query: 67 KIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV----HQGLALETA 119 + LL + + V +D+ + + HQGL L+ Sbjct: 93 AVRLLLSNSLDPDERITEAARLAGQQGIAIAEVARPELDRRCERLGLPKAAHQGLILQVE 152 Query: 120 PLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 P T D + L++ LD V DPHN+GAI RSA AF G++ +R + Sbjct: 153 PYEYATADDLLAEARKGETTPLIVALDGVTDPHNLGAIARSAAAFGAHGLLVPERRAAGV 212 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIAL 231 + K+++G L IP ++ NLT L++ GF GL +D P + E+ + + Sbjct: 213 TTAAWKASAGTLARIPVAQVVNLTRTLKQFQEAGFFVSGLDADGDTPLDQWELATEPSVV 272 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++G+EGKGL +ET + + + G +++LN S AA VALY Sbjct: 273 VVGSEGKGLSRLVRETCDVVVSIPIHG-VESLNASVAAGVALYEAVRRRT 321 >gi|258509319|ref|YP_003172070.1| RNA methyltransferase [Lactobacillus rhamnosus GG] gi|257149246|emb|CAR88219.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus rhamnosus GG] gi|259650600|dbj|BAI42762.1| rRNA methylase [Lactobacillus rhamnosus GG] Length = 260 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 67/239 (28%), Positives = 113/239 (47%), Gaps = 13/239 (5%) Query: 49 LFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104 F++G H V AAL + I +L + + V T P Q +D + Sbjct: 16 EFVFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVATAPKQKLDLM 75 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+ L P TLD + ++LD++ DPHN+G+ILR+A A Sbjct: 76 SDH-GNHQGVLLAMTPYAYATLDDLFKHAADKGEDPFFLLLDNLEDPHNLGSILRTADAS 134 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII K + ++ +AK ++GA+E++P R++NL ++ + G G + D + Sbjct: 135 GVHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKILKDRGMWIFGTAMDGQ 194 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + K AL++G EGKG+ P + + + M G +++LN S AA + +Y Sbjct: 195 DYRQWDAK-GSTALVIGNEGKGISPGIAKLMDATIAIPMAGHVQSLNASVAAGILMYQA 252 >gi|75676251|ref|YP_318672.1| RNA methyltransferase TrmH, group 3 [Nitrobacter winogradskyi Nb-255] gi|74421121|gb|ABA05320.1| RNA methyltransferase TrmH, group 3 [Nitrobacter winogradskyi Nb-255] Length = 283 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 119/269 (44%), Positives = 166/269 (61%), Gaps = 11/269 (4%) Query: 16 KDSHYAKLRRNHRDY----------KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65 ++ + + R D + + +K+R TS LYG HTV+AAL NP Sbjct: 6 REPRFRRASRPRSDIHTKEAGGRNHQPKRGSARKARETSPDGPAVLYGWHTVTAALANPR 65 Query: 66 RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 R+I +LL T+NA RL + N+ P + V P ID+ +G +AVHQGL E PL SP Sbjct: 66 RRIRKLLVTENAARRLTHE-NIDTPITPEIVRPSAIDQRLGPDAVHQGLLAEADPLPSPD 124 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 ++ + +++VLD + DPHN+GAI+RSA AFS I+TT R+SP + VLAKSASGALE Sbjct: 125 IETLTQEGIVLVLDQITDPHNVGAIMRSAAAFSVKAIVTTARHSPEATGVLAKSASGALE 184 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +P + + NL AL ++ GF T+GL S + L + +AL+LGAEGKGLR T+ Sbjct: 185 IVPLVLVQNLARALAGLNDRGFMTVGLDSAGSENLAAVPLREPLALVLGAEGKGLRQLTR 244 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 +T +++A L MPG IK+LNVSNAA +ALY Sbjct: 245 DTCSAVARLDMPGHIKSLNVSNAAVLALY 273 >gi|183603699|ref|ZP_02718929.2| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CDC3059-06] gi|221232698|ref|YP_002511852.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae ATCC 700669] gi|237650991|ref|ZP_04525243.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CCRI 1974] gi|298230170|ref|ZP_06963851.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254776|ref|ZP_06978362.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503744|ref|YP_003725684.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|183575321|gb|EDT95849.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CDC3059-06] gi|220675160|emb|CAR69744.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae ATCC 700669] gi|298239339|gb|ADI70470.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A] Length = 246 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 102/276 (36%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLRQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L + V + + + QG+ Sbjct: 40 VQAGVT-IEKIFALENYRDQLATFSQT------VWVSEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+++ + S + + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245 >gi|166365581|ref|YP_001657854.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] gi|166087954|dbj|BAG02662.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] Length = 288 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 68/278 (24%), Positives = 130/278 (46%), Gaps = 21/278 (7%) Query: 22 KLRRNHRDYKKMQS------FNQKSR--HTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 + + ++ ++++ + +Q + LYG V A+ R++ ++ Sbjct: 7 RGKSDNSNFRRPSRPKTGPILAKSPAVTPENQEADDLLYGRRVVLTAMEE-ERQLNRIWV 65 Query: 74 ----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL--- 126 + + + + V +D+I +A HQG+A + +P L Sbjct: 66 VNRLRYDPRYHTLLEKAKANGTVIDEVDDLRLDQITS-KANHQGIAAQMSPYEYIELADL 124 Query: 127 ----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 ++++ + + DPHN+GAI+R+A A C G++ +R + ++ + K A+G Sbjct: 125 IEKAKGKSRHPVIVIAEGITDPHNLGAIIRTAEAMGCQGVVIPQRRAAGVTSTVMKVAAG 184 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ALE++P R+ NL AL+++ + GF G ++ S K L I L+LG+EG+GL Sbjct: 185 ALEYLPVARVVNLNRALEELKAAGFWLYGAAAKSGKSLHTINLTGAIGLVLGSEGEGLSL 244 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 TQ++ + + + G +LN S AAA+ALY Sbjct: 245 LTQKSCDELVSIPLAGKTPSLNASVAAAMALYEVYRQR 282 >gi|306836882|ref|ZP_07469838.1| RNA methyltransferase [Corynebacterium accolens ATCC 49726] gi|304567254|gb|EFM42863.1| RNA methyltransferase [Corynebacterium accolens ATCC 49726] Length = 316 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 68/288 (23%), Positives = 123/288 (42%), Gaps = 26/288 (9%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ K H AKL R R RH + + + G + V L+ Sbjct: 38 TPKAEDRVYHAK--HKAKLERERR---------NSGRHQKETAEMVV-GRNPVIECLHA- 84 Query: 65 SRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + P+ V +D++ G +HQG+ L+ P Sbjct: 85 KVPATTLYIAAGTRNDKRLSEAVSMCNTRNIPIIEVQRHEMDRMTG-NGMHQGIGLQIPP 143 Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 ++ + ++LD++ DP N+GA++RS AF DG+I +R S S + Sbjct: 144 YKYAAVEDLIANAAENPRPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVT 203 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALI 232 AV ++++G +P R +N+T +++ G+Q +GL + E D + ++ Sbjct: 204 AVAWRTSAGTAARLPVARATNITRTVKEFQKNGYQVVGLDAGGDHTLDTYEGGTDPVVIV 263 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +G+EGKG+ ET + + M G +++LN S AA L Sbjct: 264 IGSEGKGISRLVSETCDVLMSIPMTGWVESLNASVAAGSVLSEFARQR 311 >gi|227502089|ref|ZP_03932138.1| possible tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC 49725] gi|227077148|gb|EEI15111.1| possible tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC 49725] Length = 316 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 68/288 (23%), Positives = 123/288 (42%), Gaps = 26/288 (9%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ K H AKL R R RH + + + G + V L+ Sbjct: 38 TPKAEDRVYHAK--HKAKLERERR---------NSGRHQKETAEMVV-GRNPVIECLHA- 84 Query: 65 SRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + P+ V +D++ G +HQG+ L+ P Sbjct: 85 KVPATTLYIAAGTRNDKRLSEAVSMCNTRNIPIIEVQRHEMDRMTG-NGMHQGIGLQIPP 143 Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 ++ + ++LD++ DP N+GA++RS AF DG+I +R S S + Sbjct: 144 YKYAAVEDLIANAAENPRPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVT 203 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALI 232 AV ++++G +P R +N+T +++ G+Q +GL + E D + ++ Sbjct: 204 AVAWRTSAGTAARLPVARATNITRTVKEFQKNGYQVVGLDAGGDHTLDTYEGGTDPVVIV 263 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +G+EGKG+ ET + + M G +++LN S AA L Sbjct: 264 IGSEGKGISRLVSETCDVLMSIPMTGWVESLNASVAAGSVLSEFARQR 311 >gi|254464985|ref|ZP_05078396.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales bacterium Y4I] gi|206685893|gb|EDZ46375.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales bacterium Y4I] Length = 258 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 146/245 (59%), Gaps = 7/245 (2%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++S+ + E ++L+G+H V AL NP R+ +L+ T+NA +L DA + + Sbjct: 11 KEQSKRAAAAETVWLFGLHAVRDALLNPKREKLRLMVTQNAQVKLA-DAIAESGIEAEVI 69 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTL---DAVRNSQLLMVLDHVNDPHNIGAILRS 153 P+ + + ++VHQG ALE PL L R + +++LD V DPHN+GAILRS Sbjct: 70 DPRKFNPPIDAQSVHQGAALEVKPLNWGGLAENCIGREAPRVLLLDRVTDPHNVGAILRS 129 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A +I T+ +S E+ LAK+ASGALE PY+R+ NL D + ++ + GF +GL Sbjct: 130 AEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADTITELQNMGFIVLGLD 189 Query: 214 SDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++++ +E ++ +AL+LGAEG GLR KT+ET ++ + G +LNVSNAAA Sbjct: 190 GEAEQTIETALEGKQHLPVALVLGAEGPGLRQKTKETVDALVKIGAAGGFGSLNVSNAAA 249 Query: 271 VALYI 275 +ALY Sbjct: 250 IALYA 254 >gi|326388507|ref|ZP_08210101.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM 19370] gi|326206972|gb|EGD57795.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM 19370] Length = 279 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 92/254 (36%), Gaps = 5/254 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K ++S K +H + E G+ ++ A L+A+ L D Sbjct: 22 SNPTIKFVRSLRDK-KHRRREERFLAEGLRLLTDAREGGRLPEILLMASGRDEHPLLSDL 80 Query: 86 NLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 V VP + K+ GK+ + + + + + +V+ + Sbjct: 81 EQAVVESGGDVIEVPTDILAKVTGKDNPQAVAGVYAEWDTGLSTIDRKAAPIWLVVQAMR 140 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G +LR+A A G+I + S +++ GA+ + + + + Sbjct: 141 DPGNLGTMLRTADAVGAGGLILLDDCADPFSVEAVRASMGAIFTQRLAQARWA-EFQEWL 199 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 Q + S +P +++G E +GL + + + M G + Sbjct: 200 RQGEGQLVAASLRDAQPYRGAPYAAPCFVMVGNESRGLPEEYEMACDLRVTMPMKGRADS 259 Query: 263 LNVSNAAAVALYIT 276 LN + A AV Y Sbjct: 260 LNAAVAGAVLAYEV 273 >gi|326391472|ref|ZP_08213007.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus JW 200] gi|325992498|gb|EGD50955.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus JW 200] Length = 254 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 89/238 (37%), Gaps = 11/238 (4%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + F+ G +V AL + + + ++P + I Sbjct: 23 RYEEGLFFVEGTTSVLEALKSDFEIEYIV-------MGEGVKIDIPKGDFEIAHTTERIF 75 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 K + Q + ++ + ++ D++ DP N+G I+R+A AF I Sbjct: 76 KKLSDTVTPQMVMAIIKIPKYEENTYIKEKGVYVIADNIQDPGNLGTIIRTADAFGVSAI 135 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 T + + +++ G++ HIP I ++ K L + Sbjct: 136 FTINNCVDIFNPKVLRASMGSIFHIPVIATTSQILLKLKRRGIKVFATHLKAQKLVHECN 195 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +DKIA +LG E KG+ + + M G ++LNVS AA++ LY +Q Sbjct: 196 I--SDKIAFVLGNEAKGVS--VVDLVDDFVKIPMTGEAESLNVSIAASIFLYESQRQR 249 >gi|298207714|ref|YP_003715893.1| putative tRNA:rRNA methyltransferase [Croceibacter atlanticus HTCC2559] gi|83850351|gb|EAP88219.1| putative tRNA:rRNA methyltransferase [Croceibacter atlanticus HTCC2559] Length = 245 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 103/239 (43%), Gaps = 10/239 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG+ + A+ K++ + L + VP I+K+ K Sbjct: 7 IYGLRAIIEAIEAGKDIEKVYLQKELEGDLFKELESLIKSKRISSSYVPEIKIEKLS-KG 65 Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG + AP+ + N + ++LD ++D N GAI+R+A Sbjct: 66 RNHQGAVAKVAPISFQDFEITINRIIKDIESPIFLMLDQISDTRNFGAIVRTAECTGVSA 125 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II +K S +A K+++GA+ +IP ++ ++ DA+ + S + + + + + Sbjct: 126 IIISKTGSAPITADAVKTSAGAIFNIPICKVDHIKDAIYYLQSCDVKIVAATEKTDNTIY 185 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ALI+G+EG+G+ P + A L + G I++LNVS A LY Sbjct: 186 DVPLTGSHALIMGSEGRGINPSVLKIVDYKAKLPLLGKIESLNVSVATGAFLYEAIRQR 244 >gi|126662270|ref|ZP_01733269.1| putative tRNA:rRNA methyltransferase [Flavobacteria bacterium BAL38] gi|126625649|gb|EAZ96338.1| putative tRNA:rRNA methyltransferase [Flavobacteria bacterium BAL38] Length = 244 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 114/240 (47%), Gaps = 13/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107 ++G+ + A+ N ++I ++ K+A L D + VP + ++++ Sbjct: 7 IFGIRAIIEAI-NAKKEIDKVFVQKDAQGDLMQDLMKTMKRNNINFSYVPVEKLNRLT-- 63 Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG AP+ +L+ L ++LD ++D N GAI+R+A D Sbjct: 64 PNNHQGAVATIAPISFVSLETLVEGVIETGKKPLFLILDQLSDARNFGAIIRTAECTGVD 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K+ S + K+++GA+ ++P ++ ++ DA+ + G +T+ + ++ + Sbjct: 124 GIIIQKQGSAPVNGDTVKTSAGAVFNVPICKVDHIKDAIFYLQGSGIKTVAATEKTENHI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 N+ +A+I+G+E +G+ P + A L M G I++LNVS A LY Sbjct: 184 YDINFNEGVAIIMGSEDRGVNPSVLKIVDEKAKLPMFGTIESLNVSVACGAFLYEALRQR 243 >gi|256374514|ref|YP_003098174.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum DSM 43827] gi|255918817|gb|ACU34328.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum DSM 43827] Length = 321 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 63/278 (22%), Positives = 108/278 (38%), Gaps = 18/278 (6%) Query: 20 YAKLRRNHRDYKKMQS------FNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQL 71 A+ R NH Y+K + Q+ R + + G + V L + ++ Sbjct: 40 KAQDRPNHPAYRKANAAAKANAVRQQRRKAADAAPETVAGRNPVVECLRAGIPATALYVA 99 Query: 72 L-ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL---- 126 L + V V +D+I G A+HQGL L+ P Sbjct: 100 LGIDADDRVAEAVQLAASRGISVLEVQRGELDRITG-GAMHQGLGLQVPPYEYAEPRDLL 158 Query: 127 ---DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 LL+ LD V DP N+GA++RSA AF G++ +R S S +AV ++++G Sbjct: 159 RAAKESGRPPLLVALDGVTDPRNLGAVVRSAAAFGAHGVVLPQRRSASMTAVAWRTSAGT 218 Query: 184 LEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 +P +N + + + ++ + +++G+EG+GL Sbjct: 219 AARLPIAVATNLTRQLREWAEAGLMVIGLDADGDVDVDGLDLATGPLVVVVGSEGRGLSR 278 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ET + M +++LN S AA V L Sbjct: 279 LVRETCDQTVSIPMASNVESLNASVAAGVVLAEVARRR 316 >gi|257867720|ref|ZP_05647373.1| RNA methyltransferase [Enterococcus casseliflavus EC30] gi|257874047|ref|ZP_05653700.1| RNA methyltransferase [Enterococcus casseliflavus EC10] gi|257876625|ref|ZP_05656278.1| RNA methyltransferase [Enterococcus casseliflavus EC20] gi|257801803|gb|EEV30706.1| RNA methyltransferase [Enterococcus casseliflavus EC30] gi|257808211|gb|EEV37033.1| RNA methyltransferase [Enterococcus casseliflavus EC10] gi|257810791|gb|EEV39611.1| RNA methyltransferase [Enterococcus casseliflavus EC20] Length = 259 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 55/274 (20%), Positives = 102/274 (37%), Gaps = 25/274 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I KK+ I +K + +H +Q + + G H V A Sbjct: 7 MKEIQSKKNTFIKEIKKL-------------------TQKKHRTQTNSYLIDGWHLVQEA 47 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+ I LL T L+ + + + + I ++ QG+ Sbjct: 48 LHA-QVPIKALLVTPRGLSEANGQLDDYQ--EESYLITEEIAAMLSDLPTPQGIFAVV-- 102 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + ++LD+V DP N+G ++R+A A G+ + + S + +S Sbjct: 103 -EKQEQDLQTLTGNWLILDNVQDPGNVGTMIRTADAAGFSGVFLGEGTADLYSTKVLRSM 161 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P + + Q + + P + K A ILG EG+G+ Sbjct: 162 QGSNYHLPIVEGAIPPFLKQLQAAGVAIYGTELNKEAVPYTELPKGQAAAFILGNEGQGV 221 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ + G ++LNV+ AA + +Y Sbjct: 222 NQELLALTDKNLYIPIYGQAESLNVAIAAGILMY 255 >gi|225857547|ref|YP_002739058.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae P1031] gi|225724882|gb|ACO20734.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae P1031] Length = 246 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 102/276 (36%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLRQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L + V + + + QG+ Sbjct: 40 VQAGVT-IEKIFALENYRDQLATFSQT------VWVSEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+++ + S + + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRMTSPALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245 >gi|78044128|ref|YP_361140.1| RNA methyltransferase [Carboxydothermus hydrogenoformans Z-2901] gi|77996243|gb|ABB15142.1| RNA methyltransferase, TrmH family, group 3 [Carboxydothermus hydrogenoformans Z-2901] Length = 237 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 2/232 (0%) Query: 51 LYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGV+ V AL K++ TK+ R + PV VP + + Sbjct: 4 IYGVNPVREALMKGIVNKLYLSRETKDKNIRELLLLARENKVPVVEVPREKLHAKSQGVE 63 Query: 110 VHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 + + ++VL+H+ DP N+GAILRSA AF G+I KR Sbjct: 64 ADISPVKYVEIDDILAIAERKAEPLFILVLNHLEDPQNLGAILRSAEAFGVHGVIIPKRR 123 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + + +AK+++GA +P R +N+ + L+ + G +G + SK L Sbjct: 124 AVQVTGAVAKASAGAYLKVPVARCTNVAETLRYLKEKGAWVVGADAKSKASLWDTDFKLP 183 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +AL++G E GL + M G I +LN S AAA+ + Sbjct: 184 LALVIGGENVGLTSHILRECDFTVSIPMVGTINSLNASVAAALLMAEVVRQR 235 >gi|257784982|ref|YP_003180199.1| RNA methyltransferase, TrmH family, group 3 [Atopobium parvulum DSM 20469] gi|257473489|gb|ACV51608.1| RNA methyltransferase, TrmH family, group 3 [Atopobium parvulum DSM 20469] Length = 338 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 107/246 (43%), Gaps = 12/246 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-----PFPVKTVPP 98 +P + G V+ AL + L + + L PV+ V Sbjct: 91 KKPATDLIEGRRAVAEALTVGI-PLKNALVQAASGQKDQEIEALARQLEQEGIPVERVAR 149 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRS 153 +D + A HQG+ + T P L + + L++VLDHV D N GAI+RS Sbjct: 150 PVLDSLSSHGA-HQGVIVRTQPFAYADLSEIIQRAGSANALVVVLDHVTDEGNFGAIVRS 208 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A G++ + K+++GA+ H+P ++SNL AL+++ + GF T G + Sbjct: 209 AEVVGAAGVVIANARAARVGVGAYKTSAGAVLHLPIAQVSNLPRALEELKAAGFWTCGST 268 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + + ++AL++G+EG G+ E L G +++LNV+ A V Sbjct: 269 EHATQSVWEAPMGGRLALVMGSEGSGISRLMLEKCDFTCKLPQFGQVESLNVAQATTVMC 328 Query: 274 YITQNH 279 Y Sbjct: 329 YEWLRR 334 >gi|259503594|ref|ZP_05746496.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] gi|259168418|gb|EEW52913.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] Length = 257 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 94/253 (37%), Gaps = 6/253 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ K + K + Q L G H V+ A+ + QL+ T + L Sbjct: 8 HNQHVKNWKKLQTK-KFRRQRGEYLLDGWHLVNEAVKAGI-LLRQLIGTADQLTAHRELV 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + V P+ + I A+ P ++ + LL+ D V DP Sbjct: 66 DRAA--EAYVVTPEIMQHITETVTPQGIAAIVDLPDAHRVPANIQGAWLLL--DRVQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ++R+A A G++ R + + +S G+ H+ + Sbjct: 122 NVGTMVRTADAAGFAGVVVGNRSADLFGPKVVRSMQGSQFHLTLLEGDLHKWVQDFKRIG 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + + + ALI+G EG+G+ T+ ++ M G ++LNV Sbjct: 182 APVYGTQLNPAAQNFRKVHPGPTFALIMGNEGQGMAADLLAETTTNLYIPMRGDAESLNV 241 Query: 266 SNAAAVALYITQN 278 + +A + ++ Sbjct: 242 AVSAGILMFQLNQ 254 >gi|325567613|ref|ZP_08144280.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus casseliflavus ATCC 12755] gi|325159046|gb|EGC71192.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus casseliflavus ATCC 12755] Length = 279 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 75/271 (27%), Positives = 126/271 (46%), Gaps = 13/271 (4%) Query: 22 KLRRNHRDYKKMQSFNQKSRHTSQP------ENLFLYGVHTVSAALNNPS-RKIFQLLAT 74 + R N + + ++ + + E+ F++G H V+ AL K+F Sbjct: 7 RKRPNKKTAGQSEARKENRPDRRKEAEGEAIEDNFVFGYHAVAEALKEGRGNKLFLSEEA 66 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----AVR 130 + + PVK VP Q +D + + VHQG+ L P TLD + Sbjct: 67 RGEKIDRLKEMAREQAVPVKWVPKQKLDTMSD-QGVHQGMILAITPYQYLTLDELLAQTK 125 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 L ++LD++ DPHN G+I+R+A A DGII K + + ++ K+++GA+EHIP Sbjct: 126 EQPLYLILDNLEDPHNFGSIMRTADASGVDGIIIPKHRAVGITPIVVKTSTGAVEHIPVA 185 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R++NLT A+Q++ GF G + LI+G EG+G+ ++ Sbjct: 186 RVTNLTQAVQQLKKAGFWIFGTDMSGSDYRTWN-AQGAVGLIIGNEGRGMGEGLKKEVDQ 244 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 M + M G +++LN S AA + +Y Sbjct: 245 MLTIPMTGHVQSLNASVAAGLLMYQAFTSRN 275 >gi|124006094|ref|ZP_01690930.1| RNA methyltransferase, TrmH family, group 3 [Microscilla marina ATCC 23134] gi|123988271|gb|EAY27924.1| RNA methyltransferase, TrmH family, group 3 [Microscilla marina ATCC 23134] Length = 246 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 103/244 (42%), Gaps = 15/244 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQTIDKI 104 F++GV +V+ +N I +L + + PV VP +++I Sbjct: 5 FVFGVQSVTETINAGK-PIDKLFIQRELGRNSPKVAYILEEAKKREVPVAKVPLDKLNRI 63 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+ + + L + L+++LD + D N GAI R+A Sbjct: 64 T--RKNHQGIIAFISAVHYQPLSNIIPQLYEEGKTPLVLILDRLTDVRNFGAIARTAECA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 I+ R S S+ K++SGAL ++P R +NL ++ + G Q + + + Sbjct: 122 GIHAIVIPSRGSAQVSSDAMKTSSGALNYLPVCREANLEKTIEFLQESGLQIVACTEKTS 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + A+++G+E G+ A +A + + G I +LNVS A AV +Y Sbjct: 182 ETIYAPDYTVPTAIVMGSEEDGISQALIRKADHLAKIPLQGEIGSLNVSVATAVIVYEAV 241 Query: 278 NHFA 281 + Sbjct: 242 RQRS 245 >gi|149914472|ref|ZP_01903003.1| tRNA/rRNA metyltransferase [Roseobacter sp. AzwK-3b] gi|149811991|gb|EDM71824.1| tRNA/rRNA metyltransferase [Roseobacter sp. AzwK-3b] Length = 275 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 91/240 (37%), Positives = 140/240 (58%), Gaps = 10/240 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++L+G+H V AL NP+R +L+ T+NA RL + + P+ + Sbjct: 37 TVWLFGLHAVRDALMNPARVKLRLIVTRNAADRLGEAIAV-GGLEPEIADPRRFTAPLDP 95 Query: 108 EAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++VHQG ALE PL L+ +++LD V+DPHN+GAILRSA F Sbjct: 96 QSVHQGAALEVKPLDWGPLEGVCASAPGELPPRVLLLDRVSDPHNVGAILRSAEVFGACA 155 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I R+S E+ LAK+ASGALE PY+R++NL A++ + G+ +GL+ ++++ +E Sbjct: 156 VIAPHRHSAPETGALAKTASGALERQPYLRVTNLGRAIEALQGMGYVVLGLAGEAERTIE 215 Query: 222 QE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ +AL+LGAEG GLR KT+ET + + G +LNVSNAAAVALY ++ Sbjct: 216 EALEGRRSGPVALVLGAEGPGLREKTRETCDELVRIAFSGDFGSLNVSNAAAVALYASRR 275 >gi|260550512|ref|ZP_05824722.1| rRNA methylase [Acinetobacter sp. RUH2624] gi|260406427|gb|EEW99909.1| rRNA methylase [Acinetobacter sp. RUH2624] Length = 249 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 12/242 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 YGVH+V + L ++ L K RL L V+ ++++K+ G Sbjct: 8 YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRESLEKLAGLP 67 Query: 109 AVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ P + LL+ LD V DPHN+GA +R+A A + Sbjct: 68 -FHQGVVAAVRPYPTLNEKDLDQILAETPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPL 220 I + S S + K A+G E + +I+++NL K + + +S P+ Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDESALPI 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + + +++GAE GLRP TQ ++ M G +++LNVS A +ALY Sbjct: 187 QKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246 Query: 281 AK 282 ++ Sbjct: 247 SE 248 >gi|167562889|ref|ZP_02355805.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia oklahomensis EO147] gi|167570076|ref|ZP_02362950.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia oklahomensis C6786] Length = 247 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 114/239 (47%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + ++ + R D + + + Sbjct: 6 VLYGFHAVTARMRHDASTVAEVFYDQTRRDRRMQDFLHTAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ L+ LD + LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDLPLAQNLAELLDGISGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + + +A AK ASGA + +PYI ++NL AL+++ G IG S D+ L Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMVGSVESLNVSVASGVCLYEAVRQR 243 >gi|322375834|ref|ZP_08050345.1| SpoU rRNA Methylase family protein [Streptococcus sp. C300] gi|321279102|gb|EFX56144.1| SpoU rRNA Methylase family protein [Streptococcus sp. C300] Length = 252 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 105/274 (38%), Gaps = 31/274 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 7 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 45 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A ++ +L P V + + + + QG+ Sbjct: 46 VQAGVT-IEKVFALESYRDQL---VAFPQTI---WVSEEILLDLADTQ-TPQGIVAVIQK 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G ++R+A A G+I + + + S +S Sbjct: 98 EEVGLPDLHQGKYLFL--EDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+ ++ + S S K + + L++G EG+G+ Sbjct: 156 QGSHFHLPIYRMPLVSFVEEAKKSNLPILATTLSRESKDYRELSSLENFVLVMGNEGQGI 215 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E+A + H+ M G ++LNV+ AA + ++ Sbjct: 216 SSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 249 >gi|206900244|ref|YP_002251183.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus thermophilum H-6-12] gi|206739347|gb|ACI18405.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus thermophilum H-6-12] Length = 241 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 115/234 (49%), Gaps = 9/234 (3%) Query: 51 LYGVHTVSAALNN--PSRKIFQLL-ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG + V AL + P KI+ + + P+K V I+K+VG Sbjct: 5 IYGKNAVLEALKSNIPLNKIYIAKGIHFDNKFNEILNLAKEKGVPIKYVERSVIEKMVG- 63 Query: 108 EAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 QG+ + + + + N +++VLDH+ DPHN+GAI R++ I+ Sbjct: 64 -GNSQGVLAIISSVPYREWEDIEKTLNNKSVIVVLDHIQDPHNLGAIARTSEFAGASAIV 122 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K S ++ K+++GAL +IP +R+SN+ + L+++ G+ +G D++ Q Sbjct: 123 IPKARSAGVTSASFKASAGALSYIPVVRVSNIANFLRELKKKGWFIVGADLDTENLYNQV 182 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL++G+E +GL +E+ + + G +++LNVS A + LY + Sbjct: 183 NYRFPLALVVGSEDEGLHRIVKESCDLLVKIPSYGKVESLNVSVALGIILYKIR 236 >gi|217077820|ref|YP_002335538.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho africanus TCF52B] gi|217037675|gb|ACJ76197.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho africanus TCF52B] Length = 238 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 7/233 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 +YG + + L K+ + + A L P + + ++ E Sbjct: 3 VYGRNILKEILETN-TKVRMIYFSDTNSAELTELIEEVKKRRLPFTIANKKVLQRLSNTE 61 Query: 109 AVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 HQG+ ++ + L++LD + DPHN GAI+R+AVA D II K Sbjct: 62 K-HQGVVVDIGEFEYKDESIIESLEKPFLVILDQLQDPHNFGAIIRTAVASGADAIIIPK 120 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 S + + K + G + I I+ N+ ++ + G + + + K + Sbjct: 121 NNSVQVTPTVVKVSVGTIFKINIIKTINIARFIKNIKEMGIW-VYGADTNGKVYYKTDLR 179 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 IA++LG EG G+RP +E ++ + M +++LNVS +A + LY Sbjct: 180 KPIAIVLGNEGAGIRPNVKEKCDALITIPMKNSVESLNVSVSAGILLYEVMRQ 232 >gi|52783332|sp|Q9RED7|RLMB_BURSP RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|6687040|emb|CAB64790.1| YjfH protein [Burkholderia sp.] Length = 247 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 113/240 (47%), Gaps = 7/240 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H ++A L + ++ ++A R + ++ + G Sbjct: 6 LLHGFHAITARLRAFPATVNEVWYDPARQDARMRAFLHLAASANARLIAADASRLNALSG 65 Query: 107 KEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 ++ +A T L LD + LL+ LD V DPHN+GA LR A + Sbjct: 66 EKRHQGVVARVTEATRAHSLETLLDTIEGQPLLLALDGVTDPHNLGACLRVADGAGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I +R + +A AK+A+GA E +PY+ + NL AL+ + + G Q IG + D+ L Sbjct: 126 IAPRRRAAGLTAAAAKAANGAAETVPYLTVINLARALRALKNAGIQVIGTADDATTSLFD 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + +AL++GAEG G+R T+E + + + G +++LNVS A+ + L+ K Sbjct: 186 IQLDGALALVMGAEGAGMRRLTREACDEVVRIPLAGHVQSLNVSVASGICLFEAVRQRLK 245 >gi|291167104|gb|EFE29150.1| RNA methyltransferase, TrmH family, group 3 [Filifactor alocis ATCC 35896] Length = 242 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 100/239 (41%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V AL P I+ +K R +K ++++ + Sbjct: 3 IEGRNAVLEALKKEIPLDVIYVSKDSKEGSIRKIISMAKEKKIILKQTDRMKLEQMT-ET 61 Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ T T++ + L++LD + DPHN+GA++RSA DG Sbjct: 62 AAHQGVIALTMDYAYSTVEEILASVKMQNKTGFLLILDEIEDPHNLGALIRSAEGAGVDG 121 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I KR S + +A + K+++GA+ + + ++ + Sbjct: 122 VILPKRRSATVNATVEKTSAGAVSY-MKVARVTNISQTIELLKKENYWVYGLDMDGTEYT 180 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q + IA+++G EGKG+ ++ + + M G I++LN S A +V L+ Sbjct: 181 QNDWSGNIAIVVGNEGKGMGRLVRQHCDKILSIPMKGQIQSLNASVAGSVILFEASKQR 239 >gi|163839175|ref|YP_001623580.1| 23S rRNA methyltransferase TrmH, group 3 [Renibacterium salmoninarum ATCC 33209] gi|162952651|gb|ABY22166.1| 23S rRNA methyltransferase TrmH, group 3 [Renibacterium salmoninarum ATCC 33209] Length = 336 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 64/261 (24%), Positives = 114/261 (43%), Gaps = 18/261 (6%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQLLATKNALARLDWDANLPHPFPVK 94 Q+++ +P + G ++V AL + + + P+ Sbjct: 66 QRTQRRGRPSEEMVTGRNSVVEALRAGIPAKALYIAVRIEVDDRVKEVLKLASERGIPLM 125 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------------AVRNSQLLMVLDHV 141 +D++ +AVHQGLAL+ P P ++NS L++ LD + Sbjct: 126 ETHKPELDRMTD-DAVHQGLALQIPPYDYPDAIDIAQETVDKFKKGYIKNSPLIVALDGI 184 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+GAI+RS AF+ +I +R S +A K+++GA +P R NL AL+ Sbjct: 185 TDPRNLGAIIRSVSAFAGQAVIVPERRSVGLTASAWKTSAGAAVRVPVARAGNLNRALES 244 Query: 202 MHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 G+ +GL D L + + + +++G+EGKGL +E + + + + Sbjct: 245 FKGMGYFVLGLDGDGDVSLPALAVAKEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAM 304 Query: 261 KALNVSNAAAVALYITQNHFA 281 ++LN S A + LY + Sbjct: 305 ESLNASMAVGITLYEIARQRS 325 >gi|288818710|ref|YP_003433058.1| rRNA methylase [Hydrogenobacter thermophilus TK-6] gi|288788110|dbj|BAI69857.1| rRNA methylase [Hydrogenobacter thermophilus TK-6] gi|308752297|gb|ADO45780.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobacter thermophilus TK-6] Length = 240 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 97/233 (41%), Gaps = 5/233 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + V AL + L+A + ++ VP I+++ G + Sbjct: 2 IVYGKNPVIEALRSGKDIEKVLVAHDSHPPYQVAKLCKERGVKIQKVPRAKIEELAGTKK 61 Query: 110 VH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 + DA++ + ++VLDH+ DP N+G +LR+ G + Sbjct: 62 TQGILAIISPINYVSSNELFKDALKKNSFILVLDHLTDPQNVGNLLRTCEVLGGVGALLP 121 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 S + V+ K+++G++ H+ ++ +L K + K + Sbjct: 122 THRSSPINQVVVKASAGSVFHLKISKVPSL-SKALKDFKKQGGWVISVERGGKDIRYTSI 180 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 AL+LG+EG+G+ E + + + M G I +LNVS+A A+A++ Sbjct: 181 PLPCALVLGSEGEGVSKSLLEISDLVLSIPMVGKINSLNVSSAGAIAMWECVR 233 >gi|319760229|ref|YP_004124167.1| 23S rRNA methyltransferase [Candidatus Blochmannia vafer str. BVAF] gi|318038943|gb|ADV33493.1| 23S rRNA methyltransferase [Candidatus Blochmannia vafer str. BVAF] Length = 248 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 115/243 (47%), Gaps = 11/243 (4%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKI 104 + +YG+H V + L NPS + + K+ ++L++ N ++ + ++ Sbjct: 2 SELVYGIHAVQSILDKNPSNILRIYILDKSRNSKLEFLFNQGVILKIKIQEKTRRWLNIK 61 Query: 105 VGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 ++HQG+ E ++ + L++LD + DPHN+GA LRSA A Sbjct: 62 SS-GSLHQGIIAEVNKVMCLKESDLLQLIQCYNKVPFLLILDGITDPHNLGACLRSADAA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I + S S ++ + K +SG+ +H+ ++R++NL L+ + + +G S Sbjct: 121 GVHMVIAPRNRSASINSTVRKVSSGSADHVAFLRVTNLLRILKLLQKYDIWIVGTVEKSD 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + +AL++G+EG G+R T+E + + M G +LNVS A + L+ Sbjct: 181 REIFDAKLVGPLALVMGSEGYGMRRVTKENCNEIISIPMCGFTSSLNVSVATGICLFEAL 240 Query: 278 NHF 280 Sbjct: 241 RQR 243 >gi|89055292|ref|YP_510743.1| RNA methyltransferase TrmH, group 3 [Jannaschia sp. CCS1] gi|88864841|gb|ABD55718.1| RNA methyltransferase TrmH group 3 [Jannaschia sp. CCS1] Length = 260 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 91/250 (36%), Positives = 137/250 (54%), Gaps = 9/250 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++ + + E ++L+G+H V AL NP R++ +L+ + NA +L DA + Sbjct: 11 KERGKRAAAAETIWLFGLHAVRDALANPDRQVLRLVVSLNAQTKLA-DAIAARGLEAEIA 69 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAIL 151 P+ + +VHQG A+E PL ++++LD V+DPHN+GAIL Sbjct: 70 DPRKFPVPLDPGSVHQGAAVEVKPLDWGDWRALARGDGAERSVVVLLDRVSDPHNVGAIL 129 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F +I R+S E+ LAK+ASGALE +PY RI NL DA++ + + GF +G Sbjct: 130 RSAEVFGARAVIAPARHSAPETGALAKTASGALERMPYARIGNLGDAMEALKADGFWMVG 189 Query: 212 LSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 L+ + P++ + IAL+LGAEG GLR +T+ +A + +LNVSNA Sbjct: 190 LAEEGAAPIDAVAARHTDSNIALVLGAEGPGLRERTRGLCDELAKIPFARDFGSLNVSNA 249 Query: 269 AAVALYITQN 278 AAVALY Sbjct: 250 AAVALYALTK 259 >gi|121281880|gb|ABM53513.1| putative RNA methyltransferase TrmH [uncultured bacterium CBNPD1 BAC clone 67] Length = 319 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 109/282 (38%), Positives = 156/282 (55%), Gaps = 6/282 (2%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSR---HTSQPENLFLYGVHTVSAAL 61 + K + +K F K + + LYG+H+V A Sbjct: 6 KRPYHPLDRQPKPAREGSRMGEKPAFKDKSRFAPKPKAPKPRLPDDTDVLYGMHSVKEAF 65 Query: 62 NNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 NP R+ +++AT+NA+ RL D NLP + V P+ I +++ +AVHQGL +E Sbjct: 66 ANPRRRFRRIVATENAVQRLTEDGVNLP--LAPELVKPEAIGRLLTPDAVHQGLYVEAER 123 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L + ++++ LD V DPHN+GAILRSA AF G+I T R+SP + VLAK+A Sbjct: 124 LPLLPLGKLPRDRIILALDQVTDPHNVGAILRSAAAFDVGGVIVTHRHSPEITGVLAKAA 183 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALEH+P + NL AL + GF IGL S++ + + I L+LGAEG+GL Sbjct: 184 SGALEHVPMAGVQNLARALTTLKDEGFAVIGLDSEAPEKMGDLPLKLPIVLVLGAEGRGL 243 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 RP T+E + +A L +PG IK+LNVSNAAA++LY Q + Sbjct: 244 RPSTRELCSHLARLELPGAIKSLNVSNAAAISLYAVQQAITR 285 >gi|295394485|ref|ZP_06804708.1| RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294972664|gb|EFG48516.1| RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 306 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 71/288 (24%), Positives = 125/288 (43%), Gaps = 21/288 (7%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ ++ AK R R ++ Q + + + + G ++V AL Sbjct: 26 TPKAEDRVYH--KAYKAKQERLKRAAQQ-----QARKKKKEHGSNMVAGRNSVLEALREG 78 Query: 65 SRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + R +A P+ +D+I A+HQG+AL+ P Sbjct: 79 I-PATTLYVARRIDADERVRDIIEAASDRGIPMLEAGKPDLDRITD-GAIHQGVALQVPP 136 Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 D LL+ LD + DP N+GAI+RS AF G+I T+R + S + Sbjct: 137 YEYAHPDDLLSLARDRAEHPLLVALDGITDPRNLGAIVRSTAAFGGHGVIITERRAASMT 196 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232 A K+++GA IP ++ NL A+ + G +GL + L + + + L+ Sbjct: 197 AAAWKTSAGAASRIPVAQVVNLARAIDDLKKSGVFVLGLDMNGDVELPKLELAREPVCLV 256 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +G+EGKGL ++ + + + ++LN AA VALY Sbjct: 257 VGSEGKGLSRLVRDKCDQIVSIPISASTESLNAGVAAGVALYEVARTR 304 >gi|220917468|ref|YP_002492772.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter dehalogenans 2CP-1] gi|219955322|gb|ACL65706.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter dehalogenans 2CP-1] Length = 256 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 12/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +YGV+ V L + ++ + A V+ P +D++ Sbjct: 3 VVYGVNPVRELLRAGGGDVAEVWLAEGGTRGAAFAELERLGRGAGAKVRAAPRAKLDRLA 62 Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 G + HQG+ A L+ LL+VLD V DPHN+GAI+RSA A Sbjct: 63 GTDR-HQGVVAVVADFRYAELEDLLARAQAGGRPPLLVVLDGVEDPHNLGAIIRSAHALG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++ + + + +AK+++GA+E P R++N+ L+++ G ++ L++D ++ Sbjct: 122 SHGVVIPRDRAVGVTPAVAKASAGAVERCPVARVTNVAKTLERLKEAGIWSVALAADGER 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 PL + AL+LG+EG+G+RP + T A + M G + +L+VS +AAVALY Sbjct: 182 PLGEVDLKGPTALVLGSEGEGIRPLVRRTCDLSARIPMSGDLDSLSVSASAAVALYEAAR 241 Query: 279 HFA 281 A Sbjct: 242 QRA 244 >gi|284029009|ref|YP_003378940.1| RNA methyltransferase, TrmH family, group 3 [Kribbella flavida DSM 17836] gi|283808302|gb|ADB30141.1| RNA methyltransferase, TrmH family, group 3 [Kribbella flavida DSM 17836] Length = 320 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 73/262 (27%), Positives = 111/262 (42%), Gaps = 16/262 (6%) Query: 35 SFNQKSRHTSQPE--NLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLP 88 + P+ ++YG + V AL + + + R ++ Sbjct: 61 RSAGRRPARKDPDATVEWVYGRNPVVEALRAG-VPASAIYVAEGTERDPRLREALLLSVE 119 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHV 141 + VP Q +D++ VHQGLA++ P D L++ LD V Sbjct: 120 RGVALLEVPRQELDRLTS-NGVHQGLAIQIPPYEYAHPDDLLRAAYDADQVPLIVALDGV 178 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+GAI RSA AF G++ +R + S SA K+++GA IP R +NL AL+ Sbjct: 179 TDPRNLGAITRSAAAFGAHGVLVPERRAASVSASAWKTSAGAAARIPVARATNLNRALKS 238 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 G IGL D + L D I L++G+EGKGL +E + + M Sbjct: 239 YKDAGLFVIGLDMDGEVELPDLQAATDPIVLVVGSEGKGLARLVRENCDLIVSIPMTSAT 298 Query: 261 KALNVSNAAAVALYITQNHFAK 282 ++LN A VALY + Sbjct: 299 ESLNAGIATGVALYEISRRRTQ 320 >gi|229552882|ref|ZP_04441607.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|258540508|ref|YP_003175007.1| TrmH family group 3 RNA methyltransferase [Lactobacillus rhamnosus Lc 705] gi|229313751|gb|EEN79724.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|257152184|emb|CAR91156.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus rhamnosus Lc 705] Length = 260 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 67/239 (28%), Positives = 113/239 (47%), Gaps = 13/239 (5%) Query: 49 LFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104 F++G H V AAL + I +L + + V T P Q +D + Sbjct: 16 EFVFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVATAPKQKLDLM 75 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+ L P TLD + ++LD++ DPHN+G+ILR+A A Sbjct: 76 SDH-GNHQGVLLAMTPYAYATLDDLFKHAADKGEDPFFLLLDNLEDPHNLGSILRTADAS 134 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII K + ++ +AK ++GA+E++P R++NL ++ + G G + D + Sbjct: 135 GVHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKILKDRGMWIFGTAMDGQ 194 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + K AL++G EGKG+ P + + + M G +++LN S AA + +Y Sbjct: 195 DYRQWDAK-GSTALVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLNASVAAGILMYQA 252 >gi|260911205|ref|ZP_05917808.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472 str. F0295] gi|260634685|gb|EEX52772.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472 str. F0295] Length = 267 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 92/268 (34%), Gaps = 7/268 (2%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I SL + + ++R + AL+ + Sbjct: 4 ERITSLDHPGVE-------VFSALTETQLRNRLQPDKGVFIAESPKVIRVALDAGYEPLS 56 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 L ++ + PV T + ++ G L + + Sbjct: 57 MLCEERHIVGDAADIIARCGDIPVFTGERTLLAQLTGYTLTRGVLCAMRRKPMGNVAEVC 116 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 N+ + V+D V D NIGAI RSA A D ++ K + + + GA+ +P+ Sbjct: 117 GNATRVCVIDGVTDTTNIGAIFRSAAALGIDAVVLAKNACDPLNRRAVRVSMGAVFLVPW 176 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 L + + + ++A+++G EG GL + A Sbjct: 177 TWAEQPLAELSTIGFRTAAMALTHNSIPLNDARLKAEPRLAIVMGTEGDGLPSEVIAQAD 236 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + M + +LNV+ A+AVA + + Sbjct: 237 YVVRIPMAHGVDSLNVAAASAVAFWELR 264 >gi|258423820|ref|ZP_05686706.1| SpoU rRNA methylase [Staphylococcus aureus A9635] gi|257846052|gb|EEV70080.1| SpoU rRNA methylase [Staphylococcus aureus A9635] Length = 246 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ +I +K R + + GVH + A Sbjct: 1 MEQITSAQNNRIKQANKL-------------------KKKRERDKTGLALIEGVHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + L V + + + + G QG Sbjct: 42 YQS--EIVITQLFAIEPARLDQQIIAYAQ--EVFEINMKVAESLSG-TVTPQGFFAIIEK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + +Q ++++D V DP N+G ++R+A A D +I K + + +++ Sbjct: 97 PQYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P + T Q + + K+ + AL+LG EG+G+ Sbjct: 153 QGSVFHLPVMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSF----ALLLGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P+ T + + G ++LNV+ A ++ LY + Sbjct: 209 NPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245 >gi|257452951|ref|ZP_05618250.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|257466669|ref|ZP_05630980.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|315917823|ref|ZP_07914063.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|317059492|ref|ZP_07923977.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|313685168|gb|EFS22003.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|313691698|gb|EFS28533.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 237 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 105/231 (45%), Gaps = 4/231 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V L N + I +L K + + + I+ G Sbjct: 4 VIGINPVLEVLQNREKTIEKLEVYKGVRGEVLQKIQRLASERNIKIFY-TNKKIENSQGF 62 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 A ++ ++++LD + DP N GA++RSA F D II +R Sbjct: 63 CIFLTDYDYYREFDEILENMARKSQSIILILDEIQDPRNFGALIRSAEVFGVDAIIIPER 122 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + + K+++GA+E++P ++++NL++ ++K+ + G + +++ +E Sbjct: 123 NSVRINETVVKTSTGAIEYVPIVKVTNLSNTIEKLKKIDYWVYGAAGEAESSSAEEQYPQ 182 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K+ L+LG EG GLR K +E + + M G I +LNVS A + L Sbjct: 183 KVVLVLGNEGTGLRKKVREYCDKLIKIPMRGKINSLNVSVAGGILLSEIAK 233 >gi|300115389|ref|YP_003761964.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113] gi|299541326|gb|ADJ29643.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus watsonii C-113] Length = 284 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 109/239 (45%), Gaps = 10/239 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVGKE 108 YG+H V AAL P+ ++ L + + + + V + +D++V Sbjct: 31 YGLHAVRAALEQPALQVMALWLDQTRMDQSLQKLAKLAFDRGLKAQPVKREELDELVPGA 90 Query: 109 AVHQGLALE------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +A T L LD + LL++LD V DPHN+GA LR+A A G+ Sbjct: 91 RHQGVVARCSVQSALTEEGLLAFLDQLGTPPLLLLLDGVQDPHNLGACLRTAEAAGVHGV 150 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221 + K + +AV K ASGA E +P +R++NL ++ + G +G Sbjct: 151 VVPKDRAAGLTAVARKVASGAAERVPLVRVTNLARVMRALRERGLWLVGAVVGGTHATLY 210 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + L+LGAE +GLR TQE + + M G + +LNVS AA V L+ Q Sbjct: 211 ETDLQGPLGLVLGAEDRGLRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQR 269 >gi|301067314|ref|YP_003789337.1| rRNA methylase [Lactobacillus casei str. Zhang] gi|300439721|gb|ADK19487.1| rRNA methylase [Lactobacillus casei str. Zhang] Length = 259 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 13/239 (5%) Query: 49 LFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104 F++G H V AAL + I +L + + V T P Q +D + Sbjct: 15 EFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVSTAPKQKLDLM 74 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ L P TLD ++LD++ DPHN+G+ILR+A A Sbjct: 75 SD-QGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDPHNLGSILRTADAS 133 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I K + ++ +AK ++GA+E++P R++NL ++ + G + ++ Sbjct: 134 GVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKERGMW-VFGTAMDG 192 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + AL++G EGKG+ P + + + M G +++LN S AA + +Y Sbjct: 193 QDYRKWDAKGSTALVIGNEGKGISPGVAKLMDATIAIPMVGHVQSLNASVAAGILMYQA 251 >gi|215404054|ref|ZP_03416235.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis 02_1987] gi|289745918|ref|ZP_06505296.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis 02_1987] gi|289686446|gb|EFD53934.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis 02_1987] Length = 259 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 84/268 (31%), Gaps = 15/268 (5%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 + + A + HR + G + V+AAL + ++ T+ Sbjct: 5 RSARVATAVKLHRHV-----------GRRRAGRFLAEGPNLVAAALARG--LVREVFVTE 51 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 A R + H V V + + +A+ P + QL+ Sbjct: 52 VAARRHELLLA-AHEASVHLVTERAAKALSDTVTPAGLVAVCDLPATRLEDVLAGSPQLI 110 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIPYIRISN 194 V + +P N G ++R A A P + A + S + Sbjct: 111 AVTVEIREPGNAGTVIRIADAMGAAVADHRVGDHPLGGKCLRASTGSIFAIPVVVAPDVG 170 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 A + + + + + A + G E GL + A H+ Sbjct: 171 AAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAHGLSAEIAALADHRVHI 230 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFAK 282 M G ++LNV+ AAA+ LY + + Sbjct: 231 PMSGGAESLNVAAAAAICLYESARALGR 258 >gi|92118023|ref|YP_577752.1| RNA methyltransferase TrmH, group 3 [Nitrobacter hamburgensis X14] gi|91800917|gb|ABE63292.1| RNA methyltransferase TrmH, group 3 [Nitrobacter hamburgensis X14] Length = 283 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 123/274 (44%), Positives = 164/274 (59%), Gaps = 15/274 (5%) Query: 14 SLKDSHYAKLRRNHR-----------DYKKM--QSFNQKSRHTSQPENLFLYGVHTVSAA 60 S +D H + RR R D K+ + + R T LYG HTV+AA Sbjct: 2 SDRDPH-PRFRRASRPWGDSHARKAGDRKRPPGRGSARNGRETGADGPAILYGWHTVTAA 60 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L NP R+I +LL T+NA RL + P + V P ID+ +G +AVHQGL E P Sbjct: 61 LANPRRRIRKLLLTENAARRLANENIETRLTP-EIVRPSAIDQRLGPDAVHQGLLAEADP 119 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L SP +D + +++VLD + DPHN+GAI+RSA AF+ I+TT R+SP + VLAKSA Sbjct: 120 LPSPDIDTLAQEGIVLVLDQITDPHNVGAIMRSAAAFAVKAIVTTARHSPEATGVLAKSA 179 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 SGALE +P + + NL AL +++ GF T+GL S + L +AL+LGAEGKGL Sbjct: 180 SGALELVPLVLVQNLARALTELNDRGFMTVGLDSAGGEDLAAIQLRQPLALVLGAEGKGL 239 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 R T+ET ++A L MPG IK+LNVSNAA +ALY Sbjct: 240 RQLTRETCNAVARLDMPGDIKSLNVSNAAVLALY 273 >gi|116495758|ref|YP_807492.1| rRNA methylase [Lactobacillus casei ATCC 334] gi|239630169|ref|ZP_04673200.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116105908|gb|ABJ71050.1| rRNA methylase [Lactobacillus casei ATCC 334] gi|239527781|gb|EEQ66782.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 259 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 13/239 (5%) Query: 49 LFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104 F++G H V AAL + I +L + + V T P Q +D + Sbjct: 15 EFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVSTAPKQKLDLM 74 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ L P TLD ++LD++ DPHN+G+ILR+A A Sbjct: 75 SD-QGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDPHNLGSILRTADAS 133 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I K + ++ +AK ++GA+E++P R++NL ++ + G + ++ Sbjct: 134 GVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKERGMW-VFGTAMDG 192 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + AL++G EGKG+ P + + + M G +++LN S AA + +Y Sbjct: 193 QDYRKWDAKGSTALVIGNEGKGISPGVAKLMDATIAIPMVGHVQSLNASVAAGILMYQA 251 >gi|325204004|gb|ADY99457.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M01-240355] Length = 234 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 9/225 (4%) Query: 64 PSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET-- 118 + I +L + +A R + V ++ I K A HQG+A Sbjct: 4 NPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-KGARHQGVAGFIDA 62 Query: 119 ---APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 L L+ + LL++LD + DPHN+GA LR+A A +I K S +A Sbjct: 63 SKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNAT 122 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 ++K A GA E +PYI ++NL L+++ +G IG L D A ++G Sbjct: 123 VSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCDLPDSAAWVMGN 182 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 183 EGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 227 >gi|328881240|emb|CCA54479.1| putative rRNA methylase [Streptomyces venezuelae ATCC 10712] Length = 279 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 96/269 (35%), Gaps = 12/269 (4%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN----PSRKIFQLLATKNAL 78 + + +++ + G V A+ + + +L T A Sbjct: 7 ISPRSPRVVAARRLAKRN-FRGKDRLFIAEGPQAVREAVEHRGSTGEPTLVELFTTVEAA 65 Query: 79 ARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 R +A L V + ++ + + +L+ Sbjct: 66 ERYSAIIEAALASGARVHHASDAVLAEVSQTVTPQGLVGVCRFLDSPFEEIVAARPKLVA 125 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VL HV DP N G +LR A A D ++ T + +++ G+L H+P + Sbjct: 126 VLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKSVRASVGSLFHLPVAVGVPVE 185 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMA 252 A+ + S G + + + L+ E A + G E GL +T+ A ++ Sbjct: 186 QAVAGLKSAGVRILAADGAGEDDLDAELDAGTMGGPTAWVFGNEAWGLPEETRALADAVV 245 Query: 253 HLHMPGIIKALNVSNAAAVALYITQN-HF 280 + + G ++LN++ AAAV LY + Sbjct: 246 RVPIHGKAESLNLATAAAVCLYASARAQR 274 >gi|227533680|ref|ZP_03963729.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188664|gb|EEI68731.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 259 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 13/239 (5%) Query: 49 LFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104 F++G H V AAL + I +L + + V T P Q +D + Sbjct: 15 EFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVSTAPKQKLDLM 74 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ L P TLD ++LD++ DPHN+G+ILR+A A Sbjct: 75 SD-QGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDPHNLGSILRTADAS 133 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I K + ++ +AK ++GA+E++P R++NL ++ + G + ++ Sbjct: 134 GVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKERGMW-VFGTAMDG 192 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + AL++G EGKG+ P + + + M G +++LN S AA + +Y Sbjct: 193 QDYRKWDAKGSTALVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLNASVAAGILMYQA 251 >gi|160881446|ref|YP_001560414.1| RNA methyltransferase [Clostridium phytofermentans ISDg] gi|160430112|gb|ABX43675.1| RNA methyltransferase, TrmH family, group 3 [Clostridium phytofermentans ISDg] Length = 248 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 105/237 (44%), Gaps = 9/237 (3%) Query: 53 GVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 G + V A ++F L ++ + + + V + +D++ + Sbjct: 10 GRNAVLEAFRAGKTIDRLFILDGCQDGPIKSILREAKKYDTIITFVKKERLDQMSEEGKH 69 Query: 111 HQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 +A A + D A + L++LD + DPHN+GA+LR+A GII Sbjct: 70 QGVIAYAAAYEYAEVDDLLEAAKAKGEAPFLIILDGIEDPHNLGAMLRTANQAGAHGIII 129 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 KR + +A +AK ++GA+ + P +++NL ++++ G + S + + ++ Sbjct: 130 PKRRAVGLTATVAKVSAGAINYTPVAKVTNLVATMEELKQKGLWFVCA-DMSGEVMYRQN 188 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 I L++G+EG+G+ +E + + M G I +LN S A V Y + Sbjct: 189 LTGPIGLVIGSEGEGVSRLVKEKCDFVTKIPMVGDIDSLNASVAMGVLTYEIVRQRS 245 >gi|21230973|ref|NP_636890.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769023|ref|YP_243785.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|188992138|ref|YP_001904148.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. B100] gi|52783316|sp|Q8PAG5|RLMB_XANCP RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|21112593|gb|AAM40814.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574355|gb|AAY49765.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|167733898|emb|CAP52104.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris] Length = 249 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ GV+ V++++ N + + ++L KN + V+ V Q +D + G Sbjct: 7 WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALDGVGG 66 Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + A A L ++A + L+++LD V DPHN+GA LRSA A Sbjct: 67 QVRHQGVAARYAAARLWAENELEGLVEAAQGRALVLILDGVQDPHNLGACLRSAAAAGVT 126 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S + +A + K+++GA + IP + ++NL L+ + G GL+ +++ L Sbjct: 127 AVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L+LG EG GLR T+E + + MPG I++LNVS A V L+ Sbjct: 187 YSVDLRGNVGLVLGGEGDGLRRLTREHCDGLVKIPMPGDIESLNVSVATGVTLFEAVRQR 246 >gi|206890574|ref|YP_002249766.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742512|gb|ACI21569.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 248 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 112/246 (45%), Gaps = 12/246 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTID 102 + + +++YGV+ V + S + ++ +KN +++L L VK V I+ Sbjct: 4 KDKLMYIYGVNPVLESFK-ISDALKEIYISKNRISKLKEILRLAEEKSISVKIVEETFIE 62 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155 KI + VHQG+ + P + TLD ++LD V DP N G+I R A Sbjct: 63 KIT--QGVHQGVVAKIKPKKTITLDEALKISFKKNEPAFFLILDLVEDPQNFGSICRIAD 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A II K+ S + K+++GA+ H+ + I+N+ A++ + G + Sbjct: 121 AAGVHAIIYQKKRSVGIVPSVWKASAGAVWHVNLVEINNIKYAIKTLKEHNITIYGAEAQ 180 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +K + + LI+G+EGKG+R + + M G I +LNVS A+A+ + Sbjct: 181 AKDVFWESDFTQPLGLIVGSEGKGIRQTVIALCDKVIKIPMRGTINSLNVSVASALITFE 240 Query: 276 TQNHFA 281 Sbjct: 241 VLRQRK 246 >gi|153810011|ref|ZP_01962679.1| hypothetical protein RUMOBE_00392 [Ruminococcus obeum ATCC 29174] gi|149834189|gb|EDM89269.1| hypothetical protein RUMOBE_00392 [Ruminococcus obeum ATCC 29174] Length = 275 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 88/246 (35%), Gaps = 7/246 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + P + AL + L+ K+ PV T +T+ Sbjct: 30 NEPNPGLFIAESPKVIERALKAGYEPLSFLVEHKDLDGEAGDILARYPEIPVYTAEYETL 89 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K+ G L L + +NS+ + +L+++ +P NIGAI RSA A D Sbjct: 90 VKMTGYALARGMLCAMKRRTLPSVEEICKNSRRVAILENIVNPTNIGAIFRSAAALHMDA 149 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ T S A+ + G + IP+ T + + + Sbjct: 150 VLLTGGCSNPLYRRAARVSMGTVFQIPWTYFEKKTSWPEDGMKAIQNLGFKTVAMALRDD 209 Query: 222 QEIKNDK-------IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +D +A++LG EG GL +T + M + +LNV+ A+AVA + Sbjct: 210 SYSIDDPELLAQEKLAIVLGTEGDGLASETIADCDYTVKIPMAHGVDSLNVAAASAVAFW 269 Query: 275 ITQNHF 280 Sbjct: 270 ELGRKR 275 >gi|238026918|ref|YP_002911149.1| TrmH family RNA methyltransferase protein [Burkholderia glumae BGR1] gi|237876112|gb|ACR28445.1| RNA methyltransferase, TrmH family protein [Burkholderia glumae BGR1] Length = 260 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 106/257 (41%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ YK++++ ++ + L G+H +A L+ + + T ALA + Sbjct: 6 SRDNPLYKRLKALAGSTQQQRRGAQALLEGLHLAAAYLDANGQPELCV-VTDGALAHDET 64 Query: 84 DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A + P + V P + + GL L + + R + ++VLD V Sbjct: 65 RAIVARVEPQRVVSLPDALFGQLSSVVNGVGLLLLVERPAAALPE--RVTGTVVVLDGVQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA A + + + S+ + +S GA + D + ++ Sbjct: 123 DAGNVGSILRSAAAAGVAQVFCVSGTAYAWSSKVLRSGMGAHFLLDIHEDVEAADLIARL 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 S + ++ + +A + G EG G+ +E A + PG +++ Sbjct: 183 GVPV---ALTDSHGARAIDDCDLSGPVAWVFGNEGAGVSAPWREAAKLRVTIPQPGGMES 239 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ AAAV L+ Sbjct: 240 LNVAAAAAVCLFEQCRQ 256 >gi|283470347|emb|CAQ49558.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus ST398] Length = 246 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 104/277 (37%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ +I +K R + + GVH + A Sbjct: 1 MEQITSAQNNRIKQANKL-------------------KKKRERDKTGLALIEGVHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 I QL A + A + + V + + + + G QG Sbjct: 42 YQRGI-VITQLFAIEPAR---LDQQIIAYAQEVFEINMKVAESLSG-TVTPQGFFAIIEK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + +Q ++++D V DP N+G ++R+A A D +I K + + +++ Sbjct: 97 PQYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P + T Q + + K+ + AL+LG EG+G+ Sbjct: 153 QGSVFHLPVMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSF----ALLLGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P+ T + + G ++LNV+ A ++ LY + Sbjct: 209 NPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245 >gi|304387556|ref|ZP_07369745.1| TrmH family RNA methyltransferase [Neisseria meningitidis ATCC 13091] gi|304338443|gb|EFM04564.1| TrmH family RNA methyltransferase [Neisseria meningitidis ATCC 13091] Length = 261 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 93/283 (32%), Gaps = 26/283 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + + + + Q L GVH + Sbjct: 1 MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + + + + + + + V +V + KI + Sbjct: 43 LQSGGKPL-GVYIPEGKMPSEEVRRLRAVVPEDRVFSVSDGILKKISS-LTCADDVLALI 100 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + L A + +VLD V DP N+G +LRSA A ++ + + S + + Sbjct: 101 DIPDAGALPAGGDC---VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLR 157 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + GA + ++L L F T E + A + G EG Sbjct: 158 AGMGAHFLLDIYSQADLEIWLASYKGRVFATALREEKQAVLY-GEDLCEPTAWVFGNEGA 216 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G+ + A + M ++LNV+ AA + L+ + Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRS 259 >gi|313884744|ref|ZP_07818499.1| RNA methyltransferase, TrmH family, group 3 [Eremococcus coleocola ACS-139-V-Col8] gi|312620005|gb|EFR31439.1| RNA methyltransferase, TrmH family, group 3 [Eremococcus coleocola ACS-139-V-Col8] Length = 266 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 66/260 (25%), Positives = 116/260 (44%), Gaps = 11/260 (4%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLP 88 KK++ + + LYG V L P K+F + + Sbjct: 6 KKIRGKQVNKVIDQEQNDEILYGRQVVLTILEEKKPINKVFIQKGLSGDKIQTILELVKQ 65 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHV 141 + VP +D + + HQG+ + P+ +L+ ++LD + Sbjct: 66 RQLVFQEVPKAKLDDLS-QGQNHQGVVVTVPPVAYQSLEDCFALAEAKGQEPFFLILDGI 124 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DPHN+G+I+RSA A GII KR + S + ++AK+++GALEHIP +R++NL + + Sbjct: 125 EDPHNLGSIIRSADALGVHGIIIPKRRAASLTGIVAKTSTGALEHIPVVRVTNLGQVVDQ 184 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + G + IA+I+G EG+G+ K + A + M G ++ Sbjct: 185 LKTKGVWIFATDMAGQDIRSWNS-QGPIAVIIGNEGQGVSKKLLDHADQTITIPMVGHVQ 243 Query: 262 ALNVSNAAAVALYITQNHFA 281 +LN S AA++ +Y + Sbjct: 244 SLNASVAASIIMYEVASKRI 263 >gi|254521763|ref|ZP_05133818.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas sp. SKA14] gi|219719354|gb|EED37879.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas sp. SKA14] Length = 247 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 11/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ GV+ V++++ N + + ++L KN + V+ V Q +D VG Sbjct: 7 WIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENARRKGIDVRKVNAQALDG-VG 65 Query: 107 KEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+A A + + + LL+VLD V DPHN+GA LRSA A Sbjct: 66 GSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAGA 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S + +A + K+++GA + IP + ++NL+ L+ + G GL+ ++ Sbjct: 126 TAVIIPKDKSATVNATVRKTSAGAADRIPVVAVTNLSRCLKDLQKQGVWIYGLAGEATAS 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q IAL+LG E GLR T+E + + MPG I++LNVS AA V+L+ Sbjct: 186 LYQLDLKGNIALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVRQ 245 Query: 280 F 280 Sbjct: 246 R 246 >gi|170741100|ref|YP_001769755.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46] gi|168195374|gb|ACA17321.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46] Length = 268 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 109/235 (46%), Positives = 149/235 (63%), Gaps = 1/235 (0%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + + LYG H V+ AL NP R++ +LLAT+N LARL + +TV P I +V Sbjct: 35 EDTVVLYGWHPVAEALRNPRRRLTRLLATENGLARLTEEVGELR-IAPETVRPGEISALV 93 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 G +AVHQGL LE PL P ++ + +L+ LD + DPHN+GAI+R+A AF+ I+TT Sbjct: 94 GPDAVHQGLYLEAEPLPVPPIEDLPADAVLLALDQITDPHNVGAIVRTAAAFAVTAIVTT 153 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 R+SP+ + VLAKSASG LEH+P+I + NL +AL + GF IGL S++ PL + Sbjct: 154 ARHSPAATGVLAKSASGGLEHVPFITVRNLAEALIRFGEQGFTRIGLDSEAPVPLSEVTP 213 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + ++LGAEGKGLR +T+E MA L PG IK+LNVSNAAA+ LY Sbjct: 214 TRPLVIVLGAEGKGLRQRTRECCDVMARLDFPGAIKSLNVSNAAAITLYALAPRR 268 >gi|323356730|ref|YP_004223126.1| rRNA methylase [Microbacterium testaceum StLB037] gi|323273101|dbj|BAJ73246.1| rRNA methylase [Microbacterium testaceum StLB037] Length = 265 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 103/262 (39%), Gaps = 7/262 (2%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--D 82 + + ++++ + L G AL + +L AT AL + Sbjct: 5 PRSPRVRAVAKLSKRA-ARQETGLFLLEGPQAAREALAWAPETVLELYATPTALEKHTDV 63 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 DA ++ +D + +A+ + + +L+ + + V Sbjct: 64 RDAAEKAGVDLQYTTEAVLDAMADTVTPQGIVAVARQSPTALKDVLAGSPRLIAICEEVR 123 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R+A A D ++ T R + + +S +G+L H+P L ++++ Sbjct: 124 DPGNLGTIIRAADAAGADAVVLTGRTVDPYNPKVVRSTTGSLFHLPVAVDLELAHVVERV 183 Query: 203 HSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 H G + + D +++ ++ A + G E +GL A L + G + Sbjct: 184 HEAGLRVVAADVDGGDFLASRDLLSEPTAWLFGNEARGLDEAALAHADLSLRLPIFGRAE 243 Query: 262 ALNVSNAAAVALYI---TQNHF 280 +LN++ AA+V LY Q Sbjct: 244 SLNLATAASVCLYETAFAQRAR 265 >gi|158422502|ref|YP_001523794.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571] gi|158329391|dbj|BAF86876.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571] Length = 281 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 114/252 (45%), Positives = 158/252 (62%), Gaps = 1/252 (0%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K+ + + + LYG HTVS AL NP+R+ ++LAT+NA RL + P P Sbjct: 29 KRKGGPGRPPAWEGENDVALLYGWHTVSEALANPARRFRKILATENAANRLQEE-GFPLP 87 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + V P IDK++G +AVHQGL E L SP L V S L++VLD + DPHN+GAI Sbjct: 88 VAPEIVRPSEIDKLLGSDAVHQGLLAEAEHLPSPPLKKVAKSDLVLVLDQITDPHNVGAI 147 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +RSA AF+ I+TT R+SP + VLAKSASG LEH+P+ ++NL AL+++ + G + Sbjct: 148 VRSAAAFAVGAIVTTARHSPVATGVLAKSASGGLEHVPFCLVTNLARALEELKASGMLVV 207 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 GL S+ LE +AL+LGAEGKGLR T+ET +A + +PG IK+LNVSNAAA Sbjct: 208 GLDSEGPADLEDTAMRPPMALVLGAEGKGLRQLTRETCDVLARIDLPGAIKSLNVSNAAA 267 Query: 271 VALYITQNHFAK 282 ++L I + + Sbjct: 268 LSLGIARRALKR 279 >gi|323490595|ref|ZP_08095800.1| trmH family tRNA/rRNA methyltransferase yacO [Planococcus donghaensis MPA1U2] gi|323395687|gb|EGA88528.1| trmH family tRNA/rRNA methyltransferase yacO [Planococcus donghaensis MPA1U2] Length = 246 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 13/243 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIV 105 + G + V AL R I ++ + + V++VP + ID + Sbjct: 4 EIIGGKNPVLEALRAD-RDINKIWIAEGVQKKGITELLQLAKDKGVIVQSVPKKKIDGLT 62 Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 HQG+A A +LD ++LD + DPHN+G+I+R+A A Sbjct: 63 D--TNHQGIAAAVAAYNYASLDDLFDAATAKNEDPFFLILDELEDPHNLGSIMRTADAIG 120 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I KR + + V+AK+++GA+EH+P +RI+NL+ + ++ G G + Sbjct: 121 VHGLIIPKRRAVGLTGVVAKASTGAIEHVPVVRINNLSQTVDELKKRGVWIAGTDAKESV 180 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +A+I+G+EGKG+ +E + L M G + +LN S AA++ +Y Sbjct: 181 DYRRMDAALPLAVIIGSEGKGMSRILREKCDFLYQLPMIGHVTSLNASVAASLLMYEVYR 240 Query: 279 HFA 281 Sbjct: 241 KRN 243 >gi|191639244|ref|YP_001988410.1| TRNA/rRNA methyltransferase [Lactobacillus casei BL23] gi|190713546|emb|CAQ67552.1| TRNA/rRNA methyltransferase [Lactobacillus casei BL23] gi|327383324|gb|AEA54800.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus casei LC2W] gi|327386507|gb|AEA57981.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus casei BD-II] Length = 259 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 13/239 (5%) Query: 49 LFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104 F++G H V AAL + I +L + + V T P Q +D + Sbjct: 15 EFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVSTAPKQKLDLM 74 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ L P TLD ++LD++ DPHN+G+ILR+A A Sbjct: 75 SD-QGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDPHNLGSILRTADAS 133 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I K + ++ +AK ++GA+E++P R++NL ++ + + ++ Sbjct: 134 GVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKERSMW-VFGTAMDG 192 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + AL++G EGKG+ P + +M + M G +++LN S AA + +Y Sbjct: 193 QDYRKWDAKGSTALVIGNEGKGISPGVAKLMDAMIAIPMVGHVQSLNASVAAGILMYQA 251 >gi|198274931|ref|ZP_03207463.1| hypothetical protein BACPLE_01090 [Bacteroides plebeius DSM 17135] gi|198272378|gb|EDY96647.1| hypothetical protein BACPLE_01090 [Bacteroides plebeius DSM 17135] Length = 269 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 92/248 (37%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + + ++R Q + AL + L K+ Sbjct: 17 FSTLTEAQLRNRIDPQRGIFIAESPKVIRVALEAGYEPVSLLCERKHLTGDAADIVQRMA 76 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + ++ G L P P + R ++ ++V+ V D NIGA Sbjct: 77 HLPVYTGDRELLARLTGYTLTRGVLCAMRRPAPRPVEEVCRGARRVVVIHGVVDTTNIGA 136 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T + + + G++ +P+ + + L+++ Sbjct: 137 IFRSAAALGIDAVLLTTDSCDPLNRRAVRVSMGSVFLVPWTWVDRPLEQLKELGFRTAAM 196 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + ++AL++G EG GL E A + + M + +LNV+ A+ Sbjct: 197 ALTDRSVPLDYPPLKEEPRLALVMGTEGDGLPEAAIEGADYVVRIPMAHGVDSLNVAAAS 256 Query: 270 AVALYITQ 277 AVA + + Sbjct: 257 AVAFWELR 264 >gi|218768195|ref|YP_002342707.1| putative RNA methyltransferase [Neisseria meningitidis Z2491] gi|121052203|emb|CAM08526.1| putative RNA methyltransferase [Neisseria meningitidis Z2491] gi|316985032|gb|EFV63985.1| spoU rRNA Methylase family protein [Neisseria meningitidis H44/76] gi|325134334|gb|EGC56980.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M13399] gi|325140360|gb|EGC62882.1| RNA methyltransferase, TrmH family [Neisseria meningitidis CU385] gi|325144441|gb|EGC66741.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M01-240013] gi|325200182|gb|ADY95637.1| RNA methyltransferase, TrmH family [Neisseria meningitidis H44/76] gi|325206036|gb|ADZ01489.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M04-240196] Length = 261 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 52/282 (18%), Positives = 92/282 (32%), Gaps = 24/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + + + + Q L GVH + Sbjct: 1 MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L + + + + + +V + KI + Sbjct: 43 LQSGGMPVGVYIPEAKMPSEEVRKLTAVLPEDGFFSVSDGILKKISS-LTCADDVLALID 101 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + L A + +VLD V DP N+G +LRSA A +I K + + S + ++ Sbjct: 102 IPDAGALPAGGDC---VVLDGVQDPGNVGTVLRSAAAAGIGAVILGKGCADAWSPKVLRA 158 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 GA + I + + L + + L E + A + G EG G Sbjct: 159 GMGAHF-LSEIYPQADLEIWLVRYKGRVFATALREEKQAVLYGEDLCEPTAWVFGNEGAG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + A + M ++LNV+ AA + L+ A Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRA 259 >gi|226355334|ref|YP_002785074.1| trmH family tRNA/rRNA methyltransferase [Deinococcus deserti VCD115] gi|226317324|gb|ACO45320.1| putative trmH family tRNA/rRNA methyltransferase [Deinococcus deserti VCD115] Length = 241 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 115/241 (47%), Gaps = 10/241 (4%) Query: 50 FLYGVHTVSAALNNPSR-KIFQLLATKNALARLDWDANLP-HPFPVKTVPPQTIDKIVGK 107 LYG + V AL + ++ + A R V+ P +D++ G Sbjct: 2 LLYGRNPVMEALKDGRVSEVLLARGVEEAFVREVKTLAESVGGVRVRFSPRIELDQLAG- 60 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ E + ++D + + ++++LD + DP N GAI+RSA Sbjct: 61 TTQHQGILAEVEDMAWASMDDIMDRAEARGEDLVVVLLDGITDPRNFGAIIRSAEVLGAH 120 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ +R S S V+AK+A+GA ++P + NL + ++ + G G + ++ + L Sbjct: 121 GVVVEERRSAPLSPVVAKTAAGATSYLPVAQTKNLPRLIDQLKAEGVWVYGAAGEAAQEL 180 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + K+AL++GAEG+G+R +E + + + G +++LN S AA + LY Sbjct: 181 GKVDFSGKLALVIGAEGEGMRRLVREKCDVLVSIPVRGKVQSLNASVAAGILLYEATRGR 240 Query: 281 A 281 Sbjct: 241 K 241 >gi|262280749|ref|ZP_06058532.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262257649|gb|EEY76384.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 249 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 12/242 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 YGVH+V + L ++ L K RL L V+ +++K+ G Sbjct: 8 YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGLP 67 Query: 109 AVHQGLALETAPLL---SPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ P LD + + LL+ LD V DPHN+GA +R+A A + Sbjct: 68 -FHQGVVAAVRPHPVLNEQDLDQILSETPNALLLALDQVTDPHNLGACIRTAAAMGVQAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPL 220 I + + S + K A+G E + +I+++NL K + + +S PL Sbjct: 127 IVPRDRAASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDESALPL 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + + +++GAE GLRP TQ ++ M G +++LNVS A +ALY Sbjct: 187 QKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246 Query: 281 AK 282 ++ Sbjct: 247 SE 248 >gi|227495628|ref|ZP_03925944.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436] gi|226830860|gb|EEH63243.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436] Length = 322 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 72/290 (24%), Positives = 127/290 (43%), Gaps = 15/290 (5%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ--PENLFLYGVHTVSAALN 62 + K ++++ +H K+ + + KK Q+ ++R + + N + G + V A++ Sbjct: 35 TPKAEDRVYHA--AHKRKVEKEIAEKKKAQAEAHRTRTSIKIAAGNELIVGRNAVFEAVD 92 Query: 63 NPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 I LA R+ PV V ++ G E+ HQ + +E Sbjct: 93 AGIDIIRVFLAGNALDERIGKVVRTATALGAPVLEVTKMDLENASG-ESAHQSIGIEVPE 151 Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + L++ LD V DPHN+GA+LRS AF G++ ++R S S + Sbjct: 152 YDYCSAQDLLERTKENAQIPLIVALDQVTDPHNLGAVLRSGGAFGITGVLISERRSASVN 211 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232 A K ++GA +P R +NL AL ++ G +GL L + ++ Sbjct: 212 AAAWKVSAGAAARVPVARETNLVRALGELKEAGCFVVGLDGGGDVSLRDLDLATGPLVVV 271 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 GAEGKGL +ET + + + +++LN + A +ALY + A+ Sbjct: 272 TGAEGKGLSRLVRETCDQIVSIPISSAVESLNAAVATGIALYEVASKRAE 321 >gi|329889553|ref|ZP_08267896.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC 11568] gi|328844854|gb|EGF94418.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC 11568] Length = 279 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 89/278 (32%), Gaps = 25/278 (8%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 LI+ ++ I +++ H + G+ + AL+ Sbjct: 14 LITSLTNDTIKAVRALHM-------------------RKEREATSRFLAEGLKFIGEALD 54 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALET 118 + LL ++A D + V ++KI ++ L + Sbjct: 55 QGRAPVM-LLVGQDARPHPLLDRAKAETLKAGGQIIVVTHAILEKISRRDNPQTVLGVFE 113 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + L+ V DP N+G I+R+A + C G+I S + Sbjct: 114 QVYTPLDAIQPDAKPCWVALEQVRDPGNLGTIIRTADSAGCGGVILIGDCVDPFSVEAVR 173 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + G++ I ++ + L W IG D+ +++G E Sbjct: 174 ATMGSVF-AVTISKASREEFLAWRAQWPGSVIGTRLDATHGYRDSPVRHPAIIMMGNEQA 232 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 GL + + M G +LN++ A V +Y Sbjct: 233 GLTDELAAACDLNVKIPMRGRADSLNLAVATGVMVYAV 270 >gi|199598532|ref|ZP_03211949.1| rRNA methylase [Lactobacillus rhamnosus HN001] gi|199590574|gb|EDY98663.1| rRNA methylase [Lactobacillus rhamnosus HN001] Length = 260 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 13/239 (5%) Query: 49 LFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104 F++G H V AAL + I +L + + V T P Q +D + Sbjct: 16 EFVFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVATAPKQKLDLM 75 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+ L P TLD + ++LD++ DPHN+G+ILR+A A Sbjct: 76 SDH-GNHQGVLLAMTPYAYATLDDLFKHAADKGEDPFFLLLDNLEDPHNLGSILRTADAS 134 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII K + ++ +AK ++GA+E++P R++NL ++ + G G + D + Sbjct: 135 GVHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKILKDRGMWIFGTAMDGQ 194 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + K A+++G EGKG+ P + + + M G +++LN S AA + +Y Sbjct: 195 DYRQWDAK-GSTAIVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLNASVAAGILMYQA 252 >gi|325917513|ref|ZP_08179718.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas vesicatoria ATCC 35937] gi|325536271|gb|EGD08062.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas vesicatoria ATCC 35937] Length = 249 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ GV+ V++++ N + + ++L KN + V+ V Q +D + G Sbjct: 7 WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALDGVGG 66 Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + A A L +DA + L++VLD V DPHN+GA LRSA A Sbjct: 67 QVRHQGVAARYAAARLWAENELEGLVDAAQGRALVLVLDGVQDPHNLGACLRSAAAAGVT 126 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S + +A + K+++GA + IP + ++NL L+ + G GL+ +++ L Sbjct: 127 AVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 187 YSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGDIESLNVSVATGVTLFEAVRQR 246 >gi|309812910|ref|ZP_07706638.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] gi|308432982|gb|EFP56886.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] Length = 270 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 54/259 (20%), Positives = 95/259 (36%), Gaps = 8/259 (3%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-----ALARL 81 + K + +K R + G + AL+ R L A Sbjct: 11 NPRLKGLVGL-RKRRTRETEGLTLVEGYDELGLALDAGVRP-QTLYVCDELMLDAARQHD 68 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 DA + TV Q +++ +E LA+ + P + + + LL+V + V Sbjct: 69 VIDAARTAGAEIVTVARQAFERVAYREGPDGFLAVVPSVNAHPRMLDLPANPLLLVAEGV 128 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 P N+GA+LR+A A DG+I S + + ++ L+ Sbjct: 129 EKPGNLGAMLRTADAVGVDGVIA-ADPVTDWGNPNVVRGSKGTVFSVPVAAAPTSETLEW 187 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + I + D+ + +A+ +G E GL + ATS + M G + Sbjct: 188 LRDNDIPLIATTPDTDVMHTDIDLSGPVAVAVGTEKYGLTDEMLGAATSRVRIPMVGQVN 247 Query: 262 ALNVSNAAAVALYITQNHF 280 +LNV+ +AA+ LY Sbjct: 248 SLNVATSAAIVLYEAMRQR 266 >gi|148256472|ref|YP_001241057.1| putative rRNA methylase [Bradyrhizobium sp. BTAi1] gi|146408645|gb|ABQ37151.1| putative rRNA methylase [Bradyrhizobium sp. BTAi1] Length = 280 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 115/247 (46%), Positives = 152/247 (61%), Gaps = 1/247 (0%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + K + + R + LYG HTV+ AL NP R+I +L T+NA RL D + Sbjct: 24 KPRKFERPQPWRDREQGSDGPVILYGWHTVTLALGNPKRRIRKLYLTENAARRLA-DERI 82 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V P ID+ +G +AVHQGL E PL SP +D + +++VLD + DPHN+ Sbjct: 83 ETRVTPEIVRPSQIDQRLGPDAVHQGLLAEADPLPSPDIDTLAAEGMILVLDQITDPHNV 142 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAILRSA AF I+TT R+SP + VLAKSASGALE +P I + NL AL ++ GF Sbjct: 143 GAILRSAAAFDVKAIVTTARHSPEATGVLAKSASGALELVPIITVQNLARALTRLDERGF 202 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 QT+GL S + + +AL+LGAEGKGLR T+ET + +A L MPG IK+LNVSN Sbjct: 203 QTVGLDSAGPTDIAAVALREPLALVLGAEGKGLRQLTRETCSVVARLDMPGAIKSLNVSN 262 Query: 268 AAAVALY 274 AA +ALY Sbjct: 263 AAVLALY 269 >gi|56964446|ref|YP_176177.1| 23S rRNA methyltransferase [Bacillus clausii KSM-K16] gi|56910689|dbj|BAD65216.1| 23S rRNA methyltransferase [Bacillus clausii KSM-K16] Length = 246 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 56/277 (20%), Positives = 100/277 (36%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+E+I + K H + Q + G H V A Sbjct: 1 MKRIESVKNERIKAWKKLH-------------------SKKGRDQTGRFLIEGEHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + L +A V + + + QG+ Sbjct: 42 WKSDWKVETVLTTADDASLFPGE------CIGVSEAVMKEL----SETKSPQGIVAVCQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T + ++ +L+ D V DP N+G I+R+A+A G++ + +A + ++ Sbjct: 92 KQWHTPERLKGRFVLL--DRVQDPGNVGTIIRTALAADAAGVVLGSGCADLFNAKVIRAT 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GAL H+P +T S P +Q ++ AL+LG EG+G+ Sbjct: 150 QGALFHLPVYMGDLVTWIEALKESGIPVYGTS-LQDATPHDQFHSQEQFALLLGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + AT + ++LNVS AA + L+ + Sbjct: 209 QSHLLDAATENLFIRQNRKAESLNVSVAAGILLFALK 245 >gi|318060548|ref|ZP_07979271.1| rRNA methylase [Streptomyces sp. SA3_actG] gi|318080422|ref|ZP_07987754.1| rRNA methylase [Streptomyces sp. SA3_actF] gi|333028301|ref|ZP_08456365.1| putative rRNA methylase [Streptomyces sp. Tu6071] gi|332748153|gb|EGJ78594.1| putative rRNA methylase [Streptomyces sp. Tu6071] Length = 273 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 90/254 (35%), Gaps = 5/254 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + R + G V AL++ LL D Sbjct: 17 DYTSLTDVQLRRRREPEEGLFIAEGEKVVRRALDSGHGMRSMLLT--EKWLPAMADVIEA 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV V P+T +++ G LA L D + ++ + V + + D N+G Sbjct: 75 SEAPVYLVSPETAERVTGYHVHRGALASLHRTPLPAPADVLAGARRVAVFEDLVDHANLG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE---HIPYIRISNLTDALQKMHSW 205 A R+A A D + T R + K + GA+ + D +++ Sbjct: 135 AAFRNAAALGVDAALLTPRCADPLYRRAVKVSMGAVFSLPYARLEHWPADADTIKQAGFT 194 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 ++ ++AL+ G+EG GL P A + M I +LNV Sbjct: 195 LAAFCLSDRSLTLDALVAREDPRLALLFGSEGPGLTPAALTAADLHVRIPMQAGIDSLNV 254 Query: 266 SNAAAVALYITQNH 279 + A AV Y T+ + Sbjct: 255 AAATAVVFYATRKN 268 >gi|302518015|ref|ZP_07270357.1| rRNA methylase [Streptomyces sp. SPB78] gi|302426910|gb|EFK98725.1| rRNA methylase [Streptomyces sp. SPB78] Length = 273 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 90/254 (35%), Gaps = 5/254 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + R + G V AL++ LL D Sbjct: 17 DYTSLTDVQLRRRREPEEGLFIAEGEKVVRRALDSGHGMRSMLLT--EKWLPAMADVIEA 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV V P+T +++ G LA L D + ++ + V + + D N+G Sbjct: 75 SEAPVYLVSPETAERVTGYHVHRGALASLHRTPLPAPADVLAGARRVAVFEDLVDHANLG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE---HIPYIRISNLTDALQKMHSW 205 A R+A A D + T R + K + GA+ + D +++ Sbjct: 135 AAFRNAAALGVDAALLTPRCADPLYRRAVKVSMGAVFSLPYARLEHWPADADTIKQAGFT 194 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 ++ ++AL+ G+EG GL P A + M I +LNV Sbjct: 195 LAAFCLSDRSLTLDALVAREDPRLALLFGSEGPGLTPAALTAADLHVRIPMQAGIDSLNV 254 Query: 266 SNAAAVALYITQNH 279 + A AV Y T+ + Sbjct: 255 AAATAVVFYATRKN 268 >gi|188577053|ref|YP_001913982.1| RNA methyltransferase, TrmH family, group 3 [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521505|gb|ACD59450.1| RNA methyltransferase, TrmH family, group 3 [Xanthomonas oryzae pv. oryzae PXO99A] Length = 255 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 113/240 (47%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ GV+ V++++ N + + ++L KN + V+ V Q +D + G Sbjct: 7 WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALDGVAG 66 Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + A L ++A L+++LD V DPHN+GA LRSA A Sbjct: 67 QVRHQGVAARYAVARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVT 126 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S S +A + K+++GA + IP + ++NL L+ + G GL+ +++ L Sbjct: 127 AVVIPKDKSASVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 187 YSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEVVRQR 246 >gi|289548783|ref|YP_003473771.1| RNA methyltransferase, TrmH family, group 3 [Thermocrinis albus DSM 14484] gi|289182400|gb|ADC89644.1| RNA methyltransferase, TrmH family, group 3 [Thermocrinis albus DSM 14484] Length = 248 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 104/236 (44%), Gaps = 6/236 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + V A+ + L+A + ++ VP + I+++ G + Sbjct: 5 IIYGRNPVLEAIRSGRSVEKVLVAHDSHPPHQLVKLCKEKNIKLQKVPRKKIEELAGTKK 64 Query: 110 VHQGLALETAPLLSPTLDAVRNS----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 LA+ + + R + L+VLDH+ DP N+G +LR+ G + Sbjct: 65 TQGVLAILSPVHYVKEEELFRKTLERGSFLLVLDHLTDPQNVGNLLRTCEVLGGVGALLP 124 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 K S + + K++SGA+ H+ R+S+L + I + K + Q Sbjct: 125 KDRSCPINQTVIKASSGAVFHLLLSRVSSL-RRSLENFKRVGGWIVVVERGGKDIRQVDI 183 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280 AL+LG+EG+G+ E A + + M G I +LNVS+A A+A++ + H Sbjct: 184 PLPCALVLGSEGEGVSKSVMEIADLIVSIPMGGKITSLNVSSAGAIAIWETIKKHL 239 >gi|116669296|ref|YP_830229.1| RNA methyltransferase [Arthrobacter sp. FB24] gi|116609405|gb|ABK02129.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter sp. FB24] Length = 328 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 66/297 (22%), Positives = 120/297 (40%), Gaps = 23/297 (7%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKK---MQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 + K ++ + +H K K+ + +S + + G ++V AL Sbjct: 33 TPKAEDRPYH--KAHKNKQLAERSAAKRPGAARGAGARSGPKGRATEEVVTGRNSVVEAL 90 Query: 62 NNP---SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 + + + P+ +D++ +A+HQGL L+ Sbjct: 91 RAGIPAKALHVAIRIEMDDRVKESLKLAAERGIPLLETGKPELDRMTD-DAIHQGLVLQI 149 Query: 119 APLLSPTLD-------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 P V N+ L + LD + DP N+GAI+RS AFS G+I Sbjct: 150 PPYEYQDAYELAEETVESWKKGHVANAPLFVALDGITDPRNLGAIIRSVSAFSGHGVIVP 209 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 +R S +A K+++GA +P R +NL + L+ + G +GL D L Sbjct: 210 ERRSVGVTASAWKTSAGAAVRVPVARAANLNNTLKAFKNMGIYVLGLDGDGDVSLPDLSL 269 Query: 226 -NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + +++G+EGKGL +E + + + +++LN S A ++LY A Sbjct: 270 AKEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGISLYEISRQRA 326 >gi|297195412|ref|ZP_06912810.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486] gi|297152773|gb|EDY63126.2| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486] Length = 283 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 51/270 (18%), Positives = 96/270 (35%), Gaps = 12/270 (4%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN----PSRKIFQLLATKNAL 78 + + +++ + G V A+ + + +L T A Sbjct: 7 ISPRSPRVTAARRLAKRN-FRGKDRLFIAEGPQAVREAVAHRGPDGEATLVELFTTVEAA 65 Query: 79 ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 R + H V + ++ + + +L+ Sbjct: 66 ERYADIVDAAHAAGARVHHAADTVLAEVSQTVTPQGLVGVCRFLDSPFEDILAARPKLVA 125 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VL HV DP N G +LR A A D +I T + +++ G+ H+P + Sbjct: 126 VLAHVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKSVRASVGSHFHLPVAVGVPVE 185 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMA 252 A+Q + G + + ++ L+ E A I G E GL +T+ A ++ Sbjct: 186 QAVQGLRDAGVRVLAADGAGEQDLDDELDAGTMGGPTAWIFGNEAWGLPEETRALADAVV 245 Query: 253 HLHMPGIIKALNVSNAAAVALYITQN-HFA 281 + + G ++LN++ AAAV LY + A Sbjct: 246 RVPIHGKAESLNLATAAAVCLYASARAQRA 275 >gi|126735336|ref|ZP_01751082.1| RNA methyltransferase, TrmH family, putative [Roseobacter sp. CCS2] gi|126715891|gb|EBA12756.1| RNA methyltransferase, TrmH family, putative [Roseobacter sp. CCS2] Length = 284 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 95/254 (37%), Positives = 146/254 (57%), Gaps = 9/254 (3%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 K ++++ + E ++L+G+H V AL NP+R+ +L+ T+NAL RL DA Sbjct: 31 KWVIAKEQAKRQAAQETVWLFGLHAVRDALENPARQKLRLVVTRNALERLG-DAVAQSGM 89 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHN 146 + P+ + ++VHQG ALE PL +L+ V +++LD V DPHN Sbjct: 90 EPEISDPRKFAAPLDPQSVHQGAALEVKPLDWGSLEDVALGDGPMPPRIVLLDRVTDPHN 149 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAILRSA F ++ +R+S E+ LAK+ASGALE PY+R+ NL DA++ + G Sbjct: 150 VGAILRSAEVFGARAVVAVQRHSAPETGALAKTASGALERQPYLRVRNLADAMEALKGMG 209 Query: 207 FQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + +GL ++ +E ++ +AL++GAEG GLR KT+ET + + +L Sbjct: 210 YLVLGLDGEADLTVEAAVEGKRDRPVALVMGAEGPGLREKTRETCNELVKIDAAAGFGSL 269 Query: 264 NVSNAAAVALYITQ 277 NVSNAAAVALY + Sbjct: 270 NVSNAAAVALYAVK 283 >gi|82750744|ref|YP_416485.1| rRNA methyltransferase [Staphylococcus aureus RF122] gi|82656275|emb|CAI80689.1| rRNA methyltransferase [Staphylococcus aureus RF122] Length = 246 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ +I +K R + + GVH + A Sbjct: 1 MEQITSAQNNRIKQANKL-------------------KKKRERDKIGLALIEGVHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I QL A + A + + V + + + + G QG Sbjct: 42 YQSGI-VITQLFAIEPAR---LDQQIIAYAQEVFEINMKVAESLSG-TVTPQGFFAIIEK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + +Q ++++D V DP N+G ++R+A A D +I K + + +++ Sbjct: 97 PQYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P + T Q + + K+ + AL+LG EG+G+ Sbjct: 153 QGSVFHLPVMTQDLDTFITQFNGPVYGTALENAVTYKEVTSSDSF----ALLLGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P+ T + + G ++LNV+ A ++ LY + Sbjct: 209 NPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245 >gi|29830509|ref|NP_825143.1| tRNA/rRNA methyltransferase [Streptomyces avermitilis MA-4680] gi|29607621|dbj|BAC71678.1| putative tRNA/rRNA methyltransferase [Streptomyces avermitilis MA-4680] Length = 313 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 67/279 (24%), Positives = 110/279 (39%), Gaps = 14/279 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK---IFQ 70 ++ H K R K++Q + + + G + V AL Q Sbjct: 36 EMRKGH-KKNRIATAKTKQVQRRPAPRGRGGKSASEMVVGRNPVVEALREGVPATMLYVQ 94 Query: 71 LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 + R + P +D++ HQGL L+ P + + Sbjct: 95 QFIDNDERVREALQLAGERGGIHLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDL 153 Query: 130 R-------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L++ LD V DP N+GA++RS AF G++ +R + +A K+++G Sbjct: 154 SAAAYDVGEDPLVVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 213 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241 P R +NLT L+ G +GL++D + L E + +++G+EGKGL Sbjct: 214 TAARTPVARATNLTRTLESYKKEGLVVVGLTADGEVELGDLEALAGPVVIVVGSEGKGLS 273 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ET + MPG ++LN AA V LY Sbjct: 274 RLVGETCDFRVRIPMPGGAESLNAGVAAGVVLYEAARRR 312 >gi|219850021|ref|YP_002464454.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485] gi|219544280|gb|ACL26018.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM 9485] Length = 257 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 90/255 (35%), Gaps = 10/255 (3%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--WD 84 ++ K++++ +R + + + GV VS AL + L A Sbjct: 7 NQHVKRLRALADTARLRRRERSFVIEGVRLVSDALAAGAYLQVVLYAPDQLATTAAGATL 66 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 P + QG+ A D L ++LD + DP Sbjct: 67 LARLQHLPRCFPATPAVVAAAADTEQPQGVVAAVAWP-----DLPPRPGLRLILDEIQDP 121 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G +LRSA A +I + S +A++A GA + + L Sbjct: 122 GNVGTLLRSAAAAGVGLVICAPGTADPFSPKVARAAMGAHF---IVPLRLLPWDDIATEL 178 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G+ S +++P ALI+G E G+ + A S + M G I++LN Sbjct: 179 AGYTVYAADSAAQQPYYTVDWRQPAALIIGNEAHGVSTAARTLAHSTITIPMAGPIESLN 238 Query: 265 VSNAAAVALYITQNH 279 A ++ L+ Sbjct: 239 AGVAGSIILFEALRQ 253 >gi|310829598|ref|YP_003961955.1| RNA methyltransferase [Eubacterium limosum KIST612] gi|308741332|gb|ADO38992.1| RNA methyltransferase [Eubacterium limosum KIST612] Length = 283 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 72/283 (25%), Positives = 129/283 (45%), Gaps = 12/283 (4%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 KK+++ ++ H + ++ ++ + + + + G + V AL + + Sbjct: 2 KKNDR-KKTRNDHGREQKKESYHRADLKRRETRRQDDEGDDRFVIVGKNPVMEALRSEQQ 60 Query: 67 KIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 L+ N L A V++V ++ + + HQG+A AP Sbjct: 61 MDKLLILKDNKDHVLGDLAEKARRRGIVVQSVEKIKLEGLADGQ-PHQGVAAMMAPFPYS 119 Query: 125 TL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 ++ DA L+++LDH+ DPHN+GAI+RSA G+I KR S S +AV Sbjct: 120 SMEDVLAKADAKGEEPLVVILDHLTDPHNLGAIIRSANLCGVHGVIIPKRRSASLTAVSV 179 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 K++SGA+ H P +++ NLT + ++ + GF + P + K+A+I+G EG Sbjct: 180 KASSGAVAHTPIVKVGNLTQCIDELKAKGFWI-MAADMDGAPYYKNDFKGKLAIIIGNEG 238 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 KG+ P ++ + + G I + N S AAA+ L Sbjct: 239 KGISPNVKKQCDYSVSIPLYGDIDSFNASAAAAIILSEAARQR 281 >gi|332359132|gb|EGJ36953.1| SpoU rRNA methylase [Streptococcus sanguinis SK49] Length = 246 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + K H+ K R++ + + G H A Sbjct: 1 MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +++ + I ++ A RL + V V P+ + + + +A Sbjct: 40 ISSGAELI-RIFALAEYAERLADFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 92 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L+ V DP N+G I+R+A A DG+ + + + +S Sbjct: 93 RKEIPAELSGRY---LFLEDVQDPGNVGTIIRTADAACFDGVFISSSSADIYNLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+ S S + + D L++G EG+G+ Sbjct: 150 QGSHFHLPVYRMDTADFIRLAQSSSLLILASTLSSTSIDYREVDSKDSFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P+ A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPEMTAAADVLVHISMKGQAESLNVAVAAGILIFHL 245 >gi|329117061|ref|ZP_08245778.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus parauberis NCFD 2020] gi|326907466|gb|EGE54380.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus parauberis NCFD 2020] Length = 249 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 119/242 (49%), Gaps = 9/242 (3%) Query: 45 QPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + N +YGVH V +L N K++ + + P +++ + Sbjct: 8 EENNDMVYGVHAVVESLTANTGNKLYIQDDLRGKNVDKIKALATEKKVSISWTPKKSLSE 67 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + AVHQG L A LD + ++ L+++LD + DPHN G+ILR+A A Sbjct: 68 MTD-GAVHQGFVLRVAEYAYAELDEIISKADAEDNPLILILDGITDPHNFGSILRTADAT 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I K + + V+AK+++GA++H+P R++NL+ L K+ G+ G D Sbjct: 127 KVAGVIIPKHRAVGVTPVVAKTSTGAIQHMPIARVTNLSQTLDKLKEKGYWIFGTDMDGT 186 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + K+ALI+G+EGKG+ ++ M + M G +++LN AAAV +Y Sbjct: 187 PSPKWNT-SGKLALIIGSEGKGVSHNIKKQVDEMITIPMDGHVQSLNAGVAAAVLMYEVY 245 Query: 278 NH 279 + Sbjct: 246 RN 247 >gi|291523643|emb|CBK81936.1| rRNA methylases [Coprococcus catus GD/7] Length = 274 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 91/257 (35%), Gaps = 7/257 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y + +R + AL+ I L+ K+ + Sbjct: 18 YARWTENQLLNRKDPDNAMFIAESPKVIQTALDAGYEPISCLVEKKHVEGQAAPILAQCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + ++ G L + L D +N++ + +L+ V +P N+GA Sbjct: 78 DIPVYTAEFDVLTQLTGFGLTRGMLCVMRRKGLPSVEDVCKNARRIAILEDVMNPTNVGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A DGI+ T S + + G + IP+ + + + + Sbjct: 138 IFRSAAALGMDGILLTSASSNPLYRRAIRVSMGTVFQIPWTFMDSQMSWPEPAVGRLHEM 197 Query: 210 IGLSSDSKKPLEQEIKNDK-------IALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + +D +A++LG EG GL T + M + + Sbjct: 198 GFKIAAMALDDNSVSIDDPQLVHEEKLAIVLGTEGDGLAANTIADCDYTVKIPMYHGVDS 257 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ A+AVA + + Sbjct: 258 LNVAAASAVAFWEMRRR 274 >gi|294993699|ref|ZP_06799390.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 210] Length = 324 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 117/266 (43%), Gaps = 11/266 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79 A LR +H K+ ++ ++ + L G + V L + A Sbjct: 41 AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTEADE 99 Query: 80 RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131 RL + + +D++ +HQG+AL+ P D + Sbjct: 100 RLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQP 158 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP R Sbjct: 159 PALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 218 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +NLT L+ G + IGL + L+ D + +++G+EGKGL ++ + Sbjct: 219 ATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEV 278 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277 + M ++LN S AA V L Sbjct: 279 VSIPMAAQAESLNASVAAGVVLAEIA 304 >gi|215447913|ref|ZP_03434665.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85] Length = 296 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 117/266 (43%), Gaps = 11/266 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79 A LR +H K+ ++ ++ + L G + V L + A Sbjct: 15 AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTEADE 73 Query: 80 RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131 RL + + +D++ +HQG+AL+ P D + Sbjct: 74 RLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQP 132 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP R Sbjct: 133 PALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 192 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +NLT L+ G + IGL + L+ D + +++G+EGKGL ++ + Sbjct: 193 ATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEV 252 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277 + M ++LN S AA V L Sbjct: 253 VSIPMAAQAESLNASVAAGVVLAEIA 278 >gi|170692230|ref|ZP_02883393.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia graminis C4D1M] gi|170142660|gb|EDT10825.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia graminis C4D1M] Length = 247 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 115/239 (48%), Gaps = 7/239 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + + K+ + + + Sbjct: 6 VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLHTAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E + + A L+ LD + S LL+VLD V DPHN+GA LR A A + Sbjct: 66 TERHQGVVARAGDMPLAQNLAELLDGINGSPLLLVLDGVTDPHNLGACLRVADAAGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + + +A AK ASGA + +PYI ++NL AL+++ G +G + ++KK L + Sbjct: 126 IAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIVGTAGEAKKSLYE 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +A+++GAEG+G+R T +T + + M G +++LNVS A+ V L+ A Sbjct: 186 TELDGPVAIVMGAEGEGMRRLTHDTCDIVMQIPMAGTVESLNVSVASGVCLFEAVRQRA 244 >gi|167967116|ref|ZP_02549393.1| putative trna/rrna methyltransferase [Mycobacterium tuberculosis H37Ra] Length = 316 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 117/266 (43%), Gaps = 11/266 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79 A LR +H K+ ++ ++ + L G + V L + A Sbjct: 41 AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTEADE 99 Query: 80 RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131 RL + + +D++ +HQG+AL+ P D + Sbjct: 100 RLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQP 158 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP R Sbjct: 159 PALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 218 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +NLT L+ G + IGL + L+ D + +++G+EGKGL ++ + Sbjct: 219 ATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEV 278 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277 + M ++LN S AA V L Sbjct: 279 VSIPMAAQAESLNASVAAGVVLAEIA 304 >gi|15610715|ref|NP_218096.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis H37Rv] gi|148663443|ref|YP_001284966.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|148824785|ref|YP_001289539.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis F11] gi|215405628|ref|ZP_03417809.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|215413500|ref|ZP_03422177.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 94_M4241A] gi|218755363|ref|ZP_03534159.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503] gi|253800620|ref|YP_003033621.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435] gi|254234152|ref|ZP_04927476.1| hypothetical protein TBCG_03506 [Mycobacterium tuberculosis C] gi|254552688|ref|ZP_05143135.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260198621|ref|ZP_05766112.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46] gi|289441009|ref|ZP_06430753.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46] gi|289555843|ref|ZP_06445053.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 605] gi|289747416|ref|ZP_06506794.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|289755708|ref|ZP_06515086.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis EAS054] gi|289763758|ref|ZP_06523136.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503] gi|297636254|ref|ZP_06954034.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207] gi|297733247|ref|ZP_06962365.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN R506] gi|298527058|ref|ZP_07014467.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306786486|ref|ZP_07424808.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu003] gi|306790851|ref|ZP_07429173.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu004] gi|306791174|ref|ZP_07429476.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu005] gi|306795959|ref|ZP_07434261.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu006] gi|306801207|ref|ZP_07437875.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu008] gi|306805419|ref|ZP_07442087.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu007] gi|306969711|ref|ZP_07482372.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu009] gi|306974051|ref|ZP_07486712.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu010] gi|307081760|ref|ZP_07490930.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu011] gi|307086376|ref|ZP_07495489.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu012] gi|313660577|ref|ZP_07817457.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN V2475] gi|81345964|sp|P96861|Y3579_MYCTU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Rv3579c/MT3685 gi|254765083|sp|A5U8Q4|Y3618_MYCTA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MRA_3618 gi|1877310|emb|CAB07153.1| POSSIBLE TRNA/RRNA METHYLTRANSFERASE [Mycobacterium tuberculosis H37Rv] gi|124603820|gb|EAY61783.1| hypothetical protein TBCG_03506 [Mycobacterium tuberculosis C] gi|148507595|gb|ABQ75404.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|148723312|gb|ABR07937.1| hypothetical tRNA/rRNA methyltransferase [Mycobacterium tuberculosis F11] gi|253322123|gb|ACT26726.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435] gi|289413928|gb|EFD11168.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46] gi|289440475|gb|EFD22968.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 605] gi|289687944|gb|EFD55432.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|289696295|gb|EFD63724.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis EAS054] gi|289711264|gb|EFD75280.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503] gi|298496852|gb|EFI32146.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308328974|gb|EFP17825.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu003] gi|308332796|gb|EFP21647.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu004] gi|308340287|gb|EFP29138.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu005] gi|308343626|gb|EFP32477.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu006] gi|308348093|gb|EFP36944.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu007] gi|308352016|gb|EFP40867.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu008] gi|308352803|gb|EFP41654.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu009] gi|308356653|gb|EFP45504.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu010] gi|308360608|gb|EFP49459.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu011] gi|308364196|gb|EFP53047.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu012] gi|323717773|gb|EGB26971.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CDC1551A] gi|326905419|gb|EGE52352.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis W-148] gi|328460351|gb|AEB05774.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207] Length = 322 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 117/266 (43%), Gaps = 11/266 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79 A LR +H K+ ++ ++ + L G + V L + A Sbjct: 41 AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTEADE 99 Query: 80 RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131 RL + + +D++ +HQG+AL+ P D + Sbjct: 100 RLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQP 158 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP R Sbjct: 159 PALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 218 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +NLT L+ G + IGL + L+ D + +++G+EGKGL ++ + Sbjct: 219 ATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEV 278 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277 + M ++LN S AA V L Sbjct: 279 VSIPMAAQAESLNASVAAGVVLAEIA 304 >gi|89100738|ref|ZP_01173593.1| tRNA/rRNA methyltransferase [Bacillus sp. NRRL B-14911] gi|89084555|gb|EAR63701.1| tRNA/rRNA methyltransferase [Bacillus sp. NRRL B-14911] Length = 247 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 62/240 (25%), Positives = 109/240 (45%), Gaps = 7/240 (2%) Query: 48 NLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 F+ G + V AL KIF ++ + + V+ VP + +D++ Sbjct: 3 QDFIIGKNPVLEALRAERDINKIFIAEGSQGGQMQQVIGLAKTNGVLVQFVPKKKLDQMA 62 Query: 106 -----GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 G A L + + ++LD + DPHN+G+I+R+A A Sbjct: 63 EGIHQGVVAAVAAYEYAEVDDLFAAAEKKNEAPFFLLLDEIEDPHNLGSIMRTADAVGAH 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII KR + +A +AK+++GA+EHIP R++NL + ++ G G + + Sbjct: 123 GIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLARTIDELKEKGVWIAGTDAKGSEDY 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + L++G+EGKG+ ++ + HL M G + +LN S AAA+ +Y Sbjct: 183 RRFDGTMPLGLVIGSEGKGMGRLIRDKCDFLIHLPMAGHVTSLNASVAAALLMYEVYRKR 242 >gi|332521645|ref|ZP_08398098.1| RNA methyltransferase, TrmH family, group 3 [Lacinutrix algicola 5H-3-7-4] gi|332042734|gb|EGI78934.1| RNA methyltransferase, TrmH family, group 3 [Lacinutrix algicola 5H-3-7-4] Length = 244 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 107/239 (44%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++G+ + A+++ K+F K L + VP + ++++ + Sbjct: 7 VFGLRAIIEAISSNKSIDKVFLQKELKGELFNELVQLIKKNSINSSYVPVEKLNRLT--K 64 Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG + +P+ + + L ++LD ++D N GAI+R+A G Sbjct: 65 GNHQGAVAQISPIAFHDFETLVDNTIASGVTPLFLLLDQLSDVRNFGAIIRTAECTGVHG 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 I+ K+ + K+++GA+ +P ++ ++ DA+ + + G + I + + + Sbjct: 125 IVIQKKGGAPVNGDTIKTSAGAVFKVPICKVDHIKDAMFHLQASGVKVIAATEKTNDTVF 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A+++G+EG+G+ P + A + A L + G I++LNVS A LY Sbjct: 185 DVSFKQPCAIVMGSEGRGINPSVLKLADARAKLPLLGDIESLNVSVACGAFLYEAIRQR 243 >gi|146340002|ref|YP_001205050.1| putative rRNA methylase 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB-like [Bradyrhizobium sp. ORS278] gi|146192808|emb|CAL76813.1| putative rRNA methylase; putative 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB-like [Bradyrhizobium sp. ORS278] Length = 297 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 115/234 (49%), Positives = 151/234 (64%), Gaps = 1/234 (0%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT 100 R + + LYG HTVS AL NP R+I +L T+NA RL D ++ + V P Sbjct: 54 RDSDADGPVILYGWHTVSLALANPKRRIRKLYLTENAARRLA-DEHIETRVTPEIVRPSQ 112 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 ID+ +G +AVHQGL E PL SP +D + +++VLD + DPHN+GAILRSA AF Sbjct: 113 IDQRLGPDAVHQGLLAEADPLPSPDIDTLAPEGMILVLDQITDPHNVGAILRSAAAFDVK 172 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 I+TT R+SP + VLAKSASGALE +P I + NL AL +++ GFQT+GL S + Sbjct: 173 AIVTTARHSPEATGVLAKSASGALELVPMITVQNLARALTRLNERGFQTVGLDSAGDTDI 232 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL+LGAEGKGLR T+ET +++A L MPG IK+LNVSNAA +ALY Sbjct: 233 AAVTLRQPLALVLGAEGKGLRQLTRETCSAVARLDMPGAIKSLNVSNAAVLALY 286 >gi|237721658|ref|ZP_04552139.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229449454|gb|EEO55245.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 267 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 57/277 (20%), Positives = 100/277 (36%), Gaps = 13/277 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I I SL D + + ++R S ++ A Sbjct: 1 MPIIE------IHSLTDPRIE-------IFSTLTEAQLRNRIESDKGLFIAESPKVINVA 47 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 LN + L K+ PV T + + + G L P Sbjct: 48 LNAGYEPLALLCEQKHITGDAADIIERCGDIPVYTGARELLATLTGYTLTRGVLCAMHRP 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + R ++ + V++ V D NIGAI RSA A D I+ T+ + + + Sbjct: 108 TPKSVEEICRGARRIAVIEGVVDTTNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVS 167 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ IP+ + + L K+ K+A+++G EG GL Sbjct: 168 MGSVFLIPWAWLDGSPNELHKLGFRTVAMALTEKSISIDSPILATEPKLAIVMGTEGDGL 227 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R +T A + + M + +LNV+ A+A+A + + Sbjct: 228 RNETITEADYVVRIPMANGVDSLNVAAASAIAFWQLR 264 >gi|297626567|ref|YP_003688330.1| rRNA methylase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922332|emb|CBL56904.1| rRNA methylase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 286 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 96/254 (37%), Gaps = 7/254 (2%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 + + +H ++ G V AL +P + L+ A + D L Sbjct: 22 RSARRLLQHKHRAETGFFLAEGAQAVREALRSPG-AVDTLVVDDPARHQELVDLALDDGQ 80 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 + V + D + + + + +L+++ V DP N G ++ Sbjct: 81 LIDVVQGSSADLASLSDTKTPQGIIAVCHWSGSRFEDIAEPRLVVICAQVRDPGNAGTVV 140 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R A AF D ++ T + +++ G++ H+P I LT A++ H+ G Q + Sbjct: 141 RCADAFGADAVVLTHGSVDITNPKTVRASVGSIFHLPIISGVELTGAIEWAHASGLQVLA 200 Query: 212 LSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + A ++G E GL E A +A + M G ++LN+S A Sbjct: 201 ADGSGQPVDLMAGAGQLGQPTAWLMGNEAWGLPRHDLELADRVAAVPMWGAAESLNLSTA 260 Query: 269 AAVALYI---TQNH 279 AA+ LY Q Sbjct: 261 AAICLYATASAQRR 274 >gi|197122685|ref|YP_002134636.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp. K] gi|196172534|gb|ACG73507.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp. K] Length = 256 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 12/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +YGV+ V L + ++ + A V+ P +D++ Sbjct: 3 VVYGVNPVRELLRAGGGDVAEVWLAEGGTRGAAFAELERLGRGAGAKVRGAPRAKLDRLA 62 Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 G + HQG+ A L+ LL+VLD V DPHN+GAI+RSA A Sbjct: 63 GTDR-HQGVVAVVADFRYAELEDLLARAQAGGRPPLLVVLDGVEDPHNLGAIIRSAHALG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++ + + + +AK+++GA+E P R++N+ L+++ G ++ L++D ++ Sbjct: 122 AHGVVIPRDRAVGVTPAVAKASAGAVERCPVARVTNVAKTLERLKEAGIWSVALAADGER 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 PL + AL+LG+EG+G+RP + T A + M G + +L+VS +AAVALY Sbjct: 182 PLGEADLKGPTALVLGSEGEGIRPLVRRTCDLSARIPMSGDLDSLSVSASAAVALYEAAR 241 Query: 279 HFA 281 A Sbjct: 242 QRA 244 >gi|124267007|ref|YP_001021011.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] gi|124259782|gb|ABM94776.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] Length = 247 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 107/238 (44%), Gaps = 7/238 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 L+G H V+ + + +L ++A R + + + + G Sbjct: 7 ILFGFHAVTVRVKTAPGSVVELYIDGTRRDARMRQFIERAKEAGVRLIESDELRLQALCG 66 Query: 107 KEAVH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + A L LD V LL+VLD V DPHN+GA LR A + Sbjct: 67 THRHQGVVAKVTAAPATKSLDDLLDTVEGPPLLLVLDGVTDPHNLGACLRVADGAGAHAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K ++ +A +AK ASGA E +PY ++NL L ++ IG + D+ + L Sbjct: 127 IAPKDHAVGINATVAKVASGAAETVPYFMVTNLARTLGELKERNIWVIGTADDAPRTLYA 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +AL+LGAEG+G+R T++T + L M G +++LNVS A+ + LY Sbjct: 187 ADLRQAVALVLGAEGQGMRQLTRKTCDELVSLPMAGAVESLNVSVASGIGLYEAVRQR 244 >gi|88808428|ref|ZP_01123938.1| hypothetical protein WH7805_02022 [Synechococcus sp. WH 7805] gi|88787416|gb|EAR18573.1| hypothetical protein WH7805_02022 [Synechococcus sp. WH 7805] Length = 370 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 79/280 (28%), Positives = 130/280 (46%), Gaps = 13/280 (4%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 + +DS + R R + + KS + L+G H AAL R I + Sbjct: 35 RGSRSQDSRSLRSDRQDRRFDEKPRGEAKSHSADSVADDLLWGRHATQAALEAG-RPIHR 93 Query: 71 LLATKNAL--ARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 + T R V+ V + ++ G AVHQG+AL+TA + L Sbjct: 94 IWCTSEMRSAPRFMQLLRDAKASGVLVEEVTWARLAQMTG-GAVHQGIALQTAAAETLDL 152 Query: 127 DAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + LL+ LD + DPHN+GAI+RSA A G++ +R S + +AK Sbjct: 153 SDLIEGCAALQEAPLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKV 212 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 A+GALEH+P R+ NL +L+ + G++ +GL+ + + LE+ + + ++ G+E +G Sbjct: 213 AAGALEHLPVARVVNLNRSLETLKDAGYRVVGLAEEGDQTLEEVDLDGPLVVVTGSEDQG 272 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L T+ + + + GI +LN S A A+ LY Sbjct: 273 LSMLTRRHCDHLIRIPLRGITPSLNASVATALCLYEVARR 312 >gi|150389425|ref|YP_001319474.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF] gi|149949287|gb|ABR47815.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus metalliredigens QYMF] Length = 272 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 100/255 (39%), Gaps = 5/255 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--L 81 + K ++ + + ++ + + + G+ V + L + Sbjct: 9 SDKNAVLKHIKGLSLR-KNRIKHQQFTIEGLRIVEECFLHGGPIDHILYCDHIHQVQGGP 67 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLD 139 L +P KI E + L + + ++VLD Sbjct: 68 HLLEKLKEKYPCHQTMDSLFLKIADTETPQGIIAVVEMKNHQLESLDLEKKENPFIVVLD 127 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N+G I+R+A D II TK ++ ++ GA+ H+P I+ +N + + Sbjct: 128 EIQDPGNLGTIIRTAEGAKTDAIILTKGCVDPYNSKSIRATMGAIFHLPIIQSNNNEEWI 187 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + + + + + ++ K Q N+ IA+I+G E +G+ P + + G Sbjct: 188 YYLKANAVKLVASTLETDKNHFQLDYNNPIAMIIGNEARGIHPDILAQVDERVKIPILGK 247 Query: 260 IKALNVSNAAAVALY 274 I++LN S AA + +Y Sbjct: 248 IESLNASVAAGILIY 262 >gi|167037187|ref|YP_001664765.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256751285|ref|ZP_05492165.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus CCSD1] gi|320115605|ref|YP_004185764.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856021|gb|ABY94429.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749840|gb|EEU62864.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus CCSD1] gi|319928696|gb|ADV79381.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 254 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 88/238 (36%), Gaps = 11/238 (4%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + F+ G V AL + + + ++P + I Sbjct: 23 RYEEGMFFVEGTTNVLEALKSDFEIEYIV-------MGEGVKIDIPKGDFEIVHTTERIF 75 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 K + Q + ++ + ++ D++ DP N+G I+R+A AF I Sbjct: 76 KKISDTVTPQMVMAIIKIPKYVENTYIKEKGVYVIADNIQDPGNLGTIIRTADAFGVSAI 135 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 T + + +++ G++ HIP I ++ K L + Sbjct: 136 FTINNCVDVFNPKVLRASMGSIFHIPVIAATSQILLKLKQRGIKVFATYLKAQKLVHECN 195 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +DK+A +LG E KG+ + + M G ++LNVS AA++ LY +Q Sbjct: 196 I--SDKVAFVLGNEAKGVS--VVDLVDDFVKIPMTGEAESLNVSIAASIFLYESQRQR 249 >gi|325921140|ref|ZP_08183011.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas gardneri ATCC 19865] gi|325548412|gb|EGD19395.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas gardneri ATCC 19865] Length = 249 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ GV+ V++++ N + + ++L KN + V+ V Q +D + G Sbjct: 7 WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIEVRRVNTQALDGVGG 66 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + +A A L + LL++LD V DPHN+GA LRSA A S Sbjct: 67 QVRHQGVVARYAAARLWAENELEALVTAAEGRALLLILDGVQDPHNLGACLRSAAAASVT 126 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S + +A + K+++GA + IP + ++NL L+ + G GL+ +++ L Sbjct: 127 AVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L+LG E GLR T+E + + MPG I++LNVS AA V L+ Sbjct: 187 YSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGDIESLNVSVAAGVTLFEAVRQR 246 >gi|303254103|ref|ZP_07340218.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae BS455] gi|303262494|ref|ZP_07348436.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP14-BS292] gi|303266013|ref|ZP_07351908.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS457] gi|303268055|ref|ZP_07353856.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS458] gi|302598936|gb|EFL65967.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae BS455] gi|302636394|gb|EFL66887.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP14-BS292] gi|302642415|gb|EFL72761.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS458] gi|302644454|gb|EFL74706.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS457] Length = 246 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 102/276 (36%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLRQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L + V + + + QG+ Sbjct: 40 VQAGVT-IEKIFALENYRDQLATFSQT------VWVSEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLNQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+++ + S + + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFYL 245 >gi|323339372|ref|ZP_08079657.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus ruminis ATCC 25644] gi|323093195|gb|EFZ35782.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus ruminis ATCC 25644] Length = 248 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 114/250 (45%), Gaps = 12/250 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 + ++ + G H AAL + K+F K+ + A V VP Sbjct: 2 KEQKTDDFVI-GRHPAMAALKSGQDINKVFVQSGLKSDAIQEIVSAARKRSIVVSQVPKT 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152 +D + + HQG+ L A L+ ++LD + DPHN+G+ILR Sbjct: 61 KLDLLSDGQ-NHQGVVLAVAAFQYAELEDLFEAAAKKGEDPFFLILDGIEDPHNLGSILR 119 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A GII KR + ++ +AK+++GA+E++P R++NL + ++ + G G Sbjct: 120 TADAAGVHGIIIPKRRAVQLTSTVAKTSTGAVEYVPVCRVTNLAQTVDELKNRGLWIFGT 179 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + K AL++G EGKG+ ++ M + M G +++LN S AA++ Sbjct: 180 DMKGQDFRNWDAK-GPTALVIGNEGKGISSLLKKKCDEMLTIPMIGHVQSLNASVAASLL 238 Query: 273 LYITQNHFAK 282 +Y K Sbjct: 239 IYQGFTSRGK 248 >gi|332362244|gb|EGJ40044.1| SpoU rRNA methylase [Streptococcus sanguinis SK1056] Length = 246 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 106/276 (38%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + K H+ K R++ + + G H A Sbjct: 1 MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +++ I ++ A RL + V V P+ + + + +A Sbjct: 40 VSSGEELI-RIFALAEYAERLGDFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 92 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + L+ V DP N+G I+R+A A DG+ + + + +S Sbjct: 93 REAIPAELSGRY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+ S S + + + AL++G EG+G+ Sbjct: 150 QGSHFHLPVYRMDTADFIRLAQSSHLPILASTLSSTSIDYREVNSRESFALVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P+ E A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPEMTEAADILVHISMNGQAESLNVAVAAGILIFHL 245 >gi|225024569|ref|ZP_03713761.1| hypothetical protein EIKCOROL_01444 [Eikenella corrodens ATCC 23834] gi|224942720|gb|EEG23929.1| hypothetical protein EIKCOROL_01444 [Eikenella corrodens ATCC 23834] Length = 258 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 56/280 (20%), Positives = 99/280 (35%), Gaps = 23/280 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN I + + K + + +R + L GVH +SA Sbjct: 1 MNTIESAQ------------------NPTLKHLAKLLRSARARRESGQAVLEGVHLLSAY 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + Q+ + + + + L P + V QT + K TA Sbjct: 43 LQAGGQ-VLQVYVPASKMQQPETARLLSQLSPERVV--QTAGAALQKITSLSDAEEITAL 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + P + +VL+ + DP NIG ILRSA A ++ + + + S + ++ Sbjct: 100 IALPPTEPFDAEADCVVLERIQDPGNIGTILRSAAAAGVGQVVLSADCADAWSPKVLRAG 159 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GA + +L ++ H T + A + G EG G+ Sbjct: 160 MGAHFALRLFVEPDLAAWRERCHVPLLATALHRNSVSLYDCD--LRAPAAWLFGNEGAGV 217 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A+ + H+ M ++LNV+ AA V L+ Sbjct: 218 SETMLAAASRLVHIPMAVQTESLNVAMAATVCLFEQMRQR 257 >gi|307729459|ref|YP_003906683.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. CCGE1003] gi|307583994|gb|ADN57392.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. CCGE1003] Length = 247 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 115/239 (48%), Gaps = 7/239 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A + + + + + K+ + + + Sbjct: 6 VLYGFHAVTARIRHDASSVEDVYYDATRKDRRMTEFLHTAKEAGVRLIAADETRLWGLAR 65 Query: 107 KEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 E +A A L+ LD + S LL+VLD V DPHN+GA LR A A + Sbjct: 66 TERHQGVVARAGDLPLAQNLAELLDGINGSPLLLVLDGVTDPHNLGACLRVADAAGAHAV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + + +A AK ASGA + +PYI ++NL AL+++ G +G S ++ K L + Sbjct: 126 IAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIVGTSGEATKSLYE 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +A+++GAEG+G+R T++T + + M G +++LNVS A+ V L+ + Sbjct: 186 TELDGPVAIVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRS 244 >gi|237736329|ref|ZP_04566810.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817] gi|229421677|gb|EEO36724.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817] Length = 235 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 4/233 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107 + G++ V L N + I +L K A + + + G Sbjct: 4 IIGINPVMEVLQNKEKTIEKLEIFKGAKDDKINKIKRLASERNIKIFYTDKKR-ENSQGV 62 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 A ++++LD + DP N GA++RSA F GII +R Sbjct: 63 VVHVSDYDYYVDFGEFLEKIAPMEKSIVLILDEIQDPRNFGALIRSAEVFGVKGIIIPER 122 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + + + K+++GA+E++ ++++N++DA+ K+ + G + K QE Sbjct: 123 NAVRINETVVKTSTGAIEYVDIVKVTNISDAISKLKKLDYWVYGAEGEGSKDYSQEKYPS 182 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + AL+LG+EG G+R K +E+ + + M G I +LNVS A + L F Sbjct: 183 RTALVLGSEGNGIRKKVKESCDVLIKIPMYGKINSLNVSVAGGIILSEIVKSF 235 >gi|254479084|ref|ZP_05092437.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM 12653] gi|214034966|gb|EEB75687.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM 12653] Length = 253 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 97/238 (40%), Gaps = 12/238 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + + F+ G+++V AL++ + + ++ D + F + + + Sbjct: 23 RYEEKLFFVEGLNSVKEALDSDFKVEYVVVG-------EDVEFEFKGDFMLIRIANKLFK 75 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 KI Q + + D ++ + ++ D+V DP N+G I+R+A AF D + Sbjct: 76 KISD-TVTPQKIMAIVRMPVYREEDFIKEEGVYVIADNVQDPGNLGTIIRTADAFGVDAV 134 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 T + + +++ G++ HIP I +N K L + + Sbjct: 135 FTINNSVDIYNPKVLRASMGSIFHIPVIATANEVLYKLKGKGVKVFATHLKGEKFVHEVE 194 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A ILG E +G+ + + M G ++LNVS AAA+ LY +Q Sbjct: 195 I--DKGTAFILGNEARGVSS--LDFVDGFIKIPMTGRAESLNVSIAAAIFLYESQRQR 248 >gi|209544876|ref|YP_002277105.1| TrmH family RNA methyltransferase [Gluconacetobacter diazotrophicus PAl 5] gi|209532553|gb|ACI52490.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter diazotrophicus PAl 5] Length = 321 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 97/236 (41%), Positives = 134/236 (56%), Gaps = 2/236 (0%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +LYG+H AAL NP R+I Q+LAT++ A L N P P ++ + G+ Sbjct: 86 TYWLYGLHPALAALGNPERRIRQILATEDGEAALRERLNAPLPMQPHRTDRARLESLCGR 145 Query: 108 EAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 +AVHQG+A+ L S + D L++LD V DP N+GAILRSA AF ++ + Sbjct: 146 DAVHQGIAVLADALPSLAIEDMTGRPGPLLLLDQVTDPRNVGAILRSAAAFGAAAVVVME 205 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R +P E+ LAK+ASGALE +P +R+ NL L + S F +GL + Sbjct: 206 RNAPDETGALAKAASGALEIVPLVRVVNLARTLDALKSLDFWVVGLDAGGGILDGTSFGQ 265 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ++AL+LGAEG GLR T+E +A L MPG +++LNVSNAAAVALY K Sbjct: 266 RRVALVLGAEGDGLRRLTREHCDEIAGLAMPGDMESLNVSNAAAVALYELVR-RGK 320 >gi|260551451|ref|ZP_05825635.1| tRNA/rRNA methyltransferase [Acinetobacter sp. RUH2624] gi|260405445|gb|EEW98938.1| tRNA/rRNA methyltransferase [Acinetobacter sp. RUH2624] Length = 258 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 57/258 (22%), Positives = 98/258 (37%), Gaps = 9/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K ++ + + + + L G H A L +K+F L T+ AL D Sbjct: 8 SKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDL 66 Query: 84 DANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + H V + + L L T + + ++L++V Sbjct: 67 KKIIELHQGHVFIISEVLYKDLSTLGNT---LPCLAIIDLPKTASTIDYNVDTLILENVQ 123 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G +LRSA A + II T+ + + + ++ GA + LTD L K Sbjct: 124 DPGNVGTLLRSAAAANIKQIICTQGSASLWTPRVLRAGMGAHFSLSCFENFQLTDILPKF 183 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 F T S S + + ILG EG+G E A + PG ++ Sbjct: 184 DIPVFVTSSHRSTSLYSKD---LSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQES 239 Query: 263 LNVSNAAAVALYITQNHF 280 LNV+ A ++ + Sbjct: 240 LNVAIAGSICFFEMVRQR 257 >gi|68535913|ref|YP_250618.1| putative rRNA methylase [Corynebacterium jeikeium K411] gi|68263512|emb|CAI37000.1| putative rRNA methylase [Corynebacterium jeikeium K411] Length = 285 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 86/253 (33%), Gaps = 3/253 (1%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + ++ + + G ++V AA+ S + Sbjct: 19 PRIVNAAKLH-RAAARKKAGVFLVEGENSVEAAIATGSATDVYVTLAAAERFEPIIRTAG 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V + + + A+ L S +L+ V NDP N Sbjct: 78 YLNIYVHYITDKAAKHLSDTATTTGLFAVCKPVLWSVGKVLTPQPRLVSVPVETNDPGNA 137 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSW 205 G ++R A A D ++ + +S A++++G+L H+P R +N+ D + Sbjct: 138 GTLIRVADAMGADAVVFVGETADPQSCKAARASAGSLFHVPVARSTNVKDVLGQLRAQGM 197 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + EI A + G E GL + A + + G ++LN+ Sbjct: 198 QILATAADGEVSLDDAGEILTKPTAWLFGNEAHGLGEELLAEADLRVSIPIRGRAESLNL 257 Query: 266 SNAAAVALYITQN 278 + AA++ +Y + Sbjct: 258 ATAASICMYESSR 270 >gi|312139879|ref|YP_004007215.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S] gi|311889218|emb|CBH48532.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S] Length = 266 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 94/244 (38%), Gaps = 6/244 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFPVKTV 96 + + + G + V+ AL + +L T+ A R + + V Sbjct: 19 RGAERRKTGRFLVEGENAVAEALIAG--PVHELFFTEQAAERYPHLIERAVADGVRGSLV 76 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + I + +A+ + ++LL V + +P N G ++R A A Sbjct: 77 TDRAIRALSDTVTPPGVVAVCDLLDVPLATAVTSRTRLLAVPVAIGEPGNAGTVIRVADA 136 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D I + +S++G+L HIP +R N+ L + S G Q + ++D Sbjct: 137 VGADAAILAGDSVDPHNGKCVRSSAGSLFHIPIVRERNVDAVLDALTSAGIQILATAADG 196 Query: 217 KKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L++ A + G E GL A + + G ++LN++ AA++ LY Sbjct: 197 EVDLDEADDLLARPTAWLFGNEAHGLDAAVARRADHRVRIPIRGRAESLNLATAASICLY 256 Query: 275 ITQN 278 + Sbjct: 257 ASAR 260 >gi|85373248|ref|YP_457310.1| rRNA methylase [Erythrobacter litoralis HTCC2594] gi|84786331|gb|ABC62513.1| rRNA methylase [Erythrobacter litoralis HTCC2594] Length = 270 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 45/254 (17%), Positives = 87/254 (34%), Gaps = 5/254 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K ++S +K +H + G+ ++ A ++A + L Sbjct: 10 SNPTVKYLRSLREK-KHRKRERKFLAEGLRLLTDARECDRVPEMLVMAERRDPHPLLTAL 68 Query: 86 NLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 V + + KI GK + S + +++ + +V + Sbjct: 69 EEAVTGAGGEVIETSDEILAKITGKSNPQAVAGVFAEWNTSLSALDRQSAPIWLVAQALR 128 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G +LR+ A G+I S +++ GA+ + D L + Sbjct: 129 DPGNLGTMLRTGDAVGAGGLILLDDCVDPFSVEAVRASMGAVFTQQIAQARWD-DFLLWL 187 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 S Q + S P +++G E +GL + + M G + Sbjct: 188 RSGDGQLVAASLRDAVPYRGAAYAAPCFILVGNESQGLPENYETACDLRVTMPMRGRADS 247 Query: 263 LNVSNAAAVALYIT 276 LN + A AV Y Sbjct: 248 LNAAVAGAVLAYEV 261 >gi|262202744|ref|YP_003273952.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247] gi|262086091|gb|ACY22059.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247] Length = 269 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 97/250 (38%), Gaps = 11/250 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 ++ + + GV+ V AAL + +I +L + R V V Sbjct: 19 RAAARREQGRFLVEGVNAVQAALRSGHAQI--MLVPDDDQDRHASLIAEARDAGVDVVAI 76 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + E LL +LD V +LL V +P N G ++R A A Sbjct: 77 RPQAAVKLAETSTPTGIFAVCGLLDDSLDRVLAAAPRLLAVGVEPREPGNAGTLIRCADA 136 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D ++ + +S++G++ H+P +R +++DAL + + G + ++D Sbjct: 137 MGADAVVLLGDAVDPHNGKCVRSSAGSIFHLPIVRERSVSDALSAIAAAGVCVLATAADG 196 Query: 217 KKPLEQEI------KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + L+ A + G E GL Q A + + G ++LNV+ AA Sbjct: 197 ELILDDISDDADGLLTRPTAWLFGNEAHGLPVDVQAMADHRVAVPIRGRAESLNVAATAA 256 Query: 271 VALYI-TQNH 279 + LY + Sbjct: 257 ICLYASARRQ 266 >gi|160943165|ref|ZP_02090402.1| hypothetical protein FAEPRAM212_00650 [Faecalibacterium prausnitzii M21/2] gi|158445634|gb|EDP22637.1| hypothetical protein FAEPRAM212_00650 [Faecalibacterium prausnitzii M21/2] Length = 275 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 87/257 (33%), Gaps = 8/257 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ ++R + ++ AL+ + + L+ K Sbjct: 18 YARLTQAQLRNRLEPEKGIFIAESPKVIARALDAGYQPLSLLMERKQITGPAQEILTRCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + ++ G L P +++ + VL+ + D N+GA Sbjct: 78 DVPVYTADRELLAQLTGFALTRGVLCAFRRPAPRTVEQVCAHARRVAVLEGIVDSTNVGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ- 208 I RSA A + D ++ T + + G + +P+ +I + S Sbjct: 138 IFRSAAALNMDAVLITPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCPADWPENGSAQLHA 197 Query: 209 -------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 K+A++LG EG GL T + M + Sbjct: 198 LGFKTAAMALSDRSVSIDDAALAAEPKLAIVLGTEGDGLANSTIAACDYTVKIPMSHGVD 257 Query: 262 ALNVSNAAAVALYITQN 278 +LNV+ A+AVA + Sbjct: 258 SLNVAAASAVAFWQLGR 274 >gi|313889615|ref|ZP_07823259.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pseudoporcinus SPIN 20026] gi|313122042|gb|EFR45137.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pseudoporcinus SPIN 20026] Length = 248 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 71/236 (30%), Positives = 118/236 (50%), Gaps = 9/236 (3%) Query: 51 LYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V+ +L K++ + + D + P +T+ + + A Sbjct: 13 VYGVHAVTESLRANTGNKLYIQEDLRGKNVDIIKDLARNKKVSISWAPKKTLSDMT-EGA 71 Query: 110 VHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 VHQG L + L+ + L+++LD + DPHN G+ILR+A A G+I Sbjct: 72 VHQGFVLRVSAFAYSELETLIVKAEKEENPLILILDGLTDPHNFGSILRTADATKVSGVI 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + + V+AK+++GA+EH+P R++NL+ AL K+ GF G D + Sbjct: 132 IPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDKLKEAGFWIFGTDMDGTPVQKWN 191 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + K+ALI+G+EGKG+ ++ M + M G +++LN AAAV +Y H Sbjct: 192 T-SGKLALIIGSEGKGISTNIKKQVDEMITIPMGGHVQSLNAGVAAAVLMYEVFRH 246 >gi|304439586|ref|ZP_07399490.1| 23S rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371898|gb|EFM25500.1| 23S rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 252 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 93/278 (33%), Gaps = 31/278 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I ++++K K +S QK ++ + G + A Sbjct: 6 MEIIKSRQNKK------------------AKYYRSLLQK-KYRIKENLFLAEGAVVIREA 46 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+ + + K + + P + + + + + Sbjct: 47 LDF-VDPKYVAIEDKKDFGEII-NLLEERKIPYDIYDREVFETLSDTKTPQGIIGYFEVE 104 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + LD V DP NIG I+R++ AF DG++ + + S + +S Sbjct: 105 NKTFEPKPGKY----LYLDGVKDPGNIGTIIRTSEAFGIDGVLLSSECAELYSPKVVRST 160 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 ++ NL D G + K D +++G+E +G+ Sbjct: 161 MASIFRTKVYSDINLMDIRNGFKIICADLKGKNIREKTDW------DDTIVVIGSEAQGV 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + E + M I +LN + AA++ +Y Sbjct: 215 SKEILEICDEAVLIPMDKNIDSLNAAVAASLFMYEMTK 252 >gi|126435572|ref|YP_001071263.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] gi|126235372|gb|ABN98772.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] Length = 248 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 5/236 (2%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + G + V AAL + ++ AT++A AR A L V V + Sbjct: 13 RRRAARFLAEGPNLVEAALRRG--VVSEVFATEDAAARF---AALLVGADVHLVTERAAK 67 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A+ P +S + +L+ V ++P N G ++R A A D + Sbjct: 68 ALSDTVTPVGLVAVCRMPEVSLDEILGASPRLVAVAVETSEPGNAGTLIRLADAMGADAV 127 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + ++++G++ + + + + +H G + + D + L+ Sbjct: 128 ILAGNSVDPYNGKCLRASAGSIFGVSVVEAPDTAGLVAALHGAGLTVLATTLDGEVSLDD 187 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + A + GAE GL P+ A + + M G ++LNV+ AAA+ LY + Sbjct: 188 AELSGPTAWLFGAEAHGLAPEVAALADARVTIPMAGSAESLNVAAAAAICLYQSAR 243 >gi|260171370|ref|ZP_05757782.1| putative SpoU-like rRNA methylase [Bacteroides sp. D2] gi|315919681|ref|ZP_07915921.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693556|gb|EFS30391.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 280 Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 55/279 (19%), Positives = 99/279 (35%), Gaps = 13/279 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I I SL DS + + ++R + A Sbjct: 1 MPIIE------ISSLTDSGVE-------IFSTLTEAQLRNRIEPDKGLFIAESPKVIHVA 47 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 LN + L K+ PV T + + + G L Sbjct: 48 LNAGYEPLALLCEQKHITGDAAGIIERCGDIPVYTGERKLLATLTGYTLTRGVLCAMRRR 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + R ++ ++V++ V D NIG I RSA A D I+ T+ + + + Sbjct: 108 ALPSVEEVCRKARRIVVIEGVVDATNIGTIFRSAAALGIDAILLTRNSCDPLNRRAVRVS 167 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ IP+ + L+K+ K+A+++G EG GL Sbjct: 168 MGSVFLIPWTWLDGSPYELRKLGFRTVAMALTEKSISIDNPILATEPKLAIVMGTEGDGL 227 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +T A + + M + +LNV+ A+A+A + + Sbjct: 228 QNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQ 266 >gi|310777971|ref|YP_003966304.1| RNA methyltransferase, TrmH family, group 3 [Ilyobacter polytropus DSM 2926] gi|309747294|gb|ADO81956.1| RNA methyltransferase, TrmH family, group 3 [Ilyobacter polytropus DSM 2926] Length = 236 Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 62/233 (26%), Positives = 104/233 (44%), Gaps = 4/233 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL NP I ++ K + + + + G Sbjct: 4 IIGLNPVTEALQNPETNIEKIEIFKGLKDDKIGRIKSLASKRNIKIHFTDKRA-ENSQGV 62 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 A A +++VLD V DP N GAI+RSA F GII +R Sbjct: 63 VAFISQYDYYVDLGAFLEKVAKDEKSIVLVLDGVQDPRNFGAIVRSAEIFGVKGIIIPER 122 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + + K+++GA+EH+ I+++N+++A+QK+ + G KK E + Sbjct: 123 NSVKINETVVKTSTGAIEHVDIIKVTNISEAIQKLKKLDYWVYGAEGSGKKCYYDEKYPN 182 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + AL++G EG G+R K +E + ++ M G I +LNVS A + L Sbjct: 183 RTALVMGGEGSGIRKKVKENCDILVNIPMYGKINSLNVSVAGGILLSEIAKKI 235 >gi|88855453|ref|ZP_01130117.1| rRNA methyltransferase [marine actinobacterium PHSC20C1] gi|88815360|gb|EAR25218.1| rRNA methyltransferase [marine actinobacterium PHSC20C1] Length = 255 Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 104/256 (40%), Gaps = 7/256 (2%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHP 90 M +KS S+ L G +VS AL + +L AT AL R A Sbjct: 1 MAKLAKKS-ARSETGLFLLEGPQSVSEALQYRPELLVELYATPTALERHTEIARSAEAAD 59 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 V+ V Q ++ + +A+ S +L+ +L+ V DP N G I Sbjct: 60 IEVEFVSEQVLEAMADTVTPQGVIAVCRQFPTSVKDLLAGAPKLIAILEEVRDPGNAGTI 119 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A A DG+I T R + + ++ +G+L H+P +L L+++ + I Sbjct: 120 IRAADAAGADGVILTGRSVDLYNPKVVRATTGSLFHLPVAVGVDLEPVLERVKGADLRVI 179 Query: 211 GLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + A + G E +GL + A + + + G +++N++ Sbjct: 180 AADIKGGDLLAARNDGVLDHPTAWLFGNEARGLTDEHYALADWVISVPIYGHAESMNLAT 239 Query: 268 AAAVALYI-TQNHFAK 282 AA+V LY +K Sbjct: 240 AASVCLYESAFAQRSK 255 >gi|85707839|ref|ZP_01038905.1| rRNA methylase [Erythrobacter sp. NAP1] gi|85689373|gb|EAQ29376.1| rRNA methylase [Erythrobacter sp. NAP1] Length = 266 Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 89/255 (34%), Gaps = 7/255 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K ++S K +H + + G+ + A + QL+ +N D Sbjct: 9 SNPTVKYLRSLRDK-KHRKRAGQFLVEGLRLLEDARVSGHVP-RQLVMAENRDRHDLVDR 66 Query: 86 NL----PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 V T P + KI GK + + S ++ + +V + Sbjct: 67 LEGEVGAAGGEVITTTPDILSKITGKSNSQSVVGVFDELDTSLARLDRGSANIWLVAQDL 126 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G +LR+ A G+I + SA +++ GA+ + + + Sbjct: 127 RDPGNLGTMLRTGDAVGAGGLILIDDCADPFSAEAVRASMGAVFTQGMAQARWD-EFVPW 185 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + Q + S P +++G E +GL + + M G Sbjct: 186 LRGGPGQLVAASLRDAVPYRGAAYQAPCFILVGNESQGLPEAYEAECDLRVTMPMKGRAD 245 Query: 262 ALNVSNAAAVALYIT 276 +LN + A AV Y Sbjct: 246 SLNAAVAGAVLAYEV 260 >gi|50083619|ref|YP_045129.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] gi|52783290|sp|Q6FF50|RLMB_ACIAD RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|49529595|emb|CAG67307.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] Length = 248 Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 111/240 (46%), Gaps = 12/240 (5%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 YGVH+V + L ++ L K RL L V+ +++K+ G Sbjct: 8 YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILELAEPFGISVQKASRDSLEKLAGLP 67 Query: 109 AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ P L + LL+ LD V DPHN+GA +R+A A + Sbjct: 68 -FHQGVVAAVRPHPVLNEKDLDQLLQNNDQALLLALDQVTDPHNLGACIRTAAAMGIAAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK--PL 220 I + S S + K A+G E + +I+++NL L + + F + + +K P+ Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHIKAHFFVKVVGTMLDEKALPI 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + +A+++GAE GLRP TQ ++ M G +++LNVS AA +ALY Sbjct: 187 QKYDFSGNVAIVMGAEDTGLRPITQSQCDQTVYIPMSGNLQSLNVSVAAGMALYEACRQR 246 >gi|149012438|ref|ZP_01833469.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP19-BS75] gi|147763494|gb|EDK70430.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP19-BS75] Length = 246 Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 102/276 (36%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLRQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I ++ A +N +L + V + + + QG+ Sbjct: 40 VQAGVT-IEKIFALENYRDQLATFSQT------VWVSEDILLDLADSQ-TPQGIVAVVQK 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L + + V DP N+G I+R+A A G+I + + + S +S Sbjct: 92 EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+++ + S + + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFYL 245 >gi|183220443|ref|YP_001838439.1| putative rRNA methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910556|ref|YP_001962111.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775232|gb|ABZ93533.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778865|gb|ABZ97163.1| Putative rRNA methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 277 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 104/268 (38%), Gaps = 13/268 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--------IFQLLATKNA 77 ++ K + +K R+ + + F+ G + A+ I L + Sbjct: 12 SNPKVKWVAGLKEK-RNRDEEKKFFIEGYREIKKAITGNPNSPIPCLPVNITSLFISPEC 70 Query: 78 LARLDWDANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAP--LLSPTLDAVRNSQL 134 + ++ + P+ +P + +KI ++ +A+ P ++ + Sbjct: 71 FLGENEESLIASIRCPIFELPRKIFEKISYRDRPDGLIAVAETPSAMVPWNSLQTSETNP 130 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++++ V P N+G ILR+A G++ AS + I + Sbjct: 131 ILIIEGVEKPGNLGTILRTAEGAGV-GLVIVTDPRIDLFNPNVVRASTGTIFTLPVYIGD 189 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 LT+ L + G++ ++ + K +K + G+E GL P +E A + +L Sbjct: 190 LTEVLTEFKKQGYKRYAVTPEGKTLYTSVNLKEKSVFLFGSEQYGLSPLAKELADTTLYL 249 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFAK 282 M G +LN++ + + LY + +K Sbjct: 250 PMFGEADSLNLAMSCGIVLYESIRQRSK 277 >gi|295104633|emb|CBL02177.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3] Length = 275 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 87/257 (33%), Gaps = 8/257 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ ++R + ++ AL+ + + L+ K Sbjct: 18 YARLTQAQLRNRLEPEKGIFIAESPKVIARALDAGHQPLSLLMERKQITGPAQEILTRCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + ++ G L P +++ + VL+ + D N+GA Sbjct: 78 DVPVYTADRELLAQLTGFALTRGVLCAFRRPAPRTVEQVCAHARRVAVLEGIVDSTNVGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ- 208 I RSA A + D ++ T + + G + +P+ +I + S Sbjct: 138 IFRSAAALNMDAVLVTPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCPADWPENGSAQLHA 197 Query: 209 -------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 K+A++LG EG GL T + M + Sbjct: 198 LGFKTAAMALSDRSVSIDDAALAAEPKLAIVLGTEGDGLANSTIAACDYTVKIPMSHGVD 257 Query: 262 ALNVSNAAAVALYITQN 278 +LNV+ A+AVA + Sbjct: 258 SLNVAAASAVAFWQLGR 274 >gi|322435978|ref|YP_004218190.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9] gi|321163705|gb|ADW69410.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9] Length = 263 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 98/258 (37%), Gaps = 9/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R + K++++ Q + + + G H V AL + + + + ++ R++ Sbjct: 10 SRTNPRLKQLRAAFQ-GQARLSSGLIAVEGEHMVEEALKSG-QALKTVFLSE----RMEL 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVN 142 A +P V +V I AL P S L+++ + Sbjct: 64 PAYVPASVEVVSVASDVFASIAETRTPQGIAALLVPPAHSVEKMLEGPGEALILIAVGLQ 123 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ++RSA AF G++TT + ++++G++ +P + + Sbjct: 124 DPGNLGTLIRSAEAFGATGVLTTPGTVSPWNQKAMRASAGSVFRLPVAVATPDAMETLEQ 183 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + D + + A+++G EG GL A + PG +++ Sbjct: 184 QGIKL--LAAMKDDAVAIGEADLTVGSAILIGNEGAGLNEDWLRLADQRVTIPCPGWVES 241 Query: 263 LNVSNAAAVALYITQNHF 280 LN + A ++ LY Sbjct: 242 LNAAVAGSILLYEASRQR 259 >gi|148653655|ref|YP_001280748.1| tRNA/rRNA methyltransferase SpoU [Psychrobacter sp. PRwf-1] gi|148572739|gb|ABQ94798.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter sp. PRwf-1] Length = 278 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 102/276 (36%), Gaps = 9/276 (3%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + I + ++ + K ++ +SR + L GVH + AAL Sbjct: 3 DIITNKFSNYPVITSDKNPTAKLAKALLNQSRQRKKSGQTVLEGVHLIEAALQADFLPEQ 62 Query: 70 QLL-----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 ++ + L +N V V I + + +A+ P Sbjct: 63 IIISYSGLSHPEVQTLLSSLSNYNLDNKVTVVSDSVYQGITTLGSGVEIMAIVKVPQHDL 122 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + ++L+ V D N+G +LR+A A II TK + + S ++ GA Sbjct: 123 QALKSPITTDCLILNDVQDNGNVGTLLRTAAAVGIKTIICTKGSAQAWSPKTMRAGMGAQ 182 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + L + F T S + + ++ N +A ++G EG+G+ Sbjct: 183 FGLTIYEGIEADEVLAYLRLPVFATS---SHTDNIIYKQNLNRPVAWVMGHEGQGVCDDI 239 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + AT L P ++LNV+ A A+ +Y T Sbjct: 240 MKLAT-PVALPQPNGQESLNVAIAGALCMYETLRQR 274 >gi|332367397|gb|EGJ45130.1| SpoU rRNA methylase [Streptococcus sanguinis SK1059] Length = 269 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 106/276 (38%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + K H+ K R++ + + G H A Sbjct: 24 MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 62 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +++ + I ++ A RL + V V P+ + + + +A Sbjct: 63 VSSGAELI-RIFALAEYAERLADFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 115 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + L+ V DP N+G I+R+A A DG+ + + + +S Sbjct: 116 REKIPAELSGHY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSM 172 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+ S S + + + AL++G EG+G+ Sbjct: 173 QGSHFHLPVYRMDTADFIRLAQSSRLPILASTLSSTSIDYREVDSKESFALVMGNEGQGI 232 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P+ A + H+ M G ++LNV+ AA + ++ Sbjct: 233 SPEMTAAADILVHISMKGQAESLNVAVAAGILIFHL 268 >gi|294651075|ref|ZP_06728412.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|292823024|gb|EFF81890.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 258 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 95/257 (36%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K ++ + + + + L G H A L +KIF L T+ ALA D Sbjct: 8 SKDNAKIKHLRGLIELNSARKKHQQTVLEGSHLCIAWLQQ-QKKIFSLFTTEQALAHTDL 66 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + V + + K + + + L++ +++ D Sbjct: 67 QKVMELHQGHVFVISEVLYKDLSTLGTTLPCLAIIDLPKTASTIDFGVDTLIL--ENIQD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LRSA A + II T+ + S + ++ GA + L + L K Sbjct: 125 PGNVGTLLRSAAAANIKQIICTQGSATLWSPRVLRAGMGAHFSLNCFENFQLNEILPKFQ 184 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F T S S + ILG EG+G E A + PG ++L Sbjct: 185 IPVFVTSSHRSTSLYSKD---LTQPCVWILGNEGQGASEYALEHA-QAVTIPQPGGQESL 240 Query: 264 NVSNAAAVALYITQNHF 280 NV+ A ++ + Sbjct: 241 NVAIAGSICFFEMVRQR 257 >gi|237708881|ref|ZP_04539362.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237724754|ref|ZP_04555235.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265756251|ref|ZP_06090580.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|229436949|gb|EEO47026.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229456943|gb|EEO62664.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263233842|gb|EEZ19451.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 268 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 94/245 (38%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + + R + +S AL+ + + K+ P Sbjct: 20 LTEAQLRQRIELGKGVFIAESPNVISRALDAGYEPLALMCERKHISGSAAHIIKRCGDVP 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + + + G L P+L + R+++ ++V+D V D NIGAI R Sbjct: 80 VYTGDRELLATLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIFR 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D ++ T+ + + + G++ +P+ + L K+ Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWLDGTIGDLNKLGFRTAAMALT 199 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 ++A+++G EG+GL KT A + + M + +LNV+ AAAVA Sbjct: 200 DDSISIDHPILAAEPRLAIVMGTEGEGLSYKTIAEADYVVRIPMAHGVDSLNVATAAAVA 259 Query: 273 LYITQ 277 + + Sbjct: 260 FWQLR 264 >gi|197105361|ref|YP_002130738.1| rRNA methylase protein [Phenylobacterium zucineum HLK1] gi|196478781|gb|ACG78309.1| rRNA methylase protein [Phenylobacterium zucineum HLK1] Length = 261 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 39/253 (15%), Positives = 83/253 (32%), Gaps = 5/253 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDW 83 + K +++ + + + + G+ V+ + + + A R Sbjct: 9 NPTVKAVRALHLR-KDRDETGLFLAEGLKHVTEGVELGHAPRILMYGPEAASHPLLRKAA 67 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 DA V V + + K+ ++ + + + + + + L V D Sbjct: 68 DATRRAGGEVIEVTQEILAKVSRRDNPQAVVGVFPQVYRPLSEIDPKAADCWVALHRVRD 127 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+R+A A C G + +V A A+ + + Sbjct: 128 PGNLGTIVRTADAAGC-GGVILVGECCDPYSVEAVRATMGSVFAVPLSRCGEAEFAAWRK 186 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 W +G + +++G E +GL P+ + M G +L Sbjct: 187 GWPGSVVGTLLSATHSHASADYRKPALILMGNEQQGLTPEMAALPDLNVKIPMRGRADSL 246 Query: 264 NVSNAAAVALYIT 276 N+S A + +Y Sbjct: 247 NLSVATGIMIYAA 259 >gi|50913671|ref|YP_059643.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394] gi|50902745|gb|AAT86460.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394] Length = 245 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 97/231 (41%), Gaps = 10/231 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + ++ + G H A + + + + + RL + L V PQ + + Sbjct: 22 HRKQSYLIEGWHLFEEAQKSG-QVFRHIFVLEEMVERLAGEQEL------VIVSPQVLKE 74 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + + +A P L+ D +VL+ V DP N+G I+R+A A +G+ Sbjct: 75 LTDSPSPQGIVAEVEIPKLAFPSDYKGKY---LVLEDVQDPGNLGTIIRTADAARFNGVF 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +++ + + +S G+ H+P R + S + Sbjct: 132 LSEKSADIYNQKTLRSMQGSHFHLPIWRTDVYQLCRELQEYKTPILATTLSKKSVDYKSL 191 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++++AL+LG EG+G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 192 TYHERLALVLGNEGQGISAEMVALADQLVHITMPGQAESLNVAVAAGILIF 242 >gi|294626313|ref|ZP_06704915.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665594|ref|ZP_06730874.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599314|gb|EFF43449.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604643|gb|EFF48014.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 249 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ GV+ V++++ N + + ++L KN + V+ V Q +D + G Sbjct: 7 WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALDGVGG 66 Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + A A L ++A L+++LD V DPHN+GA LRSA A Sbjct: 67 QVRHQGVAARYAAARLWAENELEGLIEAAAGRALVLILDGVQDPHNLGACLRSAAAAGVT 126 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S + +A + K+++GA + I + ++NL L+ + G GL+ +++ L Sbjct: 127 AVVIPKDKSATVNATVRKTSAGAADRIAVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 187 YSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEAVRQR 246 >gi|225181655|ref|ZP_03735095.1| tRNA/rRNA methyltransferase (SpoU) [Dethiobacter alkaliphilus AHT 1] gi|225167636|gb|EEG76447.1| tRNA/rRNA methyltransferase (SpoU) [Dethiobacter alkaliphilus AHT 1] Length = 264 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 62/282 (21%), Positives = 109/282 (38%), Gaps = 20/282 (7%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +IS + +R K +S +K + Q + L G + A Sbjct: 1 MTVISSTQ------------------NRYVKLYRSL-EKRKIRIQQNLVPLEGEKLIRDA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + L + L PV ++ + D+ ++ LA+ P Sbjct: 42 IERRVLPEVVYLREGLTPEEFPFLQALESQVPVLSIAEKLFDRTAFTDSPQGILAVAPRP 101 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T V+ LL+V D V DP N+G +LRSA A DG I + + ++A Sbjct: 102 KSDLTDLFVKKPALLLVADGVQDPGNLGTMLRSAAAAGADGAILLPGTVDATNPKALRAA 161 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GA + +N D L + G + ++ ++ ++ N +A+++G EG G+ Sbjct: 162 MGAYF-ALSVVETNHQDCLSALAGHGVSLVTTAARAEVAYDRYDWNTPVAVVIGNEGSGV 220 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 P E A S + M G +++LN + A +V + K Sbjct: 221 SPAMAEAAKSRVSIPMAGAVESLNAAIAMSVIFFEAARQRRK 262 >gi|193078079|gb|ABO13014.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 258 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 96/257 (37%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K ++ + + + + L G H A L +K+F L T+ AL D Sbjct: 8 SKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDL 66 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + + + K + + + L++ ++V D Sbjct: 67 KKIIELHQGHVFIISEVLYKDLSTLGNTLPCLGIIDLPKTASTIDYSVDTLIL--ENVQD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LRSA A + II T+ + S + ++ GA + LTD L K Sbjct: 125 PGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKFD 184 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F T S S + + ILG EG+G E A + PG ++L Sbjct: 185 IPVFVTSSHRSTSLYSKD---LSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQESL 240 Query: 264 NVSNAAAVALYITQNHF 280 NV+ A ++ + Sbjct: 241 NVAIAGSICFFEMVRQR 257 >gi|169632711|ref|YP_001706447.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF] gi|169795055|ref|YP_001712848.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|184159160|ref|YP_001847499.1| rRNA methylase [Acinetobacter baumannii ACICU] gi|213158283|ref|YP_002320334.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii AB0057] gi|215482603|ref|YP_002324795.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB307-0294] gi|301346649|ref|ZP_07227390.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB056] gi|301512367|ref|ZP_07237604.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB058] gi|301596456|ref|ZP_07241464.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB059] gi|332851098|ref|ZP_08433207.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii 6013150] gi|332869629|ref|ZP_08438840.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii 6013113] gi|332875988|ref|ZP_08443774.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii 6014059] gi|169147982|emb|CAM85845.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|169151503|emb|CAP00266.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii] gi|183210754|gb|ACC58152.1| rRNA methylase [Acinetobacter baumannii ACICU] gi|213057443|gb|ACJ42345.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii AB0057] gi|213988442|gb|ACJ58741.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB307-0294] gi|322509073|gb|ADX04527.1| Putative tRNA/rRNA methyltransferase [Acinetobacter baumannii 1656-2] gi|323519054|gb|ADX93435.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715] gi|332730262|gb|EGJ61587.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii 6013150] gi|332732676|gb|EGJ63908.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii 6013113] gi|332735854|gb|EGJ66895.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii 6014059] Length = 258 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 96/257 (37%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K ++ + + + + L G H A L +K+F L T+ AL D Sbjct: 8 SKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDL 66 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + + + K + + + L++ ++V D Sbjct: 67 KKIIELHQGHVFIISEVLYKDLSTLGNTLPCLAIIDLPKTASTIDYSVDTLIL--ENVQD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LRSA A + II T+ + S + ++ GA + LTD L K Sbjct: 125 PGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKFD 184 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F T S S + + ILG EG+G E A + PG ++L Sbjct: 185 IPVFVTSSHRSTSLYSKD---LSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQESL 240 Query: 264 NVSNAAAVALYITQNHF 280 NV+ A ++ + Sbjct: 241 NVAIAGSICFFEMVRQR 257 >gi|238027543|ref|YP_002911774.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1] gi|237876737|gb|ACR29070.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia glumae BGR1] Length = 250 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 9/239 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106 LYG H V+A L + + + ++L + R D + + + Sbjct: 6 VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMTDFLQTAKEAGVRLIAADETRLWGLAH 65 Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E HQG+ L+ LD ++ LL+VLD V DPHN+GA LR A A Sbjct: 66 TER-HQGVVARVEDLPLAQNLAELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + + +A AK ASGA + +PYI ++NL AL+++ G IG + D+ L Sbjct: 125 IIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTADDAPASLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +AL++GAEG+G+R T++T + +L M G +++LNVS A+ V LY Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDDVMNLPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|190573530|ref|YP_001971375.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] gi|190011452|emb|CAQ45070.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] Length = 247 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 11/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ GV+ V++++ N + + ++L KN + V+ V Q +D VG Sbjct: 7 WIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENARRKGIDVRKVNSQALDG-VG 65 Query: 107 KEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+A A + + + LL+VLD V DPHN+GA LRSA A Sbjct: 66 GSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAGA 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S + +A + K+++GA + IP + ++NL+ L+ + G GL+ ++ Sbjct: 126 TAVIIPKDKSATVNATVRKTSAGAADLIPVVAVTNLSRCLKDLQKQGVWIYGLAGEATAS 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q IAL+LG E GLR T+E + + MPG I++LNVS AA V+L+ Sbjct: 186 LYQLDLKGNIALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVRQ 245 Query: 280 F 280 Sbjct: 246 R 246 >gi|327404233|ref|YP_004345071.1| TrmH family RNA methylase [Fluviicola taffensis DSM 16823] gi|327319741|gb|AEA44233.1| RNA methyltransferase, TrmH family, group 3 [Fluviicola taffensis DSM 16823] Length = 274 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 65/269 (24%), Positives = 111/269 (41%), Gaps = 13/269 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 K R R Q R + +YG+ V A+ N +I ++L K Sbjct: 4 KKNDREERGGGFNQDKRNFERKPKEDPTDIIYGIRVVIEAIKN-EVEINKILIQKGIDKD 62 Query: 81 LDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL--- 134 L + + ++ VP + ++K+ HQG+ T+P+ ++ + + L Sbjct: 63 LFEELRTVLTGKEYQLQFVPVEKLNKLT--VNNHQGVIAFTSPVEYKNIEELCDQWLSEG 120 Query: 135 ----LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++VLD + D N G I R+A D I+ + S SA K+++GAL IP Sbjct: 121 KEPCILVLDRITDVRNFGGIARTAACMGVDAILVPSKGSALVSADAIKTSAGALHSIPVC 180 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + L ++L + GFQ + + SK E A+I+G+E G+ + + Sbjct: 181 KTDLLKNSLFYLQQSGFQLVSCTEKSKVSAENYSFFGPTAIIVGSEEDGISHDLLKMSDV 240 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G I +LNV A + LY Sbjct: 241 RLSIPMAGDISSLNVGVATGMILYERLKQ 269 >gi|291520861|emb|CBK79154.1| rRNA methylases [Coprococcus catus GD/7] Length = 260 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 108/257 (42%), Gaps = 4/257 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K+++ KS+ + + G+ V+ P+ ++ ++ +++ R + Sbjct: 6 SNPQMKRIKELLNKSKQRRKEKCFVAEGIRMVAE---TPADRLEKVYVSES-FYRHPPEL 61 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V Q ++ + +A+ S + LL+ L+++ DP Sbjct: 62 RGLDLSKALIVDDQVFRQVSDTQTPQGIMAVVRQQENSLDAIMKQPDALLLFLENIQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ++R+A GII ++ + + ++ G+L +P++ + + + ++ + Sbjct: 122 NLGTMMRTAEGAGVTGIIMSRETTDIYNPKTIRATMGSLYRMPFVYVDDFCETIRMAKAQ 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + K + E ++G EG GL + ++AT + M G +++LN Sbjct: 182 GIRLYAAHLKGKHTYDGEDYRQPSGFLIGNEGNGLTQEAADSATDYIRIPMGGQLESLNA 241 Query: 266 SNAAAVALYITQNHFAK 282 + AAAV +Y + Sbjct: 242 AVAAAVLMYEANRQRRE 258 >gi|56696046|ref|YP_166400.1| RNA methyltransferase [Ruegeria pomeroyi DSS-3] gi|56677783|gb|AAV94449.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria pomeroyi DSS-3] Length = 257 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 140/247 (56%), Gaps = 7/247 (2%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++++ S E ++L+G+H V AL NP R+ +L+ T NA +L + + Sbjct: 10 KEQAKKASAAETVWLFGLHAVRDALMNPKREKLRLIVTLNAREKLAEAIDAA-GIEPELA 68 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRS 153 + + +VHQG ALE PL +L V + +++LD V DPHN+GAILRS Sbjct: 69 DARRFSAPIDPGSVHQGAALEVKPLNWGSLAEVAIGAENPRVILLDRVTDPHNVGAILRS 128 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A +I T+ +S E+ LAK+ASGALE PY+R+ NL DA+ ++ G+ +GL Sbjct: 129 AEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADAITELQGMGYLVLGLD 188 Query: 214 SDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++ + +E + +AL+LGAEG GLR KT+ET + + G +LNVSNAAA Sbjct: 189 GEASETIEAALAGQTDRPVALVLGAEGPGLRQKTKETVDKLVKIDAAGGFGSLNVSNAAA 248 Query: 271 VALYITQ 277 +ALY ++ Sbjct: 249 IALYASK 255 >gi|78047165|ref|YP_363340.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035595|emb|CAJ23264.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 249 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ GV+ V++++ N + + ++L KN + V+ V Q +D + G Sbjct: 7 WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALDGVGG 66 Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + A A L ++A L+++LD V DPHN+GA LRSA A Sbjct: 67 QVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVT 126 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S + +A + K+++GA + IP + ++NL L+ + G GL+ +++ L Sbjct: 127 AVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 187 YSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEAVRQR 246 >gi|325925834|ref|ZP_08187204.1| 23S rRNA Gm-2251 2'-O-methyltransferase family [Xanthomonas perforans 91-118] gi|325543769|gb|EGD15182.1| 23S rRNA Gm-2251 2'-O-methyltransferase family [Xanthomonas perforans 91-118] Length = 252 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ GV+ V++++ N + + ++L KN + V+ V Q +D + G Sbjct: 10 WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALDGVGG 69 Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + A A L ++A L+++LD V DPHN+GA LRSA A Sbjct: 70 QVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVT 129 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S + +A + K+++GA + IP + ++NL L+ + G GL+ +++ L Sbjct: 130 AVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 189 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 190 YSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEAVRQR 249 >gi|237713180|ref|ZP_04543661.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262409427|ref|ZP_06085969.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647368|ref|ZP_06724961.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294809011|ref|ZP_06767733.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] gi|229446838|gb|EEO52629.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262352639|gb|EEZ01737.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637327|gb|EFF55752.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294443736|gb|EFG12481.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] Length = 267 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 56/277 (20%), Positives = 101/277 (36%), Gaps = 13/277 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I I SL D + + ++R S ++ A Sbjct: 1 MPIIE------IHSLTDPRIE-------IFSTLTEAQLRNRIESDKGLFIAESPKVINVA 47 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 LN + L K+ PV T + + ++ G L P Sbjct: 48 LNAGYEPLALLCEQKHITGDAADIIERYDDIPVYTGARELLARLTGYILTRGVLCAMHRP 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + ++ + V++ V D NIGAI RSA A D I+ T+ + + + Sbjct: 108 TPKSVEEICKGARRIAVIEGVVDTTNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVS 167 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ IP+ + + L K+ K+A+++G EG GL Sbjct: 168 MGSVFLIPWAWLDGSPNELHKLGFRTVAMALTEKSISIDSPILATEPKLAIVMGTEGDGL 227 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 R +T A + + M + +LNV+ A+A+A + + Sbjct: 228 RNETITEADYVVRIPMANGVDSLNVAAASAIAFWQLR 264 >gi|325202280|gb|ADY97734.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M01-240149] Length = 234 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 9/225 (4%) Query: 64 PSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET-- 118 + I +L + + R + V ++ I K A HQG+ Sbjct: 4 NPKSIVELYVQEGKNDVRTREVLEKAANENIRVYFADADRLNAIS-KGARHQGVVGFIDA 62 Query: 119 ---APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 L L+ + LL++LD + DPHN+GA LR+A A +I K S +A Sbjct: 63 SKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNAT 122 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 ++K ASGA E +PYI ++NL L+++ +G IG L D A ++G Sbjct: 123 VSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCDLPDSAAWVMGN 182 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 EG G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 183 EGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 227 >gi|327462015|gb|EGF08344.1| SpoU rRNA methylase [Streptococcus sanguinis SK1057] Length = 246 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 106/276 (38%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + K H+ K R++ + + G H A Sbjct: 1 MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +++ I ++ A RL + V V P+ + + + +A Sbjct: 40 VSSGEELI-RIFALAEYAERLGDFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 92 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + L+ V DP N+G I+R+A A DG+ + + + +S Sbjct: 93 REAIPAELSGRY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+ S S + + + AL++G EG+G+ Sbjct: 150 QGSHFHLPVYRMDTADFIRLAQSSHLPILASTLSSTSIDYREVNSRESFALVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P+ E A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPEMTEAADILVHISMKGQAESLNVAVAAGILIFHL 245 >gi|260577991|ref|ZP_05845915.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734] gi|258603881|gb|EEW17134.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734] Length = 285 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 86/253 (33%), Gaps = 3/253 (1%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +S + + G ++V AA+ S + Sbjct: 19 PRIVNAAKLH-RSAARKKAGVFLVEGENSVEAAIATGSATDVYVTLAAAERFEPIIRTAG 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V + + + A+ L S QL+ V NDP N Sbjct: 78 YLNIYVHYITDKAAKHLSDTATTTGLFAVCKPVLWSVGKVLTPQPQLVSVPVETNDPGNA 137 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSW 205 G ++R A A D ++ + +S A++++G+L H+P R +N+ D + Sbjct: 138 GTLIRVADAMGADAVVFAGETADPQSCKAARASAGSLFHVPVARSTNVKDVLGQLRAQGL 197 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + EI A + G E GL + A + + G ++LN+ Sbjct: 198 QILATAADGEVSLDDAGEILTKPTAWLFGNEAHGLGEELLAEADLRVSIPIRGRAESLNL 257 Query: 266 SNAAAVALYITQN 278 + AA++ +Y + Sbjct: 258 ATAASICMYESSR 270 >gi|194365073|ref|YP_002027683.1| TrmH family RNA methyltransferase [Stenotrophomonas maltophilia R551-3] gi|194347877|gb|ACF51000.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas maltophilia R551-3] Length = 247 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 11/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ GV+ V++++ N + + ++L KN + V+ V Q +D VG Sbjct: 7 WIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENARRKGIDVRKVNSQALDG-VG 65 Query: 107 KEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+A A + + + LL+VLD V DPHN+GA LRSA A Sbjct: 66 GSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAGA 125 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S S +A + K+++GA + IP + ++NL+ L+ + G GL+ ++ Sbjct: 126 TAVIIPKDKSASVNATVRKTSAGAADLIPVVAVTNLSRCLKDLQKQGVWIYGLAGEATAS 185 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L Q IAL+LG E GLR T+E + + MPG I++LNVS AA V+L+ Sbjct: 186 LYQLDLKGNIALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVRQ 245 Query: 280 F 280 Sbjct: 246 R 246 >gi|86742921|ref|YP_483321.1| RNA methyltransferase TrmH, group 3 [Frankia sp. CcI3] gi|86569783|gb|ABD13592.1| RNA methyltransferase TrmH, group 3 [Frankia sp. CcI3] Length = 363 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 109/250 (43%), Gaps = 11/250 (4%) Query: 41 RHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLP--HPFPVKTVP 97 R + + G + V AL + + RL L V V Sbjct: 112 RPRRTEGDELVVGRNAVVEALRAGVPSSTLFIAGGLDFDERLADARRLAGRAGIAVADVG 171 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAIL 151 +D++ G A HQGLAL P D LL+ LD V DP N+GA++ Sbjct: 172 RTDLDRMCG-TAPHQGLALVVPPFRYAHPDDLLARARSSPPGLLVALDGVTDPRNLGAVV 230 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA AF G++ +R + +A K+++GA +P R +NL L + G +G Sbjct: 231 RSAAAFGAHGVVVPERRAAGVTAAAWKTSAGAAARLPVARATNLARTLVSYAAGGQFVVG 290 Query: 212 LSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 L++DS+ +++ + D + L++G+EG+GL ++ + M G +++LN AA Sbjct: 291 LAADSEVSIDELTMATDPLVLVIGSEGRGLSRLVEQRCDVRVRIPMAGAVESLNAGVAAG 350 Query: 271 VALYITQNHF 280 + L Sbjct: 351 ITLAEIARRR 360 >gi|329119707|ref|ZP_08248387.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327464156|gb|EGF10461.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 259 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 101/259 (38%), Gaps = 5/259 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++ K + +++ Q L G H + A L + ++ Q+ ++ L + Sbjct: 6 SPHNTQLKHLAKLGVSAKYRRQYRQTVLEGAHLLDALLQSGAQP-QQVFIAQSRLHTPET 64 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + L D+++ K + + + P A + +VL+ + D Sbjct: 65 QSLLARL--PSENTAAVEDRLLAKASALSDGGGILSLVEIPETAAPPQNGDCVVLERIQD 122 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P NIG ILRSA A II + + S + ++A GA + SNL Q Sbjct: 123 PGNIGTILRSAAAAGVRQIIAGEGCADLWSPKVLRAAMGAHFLLRLHPASNLAVWRQTYR 182 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F + + PL + A + G EG GL + TAT + M G ++L Sbjct: 183 EPLF--ATALTANSTPLYRLNLRPPCAWLFGNEGGGLTAAARNTATRTVKIPMSGATESL 240 Query: 264 NVSNAAAVALYITQNHFAK 282 NV+ AA V L+ ++ Sbjct: 241 NVAMAATVCLFEQLRQRSE 259 >gi|262341137|ref|YP_003283992.1| tRNA/rRNA methyltransferase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272474|gb|ACY40382.1| tRNA/rRNA methyltransferase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 253 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 108/248 (43%), Gaps = 15/248 (6%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-----ARLDWDANLPHPFPVKTVPPQT 100 + +YG+ + A+ + + I +L + + + P++TVP Q Sbjct: 2 SKLEIVYGIRPLIEAIRS-KKTISKLFFQRGFRKISNAYKELISLSKKENIPIQTVPKQK 60 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRS 153 ++ K HQG+ +P+ + + + LL++LD + D N G+I+R+ Sbjct: 61 FYQL--KNKNHQGVFAILSPIETYQIKDLLPVFYEKGKNPLLVILDRITDVRNFGSIIRT 118 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 + D II K+Y+ + K++SGAL +P + N+ + ++ + + G + + + Sbjct: 119 SACVGADAIIIPKKYTAMIGSDSIKTSSGALFKVPICQEKNIKNTIEFLMNSGLKIVSAT 178 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 S + ALILG E KG+ PK E + A + I +LNVS A V L Sbjct: 179 EKSNIYWYNIDFSGPTALILGNEEKGISPKYLEISCEKAKIPAIKGISSLNVSVACGVIL 238 Query: 274 YITQNHFA 281 Y Sbjct: 239 YEVFRQRK 246 >gi|21242319|ref|NP_641901.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] gi|52783317|sp|Q8PM64|RLMB_XANAC RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|21107751|gb|AAM36437.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] Length = 249 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ GV+ V++++ N + + ++L KN + V+ V Q +D + G Sbjct: 7 WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALDGVGG 66 Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + A A L ++A L+++LD V DPHN+GA LRSA A Sbjct: 67 QVRHQGVAARYAAARLWAENELEGLVEAAAGRALVLILDGVQDPHNLGACLRSAAAAGVT 126 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S + +A + K+++GA + IP + ++NL L+ + G GL+ +++ L Sbjct: 127 AVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 187 YSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEAVRQR 246 >gi|297562009|ref|YP_003680983.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846457|gb|ADH68477.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 283 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 54/273 (19%), Positives = 100/273 (36%), Gaps = 22/273 (8%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-------------SRKIFQLL 72 K ++ +++ + G V AL + + ++ Sbjct: 10 RSPRIKGVRRLAKRT-FRQRERRFLAEGPQAVREALAAAVDGAQGRSPHGGAASGVVEVY 68 Query: 73 ATKNALARLDW--DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 AT A+ R DA P V + ++ +A + L+ V Sbjct: 69 ATAEAMQRHIDLVDAARAVDVPTHRVSLDVMSELAQTVTPQGVIA--VCEFVDVPLERVG 126 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + +L VL HV DP N G +LR+A A D +I T + ++++G+L H+P + Sbjct: 127 DVRLAAVLSHVRDPGNAGTVLRTADAAGADVVIFTDASVDPYNGKCVRASAGSLFHLPVV 186 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQE 246 + A+ + G + ++ L + + + G E GL +T Sbjct: 187 VGVPVARAVDFLRGVGARVWAADGSGQRDLHAVADSGDLDGPVGWVFGNEAWGLPEETVA 246 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + G ++LN++ AAAV LY T Sbjct: 247 LTDGAVSVPIYGGAESLNLATAAAVCLYTTARQ 279 >gi|332827501|gb|EGK00247.1| RNA methyltransferase, TrmH family, group 3 [Dysgonomonas gadei ATCC BAA-286] Length = 246 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 96/241 (39%), Gaps = 7/241 (2%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDK 103 E ++G+ V A+ ++ + L++ H V+ VP + +D+ Sbjct: 2 KEKEMIFGIRAVIEAIEAGKEIDKVIIRRELQGDLSKELLALLKSHDVAVQRVPNERLDR 61 Query: 104 IVGKEAVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K L L ++VLD + D N GAI R+ Sbjct: 62 FTRKNHQGVIAFLSAITYEKIEDIVPFLYENGKDPFILVLDGITDVRNFGAIARTCEVAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 + I+ + S + +A K+++GAL IP + NLT A+Q + + G + + S Sbjct: 122 VNAIVIPAKGSVTVNADAVKTSAGALLKIPVCKEPNLTSAIQFLRNSGIKVVAASERGAD 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + IA ++GAE G+ + A ++ + G I +LNVS AA V +Y Sbjct: 182 IYTEIDYTGPIAFVMGAEDVGVANENLRIADNLVKIPQFGTIGSLNVSVAAGVLIYEVIR 241 Query: 279 H 279 Sbjct: 242 Q 242 >gi|239501022|ref|ZP_04660332.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB900] Length = 258 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 59/258 (22%), Positives = 99/258 (38%), Gaps = 9/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K ++ + + + + L G H A L +K+F L T+ AL D Sbjct: 8 SKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDL 66 Query: 84 DANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + H V + + L+ L T + S ++L++V Sbjct: 67 KKIIELHQGHVFIISEVLYKDLSTLGNT---LSCLAIIDLPKTASTIDYSVDTLILENVQ 123 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G +LRSA A + II T+ + S + ++ GA + LTD L K Sbjct: 124 DPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKF 183 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 F T S S + + ILG EG+G E A + PG ++ Sbjct: 184 DIPVFVTSSHRSTSLYSKD---LSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQES 239 Query: 263 LNVSNAAAVALYITQNHF 280 LNV+ A ++ + Sbjct: 240 LNVAIAGSICFFEMVRQR 257 >gi|289663083|ref|ZP_06484664.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670071|ref|ZP_06491146.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 249 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ GV+ V++++ N + + ++L KN + V+ V Q +D + G Sbjct: 7 WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALDGVGG 66 Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + A A L ++A L+++LD V DPHN+GA LRSA A Sbjct: 67 QVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVT 126 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S + +A + K+++GA + IP + ++NL L+ + G GL+ +++ L Sbjct: 127 AVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 187 YSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEVVRQR 246 >gi|254512223|ref|ZP_05124290.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae bacterium KLH11] gi|221535934|gb|EEE38922.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae bacterium KLH11] Length = 257 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 94/252 (37%), Positives = 141/252 (55%), Gaps = 7/252 (2%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 K +++R + E ++L+G+H V AL NP R+ +L+ T+NA +L Sbjct: 5 KWVVAKEQARKVAAAETVWLFGLHAVRDALMNPKRQKLRLIVTRNAGDKLVEAIEFA-GI 63 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL---DAVRNSQLLMVLDHVNDPHNIG 148 + P+ + +VHQG ALE PL L R +++LD V DPHN+G Sbjct: 64 TPEIADPRKFTAPIDPGSVHQGAALEVKPLEWGGLAENCIGREHPRVLLLDRVTDPHNVG 123 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AILRSA +I T+ +S E+ LAK+ASGALE PY+R+ NL DA+ ++ + GF Sbjct: 124 AILRSAEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRVRNLADAIVELQNMGFL 183 Query: 209 TIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +GL ++ +E ++ +AL+LGAEG GLR KT+ET + + G +LNV Sbjct: 184 VLGLDGEADDTIESSLGGDRDRPVALVLGAEGPGLRQKTKETVDQLVKIDAAGGFGSLNV 243 Query: 266 SNAAAVALYITQ 277 SNAAA+ALY ++ Sbjct: 244 SNAAAIALYASK 255 >gi|227519879|ref|ZP_03949928.1| RNA methyltransferase [Enterococcus faecalis TX0104] gi|227072673|gb|EEI10636.1| RNA methyltransferase [Enterococcus faecalis TX0104] Length = 258 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 95/238 (39%), Gaps = 3/238 (1%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + + G H V A+ + + L + W A + V + + Sbjct: 23 YREELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTWLAEQETE-KLIFVSDEVL 81 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + LA+ T + + LL+ D++ DP N+G ++R+A A G Sbjct: 82 NSLSELPTSQGILAIVTLETQQEQSLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAG 139 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + + + +S G+ H+P ++ +++ Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYY 199 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ + ALILG EG G+ P+ T ++ M G ++LNV+ AA V ++ QN+ Sbjct: 200 EQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFQNN 257 >gi|325280595|ref|YP_004253137.1| RNA methyltransferase, TrmH family, group 3 [Odoribacter splanchnicus DSM 20712] gi|324312404|gb|ADY32957.1| RNA methyltransferase, TrmH family, group 3 [Odoribacter splanchnicus DSM 20712] Length = 247 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 12/246 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDANLPHPFPVKTVPPQTID 102 + + ++G+ V A+ +L + L + + P + VP Sbjct: 3 KYKQECIFGIRAVIEAIQQEKEIDKVMLKQGVRGELFQQLFSLIRERNIPFQYVPEDVFK 62 Query: 103 KIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 HQG+ E +P+ L +A +++LD V D N GAI+RSA Sbjct: 63 PFAD--RNHQGVLAEISPVPYQDLTEVLDGVEAAGRVPFVLILDRVTDVRNFGAIVRSAE 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSWGFQTIGLSS 214 D +I + S S+ K+++GAL H+P R+ N + G + + Sbjct: 121 CAGVDVVIIPNKNSAKISSDALKTSAGALYHVPVCRVLNLKRVVRELKFQRGIRVYAATE 180 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++K A+I+G+E KG+ + AT + G I++LNVS AAAV L+ Sbjct: 181 KAEKFYTGADLTLPTAIIMGSEDKGIDEELINIATDCIKIPQKGQIESLNVSAAAAVLLF 240 Query: 275 ITQNHF 280 Sbjct: 241 EVVRQR 246 >gi|296119687|ref|ZP_06838245.1| putative rRNA methylase [Corynebacterium ammoniagenes DSM 20306] gi|295967570|gb|EFG80837.1| putative rRNA methylase [Corynebacterium ammoniagenes DSM 20306] Length = 267 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 102/257 (39%), Gaps = 5/257 (1%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +S + + G ++V AA++ + + T+ A + Sbjct: 14 PRIVNAAKLH-RSSARKKANAFIVEGDNSVDAAVSTGAATD--VFVTERAADKFADIVTA 70 Query: 88 PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V + + + + AL T L S +LL V ++P Sbjct: 71 AGYMDVYVHPITDRAAKSLSDTQTTMGIFALCTPVLWSAGKILNGKPKLLSVPVETSEPG 130 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G ++R++ A DG+I + ++++++G+L HIP R +N+ D L K+ + Sbjct: 131 NAGTLIRTSDAMGADGVIFAGETVDPLGSKVSRASAGSLFHIPTARDTNIKDVLGKLRAS 190 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 Q + + L++ A + G E GL + + A + + G ++LN+ Sbjct: 191 NLQILATAPQGDATLDEVDLTKPTAWLFGNEAHGLSQELLDAADIRVSIPLRGRAESLNL 250 Query: 266 SNAAAVALYITQNHFAK 282 + AA++ LY + K Sbjct: 251 ATAASICLYESAKAQNK 267 >gi|58581707|ref|YP_200723.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623620|ref|YP_450992.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58426301|gb|AAW75338.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367560|dbj|BAE68718.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 255 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 113/240 (47%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ GV+ V++++ N + + ++L KN + V+ V Q +D + G Sbjct: 7 WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALDGVGG 66 Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + A L ++A L+++LD V DPHN+GA LRSA A Sbjct: 67 QVRHQGVAARYAVARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVT 126 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S S +A + K+++GA + IP + ++NL L+ + G GL+ +++ L Sbjct: 127 AVVIPKDKSASVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 187 YSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEVVRQR 246 >gi|325695046|gb|EGD36949.1| SpoU rRNA methylase [Streptococcus sanguinis SK150] Length = 246 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 55/277 (19%), Positives = 107/277 (38%), Gaps = 31/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + K H+ K R++ + + G H A Sbjct: 1 MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +++ + I ++ A RL + V V P+ + + + +A Sbjct: 40 VSSGAELI-RIFALAEYAERLADFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 92 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L+ V DP N+G I+R+A A DG+ ++ + + +S Sbjct: 93 REEIPAELSGRY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISRLSADIYNLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P RI S S + + + AL++G EG+G+ Sbjct: 150 QGSHFHLPVYRIDTADFIRLAQSSSLPILASTLSSTSIDYREVDSKESFALVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P+ A + H+ M G ++LNV+ AA + ++ + Sbjct: 210 SPEMTAAADILVHISMKGQAESLNVAVAAGILIFHLR 246 >gi|226952113|ref|ZP_03822577.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] gi|226837141|gb|EEH69524.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] Length = 258 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 95/257 (36%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K ++ + + + + L G H A L +KIF L T+ ALA D Sbjct: 8 SKDNAKIKHLRGLIELNSARKKHQQTVLEGSHLCIAWLQQ-QKKIFSLFTTEQALAHTDL 66 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + V + + K + + + L++ +++ D Sbjct: 67 QNVMELHQGHVFVISEVLYKDLSTLGTTLPCLAIIDLPKTASTIDFSVDTLIL--ENIQD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LRSA A + I+ T+ + S + ++ GA + L + L K Sbjct: 125 PGNVGTLLRSAAAANIKQIVCTQGSATLWSPRVLRAGMGAHFSLNCFENFQLNEILPKFQ 184 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F T S S + ILG EG+G E A + PG ++L Sbjct: 185 IPVFVTSSHRSTSLYSKD---LTQPCVWILGNEGQGASEYALEHA-QAVTIPQPGGQESL 240 Query: 264 NVSNAAAVALYITQNHF 280 NV+ A ++ + Sbjct: 241 NVAIAGSICFFEMVRQR 257 >gi|56808573|ref|ZP_00366304.1| COG0566: rRNA methylases [Streptococcus pyogenes M49 591] Length = 245 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 97/231 (41%), Gaps = 10/231 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + ++ + G H A + + + + RL + L V PQ + + Sbjct: 22 HRKQSYLIEGWHLFEEAQKSG-QVFRHIFVLEEMAERLAGEQEL------VIVSPQVLKE 74 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + + +A P L+ D +VL+ V DP N+G I+R+A A DG+ Sbjct: 75 LTDSPSPQGIVAEVEIPKLAFPSDYKGKY---LVLEDVQDPGNLGTIIRTADAARFDGVF 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +++ + + +S G+ H+P R + + S + Sbjct: 132 LSEKSADIYNQKTLRSMQGSHFHLPIWRTNVYQLCRELQEHKTPILATTLSKKSVDYKSL 191 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++++AL+LG EG+G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242 >gi|229494432|ref|ZP_04388195.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus erythropolis SK121] gi|229318794|gb|EEN84652.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus erythropolis SK121] Length = 323 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 11/238 (4%) Query: 53 GVHTVSAALNNP--SRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 G + V L + ++ + T+ + + + VP +D++ Sbjct: 84 GRNPVVECLRAGVPATALWVAVGTESDDRLKESVQLAADAGISILEVPRTDLDRLSA-NG 142 Query: 110 VHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +HQG+AL+ P D LL+ LD++ DP N+GA++RS AF G+ Sbjct: 143 LHQGIALQVPPYRYAHPDDLLSEARKHAEPPLLVALDNITDPRNLGAVVRSVAAFGGHGV 202 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + +R S S SAV ++++GA +P R +NLT L+ S G Q +GL ++ L+ Sbjct: 203 VIPERRSASVSAVAWRTSAGAAARLPIARATNLTRTLKDWASKGVQVVGLDAEGDTTLDD 262 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +++G+EGKGL +E ++ + M G +++LN S AA V L Sbjct: 263 FDGSGPVVIVVGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVAAGVVLADIARRR 320 >gi|166711529|ref|ZP_02242736.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 249 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++ GV+ V++++ N + + ++L KN + V+ V Q +D + G Sbjct: 7 WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALDGVGG 66 Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + A A L ++A L+++LD V DPHN+GA LRSA A Sbjct: 67 QVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVT 126 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K S S +A + K+++GA + IP + ++NL L+ + G GL+ +++ L Sbjct: 127 AVVIPKDKSASVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L+LG E GLR T+E + + MPG I++LNVS A V L+ Sbjct: 187 YSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEVVRQR 246 >gi|291571381|dbj|BAI93653.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis NIES-39] Length = 312 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 73/256 (28%), Positives = 118/256 (46%), Gaps = 13/256 (5%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANL 87 + + S T PE +YG HTV AAL N R + ++ + + Sbjct: 38 RRRDRPVASAETEPPEEDLIYGRHTVLAALENG-RSLNRVWVISQLRSDTRFQPLLQEAK 96 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDH 140 V Q +D+I + A HQG+ + P L + + +L+ +D Sbjct: 97 AKGAIVDGASYQRLDQIT-RGASHQGIVAQVTPYKYWDLTTLITQAKSANSQPVLVAVDG 155 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DPHN+GAI+R+A A G+I +R + +A + K A+GALE P R+ NL Sbjct: 156 ITDPHNLGAIIRTAEAIGAQGLILPQRRAVGINATVMKVAAGALETFPVARVINLNRTFT 215 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 ++ S GF G + +PL + + I L++G+EG+GL E + + + G+ Sbjct: 216 ELKSAGFWIYGTVAGEYQPLYKADLSGAIVLVVGSEGEGLSHAIAENCDVLLSIPLSGVT 275 Query: 261 KALNVSNAAAVALYIT 276 +LNVS A +ALY Sbjct: 276 PSLNVSVATGMALYEI 291 >gi|284053857|ref|ZP_06384067.1| RNA methyltransferase [Arthrospira platensis str. Paraca] Length = 307 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 73/256 (28%), Positives = 118/256 (46%), Gaps = 13/256 (5%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANL 87 + + S T PE +YG HTV AAL N R + ++ + + Sbjct: 38 RRRDRPVASAETEPPEEDLIYGRHTVLAALENG-RSLNRVWVISQLRSDTRFQPLLQEAK 96 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDH 140 V Q +D+I + A HQG+ + P L + + +L+ +D Sbjct: 97 AKGAIVDGASYQRLDQIT-RGASHQGIVAQVTPYKYWDLTTLITQAKSANSQPVLVAVDG 155 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DPHN+GAI+R+A A G+I +R + +A + K A+GALE P R+ NL Sbjct: 156 ITDPHNLGAIIRTAEAIGAQGLILPQRRAVGINATVMKVAAGALETFPVARVINLNRTFT 215 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 ++ S GF G + +PL + + I L++G+EG+GL E + + + G+ Sbjct: 216 ELKSAGFWIYGTVAGEYQPLYKADLSGAIVLVVGSEGEGLSHAIAENCDVLLSIPLSGVT 275 Query: 261 KALNVSNAAAVALYIT 276 +LNVS A +ALY Sbjct: 276 PSLNVSVATGMALYEI 291 >gi|324993655|gb|EGC25574.1| SpoU rRNA methylase [Streptococcus sanguinis SK405] gi|327462924|gb|EGF09245.1| SpoU rRNA methylase [Streptococcus sanguinis SK1] gi|327474528|gb|EGF19933.1| SpoU rRNA methylase [Streptococcus sanguinis SK408] Length = 246 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 102/277 (36%), Gaps = 33/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + K H+ K R++ + + G H A Sbjct: 1 MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETA 119 +++ + I L A F V V + + + + +A Sbjct: 40 VSSGAELIRI--------FALAEYAEQLADFSLVIFVSSEILADLADSKTPQGIVAEVAF 91 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L+ + L+ V DP N+G I+R+A A DG+ ++ + + +S Sbjct: 92 ERKEIPLELSGRY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISQLSADIYNLKTLRS 148 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P R+ S S + + L++G EG+G Sbjct: 149 MQGSHFHLPVYRMDTADFIRLAQSSRLPILASTLSSTSIDYRNVDSKESFVLVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + P+ E A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISPEMTEAADVLVHISMKGQAESLNVAVAAGILIFHL 245 >gi|262374017|ref|ZP_06067294.1| rRNA methylase [Acinetobacter junii SH205] gi|262311028|gb|EEY92115.1| rRNA methylase [Acinetobacter junii SH205] Length = 249 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 104/241 (43%), Gaps = 12/241 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 YGVH+V + L ++ L K RL L V+ +++K+ G Sbjct: 8 YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILALAEPFGISVQKASRDSLEKLAGMP 67 Query: 109 AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ P + L LL+ LD V DPHN+GA +R+A A + Sbjct: 68 -FHQGVVAAVRPHPTLNEKDLDQLMQQHPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPL 220 I + S S + K A+G E + +I+++NL K + + + P+ Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHTRVIGTMLDEKALPI 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +Q + + +++GAE GLRP TQ + M G +++LNVS A +ALY Sbjct: 187 QQCDFSGSVVIVMGAEDTGLRPITQSQCDQTVFIPMAGDLQSLNVSVATGMALYEACRQR 246 Query: 281 A 281 Sbjct: 247 T 247 >gi|207723369|ref|YP_002253768.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2] gi|206588568|emb|CAQ35531.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2] Length = 245 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 95/249 (38%), Gaps = 8/249 (3%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHPF 91 M+ + ++ + L G+H V+A L+ L++ ++ A + P Sbjct: 1 MKVLSGSTQQRRRAGQSVLDGIHLVAAYLDAGHTPAQCLVSERHLAHPEVAPLLARVDPQ 60 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 V + ++ V G+ L R ++LD + D N+G+IL Sbjct: 61 HVILLADSLFAQLT---TVVNGIDLMAVIDTPEGHLPHRIEHDCVILDGIQDAGNVGSIL 117 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R A A + T + + SA ++ GA H+ + ++H + Sbjct: 118 RCAAAAGVRDVFMTTGCAFAWSAKTLRAGMGAHFHLNIVEHCTFESMHARLHVPL---LA 174 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 SS ++ + + + G EG G+ + T+ + PG +++LNV+ AAA+ Sbjct: 175 TSSHARHAVFDVPLGKPVGWVFGNEGAGVSEQWLS-VTTPISIPQPGGMESLNVAAAAAI 233 Query: 272 ALYITQNHF 280 L+ Sbjct: 234 CLFEAVRQR 242 >gi|325954869|ref|YP_004238529.1| RNA methyltransferase, TrmH family, group 3 [Weeksella virosa DSM 16922] gi|323437487|gb|ADX67951.1| RNA methyltransferase, TrmH family, group 3 [Weeksella virosa DSM 16922] Length = 249 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++G+ + A+ + K+F + + + P VP + ++++ G Sbjct: 7 IFGLRPIIEAIESGKTIDKLFVQKGLQGEIFSQLRKLIAQYEIPTSYVPVEKLNRLTG-- 64 Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ +P+ +++ + L++LD V+D N GAI R+A D Sbjct: 65 KNHQGVYAFLSPIEFDSIENVLPQIYERGKTPFLLILDRVSDVRNFGAIARTAECVGIDA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II + S S +A K+++GAL +IP + +NL + + G S S L Sbjct: 125 IIIPYKGSASVNADAVKTSAGALYNIPICKENNLKKTVDYLQQSGIVLAAASEKSDTYLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A+I+G+E G+ + + + L M G +LNVS A LY Sbjct: 185 DVDFTTPLAIIMGSEEDGVSDALLKVSDYIIKLPMAGQTASLNVSVACGAILYEAVRQR 243 >gi|283769306|ref|ZP_06342206.1| RNA methyltransferase, TrmH family, group 3 [Bulleidia extructa W1219] gi|283104082|gb|EFC05465.1| RNA methyltransferase, TrmH family, group 3 [Bulleidia extructa W1219] Length = 237 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 100/237 (42%), Gaps = 10/237 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++YG + V ++ L ++ L PV+ + + +V + Sbjct: 3 EWIYGKNVVKQSIEEGMVLKLILQRKEDPLF----VLAQEKQIPVEILDRHKMTSLVKSD 58 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 A + + V + L+++LD + DPHN+GAILR+ A DG+I Sbjct: 59 RHQGVAAQIRNYTIYSVEEIVTSIPKGKDGLIVMLDGIVDPHNLGAILRTCDAVGADGVI 118 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K S +A +AK + GA++ + ++NL+ ++ + G+ + ++ K Sbjct: 119 FKKDRSVGLNATVAKVSVGAIQTVKCASVTNLSQTIEWLKKRGYWVV-GTAMEGKDYRSL 177 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L++G EGKG+ + HL M G I +LN S + + LY N Sbjct: 178 KYDYPTVLVIGNEGKGISSLVMKHCDYRVHLPMVGKISSLNASVSTGILLYEIYNKR 234 >gi|157373892|ref|YP_001472492.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sediminis HAW-EB3] gi|157316266|gb|ABV35364.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sediminis HAW-EB3] Length = 246 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 108/238 (45%), Gaps = 10/238 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +G+H V A L + ++ ++ + + V+T + +D+ Sbjct: 8 FGIHAVEAVLKHSPERVIEMWVQAGRDDQRLATLLQMAAEYGVSVQTSARKVLDEKSD-N 66 Query: 109 AVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ + L + ++LD V DPHN+GA LR+A A G+ Sbjct: 67 GQHQGVLARVKAVKQLNDNDLLALVEKTETPFFLILDGVTDPHNLGACLRNADAAGVHGV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + S + ++K A GA E +P +++NL ++ + G +G + ++ L + Sbjct: 127 IVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKSLQDKGVWIVGAAGEADSDLYK 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A+ +GAE KGLR T+E+ S+A + M G + +LNVS A+ + L+ Sbjct: 187 TDLKGSLAIAMGAEDKGLRRLTRESCDSIASIPMSGSVSSLNVSVASGICLFEAVRQR 244 >gi|226304179|ref|YP_002764137.1| RNA methyltransferase [Rhodococcus erythropolis PR4] gi|226183294|dbj|BAH31398.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4] Length = 325 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 11/238 (4%) Query: 53 GVHTVSAALNNP--SRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 G + V L + ++ + T+ + + + VP +D++ Sbjct: 86 GRNPVVECLRAGVPATALWVAVGTESDDRLKESVQRAADAGISILEVPRSDLDRLSA-NG 144 Query: 110 VHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +HQG+AL+ P D LL+ LD++ DP N+GA++RS AF G+ Sbjct: 145 LHQGIALQVPPYRYAHPDDLLSEARKHAEPPLLVALDNITDPRNLGAVVRSVAAFGGHGV 204 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + +R S S SAV ++++GA +P R +NLT L+ S G Q +GL ++ L+ Sbjct: 205 VIPERRSASVSAVAWRTSAGAAARLPIARATNLTRTLKDWASKGVQVVGLDAEGDTTLDD 264 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +++G+EGKGL +E ++ + M G +++LN S AA V L Sbjct: 265 FDGSGPVVIVVGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVAAGVVLADIARRR 322 >gi|29839982|ref|NP_829088.1| spoU rRNA methylase family protein [Chlamydophila caviae GPIC] gi|29834329|gb|AAP04966.1| spoU rRNA methylase family protein [Chlamydophila caviae GPIC] Length = 265 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 90/263 (34%), Gaps = 13/263 (4%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 +N+ K++ + ++SR P L G + ALN+ ++ +N + Sbjct: 6 KNNPKVKEVVAL-KQSRSRKGP-LFLLEGFREIQKALNSGYE-CERIFCGENVSEKEQSF 62 Query: 85 ANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMV 137 N P++ + + K+ H + + + ++ Sbjct: 63 LNRIQKTPLEKIYCSEEILSKLS--YKEHHDNFIAVMKKRWWSREEFLGQKKNPLPFYLI 120 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 ++ V P N+GAILR A DG+I + + +S+ G + +P + Sbjct: 121 IEQVEKPGNVGAILRIADGVGADGVILCDPIVDLYNPNVIRSSLGTVFTLPIWSATLDEV 180 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 + E N +AL+ G+E GL + + L M Sbjct: 181 LQTIAEEKWQVFATS-PRASTMYFCENYNQPLALVFGSEKDGLTSHWLKGNFAKISLPML 239 Query: 258 GIIKALNVSNAAAVALYITQNHF 280 G + +LN+S A + Y Sbjct: 240 GQVDSLNLSTAVSAVAYEVIRQR 262 >gi|183982465|ref|YP_001850756.1| 23S rRNA methyltransferase TsnR [Mycobacterium marinum M] gi|183175791|gb|ACC40901.1| 23S rRNA methyltransferase TsnR [Mycobacterium marinum M] Length = 275 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 87/249 (34%), Gaps = 5/249 (2%) Query: 35 SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94 + Q+ + G + V AA I +L T+ A R + PV Sbjct: 27 AKLQRHVGRRRTSRFLAEGPNLVEAA--AARGLIRELYVTEAAEQRHEPLLAR-QDAPVY 83 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 V + + +A+ P +L+ V + +P N G ++R A Sbjct: 84 VVTERAAKALSDTVTPSGLVAVCEMPTTGLAEVLSGAPRLVAVAVEIGEPGNAGTLIRIA 143 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGL 212 A + ++ + ++++G++ IP I + + A + L Sbjct: 144 DAMGANAVVLAGNSVDPYNGKCLRASAGSIFAIPVIVAPDTSAALGALRGAGLQVLASVL 203 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + ++ A + G E GL + A + M G ++LNV+ AAA+ Sbjct: 204 DGEKSLDDIDQLLEAPTAWLFGPEAHGLSAEVAAAAHHRVRIPMSGGAESLNVAAAAAIC 263 Query: 273 LYITQNHFA 281 LY + + Sbjct: 264 LYQSARALS 272 >gi|297623842|ref|YP_003705276.1| RNA methyltransferase [Truepera radiovictrix DSM 17093] gi|297165022|gb|ADI14733.1| RNA methyltransferase, TrmH family, group 3 [Truepera radiovictrix DSM 17093] Length = 241 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 13/242 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG V+ AL + +L + ++ VP +D+ + Sbjct: 2 LIYGKQAVAEALREGG--VLRLFVAHGVQPGTVKQFEALARKAGVTLERVPRTQLDQAL- 58 Query: 107 KEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K HQG+ E L + LL++LD + DPHN GAI+RSA Sbjct: 59 KTTRHQGVVAELPELSYADPEAPFTRAARRGEKPLLVLLDGITDPHNYGAIIRSAEVLGA 118 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G++T +R S SAV+AK ++GA H+P +++ NL ++ + + G G S D+ Sbjct: 119 HGVVTEERRSAPLSAVVAKVSAGASSHLPLVQVKNLPRYMEALKARGVWLYGASGDAAAL 178 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +Q + AL++GAEG G+R +ET + + M G + +LN S AA + LY + Sbjct: 179 PQQLDWDRPAALVIGAEGAGMRRLVRETCDELVAIPMRGQVASLNASVAAGILLYAALSS 238 Query: 280 FA 281 + Sbjct: 239 RS 240 >gi|300772566|ref|ZP_07082436.1| TrmH family RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861] gi|300760869|gb|EFK57695.1| TrmH family RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861] Length = 249 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 88/246 (35%), Gaps = 9/246 (3%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + + Q + Q + G+ +V+ L++ + L T N ++ +PH Sbjct: 9 LITSLQHKKFRKQHGLFVVEGIKSVTEFLSSAYD-VHALFYTANVTTKV---VKIPHNIK 64 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + KI ++ LAL P +Q +VLD V DP N+G I+R Sbjct: 65 SYELTDNEFSKISQLKSPQGILALVRLPKEKTPEQLDFANQFTLVLDDVQDPGNLGTIIR 124 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A F I+ + + + + ++ G+L + + Sbjct: 125 TAEWFGFKHIVCSAGTVDAYNPKVVQATMGSLSRTQIHYTDLESFIRTVRLPVFGALLDG 184 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 +S + +E +++G EG G+ K + + G ++LNV+ A + Sbjct: 185 TSIYETRWGKEGL-----ILMGNEGNGISEKLLDLIDHAVTIPRTGQAESLNVAVATTIF 239 Query: 273 LYITQN 278 Sbjct: 240 CNEIAR 245 >gi|326332067|ref|ZP_08198352.1| RNA methyltransferase, TrmH family, group 3 [Nocardioidaceae bacterium Broad-1] gi|325950205|gb|EGD42260.1| RNA methyltransferase, TrmH family, group 3 [Nocardioidaceae bacterium Broad-1] Length = 318 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 65/258 (25%), Positives = 108/258 (41%), Gaps = 21/258 (8%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKT 95 R + + ++ G ++V AL + + + A R + + Sbjct: 63 PRKRAAGDAEWIIGRNSVVEALRED-VPVNGIYVAEGAERDGRLREAFLLASEKGISLLE 121 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIG 148 V +D++ G HQGLA D + L++ LD V DP N+G Sbjct: 122 VTKVELDRLTGFNG-HQGLAARIPAYEYAHADDLIDRAAEIGEKPLIVALDQVTDPRNLG 180 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+RSA AF G++ +R + +A K+++GA IP + NLT L+ G Sbjct: 181 AIVRSAAAFGAHGVVIPERRAAGMTAAAWKTSAGAASRIPVAQTVNLTRQLKAYQDAGCM 240 Query: 209 TIGLSSDSKKPLEQEIKND-----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 +GL + L + D + +++GAEG GL QET + + M +++L Sbjct: 241 VVGLDMEGDITLPELGAPDGLADGPLVIVVGAEGGGLSRLVQETCDQIVSIPMANSVESL 300 Query: 264 NVSNAAAVALY---ITQN 278 N AA+V LY + Sbjct: 301 NAGVAASVVLYAVAEARR 318 >gi|118617269|ref|YP_905601.1| 23S rRNA methyltransferase TsnR [Mycobacterium ulcerans Agy99] gi|118569379|gb|ABL04130.1| 23S rRNA methyltransferase TsnR [Mycobacterium ulcerans Agy99] Length = 275 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 87/249 (34%), Gaps = 5/249 (2%) Query: 35 SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94 + Q+ + G + V AA I +L T+ A R + PV Sbjct: 27 AKLQRHVGRRRTSRFLAEGPNLVEAA--AARGLIRELYVTEAAEQRHEPLLAR-QDAPVY 83 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 V + + +A+ P +L+ V + +P N G ++R A Sbjct: 84 VVTERAAKALSDTVTPSGLVAVCEMPTTGLAEVLSGAPRLVAVAVEIGEPGNAGTLIRIA 143 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGL 212 A + ++ + ++++G++ IP I + + A + L Sbjct: 144 DAMGANAVVLAGNSVDPYNGKCLRASAGSIFAIPVIVAPDTSAALGALRGAGLQALASVL 203 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + ++ A + G E GL + A + M G ++LNV+ AAA+ Sbjct: 204 DGEKSLDDIDQLLEAPTAWLFGPEAHGLSAEVAAAAHHRVRIPMSGGAESLNVAAAAAIC 263 Query: 273 LYITQNHFA 281 LY + + Sbjct: 264 LYQSARALS 272 >gi|294101781|ref|YP_003553639.1| RNA methyltransferase, TrmH family, group 3 [Aminobacterium colombiense DSM 12261] gi|293616761|gb|ADE56915.1| RNA methyltransferase, TrmH family, group 3 [Aminobacterium colombiense DSM 12261] Length = 298 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 67/291 (23%), Positives = 125/291 (42%), Gaps = 15/291 (5%) Query: 1 MNLISKKKSEKIFSLK---DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTV 57 M+ ++ + K S K K R N + Y K + + + Q + ++G V Sbjct: 1 MSAKQRRDNSKPDSKKPYSRKMENKKRENQKPYGK-KPYIKMPDVRKQIDEDLIWGRQPV 59 Query: 58 SAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 L +K ++ ++ A + P + V +D++ E HQG Sbjct: 60 LDLLQYSPQKCLKVWISERAHPSFSGEVMTLARSTKVPFQKVASTLVDEMCPGE-NHQGA 118 Query: 115 ALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + + L LL+VLDH+ DPHN+GAI+R++ A ++ +KR Sbjct: 119 VAKITMVEQLDMEDFLPTLKTKEGPILLVVLDHILDPHNLGAIIRTSEAAGATAVVYSKR 178 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + K ++GA +P I ++N+ + ++ GF +GL ++ + L D Sbjct: 179 RSALPGGTVVKVSAGAALRVPMISVTNIAQTITRLQEEGFWVVGLDHNAPQSLWGATYPD 238 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K +L++GAEG+GL + + + + G +LN AAA+ ++ Sbjct: 239 KSSLVVGAEGEGLSRLVAQRCDMLLRIPITGKTGSLNAGVAAALGMFEWAR 289 >gi|86158008|ref|YP_464793.1| RNA methyltransferase TrmH, group 3 [Anaeromyxobacter dehalogenans 2CP-C] gi|85774519|gb|ABC81356.1| RNA methyltransferase TrmH, group 3 [Anaeromyxobacter dehalogenans 2CP-C] Length = 256 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 12/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +YGV+ V L + ++ + A V+ P +D++ Sbjct: 3 VVYGVNQVRELLRAGGGDVAEVWLAEGGTRGAAFAELERLGRGAGAKVRAAPRAKLDRLA 62 Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 G + HQG+ A L+ LL+VLD V DPHN+GAI+RSA A Sbjct: 63 GTDR-HQGVVAVVADFRYAELEDLLARAQASGRPPLLVVLDGVEDPHNLGAIIRSAHALG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++ + + + +AK+++GA+E P R++N+ L+++ G ++ ++D ++ Sbjct: 122 AHGVVIPRDRAVGVTPAVAKASAGAVERCPVARVTNVAKTLERLKEAGIWSVAFAADGER 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L + AL+LG+EG+GLRP + T A + M G + +L+VS +AAVALY Sbjct: 182 ALGEVDLKGPTALVLGSEGEGLRPLVRRTCDLSARIPMSGDLDSLSVSASAAVALYEAAR 241 Query: 279 HFA 281 A Sbjct: 242 QRA 244 >gi|238855653|ref|ZP_04645953.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 269-3] gi|260664905|ref|ZP_05865756.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii SJ-7A-US] gi|282933602|ref|ZP_06338971.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 208-1] gi|313472548|ref|ZP_07813038.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 1153] gi|238831719|gb|EEQ24056.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 269-3] gi|239529985|gb|EEQ68986.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 1153] gi|260561388|gb|EEX27361.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii SJ-7A-US] gi|281302257|gb|EFA94490.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 208-1] Length = 251 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 12/240 (5%) Query: 50 FLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIV 105 F++G H L N + KI ++ V+ VP +DK+V Sbjct: 8 FVFGRHAGIDFLKNESADKINKVFLQNGVQTEFANQVYGLAKKKHLIVQEVPKNKLDKLV 67 Query: 106 GKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A HQGL L + LD + + L++LD + DPHN+G+ILRSA A Sbjct: 68 -PDANHQGLVLAISSFEYADLDDLVEKIADKENPFLLMLDSIEDPHNLGSILRSADATGV 126 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 DGII KR + ++V+AK+++GA++H+P R++NL +++ G+ G + + + Sbjct: 127 DGIIIPKRRASGLTSVVAKTSTGAIDHVPVCRVNNLVQTTKELKKAGYWFFGTAMEGQDY 186 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + K K L++G EGKG+ P + + M G +++LN S A V LY N+ Sbjct: 187 RYWDTK-GKCVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLYQMLNN 245 >gi|212550772|ref|YP_002309089.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549010|dbj|BAG83678.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 274 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 57/278 (20%), Positives = 104/278 (37%), Gaps = 10/278 (3%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65 K + KI + S + + K +Q K+ + + G+ + +L + Sbjct: 2 KSYNNKISRIITSTH------NPRIKNIQKLRIKAYERKSQKLFIIEGIREFNLSL-VGN 54 Query: 66 RKIFQLLATKNALARLD--WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 + + L + + N+ + V KI +E LAL L Sbjct: 55 YILDSVYICFELLEKSNSSEIINIIPSNIIYEVSKAVFQKIACRENHQGILALAKPKLHL 114 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + N+ L++VL+ + P N+GAILR+A A D I + + + +S+ G Sbjct: 115 LADLNLSNNPLIIVLESIEKPGNLGAILRTAEAAKIDATIICNPSTDIYNPNVVRSSIG- 173 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 I +++ + L + S Q + K A+++GAE GL Sbjct: 174 CLFSNPIAVASNEETLAYLKSKSVQIFAAELTAFKQYYNTDFTSASAIVIGAEVNGLTNF 233 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + A + M GII +LNVS + A+ + Sbjct: 234 WLDNAHQRIKIPMQGIIDSLNVSVSVAIITFEAIRQRN 271 >gi|256833281|ref|YP_003162008.1| RNA methyltransferase, TrmH family, group 3 [Jonesia denitrificans DSM 20603] gi|256686812|gb|ACV09705.1| RNA methyltransferase, TrmH family, group 3 [Jonesia denitrificans DSM 20603] Length = 326 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 64/277 (23%), Positives = 121/277 (43%), Gaps = 15/277 (5%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQL-LA 73 A+ + K Q +S + + G + + AL + P+ +++ Sbjct: 50 KRKEAREKLEAAQEKHAQRRTNRSGSRA---VEVIAGRNAIVEALRSDMPADRLYVASRL 106 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----- 128 + + + V +D++ +VHQG+A+ +D Sbjct: 107 DHDDRTKEILEIATERGIAVVEATRPELDELTD-GSVHQGVAMGVPAYEYLEVDDLLDAA 165 Query: 129 --VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + LL+ LD V DP N+GAILR+ AF G+I +R + +A K ++GA Sbjct: 166 ASKGQAPLLIALDSVTDPRNLGAILRAGGAFGAHGVIVPERRAAGMTASAWKVSAGAAAR 225 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQ 245 +P R++NL +L+ + G +GL D+ + D + L++G+EGKGL + Sbjct: 226 VPVARVTNLVRSLEALKKSGCFVVGLDGDADSSVRDLPFAADPLVLVVGSEGKGLSRLVR 285 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ET ++A + + +++LN + AA + LY ++ Sbjct: 286 ETCDAIAAIPISTTVESLNAAVAAGITLYEVAAARSE 322 >gi|21909794|ref|NP_664062.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS315] gi|28896513|ref|NP_802863.1| 23S rRNA methyltransferase [Streptococcus pyogenes SSI-1] gi|306827961|ref|ZP_07461228.1| TrmH family RNA methyltransferase [Streptococcus pyogenes ATCC 10782] gi|21903979|gb|AAM78865.1| putative spoU rRNA Methylase family protein [Streptococcus pyogenes MGAS315] gi|28811767|dbj|BAC64696.1| putative rRNA methylase [Streptococcus pyogenes SSI-1] gi|304429880|gb|EFM32922.1| TrmH family RNA methyltransferase [Streptococcus pyogenes ATCC 10782] Length = 245 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 96/231 (41%), Gaps = 10/231 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + ++ + G H A + + + + RL + L V PQ + + Sbjct: 22 HRKQSYLIEGWHLFEEAQKSG-QVFRHIFVLEEMAERLAGEQEL------VIVSPQVLKE 74 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + + +A P L+ D +VL+ V DP N+G I+R+A A DG+ Sbjct: 75 LTDSPSPQGIVAEVEIPKLAFPSDYKGKY---LVLEDVQDPGNLGTIIRTADAARFDGVF 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +++ + + +S G+ H+P R + S + Sbjct: 132 LSEKSADIYNQKTLRSMQGSHFHLPIWRTDVYQLCRELQEYKTPILATTLSKKSVDYKSL 191 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++++AL+LG EG+G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242 >gi|291440681|ref|ZP_06580071.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291343576|gb|EFE70532.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 299 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 51/282 (18%), Positives = 96/282 (34%), Gaps = 11/282 (3%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI- 68 K+ S+ + + + +++ + G V A + + Sbjct: 9 PKVTSMAPAVPEPISSRSPRVLAARRLAKRN-FRGKERLFLAEGPQAVREAAAHREGPVP 67 Query: 69 --FQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 +L T A R V Q I I + + Sbjct: 68 TLVELFTTPEAAERYADIVGGARGAGARVHLASEQVIADISTTVTPQGLVGVCRFLDTPF 127 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 +L+ VL HV DP N G +LR A A + ++ T + +++ G+L Sbjct: 128 EQILAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSL 187 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGL 240 H+P + A+ + G + + + L+ E A + G E GL Sbjct: 188 FHLPVAIGVPVEQAVAGLRGTGVRVLAADGAGDRDLDDELDKGTMGGPTAWVFGNEAWGL 247 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HFA 281 +T+ ++ + + G ++LN++ AAAV LY + A Sbjct: 248 PEETRALTDAVVRVPIHGKAESLNLATAAAVCLYASARAQRA 289 >gi|190571500|ref|YP_001975858.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018903|ref|ZP_03334711.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357772|emb|CAQ55226.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995854|gb|EEB56494.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 255 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 134/243 (55%), Gaps = 9/243 (3%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVP 97 + + EN ++YG HT +AL N +R+ +LL T+N + + + V Sbjct: 2 KSSKANENCWIYGKHTCISALRNKNRRCIELLVTENFYREFEKEIKQCADSKGIKPRLVE 61 Query: 98 PQTIDKIVGKEAVHQGLALETAP-----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + + ++ K HQG+AL+ AP + + +S +++LD + D HNIG+ILR Sbjct: 62 NKMFNDVLPKGVNHQGIALKVAPIFHSLNIEEIAEGSGDSSTIVILDQITDTHNIGSILR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 ++ F+ D ++ +SPSE+A +AK+ASGAL+ +P I ++N+ ++ + G+ G Sbjct: 122 TSACFNIDALVLPHHHSPSENASIAKAASGALDIVPLIYVTNIVKTMESLKKIGYWCYGF 181 Query: 213 SSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++K+ +++ K +I G+E KG+R +E+ + + M +I +LNVSNAAA+ Sbjct: 182 DCNAKENIDEIKNFGQKRVIIFGSEEKGMRRLVKESCDYLLKIPMSNVIDSLNVSNAAAI 241 Query: 272 ALY 274 LY Sbjct: 242 GLY 244 >gi|115649674|ref|XP_782724.2| PREDICTED: similar to RNA methyltransferase like 1 variant [Strongylocentrotus purpuratus] gi|115931637|ref|XP_001192402.1| PREDICTED: similar to RNA methyltransferase like 1 variant [Strongylocentrotus purpuratus] Length = 449 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 48/329 (14%), Positives = 96/329 (29%), Gaps = 54/329 (16%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65 + I Y K + + + + ++ Q + L G ++ AL + + Sbjct: 114 SDDKDDIKGQDVPRYTKAGPDDKRLGRATMLAKSRKYREQSGKIILEGRRLITDALESGA 173 Query: 66 RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 R + + + L + + V + + + L+ Sbjct: 174 RADTIFFSQVSNIEGLPLAGSRVNLVKVAYKDISLWSDVSTPQGIVGVFQRPKHENLNLD 233 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + + + ++ D++ DP N+G ILRSA A +C I+ TK + +S +GA Sbjct: 234 QTSTDHLPVSLICDNIRDPGNLGTILRSAAAAACQKILLTKGCVDVWEPKVLRSGAGAHF 293 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK--------------------------- 218 +P I + I + Sbjct: 294 RVPIISNIPWNSLPNYLSPNRSVHIADCNYVHNDNSQTQSSHGASENQSEYAQNEYDNDD 353 Query: 219 -----------------------PLEQEIKNDKIALILGAEGKGLRPKTQETATS----M 251 AL++G E +GL + +E T Sbjct: 354 DISADHSKVMDETNAATDVRTVPYFSVNWTQGDYALVIGGETEGLSREAKELCTETGGRR 413 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M I +LN + A +V L+ + Sbjct: 414 IFIPMSMGIDSLNAAMATSVILFEAKRQL 442 >gi|313124317|ref|YP_004034576.1| RNA methyltransferase, trmh family, group 3 [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280880|gb|ADQ61599.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325685666|gb|EGD27748.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 249 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 74/245 (30%), Positives = 117/245 (47%), Gaps = 12/245 (4%) Query: 46 PENLFLYGVHTVSAALNN-PSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTI 101 N F++G H L N S KI ++ + AR + ++ VP + Sbjct: 4 TNNDFVFGRHAGIDFLKNQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKNKL 63 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 DK+ G E HQGL L A D + L++LD++ DPHN+G+ILRSA Sbjct: 64 DKLTGGE-NHQGLVLAVASFEYADFDQLLDKLDQEEAPFLLMLDNIEDPHNLGSILRSAD 122 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G+I KR + ++V+AK+++GA++H+P R++NL Q + G+ G + + Sbjct: 123 ATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTAME 182 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + N K L++G EGKG+ P + + M G +++LN S A V LY Sbjct: 183 GDDYRKWN-ANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLLYQ 241 Query: 276 TQNHF 280 N Sbjct: 242 AFNSR 246 >gi|312865883|ref|ZP_07726104.1| RNA methyltransferase, TrmH family [Streptococcus downei F0415] gi|311098287|gb|EFQ56510.1| RNA methyltransferase, TrmH family [Streptococcus downei F0415] Length = 252 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 51/274 (18%), Positives = 107/274 (39%), Gaps = 31/274 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + I K K R++ + G H A Sbjct: 7 MIIITSKANNLIKKTKKLLQKKHRKS---------------------TYLIEGWHLFEEA 45 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 N + + ++ L RL V V P+ + ++ + G+ E Sbjct: 46 SANGA-VFEHIFVLEDFLERLPNQE------KVVVVTPEVLKELSDSPSSQ-GIVAEVQM 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 S + + L++ + + DP N+G ++R+A A + + + + + ++ +S Sbjct: 98 DQSSLPETWQGPYLVL--EDIQDPGNLGTMIRTADAAAYQAVFISDKSADIYNSKTLRSM 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R S + ++ + + + AL++G EG+G+ Sbjct: 156 QGSHFHLPIYRGSMADFLASFKQAGVRILATTLAEDSMDYRKIERPESFALVMGNEGQGI 215 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +T + A + H+ MPG ++LNV+ AA + ++ Sbjct: 216 SEQTAKKADDLLHIDMPGQAESLNVAVAAGIMMF 249 >gi|332284294|ref|YP_004416205.1| RNA methyltransferase [Pusillimonas sp. T7-7] gi|330428247|gb|AEC19581.1| RNA methyltransferase [Pusillimonas sp. T7-7] Length = 264 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 56/284 (19%), Positives = 97/284 (34%), Gaps = 30/284 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN----LFLYGVHT 56 M IS R++ YK++ + R + + L G+H Sbjct: 1 MKHISS------------------RDNPLYKQLMRLARGKREKNADGRPAQHVLLEGIHL 42 Query: 57 VSAALNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 A L + L + L AN + P+ + V G Sbjct: 43 CQAWLQHMGEPELALFDLQRLETQTELQSLANALPAGLCHSCEPRLAAGLSQ---VEHGQ 99 Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 + + + R + + LD + DP N+G +LR+A A + + + SA Sbjct: 100 GVYFLVMAPAPVLPARITHNCLWLDRLQDPGNVGTLLRTAAAAGIQHAYLSTGCASAWSA 159 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + +SA GA + I D I + D +PL + A + G Sbjct: 160 KVLRSAQGAHF---VMTIHEHVDLAALRGCLAVPLIATALDDAQPLYDASLPAQCAWVFG 216 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 EG+G+ P A + +++LNV+ AA V L+ + Sbjct: 217 NEGQGVDPVLLAQADMRVFIPQAADVESLNVAVAAGVCLFEQRR 260 >gi|125718589|ref|YP_001035722.1| SpoU rRNA methylase family protein [Streptococcus sanguinis SK36] gi|125498506|gb|ABN45172.1| SpoU rRNA Methylase family protein, putative [Streptococcus sanguinis SK36] gi|324995033|gb|EGC26946.1| SpoU rRNA methylase [Streptococcus sanguinis SK678] Length = 246 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 56/276 (20%), Positives = 106/276 (38%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + K H+ K R++ + + G H A Sbjct: 1 MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +++ I ++ A RL + V V P+ + + + +A Sbjct: 40 VSSGEELI-RIFALAEYAERLGDFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 92 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + L+ V DP N+G I+R+A A DG+ + + + +S Sbjct: 93 REAIPAELSGRY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+ S S + + D AL++G EG+G+ Sbjct: 150 QGSHFHLPVYRMDTADFIRLAQSSSLPILASTLSSTSIDYREVDSKDSFALVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P+ E A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPEMTEAADVLVHISMKGQAESLNVAVAAGILIFHL 245 >gi|308176324|ref|YP_003915730.1| RNA methyltransferase [Arthrobacter arilaitensis Re117] gi|307743787|emb|CBT74759.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117] Length = 315 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 68/289 (23%), Positives = 122/289 (42%), Gaps = 28/289 (9%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPEN---------LFLYGVHTVSAALNNP---SRK 67 A+ R H+ Y + + +++S F+ G ++V AL Sbjct: 26 KAEDRPYHKAY-RAKQLSERSAAKRSTGRQADRIKVNAEFVTGRNSVVEALRAGIPAKAL 84 Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS---- 123 + + R P+ +D++ A+HQG+AL+ P Sbjct: 85 HVAIRIDVDDRVRESLKLAAEQGIPLMEASKPELDRMTD-AAIHQGMALQIPPYEYKDAV 143 Query: 124 ---------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 + L + LD + DP N+GAI+RSA AF DG+I +R S +A Sbjct: 144 QLATKAIKDFDKGYTKTQPLFLALDGITDPRNLGAIVRSASAFGADGVIIPERRSVGMTA 203 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALIL 233 K+++GA +P + +NLT AL+++ + G IGL + L + +++ Sbjct: 204 SAWKTSAGAAVRVPVAKCNNLTSALKEIKAAGIFVIGLDAGGDMDLPNFELATGPLCIVV 263 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G+EGKGL +E ++ + + +++LN S A ++LY A+ Sbjct: 264 GSEGKGLSRLVRENCDAIVSIPIDSAMESLNASMAVGISLYEVSRLRAE 312 >gi|154500722|ref|ZP_02038760.1| hypothetical protein BACCAP_04400 [Bacteroides capillosus ATCC 29799] gi|150270611|gb|EDM97920.1| hypothetical protein BACCAP_04400 [Bacteroides capillosus ATCC 29799] Length = 284 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 92/256 (35%), Gaps = 8/256 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + ++ ++R + ++ AL + + L+ K+ + Sbjct: 26 FTRLTEAQLRNRLEPEKGIFIAESPKVIARALEAGYQPLSLLMERKHLEGQGREIMERCG 85 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + G + L P+L + ++ + VL+ + D N+GA Sbjct: 86 DIPVYTGDNDLLAALTGYQVNRGILCAMRRPVLPTVEELCAGARRVAVLEGIVDSTNVGA 145 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH------ 203 I RSA A D ++ T + + G + IP+ RI + + Sbjct: 146 IFRSAAALHMDAVLVTPTCCDPLYRRAVRVSMGTVFQIPWTRIGDSPADWPEKGLSRLNA 205 Query: 204 --SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + DK+A++LG EG GL T + M + Sbjct: 206 LGFKTAAMALSDNSVSIDDPALMAEDKLAIVLGTEGDGLSHTTIAHCDYTVRIPMSHGVD 265 Query: 262 ALNVSNAAAVALYITQ 277 +LNV+ A+AVA + + Sbjct: 266 SLNVAAASAVAFWQLR 281 >gi|71902954|ref|YP_279757.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180] gi|71802049|gb|AAX71402.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180] Length = 245 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 97/231 (41%), Gaps = 10/231 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + ++ + G H A + + + + + RL + L V PQ + + Sbjct: 22 HRKQSYLIEGWHLFEEAQKSG-QVFRHIFVLEEMVERLAGEQEL------VIVSPQVLKE 74 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + + +A P L+ D +VL+ V DP N+G I+R+A A DG+ Sbjct: 75 LTDSPSPQGIVAEVEIPKLAFPSDYKGKY---LVLEDVQDPGNLGTIIRTADAARFDGVF 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +++ + + +S G+ H+P R + S + Sbjct: 132 LSEKSADIYNQKTLRSMQGSHFHLPIWRTDVYQLCRELQEYKTPILATTLSKKSVDYKSL 191 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++++AL+LG EG+G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242 >gi|19745515|ref|NP_606651.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS8232] gi|94989802|ref|YP_597902.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270] gi|94993688|ref|YP_601786.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750] gi|139474366|ref|YP_001129082.1| 23S rRNA methyltransferase [Streptococcus pyogenes str. Manfredo] gi|19747633|gb|AAL97150.1| putative rRNA methylase [Streptococcus pyogenes MGAS8232] gi|94543310|gb|ABF33358.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270] gi|94547196|gb|ABF37242.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750] gi|134272613|emb|CAM30880.1| SpoU rRNA Methylase family protein [Streptococcus pyogenes str. Manfredo] Length = 245 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 97/231 (41%), Gaps = 10/231 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + ++ + G H A + + + + + RL + L V PQ + + Sbjct: 22 HRKQSYLIEGWHLFEEAQKSG-QVFRHIFVLEEMVERLAGEQEL------VIVSPQVLKE 74 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + + +A P L+ D +VL+ V DP N+G I+R+A A DG+ Sbjct: 75 LTDSPSPQGIVAEVEIPKLAFPSDYKGKY---LVLEDVQDPGNLGTIIRTADAARFDGVF 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +++ + + +S G+ H+P R + S + Sbjct: 132 LSEKSADIYNQKTLRSMQGSHFHLPIWRTDVYQLCRELQEYKTPILATTLSKKSVDYKSL 191 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++++AL+LG EG+G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242 >gi|307325425|ref|ZP_07604627.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu 4113] gi|306888894|gb|EFN19878.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu 4113] Length = 277 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 96/261 (36%), Gaps = 12/261 (4%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + ++S + + G V A+ + ++ AT A R Sbjct: 12 PRVTAARRLAKRS-FRGKERRFIVEGPQAVREAIAY----LVEVYATPEAAERHADILAA 66 Query: 88 PH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV T + I ++ + L +L+ VL +V DP Sbjct: 67 ARAANLPVLTASDEVIAEMSDTVTPQGVVGLCRFLDSPFEEILRARPRLVAVLANVRDPG 126 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G +LR A A D ++ T + +++ G+L H+P + A+ + Sbjct: 127 NAGTVLRCADAAGADAVVLTDASVDPYNPKAVRASVGSLFHLPVAVGVPVERAVSGLREA 186 Query: 206 GFQTIGLSSDSKKPLEQEI----KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G + + ++ L+ E+ A I G E GL T+ A + + + G + Sbjct: 187 GARVLAADGAGERDLDSELDDRLLGAPTAWIFGNEAWGLPEATRALADEVVRVPIHGRAE 246 Query: 262 ALNVSNAAAVALYITQN-HFA 281 +LN++ AAAV LY + A Sbjct: 247 SLNLATAAAVCLYASARAQRA 267 >gi|300173701|ref|YP_003772867.1| putative TrmH family tRNA/rRNA methyltransferase [Leuconostoc gasicomitatum LMG 18811] gi|299888080|emb|CBL92048.1| Putative trmH family tRNA/rRNA methyltransferase TRMHL [Leuconostoc gasicomitatum LMG 18811] Length = 257 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 110/274 (40%), Gaps = 23/274 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M+ I ++ ++ + K R+ +R Y L G H V A Sbjct: 1 MDRILSNQNNRVKAWAKLATKKGRQENRTY-------------------LLDGWHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + K ++AT+ + D PH P + + I G QG+ E + Sbjct: 42 VKANA-KFHAVMATEEQMQTHLPDV--PHGVPAFEISEEVAKHIAG-TNTPQGIFAEISL 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + ++LD + DP N+G ++R+A A G++ + + + S + ++ Sbjct: 98 PDKTFDPSYVHDGAWLLLDKIQDPGNVGTLVRTADAAGFKGVVFGEGTADAYSPKVVRAM 157 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+ + + + ++S + + + + ALI+G EG+G+ Sbjct: 158 QGSQFHLEVLTGDLVEWTDALTANNLSVYGSQLNESARSYREIESSTQFALIVGNEGQGM 217 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + T+ ++ + G ++LNV+ A + ++ Sbjct: 218 SDELAAKTTANLYIPIQGQAESLNVAIAGGILMF 251 >gi|260495230|ref|ZP_05815358.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33] gi|260197287|gb|EEW94806.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33] Length = 234 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 105/226 (46%), Gaps = 4/226 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL N + I +L K + D + + ID G Sbjct: 4 IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKIDNSQGV 62 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + + L+++LD + DP N GAI+RSA F D II +R Sbjct: 63 AVYISNYDYYKDFDEAYEELVGKAKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPER 122 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + + K+++GA+E++ +++NL+D + K+ + G + ++ +E D Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEANINYNEEDYPD 182 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K+ L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 183 KVVLVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|209558854|ref|YP_002285326.1| Putative rRNA methylase [Streptococcus pyogenes NZ131] gi|209540055|gb|ACI60631.1| Putative rRNA methylase [Streptococcus pyogenes NZ131] Length = 245 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 98/231 (42%), Gaps = 10/231 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + ++ + G H A + + + + RL + L V PQ + + Sbjct: 22 HRKQSYLIEGWHLFEEAQKSG-QVFRHIFVLEEMAERLAGEQEL------VIVSPQVLKE 74 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 ++ + +A P L+ D +VL+ V DP N+G I+R+A A DG+ Sbjct: 75 LIDSPSPQGIVAEVEIPKLAFPSDYKGKY---LVLEDVQDPGNLGTIIRTADAARFDGVF 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +++ + + +S G+ H+P R + + S + Sbjct: 132 LSEKSADIYNQKTLRSMQGSHFHLPIWRTNVYQLCRELQEHKTPILATTLSKKSVDYKSL 191 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++++AL+LG EG+G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242 >gi|15674507|ref|NP_268681.1| 23S rRNA methyltransferase [Streptococcus pyogenes M1 GAS] gi|71910113|ref|YP_281663.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005] gi|94987928|ref|YP_596029.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429] gi|94991812|ref|YP_599911.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096] gi|13621609|gb|AAK33402.1| putative rRNA methylase [Streptococcus pyogenes M1 GAS] gi|71852895|gb|AAZ50918.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005] gi|94541436|gb|ABF31485.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429] gi|94545320|gb|ABF35367.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096] Length = 245 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 97/231 (41%), Gaps = 10/231 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + ++ + G H A + + + + + RL + L V PQ + + Sbjct: 22 HRKQSYLIEGWHLFEEAQKSG-QVFRHIFVLEEMVERLAGEQEL------VIVSPQVLKE 74 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + + +A P L+ D +VL+ V DP N+G I+R+A A DG+ Sbjct: 75 LTDSPSPQGIVAEVEIPKLAFPSDYKGKY---LVLEDVQDPGNLGTIIRTADAARFDGVF 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +++ + + +S G+ H+P R + S + Sbjct: 132 LSEKSADIYNQKTLRSMQGSHFHLPIWRTDVYQLCRELQEYETPILATTLSKKSVDYKSL 191 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++++AL+LG EG+G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242 >gi|332184962|ref|ZP_08386711.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Sphingomonas sp. S17] gi|332014686|gb|EGI56742.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Sphingomonas sp. S17] Length = 270 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 89/257 (34%), Gaps = 5/257 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K ++ K RH Q G+ ++ A A +A L Sbjct: 9 SNPLIKWVRDLRDK-RHRKQARQFLAEGLRILTEAKETGRLPTLLFFAKPSADHPLVRQL 67 Query: 86 NLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 P + K+ GK+ + + + + +S + +V + + Sbjct: 68 VRAVELAGGEAIETTPDILSKLSGKDNPQAVVGVFEELGTTLDMLDRSSSGIWLVAERLR 127 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ILR+ A G+I S +++ GAL +P ++ L + Sbjct: 128 DPGNLGTILRTGDAVGAGGLILVGECVDPFSVEAVRASMGALFTVPIVKTEWQ-PFLDWL 186 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 Q +GLS D++ L+ G E +G+ + + M G + Sbjct: 187 RQGPGQLVGLSLDTETDYRSADYTAPTFLLTGNEAQGMPADYAAACDVLVKIPMLGKADS 246 Query: 263 LNVSNAAAVALYITQNH 279 LN + A AV Y Sbjct: 247 LNAAVATAVMAYEVLAQ 263 >gi|148657561|ref|YP_001277766.1| RNA methyltransferase [Roseiflexus sp. RS-1] gi|148569671|gb|ABQ91816.1| RNA methyltransferase, TrmH family, group 3 [Roseiflexus sp. RS-1] Length = 252 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 103/241 (42%), Gaps = 13/241 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQTIDKIV 105 LYG + V AL R +LL + A PV+ + Sbjct: 4 LLYGRNAVREALRARRRTFQRLLVSAGAQETGTLGDIVRIAGEVGVPVERIDR-RELDRR 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 ++A HQG+ALE + L+ L++LDH+ DP N+G +LR+A Sbjct: 63 LRDANHQGVALECSDYPYVDLNDCLALAEERGEPAFLLLLDHIQDPQNVGTLLRTAEVVG 122 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSK 217 G++ R + + + ++SGA+EH+ ++N Q H+ + + Sbjct: 123 VHGVVIPGRRAAEVTPAVVNTSSGAVEHLRVAVVTNLAATIEQIQHAGVWVVGVEDDERA 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ + +AL+LGAEG GL T+E + L M G I +LNV+ A ++ LY Sbjct: 183 YEYDRVDLDLPLALVLGAEGPGLARLTRERCDFLVRLPMRGQIASLNVAVAGSIVLYHAW 242 Query: 278 N 278 Sbjct: 243 R 243 >gi|18310871|ref|NP_562805.1| RNA methyltransferase, TrmH family [Clostridium perfringens str. 13] gi|168211665|ref|ZP_02637290.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str. ATCC 3626] gi|168214920|ref|ZP_02640545.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE str. F4969] gi|18145553|dbj|BAB81595.1| probable rRNA methylase [Clostridium perfringens str. 13] gi|170710362|gb|EDT22544.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str. ATCC 3626] gi|170713658|gb|EDT25840.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE str. F4969] Length = 257 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 90/241 (37%), Gaps = 6/241 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 H + + G+ V A+ + + D + + + + Sbjct: 23 HRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTESFKEKNPDLFLKINENIKLIQMNEALL 82 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++ E + + ++ +L++++D V DP N+G I+R+A A G Sbjct: 83 KQLCSTENPQGIVGVINMQNKEL-----KSGELVVLVDKVQDPGNMGTIIRTAHAAGAAG 137 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 I+ TK + +S G++ +IP + +L + K Sbjct: 138 IVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSLDFVKSLKKEGYKLVVSS-LQGKNNFF 196 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +E K+ + +G EG G+ + + A + MPG ++LNV+ A ++ +Y Sbjct: 197 EENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQSF 256 Query: 282 K 282 K Sbjct: 257 K 257 >gi|328946840|gb|EGG40977.1| SpoU rRNA methylase [Streptococcus sanguinis SK1087] Length = 269 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 105/276 (38%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + K H+ K R++ + + G H A Sbjct: 24 MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 62 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +++ + I ++ A RL + V V P+ + + + +A Sbjct: 63 VSSGAELI-RIFALAEYAERLADFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 115 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + L+ V DP N+G I+R+A A DG+ + + + +S Sbjct: 116 REKIPAELSGHY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSM 172 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+ S S + + + L++G EG+G+ Sbjct: 173 QGSHFHLPVYRMDTADFIRLAQSSSLPILASTLSLTSIDYREVDSKESFVLVMGNEGQGI 232 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P+ A + H+ M G ++LNV+ AA + ++ Sbjct: 233 SPEMTAAADILVHISMKGQAESLNVAVAAGILIFHL 268 >gi|310827804|ref|YP_003960161.1| RNA methyltransferase [Eubacterium limosum KIST612] gi|308739538|gb|ADO37198.1| RNA methyltransferase [Eubacterium limosum KIST612] Length = 290 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 57/288 (19%), Positives = 104/288 (36%), Gaps = 15/288 (5%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 + S ++ + R + K + QK ++ + + L G A Sbjct: 1 MMSPGSIRLEIKIMAQELITSRQNAAVKNVIKLKQK-KNRDREKQFVLEGTKLFMEA-EA 58 Query: 64 PSRKIFQLLATKNALA------RLDWDANLPHPFPVKTVPPQTIDKIV------GKEAVH 111 + + T + + + PV TV + + G Sbjct: 59 WKVEFTAVFVTPQWIEGAEETVKSAFKRLKDTGIPVFTVDTSVFEAMSALKMPEGVLCTA 118 Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 + + ++LD V DP N+G I+R+A A DGII + + + Sbjct: 119 HKIDASEKFFEKKCKKNGKKCLSYVILDDVQDPGNVGTIIRTADAAGFDGIICSSKTADI 178 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA- 230 + + + A G++ H+P ++ L + + G + IG S K L + K Sbjct: 179 YNEKVLRGAMGSVFHLPVLQTGALEKTVLFLKEQGTRMIGTSLQGKTSLSASLAAQKAVG 238 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +ILG E KG+ + + L M G ++LNVS AA + +Y Sbjct: 239 IILGNESKGMSKSMADLCDDLYKLPMYGHAESLNVSVAAGILMYDIAR 286 >gi|291551180|emb|CBL27442.1| rRNA methylase, putative, group 3 [Ruminococcus torques L2-14] Length = 262 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 112/261 (42%), Gaps = 9/261 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K++ +KSR + + G P+ +I ++ A+++ + + Sbjct: 6 SNAQIKELAKLQKKSRLRDEKGIFLVEGPRMTEEI---PAERIEKVYASESFAKKNKEFS 62 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHV 141 PV+ + + QG+ L D ++ L+VLD++ Sbjct: 63 EKLQ-APVELLTDTVFAYVSD-TKTPQGILAIVKRLNYTMNDLMQVKNQKAPHLVVLDNL 120 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I R+A A GI+ +K + + +S GA+ +P++ + +L + +++ Sbjct: 121 QDPGNLGTIFRTAEAAGVTGILLSKDCVDVYNPKVIRSTMGAVFRMPFLYVEDLPEKIKE 180 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G +T + ++E A ++G EG GLR + + A + + M G + Sbjct: 181 LQKEGIKTYAAYLRGENAYDEEDYTTGCAFLIGNEGNGLRDEVADCADCLIRIPMEGEAE 240 Query: 262 ALNVSNAAAVALYITQNHFAK 282 +LN + AAAV ++ K Sbjct: 241 SLNAAVAAAVLMFEAGRQRRK 261 >gi|182626152|ref|ZP_02953912.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str. JGS1721] gi|177908589|gb|EDT71114.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str. JGS1721] Length = 257 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 90/241 (37%), Gaps = 6/241 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 H + + G+ V A+ + + + + + + + Sbjct: 23 HRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTESFKEKNPELFLKINENIKLIQMNEALL 82 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++ E + + ++ +L++++D V DP N+G I+R+A A G Sbjct: 83 KQLCSTENPQGIVGVINMQNKEL-----KSGELVVLVDKVQDPGNMGTIIRTAHAAGAAG 137 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 I+ TK + +S G++ +IP + +L + K Sbjct: 138 IVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSLDFVKSLKKEGYKLVVSS-LQGKNNFF 196 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +E K+ + +G EG G+ + + A + MPG ++LNV+ A ++ +Y Sbjct: 197 EENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQSF 256 Query: 282 K 282 K Sbjct: 257 K 257 >gi|31794756|ref|NP_857249.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis AF2122/97] gi|81421359|sp|Q7TW55|Y3610_MYCBO RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mb3610c gi|31620353|emb|CAD95796.1| PUTATIVE TRNA/RRNA METHYLTRANSFERASE [Mycobacterium bovis AF2122/97] Length = 402 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 69/262 (26%), Positives = 117/262 (44%), Gaps = 11/262 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79 A LR +H K+ ++ ++ + L G + V L + A Sbjct: 41 AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTEADE 99 Query: 80 RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131 RL + + +D++ +HQG+AL+ P D + Sbjct: 100 RLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQP 158 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP R Sbjct: 159 PALLVALDNLSDPRNLGAIMRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 218 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +NLT L+ G + IGL + L+ D + +++G+EGKGL ++ + Sbjct: 219 ATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEV 278 Query: 252 AHLHMPGIIKALNVSNAAAVAL 273 + M ++LN S AA V L Sbjct: 279 VSIPMAAQAESLNASVAAGVVL 300 >gi|257879970|ref|ZP_05659623.1| RNA methyltransferase [Enterococcus faecium 1,230,933] gi|257814198|gb|EEV42956.1| RNA methyltransferase [Enterococcus faecium 1,230,933] Length = 223 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 5/225 (2%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 G H + A + +I +L T+ + + V + + + Sbjct: 2 EGFHLIEEA-ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQ 60 Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 LA+ T + D S ++LD+V DP N+G ++R+A AF G++ K + Sbjct: 61 GILAVMTLT----SEDTPDFSGGWLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADI 116 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 S + +S G+ H+P ++ ++ L++ K + A+ Sbjct: 117 YSTKVLRSMQGSNYHLPVLQKDLADVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAI 176 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 I+G EG+G+ + ++ M G ++LNV AA + LY Sbjct: 177 IMGNEGQGVSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 221 >gi|325674243|ref|ZP_08153932.1| SpoU family rRNA methyltransferase [Rhodococcus equi ATCC 33707] gi|325554923|gb|EGD24596.1| SpoU family rRNA methyltransferase [Rhodococcus equi ATCC 33707] Length = 266 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 94/244 (38%), Gaps = 6/244 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFPVKTV 96 + + + G + V+ AL + +L T+ A R + + V Sbjct: 19 RGAERRKTGRFLVEGENAVAEALIAG--LVHELFFTEQAAERYPHLIERAVADGVRGSLV 76 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + I + +A+ + ++LL V + +P N G ++R A A Sbjct: 77 TDRAIRALSDTVTPPGVVAVCDLLDVPLATAVTSRTRLLAVPVAIGEPGNAGTVIRVADA 136 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D I + +S++G+L HIP +R N+ L + S G Q + ++D Sbjct: 137 VGADAAILAGDSVDPHNGKCVRSSAGSLFHIPIVRERNVDAVLDALTSAGIQILATAADG 196 Query: 217 KKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L++ A + G E GL A + + G ++LN++ AA++ LY Sbjct: 197 EVDLDEADDLLARPTAWLFGNEAHGLDAAVARRADHRVRIPIRGRAESLNLATAASICLY 256 Query: 275 ITQN 278 + Sbjct: 257 ASAR 260 >gi|294790246|ref|ZP_06755404.1| RNA methyltransferase, TrmH family, group 3 [Scardovia inopinata F0304] gi|294458143|gb|EFG26496.1| RNA methyltransferase, TrmH family, group 3 [Scardovia inopinata F0304] Length = 326 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 71/294 (24%), Positives = 128/294 (43%), Gaps = 26/294 (8%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN- 63 + K ++++ L R ++ + + ++ TS ++ + G + V AL Sbjct: 25 TPKAEDRVYHKAYRAKKALERRKAADPRLAARRRVAKFTSDSDDFVI-GRNAVLEALKAH 83 Query: 64 -PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 PS ++ L + R + +++I + HQG+ ++ AP Sbjct: 84 VPSSVLYILNRIEHDDRTREIIRLAGLEGLKILEADRLEMNRIA-RSVNHQGVIIKVAPY 142 Query: 122 LSPTLD--------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +L L + LD V DP N+GA++RSA AF G Sbjct: 143 HYKSLQELVDRAEAKAQALGSASAKAKALAQPLFIALDGVTDPQNLGAVIRSAAAFGASG 202 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +R S S +A K ++GA H+P R+ NLT A+ + GF +IGL + Sbjct: 203 VILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIDSLKERGFYSIGLDGGGTAQVG 262 Query: 222 QEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D + ++LG+EGKG+ +E ++ + M ++++LN S AA +AL+ Sbjct: 263 YSGFETDPLIVVLGSEGKGISRLVREQCDAIVSIPMTSLVESLNASVAAGIALF 316 >gi|154500974|ref|ZP_02039012.1| hypothetical protein BACCAP_04660 [Bacteroides capillosus ATCC 29799] gi|150269998|gb|EDM97517.1| hypothetical protein BACCAP_04660 [Bacteroides capillosus ATCC 29799] Length = 252 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 89/278 (32%), Gaps = 26/278 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ R + +++ Q + G + A Sbjct: 1 MEHITS------------------RQNPLMVRIKKLGQSRALRREEGVFVCEGPKLIEEA 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + L A L + L VP + + E LA+ P Sbjct: 43 LKWGACVETILAAEGKPLPQ-----GLTGESRQVEVPDSLLRAVSSVETPQGLLAVCRNP 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L+P L++ D V DP N+G I R+A AF DG++ + S ++ Sbjct: 98 GLTPPDKLTGGRYLVL--DGVQDPGNLGTIWRTADAFGADGLLLVNGCADPWSPKTIRAT 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GA +P T + + + + A+++G+EG+G+ Sbjct: 156 MGACFRLPAWETDLETVRALLDGADIPLYATALREDTVDVRDVDL-KRAAVVIGSEGRGI 214 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + M ++LN + AA V L+ Sbjct: 215 SDEALALCRRTIKIPMRARCESLNAAMAAGVVLWEMCR 252 >gi|222152461|ref|YP_002561636.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J] gi|222113272|emb|CAR40803.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J] Length = 251 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 119/242 (49%), Gaps = 9/242 (3%) Query: 45 QPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 Q +YGVH V+ +LN K++ + + P +T+ + Sbjct: 10 QETTDMVYGVHAVTESLNANTGNKLYIQEDLRGKNVDAIKALATEKKVSISWTPKKTLSE 69 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + + AVHQG L + L + + L+M+LD + DPHN G+ILR+A A Sbjct: 70 MT-EGAVHQGFVLRVSEYAYAELADILKKAESEENPLIMILDGITDPHNFGSILRTADAT 128 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GII K + + V++K+++GA+EH+P R++NL+ L K+ GF G D Sbjct: 129 KVCGIIIPKHRAVGVTPVVSKTSTGAVEHLPIARVTNLSQTLDKLKEAGFWIFGTDMDGT 188 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + K+ALI+G+EGKG+ ++ M + M G +++LN S AAAV +Y Sbjct: 189 PVQKWNT-SGKLALIIGSEGKGISHNIKKQVDEMITIPMDGHVQSLNASVAAAVLMYEVF 247 Query: 278 NH 279 + Sbjct: 248 RN 249 >gi|324991298|gb|EGC23231.1| SpoU rRNA methylase [Streptococcus sanguinis SK353] gi|325687125|gb|EGD29148.1| SpoU rRNA methylase [Streptococcus sanguinis SK72] Length = 246 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 107/276 (38%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + K H+ K R++ + + G H A Sbjct: 1 MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +++ + K+ ++ A RL + V V P+ + + + +A Sbjct: 40 VSSGA-KLIRIFALAEYAERLADFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 92 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L+ V DP N+G I+R+A A DG+ ++ + + +S Sbjct: 93 REEIPAELSGRY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISQLSADIYNLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+ S + S + + ALI+G EG+G+ Sbjct: 150 QGSHFHLPVYRMDTADFIRLARSSRLPILVSTLSSISIDYRKVDSKESFALIMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P+ A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPEMTAAADILVHISMKGQAESLNVAVAAGILIFHL 245 >gi|209964021|ref|YP_002296936.1| RNA methyltransferase, TrmH family, group 3 [Rhodospirillum centenum SW] gi|209957487|gb|ACI98123.1| RNA methyltransferase, TrmH family, group 3 [Rhodospirillum centenum SW] Length = 251 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 97/242 (40%), Positives = 140/242 (57%), Gaps = 11/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK-----TVPPQTIDKI 104 +YG+H V+AA NP R+ L T++ALA LD ++ + + +DK+ Sbjct: 10 LIYGLHPVAAAWINPERRCRGLYVTESALAALDGAVQRAAELGLERPDPTFLEKEELDKL 69 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + AVHQG+AL+TAPL ++ V L++VLD V DPHN+GAI+RSA AF Sbjct: 70 LPPGAVHQGVALDTAPLPEVAVEDVCIAAESEPQALVIVLDQVTDPHNVGAIMRSAAAFG 129 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I R++P + VLAK+ASGA++ +P +R++NL AL + GF T+GL + Sbjct: 130 ARAVIVQDRHAPPVTGVLAKTASGAVDAVPLVRVTNLARALDTLKQAGFWTVGLDESGAR 189 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 PL + + AL+LG+EG+GLR T E +A L G + +LNVSNAAAVALY Sbjct: 190 PLHEVDLTGRTALVLGSEGEGLRRLTGERCDEIARLPTGGPVGSLNVSNAAAVALYEVAR 249 Query: 279 HF 280 Sbjct: 250 RR 251 >gi|311031388|ref|ZP_07709478.1| RNA methyltransferase, TrmH family [Bacillus sp. m3-13] Length = 252 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 101/236 (42%), Gaps = 7/236 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 Q + G H V AL + + +++ +++ +WD N + P + Sbjct: 23 EREQSGTFIIEGFHLVEEALKVDN-LVEEIIISEDRSIPSEWDLN---HVELIYAVPNVL 78 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +I E QG+A + L N ++L+ LD+V DP N+G ++R+A A D Sbjct: 79 KEISETE-TPQGVAAICRIPVQHDLTLQPNQKILL-LDNVQDPGNVGTMIRTADAAGMDM 136 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + S+ + +S G++ H+P R T Q + E Sbjct: 137 VILGEGCADLYSSKVIRSTQGSIFHLPIARGDLKTYIKQCKELQTPVYGTSLQNGVPFQE 196 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + N ALILG EGKG+ + E ++ + G ++LNV AA + +Y + Sbjct: 197 VQSSNT-FALILGNEGKGMAQEHLEMTDQNLYIPIHGQSESLNVGVAAGILMYYLR 251 >gi|168206060|ref|ZP_02632065.1| RNA methyltransferase, TrmH family [Clostridium perfringens E str. JGS1987] gi|169343638|ref|ZP_02864637.1| RNA methyltransferase, TrmH family [Clostridium perfringens C str. JGS1495] gi|169298198|gb|EDS80288.1| RNA methyltransferase, TrmH family [Clostridium perfringens C str. JGS1495] gi|170662406|gb|EDT15089.1| RNA methyltransferase, TrmH family [Clostridium perfringens E str. JGS1987] Length = 257 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 90/241 (37%), Gaps = 6/241 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 H + + G+ V A+ + + D + + + + Sbjct: 23 HRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTESFKEKNPDLFLKINENIKLIQMNEALL 82 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++ E + + ++ +L++++D V DP N+G I+RSA A G Sbjct: 83 KQLCSTENPQGIVGVINMQNKEL-----KSGELVVLVDKVQDPGNMGTIIRSAHAAGAAG 137 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 I+ TK + +S G++ +IP + +L + K Sbjct: 138 IVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSLDFVKSLKKEGYKLVVSS-LQGKNNFF 196 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +E K+ + +G EG G+ + + A + MPG ++LNV+ A ++ +Y Sbjct: 197 EENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQSF 256 Query: 282 K 282 K Sbjct: 257 K 257 >gi|289759737|ref|ZP_06519115.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85] gi|289715301|gb|EFD79313.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85] Length = 280 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 67/264 (25%), Positives = 116/264 (43%), Gaps = 11/264 (4%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARL 81 +R +H K+ ++ ++ + L G + V L + A RL Sbjct: 1 MRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTEADERL 59 Query: 82 DWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQ 133 + + +D++ +HQG+AL+ P D + Sbjct: 60 TECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQPPA 118 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP R + Sbjct: 119 LLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARAT 178 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NLT L+ G + IGL + L+ D + +++G+EGKGL ++ + Sbjct: 179 NLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVS 238 Query: 254 LHMPGIIKALNVSNAAAVALYITQ 277 + M ++LN S AA V L Sbjct: 239 IPMAAQAESLNASVAAGVVLAEIA 262 >gi|110799854|ref|YP_696569.1| RNA methyltransferase [Clostridium perfringens ATCC 13124] gi|110674501|gb|ABG83488.1| RNA methyltransferase, TrmH family [Clostridium perfringens ATCC 13124] Length = 257 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 91/241 (37%), Gaps = 6/241 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 H + + G+ V A+ + + D + + + + Sbjct: 23 HRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTESFKEKNPDLFLKINENIKLIQMNETLL 82 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++ E + + ++ +L++++D V DP N+G I+R+A A G Sbjct: 83 KQLCSTENPQGIVGVINMQNKEL-----KSGELVVLVDKVQDPGNMGTIIRTAHAAGAAG 137 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 I+ TK + +S G++ +IP + ++L + K Sbjct: 138 IVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDNSLDFVKSLKKEGYKLVVSS-LQGKNNFF 196 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +E K+ + +G EG G+ + + A + MPG ++LNV+ A ++ +Y Sbjct: 197 EENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQSF 256 Query: 282 K 282 K Sbjct: 257 K 257 >gi|257064637|ref|YP_003144309.1| rRNA methylase, putative, group 3 [Slackia heliotrinireducens DSM 20476] gi|256792290|gb|ACV22960.1| rRNA methylase, putative, group 3 [Slackia heliotrinireducens DSM 20476] Length = 256 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 66/245 (26%), Positives = 110/245 (44%), Gaps = 17/245 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIV 105 ++ G H V AL + +L N + PVK V + +D Sbjct: 4 YIEGKHPVIEALRA-QMPLRCVLMADNLKRDGQVADILRKANKYNVPVKRVSRKELDAKS 62 Query: 106 GKEAVHQGLALETAPLLSPTL-----------DAVRNSQLLMVLDHVNDPHNIGAILRSA 154 + HQG+ E P ++ N+ L++VLDH+ D N+GAI RSA Sbjct: 63 -ERGSHQGVMAEALPFKYASMTDIVKASADHAKENNNAALVIVLDHITDAGNLGAIARSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 G+I + S +A KS++GA+ H+P +++NLT AL ++ GF G S Sbjct: 122 EVVGASGLIIPNKRSAQVTAATYKSSAGAINHLPVAQVANLTGALDRLKKAGFWVAGASE 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ + + KIAL++G E +G+ T E+ + L G++ +LNV+ A+ +Y Sbjct: 182 HAQHTVWEAPLYGKIALVMGNEQEGISRLTLESCDFLVKLPQAGMVGSLNVAQASTAVMY 241 Query: 275 ITQNH 279 Sbjct: 242 EWLRQ 246 >gi|303258070|ref|ZP_07344078.1| RNA methyltransferase, TrmH family [Burkholderiales bacterium 1_1_47] gi|330998717|ref|ZP_08322446.1| RNA methyltransferase, TrmH family [Parasutterella excrementihominis YIT 11859] gi|302859089|gb|EFL82172.1| RNA methyltransferase, TrmH family [Burkholderiales bacterium 1_1_47] gi|329576456|gb|EGG57968.1| RNA methyltransferase, TrmH family [Parasutterella excrementihominis YIT 11859] Length = 268 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 95/254 (37%), Gaps = 3/254 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K ++ Q SR + G+H L++P + ++ + A + Sbjct: 11 NPSIKLAKNLAQHSRAARKEGLSLAEGIHLARELLSHP-ELVRKVFLREGAEKNFEISEI 69 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 L +K Q +I + A + P ++ + + LD V DP N Sbjct: 70 LQKYLSLKISVVQLPSQIYASISPVDTSAGIVCEIRIPEEGKIKKDEDWIYLDGVQDPGN 129 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G ILRSA+A I + + + S + ++A GA I L + +K + Sbjct: 130 VGTILRSALASGVTNIALSPQCAYVWSPKVLRAAMGAHFFCNIISSVELAEIKEKTGAVC 189 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + + G+EG G+ K E + + + +++LNV+ Sbjct: 190 LVADARGGKDLYEEKWG--KGQTLWVFGSEGLGVSEKALELSDLTLLIPLDSRVESLNVA 247 Query: 267 NAAAVALYITQNHF 280 AA+V L+ + Sbjct: 248 TAASVCLFEQRRRR 261 >gi|198283233|ref|YP_002219554.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667862|ref|YP_002425465.1| tRNA (guanosine-2'-O-)-methyltransferase, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247754|gb|ACH83347.1| RNA methyltransferase, TrmH family, group 3 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218520075|gb|ACK80661.1| tRNA (guanosine-2'-O-)-methyltransferase, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 255 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 106/235 (45%), Gaps = 5/235 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPFPVKT---VPPQTIDKIV 105 LYG+H VSAAL+ + + A R+ PV+ V Sbjct: 6 LYGIHAVSAALDAEELLELWVAVERRADERIAPLVQKAAEQRLPVQEWRSVALGRKLNTD 65 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 + V L L + L+VLD V DPHN+GA LRSA A D +I Sbjct: 66 RHQGVGGLLRAFPGQDFEAILAQLNGCGFLLVLDGVLDPHNLGACLRSAEAAGVDAVILP 125 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + +A + K+++G+ +P ++NL+ L + GF +G++ + + L Sbjct: 126 RDNACPVNATVRKASAGSASRVPVCTVTNLSRTLSSLQEAGFWLVGMAGEGSRSLYALDL 185 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +++G E KGLR T+E +AH+ M G I++LNVS A + L+ Sbjct: 186 DMPLVMVMGGEEKGLRRLTREHCDYLAHIPMMGAIESLNVSVATGICLFEAARQR 240 >gi|327490084|gb|EGF21872.1| SpoU rRNA methylase [Streptococcus sanguinis SK1058] Length = 246 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 106/276 (38%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + K H+ K R++ + + G H A Sbjct: 1 MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +++ I ++ A RL + V V P+ + + + +A Sbjct: 40 VSSGEELI-RIFALAEYAERLADFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 92 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L++V DP N+G I+R+A A DG+ + + + +S Sbjct: 93 RKEIPSELSGRY---LFLENVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+ S S + + + + L++G EG+G+ Sbjct: 150 QGSHFHLPVYRMDTADFIRLARSSSLPILASTLSSTSIDYREVVNKESFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P+ E A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPEMTEAADLLVHISMKGQAESLNVAVAAGILIFHL 245 >gi|309379967|emb|CBX21378.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 261 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 89/282 (31%), Gaps = 24/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E + + + + Q L GVH + Sbjct: 1 MKHISSANNE------------------HVRHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L + + + + + + +V + KI + Sbjct: 43 LQSGGKPLGVYIPEAKMPSEEVRKLMAVLPEDGFFSVSDGILKKISS-LTCADDVLALID 101 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + L A + +VLD V DP N+G +LRSA A ++ K + + S + ++ Sbjct: 102 IPDAGVLPAGGDC---VVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRA 158 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 GA ++L L F T E + + G EG G Sbjct: 159 GMGAHFLSEIYPQADLEIWLAHYKGRVFATALREEKQAVLY-NEDLREPTTWVFGNEGAG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + A + M ++LNV+ AA + L+ A Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRA 259 >gi|289445173|ref|ZP_06434917.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A] gi|289418131|gb|EFD15332.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A] Length = 380 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 69/262 (26%), Positives = 117/262 (44%), Gaps = 11/262 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79 A LR +H K+ ++ ++ + L G + V L + A Sbjct: 41 AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTEADE 99 Query: 80 RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131 RL + + +D++ +HQG+AL+ P D + Sbjct: 100 RLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQP 158 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP R Sbjct: 159 PALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 218 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +NLT L+ G + IGL + L+ D + +++G+EGKGL ++ + Sbjct: 219 ATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEV 278 Query: 252 AHLHMPGIIKALNVSNAAAVAL 273 + M ++LN S AA V L Sbjct: 279 VSIPMAAQAESLNASVAAGVVL 300 >gi|257068791|ref|YP_003155046.1| rRNA methylase [Brachybacterium faecium DSM 4810] gi|256559609|gb|ACU85456.1| rRNA methylase [Brachybacterium faecium DSM 4810] Length = 289 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 53/281 (18%), Positives = 112/281 (39%), Gaps = 8/281 (2%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M+ + + + A++ R + +++ Q+ ++ + + GV ++ A Sbjct: 1 MSARQSPRRGRPGTASPP--ARIERRNALFQQWQALLTNRTKRTRSGEMLIQGVRPITQA 58 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI-VGKEAVHQGLALETA 119 +++ L + +R D P PV + P+ + ++ ++ + LAL Sbjct: 59 ISHGVEIRALLSDGREQPSRWAQDLLANAPAPVVVLAPELMAELGEREDGAPELLALAAV 118 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 P S + L++V D + P NIG++ RS A D ++ T + + ++ Sbjct: 119 PSDSLDRLEPTGASLVVVFDRPSGPGNIGSLARSVDALGADALLLTGHSADAWDPAAIRA 178 Query: 180 ASGA-----LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 ++G+ + +P R ++ + +GL L L++G Sbjct: 179 STGSLFAVPVMRLPSHREVLDWLTRRRALGEPWTVLGLDEAGGHDLAAADLTGPTLLVVG 238 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 E G+ +E +A + M G +LN S A +VALY Sbjct: 239 NETVGMSSGWREACDVIAEIPMTGAASSLNASVAGSVALYE 279 >gi|121639499|ref|YP_979723.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991996|ref|YP_002646685.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|260202767|ref|ZP_05770258.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85] gi|289572232|ref|ZP_06452459.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85] gi|254765090|sp|A1KPR5|Y3644_MYCBP RecName: Full=Uncharacterized tRNA/rRNA methyltransferase BCG_3644c gi|121495147|emb|CAL73633.1| Putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224775111|dbj|BAH27917.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|289536663|gb|EFD41241.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85] Length = 322 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 69/262 (26%), Positives = 117/262 (44%), Gaps = 11/262 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79 A LR +H K+ ++ ++ + L G + V L + A Sbjct: 41 AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTEADE 99 Query: 80 RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131 RL + + +D++ +HQG+AL+ P D + Sbjct: 100 RLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQP 158 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP R Sbjct: 159 PALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 218 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +NLT L+ G + IGL + L+ D + +++G+EGKGL ++ + Sbjct: 219 ATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEV 278 Query: 252 AHLHMPGIIKALNVSNAAAVAL 273 + M ++LN S AA V L Sbjct: 279 VSIPMAAQAESLNASVAAGVVL 300 >gi|313806516|gb|EFS45023.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL087PA2] gi|313817383|gb|EFS55097.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL046PA2] gi|313821873|gb|EFS59587.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL036PA1] gi|313824231|gb|EFS61945.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL036PA2] gi|313826598|gb|EFS64312.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL063PA1] gi|314926687|gb|EFS90518.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL036PA3] gi|314961108|gb|EFT05209.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL002PA2] gi|314980411|gb|EFT24505.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL072PA2] gi|314987252|gb|EFT31343.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL005PA2] gi|314988859|gb|EFT32950.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL005PA3] gi|315082487|gb|EFT54463.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL027PA2] gi|315086198|gb|EFT58174.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL002PA3] gi|315087783|gb|EFT59759.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL072PA1] gi|327333437|gb|EGE75157.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL096PA3] gi|327445543|gb|EGE92197.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL013PA2] gi|328758785|gb|EGF72401.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL020PA1] gi|332674780|gb|AEE71596.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes 266] Length = 318 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 69/290 (23%), Positives = 127/290 (43%), Gaps = 24/290 (8%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN--LFLYGVHTVSAALN 62 + K ++++ ++ AK K ++ +K + ++ G + V AL+ Sbjct: 35 TPKAEDRVYH--KAYKAKQE------KLARAAARKPANRQSTGAGPEWVIGRNPVLEALH 86 Query: 63 NPSRKIFQLLATKNALARLDWDANL----PHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 + + A A L H + +D++ G + HQG+AL Sbjct: 87 AG-LPVRTAYVAEGAEHDSRLRAILTFCADHGIALMQATRGELDRMTG-GSNHQGVALRL 144 Query: 119 APLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 T+ L++ LD V DP N+GAI+RSA AF G++ R S S Sbjct: 145 PEYEYATVGDLIAAGTQTYRGGLVVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSAS 204 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIA 230 +A K+++GA IP +NL AL K + G+ +GL+ ++ + + Sbjct: 205 MTAAAWKTSAGAAARIPVAMATNLNQALGKFAAAGWMIVGLAGEADSDFASAPGFDGPLV 264 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +++G+EG GL T+++ +A + + +++LN S AA++ALY Sbjct: 265 IVVGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASIALYEAARMR 314 >gi|289424339|ref|ZP_06426122.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes SK187] gi|295129939|ref|YP_003580602.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes SK137] gi|289155036|gb|EFD03718.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes SK187] gi|291376216|gb|ADE00071.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes SK137] gi|313765526|gb|EFS36890.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL013PA1] gi|313772926|gb|EFS38892.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL074PA1] gi|313793051|gb|EFS41118.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL110PA1] gi|313802499|gb|EFS43721.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL110PA2] gi|313811064|gb|EFS48778.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL083PA1] gi|313814434|gb|EFS52148.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL025PA1] gi|313815073|gb|EFS52787.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL059PA1] gi|313828595|gb|EFS66309.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL063PA2] gi|313831828|gb|EFS69542.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL007PA1] gi|313834629|gb|EFS72343.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL056PA1] gi|313840140|gb|EFS77854.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL086PA1] gi|314915834|gb|EFS79665.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL005PA4] gi|314917109|gb|EFS80940.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL050PA1] gi|314921384|gb|EFS85215.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL050PA3] gi|314931296|gb|EFS95127.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL067PA1] gi|314954882|gb|EFS99288.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL027PA1] gi|314958816|gb|EFT02918.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL002PA1] gi|314964466|gb|EFT08566.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL082PA1] gi|314969565|gb|EFT13663.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL037PA1] gi|314974630|gb|EFT18725.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL053PA1] gi|314977176|gb|EFT21271.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL045PA1] gi|314985727|gb|EFT29819.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL005PA1] gi|315078519|gb|EFT50550.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL053PA2] gi|315082017|gb|EFT53993.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL078PA1] gi|315097464|gb|EFT69440.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL038PA1] gi|315099914|gb|EFT71890.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL059PA2] gi|315101773|gb|EFT73749.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL046PA1] gi|315110269|gb|EFT82245.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL030PA2] gi|327331450|gb|EGE73189.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL096PA2] gi|327334963|gb|EGE76674.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL097PA1] gi|327447162|gb|EGE93816.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL043PA1] gi|327449803|gb|EGE96457.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL043PA2] gi|327454652|gb|EGF01307.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL087PA3] gi|327456726|gb|EGF03381.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL083PA2] gi|327457002|gb|EGF03657.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL092PA1] gi|328755707|gb|EGF69323.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL087PA1] gi|328756486|gb|EGF70102.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL025PA2] gi|328761793|gb|EGF75306.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL099PA1] Length = 318 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 69/290 (23%), Positives = 127/290 (43%), Gaps = 24/290 (8%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN--LFLYGVHTVSAALN 62 + K ++++ ++ AK K ++ +K + ++ G + V AL+ Sbjct: 35 TPKAEDRVYH--KAYKAKQE------KLARAAARKPANRQSTGAGPEWVIGRNPVLEALH 86 Query: 63 NPSRKIFQLLATKNALARLDWDANL----PHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 + + A A L H + +D++ G + HQG+AL Sbjct: 87 AG-LPVRTAYVAEGAEHDSRLRAILTFCADHGIALMQATRGELDRMTG-GSNHQGVALRL 144 Query: 119 APLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 T+ L++ LD V DP N+GAI+RSA AF G++ R S S Sbjct: 145 PEYEYATVGDLIAAGTQTYRGGLVVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSAS 204 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIA 230 +A K+++GA IP +NL AL K + G+ +GL+ ++ + + Sbjct: 205 MTAAAWKTSAGAAARIPVAMATNLNQALGKFAAAGWMIVGLAGEADSDFASAPGFDGPLV 264 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +++G+EG GL T+++ +A + + +++LN S AA++ALY Sbjct: 265 IVVGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASIALYEAARMR 314 >gi|89069652|ref|ZP_01156989.1| tRNA/rRNA metyltransferase [Oceanicola granulosus HTCC2516] gi|89044732|gb|EAR50838.1| tRNA/rRNA metyltransferase [Oceanicola granulosus HTCC2516] Length = 259 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 93/236 (39%), Positives = 136/236 (57%), Gaps = 9/236 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +L+G+H V AL NP R +L+ TKNAL RL + P+ + + Sbjct: 23 WLFGLHAVRDALENPRRDKRRLVVTKNALDRLGDAVGQA-GLEPEISDPRKFAAPLDPGS 81 Query: 110 VHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 VHQG ALE PL +L V +++LD V+DPHN+GAILRSA F +I Sbjct: 82 VHQGAALEVRPLDWGSLADVCTAGSDLPPRVVLLDRVSDPHNVGAILRSAEVFGARAVIG 141 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE- 223 +R+S E+ LAK+ASGALE PY+R++NL A++++ G+ GL+ +++ + Sbjct: 142 VQRHSAPETGALAKAASGALERQPYLRVTNLARAMEELKDMGYLVAGLAGEAETDIRPAL 201 Query: 224 --IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ +AL+LGAEG GLR KT+ET + + G +LNVSNAAAVALY ++ Sbjct: 202 DGHRDRPVALVLGAEGPGLRDKTRETCDVLVRIDAAGGFGSLNVSNAAAVALYASR 257 >gi|329961963|ref|ZP_08299974.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057] gi|328530611|gb|EGF57469.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057] Length = 282 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 89/250 (35%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + + ++R + ALN + L + Sbjct: 17 FSTLTEAQLRNRLEPSRGIFIAESPKVIKVALNAGYEPLALLCEHNHITGDAADIIKSCG 76 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + + G L +L + R ++ ++V+D V D NIGA Sbjct: 77 DIPVYTGSRKLLATLTGYVLTRGVLCAMRRRMLPSVEEVCREARRIVVIDGVVDTTNIGA 136 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T+ + + + G++ +P+ + L K Sbjct: 137 IFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLLPWTWLDGSLSGLNKYGFRTAAM 196 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 K+A+++G EG GL +T A + + M + +LNV+ A+ Sbjct: 197 ALSDHSISIDDPVLTAEPKLAIVMGTEGDGLPHETITEADYVVRIPMSHGVDSLNVAAAS 256 Query: 270 AVALYITQNH 279 AVA + + Sbjct: 257 AVAFWQLRAQ 266 >gi|146298170|ref|YP_001192761.1| RNA methyltransferase [Flavobacterium johnsoniae UW101] gi|146152588|gb|ABQ03442.1| RNA methyltransferase, TrmH family, group 3 [Flavobacterium johnsoniae UW101] Length = 244 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 106/240 (44%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++G+ + A+ K+F L + VP + ++++ Sbjct: 7 IFGIRAIIEAIQAGQEVDKVFIQKEISGELMKDLMKVMKRANINFSYVPVEKLNRLT--P 64 Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG +P+ ++ + L ++LD ++D N GAI+R+A +G Sbjct: 65 NNHQGAVATISPIGFIDIEHLVESTIASGSKPLFLILDQISDARNFGAIIRTAECTGVNG 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II K S + K+++GA+ ++P ++ ++ DA+ + G +T+ + + + + Sbjct: 125 IIVQKAGSAPVNGDTVKTSAGAVFNVPICKVEHIKDAIFYLQGSGIKTVAATEKTDQNIY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 N+ +A+I+G+E +G+ P + A L M G I +LNVS A LY + Sbjct: 185 DLSLNEPLAIIMGSEDRGINPSVLKIVDEKAKLPMFGSIGSLNVSVACGAFLYEAVRQRS 244 >gi|257439912|ref|ZP_05615667.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii A2-165] gi|257197640|gb|EEU95924.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii A2-165] Length = 275 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 52/278 (18%), Positives = 95/278 (34%), Gaps = 12/278 (4%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 I + D H +L Y ++ +SR + +S AL+ + Sbjct: 2 PNIIEITDFHAPELDP----YARLTQNQLRSRLEPEKGIFIAESPKVISRALDAGFVPVS 57 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 L+ + P+ T + + + G E L P + Sbjct: 58 LLMERRQITGPAAEILTRCGDAPIYTADRELLAALTGYELTRGVLCAFQRPKPRTVEELC 117 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 RN++ + VL+ + D N+GAI RSA A + D ++ + + G + +P+ Sbjct: 118 RNARRVAVLEGIVDSTNVGAIFRSAAALNMDAVLVNPSCCDPLCRRAVRVSMGTVFQVPW 177 Query: 190 IRISNLTDALQKMH--------SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 +I + E + K+A++LG EG GL Sbjct: 178 AQIGETPADWPEKGLAQLNALGFKTAAMALSDRSVSIDDEALAREPKLAIVLGTEGDGLS 237 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 T + + M + +LNV+ A+AVA + Sbjct: 238 HTTIASCDYTVKIPMSHGVDSLNVAAASAVAFWQLGKQ 275 >gi|239627006|ref|ZP_04670037.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517152|gb|EEQ57018.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 287 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 95/258 (36%), Gaps = 7/258 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ +RH + + AL+ I L+ T++ + Sbjct: 18 YARLTEGQLLNRHEPEKGIFIAESPKVIERALDAGCVPISLLMETRHVGTQARDIIQRCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + ++ G L P L D ++ + VL++V +P NIGA Sbjct: 78 EIPVYTAEFHVLTQLTGFHLTRGMLCAMYRPPLPGLEDVCGGARRIAVLENVMNPTNIGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 + RSA A D ++ T S + + G + IP+ + + Q S Sbjct: 138 VFRSAAALGMDAVLLTAACSNPLYRRAIRVSMGTVFQIPWTILDSRCSWPQPGISRLRGM 197 Query: 210 IGLSSDS-------KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 ++ + DK+A+ILG EG GL +T + M + + Sbjct: 198 GFKTAAMALGDDSICIDDAGLMAEDKLAVILGTEGDGLSKETIADCDYTVRIPMSHGVDS 257 Query: 263 LNVSNAAAVALYITQNHF 280 LNV+ A+AV + F Sbjct: 258 LNVAAASAVMFWQIGRAF 275 >gi|332522981|ref|ZP_08399233.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus porcinus str. Jelinkova 176] gi|332314245|gb|EGJ27230.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus porcinus str. Jelinkova 176] Length = 248 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 9/236 (3%) Query: 51 LYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V+ +LN K++ + + + P +T+ + + A Sbjct: 13 VYGVHAVTESLNANTGNKLYIQEDLRGKNVDTIKNLARDKKVSISWAPKKTLSDMT-EGA 71 Query: 110 VHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 VHQG L + L+ + L++VLD + DPHN G+ILR+A A G++ Sbjct: 72 VHQGFVLRVSAFAYSELETLIAKAEKEENPLILVLDGLTDPHNFGSILRTADATKVCGVV 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + + V+AK+++GA+EH+P R++NL+ L K+ GF G D + Sbjct: 132 IPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEAGFWIFGTDMDGTPVQKWN 191 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + K+ LI+G+EGKG+ ++ M + M G +++LN AAAV +Y H Sbjct: 192 T-SGKLVLIIGSEGKGISTNIKKQVDEMITIPMDGHVQSLNAGVAAAVLMYEVFRH 246 >gi|154253162|ref|YP_001413986.1| RNA methyltransferase [Parvibaculum lavamentivorans DS-1] gi|154157112|gb|ABS64329.1| RNA methyltransferase, TrmH family, group 3 [Parvibaculum lavamentivorans DS-1] Length = 288 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 107/276 (38%), Positives = 149/276 (53%), Gaps = 17/276 (6%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPEN-------------LFLYGVHTVSAALNNPSRK 67 A++ R + K S + +LYG H V AAL NP+R Sbjct: 11 ARMSRRKQQGKFSNSSATSGSPRGRNGRSPAGGKGGGGANDAYLYGFHAVLAALANPARL 70 Query: 68 IFQLLATKNALARLDWD-ANLPHPFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 +L+ T+NA L A LP PV + + + I ++ AVHQG+AL +PL Sbjct: 71 AERLVLTRNAETELARQGARLPADLPVRLEIMENEDIAALLPAGAVHQGIALRASPLPDL 130 Query: 125 TL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + +A + ++VLD V DPHN GAILRSA F +ITT+R SPS VLAK+ASGA Sbjct: 131 DVVEACEGTNRVVVLDQVTDPHNFGAILRSAAVFGAGALITTERNSPSLGGVLAKAASGA 190 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 LE + RI+NL A++++ GF+ +GL + + L + ++AL+LGAEG GLR Sbjct: 191 LELVRVARITNLVRAIEELKELGFEVVGLDGEGEASLPDLKLSPRVALVLGAEGAGLRRL 250 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 T+E +A L G +K+LNVSNAAAVALY Sbjct: 251 TREHCDLLARLPAAGGMKSLNVSNAAAVALYELFRR 286 >gi|325696356|gb|EGD38247.1| SpoU rRNA methylase [Streptococcus sanguinis SK160] Length = 246 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + K H+ K R++ + + G H A Sbjct: 1 MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +++ I ++ A RL + V V P+ + + + +A Sbjct: 40 VSSGEELI-RIFALAEYAERLADFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 92 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L+ V DP N+G I+R+A A DG+ + + + +S Sbjct: 93 REEIPAELSGRY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P RI S S + + + AL++G EG+G+ Sbjct: 150 QGSHFHLPVYRIDTADFIRLAQSSRLPILASTLSSTSIDYREVDSKESFALVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P+ A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPEMTAAADILVHISMKGQAESLNVAVAAGILIFHL 245 >gi|253996869|ref|YP_003048933.1| tRNA/rRNA methyltransferase SpoU [Methylotenera mobilis JLW8] gi|253983548|gb|ACT48406.1| tRNA/rRNA methyltransferase (SpoU) [Methylotenera mobilis JLW8] Length = 263 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 100/261 (38%), Gaps = 12/261 (4%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 + R++ +K+++ F +R L GVH + + ++ ++ + Sbjct: 7 ISRDNPVFKQLKKFADNARERRAEGKTLLDGVHLIESYMDTFGEPDLIIIPEGKSSVEAT 66 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 +P ++ A G+ L + +++L+ + Sbjct: 67 GLIQNLADISTIMLPTLMFAELT-PVANATGILALVKIPQ---LPVPEQPEFVLMLEDIQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP NIG++LR+A A D + + + S + GA +P + +L +ALQ+ Sbjct: 123 DPGNIGSMLRTAAASGVDVVYLSTSCTDVWSPKALRGGQGAQFVLPIVERVDLINALQEF 182 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----G 258 ++ + L + + A ++G EG GLR +T + + M G Sbjct: 183 DG----NSYATAMQGESLYAQDLSAPTAFVIGNEGAGLRKQTMAATSKRITIPMANTALG 238 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LN AAAV L+ Sbjct: 239 SVESLNAGAAAAVCLFERMRQ 259 >gi|315150158|gb|EFT94174.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0012] Length = 258 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 95/238 (39%), Gaps = 3/238 (1%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + + G H V A+ + + L + W A + V + + Sbjct: 23 YREELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWRTWLAEQETE-KLIFVSDEVL 81 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + LA+ T + + LL+ D++ DP N+G ++R+A A G Sbjct: 82 NSLSELPTSQGILAIVTLETQQEKSLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAG 139 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + + + +S G+ H+P ++ +++ Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYY 199 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ + ALILG EG G+ P+ T ++ M G ++LNV+ AA V ++ +N+ Sbjct: 200 EQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|315146678|gb|EFT90694.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX4244] Length = 258 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 96/238 (40%), Gaps = 3/238 (1%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + + G H + A+ + + L + W A + V + + Sbjct: 23 YREELNQYIIEGFHLIEEAVKANADVQWILFNQRGQQEWGTWLAEQETE-KLIFVSDEVL 81 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + LA+ T L + + LL+ D++ DP N+G ++R+A A G Sbjct: 82 NSLSELPTSQGILAIVTLETQQEQLLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAG 139 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + + + +S G+ H+P ++ +++ Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYY 199 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ + ALILG EG G+ P+ T ++ M G ++LNV+ AA V ++ +N+ Sbjct: 200 EQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|224542074|ref|ZP_03682613.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM 15897] gi|224525007|gb|EEF94112.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM 15897] Length = 242 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 92/249 (36%), Gaps = 19/249 (7%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N++ K + K + + + G H V A + D Sbjct: 6 NNKTIKDLVKLKNK-KTRDEKGLFLVDGFHMVEEAKKAGLCDLVI-----------STDE 53 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 +L V V ++K+ + + L +++LD V DP Sbjct: 54 SLEGQDKVLVVSDSVMEKLSYTKTPQ--PIMAVCHKKDNILKHYDR---VLILDGVQDPG 108 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ILRSA+AF I+ + + +S GA+ H+ +R + Sbjct: 109 NLGTILRSALAFGFKQIVMSPDCVDLYNDKALRSTQGAVFHLDIVRDDLHHVIPELQKLG 168 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + ++ DK+A ++G EG G+R +T + + ++ + +++LNV Sbjct: 169 VRVIATS-LHNASSIDDIKSTDKMAFVMGNEGNGVRDETIAMSDASLYIPI-DTMESLNV 226 Query: 266 SNAAAVALY 274 AA + +Y Sbjct: 227 GVAAGIVMY 235 >gi|295103429|emb|CBL00973.1| rRNA methylase, putative, group 3 [Faecalibacterium prausnitzii SL3/3] Length = 297 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 70/278 (25%), Positives = 120/278 (43%), Gaps = 19/278 (6%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 + H RN + + + Q +YG + V+ L + S L+A Sbjct: 24 RKEHKKMEERNQP-----RRPRRDAEQPQQKSESLIYGKNPVTELLKSGSGVDTVLIAEG 78 Query: 76 NALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----- 128 A A + L VK V P + + G E+ HQG+A + + T++ Sbjct: 79 MAPAVAAYYTALAKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYATVEDLLAAA 137 Query: 129 --VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 L++ D + DPHN+GA++RSA+ GI+ KR S + + KS++GA E Sbjct: 138 KAKGEPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAER 197 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +P R++N+ + ++++ G L + IAL+LG+EG G+ ++ Sbjct: 198 LPVARVANIGETIRRLKEQGVFVYCA-DMDGVSLRKNNLTGPIALVLGSEGSGVSQLVKK 256 Query: 247 TATSMAHLHMPG---IIKALNVSNAAAVALYITQNHFA 281 + L M + + NVS AA + LY Q+ A Sbjct: 257 LCDGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQRA 294 >gi|288574821|ref|ZP_06393178.1| RNA methyltransferase, TrmH family, group 3 [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570562|gb|EFC92119.1| RNA methyltransferase, TrmH family, group 3 [Dethiosulfovibrio peptidovorans DSM 11002] Length = 269 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 60/260 (23%), Positives = 115/260 (44%), Gaps = 7/260 (2%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN---NPSRKIFQLLATKNALARL 81 ++ R + +S + + + +G + V + L + +KI+ + Sbjct: 5 KDKRKVRSDRSKGRTTSSRRSEDKDLCWGRNAVISMLETVPSACKKIYLATGIQTTFRDD 64 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVL 138 + V +D+I G E HQG+ L + LL+ + Sbjct: 65 LLSLAGKNAVEVTEANGSYLDEITGGEK-HQGIVANIDLPKPRDLSQFSPKKGPSLLLAM 123 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 DHV DPHN GA++R+A A G+I R S + + K+++GA +P ++NL + Sbjct: 124 DHVKDPHNFGAMIRTAEAVGALGVIYPSRRSVGVTGTVIKTSAGAAFRVPLYEVTNLVRS 183 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ + G+ +GL + + + DK+ L++G+EG+GL + E + + M G Sbjct: 184 MEILKKEGYWVVGLDHEEPRDIWSSPLPDKLVLMVGSEGEGLSRLSSERCDDLRRIPMVG 243 Query: 259 IIKALNVSNAAAVALYITQN 278 +LN S AAA+ ++ + Sbjct: 244 KTGSLNASVAAALGMFEWRR 263 >gi|160943055|ref|ZP_02090293.1| hypothetical protein FAEPRAM212_00532 [Faecalibacterium prausnitzii M21/2] gi|158445749|gb|EDP22752.1| hypothetical protein FAEPRAM212_00532 [Faecalibacterium prausnitzii M21/2] Length = 297 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 70/278 (25%), Positives = 120/278 (43%), Gaps = 19/278 (6%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 + H RN + + + Q +YG + V+ L + S L+A Sbjct: 24 RKEHKKMEERNQP-----RRPRRDAEQPQQKSESLIYGKNPVTELLKSGSGVDTVLIAEG 78 Query: 76 NALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----- 128 A A + L VK V P + + G E+ HQG+A + + T++ Sbjct: 79 MAPAVAAYYTALAKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYATVEDLLAAA 137 Query: 129 --VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 L++ D + DPHN+GA++RSA+ GI+ KR S + + KS++GA E Sbjct: 138 KAKGEPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAER 197 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +P R++N+ + ++++ G L + IAL+LG+EG G+ ++ Sbjct: 198 LPVARVANIGETIRRLKEQGVFVYCA-DMDGVSLRKNNLTGPIALVLGSEGSGVSQLVKK 256 Query: 247 TATSMAHLHMPG---IIKALNVSNAAAVALYITQNHFA 281 + L M + + NVS AA + LY Q+ A Sbjct: 257 LCDGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQRA 294 >gi|320333743|ref|YP_004170454.1| TrmH family RNA methyltransferase [Deinococcus maricopensis DSM 21211] gi|319755032|gb|ADV66789.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus maricopensis DSM 21211] Length = 242 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 115/235 (48%), Gaps = 13/235 (5%) Query: 50 FLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 LYG + V AL + ++ ++A R V+ P +D++ G Sbjct: 2 LLYGRNPVLEALRDGRVTEVLVARGVEDAFVREL----KATDVRVRFAPRIELDQLAGTT 57 Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ E L T+D L+++LD + DP N GAI+RSA G Sbjct: 58 A-HQGVIAEVEDLEWATVDDILDRAESRGEDLLVVLLDGITDPRNFGAIIRSAEVLGAHG 116 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +R S S V+AK+A+GA ++P + NL + ++ + G G + ++ + L Sbjct: 117 VIVEERRSAPLSPVVAKTAAGATSYLPVAQTKNLPRLIDQLKTDGVWVYGAAGEAARDLR 176 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + K+AL++GAEG+GLR +E + + + G +++LN S AA++ LY Sbjct: 177 ELDYRGKLALVIGAEGEGLRRLVREKCDELVSIPVRGRVQSLNASVAASILLYQA 231 >gi|304321685|ref|YP_003855328.1| rRNA methylase [Parvularcula bermudensis HTCC2503] gi|303300587|gb|ADM10186.1| rRNA methylase [Parvularcula bermudensis HTCC2503] Length = 243 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 91/232 (39%), Positives = 127/232 (54%), Gaps = 6/232 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +LYG HTV AAL NP R +LLAT+NA L W + V P+ IDK + A Sbjct: 13 WLYGRHTVEAALGNPQRHQVKLLATRNA---LGWLKERGRTITIDPVTPKDIDKALPPGA 69 Query: 110 VHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 VHQGLA+ PL SP+L + L+VLD + DP NIGA+ R A AFS +I Sbjct: 70 VHQGLAMLANPLPSPSLAEILENGETGPLLVLDQITDPQNIGALFRLAAAFSAKAVIAQD 129 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R +P LAK+A+GA+E +P+I + N++ AL+ + GL+ + L Sbjct: 130 RRTPPLGGPLAKAATGAVECVPFIPVVNISRALEAIREKHIPIFGLAGEGALSLRDTAPT 189 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 AL+LGAEGKGLRP + + + + I++LNV+ AAA++LY Sbjct: 190 RTCALVLGAEGKGLRPGVRAVCDQLVAIPIDPQIESLNVATAAAISLYHLGR 241 >gi|327470414|gb|EGF15870.1| SpoU rRNA methylase [Streptococcus sanguinis SK330] Length = 246 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 105/276 (38%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + K H+ K R++ + + G H A Sbjct: 1 MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +++ + I ++ A RL + + V P+ + + + +A Sbjct: 40 ISSGAELI-RIFALAEYAERLADFSQM------IFVSPEILADLADSKTPQGIVAEVAFE 92 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L+ V DP N+G I+R+A A DG+ + + + +S Sbjct: 93 REKIPAELSGRY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+ S S + + + AL++G EG+G+ Sbjct: 150 QGSHFHLPVYRMDTADFIRLARSSRLPILASTLSFASIDYREVGSKESFALVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P+ A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPEMTAAADILIHISMRGQAESLNVAVAAGILIFHL 245 >gi|312875558|ref|ZP_07735559.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2053A-b] gi|311088812|gb|EFQ47255.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2053A-b] Length = 253 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 100/249 (40%), Gaps = 6/249 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K+++ QK ++ + + G H V AL+ +K ++ T+ + +L Sbjct: 8 NNSIIKQIRKLKQK-KYRKDQMSYLIEGFHLVKEALD-MEQKYEYVIGTQETINKLKLTN 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + + V D++ E + ++LD++ DP Sbjct: 66 KIFDK-SIILVNQAICDQLSDTENSQDIFMVLPINQPH---SFSFKFGKWVILDNLTDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A DG+I + + ++ + +S G+ H+ ++ L ++ Sbjct: 122 NVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQTDIEQVLLDFKNNG 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + L ++ LI+G E G+ + Q ++ + G ++LN Sbjct: 182 LPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYIPIKGKAESLNA 241 Query: 266 SNAAAVALY 274 + AA + +Y Sbjct: 242 AVAAGIMIY 250 >gi|237784961|ref|YP_002905666.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] gi|237757873|gb|ACR17123.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] Length = 320 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 64/287 (22%), Positives = 125/287 (43%), Gaps = 22/287 (7%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ +H K+ + + + + + + + G + V L Sbjct: 37 TPKAEDRVYH--KAHKRKVEQQ-------RKASGRHDRRNLHGSELVVGRNPVVECLRA- 86 Query: 65 SRKIFQLLATK--NALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + RL + V VP +D++ G +HQGL L Sbjct: 87 KVSATALYVAEGTDNDDRLTEAVRVAGDRAITVLEVPRIELDRMTG-NGMHQGLGLLVPE 145 Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + ++ L++ LD++ DP N+GA++RS AF G++ +R S S + Sbjct: 146 YQYVDVQDLIDRAHASSSTGLIVCLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVT 205 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 AV ++++G +P + +N+T AL++ G+Q +GL + L+ + +++ Sbjct: 206 AVAWRTSAGTAARLPVAKATNMTRALKQFQKEGYQVVGLDAGGDHTLDTYDGTTPVVVVV 265 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G+EGKGL ET ++ + M +++LN S AA V L Sbjct: 266 GSEGKGLSRLVSETCDTIMSIPMADNVESLNASVAAGVVLSEFARQR 312 >gi|169629410|ref|YP_001703059.1| tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC 19977] gi|169241377|emb|CAM62405.1| Possible tRNA/rRNA methyltransferase [Mycobacterium abscessus] Length = 250 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 44/242 (18%), Positives = 92/242 (38%), Gaps = 7/242 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + + G + V AAL + + + ++ AT A+ R PV+ V Sbjct: 9 RPAARRRAGLFLAEGPNLVEAALRSGA--VERIFATDAAIERFVDLLAEA---PVRRVTE 63 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + + +A + + + R+ + ++V +++P N G ++R A A Sbjct: 64 RAAKALSDTVTPVGLVAQCRTVVSTWSQVTARSPRFVIVAVDISEPGNAGTLIRVADAMG 123 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK--MHSWGFQTIGLSSDS 216 D ++ + ++++G++ +IP + ++ L D Sbjct: 124 ADAVVLAGNSVDPFNGKSLRASAGSIFNIPVVPEGDVGAIAADLAQTGVALLATTLDGDL 183 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + A G E GL T AT ++ M G ++LN+++AA++ LY T Sbjct: 184 SLDEADAVLAGPCAWFFGNEAHGLDGATAALATHRINIPMRGGAESLNLASAASICLYAT 243 Query: 277 QN 278 Sbjct: 244 AR 245 >gi|322385982|ref|ZP_08059622.1| SpoU rRNA methylase [Streptococcus cristatus ATCC 51100] gi|321269965|gb|EFX52885.1| SpoU rRNA methylase [Streptococcus cristatus ATCC 51100] Length = 286 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 56/276 (20%), Positives = 104/276 (37%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + K H K R E+ + G H A Sbjct: 41 MNIITSKANNVVKKAKKLHQKKYR---------------------SESYLIEGWHLFEEA 79 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +R I ++ A RL + V P+ + + + +A Sbjct: 80 LASQAR-ILRIFALAEYEERLAAFSQT------IFVSPEILSDLADSKTPQGIVAELAFE 132 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L+ V DP N+G I+R+A A G+ + + + +S Sbjct: 133 EQNIPEKLEGAY---LFLEDVQDPGNVGTIIRTADAAGYQGVFISSHSADIYNLKTLRSM 189 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+S S S+ ++ K++ L++G EG+G+ Sbjct: 190 QGSHFHLPIYRVSREDMLALARQSDLQILASTLSEYSVDYQKVEKHEDFLLVMGNEGQGI 249 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + E A + H+ M G ++LNV+ AA + ++ Sbjct: 250 SQEMTEVADVLVHISMKGQAESLNVAVAAGILMFAL 285 >gi|228471324|ref|ZP_04056127.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas uenonis 60-3] gi|228306901|gb|EEK16009.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas uenonis 60-3] Length = 247 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 99/240 (41%), Gaps = 13/240 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106 +YG+H ++ +L + S I ++ K A + PV VP + +++ Sbjct: 6 LIYGIHALTESLASHSD-IDKIYMKKGAATGELLEIKRTARAQGIPVMEVPAERLNRFT- 63 Query: 107 KEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ +P+ L+ +++LD V D N GAI R+ Sbjct: 64 -RGAHQGVVALISPITYTRLESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCECAGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 I+ +R S S +A +++GAL IP R +L A + + G Q +G D+ Sbjct: 123 HAIVIPERDSVSVTADAVNASAGALMRIPVCRERDLVTACRFLRDSGLQLVGADVDATTN 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +++G+E KG+ + T + G I +LNVS A + LY Sbjct: 183 YTSLPMTPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEVVRQ 242 >gi|256824258|ref|YP_003148218.1| rRNA methylase, , group 3 [Kytococcus sedentarius DSM 20547] gi|256687651|gb|ACV05453.1| rRNA methylase, putative, group 3 [Kytococcus sedentarius DSM 20547] Length = 323 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 74/271 (27%), Positives = 121/271 (44%), Gaps = 10/271 (3%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NA 77 + RR + + + + + G + V AL P+ ++ + + Sbjct: 51 KRARRAEKSAGGQRPVRGSKARSGKDSTEMVLGRNAVLEALRTQVPATHLYVASTIESDD 110 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNS 132 + P+ +D++ E VHQGL L+ P LD + Sbjct: 111 RVKEALRLASEQGVPLLEAGRPELDRLSNGE-VHQGLVLQVPPYTYGDLDTLLDATADVT 169 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L + LD + DP N+GAI+RSA AF GII T+R S +A ++++GA +P R+ Sbjct: 170 PLFVALDGITDPRNLGAIIRSAAAFGAHGIIITERRSAGVTAAAWRTSAGAAARLPVARV 229 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSM 251 +NL ALQ++ S G IGL +D L D + +++G+EGKG+ T+E + Sbjct: 230 TNLNRALQELRSQGIFVIGLDADGDVELPGLPLAPDPLVVVVGSEGKGISRLTREHCDQI 289 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M ++LN AAAV LY A+ Sbjct: 290 VSIPMTAGNESLNAGTAAAVTLYEIARERAQ 320 >gi|126725688|ref|ZP_01741530.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales bacterium HTCC2150] gi|126704892|gb|EBA03983.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales bacterium HTCC2150] Length = 266 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 97/253 (38%), Positives = 140/253 (55%), Gaps = 11/253 (4%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++ + ++L+G+H V AL NP R++ +L+ TKNA RL DA + Sbjct: 12 KERQKRAEDALTVWLFGIHAVRDALLNPKRELLKLVVTKNAADRLA-DAIEQSGITPEIC 70 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILR 152 P+ + +VHQG ALE PL L ++ L+ LD V DPHN+GAILR Sbjct: 71 EPRKFSAPLDAGSVHQGAALEVKPLKWTDLQSIAIDAGPHGRLLFLDRVTDPHNVGAILR 130 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA +I TKR + E+ LAK+ASGALE PY+RI NL D +++M + G+ +GL Sbjct: 131 SAEVLGAAAVIATKRNAAPETGALAKTASGALERQPYVRIRNLADTMEEMKALGYILLGL 190 Query: 213 SSDSKKPLEQEIK------NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 +++ +E I IAL+LGAEG GLR KT+ T ++ + G +LNVS Sbjct: 191 DGEAEDTMETVIASTLANGPRPIALVLGAEGPGLRDKTKATCDALMRIDSAGAFGSLNVS 250 Query: 267 NAAAVALYITQNH 279 NAAAV+LY + + Sbjct: 251 NAAAVSLYASLQN 263 >gi|332970580|gb|EGK09567.1| tRNA/rRNA methyltransferase [Psychrobacter sp. 1501(2011)] Length = 278 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 55/286 (19%), Positives = 103/286 (36%), Gaps = 21/286 (7%) Query: 2 NLISKKK--SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59 ++I+ K + I S K + K ++ +SR + L GVH + A Sbjct: 3 DIITNKYSNNPVITSDK----------NPTAKLAKALLTQSRQRKKAGQTVLEGVHLIEA 52 Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLP-----HPFPVKTVPPQTIDKIVGKEAVHQGL 114 AL +++ + V I + + Sbjct: 53 ALQANHIPEQIIISYSGLSHPDVQQLLASLSGYNLDNKLTVVSDSVYQSITTLGNGVEIM 112 Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 A+ P + + ++L+ V D N+G +LR+A A II TK + + S Sbjct: 113 AIVNVPQHNLHTLKSPITTDCLILNDVQDNGNVGTLLRTAAAVGIKNIICTKGSAQAWSP 172 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 ++ GA + + L + + T S + + ++ N +A ++G Sbjct: 173 KTMRAGMGAQFGLTIYEGIEADEVLSYLRLPVYATS---SHTDNIIYKQNLNRPVAWVMG 229 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 EG+G+ + AT L P ++LNV+ A A+ +Y T Sbjct: 230 HEGQGVCEAIMKEAT-PVALPQPNGQESLNVAIAGALCMYETLRQR 274 >gi|299771793|ref|YP_003733819.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1] gi|298701881|gb|ADI92446.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1] Length = 249 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 12/242 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 YGVH+V + L ++ L K RL L V+ +++K+ G Sbjct: 8 YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGLP 67 Query: 109 AVHQGLALETAPLL---SPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ P LD + LL+ LD V DPHN+GA +R+A A + Sbjct: 68 -FHQGVVAAVRPHPVLNEQDLDQILRETPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPL 220 I + S S + K A+G E + +I+++NL K + + +S PL Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDESALPL 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + + +++GAE GLRP TQ ++ M G +++LNVS A +ALY Sbjct: 187 QKCDFSGAVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246 Query: 281 AK 282 ++ Sbjct: 247 SE 248 >gi|297624394|ref|YP_003705828.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM 17093] gi|297165574|gb|ADI15285.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM 17093] Length = 276 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 92/270 (34%), Gaps = 8/270 (2%) Query: 18 SHYAKL-RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 +L + + + + ++ R ++ + G V+ AL R + +L Sbjct: 7 PQRRRLDSSKNPEVRALAKL-KERRARAREGRFLVEGTREVTRALEAG-RALERLYVCPE 64 Query: 77 ALARLDWDA----NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132 L V + P + +EA +AL L + + Sbjct: 65 RLRDEGRALVARCQAEGAASVTELSPAAFRVLSHREAPDGVIALVRTALTTLRDLQLAAD 124 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L++V+D + P N+GA+LR+A + +S Sbjct: 125 ALVLVVDGLEKPGNLGALLRTADGVGAAAVFA-TGAGTDFENPNVIRSSMGSVFSLPTLR 183 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + + L + + GF+ + + + + AL+LG E GL E A Sbjct: 184 APAAELLAWLRAQGFRLVAATPHADTLFWDAPYTGRTALLLGTEHDGLSALWLEAADVRV 243 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G+ +LNV+ A A+ LY + Sbjct: 244 TIPMGGLADSLNVATAGALLLYEALRQRRR 273 >gi|309803139|ref|ZP_07697236.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 11V1-d] gi|309805268|ref|ZP_07699320.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 09V1-c] gi|312871826|ref|ZP_07731914.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 3008A-a] gi|312873041|ref|ZP_07733101.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2062A-h1] gi|312874184|ref|ZP_07734218.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2052A-d] gi|315653629|ref|ZP_07906549.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195] gi|325912046|ref|ZP_08174444.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 143-D] gi|325912663|ref|ZP_08175046.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 60-B] gi|329920097|ref|ZP_08276928.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 1401G] gi|308164647|gb|EFO66897.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 11V1-d] gi|308165502|gb|EFO67733.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 09V1-c] gi|311090254|gb|EFQ48664.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2052A-d] gi|311091563|gb|EFQ49947.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2062A-h1] gi|311092768|gb|EFQ51124.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 3008A-a] gi|315488991|gb|EFU78633.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195] gi|325475996|gb|EGC79164.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 143-D] gi|325478084|gb|EGC81213.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 60-B] gi|328936551|gb|EGG32995.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 1401G] Length = 255 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 100/249 (40%), Gaps = 6/249 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K+++ QK ++ + + G H V AL+ +K ++ T+ + +L Sbjct: 10 NNSIIKQIRKLKQK-KYRKDQMSYLIEGFHLVKEALD-MEQKYEYVIGTQETINKLKLTN 67 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + + V D++ E + ++LD++ DP Sbjct: 68 KIFDK-SIILVNQAICDQLSDTENSQDIFMVLPINQPH---SFSFKFGKWVILDNLTDPG 123 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A DG+I + + ++ + +S G+ H+ ++ L ++ Sbjct: 124 NVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQTDIEQVLLDFKNNG 183 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + L ++ LI+G E G+ + Q ++ + G ++LN Sbjct: 184 LPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYIPIKGKAESLNA 243 Query: 266 SNAAAVALY 274 + AA + +Y Sbjct: 244 AVAAGIMIY 252 >gi|221638657|ref|YP_002524919.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sphaeroides KD131] gi|221159438|gb|ACM00418.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sphaeroides KD131] Length = 261 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 89/238 (37%), Positives = 131/238 (55%), Gaps = 8/238 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++SR + E ++L+G+H V AL NP R+ +L+ TKNA RL + V Sbjct: 13 KERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLGEAIA-ESGLEPEIV 71 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILR 152 P+ + + +VHQG ALE PL +L+ LL++LD V DPHN+GA+LR Sbjct: 72 DPRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLR 131 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--- 209 SA F +I R+S E+ LAK+ASGALE PY+R+ NL + ++K+ + G+ Sbjct: 132 SAEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGL 191 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G ++ + Q +AL+LGAEG GLR KT+ET + + G +LNVSN Sbjct: 192 EGEAAMTLAEGLQGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGGFGSLNVSN 249 >gi|118602547|ref|YP_903762.1| RNA methyltransferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567486|gb|ABL02291.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 247 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 107/244 (43%), Gaps = 9/244 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPH--PFPVKTVPPQTID 102 +++ + H V A L + ++ K RL+ + + V+ +D Sbjct: 2 SKSIIITSFHAVQAQLKSNPTCFIKVFILNKRCDKRLNTLTSEFNNFGISVQRCTKIQLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVA 156 K+ + A P L + + +++LD + DP N+GA LRSA A Sbjct: 62 KLSNHQTHQGVAAEILLPTLPDQGELISYVSKLDNAGFILILDSIQDPRNLGACLRSANA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 ++ K S ++++ K+++GAL + +++NL+ ++ + IGL Sbjct: 122 AGVHCVVINKNGSAPINSLVHKTSAGALNQLKIFQVTNLSRTIKALQQKNIWVIGLDGSV 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + Q A+I+GAEG GLR T+++ +A + M G +++LNVS A V L+ Sbjct: 182 NISIYQIDLTIPNAIIMGAEGSGLRRLTKQSCDQLAKIPMQGKVESLNVSVATGVTLFEV 241 Query: 277 QNHF 280 Sbjct: 242 NRQR 245 >gi|46199993|ref|YP_005660.1| 23S rRNA methyltransferase [Thermus thermophilus HB27] gi|55980265|ref|YP_143562.1| RNA methyltransferase [Thermus thermophilus HB8] gi|46197620|gb|AAS82033.1| 23S rRNA methyltransferase [Thermus thermophilus HB27] gi|55771678|dbj|BAD70119.1| RNA methyltransferase, TrmH family [Thermus thermophilus HB8] Length = 238 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 110/236 (46%), Gaps = 13/236 (5%) Query: 50 FLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++YG + V AL R++ + L + P VP +D ++ + Sbjct: 2 WIYGRNPVLEALRAGRARRVLVARGVEGWLLKELERL----GAPYTLVPRIELDTLL-RT 56 Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+A E +L+ + LL+ LD V DP N GA++RSA+A G Sbjct: 57 THHQGIAAEVEDPPYASLEDALRLAASRKEPPLLVALDGVTDPRNYGAMIRSALALGAHG 116 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +++ +R + S + K+++GA +P +++ NL L+ + G GL +K Sbjct: 117 VVSEERRAAPLSPLALKASAGAALKLPVVKVKNLPRTLKALKEEGLWVYGLDVRGEKAPW 176 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + L++G+EG+G+R +ET + + + ++LN S A +ALY + Sbjct: 177 ELDYARPLVLVVGSEGEGMRRLVRETCDELFRIPIREEAESLNASVALGIALYQAR 232 >gi|262091797|gb|ACY25385.1| rRNA methylase [uncultured actinobacterium] Length = 259 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 65/272 (23%), Positives = 110/272 (40%), Gaps = 18/272 (6%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQ 70 I SL H A+ K + ++ + G+ AL + +I Sbjct: 2 IESLNSPHVAR-------VKALIG-SRGVKERKAAGQFVAEGLQCAREALKSNSGPRIET 53 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 L T N +++ ++L F V V + + ++ LA+ T P ++ A+ Sbjct: 54 LYLTNNGRSKVAEISDLSA-FNVVDVSDEVMKEMSETITPQGILAVCTIPQITFDSIALN 112 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 S+ + L V DP N G ILRSA AF+ D +IT+ S + +S +G+L HIP Sbjct: 113 GSRRFIYLSEVQDPGNAGTILRSADAFAMDAVITSPGSVDMYSPKVVRSTAGSLWHIPVF 172 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT- 249 L + L + S + + + G E +GL T + A Sbjct: 173 ESWRLEELLNLGLNAFSLGAEGSKSLSQYQM----SGDTLAVFGNEARGLS--TAQNADS 226 Query: 250 -SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + MPG ++LN+S AA++ +Y N Sbjct: 227 IDVVSIPMPGNAESLNLSAAASIVMYHLSNMR 258 >gi|255327697|ref|ZP_05368763.1| RNA methyltransferase, TrmH family, group 3 [Rothia mucilaginosa ATCC 25296] gi|255295371|gb|EET74722.1| RNA methyltransferase, TrmH family, group 3 [Rothia mucilaginosa ATCC 25296] Length = 328 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 70/294 (23%), Positives = 122/294 (41%), Gaps = 20/294 (6%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ +H K R Q + + + G + V AL Sbjct: 35 TPKAEDRVYH--KAHKMKRAAERRAATGTNRKFQTRLGGKRASDELVTGRNAVLEALRTE 92 Query: 65 SRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 + ++ + R P+ +P +D++ +VHQG+A++ P Sbjct: 93 IPSKHLYIMSRVEVDDRVREIMTIANKRNIPMLEIPRSELDRLTD-GSVHQGVAMQIPPY 151 Query: 122 LSPT-----LDAVRNSQ--------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 P LD + L + LD + DP N+GAI+RS AFS DG+I +R Sbjct: 152 KYPDATDLVLDTMERWHSGKLSTPPLFVALDGITDPRNLGAIIRSVSAFSGDGVIIPERR 211 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-ND 227 S + +A K+++GA IP +NLT +Q+ G IGL L N+ Sbjct: 212 SAAVTAGAWKTSAGAAARIPVAMATNLTRVIQQAKEQGIFVIGLDGGGDIELPALELANE 271 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +++G+EGKGL E + + + +++LN + A + LY A Sbjct: 272 PLCVVVGSEGKGLSRLVTENCDQIVSIPIDSAMESLNAAMAVGITLYDVSRRRA 325 >gi|114797823|ref|YP_761366.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444] gi|114737997|gb|ABI76122.1| RNA methyltransferase, TrmH family, group 3 [Hyphomonas neptunium ATCC 15444] Length = 269 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 95/261 (36%), Positives = 148/261 (56%), Gaps = 11/261 (4%) Query: 24 RRNHRDY--KKMQSFNQKSRHTSQPE-NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 R + D + + NQ+ + ++L+G H V AAL NP+RK LLAT+NA + Sbjct: 8 RPPNTDVATRPGRPENQRFSRRDEEGGPVWLWGTHAVMAALANPARKFHTLLATENAAQK 67 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVL 138 L + + ID + AVHQG+AL PL L+ V + + VL Sbjct: 68 LP-----AGVISPQLATAKEIDNRLPPGAVHQGIALRADPLEEAILEDVIAAGATRIAVL 122 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V+DPHN+GAI RSA AF +G++ R +P + ++AKSA+GA+E + IR N+ A Sbjct: 123 DQVSDPHNLGAIFRSAAAFGFEGLVLQTRNAPPITGIVAKSAAGAIETVTEIRAVNIARA 182 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMP 257 L+++ F T+GL+ +S + L++ +K K+A++LGAEG GLRP + + +A + + Sbjct: 183 LEQLAEADFHTVGLAGESTRSLDEAVKGAAKVAIVLGAEGSGLRPAVAKACSELARIPIA 242 Query: 258 GIIKALNVSNAAAVALYITQN 278 +++LNVSNAAA+A Y Sbjct: 243 AQMESLNVSNAAAIAFYEASR 263 >gi|297198451|ref|ZP_06915848.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083] gi|197716141|gb|EDY60175.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083] Length = 309 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 93/266 (34%), Gaps = 11/266 (4%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 + + +++ + G V A + + +L AT A R Sbjct: 37 ISPRSPRVSAARRLAKRN-FRGKERLFLAEGPQAVREAAGHG---LVELFATVEAAERYA 92 Query: 83 WDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 V I I + + +L+ VL + Sbjct: 93 DIIGEARAVQARVHLAAEDVIADISTTVTPQGLVGICRFLDTPFEEILAARPKLVAVLAN 152 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N G +LR A A + ++ T + +++ G+L H+P + +A++ Sbjct: 153 VRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLFHLPVAVGVPVEEAVE 212 Query: 201 KMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + G + + L+ E A + G E GL +T+ A ++ + + Sbjct: 213 GLRRAGVRILAADGAGTDDLDAELDKGTMGGPTAWVFGNEAWGLPEETRALADAVVRVPI 272 Query: 257 PGIIKALNVSNAAAVALYITQN-HFA 281 G ++LN++ AAAV LY + A Sbjct: 273 HGKAESLNLATAAAVCLYASARAQRA 298 >gi|254302088|ref|ZP_04969446.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322280|gb|EDK87530.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 234 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 4/226 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL N + I +L K + D + + I+ G Sbjct: 4 IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKIENSQGV 62 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + A ++ L+++LD + DP N GAI+RSA F D II +R Sbjct: 63 AVYISNYDYYKDFDEAYEELAGKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPER 122 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + + K+++GA+E++ +++NL+D + K+ + G ++ +E + Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAVGEANINYNEEDYPN 182 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K+ L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 183 KVVLVLGNEGSGIRKKVREHCDKLVKIPMYGQINSLNVSVASGILL 228 >gi|148239400|ref|YP_001224787.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803] gi|147847939|emb|CAK23490.1| Possible tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803] Length = 456 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 72/279 (25%), Positives = 119/279 (42%), Gaps = 17/279 (6%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN------LFLYGVHTVSAALNNPSRKIFQ 70 S + R R + + F +K R S + L+G H AAL R I + Sbjct: 121 RSRSPRSDRQDRSDRPDRRFEEKPRGESSSHSADPVADDLLWGRHATQAALEAG-RPIHR 179 Query: 71 LLATKNAL--ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 + T R V+ V + ++ G A Sbjct: 180 IWCTSEMRSAPRFMQLLRDAKSSGVLVEEVTWARLAQMTGGAVHQGIALQTAAADTLDLA 239 Query: 127 DAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + LL+ LD + DPHN+GAI+RSA A G++ +R S + +AK A Sbjct: 240 DLIEGCAALQEAPLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVA 299 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 +GALEH+P R+ NL +L+ + G++ +GL+ + + LE+ + ++ G+EG+GL Sbjct: 300 AGALEHLPVARVVNLNRSLETLKDAGYRVVGLAEEGDQTLEEADLEGPLVVVTGSEGQGL 359 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 T+ + + + G+ +LN S A A+ LY Sbjct: 360 SMLTRRHCDQLIRIPLRGVTPSLNASVATALCLYEVARR 398 >gi|259500536|ref|ZP_05743438.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335] gi|302191226|ref|ZP_07267480.1| rRNA methylase [Lactobacillus iners AB-1] gi|309810255|ref|ZP_07704100.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 2503V10-D] gi|259167920|gb|EEW52415.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335] gi|308169527|gb|EFO71575.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 2503V10-D] Length = 255 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 101/249 (40%), Gaps = 6/249 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K+++ QK ++ + + G H V AL+ +K ++ T+ + +L Sbjct: 10 NNSIIKQIRKLKQK-KYRKDQMSYLIEGFHLVKEALD-MEQKYEYVIGTQETINKLKLTN 67 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + + V D++ E + ++LD++ DP Sbjct: 68 KIFDK-SIILVNQAICDQLSDTENSQDIFMVLPINQPH---SFSFKFGKWVILDNLTDPG 123 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A A S DG+I + + ++ + +S G+ H+ ++ L ++ Sbjct: 124 NVGTIIRTADAASFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQTDIEQVLLDFKNNG 183 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + L ++ LI+G E G+ + Q ++ + G ++LN Sbjct: 184 LPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYIPIKGKAESLNA 243 Query: 266 SNAAAVALY 274 + AA + +Y Sbjct: 244 AVAAGIMIY 252 >gi|114327047|ref|YP_744204.1| 23S rRNA Gm2251 methyltransferase [Granulibacter bethesdensis CGDNIH1] gi|114315221|gb|ABI61281.1| 23S rRNA Gm2251 methyltransferase [Granulibacter bethesdensis CGDNIH1] Length = 441 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 86/235 (36%), Positives = 135/235 (57%), Gaps = 2/235 (0%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++L+G+H V AAL NP+R++ +LL T+ A A L P + +D+++G Sbjct: 206 GAVWLHGLHAVEAALRNPARRLRRLLLTEEAEATLAERLPPPWALVAERTERAHMDQLLG 265 Query: 107 KEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 E+VHQG+AL L SP L + + ++VLD V+DP N+GAILRSA AF +I Sbjct: 266 TESVHQGIALLADKLPSPPLGEILAQRPGPVLVLDQVSDPRNVGAILRSAAAFQACCVIV 325 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 R +P ES +AK+ASGAL+ +P +R+ N+ L + + +GL ++ + Sbjct: 326 QDRNAPEESGTMAKAASGALDRLPMLRVVNIARTLAALKAADLWVVGLDAEGAPLSGPAL 385 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++AL++GAEG GLR T+E+ + L M +++LNVS A A+ALY + Sbjct: 386 GKRRVALVMGAEGDGLRRLTRESCDEIVSLAMAEGMESLNVSVATAIALYEISRN 440 >gi|45658662|ref|YP_002748.1| rRNA methylase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|294827733|ref|NP_710968.2| rRNA methylase [Leptospira interrogans serovar Lai str. 56601] gi|45601906|gb|AAS71385.1| rRNA methylase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|293385576|gb|AAN47986.2| rRNA methylase [Leptospira interrogans serovar Lai str. 56601] Length = 274 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 100/282 (35%), Gaps = 26/282 (9%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 I+ +EK+ ++ + +H F+ G + A + Sbjct: 9 ITSFSNEKLKTISNLKEK-------------------KHRETSGLFFIEGYREILRAQKS 49 Query: 64 PSRKI-FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 K L + + L ++ VP + +K+ ++ +A Sbjct: 50 GKIKFQNILFSPECFLGENEFSLIRSIGTKNIKVPKKIFEKVSYRDRPDGLIATAFFFET 109 Query: 123 SPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 +++ ++V++ V P N+G ILR+A ++ + + Sbjct: 110 GLDTFQNKSNIFKNLKPILVIEGVEKPGNLGTILRTAEGAGFHTVLVADPKLDLFNPNVI 169 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 ++++GAL + + + ++T+ ++ ++ K KIAL+ G+E Sbjct: 170 RASTGALFTLEVYLGEIK-LIYEILKKNQYRTLAVTPEATKHYYNADLKGKIALVFGSEQ 228 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 GL + + L M G +LN++ +A + +Y Sbjct: 229 YGLSTYARNNSDEYVSLPMFGESDSLNLAMSAGIVMYEVIRQ 270 >gi|258545032|ref|ZP_05705266.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Cardiobacterium hominis ATCC 15826] gi|258519730|gb|EEV88589.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Cardiobacterium hominis ATCC 15826] Length = 243 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 8/234 (3%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI---VG 106 G+HTV L + + +L N ++ PV+TV I+ + V Sbjct: 9 GIHTVQQLLADGH--VLRLYVADNKKSKNLTALVGEAQARGVPVETVALYEIEMMLPGVR 66 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 + V A LL+VLD + DPHN+GA LRSA A ++ Sbjct: 67 HQGVAAVSEARGQAADWADAIAGVEKPLLLVLDSIQDPHNLGACLRSAAAAGVHAVLIPN 126 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + + V+ K A GA E +P R+SNL +++M G +G + + + L Sbjct: 127 SRAADVTPVVEKVACGATEILPLFRVSNLRREVERMQRQGIWVVGGAGGAAQSLYATDLT 186 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A+I+G EG+G+R +E + + M +++LNVS A V L+ + Sbjct: 187 VPLAVIVGNEGEGIRHGLREQCDFLVQIPMAEGMESLNVSVACGVMLFEARRQR 240 >gi|257068448|ref|YP_003154703.1| rRNA methylase, putative, group 3 [Brachybacterium faecium DSM 4810] gi|256559266|gb|ACU85113.1| rRNA methylase, putative, group 3 [Brachybacterium faecium DSM 4810] Length = 320 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 108/242 (44%), Gaps = 12/242 (4%) Query: 46 PENLFLYGVHTVSAALNN--PSRKIFQLL-ATKNALARLDWDANLPHPFPVKTVPPQTID 102 P + + G + V AL P+ ++ ++ + R PV +D Sbjct: 70 PGSDQVAGRNAVLEALREDVPATQLTVMVRLDADERVREIMRLATARGLPVAEASRTDLD 129 Query: 103 KIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++ +VHQG+AL P + + LL+ LD + DP N+GAILRSA Sbjct: 130 RMTDH-SVHQGVALTIPPYEYADVQDLLRIAEERFEPPLLVALDGITDPRNLGAILRSAD 188 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF G+I +R S S +A + K A+GA + +++NL L + +GL ++ Sbjct: 189 AFGAHGVILPERRSVSMTASVWKVAAGAAGRVRVAQVTNLNRTLTALKEQDVFALGLDAE 248 Query: 216 SKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L++GAEGKGL ++ + + M G ++LN S AAA+ALY Sbjct: 249 GDVTTRGLELGTQPAVLVVGAEGKGLSRLARDICDQVVSIPMGGRAESLNASVAAAIALY 308 Query: 275 IT 276 Sbjct: 309 EI 310 >gi|171463420|ref|YP_001797533.1| RNA methyltransferase, TrmH family, group 3 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192958|gb|ACB43919.1| RNA methyltransferase, TrmH family, group 3 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 255 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 105/241 (43%), Gaps = 11/241 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPF---PVKTVPPQTIDKIVG 106 L G H V A L + + R D + + + K+ G Sbjct: 5 LVGFHVVQARLRVDPNSLKSVYFDSGRRDRRMGDFLKQAEEILGERLHAADAERLHKLTG 64 Query: 107 KEAVH-------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + + + T + +++ L ++LD V DPHN GA LR A Sbjct: 65 HDRHQGVVALAEKMAIVRTITEVVEDVESTHEKPLFLILDGVTDPHNFGACLRVADGAGV 124 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D + K S S +A ++K + GA E +P I ++NL ++++M G IG ++ K Sbjct: 125 DAAVIPKDRSASINATVSKVSGGAAEVMPVITVTNLVRSMKEMQEAGVWLIGTDDEATKS 184 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + IA+++GAEG+G+R T+ET + + M G++ +LNVS A+ V LY Sbjct: 185 IYDIDLTGSIAIVMGAEGEGMRRLTKETCDELVRIPMQGVVSSLNVSVASGVCLYEVLRQ 244 Query: 280 F 280 Sbjct: 245 R 245 >gi|313887556|ref|ZP_07821239.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846434|gb|EFR33812.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei ACS-146-V-Sch2b] Length = 235 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 97/237 (40%), Gaps = 12/237 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV--PPQTIDKIVGK 107 ++YG V A+ N ++ ++ KNA + + V TV + ++++ G Sbjct: 3 YIYGRGPVMEAIKN--EEVEKVYVGKNASGSIKKILGMARDAKVPTVTSDNEKLEELAG- 59 Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQ + + L+ + + +LD + DPHN GAI RS F D Sbjct: 60 TKNHQAVVALVSDFEYIELEDLIRKLEDKEDARIFILDKIEDPHNFGAIARSCNFFGIDA 119 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II R + + + + KS++GA+ + + + I + + + Sbjct: 120 IIFPNRRAATVNDTVVKSSAGAI-YDIDVCKVSNISQSIDKLKEAGFWIYATDLEGEDIR 178 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + K A+++G EGKG+ + + + +LN S AAA+ +Y + Sbjct: 179 ECDFSGKAAVVIGNEGKGVSKNILKNSDKTITIPNFSDFDSLNASVAAAIVMYEIRR 235 >gi|171059516|ref|YP_001791865.1| tRNA/rRNA methyltransferase SpoU [Leptothrix cholodnii SP-6] gi|170776961|gb|ACB35100.1| tRNA/rRNA methyltransferase (SpoU) [Leptothrix cholodnii SP-6] Length = 277 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 52/256 (20%), Positives = 97/256 (37%), Gaps = 8/256 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +H K ++ ++ + ++L G H A L R ++ L Sbjct: 26 SHSHALVKDLRRLAHEAGAYRKLGRIWLEGDHLARALLARGGRPQICVVGASAWLQPNWR 85 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + L P V + + +I E+ L AP ++ +VLD + D Sbjct: 86 ELALAAP-EVVVIADNLLPEISSLESPAPLGFLIAAPAARVP---TQSGVNTLVLDRLQD 141 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LRSA A ++ K + S + ++ GA + ++ Sbjct: 142 PGNVGTLLRSAAALGVKQVLAMKGTAALWSPKVLRAGMGAHF----ALHLVEGVEVNELD 197 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + SS +++ L + A +LG EG+G+ + PG ++L Sbjct: 198 TLDLPLLATSSHAEQSLHEVRLPQPCAWVLGHEGQGVAEAVMRRCALTVRIPQPGGEESL 257 Query: 264 NVSNAAAVALYITQNH 279 NV+ AAA+ LY + Sbjct: 258 NVAAAAAICLYESARQ 273 >gi|253563391|ref|ZP_04840848.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251947167|gb|EES87449.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 270 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 90/248 (36%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + + ++R S + AL+ + L K+ + Sbjct: 17 FSTLTEAQLRNRIDSDRGIFIAESPKVIQVALDAGYEPLAILCEQKHIIGDAAVIIERCG 76 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + G L P L + R ++ ++V+D V D NIGA Sbjct: 77 DIPVYTGKRDILALLTGYTLTRGVLCAMRRPELRSVEEVCREAKRIVVIDGVVDTTNIGA 136 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T+ + + + G++ + + I L + Sbjct: 137 IFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSIFLVSWTWIDGSLSRLGDLGFRTVAM 196 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 K+A+I+G EG GL +T A + + M + +LNV+ AA Sbjct: 197 ALTDDSISIDDPVLKTEPKLAIIMGTEGDGLPYETISEADYVVRIPMSHSVDSLNVAAAA 256 Query: 270 AVALYITQ 277 +VA + + Sbjct: 257 SVAFWELR 264 >gi|118586220|ref|ZP_01543685.1| tRNA/rRNA methyltransferase [Oenococcus oeni ATCC BAA-1163] gi|118433349|gb|EAV40050.1| tRNA/rRNA methyltransferase [Oenococcus oeni ATCC BAA-1163] Length = 254 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 72/251 (28%), Positives = 122/251 (48%), Gaps = 11/251 (4%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVK 94 +K + +YGVH L N + I +L +K+ + V+ Sbjct: 2 RKLKVGRPVSEEIVYGVHASMETLENN-QTINKLYLSKSLAKNRAQQFRQTAEQNKIVVQ 60 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGA 149 V Q +D++ HQG+AL A LD + + L++LD + DPHN+G+ Sbjct: 61 EVDNQRLDELTNH-GNHQGIALSIAAYEYVPLDDILNGIKGHDPFLVILDEIEDPHNLGS 119 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ILR+A A DGII KR + + V+AK+++GA+EH+P R+ N+ + + K+ F Sbjct: 120 ILRTADATGVDGIIIPKRRAVQLTQVVAKTSTGAIEHVPVARVVNINNTIDKLKKANFWI 179 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + + +A+++G EGKG+ +T++ M + M G +++LN S AA Sbjct: 180 FGTDMKGADYTDWN-ADGPVAIVIGNEGKGISAQTKKKVDQMLTIPMIGHVQSLNASVAA 238 Query: 270 AVALYITQNHF 280 A+ +Y N Sbjct: 239 ALLIYQGFNSR 249 >gi|77462791|ref|YP_352295.1| tRNA/rRNA metyltransferase [Rhodobacter sphaeroides 2.4.1] gi|77387209|gb|ABA78394.1| tRNA/rRNA metyltransferase [Rhodobacter sphaeroides 2.4.1] Length = 261 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 89/238 (37%), Positives = 131/238 (55%), Gaps = 8/238 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++SR + E ++L+G+H V AL NP R+ +L+ TKNA RL + V Sbjct: 13 KERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLGEAIA-ESGLEPEIV 71 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILR 152 P+ + + +VHQG ALE PL +L+ LL++LD V DPHN+GA+LR Sbjct: 72 DPRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLR 131 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--- 209 SA F +I R+S E+ LAK+ASGALE PY+R+ NL + ++K+ + G+ Sbjct: 132 SAEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGL 191 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G +S + + +AL+LGAEG GLR KT+ET + + G +LNVSN Sbjct: 192 EGEASMTLAEGLEGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGGFGSLNVSN 249 >gi|126729168|ref|ZP_01744982.1| RNA methyltransferase, TrmH family, group 3 [Sagittula stellata E-37] gi|126710158|gb|EBA09210.1| RNA methyltransferase, TrmH family, group 3 [Sagittula stellata E-37] Length = 274 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 94/248 (37%), Positives = 138/248 (55%), Gaps = 8/248 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++++ S E ++L+G H V AL NP R +L+ T NA +L + Sbjct: 27 KEQAKRASAAETVWLFGHHAVRDALLNPRRVKLRLILTPNAAEKLGDAVAEA-GMEPEIS 85 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILR 152 P+ + ++VHQG ALE PL L+ V + L++LD V DPHN+GAILR Sbjct: 86 DPRRFAAPLDPQSVHQGAALEVKPLDWGKLEDVALSGEGALRLVLLDRVTDPHNVGAILR 145 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA F +I T+ ++ E+ LAK+ASGALE PY+R NL D + + G+ +GL Sbjct: 146 SAEVFGAQAVIGTRHHAAPETGALAKTASGALERQPYLRERNLADTITALQGIGYIVLGL 205 Query: 213 SSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +++ +E ++ IAL+LGAEG GLRPKT+ET ++ + +LNVSNAA Sbjct: 206 DGEAETTIEDAVEGKRDRPIALVLGAEGPGLRPKTRETVDALVKIPFAREFGSLNVSNAA 265 Query: 270 AVALYITQ 277 AVALY + Sbjct: 266 AVALYAVR 273 >gi|295101732|emb|CBK99277.1| rRNA methylases [Faecalibacterium prausnitzii L2-6] Length = 275 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 53/278 (19%), Positives = 99/278 (35%), Gaps = 12/278 (4%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 I + D H +L Y ++ ++R + + AL+ + + Sbjct: 2 PNIIEITDFHAPELDP----YARLTQNQLRNRLEPEKGIFIAESPKVIDRALDAGYKPVS 57 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 L+ K + PV T + + ++ G E L P P + Sbjct: 58 LLMERKQITGPAAGILSRCGDAPVYTADREMLAELTGFELTRGVLCAFRRPAPRPVEELC 117 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +N++ + VL+ + D N+GAI RSA A + D ++ + + G + +P+ Sbjct: 118 KNARRVAVLEGIVDSTNVGAIFRSAAALNMDAVLINPSCCDPLCRRAVRVSMGTVFQVPW 177 Query: 190 IRISNLTDALQKMHSWGFQ--------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 ++ + EQ K K+A++LG EG GL Sbjct: 178 GQLGETPADWPEKGMDILHSLGFKTAAMALSDRSVSIDDEQLAKEPKLAIVLGTEGDGLA 237 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 T + + M + +LNV+ A+AVA + Sbjct: 238 AGTIASCDYTVKIPMSHGVDSLNVAAASAVAFWQLGKQ 275 >gi|291556790|emb|CBL33907.1| rRNA methylase, putative, group 3 [Eubacterium siraeum V10Sc8a] Length = 254 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 101/243 (41%), Gaps = 12/243 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKI 104 +YG + V+ AL + I + K+A VK + + Sbjct: 16 SNEEIIYGKNAVTEALKA-EKPIDTVFVLKSAQGMNQIIALAKKQGIVVKDAGEDKLKAL 74 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 G + H G+A + + T++ + +++ D + DPHN+GAI+R+A A Sbjct: 75 CGDK--HGGVAAALSAVSYCTVEDILANAESKGKPPFIIICDEIQDPHNLGAIIRTAEAA 132 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S + + + K+++GA I + K + + Sbjct: 133 GADGVIIPKRRSATVNPTVFKTSAGAAA-WIKIARVSNLVDTIKTLKKHGVWVYGAEADG 191 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P+++ + +AL++G+EG GL +E + L M G + +LN S A + +Y Sbjct: 192 TPIDKADLSGALALVIGSEGFGLGKLVRENCDVVLSLPMFGKVNSLNASVCAGILMYEAV 251 Query: 278 NHF 280 + Sbjct: 252 KYR 254 >gi|326802929|ref|YP_004320747.1| RNA methyltransferase, TrmH family, group 3 [Aerococcus urinae ACS-120-V-Col10a] gi|326650933|gb|AEA01116.1| RNA methyltransferase, TrmH family, group 3 [Aerococcus urinae ACS-120-V-Col10a] Length = 253 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 63/254 (24%), Positives = 121/254 (47%), Gaps = 15/254 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTV 96 S + + + G H V AAL++ S+KI+Q + ++ P+ Sbjct: 2 SPKSKKGARDLVLGYHAVQAALDS-SQKIYQAYLQEGQHSKRHQAVEKGLQDRQIPISYR 60 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGA 149 + +D++ + A HQG LE A ++D + ++LD + DPHN+G+ Sbjct: 61 SKRDLDQLT-QGANHQGFVLEVAAYQYYSVDDLFQRAKELGEDPFFILLDGIMDPHNLGS 119 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ILR+A A GII K + + +AK ++GA+E++P R++N+T ++ + G Sbjct: 120 ILRTADACGAHGIIIPKHRAAGVTPTVAKISTGAIEYLPVARVTNMTQTIEALKEKGVW- 178 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + + + + IA+++G E KG+ P+ ++ + + M G +++LN S AA Sbjct: 179 VFGTDMEGQDYWDMDASLPIAVVIGNEEKGISPRVKKALDGVLTIPMRGHVQSLNASVAA 238 Query: 270 AVALYIT--QNHFA 281 A+ +Y + Sbjct: 239 ALVMYEVYGKRRLT 252 >gi|290961735|ref|YP_003492917.1| rRNA methylase [Streptomyces scabiei 87.22] gi|260651261|emb|CBG74383.1| putative rRNA methylase [Streptomyces scabiei 87.22] Length = 280 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 51/266 (19%), Positives = 96/266 (36%), Gaps = 9/266 (3%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 + + +++ + G V A + + +L AT A R Sbjct: 7 ISPRSARVTAARRLARRN-FRGKDRLFLAEGPQAVREAAGHGDTLV-ELFATAEAAERYA 64 Query: 83 WDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 + H V + I + + +L+ VL H Sbjct: 65 DIVSEAHAAGARVHLADETVVADISTTVTPQGLVGVCRFLDTPFAEILAARPRLVAVLAH 124 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N G +LR A A + ++ T + +++ G+L H+P + +A+ Sbjct: 125 VRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLFHLPVAVGVPVEEAVA 184 Query: 201 KMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + G + + + L+ E A + G E GL +T+E A ++ + + Sbjct: 185 GLRDAGVRILAADGAGEDDLDAELDKGTMGGPTAWVFGNEAWGLPEETRELADAVVRVPI 244 Query: 257 PGIIKALNVSNAAAVALYITQN-HFA 281 G ++LN++ AAAV LY + A Sbjct: 245 HGKAESLNLATAAAVCLYASARAQRA 270 >gi|254525374|ref|ZP_05137426.1| RNA methyltransferase, TrmH family, group 3 [Prochlorococcus marinus str. MIT 9202] gi|221536798|gb|EEE39251.1| RNA methyltransferase, TrmH family, group 3 [Prochlorococcus marinus str. MIT 9202] Length = 326 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 81/294 (27%), Positives = 140/294 (47%), Gaps = 23/294 (7%) Query: 6 KKKS----EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP----ENL--FLYGVH 55 K+ K++ + L R +K F+ K + + +N +++G H Sbjct: 34 SAKNKNYVNLNKKDKNNTSSSLTRRKPIFKSNTEFSNKKSKSQEEFTSKKNFDDWIWGKH 93 Query: 56 TVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVH 111 +V AL + R I ++ T + + L ++ V + ++ A H Sbjct: 94 SVYEALIS-QRAINRIWCTSEIFSSDKFYILLKELKLKGVLIEEVSWNRLSQLT-YGASH 151 Query: 112 QGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+AL+ A + +L+ + +++ LD + DPHN+GAI+RSA AF C GII Sbjct: 152 QGVALQLACSKTISLEKLIDISKHNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIII 211 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 +R S + +AK A+GALEH+ R+ NL AL+ + GF +GLS D + L Sbjct: 212 PQRRSAGLTGTVAKVAAGALEHLQVSRVVNLNRALEMLKKNGFLIVGLSGDGQLSLSNFS 271 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + +I+G+E KG+ TQ+ + + + G +LN S AAA++L+ Sbjct: 272 EKVPLVVIVGSEDKGISLLTQKKCDFLLSIPLKGKTSSLNASVAAAISLFHLTR 325 >gi|254441653|ref|ZP_05055146.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter antarcticus 307] gi|198251731|gb|EDY76046.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter antarcticus 307] Length = 291 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 97/263 (36%), Positives = 146/263 (55%), Gaps = 13/263 (4%) Query: 28 RDYKKMQSF--NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 RD KK ++++ + E ++L+G+H V AL NP R+ + + TKNA RL Sbjct: 27 RDMKKPTWVVDKERNKRAAANETVWLFGIHAVRDALLNPVREKLRFVVTKNAFDRLGDAV 86 Query: 86 ---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMV 137 + P+ + ++VHQG ALE PL ++ +++ Sbjct: 87 SIGLKDGGPEPEMCEPRNFAAPIDPQSVHQGAALEVKPLDWGKIEDRCMGDGVNPPRVVL 146 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD V DPHN+GAILRSA F +I R++ E+ LAK+ASGA+E PY+R+ NL D Sbjct: 147 LDKVTDPHNVGAILRSAEVFGAQAVIAMNRHAAPETGALAKTASGAMERQPYLRVRNLAD 206 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHL 254 A+ ++ G+ +GL ++++ +EQ + IAL+LGAEG GLR KT+ET ++ + Sbjct: 207 AIVELQGMGYMVLGLDGEAEQTIEQVVDGKTDRAIALVLGAEGPGLRDKTKETCDALVKI 266 Query: 255 HMPGIIKALNVSNAAAVALYITQ 277 G +LNVSNAAAVALY T+ Sbjct: 267 DFAGEFGSLNVSNAAAVALYATR 289 >gi|72162663|ref|YP_290320.1| rRNA methylase [Thermobifida fusca YX] gi|71916395|gb|AAZ56297.1| putative rRNA methylase [Thermobifida fusca YX] Length = 268 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 103/254 (40%), Gaps = 5/254 (1%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY +++ N + ++ G V AL + LL + D Sbjct: 15 ADYVRLRDTNLRRSLEAKHGLFLAEGEKVVRRALRAGYQPRSLLLTRRRRRVLDDVLDTF 74 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 PV V +++VG LA L + V +++ ++VL+ + D N+ Sbjct: 75 QA--PVYVVDDAVAEQLVGFHIHRGILASFHRKPLPTVPEVVASARRIVVLEDIVDHTNV 132 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD--ALQKMHSW 205 GAI RSA D + R + K + GA+ +PY R+++ + + Sbjct: 133 GAIFRSAAGLGVDAAVLAPRCADPLYRRAVKVSMGAVFTLPYARLTDWASGLEDLRRSGF 192 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALN 264 + ++D+ E ++ K AL+ G+EG GL + + A A + M + +LN Sbjct: 193 TLVALTPAADAVPLPEAVHRDGKYALLFGSEGDGLSSRWLDQADVRARIPMAVRDVDSLN 252 Query: 265 VSNAAAVALYITQN 278 V+ AAA+A Y Sbjct: 253 VTAAAAIACYELMR 266 >gi|60680796|ref|YP_210940.1| putative SpoU-like rRNA methylase [Bacteroides fragilis NCTC 9343] gi|265762723|ref|ZP_06091291.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|60492230|emb|CAH06995.1| putative SpoU-like rRNA methylase [Bacteroides fragilis NCTC 9343] gi|263255331|gb|EEZ26677.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301162293|emb|CBW21838.1| putative SpoU-like rRNA methylase [Bacteroides fragilis 638R] Length = 270 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 90/248 (36%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + + ++R S + AL+ + L K+ + Sbjct: 17 FSTLTEAQLRNRIDSDRGIFIAESPKVIQVALDAGYEPLAILCEQKHIIGDAAVIIERCG 76 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + G L P L + R ++ ++V+D V D NIGA Sbjct: 77 DIPVYTGKRDILALLTGYTLTRGVLCAMRRPELRSVEEVCREAKRIVVIDGVVDTTNIGA 136 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T+ + + + G++ + + I L + Sbjct: 137 IFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSIFLVSWTWIDGSLSRLGDLGFRTAAM 196 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 K+A+I+G EG GL +T A + + M + +LNV+ AA Sbjct: 197 ALTDDSISIDDPVLKTEPKLAIIMGTEGDGLPYETISEADYVVRIPMSHSVDSLNVAAAA 256 Query: 270 AVALYITQ 277 +VA + + Sbjct: 257 SVAFWELR 264 >gi|53712583|ref|YP_098575.1| putative rRNA methylase [Bacteroides fragilis YCH46] gi|52215448|dbj|BAD48041.1| putative rRNA methylase [Bacteroides fragilis YCH46] Length = 270 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 90/248 (36%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + + ++R S + AL+ + L K+ + Sbjct: 17 FSTLTEAQLRNRIDSDRGIFIAESPKVIQVALDAGYEPLAILCEQKHIIGDAAVIIERCG 76 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + G L P L + R ++ ++V+D V D NIGA Sbjct: 77 DIPVYTGKRDILALLTGYTLTRGVLCAMRRPELRSVEEVCREAKRIVVIDGVVDTTNIGA 136 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T+ + + + G++ + + I L + Sbjct: 137 IFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSIFLVSWTWIDGSLSRLGDLGFRTAAM 196 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 K+A+I+G EG GL +T A + + M + +LNV+ AA Sbjct: 197 ALTDDSISIDDPVLKTEPKLAIIMGTEGDGLPYETISEADYVVRIPMSHSVDSLNVAAAA 256 Query: 270 AVALYITQ 277 +VA + + Sbjct: 257 SVAFWELR 264 >gi|320334385|ref|YP_004171096.1| tRNA/rRNA methyltransferase SpoU [Deinococcus maricopensis DSM 21211] gi|319755674|gb|ADV67431.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus maricopensis DSM 21211] Length = 266 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 88/255 (34%), Gaps = 5/255 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + + K++ ++ R +Q + G + A + L + L D Sbjct: 12 QNPEVKRLTRLRER-RARTQERAFLIEGARELERA-AQGGVPLRTLYMCEE-LFSPDAHQ 68 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 LP V + L A L + + + LL+VL V P Sbjct: 69 ALPALHAPDRVHLSRAAFEKASVRENPDGLLAVADLPARPAPDLPHDALLLVLVGVEKPG 128 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA+LRSA D ++ AS + DAL + + Sbjct: 129 NVGALLRSADGVGADAVLVVGGVD--LENPNVIRASQGSVFTQTLFTLPEADALPWLRAQ 186 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF+ ++ D + ++A+ LGAE GL +E + M G +LNV Sbjct: 187 GFRVAAITPDGAQNYWDADLTGRVAVCLGAEHAGLPAAWREHPDLKLAIPMRGAADSLNV 246 Query: 266 SNAAAVALYITQNHF 280 S A A+ LY Sbjct: 247 STAGALVLYEALRQR 261 >gi|167751286|ref|ZP_02423413.1| hypothetical protein EUBSIR_02272 [Eubacterium siraeum DSM 15702] gi|167655793|gb|EDR99922.1| hypothetical protein EUBSIR_02272 [Eubacterium siraeum DSM 15702] Length = 254 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 100/243 (41%), Gaps = 12/243 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKI 104 +YG + V+ AL + I + K A VK + + Sbjct: 16 SNEEIIYGKNAVTEALKA-EKPIDTVFVLKGAQGMNQIIALAKKQGIVVKDAGEDKLKAL 74 Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 G + H G+A + + T++ + +++ D + DPHN+GAI+R+A A Sbjct: 75 CGDK--HGGVAAALSAVSYCTVEDILANAESKGKPPFIIICDEIQDPHNLGAIIRTAEAA 132 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I KR S + + + K+++GA I + K + + Sbjct: 133 GADGVIIPKRRSATVNPTVFKTSAGAAA-WIKIARVSNLVDTIKTLKKHGVWVYGAEADG 191 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P+++ + +AL++G+EG GL +E + L M G + +LN S A + +Y Sbjct: 192 TPIDKADLSGALALVIGSEGFGLGKLVKENCDVVLSLPMFGKVNSLNASVCAGILMYEAV 251 Query: 278 NHF 280 + Sbjct: 252 KYR 254 >gi|148284217|ref|YP_001248307.1| tRNA/rRNA methyltransferase [Orientia tsutsugamushi str. Boryong] gi|146739656|emb|CAM79445.1| tRNA/rRNA methyltransferase [Orientia tsutsugamushi str. Boryong] Length = 242 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 6/233 (2%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 ++ +++G H AALNNP R I + T++ L + K V + + +++ Sbjct: 4 KKSYYIFGTHASLAALNNPFRVIRYIYCTESCFLSLSKLIQKHN---YKIVTTKFLHQLL 60 Query: 106 GKEAVHQGLALETAPLLSP---TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 G + VHQG+A+ T PL +D + + +LD + D +N+GAI+RSA AF I Sbjct: 61 GSQIVHQGIAVNTIPLTINGIKNIDLNTPNYKIAILDQLLDHNNLGAIIRSAAAFDISTI 120 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + S E+ +AK A GALE I +++ NL + + + F IGL + L + Sbjct: 121 ILPENNSIEENGTIAKIAVGALEKINLVKVKNLYNTINYLKKHEFWIIGLDLNDSNQLTE 180 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + K A +LG+E KGLR T++ + + M ++LNV+ AA + Y Sbjct: 181 QTFHSKTAFVLGSENKGLRNLTRQQCDFLIKIPMSHKTESLNVAGAATIIFYE 233 >gi|126461683|ref|YP_001042797.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17029] gi|126103347|gb|ABN76025.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sphaeroides ATCC 17029] Length = 261 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 131/238 (55%), Gaps = 8/238 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++SR + E ++L+G+H V AL NP R+ +L+ TKNA RL + V Sbjct: 13 KERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLGEAIA-ESGLEPEIV 71 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILR 152 P+ + + +VHQG ALE PL +L+ LL++LD V DPHN+GA+LR Sbjct: 72 DPRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLR 131 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--- 209 SA F +I R+S E+ LAK+ASGALE PY+R+ NL + ++K+ + G+ Sbjct: 132 SAEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGL 191 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G ++ + + +AL+LGAEG GLR KT+ET + + G +LNVSN Sbjct: 192 EGEAAMTLAEGLEGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGGFGSLNVSN 249 >gi|111017974|ref|YP_700946.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1] gi|110817504|gb|ABG92788.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1] Length = 269 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 6/244 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTV 96 ++ + + G ++V AL+ R + L T++A R + H V Sbjct: 19 RTAERRKVGRFLVEGENSVGEALDT--RPVHDLFYTEDAEQRYARLIDRAHTAGVRTSLV 76 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + + +A+ + ++LL V V +P N G ++R A A Sbjct: 77 TDRAVRALSDTVTPPGLVAVCDLLDVPLAEAIGPGTRLLAVPVAVAEPGNAGTVIRVADA 136 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D I + ++++G+L H+P +R + L + + G Q + ++D Sbjct: 137 VGADAAILAGDSVDPHNGKCVRASAGSLFHLPVVRERDTAAVLDSISAAGIQLLATAADG 196 Query: 217 KKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L+ A + G E GL T A + + G ++LN++ AA++ LY Sbjct: 197 EVDLDDADELLARPTAWLFGNEAHGLDAATSARADHRVRIPIHGRAESLNLATAASICLY 256 Query: 275 ITQN 278 + Sbjct: 257 SSAR 260 >gi|256852091|ref|ZP_05557478.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 27-2-CHN] gi|260661339|ref|ZP_05862252.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 115-3-CHN] gi|282934883|ref|ZP_06340115.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 208-1] gi|297205034|ref|ZP_06922430.1| RNA methyltransferase [Lactobacillus jensenii JV-V16] gi|256615503|gb|EEU20693.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 27-2-CHN] gi|260547794|gb|EEX23771.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 115-3-CHN] gi|281301064|gb|EFA93376.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 208-1] gi|297149612|gb|EFH29909.1| RNA methyltransferase [Lactobacillus jensenii JV-V16] Length = 251 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 117/239 (48%), Gaps = 12/239 (5%) Query: 50 FLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIV 105 F++G H L N + KI ++ V+ VP +DK+V Sbjct: 8 FVFGRHAGIDFLKNESADKINKVFLQNGVQVEFANQVYGLAKKKHLIVQEVPKNKLDKLV 67 Query: 106 GKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +A HQGL L + LD + + L++LD + DPHN+G+ILRSA A Sbjct: 68 -PDANHQGLVLAISSFEYADLDKLVKKIADKENPFLLMLDSIEDPHNLGSILRSADATGV 126 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 DGII KR + ++V+AK+++GA++H+P R++NL +++ G+ G + + + Sbjct: 127 DGIIIPKRRASGLTSVVAKTSTGAIDHVPVCRVNNLVQTTKELKKAGYWFFGTAMEGQDY 186 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K K L++G EGKG+ P + + M G +++LN S A V LY N Sbjct: 187 RYWDAK-GKCVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLYQMLN 244 >gi|38233754|ref|NP_939521.1| putative rRNA methyltransferase [Corynebacterium diphtheriae NCTC 13129] gi|38200015|emb|CAE49684.1| Putative rRNA methyltransferase [Corynebacterium diphtheriae] Length = 272 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 93/255 (36%), Gaps = 7/255 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 +S + + G ++V AA+ + L T+ A R + Sbjct: 14 PRVVNAAKLL-RSAGRKKVDRFLAEGENSVEAAVATGAATD--LFVTEKAAERFEAIVTA 70 Query: 88 PH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V + + + A+ L S N L+ V +P Sbjct: 71 AGHMGVFVHPITDRAAKSLSDTMTTTGIFAVCLPVLWSAREALKGNPSLVCVAVETGEPG 130 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G ++R A A D +I +S ++++G+L HIP +R ++ Q + + Sbjct: 131 NAGTLVRVADAMGADCVIFAGTTVDPQSPKAVRASAGSLFHIPVVREPDMQKVWQILRAR 190 Query: 206 GFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 Q + ++ + L+ A ++G E GL + A + + G ++L Sbjct: 191 NVQMLATAAQGEINLDTAGELLEKPTAWLMGNEAHGLNDEALSAADHSVRIPIRGRAESL 250 Query: 264 NVSNAAAVALYITQN 278 N++ AA++ +Y + Sbjct: 251 NLATAASICMYESSK 265 >gi|325126286|gb|ADY85616.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 249 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 74/245 (30%), Positives = 117/245 (47%), Gaps = 12/245 (4%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTI 101 N F++G H L S KI ++ + AR + ++ VP + Sbjct: 4 TNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKNKL 63 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 DK+ G E HQGL L A D + LL++LD++ DPHN+G+ILRSA Sbjct: 64 DKLTGGE-NHQGLVLAVASFEYADFDQLLDKLDQEEAPLLLMLDNIEDPHNLGSILRSAD 122 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G+I KR + ++V+AK+++GA++H+P R++NL Q + G+ G + + Sbjct: 123 ATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTAME 182 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + N K L++G EGKG+ P + + M G +++LN S A V LY Sbjct: 183 GDDYRKWN-ANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLLYQ 241 Query: 276 TQNHF 280 N Sbjct: 242 AFNSR 246 >gi|104774468|ref|YP_619448.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423549|emb|CAI98467.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 255 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 74/245 (30%), Positives = 117/245 (47%), Gaps = 12/245 (4%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTI 101 N F++G H L S KI ++ + AR + ++ VP + Sbjct: 10 TNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKNKL 69 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 DK+ G E HQGL L A D + LL++LD++ DPHN+G+ILRSA Sbjct: 70 DKLTGGE-NHQGLVLAVASFEYADFDQLLDKLDQEEAPLLLMLDNIEDPHNLGSILRSAD 128 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G+I KR + ++V+AK+++GA++H+P R++NL Q + G+ G + + Sbjct: 129 ATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTAME 188 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + N K L++G EGKG+ P + + M G +++LN S A V LY Sbjct: 189 GDDYRKWN-ANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLLYQ 247 Query: 276 TQNHF 280 N Sbjct: 248 AFNSR 252 >gi|150021393|ref|YP_001306747.1| RNA methyltransferase [Thermosipho melanesiensis BI429] gi|149793914|gb|ABR31362.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho melanesiensis BI429] Length = 238 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 5/232 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT-KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + + L N + + + P + ++K+ E Sbjct: 3 VYGRNVLKEILENNVNVKMIYFSNVSSKSIEKLIELVKEKRLPFTIANNRILEKLS-NEK 61 Query: 110 VHQGLALETAPLLSPTLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQG+ ++ + L++LD + DPHN GAI+R++VA D ++ K Sbjct: 62 KHQGVVIDIGDFEYKDESIIEKMEKPFLVILDQIQDPHNFGAIIRTSVAAGADALVIPKN 121 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + + K + G L I ++N+ ++K+ + G + ++ K + Sbjct: 122 NSVKVTPTVVKVSVGTLFKTNIIEVTNIARFIEKIKTLGIW-VYGAAMDGKEYFKVDLKK 180 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +A++LG EG G+R + + + M +++LNVS +A + LY Sbjct: 181 PVAIVLGNEGNGIRENVKNKCDDLISIPMKNNVESLNVSVSAGILLYEVYRQ 232 >gi|94310392|ref|YP_583602.1| tRNA/rRNA methyltransferase (SpoU) [Cupriavidus metallidurans CH34] gi|93354244|gb|ABF08333.1| 23S rRNA methyltransferase [Cupriavidus metallidurans CH34] Length = 262 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 91/257 (35%), Gaps = 5/257 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ +K++++ + + L G+H A + + +++ ++ Sbjct: 6 SRDNALFKQLKALTGSTHQRRKAGQSVLDGIHLAQAYVAALGQPASCVVSERHYDHAEVR 65 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V + + L L + +++ D + D Sbjct: 66 ALLEKIDSDKLVVLADALFAQISSVVNGVDLMLVIDTPAGHLPATIDTDCIIL--DGLQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G+ILRSA A TK + + S ++ GA H+ + L ++ Sbjct: 124 AGNVGSILRSAAAAGIPHAFLTKGCAFAWSVKTLRAGMGANFHLNIVEHCTLEMLESRLA 183 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + SS + + + ++G EG G+ P+ + + PG +++L Sbjct: 184 VPL---LATSSHADAAVFDTDLRQPVGWVIGNEGGGVSPEWMAHVSRTVGIPQPGGLESL 240 Query: 264 NVSNAAAVALYITQNHF 280 NV+ A AV L+ Sbjct: 241 NVAAATAVCLFEAVRQR 257 >gi|241668957|ref|ZP_04756535.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877489|ref|ZP_05250199.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843510|gb|EET21924.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 247 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 10/243 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP-QTIDKIVG 106 +YG+H V + + K + NA +++ V + + + V Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIESIIAKAESKGLKVTFIDSFKQLPGRVR 63 Query: 107 KEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + L + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAIEINDFKTYSENDIENLIPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWVIGLAGEANDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243 Query: 280 FAK 282 + Sbjct: 244 RTQ 246 >gi|170747977|ref|YP_001754237.1| RNA methyltransferase [Methylobacterium radiotolerans JCM 2831] gi|170654499|gb|ACB23554.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium radiotolerans JCM 2831] Length = 281 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 103/242 (42%), Positives = 146/242 (60%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + R LYG H V AL N R + +LLAT+NA ARL+ + + V P Sbjct: 39 RPREEGGDGPTVLYGWHPVVQALGNAQRGLHRLLATENAAARLEAEFGGAVRITPELVRP 98 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 I +++G +AVHQGL LE PL +P LD + LL+ LD + DPHN+GAI+R+A AF Sbjct: 99 SDIGRLLGPDAVHQGLYLEAEPLPAPGLDDLPADALLLALDQITDPHNVGAIVRTAAAFG 158 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GI+TT R++P + VLAKSASG LEH+P++ + NL +AL ++ GF +GL SD+ + Sbjct: 159 VAGIVTTARHAPGATGVLAKSASGGLEHVPFVTVRNLAEALIELGERGFTRVGLDSDAPE 218 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+ + ++LGAEGKGLR +T+ +A + G I++LNVSNAAA+ LY Sbjct: 219 SLDALTVARPLVIVLGAEGKGLRERTRGCCDVLARIPFSGAIRSLNVSNAAAITLYALGR 278 Query: 279 HF 280 Sbjct: 279 KR 280 >gi|262377008|ref|ZP_06070234.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter lwoffii SH145] gi|262308046|gb|EEY89183.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter lwoffii SH145] Length = 249 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 61/249 (24%), Positives = 112/249 (44%), Gaps = 15/249 (6%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTI 101 +PE YGVH+V + L ++ L + + + P V+ + Sbjct: 3 KPEYF--YGVHSVESLLELEPERVLTLFTLKGRDDQRLKRVLELAEPFGISVQQASRDKL 60 Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 +K+ G+ HQG+ + +L + LL+ LDH+ DPHN+GA +R+A Sbjct: 61 EKLAGQP-FHQGVVAAVRAHPTLNEKDLESLLSANPQALLLALDHITDPHNLGACIRTAA 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A + +I + S + + K A+G + + +I+++NL L ++ + + Sbjct: 120 AMGVEAVIAPRDRSATLTPTARKVAAGGADKVKFIQVTNLARTLGQIKEDFNVRVVGTML 179 Query: 216 SKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 +K L + + + +++GAE GLRP TQ ++ M G +++LNVS A +A Sbjct: 180 DEKALPIQNFDFTGTGVCIVMGAEDTGLRPITQSQCDQTVYIPMAGNLQSLNVSVATGMA 239 Query: 273 LYITQNHFA 281 LY Sbjct: 240 LYEACRQRN 248 >gi|195978751|ref|YP_002123995.1| RNA methyltransferase TrmH family [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225867931|ref|YP_002743879.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. zooepidemicus] gi|195975456|gb|ACG62982.1| RNA methyltransferase TrmH family [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225701207|emb|CAW98137.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. zooepidemicus] Length = 245 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 91/231 (39%), Gaps = 10/231 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + + + G H A + I + + RL V V P+ + + Sbjct: 22 HRKHSYLIEGWHLFEEAQRSGQELIH-IFVLEEMAERLSGFDQ------VVIVSPEILKE 74 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + QG+ E + L++ + + DP N+G I+R+A A + DG+ Sbjct: 75 LTSSP-NPQGIIAEVKFCQQALPTSYAGKYLIL--EDIQDPGNLGTIIRTADAANFDGVF 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +++ + + +S G+ H+P R + S + Sbjct: 132 LSEKSADIYNQKTLRSMQGSHFHLPIWRTDIYQVSQAMQQQKIPVLATTLSQDSIDYKDL 191 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL+LG EG+G+ P+ A + H+ MPG ++LNV+ AA + ++ Sbjct: 192 SARSSLALVLGNEGQGISPEMAALADQLIHISMPGQAESLNVAVAAGILIF 242 >gi|123968445|ref|YP_001009303.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. AS9601] gi|123198555|gb|ABM70196.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. AS9601] Length = 335 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 81/285 (28%), Positives = 143/285 (50%), Gaps = 19/285 (6%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP----ENL--FLYGVHTVSAALN 62 + KDS ++ L+R +K + K+ +Q +N +++G H+V AL Sbjct: 50 ENLNKNEKDSTFSSLKRKKPTFKSNIGLHNKNPDINQEFNNKKNFDDWIWGKHSVYEAL- 108 Query: 63 NPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 + R I ++ T + + L ++ V + ++ A HQG+AL+ Sbjct: 109 SSERAINRIWCTSEIFSSDKFYILLKDLKSKGVLIEEVSWNRLSQLT-YGASHQGIALQL 167 Query: 119 APLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 A + +L+ + +++ LD + DPHN+GAI+RSA AF C GII +R S Sbjct: 168 ACSRTISLEQLIDFSRHNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAG 227 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + +AK A+GALEH+ R+ NL AL+++ GF +GLS D + + ++ + + Sbjct: 228 LTGTVAKVAAGALEHVQVSRVVNLNRALEELKKNGFIVVGLSGDGQLSISNFLEKAPLVV 287 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 I+G+E KG+ TQ+ + + + G +LN S AAA++L+ Sbjct: 288 IVGSEEKGISLLTQKKCDFLLSIPLRGKTSSLNASVAAAISLFHL 332 >gi|309811775|ref|ZP_07705549.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] gi|308434196|gb|EFP58054.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] Length = 268 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 107/272 (39%), Gaps = 13/272 (4%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 +I S D A DY ++ + + ++ + AL R Sbjct: 4 RITSPDDDRVA-------DYFRLTDVALRKKLETERGLYIAESEKVIRRALARGDRP-RS 55 Query: 71 LLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 L + L L PV I+ + G LA P L+ + Sbjct: 56 FLMGQRWLDDLADIVADAEAADVPVYVGEADVIESMTGFHLHRGALASMNRPALALPEEL 115 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R+++ ++VL+ + D N+GAI RSA A D ++ T R + + + G + +P Sbjct: 116 LRDARRVVVLEDIVDHTNVGAIFRSAAALGVDAVLVTPRCADPLYRRSVRVSMGTVFQVP 175 Query: 189 YIRISNLTDALQKMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + RI ++ ++ G+ + +++AL++G EG GL +T Sbjct: 176 WTRIDPWPGSVTRLQEAGWTVAAMALADDSVTLDELAAREPERLALVMGTEGDGLGTRTV 235 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + M G + +LNV+ A+AVA+Y + Sbjct: 236 AACDVTVRIPMAGGVDSLNVAAASAVAMYTLR 267 >gi|329939048|ref|ZP_08288422.1| rRNA methylase [Streptomyces griseoaurantiacus M045] gi|329301933|gb|EGG45826.1| rRNA methylase [Streptomyces griseoaurantiacus M045] Length = 283 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 50/271 (18%), Positives = 92/271 (33%), Gaps = 13/271 (4%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-----KIFQLLATKNA 77 + + +++ + G V A+ + + +L T A Sbjct: 3 ISPRSPRVSAARRLARRN-FRGKERLFLAEGPQAVREAVGHRGADGDGATLVELFTTAEA 61 Query: 78 LARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 R V + I I + + +L+ Sbjct: 62 AERYADIVTAARSAGARVHLAEEEVIADISTTVTPQGLVGVCRFLDTPFEEILAARPRLV 121 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 VL HV DP N G +LR A A D ++ T + +++ G+L H+P + Sbjct: 122 AVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKAVRASVGSLFHLPVAVGVTV 181 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSM 251 A+ + G + + L+ E A + G E GL +T+ A ++ Sbjct: 182 ERAVGGLRDAGVRVLAADGAGADDLDDELDRGTMGTPTAWVFGNEAWGLPEETRALADAV 241 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQN-HFA 281 + + G ++LN++ AAAV LY + A Sbjct: 242 VRVPIHGRAESLNLATAAAVCLYASARAQRA 272 >gi|87302222|ref|ZP_01085047.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Synechococcus sp. WH 5701] gi|87283147|gb|EAQ75103.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Synechococcus sp. WH 5701] Length = 547 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 69/253 (27%), Positives = 122/253 (48%), Gaps = 13/253 (5%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA--RLDWDA--NLPHPFPV 93 R ++P + ++G H AAL R I ++ T R + V Sbjct: 169 SSERFGAEPADDLVWGRHPAQAALE-GDRPIHRIWCTPELRFAPRFLQLLRDAKANGVLV 227 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHN 146 + V + +I G AVHQG+ L+ A + L + + LLM +D + DPHN Sbjct: 228 EEVTWARLGQISG-GAVHQGIVLQAAAAETLDLASLIDGCSTIGEAPLLMAVDGLTDPHN 286 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI+RSA A G++ +R + + +AK A+GALEH+P R+ NL +++++ G Sbjct: 287 LGAIVRSAEALGAHGLVLPQRRNAGLTGSVAKVAAGALEHLPVARVVNLNRSIEQLKDAG 346 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 ++ +GL+ + L + + + ++ G+E +GL T++ + + + G +LN S Sbjct: 347 YRVVGLAEEGNVSLMEADLDGPLVVVTGSEAQGLSMLTRKHCDQLIRIPLRGATPSLNAS 406 Query: 267 NAAAVALYITQNH 279 A A+ LY Sbjct: 407 VATALLLYEIARR 419 >gi|328951303|ref|YP_004368638.1| RNA methyltransferase, TrmH family, group 3 [Marinithermus hydrothermalis DSM 14884] gi|328451627|gb|AEB12528.1| RNA methyltransferase, TrmH family, group 3 [Marinithermus hydrothermalis DSM 14884] Length = 240 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 11/237 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 +YG + V AL ++ ++ + L + VP +D++V + Sbjct: 7 IYGRNPVLEALREG--RVRRVWVARGVERWLVRQLE-ASGVELVFVPRIELDQMV-RTTR 62 Query: 111 HQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ E + + LL+++D V DP N GAILR+A A G++ Sbjct: 63 HQGVVAEVEGVAFADEEAPLRRARERGEPPLLVLVDGVTDPRNFGAILRTAEALGAHGVV 122 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + +R S S V K+++GA IP +R+ NL ++ + G G + ++K L + Sbjct: 123 SEERRSAPLSPVAVKASAGAAHRIPVVRVKNLPRYIEWLKGLGVWVYGTAGQAEKTLAEL 182 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +AL++G+EG+G+R +E + + + G ++LNV+ A +AL+ H Sbjct: 183 DYARPLALVVGSEGEGMRRIVREHCDELVRIELRGETESLNVAVALGIALHWAVQHR 239 >gi|304438770|ref|ZP_07398698.1| RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372772|gb|EFM26350.1| RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 239 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 11/238 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 ++YG + + AL N +K+ ++ A + + + + + +VG+ Sbjct: 3 YIYGRNAIIEALKN--KKVDKIYAAPGLKGSIGKIYAMAKEQKIVIVEADKKKLKDMVGE 60 Query: 108 EAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +AL ++ S D + + L++LD + DP+N GAI RSA AF G Sbjct: 61 VNHQGVVALSSSFEYSQVEDIIAYAKSRGENIKLIMLDEIEDPYNFGAIARSAEAFGFHG 120 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II KR S + + KS++GA+E I ++NL+ + ++ + ++ P+ Sbjct: 121 IIIPKRRSALVNDAVYKSSAGAIESIKVAVVNNLSQTISELKENSIW-VYGATMEGDPIC 179 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + I +++G EGKGL ++ + + M G I +LN S A + LY Sbjct: 180 DQDLVGNICIVIGNEGKGLGHAVEKNCDELISIPMLGSINSLNASVACGIILYEVTRQ 237 >gi|291545156|emb|CBL18265.1| rRNA methylase, putative, group 3 [Ruminococcus sp. 18P13] Length = 249 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 102/245 (41%), Gaps = 9/245 (3%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + + + G + V AL + VK V Q + + Sbjct: 4 QEKDEALIIGRNPVLEALKAEEPLDTIYMNGTGGSLGRICTMAKSRGIVVKNVTEQKLSQ 63 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + A HQG+ A TL+ + L+V D + DPHN+GAI+R+A Sbjct: 64 MA-NGAAHQGVIATGACASYVTLEDLLDISRKKGTAPFLIVCDEIEDPHNLGAIIRTAET 122 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 DG+I KR S S +A + K+++GA +P R++NL A I + S Sbjct: 123 AGADGVIIPKRRSASLNATVHKTSAGAASWLPVARVANL-AAALDTLKEAGVWIYGTDAS 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ +AL++G+EG G+ +E + L M G I +LN S AA + +Y T Sbjct: 182 GDAYDKVDLTGPVALVIGSEGFGMGRLVREKCDFLLRLPMCGRITSLNASVAAGIFMYET 241 Query: 277 QNHFA 281 A Sbjct: 242 LRQRA 246 >gi|78485830|ref|YP_391755.1| RNA methyltransferase TrmH, group 3 [Thiomicrospira crunogena XCL-2] gi|78364116|gb|ABB42081.1| RNA methyltransferase TrmH, group 3 [Thiomicrospira crunogena XCL-2] Length = 244 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 107/239 (44%), Gaps = 12/239 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIVGK 107 LYG+H + L I+ L K + + D + P +K+ Sbjct: 6 LYGIHAIEKFLKQSPHLIYSLTFQKGPVNKRVQSLMDQAKRMGIAYQLEPKSFFNKL--- 62 Query: 108 EAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 E VHQG+ L ++ L + LD V DPHN+GAILR+A A Sbjct: 63 EGVHQGVVATVAKEADLNETDLKALLEAESNPLFLFLDEVQDPHNLGAILRTADATGVTA 122 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ K S +A + K A GA E + + +SNL ++++ G GL+ ++ L Sbjct: 123 VVIPKHNSVGVNATVRKVACGAAETVKVVVVSNLVRTIKELQQAGLWVTGLAGETNTTLY 182 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q + L++GAEG GLR T+ET +A + M G I++LNVS A V LY Sbjct: 183 QLDFKGAVGLVMGAEGSGLRKLTRETCDHLAAIPMAGSIESLNVSVATGVVLYEVYRQR 241 >gi|292670656|ref|ZP_06604082.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292647683|gb|EFF65655.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 294 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 59/290 (20%), Positives = 100/290 (34%), Gaps = 27/290 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN I ++I S ++ + + R ++ G+ A Sbjct: 16 MNQI-----QRITSA----------SNPLIRLTSAVVHVHRRAAKEGLFTAEGLRLAEMA 60 Query: 61 LNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 + KI T+NA A+ PV +P + E+ L L Sbjct: 61 -AVSNWKIRCAFLTENAVAGERAQALLRILAARRAPVALIPETMFSNLSETESQQGILLL 119 Query: 117 ETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 + VR L +VLD V DP N+G ILR+A A G+I + + Sbjct: 120 MERGKNMSLRELVRQRNDVDPPLYIVLDRVQDPGNVGTILRTADAAGASGVILLRGSADV 179 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ-TIGLSSDSKKPLEQEIKNDKIA 230 S + ++ GAL H+P+ + + + + S D + Sbjct: 180 YSGKVVRATMGALFHVPFAEGIAVMELMDFVRSERVTLCAAACDDGACMHYAADLRQPLV 239 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ G E G+ + + ++ M G ++LNVS A A LY Sbjct: 240 IVFGNEANGVSEELLAASEH-IYIPMCGSAESLNVSAAVAAVLYEAMRQR 288 >gi|194476711|ref|YP_002048890.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Paulinella chromatophora] gi|171191718|gb|ACB42680.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Paulinella chromatophora] Length = 526 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 74/306 (24%), Positives = 130/306 (42%), Gaps = 33/306 (10%) Query: 2 NLISKKK--SEKI-----FSLKDSHYAKLRRNHRDY-----------KKMQSFNQKSRHT 43 +I+ + S+KI S K+ H +D S + S Sbjct: 130 EMITSNRIFSKKIGRTIGKSEKNYHVRSFSNKSQDLDTSTYFSFINDSNYDSLEKSS--- 186 Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQ 99 + E ++G H+ AAL + R I ++ T + + L V+ V Sbjct: 187 -ETEKDLIWGRHSTQAALESG-RPIHRIWCTSEVKSSSKFLQLLKKVKASSVLVEEVSWA 244 Query: 100 TIDKIVGKEAVHQGLALETA------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + +++G A L + + LLM ++ + DPHN+GAI+RS Sbjct: 245 RLGQLIGGSGHQGIALQMAAVETLDLTKLIEDCCHLGENPLLMAVEGLTDPHNLGAIVRS 304 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G+I +R + + +AK A+GALEH+P R+ NL +L + G++ +GL+ Sbjct: 305 AEALGAHGLILPQRRNAGLTGSVAKVAAGALEHLPVARVVNLNRSLDILKDKGYRIVGLA 364 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ L + N + ++ G+EG GL T+ + + + G +LN S A+A+ L Sbjct: 365 TEGDVSLTEADLNGPLVIVTGSEGNGLSLLTRRYCDQLIRIPLRGATPSLNASVASALML 424 Query: 274 YITQNH 279 Y Sbjct: 425 YEVARR 430 >gi|311894940|dbj|BAJ27348.1| putative rRNA methyltransferase [Kitasatospora setae KM-6054] Length = 286 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 58/288 (20%), Positives = 108/288 (37%), Gaps = 23/288 (7%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65 ++ + SL+ RR + NQ+ + G V A+ Sbjct: 2 STETPLLTSLRSPRVVAARR-------LAKRNQRGKERR----FLAEGPQAVREAVAFGR 50 Query: 66 RK-----IFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALET 118 + ++ T A R PV T + + I +AL Sbjct: 51 LPDGEHAVVEVYVTAEAAERHADIVAAARAAGRPVLTATEEVVADICDTVTPQGIVALCR 110 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 +L+ VL HV DP N G +LR+A A D ++ T + + Sbjct: 111 FIDTPFEQVLAARPKLVAVLAHVRDPGNAGTVLRTADAAGADAVVLTDASVDPYNPKAVR 170 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILG 234 ++ G+L H+P + +A+ ++ + G + + ++ L+QE A + G Sbjct: 171 ASVGSLFHLPVATGVPVEEAVARLRAAGVRVLAADGAGERDLDQELDQGTLEGPCAWVFG 230 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HFA 281 E GL +T+ A ++ + + G ++LN++ AAAV LY + + Sbjct: 231 NEAWGLPEETRALADAVVRVPIHGHAESLNLATAAAVCLYASARAQRS 278 >gi|298247217|ref|ZP_06971022.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM 44963] gi|297549876|gb|EFH83742.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM 44963] Length = 291 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 103/272 (37%), Gaps = 6/272 (2%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 +K + K+ + ++ +++ +K + + F+ GV ++ AL + + + Sbjct: 1 MKRPNIVKIYSENNQFQYIETLRRKREKRLRHKEFFIEGVRPINQALAHHWTINAFVYSR 60 Query: 75 KNALARLDW-DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 + L+ VP ++K+ K + LAL P + + + Sbjct: 61 EKQLSDWAKGILARSQAQTHFEVPLHLLEKLSNKAESSELLALVAMPEDNLARIPLTQNL 120 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-----HIP 188 L++V D P N+G I+RS A G+I T +++G+ +P Sbjct: 121 LVVVFDRPASPGNLGTIIRSCDALEAHGLILTGHAVDLYDPETISASTGSFFALPTVRLP 180 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R K Q IG +++ + Q LI+G E G+ +E Sbjct: 181 SQRDIEPWLQSAKKKLGALQIIGTDEKAEQEISQHDFTVPTVLIVGNETWGMSAAYKELC 240 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + + G +LNV+ A ++ LY Sbjct: 241 DAVVQIPLVGSASSLNVACATSICLYEVSRQR 272 >gi|254431824|ref|ZP_05045527.1| tRNA/rRNA methyltransferase [Cyanobium sp. PCC 7001] gi|197626277|gb|EDY38836.1| tRNA/rRNA methyltransferase [Cyanobium sp. PCC 7001] Length = 285 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 87/262 (33%), Gaps = 14/262 (5%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R + K+++ + ++ + + L G H + AL L Sbjct: 11 SRRNPLVKRLRQLHT-AKGRREQGLVLLEGTHLLQEALRLGLEPAHLLATGMWQRNHAPT 69 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + TV + + + + A P ++L++ LD V D Sbjct: 70 LGAIRAGVAITTVTEEVLAAVA---TTDHPDGVVAALPTPPAGWGPATARLVLALDGVQD 126 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA----------LEHIPYIRIS 193 P N+G ++R+A+A + + + P + L SA A + + Sbjct: 127 PGNLGTLMRTALAAGVEALWLAEGADPLQPKALRASAGAALALPLQRGSRETLLHQLGEL 186 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 A + P Q L+LG EG GL + + AT Sbjct: 187 AARTAETGSEALQVVATVPPQAGAIPYWQLDWQRPTVLLLGQEGAGLSGQLLQRATHRVT 246 Query: 254 LHMPGIIKALNVSNAAAVALYI 275 + +++LNV+ AAA L Sbjct: 247 IPHSAAVESLNVAVAAAPLLLE 268 >gi|160887319|ref|ZP_02068322.1| hypothetical protein BACOVA_05337 [Bacteroides ovatus ATCC 8483] gi|156107730|gb|EDO09475.1| hypothetical protein BACOVA_05337 [Bacteroides ovatus ATCC 8483] Length = 280 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 57/279 (20%), Positives = 101/279 (36%), Gaps = 13/279 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I I SL DS + + ++R L + A Sbjct: 1 MPIIE------ISSLTDSGVE-------IFSTLTEAQLRNRIEPDKGLLIAESPKVIHVA 47 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 LN + L K+ PV T + + + G L Sbjct: 48 LNAGYEPLALLCEQKHITGDAAGIIERCGDIPVYTGERKLLATLTGYTLTRGVLCAMRRR 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + R ++ ++V++ V D NIGAI RSA A D I+ T+ + + + Sbjct: 108 TLPSVEEVCRKARRIVVIEGVVDATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVS 167 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ IP+ + + L+K K+A+++G EG GL Sbjct: 168 MGSVFLIPWTWLDGSPNELRKQGFRTVAMALTEKSISIDNPILATEPKLAIVMGTEGDGL 227 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +T A + + M + +LNV+ A+A+A + + Sbjct: 228 QNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQ 266 >gi|319408375|emb|CBI82028.1| tRNA/rRNA metyltransferase [Bartonella schoenbuchensis R1] Length = 276 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 131/263 (49%), Positives = 173/263 (65%), Gaps = 7/263 (2%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS-RHTSQ---PENLFLYGVHTVSAALNNP 64 EKI K+S++ RR +RD K + +H S ++LYG+H+V AL NP Sbjct: 2 KEKIS--KNSYFPHPRRQYRDIKSATRVSSTHLKHRSAPLIQGTVYLYGIHSVKEALKNP 59 Query: 65 SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 R L AT NAL RL+ P P+K PP+ +D +VGK+AVHQG+ LET L Sbjct: 60 KRVFNHLYATPNALKRLN-ITESDVPCPLKLYPPKKLDTLVGKDAVHQGVVLETEVLKPR 118 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L + N+ L++V+D + DPHN+GAI+RSAVAF IITT R+SP ES VLAK+ASGAL Sbjct: 119 HLSELTNTNLIIVMDQITDPHNVGAIMRSAVAFKAGAIITTYRHSPQESGVLAKAASGAL 178 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 E I YI + NL +AL+++H GF ++GL S+ + PLE + KIALILGAEGKGLR KT Sbjct: 179 ELIDYITVRNLAEALKEIHQAGFNSLGLDSEGELPLETALTGKKIALILGAEGKGLRKKT 238 Query: 245 QETATSMAHLHMPGIIKALNVSN 267 +ET S+A L++PG IK+LNVSN Sbjct: 239 RETVHSLARLNIPGDIKSLNVSN 261 >gi|93005359|ref|YP_579796.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis K5] gi|92393037|gb|ABE74312.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis K5] Length = 264 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 103/267 (38%), Gaps = 10/267 (3%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + + K +++ ++R ++ + G+H + AAL + + LLA Sbjct: 4 NPTELITSDKNTTVKLVKALLTQARQRNKHGQTVIEGIHLIDAALRSDYPFVQILLAESA 63 Query: 77 ALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134 LP P+ T+ + I + + +P+L + + L Sbjct: 64 HHHPEVQQVLTRLPTYTPILTLSDALYESIRSLGT--GIDIMAVIKMPTPSLSMIHDDCL 121 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ + V D N+G +LR+A A I+ T + + S ++ GA + + Sbjct: 122 IL--NDVQDSGNVGTLLRTAAAVGIKNILCTSATAQAWSPKTLRAGMGAQFALNIYEGLS 179 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + L + + F T + IA I+G EG+G+ + + + L Sbjct: 180 VQEVLDHVQTPLFATSSHTDTVIYQH---DLKKPIAWIMGHEGQGVCNELMQ-CATPIAL 235 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 P ++LNV+ A ++ LY T + Sbjct: 236 PQPNGQESLNVAIAGSLCLYETLRQRS 262 >gi|300022432|ref|YP_003755043.1| RNA methyltransferase, TrmH family, group 3 [Hyphomicrobium denitrificans ATCC 51888] gi|299524253|gb|ADJ22722.1| RNA methyltransferase, TrmH family, group 3 [Hyphomicrobium denitrificans ATCC 51888] Length = 285 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 99/269 (36%), Positives = 152/269 (56%), Gaps = 19/269 (7%) Query: 17 DSHYAKLRRNHRDY------KKMQSFNQKSRHT---------SQPENLFLYGVHTVSAAL 61 H+ K R+ + + + K+ H + L L+G+H V AAL Sbjct: 3 KDHFKKPWRDKNRFSASGGQRYGRPLRAKTPHRGGPASSSGENAEGPLVLFGLHAVEAAL 62 Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 NP R++ +L+ T+NA RL P + V P+ +D+++G + VHQG+ALET PL Sbjct: 63 KNPKRRVHRLMLTENAERRLIEAVG-PITAKIDRVTPRDLDRLLGPDTVHQGVALETEPL 121 Query: 122 LSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 P D + + L+VLD V DPHN+GAILRS+ F G++ T R+SP + VLAK Sbjct: 122 PEPDWDELARAADGRPLIVLDQVTDPHNVGAILRSSAVFGASGLVMTHRHSPPLNGVLAK 181 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 SASGALE IP ++NL A++++ GF +GL +++ +E + AL++G+EGK Sbjct: 182 SASGALELIPVALVANLARAMEELREAGFALVGLDGEAETAIEDLDWSRPTALVMGSEGK 241 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSN 267 GLR T++T ++A + G + +LNVSN Sbjct: 242 GLRELTRKTCDTLARISTDGPVASLNVSN 270 >gi|160945996|ref|ZP_02093222.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii M21/2] gi|158443727|gb|EDP20732.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii M21/2] Length = 260 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 99/260 (38%), Gaps = 8/260 (3%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 R + K + G ++ L T+NAL Sbjct: 3 EKITSRENAKIKYACRLASGAAFRRTEGRFLAEGRKLCPEL--ARGAELETLFYTENALE 60 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 + A LP V DK+ HQG+ TL+ VR + L+ Sbjct: 61 KCPELAALPG--EHYLVEDHVADKLAD-VGTHQGV-FGVFRTPVHTLEEVRPGGRYLALE 116 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N+G +LRSA AF DG+I ++ + + +++ GA IP I + A+ Sbjct: 117 RVQDPGNVGTLLRSAAAFGFDGVILSEGCASVYAPKTLRASMGAAVRIPVIETGAMPQAI 176 Query: 200 QKMHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 + G + + +P + + +++G+EG+GL +T S + M Sbjct: 177 TLLREKGITCLAAALYQSQPLSAAKAGYPGGVCVVIGSEGQGLTDETIAACNSTVRIPMT 236 Query: 258 GIIKALNVSNAAAVALYITQ 277 +++LN A ++ L+ + Sbjct: 237 DRVESLNAGIAGSILLWHFR 256 >gi|254450751|ref|ZP_05064188.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter antarcticus 238] gi|198265157|gb|EDY89427.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter antarcticus 238] Length = 263 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 94/249 (37%), Positives = 146/249 (58%), Gaps = 11/249 (4%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFP-V 93 ++++ + E ++L+G+H V AL NP+R+ + + TKNA RL D L P Sbjct: 10 KERNKRAAANETVWLFGIHAVRDALLNPAREKLRFVVTKNAFDRLGGAVDIGLKDGGPEP 69 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIG 148 + P+ + ++VHQG ALE PL ++ +++LD V DPHN+G Sbjct: 70 EMCEPRNFAAPIDPQSVHQGAALEVKPLDWGKIEDRCMGDGVNPPRVVLLDKVTDPHNVG 129 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AILRSA F +I R++ E+ LAK+ASGA+E PY+R+ NL DA+ ++ + G+ Sbjct: 130 AILRSAEVFGAQAVIAMNRHAAPETGALAKTASGAMERQPYLRVRNLADAIVELQAMGYL 189 Query: 209 TIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +GL ++++ +EQ ++ + AL+LGAEG GLR KT+ET ++ + G +LNV Sbjct: 190 VLGLDGEAEQTIEQVVEGKRDRAIALVLGAEGPGLRDKTKETCDALVRIDFAGEFGSLNV 249 Query: 266 SNAAAVALY 274 SNAAAVALY Sbjct: 250 SNAAAVALY 258 >gi|113954303|ref|YP_730838.1| RNA methyltransferase [Synechococcus sp. CC9311] gi|113881654|gb|ABI46612.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp. CC9311] Length = 589 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 75/268 (27%), Positives = 127/268 (47%), Gaps = 21/268 (7%) Query: 31 KKMQSFNQKSRHTSQPE--------NLFLYGVHTVSAALNNPSRKIFQLLATKNALA--R 80 K++ S + + + L+G H AAL R I ++ T + + Sbjct: 225 KRLSSPRLDDKPRGESSPHAAEAVADDLLWGRHATQAALEAG-RPIHRIWCTSELRSASK 283 Query: 81 LDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----- 133 V+ V + ++ G AVHQG+ L+TA + L+ + Sbjct: 284 FLQLLKDAKSSGVLVEEVTWARLGQLTG-GAVHQGIVLQTAAAETFDLEDLVKGCSALDE 342 Query: 134 --LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL+ LD + DPHN+GAI+RSA A G++ +R S + +AK A+GALEH+P R Sbjct: 343 APLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVAR 402 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + NL +L+ + S G++ IGL+ + LE+ + + ++ G+EG+GL T+ + Sbjct: 403 VVNLNRSLETLKSSGYRVIGLAEEGDLTLEEVDLDGPLVIVTGSEGQGLSMLTRRHCDQL 462 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + + G+ +LN S A A+ LY Sbjct: 463 IRIPLRGVTPSLNASVATALCLYEVARR 490 >gi|94676839|ref|YP_589003.1| RNA methyltransferase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219989|gb|ABF14148.1| RNA methyltransferase, TrmH family, group 3 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 248 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 107/245 (43%), Gaps = 13/245 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YG+H V A L + ++ + + + +K V Q +D Sbjct: 2 NEIIYGIHAVQAILKRDPQLFKEVYLLERRNDQRFQCIIKQLKQKKIIIKIVNRQWLDMQ 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V K A HQG+ + + LL+VLD V DPHN+GA LR A A Sbjct: 62 V-KGATHQGIIARVQTNRRQFQEQDLPALLAQHTAPLLLVLDGVTDPHNLGACLRCADAA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215 + II + S +A + K ASGA E +P I+++N T L + H+ + +D Sbjct: 121 GVNAIIIPRNRSAYLNATVKKVASGAAETMPLIQVTNLARTLRLLQEHNILILGTTIEAD 180 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 S IAL++GAEG G+R T++ + + M G + +LNVS A V L+ Sbjct: 181 SHIYQTSFKFTSPIALVVGAEGNGIRRLTKKYCNELLRIPMVGSVASLNVSVAVGVFLFE 240 Query: 276 TQNHF 280 Sbjct: 241 VVRQR 245 >gi|253582715|ref|ZP_04859936.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725] gi|251835585|gb|EES64125.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725] Length = 235 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 4/233 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 + GV+ V L N + I +L K N +L+ L + + I+ G Sbjct: 4 IIGVNPVIEVLQNKEKNIEKLEMFKGNKDEKLNKIKKLASERNIKIFY-TDKKIENSQGV 62 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 A ++++LD + DP N GA++RSA F GII +R Sbjct: 63 AVYISEYDYYVEFGEFLEKIAPMEKSIVLILDEIQDPRNFGALIRSAEVFGVKGIIIPER 122 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + + + K+++GA+E++ ++++N+++AL K+ + G + K +E Sbjct: 123 NAVRINETVVKTSTGAIEYVDIVKVTNISEALLKLKKLDYWVYGAEGEGSKDYSKEKYPS 182 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + AL+LG+EG G+R K +E + + M G I +LNVS A + L F Sbjct: 183 RTALVLGSEGNGIRKKVKENCDVLIKIPMHGKINSLNVSVAGGIILSEIVKSF 235 >gi|157150531|ref|YP_001449839.1| spoU rRNA methylase family protein [Streptococcus gordonii str. Challis substr. CH1] gi|157075325|gb|ABV10008.1| spoU rRNA Methylase family protein [Streptococcus gordonii str. Challis substr. CH1] Length = 246 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 56/276 (20%), Positives = 102/276 (36%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + K H K R + + + G H A Sbjct: 1 MNIITSKANNVVKKAKKLHQKKYRTD---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L++ + I + A L V + P + + QG+ E Sbjct: 40 LSSGAEVISIFALPEYADH-------LSGCKQVYWLSPDLLRDLAD-SKTPQGIVAEVRL 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L + + V DP N+G I+R+A A DGI ++ + + +S Sbjct: 92 QQEVLPEKLSGKYLFL--EDVQDPGNLGTIIRTADAAGFDGIFISEHSADLYNLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R++ S SD E+ + L++G EG+G+ Sbjct: 150 QGSHFHLPIYRLATADLIDLAKKSDLPIFASTLSDDSIDYEKLKGSQNFILVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SSMIEAAADQLVHIPMKGKAESLNVAVAAGILIFYL 245 >gi|328955415|ref|YP_004372748.1| tRNA/rRNA methyltransferase (SpoU) [Coriobacterium glomerans PW2] gi|328455739|gb|AEB06933.1| tRNA/rRNA methyltransferase (SpoU) [Coriobacterium glomerans PW2] Length = 291 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 12/258 (4%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-- 87 Y ++ +S + + AL I L ++ L L+ L Sbjct: 19 YARLTERELRSVLEPEKGLFIAESAKVIERALEAGMEPI-SFLVAEDRLESLEPILALVD 77 Query: 88 -PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 P P+ + + + G LA P L ++ + + + VLD + D N Sbjct: 78 AAEPIPIFVAAQELLVSLTGFALTRGALAAMRRPPLPDPVEMLAGCRRVCVLDGLVDHTN 137 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI--------RISNLTDA 198 +GA RSA A + D ++ + + + G + +P+ + Sbjct: 138 VGAAFRSAAALNVDAVLVSPTCCDPLYRRAVRVSMGTVFQVPWTRLGADRASWPQDGMAT 197 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L+ D++AL G EG+GL + E + + M G Sbjct: 198 LRAAGFTCAALALADESISLDDPILTAIDRLALFFGTEGRGLSDRVIEACDMIVRIPMAG 257 Query: 259 IIKALNVSNAAAVALYIT 276 + +LNV+ A+AV + Sbjct: 258 GVDSLNVAAASAVVFWQL 275 >gi|157413277|ref|YP_001484143.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9215] gi|157387852|gb|ABV50557.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9215] Length = 326 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 81/290 (27%), Positives = 138/290 (47%), Gaps = 19/290 (6%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP----ENL--FLYGVHTVSA 59 K K++ + L R +K F+ K + +N +++G H+V Sbjct: 38 KNYENLNKKDKNNTSSSLTRRKPIFKSNTEFSNKKSKYQEEFTSKKNFDDWIWGKHSVYE 97 Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLA 115 AL + R I ++ T + + L ++ V + ++ A HQG+A Sbjct: 98 ALIS-QRAINRIWCTSEIFSSDKFYILLKELKLKGVLIEEVSWNRLSQLT-YGASHQGVA 155 Query: 116 LETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 L+ A + +L+ + +++ LD + DPHN+GAI+RSA AF C GII +R Sbjct: 156 LQLACSKTISLEKLIDISKHNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRR 215 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S + +AK A+GALEH+ R+ NL AL+ + GF +GLS D + L + Sbjct: 216 SAGLTGTVAKVAAGALEHLQVSRVVNLNRALEVLKKNGFLIVGLSGDGQLSLSNFSEIVP 275 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +I+G+E KG+ TQ+ + + + G +LN S AAA++L+ Sbjct: 276 LVVIVGSEDKGISLLTQKKCDFLLSIPLKGKTSSLNASVAAAISLFHLTR 325 >gi|256956680|ref|ZP_05560851.1| rRNA methylase [Enterococcus faecalis DS5] gi|300860699|ref|ZP_07106786.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TUSoD Ef11] gi|256947176|gb|EEU63808.1| rRNA methylase [Enterococcus faecalis DS5] gi|300849738|gb|EFK77488.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TUSoD Ef11] gi|315035621|gb|EFT47553.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX0027] Length = 258 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 95/237 (40%), Gaps = 3/237 (1%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + + G H + A+ + + L + W A + V + + Sbjct: 23 YREELNQYIIEGFHLIEEAVKANADVQWILFNQRGQQEWGTWLAEQETE-KLIFVSDEVL 81 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + LA+ T L + + LL+ D++ DP N+G ++R+A A G Sbjct: 82 NSLSELPTSQGILAIVTLETQQEQLLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAG 139 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + + + +S G+ H+P ++ +++ Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYY 199 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ + ALILG EG G+ P+ T ++ M G ++LNV+ AA V ++ +N Sbjct: 200 EQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFEN 256 >gi|169350897|ref|ZP_02867835.1| hypothetical protein CLOSPI_01671 [Clostridium spiroforme DSM 1552] gi|169292483|gb|EDS74616.1| hypothetical protein CLOSPI_01671 [Clostridium spiroforme DSM 1552] Length = 244 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 110/238 (46%), Gaps = 8/238 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG +T+ AL + I+ + + + +K + K +G Sbjct: 7 YIYGKNTILEALK-GEKSIYTVYIQDSIKDNRIIELCKKKKIRIKIIDKSEFIKKLGNVR 65 Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ E ++D LL++LD + DPHN+GAILR+ A DG+I Sbjct: 66 -HQGVMAEVEEYRYYSVDEILASIPSGKMPLLLMLDGLEDPHNLGAILRTCDAIGVDGVI 124 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K S + +AK ++GA++H+ +++NLT L+ + F +G D+ + Q Sbjct: 125 IGKNRSVGLNGTVAKVSTGAIDHVKVAQVTNLTRTLEDLKKHSFWVVGCDLDNAQDYRQI 184 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 N + +++G+EG G+ ++T L M G + +LN S A AV LY N Sbjct: 185 DYNMPLVIVIGSEGFGISRLVKKTCDFNVVLPMMGHVTSLNASVATAVILYQVYNSRN 242 >gi|90962219|ref|YP_536135.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius UCC118] gi|301299870|ref|ZP_07206104.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821413|gb|ABE00052.1| TRNA/rRNA methyltransferase [Lactobacillus salivarius UCC118] gi|300214881|gb|ADJ79297.1| TRNA/rRNA methyltransferase [Lactobacillus salivarius CECT 5713] gi|300852541|gb|EFK80191.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus salivarius ACS-116-V-Col5a] Length = 248 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 116/241 (48%), Gaps = 12/241 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQT 100 + + F+ G H AAL I ++ + A + V VP Sbjct: 2 KEEQKDFIIGRHPAMAALKKKDSNINKVFVQEGLKADAIQEIYTLAKARKLVVSRVPKTK 61 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRS 153 +D +V + HQG+ + A T+D ++LD + DPHN+G+I+R+ Sbjct: 62 LDNLVNGQ-NHQGVVIAIASYSYATIDDLFEKARSKNEDPFFLILDGIEDPHNLGSIMRT 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A GII KR + ++V+AK+++GA+EH+P +R++NL ++++ G G Sbjct: 121 ADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVVRVTNLVQTVKELKEQGVWIFGTD 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + K AL++G EGKG+ P ++T M + M G +++LN S AA++ + Sbjct: 181 MKGTDFRKWSAK-GATALVIGNEGKGISPLLKKTCDEMLTIPMVGHVQSLNASVAASLLI 239 Query: 274 Y 274 Y Sbjct: 240 Y 240 >gi|295103248|emb|CBL00792.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3] Length = 260 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 99/260 (38%), Gaps = 8/260 (3%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 R + K + G ++ L T+NAL Sbjct: 3 EKITSRENAKIKYACRLASGAAFRRTEGRFLAEGRKLCPEL--ARGAELETLFYTENALE 60 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 + A LP V DK+ HQG+ TL+ VR + L+ Sbjct: 61 KCPELAALPG--EHYLVEDHVADKLAD-VGTHQGV-FGVFRTPVHTLEEVRPGGRYLALE 116 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N+G +LRSA AF DG+I ++ + + +++ GA IP I + A+ Sbjct: 117 RVQDPGNVGTLLRSAAAFGFDGVILSEGCASVYAPKTLRASMGAAVRIPVIETGAMPQAI 176 Query: 200 QKMHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 + G + + +P + + +++G+EG+GL +T S + M Sbjct: 177 ALLREKGITCLAAALYQSQPLSAAKAGYPGGVCVVIGSEGQGLTDETIAACNSTVRIPMT 236 Query: 258 GIIKALNVSNAAAVALYITQ 277 +++LN A ++ L+ + Sbjct: 237 DRVESLNAGIAGSILLWHFR 256 >gi|168215515|ref|ZP_02641140.1| RNA methyltransferase, TrmH family [Clostridium perfringens NCTC 8239] gi|182382182|gb|EDT79661.1| RNA methyltransferase, TrmH family [Clostridium perfringens NCTC 8239] Length = 257 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 90/241 (37%), Gaps = 6/241 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 H + + G+ V A+ + + D + + + + Sbjct: 23 HRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTESFKEKNPDLFLKINENIKLIQMNEALL 82 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++ E + + ++ +L++++D V DP N+G I+R+A A G Sbjct: 83 KQLCSTENPQGIVGVINMQNKEL-----KSGELVVLVDKVQDPGNMGTIIRTAHAAGAAG 137 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 I+ TK + +S G++ +IP + +L + K Sbjct: 138 IVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSLDFVKSLKKEGYKLVVSS-LQGKNNFF 196 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +E K+ + +G EG G+ K + A + MPG ++LNV+ A ++ +Y Sbjct: 197 EENLQGKVMIAVGNEGNGVSDKVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQSF 256 Query: 282 K 282 K Sbjct: 257 K 257 >gi|317969745|ref|ZP_07971135.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Synechococcus sp. CB0205] Length = 406 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 114/241 (47%), Gaps = 13/241 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA--RLDWDANLPH--PFPVKTVPPQTIDKIV 105 ++G H AAL + R + ++ T R V+ V + ++ Sbjct: 73 LIWGRHAAQAALESG-RPVHRIWCTPEMRFQPRFLQLLREAKSGGVLVEEVTWSRLGQLT 131 Query: 106 GKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ ++ A + L + LLM LD + DPHN+GAI+RSA A Sbjct: 132 -NGAVHQGIVMQAAAADTLDLGTLIDGCRDLGEPPLLMALDGITDPHNLGAIVRSAEALG 190 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++ +R S + +AK A+GALEH+P R+ NL AL + + G++ IGL+ + Sbjct: 191 AHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRALDSLKNEGYRVIGLAGEGSV 250 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L + + + ++ G+EG GL T++ + + + G +LN S A A+ LY Sbjct: 251 ALSEADLDGPLVVVTGSEGDGLSMLTRKHCDQLVRIPIRGATPSLNASVATAMVLYEVAR 310 Query: 279 H 279 Sbjct: 311 R 311 >gi|116514573|ref|YP_813479.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093888|gb|ABJ59041.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 249 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 73/245 (29%), Positives = 116/245 (47%), Gaps = 12/245 (4%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTI 101 N F++G H L S KI ++ + AR + ++ VP + Sbjct: 4 TNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKNKL 63 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 DK+ G E HQGL L A D + L++LD++ DPHN+G+ILRSA Sbjct: 64 DKLTGGE-NHQGLVLAVASFEYADFDQLLDKLDQEEAPFLLMLDNIEDPHNLGSILRSAD 122 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G+I KR + ++V+AK+++GA++H+P R++NL Q + G+ G + + Sbjct: 123 ATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTAME 182 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + N K L++G EGKG+ P + + M G +++LN S A V LY Sbjct: 183 GDDYRKWN-ANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLLYQ 241 Query: 276 TQNHF 280 N Sbjct: 242 AFNSR 246 >gi|325690945|gb|EGD32945.1| SpoU rRNA methylase [Streptococcus sanguinis SK115] Length = 246 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 107/276 (38%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + K H+ K R++ + + G H A Sbjct: 1 MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +++ + I ++ A RL + + V P+ + + + +A Sbjct: 40 VSSGAELI-RIFALAEYAERLADFSQM------IFVSPEILADLADSKTPQGIVAEVAFE 92 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + L+ V DP N+G I+R+A A DG+ + + + +S Sbjct: 93 REKIPEELSGHY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+ + S S + + + AL++G EG+G+ Sbjct: 150 QGSHFHLPVYRMDTADFIILAQSSGLPILASTLSSASIDYREVGSKESFALVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P+ A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPEMTAAADILVHISMKGQAESLNVAVAAGILIFHL 245 >gi|28211878|ref|NP_782822.1| 23S rRNA methyltransferase [Clostridium tetani E88] gi|28204320|gb|AAO36759.1| 23S rRNA methyltransferase [Clostridium tetani E88] Length = 260 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 52/284 (18%), Positives = 102/284 (35%), Gaps = 26/284 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN I+ K + + ++ K R + + + G V A Sbjct: 1 MNTITSKDNNLVKFVRKLRDKKHR-------------------KKEKKFIVEGFRFVEEA 41 Query: 61 LNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + + L+ K N + + + + V + + + I G E G+ Sbjct: 42 LKSDYCIEYILINEKSLNKVQEFNINIEVIEN-KVYILNESSFNSISGTENSQ-GILAIV 99 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L + L ++ D V DP N+G I+R+A A + GI+ T+ + + Sbjct: 100 NMKEVLKL---KEDGLYILADRVQDPGNMGTIIRTAHAANASGILITEGTVDVYNEKTLR 156 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 S+ G++ +IP I L +K + ++ + L +G EG Sbjct: 157 SSMGSIFYIPVIEDFKLDKIKDLKLKGFKVLASSLDTNKSLYDLDLCKKNLILAVGNEGS 216 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G+ + + + MPG ++LN A ++ ++ K Sbjct: 217 GVSEEVYNISDETFIIPMPGNAESLNAGVATSIIIFEIVRQNLK 260 >gi|293372222|ref|ZP_06618608.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|298482640|ref|ZP_07000824.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22] gi|292632798|gb|EFF51390.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|298271103|gb|EFI12680.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22] Length = 280 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 57/279 (20%), Positives = 101/279 (36%), Gaps = 13/279 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I I SL DS + + ++R L + A Sbjct: 1 MPIIE------ISSLTDSGVE-------IFSTLTEAQLRNRIEPDKGLLIAESPKVIHVA 47 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 LN + L K+ PV T + + + G L Sbjct: 48 LNAGYEPLALLCEQKHITGDAAGIIERCGDIPVYTGERKLLATLTGYTLTRGVLCAMRRR 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + R ++ ++V++ V D NIGAI RSA A D I+ T+ + + + Sbjct: 108 ALPSVEEVCRKARRIVVIEGVVDATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVS 167 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ IP+ + + L+K K+A+++G EG GL Sbjct: 168 MGSVFLIPWTWLDGSPNELRKQGFRTVAMALTEKSISIDNPILATEPKLAIVMGTEGDGL 227 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +T A + + M + +LNV+ A+A+A + + Sbjct: 228 QNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQ 266 >gi|255531174|ref|YP_003091546.1| tRNA/rRNA methyltransferase SpoU [Pedobacter heparinus DSM 2366] gi|255344158|gb|ACU03484.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter heparinus DSM 2366] Length = 249 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 90/254 (35%), Gaps = 10/254 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 ++S +QK ++ + + G+ ++ +++ + + LP Sbjct: 6 QISFIKSLHQK-KYRKENGIFIIEGIKSIEEFIHSNYQVHSIYYLAQYQ----SLLPALP 60 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + V +DKI + LAL P A + +VLD V DP N+G Sbjct: 61 ANIKLFEVNNAELDKISTLQTPQGILALVNIPEPPLFKPATPKNLFSLVLDGVQDPGNMG 120 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R+A F II + + ++ G+L + Sbjct: 121 TIIRTADWFGFKNIICSNNCVEVYNPKTVQATMGSLSRVNIFYEDLPGILTNVKLPVFGA 180 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + S K E +ILG EG+G+ P + T + G ++LNV+ + Sbjct: 181 VLDGKSIYKTDWGNEGL-----VILGNEGQGITPPVMKLITHPVTIPRIGGAESLNVAIS 235 Query: 269 AAVALYITQNHFAK 282 AA+ + K Sbjct: 236 AAILCADISRNLNK 249 >gi|237742621|ref|ZP_04573102.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13] gi|229430269|gb|EEO40481.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13] Length = 234 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 4/226 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL N + I +L K + D + + ID G Sbjct: 4 IIGINPVTEALLNKEKNIEKLEFYNGLKGETVQKLKDLASKRNIKIFY-TGKKIDNSQGV 62 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + A ++ L+++LD + DP N GAI+RSA F D II +R Sbjct: 63 AVYISNYDYYKDFDEAYEELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPER 122 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + + K+++GA+E++ +++NL+D + K+ + G + ++ +E + Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEEDYPN 182 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K+ +LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 183 KVVFVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|312899832|ref|ZP_07759151.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0470] gi|311293082|gb|EFQ71638.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0470] gi|315170301|gb|EFU14318.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX1342] Length = 258 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 95/238 (39%), Gaps = 3/238 (1%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + + G H V A+ + + L + W A + V + + Sbjct: 23 YREELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTWLAEQETE-KLIFVSDEVL 81 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + LA+ T + + LL+ D++ DP N+G ++R+A A G Sbjct: 82 NSLSELPTSQGILAIVTLETQQEQSLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAG 139 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + + + +S G+ H+P ++ +++ Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYY 199 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ + ALILG EG G+ P+ T ++ M G ++LNV+ AA V ++ +N+ Sbjct: 200 EQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|29376897|ref|NP_816051.1| RNA methyltransferase [Enterococcus faecalis V583] gi|227553934|ref|ZP_03983981.1| RNA methyltransferase [Enterococcus faecalis HH22] gi|229545177|ref|ZP_04433902.1| RNA methyltransferase [Enterococcus faecalis TX1322] gi|229549425|ref|ZP_04438150.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|255972129|ref|ZP_05422715.1| predicted protein [Enterococcus faecalis T1] gi|256763096|ref|ZP_05503676.1| rRNA methylase [Enterococcus faecalis T3] gi|256853763|ref|ZP_05559128.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256961303|ref|ZP_05565474.1| rRNA methylase [Enterococcus faecalis Merz96] gi|256963570|ref|ZP_05567741.1| rRNA methylase [Enterococcus faecalis HIP11704] gi|257079635|ref|ZP_05573996.1| rRNA methylase [Enterococcus faecalis JH1] gi|257082019|ref|ZP_05576380.1| rRNA methylase [Enterococcus faecalis E1Sol] gi|257084570|ref|ZP_05578931.1| rRNA methylase [Enterococcus faecalis Fly1] gi|293383588|ref|ZP_06629498.1| RNA methyltransferase, TrmH family [Enterococcus faecalis R712] gi|293387299|ref|ZP_06631856.1| RNA methyltransferase, TrmH family [Enterococcus faecalis S613] gi|294780915|ref|ZP_06746269.1| RNA methyltransferase, TrmH family [Enterococcus faecalis PC1.1] gi|307270842|ref|ZP_07552129.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX4248] gi|307271508|ref|ZP_07552780.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0855] gi|307287718|ref|ZP_07567761.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0109] gi|312906138|ref|ZP_07765150.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis DAPTO 512] gi|312909483|ref|ZP_07768338.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis DAPTO 516] gi|312953482|ref|ZP_07772322.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX0102] gi|29344362|gb|AAO82121.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583] gi|227176920|gb|EEI57892.1| RNA methyltransferase [Enterococcus faecalis HH22] gi|229305662|gb|EEN71658.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|229309722|gb|EEN75709.1| RNA methyltransferase [Enterococcus faecalis TX1322] gi|255963147|gb|EET95623.1| predicted protein [Enterococcus faecalis T1] gi|256684347|gb|EEU24042.1| rRNA methylase [Enterococcus faecalis T3] gi|256710706|gb|EEU25749.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256951799|gb|EEU68431.1| rRNA methylase [Enterococcus faecalis Merz96] gi|256954066|gb|EEU70698.1| rRNA methylase [Enterococcus faecalis HIP11704] gi|256987665|gb|EEU74967.1| rRNA methylase [Enterococcus faecalis JH1] gi|256990049|gb|EEU77351.1| rRNA methylase [Enterococcus faecalis E1Sol] gi|256992600|gb|EEU79902.1| rRNA methylase [Enterococcus faecalis Fly1] gi|291079100|gb|EFE16464.1| RNA methyltransferase, TrmH family [Enterococcus faecalis R712] gi|291083336|gb|EFE20299.1| RNA methyltransferase, TrmH family [Enterococcus faecalis S613] gi|294452041|gb|EFG20489.1| RNA methyltransferase, TrmH family [Enterococcus faecalis PC1.1] gi|306501456|gb|EFM70759.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0109] gi|306511780|gb|EFM80778.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0855] gi|306512755|gb|EFM81400.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX4248] gi|310627784|gb|EFQ11067.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis DAPTO 512] gi|310628691|gb|EFQ11974.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX0102] gi|311290156|gb|EFQ68712.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis DAPTO 516] gi|315030220|gb|EFT42152.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX4000] gi|315144757|gb|EFT88773.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX2141] gi|315152149|gb|EFT96165.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0031] gi|315159088|gb|EFU03105.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0312] gi|315161681|gb|EFU05698.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0645] gi|315164817|gb|EFU08834.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX1302] gi|315574365|gb|EFU86556.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0309B] gi|315580160|gb|EFU92351.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0309A] gi|323481392|gb|ADX80831.1| SpoU type rRNA methylase [Enterococcus faecalis 62] gi|327535688|gb|AEA94522.1| TrmH family RNA methyltransferase [Enterococcus faecalis OG1RF] gi|329572242|gb|EGG53902.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TX1467] Length = 258 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 95/238 (39%), Gaps = 3/238 (1%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + + G H V A+ + + L + W A + V + + Sbjct: 23 YREELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTWLAEQETE-KLIFVSDEVL 81 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + LA+ T + + LL+ D++ DP N+G ++R+A A G Sbjct: 82 NSLSELPTSQGILAIVTLETQQEQSLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAG 139 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + + + +S G+ H+P ++ +++ Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYY 199 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ + ALILG EG G+ P+ T ++ M G ++LNV+ AA V ++ +N+ Sbjct: 200 EQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|88855741|ref|ZP_01130404.1| tRNA/rRNA methyltransferase protein [marine actinobacterium PHSC20C1] gi|88815065|gb|EAR24924.1| tRNA/rRNA methyltransferase protein [marine actinobacterium PHSC20C1] Length = 345 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 66/268 (24%), Positives = 112/268 (41%), Gaps = 13/268 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARL 81 + ++ Q S E+ + G ++V AL L + + Sbjct: 73 DAPQQQRSTRPAQSRVAKSADESEMVTGRNSVLEALRA-KIPAHTLYMATRIEYDDRVKE 131 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-------LDAVRNSQL 134 V V +D++ G ++VHQGLAL+ P ++A L Sbjct: 132 ILKLATSRGIAVLEVMRPELDRLAGFDSVHQGLALKVPPYEYAHPMELLDKVEARGQVPL 191 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L+ LD + DP N+GAI+RS AF G+I +R S +A K+++GA P +N Sbjct: 192 LVALDGITDPRNLGAIVRSVAAFGGQGVIVPQRRSVGMTASAWKTSAGAAARTPVAMANN 251 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAH 253 LT +++ G +GL D L + + +++G+EGKGL E ++ Sbjct: 252 LTQMIKEYKKRGVFVLGLDGDGDVSLPSLPLAKEPVLIVVGSEGKGLSRLVTENCDAIVS 311 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281 + + ++LN AA+V LY + Sbjct: 312 IPISASTESLNAGIAASVTLYEISKLRS 339 >gi|227537933|ref|ZP_03967982.1| TrmH family rRNA methyltransferase [Sphingobacterium spiritivorum ATCC 33300] gi|227242235|gb|EEI92250.1| TrmH family rRNA methyltransferase [Sphingobacterium spiritivorum ATCC 33300] Length = 249 Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 88/246 (35%), Gaps = 9/246 (3%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + + Q + Q + G+ +V+ L++ + L T N ++ +PH Sbjct: 9 LITSLQHKKFRKQHSLFVVEGIKSVTEFLSSAYD-VHALFYTANVTTKV---VKIPHNIK 64 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + KI ++ LAL P +Q +VLD V DP N+G I+R Sbjct: 65 SYELTDNEFSKISQLKSPQGILALVRLPEEKTPEQLDFANQFTLVLDDVQDPGNLGTIIR 124 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A F I+ + + + + ++ G+L + + Sbjct: 125 TAEWFGFKHIVCSAGTVDAYNPKVVQATMGSLSRTQIHYTDLESFIRTVRLPVFGALLDG 184 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 +S + +E +++G EG G+ K + + G ++LNV+ A + Sbjct: 185 TSIYETRWGKEGL-----ILMGNEGNGISEKLLDLIDHAVTIPRTGQAESLNVAVATTIF 239 Query: 273 LYITQN 278 Sbjct: 240 CNEIAR 245 >gi|237743868|ref|ZP_04574349.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1] gi|229432899|gb|EEO43111.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1] Length = 234 Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 107/226 (47%), Gaps = 4/226 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL N + I +L K + D + + ID G Sbjct: 4 IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKIDNSQGV 62 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + A ++ L+++LD + DP N GAI+RSA F D II +R Sbjct: 63 AVYISNYDYYKDFDEAYEELAGKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPER 122 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + + K+++GA+E++ +++NL+D + K+ + G + ++ +E + Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWIYGAAGEANINYNEEDYPN 182 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K+ L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 183 KVILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|318041276|ref|ZP_07973232.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CB0101] Length = 556 Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 71/253 (28%), Positives = 121/253 (47%), Gaps = 13/253 (5%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL----DWDANLPHPFPV 93 + R + P + ++G H AAL + R I ++ T + V Sbjct: 203 ESERFNAGPADDLIWGRHAAQAALESD-RPIHRIWCTPEMRFQPRFMQLLREAKAGGVLV 261 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHN 146 + V + ++ AVHQG+ L+ A + L ++ LLM LD + DPHN Sbjct: 262 EEVTWARLGQLTD-GAVHQGIVLQAAAADTLDLGSLIDGCRSIGEPPLLMALDGITDPHN 320 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI+RSA A G++ +R S + +AK A+GALEH+P R+ NL +L+ + G Sbjct: 321 LGAIVRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLKEEG 380 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 ++ IGL+ ++ L + + + ++ G+EG GL T++ + + + G +LN S Sbjct: 381 YRVIGLAGEAGVALSEADLDGPLVIVTGSEGSGLSMLTRKHCDQLVRIPLRGATPSLNAS 440 Query: 267 NAAAVALYITQNH 279 A A+ LY Sbjct: 441 VATAMVLYEVARR 453 >gi|254420044|ref|ZP_05033768.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3] gi|196186221|gb|EDX81197.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3] Length = 272 Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 90/278 (32%), Gaps = 25/278 (8%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 +I+ ++ I S++ H + G+ + AL+ Sbjct: 12 VITSLTNDTIKSVRALHM-------------------RKERDLTGAFLAEGLKFIGEALD 52 Query: 63 NPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGKEAVHQGLALET 118 LL + A D + V ++KI ++ L + Sbjct: 53 LGRAP-RMLLVGEEARPHPLLDRAKAETRKAGGDIIIVTHAILEKISRRDNPQTVLGVFD 111 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 ++ + L+ V DP N+G I+R+A A C G+I S + Sbjct: 112 QAYAPLDSLDPTSAPCWVALEQVRDPGNLGTIIRTADAAGCGGVILIGDCVDPYSVEAVR 171 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + G++ I ++ L +W +G D+ + +++G E Sbjct: 172 ATMGSVF-AVSITRTDPEAFLAWRKTWPGSVVGTRLDATVSHRSAVMQKPSLILMGNEQA 230 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 GL + + M G +LN++ A + +Y Sbjct: 231 GLTDQLAAACDVNVKIPMRGRADSLNLAIATGIMVYAA 268 >gi|332557678|ref|ZP_08412000.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N] gi|332275390|gb|EGJ20705.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N] Length = 261 Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 90/238 (37%), Positives = 133/238 (55%), Gaps = 8/238 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++SR + E ++L+G+H V AL NP R+ +L+ TKNA RL DA + V Sbjct: 13 KERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLG-DAIAESGLEPEIV 71 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILR 152 P+ + + +VHQG ALE PL +L+ LL++LD V DPHN+GA+LR Sbjct: 72 DPRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLR 131 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--- 209 SA F +I R+S E+ LAK+ASGALE PY+R+ NL + ++K+ + G+ Sbjct: 132 SAEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGL 191 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 G ++ + + +AL+LGAEG GLR KT+ET + + G +LNVSN Sbjct: 192 EGEAAMTLAEGLEGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGEFGSLNVSN 249 >gi|326693241|ref|ZP_08230246.1| rRNA methylase [Leuconostoc argentinum KCTC 3773] Length = 257 Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 102/255 (40%), Gaps = 5/255 (1%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 L + K K + + + L G H V A+ + K ++AT+ +A Sbjct: 2 DRILSNQNSRVKAWAKLATK-KGRLENKTYLLDGWHLVEEAIKAKA-KFHAVMATEAQMA 59 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 D PH P + + I G QG+ E + + + ++LD Sbjct: 60 EHLPDV--PHGVPAFEISEEVAKHIAG-TNTPQGIFAEISLPDKTFDPSYVHDGAWLLLD 116 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N+G ++R+A A G++ + + + S + ++ G+ H+ + Sbjct: 117 KIQDPGNVGTLVRTADAAGFKGVVLGEGTADAYSPKVVRAMQGSQFHLEVLNGDLNEWTD 176 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + ++ + Q + + ALI+G EG+G+ + T+ ++ + G Sbjct: 177 ALTANGLPVYGSQLDEAAQSYRQIEPSTQFALIVGNEGQGMSEELAAKTTANLYIPIQGQ 236 Query: 260 IKALNVSNAAAVALY 274 ++LNV+ A + ++ Sbjct: 237 AESLNVAIAGGILMF 251 >gi|298291417|ref|YP_003693356.1| RNA methyltransferase, TrmH family, group 3 [Starkeya novella DSM 506] gi|296927928|gb|ADH88737.1| RNA methyltransferase, TrmH family, group 3 [Starkeya novella DSM 506] Length = 270 Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 104/251 (41%), Positives = 148/251 (58%), Gaps = 9/251 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENL--------FLYGVHTVSAALNNPSRKIFQLLATKN 76 R R + + ++ R LYG H+V+ AL NP RKI +LLAT+N Sbjct: 4 RPRRPARPYHASQRQPRPRPAGRPFGAWPDDVAILYGWHSVAEALRNPRRKIRRLLATEN 63 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 A RL+ + ++P + V P ID+++ +AVHQGL E PL + +L S LL+ Sbjct: 64 AAKRLEEE-SIPLKVKPEIVRPGEIDRLLDPDAVHQGLLAECDPLPALSLAKAAESDLLL 122 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VLD + DPHN+GAI+RSA A I+TT R+SP+ + VLAKSASG LEH+P+ + NL Sbjct: 123 VLDQITDPHNVGAIVRSAAAMKVGAIVTTARHSPAATGVLAKSASGGLEHVPFCFVGNLA 182 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 L+++ G Q +GL S+ L +AL+LGAEGKGLR T++T ++A + + Sbjct: 183 RTLEELKERGVQVVGLDSEGPADLADTAMRAPVALVLGAEGKGLRQLTRQTCDTLARIDL 242 Query: 257 PGIIKALNVSN 267 PG I +LNVSN Sbjct: 243 PGAIVSLNVSN 253 >gi|257056552|ref|YP_003134384.1| rRNA methylase [Saccharomonospora viridis DSM 43017] gi|256586424|gb|ACU97557.1| rRNA methylase [Saccharomonospora viridis DSM 43017] Length = 257 Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 94/256 (36%), Gaps = 7/256 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + ++S S G V AL ++ +L T+ A R Sbjct: 7 PRVVAARRLTRRS-ERSAAGRFLAEGAQAVREALRYG--RVHELFVTEAAAQRHTELVAD 63 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V + + + + + +A+ + + +L+ VL ++ DP N Sbjct: 64 AP--SVSMINDRAAELLSETVSPQGIVAVCDTVTVDLSAALTGRPRLVAVLVNIADPGNA 121 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G +LR A A D +I + ++++G+L H+P + ++ L + G Sbjct: 122 GTVLRVADAAGADAVIFAGSCVDVHNGKCVRASTGSLFHLPVVAEPDVHRVLDACVAAGL 181 Query: 208 QTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 T+ ++ E + A + G E GL A + + G ++LN++ Sbjct: 182 TTVAAHGYAEADLTTAEQLDGPTAWLFGNEAHGLPEDVLARAEHAVRVPLYGKAESLNLA 241 Query: 267 NAAAVALY-ITQNHFA 281 AAAV LY H + Sbjct: 242 TAAAVCLYTTAVRHRS 257 >gi|119962649|ref|YP_946696.1| TrmH family RNA methyltransferase , group 3 [Arthrobacter aurescens TC1] gi|119949508|gb|ABM08419.1| putative RNA methyltransferase, TrmH family, group 3 [Arthrobacter aurescens TC1] Length = 330 Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 67/296 (22%), Positives = 121/296 (40%), Gaps = 36/296 (12%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPE-----------------NLFLYGVHTVSAALN 62 A+ R H+ YK + ++S + G ++V AL Sbjct: 35 KAEERTYHKAYKN-KQLAERSAAKRGSGTRPGGAGARSGPKGRATEELVTGRNSVVEALR 93 Query: 63 NP---SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 + + + P+ +D++ ++AVHQGL L+ Sbjct: 94 AGIPAKALHVAIRIEMDDRVKESLKLAAERGIPLLETGKVELDRMT-EDAVHQGLVLQIP 152 Query: 120 PLLSPTLD-------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 P + N+ + + LD + DP N+GAI+RS AFS G+I + Sbjct: 153 PYEYEDAYDLAEETLAKWKKGHISNAPIFVALDGITDPRNLGAIIRSVSAFSGHGVIVPE 212 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIK 225 R S +A K+++GA +P R +NL +AL++ + G +GL D L + Sbjct: 213 RRSVGVTASAWKTSAGAAVRVPVARAANLNNALKQFKNMGIYVLGLDGDGDVSLPDLTVA 272 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + +++G+EGKGL +E + + + +++LN S A ++LY A Sbjct: 273 TEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGISLYEVSRQRA 328 >gi|330939882|gb|EGH43109.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. pisi str. 1704B] Length = 240 Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 111/231 (48%), Gaps = 8/231 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ + + R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P LD S LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Q Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLGVVGTAGEAEVELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + +I+GAEGKG+R T+E + L M G + +LNVS A V L Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCL 237 >gi|84496735|ref|ZP_00995589.1| putative rRNA methyltransferase [Janibacter sp. HTCC2649] gi|84383503|gb|EAP99384.1| putative rRNA methyltransferase [Janibacter sp. HTCC2649] Length = 264 Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 99/247 (40%), Gaps = 3/247 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S +++S + + G V A+ + + + T A+ R Sbjct: 9 RVKSVRSLSRRS-ARERTGRFVVDGPQGVREAIRYAAPLVDDIYVTAEAIERHQDLIAAA 67 Query: 89 HPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 + + + E+ LA+ A + +L+++L +V DP N Sbjct: 68 QDADIHLHETDDAVLAAMSDTESPQGVLAVVAAQAHTLEQVLATAPRLVVLLSNVRDPGN 127 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 G ++R A AF D ++ T S + +S G+L H+P + ++ + L + + G Sbjct: 128 AGTVIRGADAFGADAVLVTDGSVDVLSPKVVRSTVGSLFHLPVVTGLDVNETLDALAAHG 187 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 +T L + A ++G E GL + ++ + + + +++LN++ Sbjct: 188 IRTYAADGVGTTLLPDVDVSQPHAWVMGNEAWGLPAEIRDRCNDVVRVPIHERVESLNLA 247 Query: 267 NAAAVAL 273 AA + L Sbjct: 248 MAATICL 254 >gi|167626521|ref|YP_001677021.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596522|gb|ABZ86520.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 248 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP-QTIDKIVG 106 +YG+H V + + K + NA +++ V + + + V Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIESIIAKAESKGLKVTFIDSFKQLPGRVR 63 Query: 107 KEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+A HQ + L + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAIEINDFKTYSENDIENLIPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEANDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243 Query: 280 FA 281 A Sbjct: 244 RA 245 >gi|296328929|ref|ZP_06871437.1| RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153918|gb|EFG94728.1| RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 234 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 107/226 (47%), Gaps = 4/226 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL N + I +L K + D + + I+ G Sbjct: 4 IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKIENSQGV 62 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + ++ L++VLD + DP N GAI+RSA F D II +R Sbjct: 63 AVYISNYDYYKDFDEAYEELTGKDKSLVLVLDEIQDPRNFGAIIRSAEVFKVDLIIIPER 122 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + + K+++GA+E++ +++NL+D + K+ + G + ++ +E ++ Sbjct: 123 NSVRINETVVKTSTGAIEYVDISKVTNLSDTINKLKKLDYWVYGAAGEANISYNEEDYSN 182 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K+ L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 183 KVVLVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|89891665|ref|ZP_01203168.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium BBFL7] gi|89516000|gb|EAS18664.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium BBFL7] Length = 244 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + ++YG+ + A+ + K++ L + L H VP + +DK Sbjct: 2 EKTTYIYGLRAIIEAIESGQNLGKVYLLREAEGVLMGQLKTLVTKHKITNSFVPVEKLDK 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 I HQG +P+ +L+ + + ++ ++LD V D N GAI+R+A Sbjct: 62 ISSH-GNHQGAVASISPVDFASLEDILEQRNVESKEIYLLLDGVTDVRNFGAIIRTAECT 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 II + S + K+++GA+ +IP ++S++ DA+ M ++G TIG + S Sbjct: 121 GVSAIIIGESGSAPINPATIKTSAGAVFNIPICKVSHIKDAVFLMKAYGITTIGATEKST 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K + N IAL++G+E +G+ P T + L M G I +LNVS A LY Sbjct: 181 KLVYDIDLNQSIALVMGSEERGINPSTLKVIDEPIKLPMKGDIASLNVSVACGAILYEIV 240 Query: 278 NH 279 Sbjct: 241 RQ 242 >gi|296136564|ref|YP_003643806.1| tRNA/rRNA methyltransferase (SpoU) [Thiomonas intermedia K12] gi|294340692|emb|CAZ89084.1| putative tRNA/rRNA methyltransferase (SpoU) [Thiomonas sp. 3As] gi|295796686|gb|ADG31476.1| tRNA/rRNA methyltransferase (SpoU) [Thiomonas intermedia K12] Length = 262 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 96/284 (33%), Gaps = 27/284 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ + + K ++S + + + ++L G+H + AA Sbjct: 1 MKRITSAE------------------NPLIKTLRSLSTEPGAVRKLGQVWLEGIHLIEAA 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + L V Q + + Sbjct: 43 LAAGHAAEPLITTDTGLLDPEIAALVERVGTTQTVVLHQALFNWI----TAVENGPPVGM 98 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L++ + ++LD V D N+G +LR+A A C + + + S + +SA Sbjct: 99 LIARPKSSKPRPGSALILDRVQDAGNVGTMLRTAAASGCGAVYLLRGCAGVWSPKVLRSA 158 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GA IP L + + T + + + I G EG+G+ Sbjct: 159 MGAHFVIPVFEDPPWEQVLNIVPRPIYATHMQADTVLYE---LDLKEPVTWIFGNEGQGI 215 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFAK 282 +++ + +++LNV+ +AA+ LY Q+ F+K Sbjct: 216 SDALVAKCSALVRIPQADGVESLNVAASAAICLYEGVRQSQFSK 259 >gi|327400489|ref|YP_004341328.1| TrmH family RNA methylase [Archaeoglobus veneficus SNP6] gi|327315997|gb|AEA46613.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus veneficus SNP6] Length = 227 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 90/230 (39%), Gaps = 5/230 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 +YGV++V AL +K ++ P+ VP + + + Sbjct: 3 VYGVNSVVEALKA--KKANKVYLATGNRRDRLERMARRAGVPIVYVPKEKL-PPDSQGVA 59 Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 + + +R + L+ LD V DP N+GA +R+A F C G++ KR + Sbjct: 60 ADISPIRYHDVDYLIELCLRKNSFLLFLDGVEDPRNLGAAIRTAEFFGCAGVVIPKRRAV 119 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + + K ++GA H+ R + K + + + +E A Sbjct: 120 QVNETVVKVSAGAALHVSIARDNIT--NALKKAKKFGIKVIGAELDGENIENADLTPPAA 177 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L++G E +G+ ++ + + G + +LN+S AA + +Y Sbjct: 178 LVIGGEDRGISQPVRKLCDFLVKIPGRGKVGSLNLSVAAGILMYEFSKSL 227 >gi|332142968|ref|YP_004428706.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|332142987|ref|YP_004428725.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552990|gb|AEA99708.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327553009|gb|AEA99727.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] Length = 246 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 108/243 (44%), Gaps = 8/243 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102 + +LYG+H + + L ++ ++ K RL N V+ + +D Sbjct: 2 AQQEWLYGLHAMQSVLEKEPERVMEVWVLKGRNDDRLTNIVNQARRFGISVQFSQRKALD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAF 157 V E +A + D + L++VLD V DPHN+GA LR+A Sbjct: 62 DKVSGEQHQGVVARAKPARVLDEADLDKILESEAQPLILVLDGVTDPHNLGACLRTADGA 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 ++ K S S + + K A GA E +P I+I+NL L+ + G +G + ++ Sbjct: 122 GVHAVVVPKDKSASLNGTVRKVACGAAEVVPLIQITNLARTLKHLQDKGLWIVGTAGETD 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K L AL++GAEGKG+R T+ET + L M G + +L VS A V LY Sbjct: 182 KTLYDVDLKGSTALVMGAEGKGMRRLTKETCDELVKLPMAGSVTSLYVSVATGVCLYEIV 241 Query: 278 NHF 280 Sbjct: 242 RQR 244 >gi|154247282|ref|YP_001418240.1| RNA methyltransferase [Xanthobacter autotrophicus Py2] gi|154161367|gb|ABS68583.1| RNA methyltransferase, TrmH family, group 3 [Xanthobacter autotrophicus Py2] Length = 288 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 108/229 (47%), Positives = 150/229 (65%), Gaps = 1/229 (0%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 LYG HTV+ A+ NP R+ +L AT+NA+ RL + L P + V P IDK++G +A Sbjct: 56 LLYGWHTVAEAIGNPKRRFRRLRATENAIHRLAEE-GLTPPIAPEIVRPGDIDKLLGADA 114 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 VHQGL E L SP L + + L++VLD + DPHN+GAI+RSA AF+ I+TT R+S Sbjct: 115 VHQGLLAEVDHLPSPRLKDIAKTDLVLVLDQITDPHNVGAIVRSAAAFAVSAIVTTARHS 174 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 P+ + VLAKSASG LEH+P+ ++NL AL ++ G +GL S+ LE + Sbjct: 175 PAATGVLAKSASGGLEHVPFCLVTNLARALTELKENGMLVVGLDSEGPADLEDTPMRAPL 234 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 AL+LGAEGKGLR T+ET +A + +PG IK+LNVSNAAA++L + + Sbjct: 235 ALVLGAEGKGLRQLTRETCDVLARIDLPGAIKSLNVSNAAALSLGMARR 283 >gi|300811853|ref|ZP_07092319.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497172|gb|EFK32228.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 255 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 74/245 (30%), Positives = 117/245 (47%), Gaps = 12/245 (4%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTI 101 N F++G H L S KI ++ + AR + ++ VP + Sbjct: 10 TNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKNKL 69 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 DK+ G E HQGL L A D + L++LD++ DPHN+G+ILRSA Sbjct: 70 DKLTGGE-NHQGLVLAVASFEYADFDQLLDKLGQEEAPFLLMLDNIEDPHNLGSILRSAD 128 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G+I KR + ++V+AK+++GA++H+P R++NL Q + G+ G + + Sbjct: 129 ATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTAME 188 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + N KI L++G EGKG+ P + + M G +++LN S A V LY Sbjct: 189 GDDYRKWN-ANGKIVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLLYQ 247 Query: 276 TQNHF 280 N Sbjct: 248 AFNSR 252 >gi|145224123|ref|YP_001134801.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK] gi|145216609|gb|ABP46013.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK] Length = 252 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 5/236 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + + G + V AAL + ++ AT++A R PV V Sbjct: 9 RHTGRRRAARFLAEGPNLVEAALRRG--LVSEVFATESAADRFGPLLA---GAPVHLVTE 63 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + + +A+ T P + T L+ V +++P N G ++R A A Sbjct: 64 KAAKALSDTVTPVGLVAVCTLPEVDLTEVLAGEPTLVAVPVGISEPGNAGTVIRVADAMG 123 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D ++ + ++++G++ IP I + D + ++ G Q + Sbjct: 124 ADAVVLAGDSVDPYNGKCLRASAGSIFSIPVISHHDAADVVTQLKDAGLQVLATVLGGSV 183 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L++ + A + G E GL + AT+ + M G ++LNV++AAA+ LY Sbjct: 184 SLDEVDLSGPTAWLFGPEAHGLPAEVAALATAGVEIPMTGGAESLNVASAAAICLY 239 >gi|78184877|ref|YP_377312.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902] gi|78169171|gb|ABB26268.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902] Length = 652 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 72/281 (25%), Positives = 126/281 (44%), Gaps = 19/281 (6%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE------NLFLYGVHTVSAALNNPSRKIF 69 + + + +Q+ + E + ++G H AAL + R I Sbjct: 251 RSGDERRQSSPRPRFGDSGPRSQRPNLQPEAEASTPPADDLIWGRHASQAALESG-RPIH 309 Query: 70 QLLATKNAL--ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 ++ T + V+ V + ++ G +VHQG+AL+TA + Sbjct: 310 RIWCTPEMRSAPKFLQLLREAKTSGVLVEEVTWARLAQVTG-GSVHQGIALQTAAADTLD 368 Query: 126 LDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L A+ LL+ LD + DPHN+GA++RSA A G++ +R S + AK Sbjct: 369 LSALIEGCSELGEPPLLLALDGITDPHNLGAVVRSAEAMGAHGLVLPQRRSAGLTGSAAK 428 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 A+GA+EH+P R+ NL +L+K+ G++ IGL+++ L + L+ G+E + Sbjct: 429 VAAGAMEHLPVARVVNLNRSLEKLKDSGYRVIGLAAEGDVTLMDVDLEGPLVLVTGSEDQ 488 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 GL T+ + + + GI +LN S A A+ +Y Sbjct: 489 GLSLLTRRHCDQLVRIPLRGITPSLNASVATALCVYEVARR 529 >gi|319946452|ref|ZP_08020689.1| SpoU rRNA methylase [Streptococcus australis ATCC 700641] gi|319747420|gb|EFV99676.1| SpoU rRNA methylase [Streptococcus australis ATCC 700641] Length = 254 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 62/274 (22%), Positives = 113/274 (41%), Gaps = 31/274 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + I +K H K R + + + G H A Sbjct: 7 MNIITSKSNNGIKKVKKLHQKKYRTD---------------------SYLIEGWHLYEEA 45 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + N I + ++ + ++ D V V P+ + +I ++ G+ E Sbjct: 46 V-NHQAPIEHVFVLEDFVDKIKVD------TKVTIVTPEVLSEITDSKSPQ-GIVAEIKI 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + LL+ + V DP N+G ++R+A A DG++ T + + + +S Sbjct: 98 QPIQHLQLTQGRYLLL--EDVQDPGNVGTMIRTADAAGFDGVLLTDQSADLYNMKTLRSM 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P IR+ S S + +Q K L++G EG+G+ Sbjct: 156 QGSHFHLPVIRLPKEQLLTAIEESQLPIYATTLSQNSVDYKQVEKVPAFVLVMGNEGQGI 215 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K E+A + H+ MPG ++LNV+ AA + ++ Sbjct: 216 SSKMAESADQLVHITMPGQAESLNVAVAAGILIF 249 >gi|224023886|ref|ZP_03642252.1| hypothetical protein BACCOPRO_00603 [Bacteroides coprophilus DSM 18228] gi|224017108|gb|EEF75120.1| hypothetical protein BACCOPRO_00603 [Bacteroides coprophilus DSM 18228] Length = 282 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 92/248 (37%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + + ++R + AL+ + L ++ Sbjct: 17 FSALTEAQLRNRLDPAKGVFIAESPKVIRVALDAGYEPLSLLCERRHLTGDAADILARVG 76 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + ++ G L P + + ++++ ++V+ V D NIGA Sbjct: 77 DIPVYTGERDLLARLTGYTLTRGVLCAMRRPCVREVAEVCKDARRVVVIHGVVDTTNIGA 136 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T + + + G++ +P+ + L+++ Sbjct: 137 IFRSAAALGIDAVLLTPDSCDPLNRRAVRVSMGSVFLVPWTWADRPLECLKELGFKTAAL 196 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + ++AL++G EG GL + A +A + M + +LNV+ A+ Sbjct: 197 ALTDRSVPLDYPLLKQESRLALVMGTEGDGLPQTAIDGADYVARIPMYHGVDSLNVAAAS 256 Query: 270 AVALYITQ 277 AVA + + Sbjct: 257 AVAFWELR 264 >gi|328950244|ref|YP_004367579.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis DSM 14884] gi|328450568|gb|AEB11469.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis DSM 14884] Length = 263 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 45/261 (17%), Positives = 86/261 (32%), Gaps = 5/261 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN--ALARL 81 + K + + RH + + G A+ ++ + R Sbjct: 5 SPQNPRIKALARLKE-RRHREREGRCLVEGPREAQRAVAAGVPVELAVVWPEGLGPEERT 63 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + PV V + + ++ +E + + ++V + Sbjct: 64 LLEGLTARGVPVLEVAEEPMRRVSYRENPGGLVLVARPSFPRLEALDPPPHAPVLVAVNP 123 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 P N+GAILRSA A +S + ++ AL Sbjct: 124 EKPGNLGAILRSADAAG--AGAVVAVGGVDLMNPNVIRSSTGVVFTLPTAAASSEAALDW 181 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + G + + S ++ + +A+ +G E GL P+ E A + M G Sbjct: 182 VRARGRRLVAASPHAETSYWEVDLTGAVAIAVGPEHAGLPPEWLEAADVRVRIPMCGRAD 241 Query: 262 ALNVSNAAAVALYITQNHFAK 282 +LNVS +AA+ LY +K Sbjct: 242 SLNVSVSAALLLYEALRQRSK 262 >gi|239932317|ref|ZP_04689270.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672] Length = 289 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 91/269 (33%), Gaps = 11/269 (4%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI---FQLLATKNALA 79 + + +++ + G V A + + +L T A Sbjct: 12 ISSRSPRVLAARRLAKRN-FRGKERLFLAEGPQAVREAAAHREGPVPTLVELFTTPEAAE 70 Query: 80 RLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137 R V Q I I + + +L+ V Sbjct: 71 RYADIVGGARGAGARVHLASEQVIADISTTVTPQGLVGVCRFLDTPFEQILAARPRLVAV 130 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L HV DP N G +LR A A + ++ T + +++ G+L H+P + Sbjct: 131 LAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLFHLPVAIGVPVEQ 190 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAH 253 A+ + G + + + L+ E A + G E GL +T+ ++ Sbjct: 191 AVAGLRGTGVRVLAADGAGDRDLDDELDKGTMGGPTAWVFGNEAWGLPEETRALTDAVVR 250 Query: 254 LHMPGIIKALNVSNAAAVALYITQN-HFA 281 + + G ++LN++ AAAV LY + A Sbjct: 251 VPIHGKAESLNLATAAAVCLYASARAQRA 279 >gi|197302656|ref|ZP_03167710.1| hypothetical protein RUMLAC_01386 [Ruminococcus lactaris ATCC 29176] gi|197298238|gb|EDY32784.1| hypothetical protein RUMLAC_01386 [Ruminococcus lactaris ATCC 29176] Length = 271 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 8/247 (3%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 ++ + + ALN + L+ K PV T Sbjct: 25 NKDHPEEGMFIAESPKVIERALNAGYTPVAVLVEKKQIEGEAASVLARCDEIPVYTAEFD 84 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + ++ G + L L +N++ + VL++V +P N+GAI RSA A + Sbjct: 85 VLAQLTGFKLTRGMLCAMRRRGLPEVEKVCQNAKKVAVLENVMNPTNVGAIFRSAAALNM 144 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS------ 213 D ++ T S ++ + G + IP+ I + + +G Sbjct: 145 DAVLLTGGCSNPLYRRASRVSMGTVFQIPWTFIGEKQEDWIENGIRRLHGLGFQTAALAL 204 Query: 214 --SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++ + K+A+ILG EG GL +T + M + +LNV+ A+AV Sbjct: 205 SDDSVSIDDKRLREEKKLAIILGTEGDGLAEQTIAECDYTVKIPMTHGVDSLNVAAASAV 264 Query: 272 ALYITQN 278 A + Sbjct: 265 AFWELGR 271 >gi|88608166|ref|YP_506155.1| RNA methyltransferase [Neorickettsia sennetsu str. Miyayama] gi|88600335|gb|ABD45803.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia sennetsu str. Miyayama] Length = 243 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 80/236 (33%), Positives = 127/236 (53%), Gaps = 6/236 (2%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 Q E + ++G H AA+ NP R I + + A + I KI Sbjct: 2 QQEKVVIFGKHAAVAAIKNPERNILSIFIAREKKAVYLPLLERSRLPNISFCENTQIAKI 61 Query: 105 VGKEAVHQGLALET----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 G++A+HQG+A+ T P L L + L+++LD + DP NIG ILRS+ AF D Sbjct: 62 CGRDALHQGIAVVTEKLSQPELRDVLKSTSKRSLVIILDSITDPFNIGNILRSSKAFGVD 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ +R+SPSE++V+AK+ASGALE IP I+NLT+A++ + G+ L ++ L Sbjct: 122 ALVVKERHSPSETSVIAKTASGALESIPVCTIANLTNAVKILQENGYFCYALDGGARSKL 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNVSNAAAVALY 274 + +K+A +LG+EGKG+ + + M ++NVSNAAA+A++ Sbjct: 182 TEIRFPNKVAFVLGSEGKGISHLLKTRCDQTLSIPMYSDKNFDSINVSNAAAIAMF 237 >gi|329851537|ref|ZP_08266294.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] gi|328840383|gb|EGF89955.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] Length = 297 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 80/287 (27%), Positives = 138/287 (48%), Gaps = 15/287 (5%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHT-----SQPENLFLYGVHTVSA 59 + S++ R + + ++ + + ++ +L+GVH V A Sbjct: 6 ERNDSKRPKGKNRPEKNAGRPHAPEQQRPRQAENAPKPQSFQKSKVNDDGWLWGVHAVEA 65 Query: 60 ALNNPSRK-IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 AL N +R+ +L ++ + V T+ I +++ + AVHQG+AL Sbjct: 66 ALKNVNRQGPLKLYLSEERTKTIAPALLNRSGLRVSTLMMPDIARMLPQGAVHQGIALHG 125 Query: 119 APLLSPTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 L L+ ++++LD V DP NIGAI RSA AF G++ R+SP VL Sbjct: 126 PVLEGVGLESIMEGGDGVILMLDQVTDPQNIGAIFRSAAAFGVQGLVMQDRHSPPLQGVL 185 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQT-------IGLSSDSKKPLEQEIKNDKI 229 AK+A+GA + +P+ R++NL+ +L+ + G+ + I K+ Sbjct: 186 AKTAAGAADRVPFARVTNLSRSLELLGENGYVSVGLAGEGEFNLHTLLAQQGWGISLKKL 245 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L+LG+EG+GLR E +A + MPG ++LNVS+AA+++LY Sbjct: 246 VLVLGSEGEGLRRLVAEHCDHLARIPMPGGFESLNVSHAASISLYEA 292 >gi|315658555|ref|ZP_07911427.1| TrmH family RNA methyltransferase [Staphylococcus lugdunensis M23590] gi|315496884|gb|EFU85207.1| TrmH family RNA methyltransferase [Staphylococcus lugdunensis M23590] Length = 246 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 97/277 (35%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ KI + +K R + + G+H + A Sbjct: 1 MEQITSAQNSKIKNANKL-------------------KKKRERDKTGQALIEGIHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + D + + + + G QG Sbjct: 42 YQSNLTIKQLFIIEPERTEQALIDYAEET----FQINMKVAETLSGTI-TPQGFFAVIEK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 A + ++++D + DP N+G ++R+A A D I+ K + + + +++ Sbjct: 97 PNYDVTHAKQ----VLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTADAYQDKVLRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ HIP + Q + + K QE AL+LG EG G+ Sbjct: 153 QGSVFHIPVVTADLQGFIKQFEGPVFGTALENAVSYKNLDPQETF----ALLLGNEGDGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 E T + + G ++LNV+ A ++ LY + Sbjct: 209 NNALLEHTTKNLIIPIYGKAESLNVAIAGSILLYHLK 245 >gi|326331232|ref|ZP_08197526.1| putative 23S rRNA methyltransferase [Nocardioidaceae bacterium Broad-1] gi|325951002|gb|EGD43048.1| putative 23S rRNA methyltransferase [Nocardioidaceae bacterium Broad-1] Length = 262 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 51/265 (19%), Positives = 99/265 (37%), Gaps = 14/265 (5%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL----NNPSRKIFQLLATKNAL 78 L + K+++ ++S ++ G V AL ++ + + ++ AT+ Sbjct: 5 LSSGNSRLKEIRKLGRRS-VRAERGLFLADGPKAVEGALGTVLDSGASCVQEIFATEAGA 63 Query: 79 ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A L PV V + + + G+ L P D L+++ Sbjct: 64 ---ETYAALLADSPVTLVDDRAMAGLSD-SVTPAGVVALCRFLDVPLADIAGP--LVVIC 117 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 V DP N G ++R A A G+I + +++ G+ H+P + A Sbjct: 118 ADVRDPGNAGTVIRCADAAGASGVILAGDSVDLYNPKTIRASVGSAFHLPVAVERDPVAA 177 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 ++ + G + L A ++G E GL P+ A + + + Sbjct: 178 VKAAKAAGLTVLAADMHGTADLFSADDLLARPTAWLMGNEAWGLPPELAAEADEIVSIPI 237 Query: 257 PGIIKALNVSNAAAVALYITQN-HF 280 G ++LN+S AAA+ LY + Sbjct: 238 FGKAESLNLSTAAALCLYASARAQR 262 >gi|229819278|ref|YP_002880804.1| RNA methyltransferase, TrmH family, group 3 [Beutenbergia cavernae DSM 12333] gi|229565191|gb|ACQ79042.1| RNA methyltransferase, TrmH family, group 3 [Beutenbergia cavernae DSM 12333] Length = 324 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 68/256 (26%), Positives = 113/256 (44%), Gaps = 12/256 (4%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQL-LATKNALARLDWDANLPHPFPV 93 +S Q + G ++V AL P+ ++ + R P+ Sbjct: 70 QGRSGTQRQRGTEVIGGRNSVLEALRARIPATTLYVASRVDADDRIREILRIGTGRALPL 129 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHN 146 +D++ AVHQG+ L P + L++ LD + DP N Sbjct: 130 IETTKTELDRLAD-GAVHQGVVLAVPPYDYAEPAELLEAAERSGTPALVIALDSITDPRN 188 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GA+LRSA AF G++ R S +A K+++GA +P R +NL ALQ+ + G Sbjct: 189 LGAVLRSAGAFGAHGVLVPARRSAGVTAAAWKTSAGAAARVPVARATNLVRALQEYQAAG 248 Query: 207 FQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +GL D + + + L++G+EGKGL +ET +A + + +++LN Sbjct: 249 CFVVGLDGDGPGMVGDLPVADGPVVLVVGSEGKGLSRLVRETCDVVAAIPIASSVESLNA 308 Query: 266 SNAAAVALYITQNHFA 281 S AA++ALY A Sbjct: 309 SVAASIALYEVARRRA 324 >gi|315444459|ref|YP_004077338.1| rRNA methylase [Mycobacterium sp. Spyr1] gi|315262762|gb|ADT99503.1| rRNA methylase [Mycobacterium sp. Spyr1] Length = 249 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 96/246 (39%), Gaps = 7/246 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + + G + V AAL + ++ AT++A R PV V Sbjct: 9 RHTGRRRAARFLAEGPNLVEAALRRG--LVSEVFATESAADRFGPLLA---GAPVHLVTE 63 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + + +A+ T P + L+ V +++P N G ++R A A Sbjct: 64 KAAKALSDTVTPVGLVAVCTLPEVDLAEVLTGEPTLVAVPVGISEPGNAGTVIRVADAMG 123 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D ++ + ++++G++ IP I + + ++ G Q + Sbjct: 124 ADAVVLAGDSVDPYNGKCLRASAGSIFSIPVISHHDAVGVVTQLKGSGLQVLATVLGGSV 183 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--IT 276 PL++ + A + G E GL AT+ + M G ++LNV++AAA+ LY Sbjct: 184 PLDEVDLSGPTAWLFGPEAHGLPADVVALATAGVEIPMAGGAESLNVASAAAICLYQSAA 243 Query: 277 QNHFAK 282 + A+ Sbjct: 244 AHRRAR 249 >gi|116490953|ref|YP_810497.1| rRNA methylase [Oenococcus oeni PSU-1] gi|290890427|ref|ZP_06553502.1| hypothetical protein AWRIB429_0892 [Oenococcus oeni AWRIB429] gi|116091678|gb|ABJ56832.1| rRNA methylase [Oenococcus oeni PSU-1] gi|290479823|gb|EFD88472.1| hypothetical protein AWRIB429_0892 [Oenococcus oeni AWRIB429] Length = 255 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 54/278 (19%), Positives = 118/278 (42%), Gaps = 24/278 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ ++ ++ + + L G H V A Sbjct: 1 MEIITSNQNSRVKIWTSLQTL-------------------KGREKSGTYMLDGWHLVQEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L N + I ++AT+ + + D P P V + + + + K QG+ +T+ Sbjct: 42 L-NQAAPIQAVIATEEQMDQHLIDV--PQGVPAFQVS-EEVARHIAKTNTPQGIFAQTSL 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + ++ ++LD + DP N+G ++R+A A G+ +K + + + ++ Sbjct: 98 PNNSFDPKYVHNGSWLLLDRIQDPGNVGTLIRTADAAGFSGVALSKESADPFNPKVVRAM 157 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+ ++ +L D + K+ + + G + S++ + + ALILG EG+G Sbjct: 158 QGSQFHLKLVKEVDLNDWVDKLEANDYNVYGSTLSENSVDYKTVVPEKNFALILGNEGQG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + P+ Q + H++ G ++LNV+ A + ++ Sbjct: 218 IDPEIQAKTSENLHINFLGKAESLNVAVAGGILMFALN 255 >gi|126696248|ref|YP_001091134.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9301] gi|126543291|gb|ABO17533.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9301] Length = 334 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 77/288 (26%), Positives = 139/288 (48%), Gaps = 19/288 (6%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP----ENL--FLYGVHTVSA 59 KK + + + ++ +R + +K F+ K+ Q N +++G H+V Sbjct: 46 KKVENLSKNKESNTFSSFKRRNTKFKSNTEFSNKNSDIHQEFTNKRNFDDWIWGKHSVYE 105 Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLA 115 L + R I ++ T + + L ++ V + ++ A HQG+A Sbjct: 106 TL-SSDRAINRIWCTSEIFSSDKFYILLKDLKSKGVLIEEVSWNRLSQLT-CGASHQGVA 163 Query: 116 LETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 L+ A + L+ + +++ D + DPHN+GAI+RSA AF C G+I +R Sbjct: 164 LQLACSKTIPLEQLIYFSKHNCPNPIIVAFDGITDPHNVGAIIRSAEAFDCKGVIIPQRR 223 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S + +AK A+GALEH+ R+ NL AL+++ GF +GLS D + + + Sbjct: 224 SAGLTGTVAKVAAGALEHLHVSRVVNLNRALEELKKNGFLVVGLSGDGQISISNFQEKAP 283 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +++G+E KG+ TQ+ + + + G +LN S AAA++LY Sbjct: 284 LVVVVGSEDKGISLLTQKKCDYILSIPLKGKTSSLNASVAAAISLYHL 331 >gi|167750209|ref|ZP_02422336.1| hypothetical protein EUBSIR_01183 [Eubacterium siraeum DSM 15702] gi|167656771|gb|EDS00901.1| hypothetical protein EUBSIR_01183 [Eubacterium siraeum DSM 15702] Length = 303 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 89/256 (34%), Gaps = 8/256 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y + + + + + AL+ + I L K R + Sbjct: 45 YTHLTDARLRKVYEYEHGIFIAESQTVIEVALDAGCKPISMLTDRKYINDRANGIIERCG 104 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + + G E L P + RN++ + VL+++ D N GA Sbjct: 105 DIPVYTADSKIMSGLTGYELTRGMLCAMERPAPKRAEELCRNARRIAVLENIADVSNTGA 164 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ- 208 I+RSA A D ++ T + + G + IP+ I Q Sbjct: 165 IIRSAAALGIDAVLITPSCCDPLCRRAIRVSMGTVFLIPWGYIGEDEHWWQSHGPAYLNS 224 Query: 209 -------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + ++A+ILG+EG GL KT + + M + Sbjct: 225 LGFKTAAMALTDNSVSIDDKTLQSEKRLAIILGSEGYGLSQKTIDGCDYTVKIPMYHGVD 284 Query: 262 ALNVSNAAAVALYITQ 277 +LNV AAAVA + Sbjct: 285 SLNVGAAAAVAFRELR 300 >gi|262282150|ref|ZP_06059919.1| spoU rRNA methylase [Streptococcus sp. 2_1_36FAA] gi|262262604|gb|EEY81301.1| spoU rRNA methylase [Streptococcus sp. 2_1_36FAA] Length = 246 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 55/277 (19%), Positives = 104/277 (37%), Gaps = 33/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + K H K R + + + G H A Sbjct: 1 MNIITSKANNVVKKAKKLHQKKYRTD---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETA 119 L++ + I ++ L A+ V + P + + QG+ E Sbjct: 40 LSSGAEVI--------SIFALPEYADRLSGCEQVNWLSPDLLRDLAD-SKTPQGIVAEVR 90 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + + L + + V DP N+G I+R+A A DGI ++ + + +S Sbjct: 91 LQQEVLPEKLSGKYLFL--EDVQDPGNLGTIIRTADAAGFDGIFISEHSADLYNLKTLRS 148 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P R++ S SD ++ + L++G EG+G Sbjct: 149 MQGSHFHLPIYRLATANLIDLAKKSDLPILASTLSDDSIDYQKLKGSKNFILVMGNEGQG 208 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + A + H+ M G ++LNV+ AA + ++ Sbjct: 209 ISSMIEAAADQLVHIPMKGKAESLNVAVAAGILIFYL 245 >gi|257057351|ref|YP_003135183.1| rRNA methylase [Saccharomonospora viridis DSM 43017] gi|256587223|gb|ACU98356.1| rRNA methylase [Saccharomonospora viridis DSM 43017] Length = 267 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 61/253 (24%), Positives = 104/253 (41%), Gaps = 5/253 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + + +++ + G V L++P + LL +A L D Sbjct: 17 DFRDLTTADRRPDRPGGRGLVIAEGTVVVRRLLDSPY-PVRALLGVPKRIAELADDLATV 75 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P Q + +VG LA+ + V N+++L VL+ VND N+G Sbjct: 76 -NAPAYVTSAQIMSDVVGFHLNRGVLAVADRAPKPTFDEVVANARVLAVLEGVNDHENLG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A+ R+A AF DG++ + + + G + +P+ AL ++ +GF Sbjct: 135 AMFRNAAAFGVDGVLLGASCADPLYRRSVRVSMGHVLRVPFTTAERWPCALDELRRYGFH 194 Query: 209 T---IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 S E ++IAL+ G+EG GL + A S + M + +LNV Sbjct: 195 LAALTPRSEAVTLRNVHEAGYERIALLFGSEGHGLSQAALDAADSWVRIPMASGVDSLNV 254 Query: 266 SNAAAVALYITQN 278 + AAAVA Y Sbjct: 255 ATAAAVAFYELTR 267 >gi|260556538|ref|ZP_05828756.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 19606] gi|260409797|gb|EEX03097.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 19606] Length = 258 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 95/257 (36%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + + K ++ + + + + L G H A L +K+F L T+ AL D Sbjct: 8 SKVNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDL 66 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + + + K + + + L++ ++V D Sbjct: 67 KKIIELHQGHVFIISEVLYKDLSTLGNTLPCLAIIDLPKTASTIDYSVDTLIL--ENVQD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LRSA A + II T+ + S + ++ GA + LTD L K Sbjct: 125 PGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKFD 184 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F T S S + + ILG EG+G + A + PG ++L Sbjct: 185 IPVFVTSSHRSTSLYSKD---LSKPCVWILGNEGQGASDYALDHA-QSVTIPQPGGQESL 240 Query: 264 NVSNAAAVALYITQNHF 280 NV+ A ++ + Sbjct: 241 NVAIAGSICFFEMVRQR 257 >gi|294507468|ref|YP_003571526.1| tRNA/rRNA methyltransferase [Salinibacter ruber M8] gi|294343796|emb|CBH24574.1| tRNA/rRNA methyltransferase [Salinibacter ruber M8] Length = 316 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 106/244 (43%), Gaps = 16/244 (6%) Query: 53 GVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 G V AL I +++ ++ A PV+ VP + A Sbjct: 74 GRGPVLEALKRDDLGIEKVMLKQDVSGAQIGAIRSIADDRGTPVQYVPEARLRHESD-GA 132 Query: 110 VHQGLALETAPLLSPTLDAV------------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+ TAP+ +DA+ +L+V+D V DP N GA+LRSAVA Sbjct: 133 THQGVVAITAPIRYREVDAMLSDIAPTWDAVQTAQPMLLVVDRVTDPRNFGAMLRSAVAA 192 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I R +A K+++G IP R +L L ++ G+ G ++ Sbjct: 193 GTDGVIVPTREMAPLNAAAIKASAGTAPRIPIARTDDLPRVLTQLKERGYFVYGAEGTAE 252 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 PL + +A++LG+EG+GL P+ E + + M G ++LNVS A + ++ Sbjct: 253 TPLWDADWDRPVAVVLGSEGQGLAPEVAEACDELLSIPMRGPAESLNVSVATGLLVFEAA 312 Query: 278 NHFA 281 Sbjct: 313 RSRT 316 >gi|256846015|ref|ZP_05551473.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2] gi|256719574|gb|EEU33129.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2] Length = 234 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 109/226 (48%), Gaps = 4/226 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL N + I +L K + + D + + ID G Sbjct: 4 IIGINPVTEALLNKEKNIEKLELYNGLKGEIVQKLKDLASKRNIKIFY-TGKKIDNSQGV 62 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + A ++ L+++LD + DP N GAI+RSA F D II +R Sbjct: 63 AVYISNYDYYKDFDEAYEELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPER 122 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + + K+++GA+E++ +++NL+D + K+ + G + ++ +E ++ Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEENYSN 182 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K+ L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 183 KVILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|83816243|ref|YP_445585.1| RNA methyltransferase [Salinibacter ruber DSM 13855] gi|83757637|gb|ABC45750.1| RNA methyltransferase, TrmH family, group 3 [Salinibacter ruber DSM 13855] Length = 253 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 106/244 (43%), Gaps = 16/244 (6%) Query: 53 GVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 G V AL I +++ ++ A PV+ VP + A Sbjct: 11 GRGPVLEALKRDDLGIEKVMLKQDVSGAQIGAIRSIADDRGTPVQYVPEARLRHESD-GA 69 Query: 110 VHQGLALETAPLLSPTLDAV------------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 HQG+ TAP+ +DA+ +L+V+D V DP N GA+LRSAVA Sbjct: 70 THQGVVAITAPIRYREVDAMLSDIAPTWDAVQTAQPMLLVVDRVTDPRNFGAMLRSAVAA 129 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I R +A K+++G IP R +L L ++ G+ G ++ Sbjct: 130 GTDGVIVPTREMAPLNAAAIKASAGTAPRIPIARTDDLPRVLTQLKERGYFVYGAEGTAE 189 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 PL + +A++LG+EG+GL P+ E + + M G ++LNVS A + ++ Sbjct: 190 TPLWDADWDRPVAVVLGSEGQGLAPEVAEACDELLSIPMRGPAESLNVSVATGLLVFEAA 249 Query: 278 NHFA 281 Sbjct: 250 RSRT 253 >gi|118497130|ref|YP_898180.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. novicida U112] gi|194323428|ref|ZP_03057205.1| RNA methyltransferase, TrmH family, group 3 [Francisella tularensis subsp. novicida FTE] gi|118423036|gb|ABK89426.1| tRNA/rRNA methyltransferase [Francisella novicida U112] gi|194322283|gb|EDX19764.1| RNA methyltransferase, TrmH family, group 3 [Francisella tularensis subsp. novicida FTE] Length = 248 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99 +YG+H V + + K + NA +++ + V + + Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNASHKIEGIISKAESKGLKVTYIDSFKQLPGRVR 63 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AV + L + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243 Query: 280 FA 281 Sbjct: 244 RT 245 >gi|85713280|ref|ZP_01044303.1| RRNA methylase, SpoU family protein [Idiomarina baltica OS145] gi|85692898|gb|EAQ30873.1| RRNA methylase, SpoU family protein [Idiomarina baltica OS145] Length = 248 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 118/245 (48%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTID 102 + + ++G+H V + L ++ +L ++ + + +P Q +D Sbjct: 2 SQKVTVFGLHAVRSVLTQHPDRLIELFVSRERQDASVAEVIGQAEAIGIRPQWIPRQALD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 K + HQG+ L ++ + + L +VLD+V DPHN+GA +R+A Sbjct: 62 KRA-EFGNHQGVVATIKALPPLNENDFSTLIEKAQGAPLFLVLDNVTDPHNLGACMRTAD 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S + + K A GA+++IP + ++NL AL+ + +G + + Sbjct: 121 AAGATAVVVPKDKSAQITPTVRKVACGAVDNIPLVVVTNLARALRTLQDLNVWVVGTAGE 180 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + K L Q +AL++GAEGKG+R T+ET +A + + G + +LNVS A+ V L+ Sbjct: 181 ADKSLYQIDFKGPLALVMGAEGKGMRRLTRETCDELASIPLDGSVSSLNVSVASGVCLFE 240 Query: 276 TQNHF 280 Sbjct: 241 AVRQR 245 >gi|326803177|ref|YP_004320995.1| RNA methyltransferase, TrmH family [Aerococcus urinae ACS-120-V-Col10a] gi|326651120|gb|AEA01303.1| RNA methyltransferase, TrmH family [Aerococcus urinae ACS-120-V-Col10a] Length = 259 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 93/255 (36%), Gaps = 14/255 (5%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +N+ K + + R + + G H + AAL + L + D+ Sbjct: 4 SKNNPKIKSAKKLLSR-RGREKAGQYLIEGPHLLEAALEAGADLAEVFLTPE---HEADF 59 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + QG+ +L + LL+ D V D Sbjct: 60 KLANQTLISPEIASE------LSDTQRDQGVFAVVNRDQKASLKPASPAVLLL--DGVQD 111 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++RSA AF+ I K S + +S G+ H+ ++ Sbjct: 112 PGNLGTLIRSADAFNYQDIYLGKGTVDPYSPKVVRSMQGSQFHVRLHQVVLEEAMASLRK 171 Query: 204 SWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + +D + LE K +ILG EG G+RP+ + ++ M G + Sbjct: 172 AGYCLAATELNDQAQALETYNLKKRQKWGIILGNEGNGVRPEIIAASDISLYITMLGQAE 231 Query: 262 ALNVSNAAAVALYIT 276 +LNV+ A ++A++ Sbjct: 232 SLNVAIAGSIAMHHF 246 >gi|299148911|ref|ZP_07041973.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23] gi|295087094|emb|CBK68617.1| rRNA methylases [Bacteroides xylanisolvens XB1A] gi|298513672|gb|EFI37559.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23] Length = 280 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 57/279 (20%), Positives = 102/279 (36%), Gaps = 13/279 (4%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I I SL DS + + ++R L + A Sbjct: 1 MPIIE------ISSLTDSGVE-------IFSTLTEAQLRNRIEPDKGLLIAESPKVIHVA 47 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 LN + L K+ PV T + + + G L Sbjct: 48 LNAGYEPLALLCEQKHITGDAAGIIERCGDIPVYTGERKLLATLTGYTLTRGVLCAMRRR 107 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + R ++ ++V++ V D NIGAI RSA A D I+ T+ + + + Sbjct: 108 ALPSVEEVCRKARRIVVIEGVVDATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVS 167 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ IP+ + + L+K+ K+A+++G EG GL Sbjct: 168 MGSVFLIPWTWLDGSPNELRKLGFRTVAMALTEKSISIDNPILATEPKLAIVMGTEGDGL 227 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +T A + + M + +LNV+ A+A+A + + Sbjct: 228 QNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQ 266 >gi|291556141|emb|CBL33258.1| rRNA methylases [Eubacterium siraeum V10Sc8a] Length = 303 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 90/256 (35%), Gaps = 8/256 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y + + + + + AL+ + I L K R + Sbjct: 45 YTHLTDARLRKVYEYEHGIFIAESQTVIEVALDAGCKPISMLTDRKYINDRANGIIERCG 104 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + + G E L P + RN++ + VL+++ D N GA Sbjct: 105 DIPVYTADSKIMSGLTGYELTRGMLCAMERPAPKRAEELCRNARRIAVLENIADVSNTGA 164 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ- 208 I+RSA A D ++ T + + G + IP+ I Q Sbjct: 165 IIRSAAALGIDAVLITPSCCDPLCRRAIRVSMGTVFLIPWGYIGEDEHWWQSHGPAYLNS 224 Query: 209 -------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + +++A+ILG+EG GL KT + + M + Sbjct: 225 LGFKTAAMALTDNSVSIDDKTLQSEERLAIILGSEGYGLSQKTIDGCDYTVKIPMYHGVD 284 Query: 262 ALNVSNAAAVALYITQ 277 +LNV AAAVA + Sbjct: 285 SLNVGAAAAVAFRELR 300 >gi|254796645|ref|YP_003081481.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia risticii str. Illinois] gi|254589882|gb|ACT69244.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia risticii str. Illinois] Length = 243 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 80/236 (33%), Positives = 125/236 (52%), Gaps = 6/236 (2%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 Q E + ++G H AA+ NP R I + + A + I KI Sbjct: 2 QQEKIVIFGKHAAVAAIKNPERNILSIFIAREKKAVYLPLLERSRLPNISFCENTQIAKI 61 Query: 105 VGKEAVHQGLALET----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 G++A+HQG+A+ T P L L L+M+LD + DP N+G ILRS+ AF D Sbjct: 62 CGRDALHQGIAVITEKLSQPELRDVLKNTNKRSLVMILDSITDPFNVGNILRSSKAFGVD 121 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 I+ +R+SPSE++V+AK+ASGALE IP I+NLT+A++ + G+ + + L Sbjct: 122 AIVVKQRHSPSETSVIAKTASGALESIPVCTIANLTNAIKILQENGYFCYAMDGGASSKL 181 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNVSNAAAVALY 274 + +K+A +LG+EGKG+ + + M ++NVSNAAA+A++ Sbjct: 182 TEIRFPNKVAFVLGSEGKGISHLLKTRCDQTLSIPMYADKNFDSINVSNAAAIAMF 237 >gi|225871153|ref|YP_002747100.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. equi 4047] gi|225700557|emb|CAW95049.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. equi 4047] Length = 245 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 90/231 (38%), Gaps = 10/231 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + + + G H A + I + + RL V V P+ + + Sbjct: 22 HRKHSYLIEGWHLFEEAQRSGQELIH-IFVLEEMAERLSGFDQ------VVIVSPEILKE 74 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + QG+ E + L++ + + DP N+G I+R+A A DG+ Sbjct: 75 LTSSP-NPQGIIAEVKLCQQALPTSYAGKYLIL--EDIQDPGNLGTIIRTADAAKFDGVF 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +++ + + +S G+ H+P R + S + Sbjct: 132 LSEKSADVYNQKTLRSMQGSHFHLPIWRTDIYQVSQVMQQQKIPVLATTLSQDSIDYKDL 191 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL+LG EG+G+ P+ A + H+ MPG ++LNV+ AA + ++ Sbjct: 192 SARSSLALVLGNEGQGISPEMAALADQLIHISMPGQAESLNVAVAAGILIF 242 >gi|322411169|gb|EFY02077.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 245 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 10/231 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + ++ + G H A + + + + R+ V V + + Sbjct: 22 HRQQSYLIEGWHLFEEAQQSG-QGFRHIFVLEELAERVADQE------KVVLVSADVLKE 74 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + + +A P L+ D ++L+ V DP N+G I+R+A A DG+ Sbjct: 75 LTDSPSPQGIIAEVDMPQLAFPTDYQGKY---LILEDVQDPGNLGTIIRTADAAGFDGVF 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +++ + ++ +S G+ H+ R + S + Sbjct: 132 LSEKSADVYNSKTLRSMQGSHFHLSIWRTDIYKICREMQEHNTPVLATTLSKVSVDYKTV 191 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + AL++G EG+G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 192 PHQESFALVMGNEGQGISAEMTALADQLVHITMPGQAESLNVAVAAGILIF 242 >gi|312984341|ref|ZP_07791683.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05] gi|310894266|gb|EFQ43346.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05] Length = 255 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 78/236 (33%), Gaps = 3/236 (1%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + G H AL + + L + V + Sbjct: 23 YRDDEGLYLIEGFHLFEEALKAGKKYQYILGTEEALDQADSEYEVNLSGKNVVLINKAIA 82 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + + + LL D++ DP N+G I+R+A A DG Sbjct: 83 RHLSSTKNSQEIFMVLKIDQPKEFPFNYGKWVLL---DNLADPGNVGTIIRTADAAGFDG 139 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ + + + ++ G+ HI I+ + L S K L Sbjct: 140 VVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLADVITDFQDATIPVYASLLDRSAKQLP 199 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K ++ALI+G E G+ A ++ + G ++LN + AA + +Y Sbjct: 200 DFEKVPQLALIIGNEAHGISKTIASLADEKLYIPIKGQAESLNAAVAAGIMIYHFA 255 >gi|120437187|ref|YP_862873.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117579337|emb|CAL67806.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 245 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 115/246 (46%), Gaps = 12/246 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTID 102 E ++G+ TV A+++ + I ++ K+ L + N + + VP + ++ Sbjct: 2 EETTRIFGIRTVIEAIDS-KKDIEKVFIQKDLSGPLFKELNRNLKEGNYNISYVPVEKLN 60 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 K+ K HQG+ +P+ +L+ + L ++LD + D N GAI+R+A Sbjct: 61 KLS-KNGNHQGVVANISPIGFVSLEKLVEDSQKSSTTPLFVLLDGITDVRNFGAIIRTAE 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 GII ++ S +A K+++GA+ +IP +++++ DA+ + ++ + I + Sbjct: 120 CCGVTGIIIQEKGSAPINADTVKTSAGAVFNIPICKVNHIKDAVFHLQTYDIKLIAATEK 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + IA+I+G E KG+ ++ A L M G I +LNVS A LY Sbjct: 180 TDDVIFDIDLKQPIAIIMGDEAKGISNSILKSVDYKAKLPMLGSIASLNVSVACGAFLYE 239 Query: 276 TQNHFA 281 Sbjct: 240 AVRQRI 245 >gi|78779235|ref|YP_397347.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9312] gi|78712734|gb|ABB49911.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9312] Length = 336 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 85/297 (28%), Positives = 149/297 (50%), Gaps = 24/297 (8%) Query: 4 ISKKKSEKIFSLKDSHYAK-----LRRNHRDYKKMQSFNQKSRHT------SQPENLFLY 52 I K++ + +L +S+ K L+++ K + S+ + + +++ Sbjct: 41 IHSSKNQGVNNLDESYKKKDNFSYLKKSKPINKSNIKVSSNSQDIYQDLANKKNFDDWIW 100 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKE 108 G H+V AL N R I ++ T + + L ++ V + ++ Sbjct: 101 GKHSVFEALIN-QRAINRIWCTSEIFSSEKFYILLKELKSKGVLIEEVSWNRLSQLT-FG 158 Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+AL+ A + +L+ ++ +++ LD + DPHN+GAI+RSA AF C G Sbjct: 159 ASHQGVALQLACSKTISLEKLIDFSKRNTSNPIILALDGITDPHNVGAIIRSAEAFDCKG 218 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II +R S + +AK A+GALEH+P R+ NL AL+++ GF IGLS D + + Sbjct: 219 IIIPQRRSAGLTGTVAKVAAGALEHLPVSRVVNLNRALEELKKNGFMVIGLSGDGQLSIS 278 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + + +I+GAE KG+ TQ+ + + + G +LN S AAA++L+ N Sbjct: 279 KFHEKTPLVVIVGAEDKGISLLTQKKCDFLLKIPLKGKTSSLNASVAAAISLFHLTN 335 >gi|291458961|ref|ZP_06598351.1| RNA methyltransferase, TrmH family [Oribacterium sp. oral taxon 078 str. F0262] gi|291418215|gb|EFE91934.1| RNA methyltransferase, TrmH family [Oribacterium sp. oral taxon 078 str. F0262] Length = 248 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 52/253 (20%), Positives = 98/253 (38%), Gaps = 9/253 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 ++++ QK R + G P + ++ + + L P Sbjct: 2 IREVRELLQKPRARQKAGLFVSEGERLCREI---PKDLVERVFLSDSYRGSLPAGF-RPK 57 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 + VP + + I + G+ + L L ++L+ + DP N+G Sbjct: 58 DHTLIRVPDELMAHISDTKHSQ-GILVLVRMLPERVLSGD----FFLLLESLQDPGNLGT 112 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I R A A +GI + + S L +S G+L +P+ + +L + + ++ G + Sbjct: 113 IFRLAEAAGVNGIYMSSDCADIYSPKLVRSTMGSLYRLPFRIVPDLKETIAELKKKGVRC 172 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +K A ++G EG+GL P+ E A + M G +++LN + AA Sbjct: 173 FASHLLGEKAHYDCDFRSPTAFLIGNEGRGLSPELSEAADIRLRIPMKGGVESLNAAAAA 232 Query: 270 AVALYITQNHFAK 282 A+ Y T K Sbjct: 233 AILSYETLRQREK 245 >gi|114771679|ref|ZP_01449083.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium HTCC2255] gi|114547751|gb|EAU50641.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium HTCC2255] Length = 264 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 136/249 (54%), Gaps = 9/249 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++ + + ++L+G+H V AL NP R+ +L+ TKNA +L + + + Sbjct: 15 KERQKSAGSADTVWLFGLHAVRDALENPLRERIRLMVTKNASDKLSSSI-ITSGIDAEII 73 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAIL 151 P+ + + ++VHQG ALE PL + L++LD V DPHN+GAIL Sbjct: 74 DPRKFNPPIDPQSVHQGAALEVMPLDWGNMSTVCAPRNDKKARLVILDRVTDPHNVGAIL 133 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F +I T R S E+ LAK+ASGALE PY+R+ NL +++ + G+ +G Sbjct: 134 RSAEVFGARAVIATARNSAPETGALAKTASGALERQPYLRVRNLATSIKSLQEMGYYVVG 193 Query: 212 LSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 L +K ++ +N +A++LGAEG GLR T++T + + +LNVSNA Sbjct: 194 LDGTAKNSIDDIAELHQNSPLAIVLGAEGPGLRELTKQTCDELVKIDYAATFGSLNVSNA 253 Query: 269 AAVALYITQ 277 AVALY T+ Sbjct: 254 TAVALYATK 262 >gi|262047374|ref|ZP_06020331.1| rRNA methylase [Lactobacillus crispatus MV-3A-US] gi|260572348|gb|EEX28911.1| rRNA methylase [Lactobacillus crispatus MV-3A-US] Length = 255 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 78/236 (33%), Gaps = 3/236 (1%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + G H AL + + L + V + Sbjct: 23 YRDDEGLYLIEGFHLFEEALKAGKKYQYILGTEEALDQADSEYEVDLSGKNVVLINKAIA 82 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + + + LL D++ DP N+G I+R+A A DG Sbjct: 83 RHLSSTKNSQEIFMVLKIDQPKEFPFNYGKWVLL---DNLADPGNVGTIIRTADAAGFDG 139 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ + + + ++ G+ HI I+ + L S K L Sbjct: 140 VVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLANVITDFQDAAIPVYASLLDRSAKQLP 199 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K ++ALI+G E G+ A ++ + G ++LN + AA + +Y Sbjct: 200 DFEKVPQLALIIGNEAHGISKTIASLADEKLYIPIKGQAESLNAAVAAGIMIYHFA 255 >gi|320451443|ref|YP_004203539.1| RNA methyltransferase, TrmH family, group 3 [Thermus scotoductus SA-01] gi|320151612|gb|ADW22990.1| RNA methyltransferase, TrmH family, group 3 [Thermus scotoductus SA-01] Length = 238 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 112/235 (47%), Gaps = 11/235 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG + V AL ++ ++L + A L + VP +D ++ + Sbjct: 2 WIYGRNPVLEALKEG--RVRRVLVARGVEAWLLRELEKL-GAEYTLVPRIELDTLL-RST 57 Query: 110 VHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQGLA E L+ + LL+ LD + DP N GA++RSA+A G+ Sbjct: 58 HHQGLAAEVEEPRYAPLEEAFLLAEARKELPLLVFLDGITDPRNYGAMIRSALALGAHGV 117 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 ++ +R S S + K+++GA +P +++ NL AL+++ G GL K + Sbjct: 118 VSEERRSAPLSPLALKASAGAALKLPVVKVKNLPRALEEVKQKGLWVYGLDVRGAKTPRE 177 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+LG+EG+G+R +E+ + + M ++LN S A +ALY Sbjct: 178 LDFQRPLALVLGSEGEGMRRLVRESCDELFRIPMREEAESLNASVALGIALYAVA 232 >gi|208778923|ref|ZP_03246269.1| RNA methyltransferase, TrmH family, group 3 [Francisella novicida FTG] gi|208744723|gb|EDZ91021.1| RNA methyltransferase, TrmH family, group 3 [Francisella novicida FTG] Length = 248 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99 +YG+H V + + K + NA +++ + V + + Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEDIISKAESKGLKVTFIDSFKQLPGRVR 63 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AV + L + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETLRQ 243 Query: 280 FA 281 Sbjct: 244 RI 245 >gi|288957405|ref|YP_003447746.1| RNA methyltransferase [Azospirillum sp. B510] gi|288909713|dbj|BAI71202.1| RNA methyltransferase [Azospirillum sp. B510] Length = 311 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 98/274 (35%), Positives = 144/274 (52%), Gaps = 12/274 (4%) Query: 19 HYAKLRRNHRD-YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 H A R++ D + + K + LYG+H V+AA NP R+I +LL T + Sbjct: 37 HGAASRQDQTDDAGRGRRGATKGGRAPAARGVLLYGLHPVAAAWTNPERRIHRLLVTDSG 96 Query: 78 LARLDWDANLPHPFPVKT-----VPPQTIDKIVGKEAVHQGLALETAPLLS------PTL 126 A L+ ++ +D+++ AVHQG+ ++ +PL Sbjct: 97 RAALEPVIAEARARGLQRPEASPADRVELDRMLPPGAVHQGIVIDASPLPELGIEDLCNE 156 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 A S +++ LD V DPHN+GAILRSA AF ++ T+R++P + VLAKSASGALE Sbjct: 157 LASEPSAVIVALDQVTDPHNVGAILRSAAAFGARAVVVTERHAPETTGVLAKSASGALEA 216 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +P +R++NL AL + GF ++GL+ L + K L++GAEG GLR T E Sbjct: 217 VPLVRVTNLARALTDLQQNGFWSVGLAESGPSTLAKLDLTGKTVLVMGAEGSGLRRLTME 276 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++A L G + +LNVSNAAAVALY Sbjct: 277 RCDAIARLPTGGPVGSLNVSNAAAVALYEVARLR 310 >gi|170016763|ref|YP_001727682.1| rRNA methylase [Leuconostoc citreum KM20] gi|169803620|gb|ACA82238.1| rRNA methylase [Leuconostoc citreum KM20] Length = 257 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 52/274 (18%), Positives = 107/274 (39%), Gaps = 23/274 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M+ I ++ ++ + K R+ +R Y L G H V A Sbjct: 1 MDRILSNQNSRVKAWAKLATKKGRQENRTY-------------------LLDGWHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + K ++AT+ +A D PH P V + I G QG+ E + Sbjct: 42 IKAKA-KFHAVMATEAQMAEHLNDV--PHGVPAFEVSEEVAKHIAG-TNTPQGIFAEISL 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + LD++ DP N+G ++R+A A G++ + + S + ++ Sbjct: 98 PDKTFDPTYVHDGAWLFLDNIQDPGNVGTLVRTADAAGFRGVVLGTGTADAYSPKVVRAM 157 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+ + + +++ K + + ALI+G EG+G+ Sbjct: 158 QGSQFHLEILNGDLHEWTDALTANGLPVYGSQLNEAAKSYRTIQPSTQFALIVGNEGQGM 217 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + T+ ++ + G ++LNV+ A + ++ Sbjct: 218 AESLADKTTANLYIPIQGQAESLNVAIAGGILMF 251 >gi|329942536|ref|ZP_08291346.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Chlamydophila psittaci Cal10] gi|332287168|ref|YP_004422069.1| putative rRNA methylase [Chlamydophila psittaci 6BC] gi|313847764|emb|CBY16754.1| 4.2.3 [Chlamydophila psittaci RD1] gi|325506488|gb|ADZ18126.1| putative rRNA methylase [Chlamydophila psittaci 6BC] gi|328815446|gb|EGF85434.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Chlamydophila psittaci Cal10] gi|328914413|gb|AEB55246.1| spoU rRNA methylase family protein [Chlamydophila psittaci 6BC] Length = 265 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 80/261 (30%), Gaps = 9/261 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 +N+ K+ + + L G + AL++ ++ + Sbjct: 6 KNNPKVKEAVALKHNRS--RKGPVFLLEGFREIQKALDSGYE-CERIFCGTRVSEKEQSF 62 Query: 85 ANLPHPFPVKTV-----PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 N P++ V + + + ++++ Sbjct: 63 LNAIQKLPIEKVYCLEETLSKLSYKEHHDNFIAVMKKRWWSREEFLAQKRNPLPFYLIIE 122 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V P N+GAILR A DG+I + + +S+ G + +P + Sbjct: 123 QVEKPGNVGAILRIADGVGADGVILCDPVVDVYNPNVIRSSLGTVFTLPIWSATLDQVLQ 182 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + + +K E N + L+ G+E GL + S L M G Sbjct: 183 VILEEKWQAFVTS-PRAKTMYFCENYNQPLVLVFGSEKDGLTASWLKGNFSKISLPMLGQ 241 Query: 260 IKALNVSNAAAVALYITQNHF 280 +LN+S A + Y Sbjct: 242 ADSLNLSTAVSAVAYEVIRQR 262 >gi|239916924|ref|YP_002956482.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665] gi|281414620|ref|ZP_06246362.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665] gi|239838131|gb|ACS29928.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665] Length = 329 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 71/294 (24%), Positives = 122/294 (41%), Gaps = 21/294 (7%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ +H AK K+ S + R + + + G + V AL Sbjct: 37 TPKAEDRVYH--KAHRAKQLAERSAAKR-GSVTDQVRGRVKLTDETVSGRNPVLEALRAG 93 Query: 65 ---SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 + + + L PV +D++ G EAVHQG+ L+ P Sbjct: 94 IPAKALHVAVRIEMDDRVKEALRLCLEQGVPVLENTKPELDRLSG-EAVHQGIVLQIPPY 152 Query: 122 LS-------------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 +R LL+ LD + DP N+GAI+R+ AF DG+I +R Sbjct: 153 EYADATALALDALAKHEKGHLRTPPLLIALDGITDPRNLGAIIRAGSAFDADGVIVPERR 212 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-ND 227 S +A ++++GA +P + NL L +H G+ +GL L + Sbjct: 213 SVGVTATAWRTSAGAAARVPVAQAGNLNTTLVDLHKAGYFVLGLDGGGDVCLPGLALATE 272 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + L++GAEGKGL +E + + + +++LN S A ++LY A Sbjct: 273 PLVLVVGAEGKGLSRMVREHCQQIVSIPIDSTMESLNASMAVGISLYEISVQRA 326 >gi|184201514|ref|YP_001855721.1| rRNA methyltransferase [Kocuria rhizophila DC2201] gi|183581744|dbj|BAG30215.1| rRNA methyltransferase [Kocuria rhizophila DC2201] Length = 322 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 64/264 (24%), Positives = 108/264 (40%), Gaps = 22/264 (8%) Query: 38 QKSRHTSQPE-----NLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLP 88 + R + + G ++V AL L + + Sbjct: 59 NQPRRPQRSGTGPIKEDLVTGRNSVLEALR-GGVPAKTLFVASKIEVDDRVKDILQLCAE 117 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----------AVRNSQLLMVL 138 P +D++ +A+HQG+ L+ P P D + LL+ Sbjct: 118 RQVPTLEASRGELDRLSS-DAIHQGVVLQVPPYEYPDADELAASVMHAADREHPPLLVAA 176 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DP N+GAI+RS AF+ DG+I +R S +A K++SGA +P + +NLT Sbjct: 177 DGITDPRNLGAIIRSVSAFAGDGVILPERRSAGVTATAWKTSSGAAARVPVAKATNLTRT 236 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 LQ G+ +GL L Q + + +++G+EGKGL E ++ + + Sbjct: 237 LQNCKKQGYFVVGLDGGGDMSLPQLELATEPLVVVVGSEGKGLSRLVTEHCDAIVSIPIE 296 Query: 258 GIIKALNVSNAAAVALYITQNHFA 281 +++LN S A + LY A Sbjct: 297 SAMESLNASMAVGITLYEIARRRA 320 >gi|257470689|ref|ZP_05634779.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|317064895|ref|ZP_07929380.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|313690571|gb|EFS27406.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] Length = 235 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 4/233 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107 + GV+ V L N + I +L K N +L+ + + + I+ G Sbjct: 4 IIGVNPVIEVLQNKEKNIEKLEMFKGNKDEKLNKIKKIASERNIKIFY-TDKKIENSQGV 62 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 A ++++LD + DP N GA++RSA F GII +R Sbjct: 63 AVYISEYDYYVEFGEFLEKIAPMEKSIVLILDEIQDPRNFGALIRSAEVFGVKGIIIPER 122 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + + + K+++GA+EH+ ++++N+++AL K+ + G + K +E Sbjct: 123 NAVRVNETVVKTSTGAIEHVDIVKVTNISEALLKLKKLDYWVYGAEGEGSKDYSKEKYPS 182 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + AL+LG+EG G+R K +E + + M G I +LNVS A + L F Sbjct: 183 RTALVLGSEGNGIRKKVKENCDVLIKIPMYGKINSLNVSVAGGIILSEIVKSF 235 >gi|254372498|ref|ZP_04987987.1| hypothetical protein FTCG_00059 [Francisella tularensis subsp. novicida GA99-3549] gi|151570225|gb|EDN35879.1| hypothetical protein FTCG_00059 [Francisella novicida GA99-3549] Length = 248 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99 +YG+H V + + K + NA +++ + V + + Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AV + L + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243 Query: 280 FA 281 Sbjct: 244 RT 245 >gi|313115003|ref|ZP_07800496.1| RNA 2'-O ribose methyltransferase substrate binding [Faecalibacterium cf. prausnitzii KLE1255] gi|310622694|gb|EFQ06156.1| RNA 2'-O ribose methyltransferase substrate binding [Faecalibacterium cf. prausnitzii KLE1255] Length = 260 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 104/260 (40%), Gaps = 8/260 (3%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 R + K + + G ++ L T++A+A Sbjct: 3 EKITSRENAKIKYACRLSSSAAFRRSEGRFLAEGRKLCPEL--ARGAQLETLFYTESAMA 60 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 + A LP V DK+ HQG+ TLD V+ + L+ Sbjct: 61 KCPELAGLPG--EHYLVEDHVADKLAD-VGTHQGV-FGVFRTPVHTLDEVKAGGRYLALE 116 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N+G +LRSA AF DG+I + + + +++ GA IP I + DA+ Sbjct: 117 RVQDPGNVGTLLRSAAAFGFDGVILSDGCASVYAPKTLRASMGATVRIPVIEAGAMPDAI 176 Query: 200 QKMHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 ++ + G + + +P Q + +++G+EG+GL +T +S + M Sbjct: 177 TQLRAKGITCLAAALYKSQPLSAAQASYPGGVCVVIGSEGQGLTDETIAACSSTVRIPMT 236 Query: 258 GIIKALNVSNAAAVALYITQ 277 +++LN A ++ L+ + Sbjct: 237 DRVESLNAGIAGSILLWHFR 256 >gi|227877757|ref|ZP_03995791.1| RNA methyltransferase [Lactobacillus crispatus JV-V01] gi|256843610|ref|ZP_05549098.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN] gi|256850086|ref|ZP_05555516.1| rRNA methylase [Lactobacillus crispatus MV-1A-US] gi|293380718|ref|ZP_06626766.1| RNA 2'-O ribose methyltransferase substrate binding [Lactobacillus crispatus 214-1] gi|227862660|gb|EEJ70145.1| RNA methyltransferase [Lactobacillus crispatus JV-V01] gi|256615030|gb|EEU20231.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN] gi|256713058|gb|EEU28049.1| rRNA methylase [Lactobacillus crispatus MV-1A-US] gi|290922682|gb|EFD99636.1| RNA 2'-O ribose methyltransferase substrate binding [Lactobacillus crispatus 214-1] Length = 255 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 78/236 (33%), Gaps = 3/236 (1%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + G H AL + + L + V + Sbjct: 23 YRDDEGLYLIEGFHLFEEALKAGKKYQYILGTEEALDQADSEYEVNLSGKNVVLINKAIA 82 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + + + LL D++ DP N+G I+R+A A DG Sbjct: 83 RHLSSTKNSQEIFMVLKIDQPKEFPFNYGKWVLL---DNLADPGNVGTIIRTADAAGFDG 139 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ + + + ++ G+ HI I+ + L S K L Sbjct: 140 VVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLADVITDFQDAAIPVYASLLDRSAKQLP 199 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K ++ALI+G E G+ A ++ + G ++LN + AA + +Y Sbjct: 200 DFEKVPQLALIIGNEAHGISKTIASLADEKLYIPIKGQAESLNAAVAAGIMIYHFA 255 >gi|302528045|ref|ZP_07280387.1| predicted protein [Streptomyces sp. AA4] gi|302436940|gb|EFL08756.1| predicted protein [Streptomyces sp. AA4] Length = 266 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 100/250 (40%), Gaps = 6/250 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +++ + GV+ V++AL + + +L T+ A A Sbjct: 18 PRVVAARKLTRRA-EREKTGRFLAEGVNAVTSALAHG--TVHELFVTERAAAAHPSLVEA 74 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 T + + + QG+ + + P + +++L++VL V +P N Sbjct: 75 APRVSPIT---ERAAAGLSETVTPQGIVAVCSLVDRPLETVLASARLVVVLVDVAEPGNA 131 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ++R A A D ++ + ++A+G+ H+P R N+ L + + G Sbjct: 132 GTVIRVADAAGADAVVLAGDTVDPHNGKSVRAAAGSTFHVPLARARNIPAVLTALRAAGL 191 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +T+ + LE D +A I G E GL + + + G ++LN++ Sbjct: 192 RTLAAHGYASASLETVRFGDPVAWIFGNEAHGLPEDVLSSVDEAVRIPLYGKAESLNLAT 251 Query: 268 AAAVALYITQ 277 AAAV +Y Sbjct: 252 AAAVCVYTAA 261 >gi|269837199|ref|YP_003319427.1| tRNA/rRNA methyltransferase (SpoU) [Sphaerobacter thermophilus DSM 20745] gi|269786462|gb|ACZ38605.1| tRNA/rRNA methyltransferase (SpoU) [Sphaerobacter thermophilus DSM 20745] Length = 293 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 97/261 (37%), Gaps = 7/261 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +R K +S Q+ + + GV ++ AL+ + + + + L Sbjct: 16 SSQNRWVKLARSL-QRRKARYTERAFLVEGVRLLTDALDAGAVPSVLFIDAEKEHSALTE 74 Query: 84 DA--NLPHPFPVKTVPPQTIDKIVGKEAVH--QGLALETAPLLSPTLDAVRNSQLLMVLD 139 A V V + I E G+ + A + L ++ D Sbjct: 75 LATAAHARGARVIPVTSALLRSIADTETPQGVVGIVPFPELGERGDIGAGATAPLFLIAD 134 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N+G +LR+A+ G+ T + + + ++ GA +P + A Sbjct: 135 GIRDPGNLGTLLRAALGAGAHGVYVTAGTTDPFAPKVVRAGMGAHFRLPIAYLDWR--AP 192 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + I + D++ + +I+G+E +GL P +E AT A + + G Sbjct: 193 APHIAGIATRIAATGDAETVYDAIDWTAPACVIIGSEAEGLSPAAREFATGTARIPLAGG 252 Query: 260 IKALNVSNAAAVALYITQNHF 280 +++LN + A V L+ Sbjct: 253 LESLNAAMAGTVILFEAARQR 273 >gi|33865563|ref|NP_897122.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102] gi|33632732|emb|CAE07544.1| possible tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102] Length = 480 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 75/281 (26%), Positives = 128/281 (45%), Gaps = 23/281 (8%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENL----------FLYGVHTVSAALNNPSRKIF 69 + R ++ + R +PE ++G H+ AAL R I Sbjct: 137 DRRGDRRPSFQRERSRLPFRDRTPRKPEGEAAAATPPADDLVWGRHSALAALEAG-RPIH 195 Query: 70 QLLATKNALARLDWDA----NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 ++ T + + V+ V + +I G +VHQG+AL+TA + Sbjct: 196 RIWCTPEMRSAAKFLQLLRDAKASGVLVEEVTWARLGQITG-GSVHQGIALQTAAAETID 254 Query: 126 LDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L+++ LL+ LD V DPHN+GA++RSA A G++ +R S + AK Sbjct: 255 LESLIEGCSDLGEPPLLLALDGVTDPHNLGAVVRSAEAMGAHGVVLPQRRSAGLTGSAAK 314 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 A+GALEH+P R+ NL +L+K+ G++ IGL+ + L + + L+ G+E + Sbjct: 315 VAAGALEHLPVARVVNLNRSLEKLKDAGYRVIGLAGEGDVTLPDVDLSGPLVLVTGSEDQ 374 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 GL T+ + + + G+ +LN S A A+ +Y Sbjct: 375 GLSLLTRRHCDQLVRIPLRGVTPSLNASVATALCVYEVARR 415 >gi|257090594|ref|ZP_05584955.1| predicted protein [Enterococcus faecalis CH188] gi|312905124|ref|ZP_07764245.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX0635] gi|256999406|gb|EEU85926.1| predicted protein [Enterococcus faecalis CH188] gi|310631514|gb|EFQ14797.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX0635] gi|315166404|gb|EFU10421.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX1341] gi|315579047|gb|EFU91238.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0630] Length = 258 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 95/238 (39%), Gaps = 3/238 (1%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + + G H + A+ + + L + W A + V + + Sbjct: 23 YREELNQYIIEGFHLIEEAVKANADVQWILFNQRGQQEWGTWLAEQETE-KLIFVSDEVL 81 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + LA+ T + + LL+ D++ DP N+G ++R+A A G Sbjct: 82 NSLSELPTSQGILAIVTLETQQEQSLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAG 139 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + + + +S G+ H+P ++ +++ Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYY 199 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ + ALILG EG G+ P+ T ++ M G ++LNV+ AA V ++ +N+ Sbjct: 200 EQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|88803487|ref|ZP_01119012.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii 23-P] gi|88780499|gb|EAR11679.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii 23-P] Length = 254 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 108/240 (45%), Gaps = 10/240 (4%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++G+ + A+ + S KI+ + +L VP + ++++ K Sbjct: 11 IFGLRAIIEAIESGSTLNKIYLQKELRGSLFYELNQLIKEKGITTSLVPIEKLNRLS-KN 69 Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG + +P+ L+ L ++LD ++D N GAI+R+A +G Sbjct: 70 GNHQGAVAQISPVEFYDLEELIEKTLESNKVPLFLLLDQLSDVRNFGAIIRTAECTGVNG 129 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II K S +A K+++GA IP ++ ++ DAL + + +T+ + ++ L Sbjct: 130 IIIQKDGSAPVNAETIKTSAGAAFKIPICKVDHIKDALYILQAAEIKTVAATEKTEDVLY 189 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 N IA+++G+E +G+ P + A L + G I +LNVS A LY T Sbjct: 190 DINLNQPIAIVMGSEQRGINPSILKMVDYKAKLPILGDIASLNVSVACGAFLYETIRQRI 249 >gi|237739549|ref|ZP_04570030.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31] gi|229423157|gb|EEO38204.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31] Length = 234 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 107/226 (47%), Gaps = 4/226 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + GV+ V+ AL N + I +L K + + + + ID G Sbjct: 4 IIGVNPVTEALLNKEKNIEKLELYNGLKGETVQKLKELASKRNIKIFY-TNKKIDNSQGI 62 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + A ++ ++++LD + DP N GAI+RSA F D I+ +R Sbjct: 63 AVYISNFDYYKDFDEAYEELASKDKSVVLILDEIQDPRNFGAIIRSAEVFKVDLILIPER 122 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + + K+++GA+E++ +++NL+D + K+ + G + ++ +E + Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEEDYPN 182 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 KI L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 183 KIVLVLGNEGSGIRKKVREHCDKLIKIPMFGQINSLNVSVASGILL 228 >gi|15608782|ref|NP_216160.1| 23S rRNA methyltransferase TsnR [Mycobacterium tuberculosis H37Rv] gi|148661440|ref|YP_001282963.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium tuberculosis H37Ra] gi|167968402|ref|ZP_02550679.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium tuberculosis H37Ra] gi|306775831|ref|ZP_07414168.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu001] gi|306971937|ref|ZP_07484598.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu010] gi|307079653|ref|ZP_07488823.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu011] gi|1838995|emb|CAB06638.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis H37Rv] gi|148505592|gb|ABQ73401.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium tuberculosis H37Ra] gi|308215746|gb|EFO75145.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu001] gi|308358624|gb|EFP47475.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu010] gi|308362550|gb|EFP51401.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu011] Length = 260 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 101/269 (37%), Gaps = 16/269 (5%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 + + A + HR + G + V+AAL + ++ T+ Sbjct: 5 RSARVATAVKLHRHV-----------GRRRAGRFLAEGPNLVAAALARG--LVREVFVTE 51 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 A R + H V V + + +A+ P + QL+ Sbjct: 52 VAARRHELLLA-AHEASVHLVTERAAKALSDTVTPAGLVAVCDLPATRLEDVLAGSPQLI 110 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 V + +P N G ++R A A +I R + ++++G++ IP + ++ Sbjct: 111 AVTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPYNGKCLRASTGSIFAIPVVVAPDV 170 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAH 253 A+ + + G Q + + D + L+ + A + G E GL + A H Sbjct: 171 GAAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAHGLSAEIAALADHRVH 230 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G ++LNV+ AAA+ LY + + Sbjct: 231 ILMSGGAESLNVAAAAAICLYESARALGR 259 >gi|19704851|ref|NP_602346.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19712732|gb|AAL93645.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 234 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 4/226 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL N + I +L K + D + + I+ G Sbjct: 4 IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKIENSQGV 62 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + ++ L+++LD + DP N GAI+RSA F D II +R Sbjct: 63 AVYISNYDYYKDFDEAYEELVGKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPER 122 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + + K+++GA+E++ +++NL+D + K+ + G + ++ +E ++ Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEANISYNEEDYSN 182 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K+ L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 183 KVVLVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|328676598|gb|AEB27468.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Francisella cf. novicida Fx1] Length = 248 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99 +YG+H V + + K + NA +++ + V + + Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDTFKQLPGRVR 63 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AV + L + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243 Query: 280 FA 281 Sbjct: 244 RT 245 >gi|330469164|ref|YP_004406907.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032] gi|328812135|gb|AEB46307.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032] Length = 274 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 48/263 (18%), Positives = 94/263 (35%), Gaps = 8/263 (3%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 ++ + +++ ++ + + GV ++ A+ + + L T AL+ Sbjct: 2 VLRVSGRNARFQQWEALLHNRTKRQRRGEFLVQGVRPIAMAVEHGWQIRELLYNTSVALS 61 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMV 137 D V + + ++ G +A L L L + + L +V Sbjct: 62 GWARDLLEKVRAEKIAVSRELMHEL-GGKADDVPELLAVVALPEDDLCRIPTGPTMLTVV 120 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-----HIPYIRI 192 D P NIG ++RSA AF G+I T + ++++G+L +P + Sbjct: 121 FDRPTSPGNIGTLVRSADAFGASGVIITGHAADVYDPKAVRASTGSLFALPVVRVPARQA 180 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + G +G + +++G E GL +E + Sbjct: 181 VLSWGVDVRAGGIGMNVVGTDELGALDVADYDFRQPTLIVIGNETTGLSSGWREACDQVV 240 Query: 253 HLHMPGIIKALNVSNAAAVALYI 275 + M G +LN + AA V LY Sbjct: 241 RIPMSGAASSLNAATAATVVLYE 263 >gi|282882312|ref|ZP_06290943.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus lacrimalis 315-B] gi|300813901|ref|ZP_07094205.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297862|gb|EFA90327.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus lacrimalis 315-B] gi|300511964|gb|EFK39160.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 234 Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 104/235 (44%), Gaps = 9/235 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG V AL N L + + ++ + + ++ +DK+ Sbjct: 3 YIYGRGPVIEALKNNKVDKIYLASHEGSIIK-IKAMAKEKKVLISSLSKDRLDKMA-PGK 60 Query: 110 VHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + + + L++LD + DPHN+GAI RSA+ F+ DGII Sbjct: 61 NHQGVVALVSGYEYKDFQELLDENKDKKEFRLLILDKMEDPHNLGAIARSALFFNFDGII 120 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + + K++ GA++++ +++NL+ ++K+ GF + ++ Sbjct: 121 IPKHREALVNDTVYKTSQGAVDNVNICQVTNLSQTIEKLKKAGFWI-YAALLEGDNIKDV 179 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+A+I+G EGKG+ + + + +LN S AA + +Y Sbjct: 180 DFSGKVAIIIGNEGKGISDNLIKASDFKVKIPNLSEFDSLNASVAAGIIMYEVIR 234 >gi|326569788|gb|EGE19838.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8] Length = 258 Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 92/257 (35%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K + R + + GVH V A L I +L+ +++A A + Sbjct: 5 SKDNPIIKHTHALLGHHRTRKKSRQTVIEGVHLVEAYLKQTP-AIHRLIVSESATAHDEV 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 L P + + + + +L + L++ D + D Sbjct: 64 LPLLSQIDPKQITIISDTLYQQIRTLGDSVSVMAVIDIPHRSLPTISGDCLIL--DGLQD 121 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 NIG +LR+A A +IT+ + S ++ GA + I + + Sbjct: 122 LGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHF---SMSIYEHIAVNEILQ 178 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 SS + K + IA +LG EG+G+R + A L PG ++L Sbjct: 179 KLKTPLYATSSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNA-IPIALPQPGGQESL 237 Query: 264 NVSNAAAVALYITQNHF 280 NV A +V Y Sbjct: 238 NVGIAGSVCFYEMLRQR 254 >gi|50955381|ref|YP_062669.1| tRNA/rRNA methyltransferase protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951863|gb|AAT89564.1| tRNA/rRNA methyltransferase protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 336 Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 68/284 (23%), Positives = 119/284 (41%), Gaps = 19/284 (6%) Query: 18 SHYAKLRRNHRDYKK------MQSFNQKSRHTSQPE--NLFLYGVHTVSAALNN--PSRK 67 +H K+ R K+ + ++ + + G ++V AL P Sbjct: 49 AHKNKVLRERAAAKRGTGHDAAPRGAYGASRRAKTGDESEIVTGRNSVLEALRARIPGTT 108 Query: 68 IFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 ++ + + + PV + +D++ G++AVHQG+AL+ P Sbjct: 109 LYIAARVELDDRVKEILSLATGRAIPVLEIMRPELDRLAGRDAVHQGVALKVPPYEYVHP 168 Query: 127 D-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + L + LD + DP N+GAI+RS AF G+I +R S +A K+ Sbjct: 169 GELLDRTLRNGETPLFVALDGITDPRNLGAIIRSTAAFGGQGVIVPQRRSAGMTASAWKT 228 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGK 238 ++GA P SNLT L+ G +GL PL + + +++G+EGK Sbjct: 229 SAGAAARTPVAMASNLTQTLKAFKQAGVFVLGLDGGGDTPLPGLSFADRPVVIVVGSEGK 288 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G+ ET ++ + + ++LN AA+V LY A+ Sbjct: 289 GISRLVAETCDAVVSIPIAATTESLNAGIAASVTLYEIAKLRAQ 332 >gi|262066778|ref|ZP_06026390.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium periodonticum ATCC 33693] gi|291379581|gb|EFE87099.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium periodonticum ATCC 33693] Length = 234 Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 107/226 (47%), Gaps = 4/226 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + GV+ V+ AL N + I +L K + + + + ID G Sbjct: 4 IIGVNPVTEALLNKEKNIEKLELYNGLKGETVQKLKELASKRNIKIFY-TNKKIDNSQGV 62 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + A +N ++++LD + DP N GAI+RSA F D I+ +R Sbjct: 63 AVYISNFDYYKDFDEAYEELASKNKSVVLILDEIQDPRNFGAIIRSAEVFKVDLILIPER 122 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + + K+++GA+E++ +++NL+D + K+ + G + ++ +E + Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEEDYPN 182 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 KI L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 183 KIVLVLGNEGSGIRKKVREHCDKLIKIPMFGQINSLNVSVASGILL 228 >gi|34763276|ref|ZP_00144235.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887047|gb|EAA24159.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 234 Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 108/226 (47%), Gaps = 4/226 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL N + I +L K + D + + ID G Sbjct: 4 IIGINPVTEALLNKEKNIEKLEFYNGLKGETVQKLKDLASKRNIKIFY-TGKKIDNSQGV 62 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + A ++ L+++LD + DP N GAI+RSA F D II +R Sbjct: 63 AVYISNYDYYKDFDEAYEELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPER 122 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + + K+++GA+E++ +++NL+D + K+ + G + ++ +E ++ Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEENYSN 182 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 KI L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 183 KIILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|145295523|ref|YP_001138344.1| hypothetical protein cgR_1451 [Corynebacterium glutamicum R] gi|140845443|dbj|BAF54442.1| hypothetical protein [Corynebacterium glutamicum R] Length = 271 Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 98/255 (38%), Gaps = 7/255 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + ++ + + + G ++V AA+ + L T++A R + Sbjct: 14 PRIVNAAKLH-RAAQRKKDKRFLVEGENSVEAAVATGAATD--LFVTESAAERFEEIVRT 70 Query: 88 PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V T + + + AL L S +L+ V +P Sbjct: 71 AGYMNVYTHAITDKAAKHLSDTVTTTGIFALCDDVLWSVGKAITGQPRLVSVPVETREPG 130 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G ++R + A D ++ A +S++G+L HIP R +N+ D L ++ S Sbjct: 131 NAGTLIRVSDAVGADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARNNNIADVLGQLRSK 190 Query: 206 GFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G Q + S+D + L+ A + G E GL A + + G ++L Sbjct: 191 GLQILATSADGEVDLDDADELLAKPTAWLFGNEAHGLDESLLAQADHRVRIPIRGRAESL 250 Query: 264 NVSNAAAVALYITQN 278 N++ AA++ LY + Sbjct: 251 NLATAASICLYESSK 265 >gi|62390273|ref|YP_225675.1| 23S ribosomal RNA methyltransferase [Corynebacterium glutamicum ATCC 13032] gi|41325610|emb|CAF21399.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Corynebacterium glutamicum ATCC 13032] Length = 282 Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 98/255 (38%), Gaps = 7/255 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + ++ + + + G ++V AA+ + L T++A R + Sbjct: 25 PRIVNAAKLH-RAAQRKKDKRFLVEGENSVEAAVATGAATD--LFVTESAAERFEEIVRT 81 Query: 88 PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V T + + + AL L S +L+ V +P Sbjct: 82 AGYMNVYTHAITDKAAKHLSDTVTTTGIFALCDDVLWSVGKAITGQPRLVSVPVETREPG 141 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G ++R + A D ++ A +S++G+L HIP R +N+ D L ++ S Sbjct: 142 NAGTLIRVSDAVGADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARNNNIADVLGQLRSK 201 Query: 206 GFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G Q + S+D + L+ A + G E GL A + + G ++L Sbjct: 202 GLQILATSADGEVDLDDADELLAKPTAWLFGNEAHGLDESLLAQADHRVRIPIRGRAESL 261 Query: 264 NVSNAAAVALYITQN 278 N++ AA++ LY + Sbjct: 262 NLATAASICLYESSK 276 >gi|294783389|ref|ZP_06748713.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp. 1_1_41FAA] gi|294480267|gb|EFG28044.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp. 1_1_41FAA] Length = 234 Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 107/226 (47%), Gaps = 4/226 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + GV+ V+ AL N + I +L K + + + + ID G Sbjct: 4 IIGVNPVTEALLNKEKNIEKLELYNGLKGETVQKLKELASKRNIKIFY-TNKKIDNSQGV 62 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + A ++ ++++LD + DP N GAI+RSA F D I+ +R Sbjct: 63 AIYISNFDYYKDFDEAYEELASKDKSVVLILDEIQDPRNFGAIIRSAEVFKVDLILIPER 122 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + + K+++GA+E++ +++NL+D + K+ + G + ++ +E + Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEEDYPN 182 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 KI L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 183 KIVLVLGNEGSGIRKKVREHCDKLVKIPMFGQINSLNVSVASGILL 228 >gi|254373959|ref|ZP_04989441.1| hypothetical protein FTDG_00115 [Francisella novicida GA99-3548] gi|151571679|gb|EDN37333.1| hypothetical protein FTDG_00115 [Francisella novicida GA99-3548] Length = 248 Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99 +YG+H V + + K + NA +++ + V + + Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AV + L + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETLRQ 243 Query: 280 FA 281 Sbjct: 244 RI 245 >gi|111225852|ref|YP_716646.1| tRNA/rRNA methyltransferase [Frankia alni ACN14a] gi|111153384|emb|CAJ65140.1| tRNA/RRNA methyltransferase [Frankia alni ACN14a] Length = 348 Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 61/252 (24%), Positives = 100/252 (39%), Gaps = 13/252 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKT 95 R + + G + V AL L + V Sbjct: 97 PRTRRSEADELVVGRNAVVEALRAG-VPASNLYVAGGLDFDERLADARRLAARAGIAVVD 155 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGA 149 V +D++ G A HQGLAL P D + L++ LD V DP N+GA Sbjct: 156 VARPDLDRMCG-TAPHQGLALAVPPFRYTHPDDLLARARAAAPGLVVALDGVTDPRNLGA 214 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQ 208 ++RSA AF G++ +R + +A K+++GA +P R +NL + + F Sbjct: 215 VVRSAAAFGAHGVLVPERRAAGITAAAWKTSAGAAARLPVARATNLARTLVSYAEAGLFV 274 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + E E+ D + L++G+EG+GL ++ + M G +++LN A Sbjct: 275 VGLAADADTTIDELEMATDPVVLVIGSEGRGLSRLVEQRCDVTVRIPMAGAVESLNAGVA 334 Query: 269 AAVALYITQNHF 280 A +AL Sbjct: 335 AGIALAEIARRR 346 >gi|169797417|ref|YP_001715210.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|213155769|ref|YP_002317814.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii AB0057] gi|301345142|ref|ZP_07225883.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii AB056] gi|301510697|ref|ZP_07235934.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii AB058] gi|301594957|ref|ZP_07239965.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii AB059] gi|169150344|emb|CAM88241.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|213054929|gb|ACJ39831.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii AB0057] Length = 249 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 12/242 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 YGVH+V + L ++ L K RL L V+ +++K+ G Sbjct: 8 YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGLP 67 Query: 109 AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ P + L LL+ LD V DPHN+GA +R+A A + Sbjct: 68 -FHQGVVAAVRPHPTLNEKDLDQLLTETPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPL 220 I + S S + K A+G E + +I+++NL K + + ++ P+ Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDENALPI 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + + +++GAE GLRP TQ A++ M G +++LNVS A +ALY Sbjct: 187 QKCDFSGAVVIVMGAEDTGLRPITQAQCDQKAYIPMSGNLQSLNVSVATGMALYEACRQR 246 Query: 281 AK 282 ++ Sbjct: 247 SE 248 >gi|297155951|gb|ADI05663.1| rRNA methylase [Streptomyces bingchenggensis BCW-1] Length = 277 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 53/263 (20%), Positives = 97/263 (36%), Gaps = 12/263 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + ++S + + G V A+ + + ++ T A AR Sbjct: 10 RSPRVTAARRLAKRS-FRGKERRFLVEGPQAVREAMAH----LVEVYVTPEAAARHADIV 64 Query: 86 NLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 PV T + + ++ + L +L+ VL HV D Sbjct: 65 AAARAAGAPVLTATDEVVAEMSDTVTPQGIVGLCRFLDTPFEEILRARPRLVAVLAHVRD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N G +LR A A D ++ T + +++ G+L H+P + A+ + Sbjct: 125 PGNAGTVLRCADAAGADAVVLTDASVDLYNPKSVRASVGSLFHLPVAVGVPVERAVSGLR 184 Query: 204 SWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 G + + ++ L+ E + A I G E GL T+ A + + + G Sbjct: 185 EAGARVVAADGAGERDLDTELDEGVLGAPTAWIFGNEAWGLPEPTRALADEVVRVPIHGR 244 Query: 260 IKALNVSNAAAVALYITQN-HFA 281 ++LN++ AAAV LY + A Sbjct: 245 AESLNLATAAAVCLYASARAQRA 267 >gi|291546244|emb|CBL19352.1| rRNA methylases [Ruminococcus sp. SR1/5] Length = 274 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 97/260 (37%), Gaps = 11/260 (4%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ +R + + AL++ + I L+ K+ Sbjct: 18 YARISEIQLLNRAEPEKGIFIAESPKVIERALDSGCQPISFLVEHKHVEGEAKELIRRCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + ++ G + L P L +D +N++ + VL++V +P NIGA Sbjct: 78 DIPVYTAEFDVLTQLTGFKLTRGMLCAMRRPALPDIVDVCKNARRIAVLENVVNPTNIGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-------M 202 I RSA A D ++ T S + + G + IP+ T+ + M Sbjct: 138 IFRSAAALGMDAVLLTPGCSNPLYRRAIRVSMGTVFQIPWTFFDEKTEWKTEGIRSLKAM 197 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + +K+A++LG EG GL +T + M + + Sbjct: 198 GFKTAAMALREDSFDIDDPHLMAEEKLAVVLGTEGDGLASETIADCDYTVCIPMAHGVDS 257 Query: 263 LNVSNAAAVALYITQNHFAK 282 LNV+ A+AVA + K Sbjct: 258 LNVAAASAVAFW----QLGK 273 >gi|328675679|gb|AEB28354.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Francisella cf. novicida 3523] Length = 248 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 108/242 (44%), Gaps = 10/242 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99 +YG+H V + + K + NA +++ + + + + Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEDIISRAESKGLKITYIDNFKQLPGRIR 63 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 A+ + TL + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAIEINDFKTYSENDIETLIPKDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSSPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGIWVIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L D +A++ GAEG G+R +T+ + +A L M G + +LNVS A +ALY T Sbjct: 184 LYSMNLEDSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243 Query: 280 FA 281 Sbjct: 244 RT 245 >gi|319941637|ref|ZP_08015961.1| hypothetical protein HMPREF9464_01180 [Sutterella wadsworthensis 3_1_45B] gi|319804867|gb|EFW01721.1| hypothetical protein HMPREF9464_01180 [Sutterella wadsworthensis 3_1_45B] Length = 274 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 85/268 (31%), Gaps = 6/268 (2%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 H + K+ + +++ + L G+H + L +P KI ++ + Sbjct: 4 SQHLFIESDANPRLKRWRRLALEAKAVRREGATVLEGIHLLQTVLEHPEVKINAVMLPEG 63 Query: 77 A----LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132 L A + + + D I E + P Sbjct: 64 RTTAEAKALAERAAQTLGTRLYVLSDRLYDAISPVENGVGVMCEIALPAAPAPEKWAAAD 123 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L + D V D N+G ++R+A A ++ + + + ++ GA + Sbjct: 124 ALYL--DGVQDAGNVGTLIRTAAAAGVRVVVAGPGTAGLWTPRVLRAGMGAHFAVDLAEG 181 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 ++ + I ++GAEG GL K E A Sbjct: 182 ISIEKFRADYRGRLLAADARGGVNLFEASDYTAAGPICWLMGAEGPGLSVKALELADERY 241 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +++LNV AAAV L+ Sbjct: 242 WIPISRSVESLNVGAAAAVCLFDAARRR 269 >gi|256384063|gb|ACU78633.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12] gi|256384895|gb|ACU79464.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12] gi|296455884|gb|ADH22119.1| rRNA methylase [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 255 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 58/280 (20%), Positives = 108/280 (38%), Gaps = 29/280 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +IS + KI + +H ++ + + G H + A Sbjct: 1 MEVISSVSNPKIKEILKLKD-------------------RKHRNKQKLFIVEGFHMIMEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I LL T AL +P+ V + KI Q A+ + P Sbjct: 42 --YNDQIIKTLLGTSKAL--EILKDEIPNIEQVIEISENVAKKISDTVTSQQIFAICSMP 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + +++LD + DP N+G ++RSA +F+ +I + + + +S Sbjct: 98 ENT----KIDFENNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRST 153 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGK 238 G L + + +T Q + D KPL + +DK ALI+G EGK Sbjct: 154 QGNLFQVNLVNEYLVTVINQLHDNNYIIIGTSLHDDSKPLSKVKFDSDDKYALIIGNEGK 213 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 G+ P+ + ++ M + ++N + A ++ +Y N Sbjct: 214 GISPELLDLIDLNINIEMAEDVDSINAAVAGSIIMYQINN 253 >gi|331703507|ref|YP_004400194.1| rRNA methylase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802062|emb|CBW54216.1| rRNA methylase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 255 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 59/280 (21%), Positives = 109/280 (38%), Gaps = 29/280 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +IS + KI + +H ++ + + G H + A Sbjct: 1 MEVISSVSNPKIKEILKLKD-------------------RKHRNKQKLFIVEGFHMIMEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I LL T AL L + P+ V + KI Q A+ + P Sbjct: 42 --YNDQIIKTLLGTSKALEVLKDEI--PNIEQVIEISENVAKKISDTVTSQQIFAICSMP 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + +++LD + DP N+G ++RSA +F+ +I + + + +S Sbjct: 98 ENT----KIDFENNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRST 153 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGK 238 G L + + +T Q + D KPL + +DK ALI+G EGK Sbjct: 154 QGNLFQVNLVNEYLVTVINQLHDNNYIIIGTSLHDDSKPLSKVKFDSDDKYALIIGNEGK 213 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 G+ P+ + ++ M + ++N + A ++ +Y N Sbjct: 214 GISPELLDLIDLNINIEMAEDVDSINAAVAGSIIMYQINN 253 >gi|256819298|ref|YP_003140577.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] gi|256580881|gb|ACU92016.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] Length = 243 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 44/253 (17%), Positives = 93/253 (36%), Gaps = 21/253 (8%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K +Q QK ++ ++ + G ++ L R +LL A Sbjct: 6 QVKLIQKLQQK-KYRNELNLFIVEGKKSIVEFLQAGYR--LELLIATEVF------ATAL 56 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + P+ V + + K+ + +GLA+ L +++ LD+V DP N+G Sbjct: 57 NGQPITLVSKEELRKVSSLKNPDEGLAIFHQRQHKGIL----QEGVILALDNVQDPGNLG 112 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++R F + +I + + + ++ G+L + + + Sbjct: 113 TLIRLCDWFGIETLICNSQTVDCYNPKVVQATMGSLTRVAVHYVDL-----AGFLATCAL 167 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNV 265 + + L + LILG E G+ P+ + A + + G ++LNV Sbjct: 168 PLYAMDLDGENLYTTEFPEDCVLILGNEANGISPEVRALADGIITIPRFGKLQQTESLNV 227 Query: 266 SNAAAVALYITQN 278 + A A+ + + Sbjct: 228 AMAGAIVVSQVRK 240 >gi|294784858|ref|ZP_06750146.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp. 3_1_27] gi|294486572|gb|EFG33934.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp. 3_1_27] Length = 234 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 108/226 (47%), Gaps = 4/226 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL N + I +L K + D + + ID G Sbjct: 4 IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKIDNSQGV 62 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + A ++ L+++LD + DP N GAI+RSA F D II +R Sbjct: 63 AVYISNYDYYKDFDEAYEELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPER 122 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + + K+++GA+E++ +++NL+D + K+ + G + ++ +E ++ Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEENYSN 182 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 KI L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 183 KIILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|88658569|ref|YP_507224.1| RNA methyltransferase [Ehrlichia chaffeensis str. Arkansas] gi|88600026|gb|ABD45495.1| RNA methyltransferase, TrmH family, group 3 [Ehrlichia chaffeensis str. Arkansas] Length = 252 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 76/238 (31%), Positives = 130/238 (54%), Gaps = 9/238 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-----ANLPHPFPVKTVPPQT 100 +++YG H +AAL N +RK +LL T+N + + +K V P Sbjct: 3 KNKIWIYGKHPCTAALQNKNRKCHELLVTENFMKNNNEISKILRLCKQKNINLKQVNPNY 62 Query: 101 IDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I+ ++ + HQG+AL+ + + L+ + S +++LD V D HN+G+I+RSAV Sbjct: 63 INSVLPHNSNHQGIALKASVIDSTTVEEVLNTSKESSTIILLDQVTDIHNVGSIIRSAVC 122 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F+ D II SPSE+ ++K++SGA++ IP + + N+ + ++ + G+ G + Sbjct: 123 FNVDAIILPYHNSPSENCGMSKTSSGAVDMIPIVYVINIVNTIKLLKKAGYWCYGFDAKE 182 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L + + K +I G+E KG+R T+E + + + I +LNVSNAAAVALY Sbjct: 183 GEFLHKTKLDSKKLIIFGSEDKGMRKLTKENCDFLLKIAISKKIDSLNVSNAAAVALY 240 >gi|257462508|ref|ZP_05626920.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] gi|317060164|ref|ZP_07924649.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] gi|313685840|gb|EFS22675.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] Length = 238 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 4/231 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107 + GV+ V LNN + I +L K + + + ++ G Sbjct: 4 VIGVNPVLEVLNNREKTIEKLEVYKGVRGEILQKIQRLASERNVKIFY-TNKKVENSQGF 62 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 A R+ +L++LD + DP N GA++RSA F DGI+ +R Sbjct: 63 CIFLTDYDYYQDFDEFLERMAGRSQSILLMLDEIQDPRNFGALIRSAEVFGVDGILIPER 122 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + + K+++GA+E++P I+++NL++A++K+ + G + +++ ++E Sbjct: 123 NSVRINETVVKTSTGAIEYVPIIKVTNLSNAIEKLKKIDYWVYGAAGEAELSCQEEQYPK 182 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K+ LILG EG GLR K +E + + M G I +LNVS A + L Sbjct: 183 KVVLILGNEGTGLRKKVREHCDKLIKIQMRGKINSLNVSVAGGILLSEIAK 233 >gi|169634562|ref|YP_001708298.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF] gi|184156660|ref|YP_001844999.1| rRNA methylase [Acinetobacter baumannii ACICU] gi|215484855|ref|YP_002327094.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB307-0294] gi|239500941|ref|ZP_04660251.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB900] gi|260556309|ref|ZP_05828528.1| rRNA methylase [Acinetobacter baumannii ATCC 19606] gi|332854391|ref|ZP_08435343.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6013150] gi|332867606|ref|ZP_08437754.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6013113] gi|332873068|ref|ZP_08441025.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6014059] gi|169153354|emb|CAP02471.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii] gi|183208254|gb|ACC55652.1| rRNA methylase [Acinetobacter baumannii ACICU] gi|193076173|gb|ABO10788.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] gi|213985701|gb|ACJ56000.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB307-0294] gi|260410364|gb|EEX03663.1| rRNA methylase [Acinetobacter baumannii ATCC 19606] gi|322506547|gb|ADX02001.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii 1656-2] gi|323516426|gb|ADX90807.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715] gi|332728067|gb|EGJ59458.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6013150] gi|332733880|gb|EGJ65026.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6013113] gi|332738580|gb|EGJ69450.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6014059] Length = 249 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 12/242 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 YGVH+V + L ++ L K RL L V+ +++K+ G Sbjct: 8 YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGLP 67 Query: 109 AVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ P + LL+ LD V DPHN+GA +R+A A + Sbjct: 68 -FHQGVVAAVRPHPTLNEKDLDQLLAETPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPL 220 I + S S + K A+G E + +I+++NL K + + ++ P+ Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDENALPI 186 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + + +++GAE GLRP TQ A++ M G +++LNVS A +ALY Sbjct: 187 QKCDFSGAVVIVMGAEDTGLRPITQAQCDQKAYIPMSGNLQSLNVSVATGMALYEACRQR 246 Query: 281 AK 282 ++ Sbjct: 247 SE 248 >gi|332299742|ref|YP_004441663.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas asaccharolytica DSM 20707] gi|332176805|gb|AEE12495.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas asaccharolytica DSM 20707] Length = 247 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 100/242 (41%), Gaps = 13/242 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106 +YG+H ++ +L + S I ++ K A+ + PV VP + +++ Sbjct: 6 LIYGIHALNESLASHSD-IDKIYMKKGAVTGELLEIKRTARTQGVPVMEVPAERLNRFT- 63 Query: 107 KEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ +P+ L+ +++LD V D N GAI R+ Sbjct: 64 -RGAHQGVVALISPITYTRLESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCECAGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 I+ +R S S +A +++GAL IP R +L A + + G Q +G D+ Sbjct: 123 HAIVIPERDSVSVTADAVNASAGALMRIPVCRERDLVTACRFLRDSGLQLVGADVDATTN 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +++G+E KG+ + T + G I +LNVS A + LY Sbjct: 183 YTSLPMTPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEVVRQ 242 Query: 280 FA 281 Sbjct: 243 HN 244 >gi|189502510|ref|YP_001958227.1| hypothetical protein Aasi_1164 [Candidatus Amoebophilus asiaticus 5a2] gi|189497951|gb|ACE06498.1| hypothetical protein Aasi_1164 [Candidatus Amoebophilus asiaticus 5a2] Length = 246 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++G V A+ KIF TKNA + ++A P VP ++K+V Sbjct: 7 IFGSKAVLEAILAGKTIDKIFIDKDTKNADYQSIFNAIRYKQIPCSRVPVAKLNKLV--P 64 Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ +P+ TL + L+++LD V D N+GAI+R+AV Sbjct: 65 LNHQGIVALLSPVPLVTLSHIVQDTYEKGELPLIIILDGVTDVGNLGAIVRTAVCVGAHA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ K+ S S + K+++GAL H+P R +NL ++ + + G Q I ++ + Sbjct: 125 LVLPKQGSASLGSGAMKTSAGALAHLPICREANLQASINYLQNSGLQVIACHEKTQTSIY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 Q A++LG+E KG++P+ A + M G I +LNVS AAA+ LY + Sbjct: 185 QVKLTVPTAILLGSEDKGIQPQLLNKVDVQASIPMVGPISSLNVSVAAAIILYESFRQRN 244 >gi|256617041|ref|ZP_05473887.1| rRNA methylase [Enterococcus faecalis ATCC 4200] gi|307277164|ref|ZP_07558268.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX2134] gi|256596568|gb|EEU15744.1| rRNA methylase [Enterococcus faecalis ATCC 4200] gi|295113457|emb|CBL32094.1| rRNA methylases [Enterococcus sp. 7L76] gi|306506094|gb|EFM75260.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX2134] Length = 258 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 94/237 (39%), Gaps = 3/237 (1%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + + G H V A+ + + L + W A + V + ++ Sbjct: 24 REELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTWLAEQETE-KLIFVSDEVLN 82 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + LA+ T + + LL+ D++ DP N+G ++R+A A G+ Sbjct: 83 SLSELPTSQGILAIVTLETQQEQSLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAGV 140 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K + + + +S G+ H+P ++ +++ + Sbjct: 141 ILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYYE 200 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + ALILG EG G+ P+ T ++ M G ++LNV+ AA V ++ +N+ Sbjct: 201 QEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|157273421|gb|ABV27320.1| TsnR [Candidatus Chloracidobacterium thermophilum] Length = 282 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 60/271 (22%), Positives = 107/271 (39%), Gaps = 14/271 (5%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 RN+ K+ + + RH +F+ GV V AL + + +F+ +A Sbjct: 2 LTDTITSRNNPLIKRFLAARE-GRHRH---VIFIEGVRLVEEALRS--KIVFEAVAYTPR 55 Query: 78 LARL---DWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132 L P + + + I E + L P + + Sbjct: 56 LYETPRGAQLLAALQSQPCRGARLTEALMAYISDVETAPGVIVLGQRPSSTLPDLTHHPA 115 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L ++ D + P N+GA++R+A A GI+ T ++A+G+ +P I Sbjct: 116 PLFVLADGIQSPGNLGALIRTAEAAGATGILVTVGTVDPFQPKALRAAAGSAFRLPIIAG 175 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR---PKTQETAT 249 S++ D LQK++ G + + P E + L LG+EG GLR + Sbjct: 176 SSVADELQKLYRQGVRLVTADIHGDTPYEAFDWRQPVLLWLGSEGHGLRSLTDDFKHRLA 235 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G +++LNV+ A A+ LY + Sbjct: 236 ARLVIPMEGQVESLNVAVAGAILLYEARRQR 266 >gi|288927311|ref|ZP_06421158.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317 str. F0108] gi|288330145|gb|EFC68729.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317 str. F0108] Length = 267 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 93/268 (34%), Gaps = 7/268 (2%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I SL + + ++R + AL+ + Sbjct: 4 ERITSLTHPGVE-------VFSALTETQLRNRLQPDKGVFIAESPKVIRVALDAGYEPLS 56 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 + ++ + + PV T + ++ G L +A Sbjct: 57 MMCEERHIVGDAADIISRCGDIPVYTGERALLAQLTGYTLTRGVLCAMRRKPTRSVAEAC 116 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++ + V+D V D NIGAI RSA A D ++ K + + + G++ +P+ Sbjct: 117 ADATRVCVIDGVTDTTNIGAIFRSAAALGIDAVVLAKNACDPLNRRAVRVSMGSVFLVPW 176 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 L + + + ++A+++G EG GL + A Sbjct: 177 TWSEQPLAELSALGFRTAAMALTHNSISLDDAKLKAEPRLAIVMGTEGDGLPHQVIAQAD 236 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + M + +LNV+ A+AVA + + Sbjct: 237 YVVRIPMAHGVDSLNVAAASAVAFWELR 264 >gi|238927108|ref|ZP_04658868.1| TrmH family rRNA methyltransferase [Selenomonas flueggei ATCC 43531] gi|238885088|gb|EEQ48726.1| TrmH family rRNA methyltransferase [Selenomonas flueggei ATCC 43531] Length = 276 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 93/263 (35%), Gaps = 8/263 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLD 82 + +++ + R + F+ G+ A+ + + ++ A K +L Sbjct: 11 ENPLIRRLAMLIRSPRRAVKENVFFVEGLRLAEMAVQSNWAILHAVVTEHAMKMERMQLL 70 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQLLMVLD 139 P+ +V + ++ + L + L + LD Sbjct: 71 LTKLSARNIPIASVSERLFSACSETDSPQGIILLLQRLPCTPLEEMVQVTEGLPLYLALD 130 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N+G ILR+A A G+I + + + + ++A G+L ++P++ + D + Sbjct: 131 RVQDPGNVGTILRTADAAGASGVILLRGCADVYGSKVVRAAMGSLFYLPFVTGVDEEDLV 190 Query: 200 QKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + + ++LG E G+ + A ++ M G Sbjct: 191 RFAKENVLCFYAAACDTDGVTHFAAELSRPSLVVLGNEANGVSERLL-RAGQHLYVPMCG 249 Query: 259 IIKALNVSNAAAVALYITQNHFA 281 ++LNV+ AA LY Sbjct: 250 RAESLNVAAAATAILYEAIRQRK 272 >gi|156741421|ref|YP_001431550.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus castenholzii DSM 13941] gi|156232749|gb|ABU57532.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus castenholzii DSM 13941] Length = 235 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 81/237 (34%), Gaps = 9/237 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--WDANLPHPFPV-KTVPPQTIDKI 104 L GV V+ AL + + L A + PV PQ I + Sbjct: 1 MFVLEGVRLVADALESGATLTLVLYAPEQLQQTPAGLDLLQRLQRLPVGYAATPQVIASV 60 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 L L++V+D V DP N+G +LRSA A + Sbjct: 61 ADTVHPQG-----VVALARWPQIPPGKPGLILVIDAVQDPGNLGTLLRSAEAVGVAQTLC 115 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + + + +SA GA + + + +++ ++ P Sbjct: 116 SVGTVDVYAPKVVRSAMGAHIRLSIEQDVRWDEIGERLADVDHVYA-ADPHARMPYYAAD 174 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 AL++G E GL + AT + M G ++LNV+ AA+V L+ Sbjct: 175 WRQPSALLVGNEAHGLSEAARRLATKPITIPMCGRAESLNVAVAASVILFEALRQRT 231 >gi|332669127|ref|YP_004452135.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas fimi ATCC 484] gi|332338165|gb|AEE44748.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas fimi ATCC 484] Length = 335 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + G ++V AL + + + R +P+ V +D++ Sbjct: 91 EIVSGRNSVVEALRAGI-PVSTVYLAARLEADDRTREIVSTAAEAGYPLLEVSRTELDRL 149 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 +VHQG+A++ P + L++ LD V DP N+GA+LRSA AF Sbjct: 150 TD-GSVHQGVAIQVPPYAYADEEDLLDAAEVSGRPALVVALDGVTDPRNLGAVLRSAGAF 208 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G++ +R + +A K ++GA +P R++NL LQ G +GL Sbjct: 209 GAHGVLVPERRAAGVTASAWKVSAGAAARVPVARVTNLVRTLQAYKEAGVFVVGLDGGGD 268 Query: 218 KPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + + D + L++G+EGKGL +E ++A + + +++LN AA +ALY Sbjct: 269 QSVAELAFAEDPLVLVVGSEGKGLSRLVREQCDAIASIPIASAVESLNAGVAAGIALYEV 328 Query: 277 QNHFAK 282 + Sbjct: 329 ARRRGE 334 >gi|187250823|ref|YP_001875305.1| rRNA methylase [Elusimicrobium minutum Pei191] gi|186970983|gb|ACC97968.1| rRNA methylase [Elusimicrobium minutum Pei191] Length = 249 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 103/241 (42%), Gaps = 13/241 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL----ARLDWDANLPHPFPVKTVPPQTID 102 ++GVH V+ + N R++ QL N A + + + +T+D Sbjct: 4 NLDIVFGVHAVTEVIKNRKRRVIQLYVLDNKAGHRGIEDAIKAAKRNNIKIDRMDVKTMD 63 Query: 103 KIVGKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K+ HQG+A P+ L L + +D + DP N+G+I+RSA Sbjct: 64 ALT-KKGNHQGIAARVEPVKIMRLIDAIDVSRGNKKDLWIAVDEMTDPQNLGSIIRSAAC 122 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 II R + + + K ASGA E + + ++NL I + Sbjct: 123 LGFSTIILPSRRTVGLTPSVYKVASGATEKVTVVEVANL-ATALLDLKDEGFWIYGADMG 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKALNVSNAAAVALYI 275 + + + + L++G+EG G+R KT E + + PG + +LN +NAA++ ++ Sbjct: 182 GQSIVKTDYSFPAVLVVGSEGTGIREKTAEHCDQVVSIPQAPGSVDSLNAANAASIIMFD 241 Query: 276 T 276 Sbjct: 242 M 242 >gi|256380292|ref|YP_003103952.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum DSM 43827] gi|255924595|gb|ACU40106.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum DSM 43827] Length = 248 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 107/236 (45%), Gaps = 5/236 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG V AL++P ++ ++L + A + DA V+ Q + + G Sbjct: 12 VYGRKPVLEALDDPRLEVDKVLMAEGARGPAAKEILDAASRRGVRVQRATAQRVKVLAGN 71 Query: 108 EAVHQGLALET--APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 QG+ + + L + +++LD + P N+G ILR+A A +GI+ Sbjct: 72 GRHDQGVLADVVAPRMAPLALALESRPRGVLLLDGITTPANVGMILRTATAAGVEGIVVP 131 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 +R S ++ K+++G P +R +A ++ + G+ L + +K+ + Sbjct: 132 RRGVASIDPLVVKASAGVAFRAPVLRCGTAAEAAAQLRAAGYPLFALDASAKRSVYAAEL 191 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ A +LG+E G+ +E T + M +++LNV++AAAV + + Sbjct: 192 PERAAFVLGSETAGVSDGVREHVTDWLSIPMAAGVESLNVASAAAVLCFEVVRRRS 247 >gi|89890886|ref|ZP_01202395.1| methyltransferase, SpoU rRNA Methylase family [Flavobacteria bacterium BBFL7] gi|89517031|gb|EAS19689.1| methyltransferase, SpoU rRNA Methylase family [Flavobacteria bacterium BBFL7] Length = 271 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 98/277 (35%), Gaps = 17/277 (6%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72 +K H + + + +KS+ + + G + ++ ++ QLL Sbjct: 2 KHIKSPH-------NAIIRHAELLQRKSKARKKEGLFLIEGQREIM-LGDHGGFELQQLL 53 Query: 73 ATKNAL--ARLDWDANLPHPF------PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 + L D+++ H V ++ + +K+ + +A A Sbjct: 54 VCGSILLGTEDFQDSDVYHKININSTPEVISITQEVYEKLAYRTGTEGVIAFAKAKSQQL 113 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + + L+++ + P N+GAILR+A A D +I +S Sbjct: 114 QDLKLSKNPLILIAESPEKPGNLGAILRTADAAKVDAVII-ANPVADLFNPNVVRSSVGC 172 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 ++ + + S + S + + A+ LG E GL + Sbjct: 173 VFTVPTATGTTSEVVDFLKSKNINLYAATLQSSERYDTMDYTSGSAIALGTEATGLTQEM 232 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ A + M G I ++N+S +AA+ ++ + Sbjct: 233 RDAAMQNIIIPMSGTIDSMNLSVSAAILIFEAKRQRN 269 >gi|256027521|ref|ZP_05441355.1| 23S rRNA methyltransferase [Fusobacterium sp. D11] gi|289765481|ref|ZP_06524859.1| 23S rRNA methyltransferase [Fusobacterium sp. D11] gi|289717036|gb|EFD81048.1| 23S rRNA methyltransferase [Fusobacterium sp. D11] Length = 234 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 4/226 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G++ V+ AL N + I +L K + D + + ID G Sbjct: 4 IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKIDNSQGV 62 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + A + L+++LD + DP N GAI+RSA F D II +R Sbjct: 63 AVYISNYDYYKDFDEAYEELAGKAKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPER 122 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + + K+++GA+E++ +++NL+D + K+ + G + ++ +E + Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEEDYAN 182 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K+ L+LG EG G+R K +E + + M G I +LNVS A+ + L Sbjct: 183 KVILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|313665349|ref|YP_004047220.1| RNA methyltransferase, TrmH family [Mycoplasma leachii PG50] gi|312949359|gb|ADR23955.1| RNA methyltransferase, TrmH family [Mycoplasma leachii PG50] Length = 255 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 58/280 (20%), Positives = 108/280 (38%), Gaps = 29/280 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +IS + KI + +H ++ + + G H + A Sbjct: 1 MEVISSVSNPKIKEILKLKD-------------------RKHRNKQKLFIVEGFHMIMEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I LL T AL L + P+ V + KI Q A+ + P Sbjct: 42 --YNDQIIKTLLGTSKALEVLKDEI--PNIEQVIEISENVAKKISDTVTSQQIFAICSMP 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + +++LD + DP N+G ++RSA +F+ +I + + + +S Sbjct: 98 ENT----KIDFENNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRST 153 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGK 238 G L + + + Q + D KPL + +DK ALI+G EGK Sbjct: 154 QGNLFQVNLVNEYLVKVINQLHDNNYIIIGTSLHDDSKPLSKVKFDSDDKYALIIGNEGK 213 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 G+ P+ + ++ M + ++N + A ++ +Y N Sbjct: 214 GISPELLDLIDLNINIEMAENVDSINAAVAGSIIMYQINN 253 >gi|257087434|ref|ZP_05581795.1| 23S rRNA methyltransferase [Enterococcus faecalis D6] gi|257416641|ref|ZP_05593635.1| 23S rRNA methyltransferase [Enterococcus faecalis AR01/DG] gi|257419857|ref|ZP_05596851.1| rRNA methylase [Enterococcus faecalis T11] gi|257421954|ref|ZP_05598944.1| RNA methyltransferase [Enterococcus faecalis X98] gi|256995464|gb|EEU82766.1| 23S rRNA methyltransferase [Enterococcus faecalis D6] gi|257158469|gb|EEU88429.1| 23S rRNA methyltransferase [Enterococcus faecalis ARO1/DG] gi|257161685|gb|EEU91645.1| rRNA methylase [Enterococcus faecalis T11] gi|257163778|gb|EEU93738.1| RNA methyltransferase [Enterococcus faecalis X98] gi|315025411|gb|EFT37343.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX2137] gi|315155336|gb|EFT99352.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0043] gi|315173665|gb|EFU17682.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX1346] Length = 258 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 103/279 (36%), Gaps = 22/279 (7%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ ++ K ++ + + G H V A Sbjct: 1 MKEIISTKNNQLKEW-------------------KKLHKKKYREELNQYIIEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + L + W A + V + ++ + LA+ T Sbjct: 42 VKANADVQWILFNQRGQQEWRTWLAEQETE-KLIFVSDEVLNSLSELPTSQGILAIVTLE 100 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + LL+ D++ DP N+G ++R+A A G+I K + + + +S Sbjct: 101 TQQEQSLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P ++ +++ ++ + ALILG EG G+ Sbjct: 159 QGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSGV 218 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 P+ T ++ M G ++LNV+ AA V ++ +N+ Sbjct: 219 SPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|229815836|ref|ZP_04446160.1| hypothetical protein COLINT_02889 [Collinsella intestinalis DSM 13280] gi|229808531|gb|EEP44309.1| hypothetical protein COLINT_02889 [Collinsella intestinalis DSM 13280] Length = 308 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 13/269 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 A+ R + + Q+ + N + G AL I + L + Sbjct: 37 AQQRMPQASRTQQTAAPQRRDVHAAEGNY-IEGRRAAFEALRTG-FPIKRALIAQGVENE 94 Query: 81 LDWDANL----PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------R 130 L VK+VP +D I A HQG+ LE L + Sbjct: 95 PAIRDLLGGLGEAGVSVKSVPRTQLDAISSHGA-HQGIVLEVGKFPYADLSDIIAAAPAG 153 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + L++VLDHV D N GAI+RSA G++ + S + K+++GA+ H+P Sbjct: 154 SPALVVVLDHVTDAGNFGAIVRSAEVVGAAGVVIPNKRSAEVTVATYKTSAGAVMHLPIA 213 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ N+ AL+ + S GF G + ++ ++AL++G+EG G+ +T Sbjct: 214 QVPNIARALEDLKSAGFWVGGATEHAEDVCWDAPFEGRVALVMGSEGDGISRLVLDTCDF 273 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L G ++LNV+ AA + Sbjct: 274 TTKLPQRGETESLNVAQAATALCFEWMRR 302 >gi|146319366|ref|YP_001199078.1| rRNA methylase [Streptococcus suis 05ZYH33] gi|146321571|ref|YP_001201282.1| rRNA methylase [Streptococcus suis 98HAH33] gi|253752395|ref|YP_003025536.1| SpoU rRNA Methylase family protein [Streptococcus suis SC84] gi|253754221|ref|YP_003027362.1| SpoU rRNA Methylase family protein [Streptococcus suis P1/7] gi|253756155|ref|YP_003029295.1| SpoU rRNA Methylase family protein [Streptococcus suis BM407] gi|145690172|gb|ABP90678.1| rRNA methylase [Streptococcus suis 05ZYH33] gi|145692377|gb|ABP92882.1| rRNA methylase [Streptococcus suis 98HAH33] gi|251816684|emb|CAZ52325.1| SpoU rRNA Methylase family protein [Streptococcus suis SC84] gi|251818619|emb|CAZ56453.1| SpoU rRNA Methylase family protein [Streptococcus suis BM407] gi|251820467|emb|CAR47189.1| SpoU rRNA Methylase family protein [Streptococcus suis P1/7] gi|292558998|gb|ADE31999.1| rRNA methyltransferase [Streptococcus suis GZ1] gi|319758800|gb|ADV70742.1| rRNA methylase [Streptococcus suis JS14] Length = 246 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 98/230 (42%), Gaps = 10/230 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + + G H + A+ + I + + ++ AN V V P+ + ++ Sbjct: 24 RTSSYLIEGWHLLEEAMEAGAN-IEHIFVVEEYFEKVAGLAN------VTVVSPEIMQEL 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ + A + + L++ + V DP N+G ++R+A A DG+ Sbjct: 77 AD-SKTPQGVVAQLALPSQRLPETLDGKFLVL--EDVQDPGNVGTMIRTADAAGFDGVFL 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + + + + + +S G+ H+P R+ + + S ++ Sbjct: 134 SDKSADIYNMKVLRSMQGSHFHLPVYRMPISSILTALKSNQIQILATTLSSQSVDYKEIT 193 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + AL++G EG+G+ + A + H+ MPG ++LNV+ AA + L+ Sbjct: 194 PHSSFALVMGNEGQGISDLVADEADQLVHITMPGQAESLNVAIAAGILLF 243 >gi|37913005|gb|AAR05334.1| predicted tRNA/rRNA methyltransferase [uncultured marine alpha proteobacterium HOT2C01] Length = 257 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 76/252 (30%), Positives = 131/252 (51%), Gaps = 6/252 (2%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 M ++K Q + ++YG H V AL N +R +++ T A +L + L + Sbjct: 1 MSKRSKKLPKKRQNSDYWIYGHHAVVGALMNENRVKYEVYFTSEAEKKLKNEIKLENINV 60 Query: 93 VKTV-PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHN 146 + ID ++ + HQG+ + L +P L ++ +LD ++DP N Sbjct: 61 ISIKKTRDEIDLLLKGISNHQGICMRVEKLQTPKLSDFINNLNEERSIIFLLDQLDDPQN 120 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI RSA+AF+ DGII T S +E++ LAK+AS AL+ +P+I+I N++ ++ + G Sbjct: 121 VGAIFRSALAFNIDGIILTNTNSVTENSFLAKTASSALDKVPFIKIQNISSCIKILKDSG 180 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + GL +++ + + KI ILG+E KG+R T + M +++LNVS Sbjct: 181 YWIYGLDMKAERSITETTFPKKIVFILGSESKGMRKITDSLCDEGLKIKMSDNLESLNVS 240 Query: 267 NAAAVALYITQN 278 N AA+ ++ N Sbjct: 241 NTAAIIMFYVSN 252 >gi|258512133|ref|YP_003185567.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478859|gb|ACV59178.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 261 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 94/258 (36%), Gaps = 6/258 (2%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 + H D + + + R + + G V+ LN+P R L + Sbjct: 3 IESAHNDRVRAWARLKTRRGRERLGLFLVEGERLVAELLNSPLRLEALLWNVASDEPPDA 62 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + + PQ + E +A+ P P R ++VLD + Sbjct: 63 LWRHPKADGRRYELSPQAFAAVADTETPQGLMAVAAIPRAEP-----RYGPRVLVLDAIQ 117 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N G ++RSA AF I+ + + + +++ G L + I Sbjct: 118 DPGNAGTLVRSAEAFGFGEILFGTGTADPYAPKVVRASMGGLFRVHAIAGDAEAYLRAWR 177 Query: 203 HSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + ++D+ + ++ ++A+++G E +G+ ++ A + M G + Sbjct: 178 DRHPDGVIVATAADASERCDEAPMAGEVAVVIGNEARGVSDAVRQLAQRCVAIPMAGKAE 237 Query: 262 ALNVSNAAAVALYITQNH 279 +LN + A + LY Sbjct: 238 SLNAAMAGTILLYEAYRQ 255 >gi|313887237|ref|ZP_07820932.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas asaccharolytica PR426713P-I] gi|312923328|gb|EFR34142.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas asaccharolytica PR426713P-I] Length = 247 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 13/242 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106 +YG+H ++ +L + S I ++ K A+ + PV VP + +++ Sbjct: 6 LIYGIHALNESLASHSD-IDKIYMKKGAVTGELLEIKRTARTQGVPVMEVPAERLNRFT- 63 Query: 107 KEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ +P+ L+ +++LD V D N GAI R+ Sbjct: 64 -RGAHQGVVALISPITYTRLESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCECAGV 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 I+ +R S S +A +++GAL I R +L A + + G Q +G D+ Sbjct: 123 HAIVIPERDSVSVTADAVNASAGALMRISVCRERDLVTACRFLRDSGLQLVGADVDATTN 182 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +++G+E KG+ + T + G I +LNVS A + LY Sbjct: 183 YTSLPMTPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEVVRQ 242 Query: 280 FA 281 Sbjct: 243 HN 244 >gi|91205880|ref|YP_538235.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C] gi|157826761|ref|YP_001495825.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389] gi|91069424|gb|ABE05146.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C] gi|157802065|gb|ABV78788.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389] Length = 241 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 75/238 (31%), Positives = 122/238 (51%), Gaps = 5/238 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ D + L P K V Sbjct: 2 QNKKLDSKNYYYIYGKHPVFSALNNPKRQIEDILCTQ---MIFDANKKLISSKPYKIVNN 58 Query: 99 QTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K++ + ++ + +LD + DP NIGAI+RSA A Sbjct: 59 DVLSKLLENQTHQGIAAKVKPIFSHNIEDINIKNPKCKIAILDQITDPQNIGAIIRSAAA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F+ D II SP+E+ +AK+A G LE I I+++NL + + GF IGL+ ++ Sbjct: 119 FNIDAIILPLDNSPNENGTIAKAACGTLELIKIIKVTNLNSCINYLKKHGFWVIGLTGEA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ +DKIALI G+E KG+R QE +A + + +++LNVSNAA++ + Sbjct: 179 NDYFTDKLISDKIALIFGSEDKGMRRLVQENCDYLAKIPISDKVESLNVSNAASIIFH 236 >gi|253580061|ref|ZP_04857328.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848580|gb|EES76543.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 272 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 91/242 (37%), Gaps = 7/242 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + +P + ALN + I L+ K+ PV T + + Sbjct: 28 YEPEPGIFIAESPKVIERALNAGYQPISFLVEHKDLEGEAQEILKQYPDVPVYTAEYELL 87 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K+ G L L + RN+ + VL++V +P NIGAI RSA A D Sbjct: 88 VKLTGFALTRGMLCAMRRNSLPSVEEICRNASRIAVLENVVNPTNIGAIFRSAAALHMDA 147 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ T S A+ + G + IP+ T Q ++ + Sbjct: 148 VLLTGGCSDPLYRRAARVSMGTVFQIPWTYFDKKTVWPQDGMQILQNLGFKTAAMALRDD 207 Query: 222 QEIKNDK-------IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +DK +A+ILG EG GL +T + M + +LNV+ A+AVA + Sbjct: 208 SVGIDDKALRSEEKLAVILGTEGDGLASQTIADCDYTVKIPMSHGVDSLNVAAASAVAFW 267 Query: 275 IT 276 Sbjct: 268 EL 269 >gi|326566884|gb|EGE17023.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 103P14B1] gi|326575114|gb|EGE25042.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis CO72] gi|326576800|gb|EGE26707.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 101P30B1] Length = 258 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 92/257 (35%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K + R + + GVH V A L + +++ +++A A + Sbjct: 5 SKDNPIIKHTHALLGHHRTRKKSRQTVIEGVHLVEAYLKQTP-AVHRIIVSESATAHDEV 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 L P + + + + +L + L++ D + D Sbjct: 64 LPLLSQIDPKQITIISDTLYQQIRTLGDSVSVMAVIDIPHRSLPTISGDCLIL--DGLQD 121 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 NIG +LR+A A +IT+ + S ++ GA + I + + Sbjct: 122 LGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAH---FSMSIYEHIAVDEILQ 178 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 SS + K + IA +LG EG+G+R + A L PG ++L Sbjct: 179 KLKTPLYATSSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNA-IPIALPQPGGQESL 237 Query: 264 NVSNAAAVALYITQNHF 280 NV A +V Y Sbjct: 238 NVGIAGSVCFYEMLRQR 254 >gi|227892813|ref|ZP_04010618.1| RNA methyltransferase [Lactobacillus ultunensis DSM 16047] gi|227865454|gb|EEJ72875.1| RNA methyltransferase [Lactobacillus ultunensis DSM 16047] Length = 255 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 87/237 (36%), Gaps = 5/237 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQT 100 + + + + G H A+ + + LL T+ AL + + D ++ V + Sbjct: 23 YRDEENSYLIEGFHLFDEAIKAGKKYQY-LLGTEEALDKAESDYDVDLSGKNVILINKAI 81 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + + + + LL D++ DP N+G I+R+A A D Sbjct: 82 ARHLSSTKNSQEIFMVLKIDQPKEFPFNYGKWVLL---DNLADPGNVGTIIRTADAAGFD 138 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ + + + ++ G+ HI I+ + K L Sbjct: 139 GVVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLADVITDFQDVAIPVYASMLDKKAKQL 198 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + K ++ALI+G E G+ ++ + G ++LN + AA + +Y Sbjct: 199 QDFAKVPQLALIIGNEAHGVSSTIASLCDEKLYIPIKGKAESLNAAVAAGIMIYHFA 255 >gi|296112629|ref|YP_003626567.1| tRNA/rRNA methyltransferase SpoU [Moraxella catarrhalis RH4] gi|295920323|gb|ADG60674.1| tRNA/rRNA methyltransferase SpoU [Moraxella catarrhalis RH4] Length = 258 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 92/257 (35%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K + R + + GVH V A L + +L+ +++A + Sbjct: 5 SKDNPIIKHTHALLGHHRTRKKSRQTVIEGVHLVEAYLKQMP-AVHRLIVSESATVHDEV 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 L P + + + + +L + + L++ D + D Sbjct: 64 LPLLSQIDPKQITIISDTLYQQIRTLGDSVSVMAVIDIPHRSLPTISSDCLIL--DGLQD 121 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 NIG +LR+A A +IT+ + S ++ GA + I + + Sbjct: 122 LGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHF---SMSIYEHIAVNEILQ 178 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 SS + K + IA +LG EG+G+R + A L PG ++L Sbjct: 179 KLKTPLYATSSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNA-IPIALPQPGGQESL 237 Query: 264 NVSNAAAVALYITQNHF 280 NV A +V Y Sbjct: 238 NVGIAGSVCFYEMLRQR 254 >gi|300781270|ref|ZP_07091124.1| TrmH family rRNA methyltransferase [Corynebacterium genitalium ATCC 33030] gi|300532977|gb|EFK54038.1| TrmH family rRNA methyltransferase [Corynebacterium genitalium ATCC 33030] Length = 269 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 92/255 (36%), Gaps = 7/255 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 N ++ + G ++V AA+ + L T+ A R Sbjct: 14 PRVVNAAKLN-RAAGRKKAGRFLAEGENSVEAAVATGAATD--LFVTEAAADRFYDVVTT 70 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPH 145 V T + VH ++ TL + +L+ V NDP Sbjct: 71 AAYMDVFTHAITDKAAQSLTDTVHTTGVFAVCKPVTWTLGSVLTGRPKLVAVCVGTNDPG 130 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G I+R A D +I ES + +S++G+L H+P R ++ A+ ++ + Sbjct: 131 NAGTIIRLVDALGADAVIFAGDTVDPESPKVVRSSAGSLFHVPVARERDVNGAIGQLRAA 190 Query: 206 GFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + + + + A + G E GL A + + G ++L Sbjct: 191 GLKLAATTMGGEVSLDDPGNALDQPTAWLFGNEAHGLPDDVLAAADYRVSIPIKGSAESL 250 Query: 264 NVSNAAAVALYITQN 278 N+S AA++ L+ + Sbjct: 251 NLSTAASICLWESAK 265 >gi|295693354|ref|YP_003601964.1| rRNA methylase [Lactobacillus crispatus ST1] gi|295031460|emb|CBL50939.1| rRNA methylase [Lactobacillus crispatus ST1] Length = 255 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 79/236 (33%), Gaps = 3/236 (1%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + G H AL + + L + V + Sbjct: 23 YRDDEGLYLIEGFHLFEEALKAGKKYQYILGTKEALDQADSNYEVDLSGKNVLLINKAIA 82 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + + + LL D++ DP N+G I+R+A A DG Sbjct: 83 RHLSSTKNSQEIFMVLKIDQPKEFPFNYGKWVLL---DNLADPGNVGTIIRTADAAGFDG 139 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + + ++ G+ HI I+ + + S K L Sbjct: 140 VILSPESADLYNPKTQRAMQGSQFHIDLIKRDLADVITDFQAAAIPVYASMLDRSAKQLP 199 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K ++ALI+G E G+ P A ++ + G ++LN + AA + +Y Sbjct: 200 DFEKVPQLALIIGNEAHGVSPTIASLADEKLYIPIKGQAESLNAAVAAGIMIYHFA 255 >gi|323351009|ref|ZP_08086666.1| SpoU rRNA methylase [Streptococcus sanguinis VMC66] gi|322122733|gb|EFX94442.1| SpoU rRNA methylase [Streptococcus sanguinis VMC66] Length = 246 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + K H+ K R++ + + G H A Sbjct: 1 MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +++ I ++ A RL + V V P+ + + + +A Sbjct: 40 VSSGEELI-RIFALAEYAERLADFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 92 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L+ V DP N+G I+R+A A DG+ + + + +S Sbjct: 93 REEIPAELSGRY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R+ S S + + + + L++G EG+G+ Sbjct: 150 QGSHFHLPVYRMDTSDFIRLARSSSLPILASTLSSTSIDYREVVSKESFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P+ A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPEMTVAADILVHISMKGQAESLNVAVAAGILIFHL 245 >gi|329912122|ref|ZP_08275682.1| RNA methyltransferase [Oxalobacteraceae bacterium IMCC9480] gi|327545704|gb|EGF30848.1| RNA methyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 262 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 47/260 (18%), Positives = 100/260 (38%), Gaps = 7/260 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-- 81 R++ YK+++ S+ + L GVH A L + +++ + + Sbjct: 6 SRDNPLYKELKQLATSSQARRKAGRTLLDGVHLCEAYLQHLGMPQLCVVSQSATINQEVV 65 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 V P + + + + GL + V + ++LD++ Sbjct: 66 PLLLQCEAGRTQCIVLPDALYQAISQVEHGVGLMFVVET--PQLVMPVALAGSAVLLDNL 123 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G+ILRSA A + + + + + S + ++ GA + +L + Sbjct: 124 QDPGNMGSILRSAAAAGIEYVFCSPGTAFAWSPKVLRAGMGAHFLLKIFENVDL---AEV 180 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + + SS + + +A + G EG+G+ + AT + G ++ Sbjct: 181 VRNASVPVLATSSHVAQRVYDIDLTQPVAWLFGHEGQGVEEQLLALATHQVAIPHIGAME 240 Query: 262 ALNVSNAAAVALYITQNHFA 281 +LNV+ AAV + + Sbjct: 241 SLNVAACAAVCFFEQVRQRS 260 >gi|197941205|gb|ACH78322.1| putative tRNA methyltransferase [Streptococcus equi subsp. zooepidemicus] Length = 240 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 10/242 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 K++ ++ + +YGVH V+ L N K++ + D + Sbjct: 2 KAKEINETK-DIVYGVHAVTESLLANTGNKLYIQEDLRGKHVDHIKDLATSKKVSISWTK 60 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAIL 151 + + ++ AVHQG L + LD ++ LL++LD + DPHN G+IL Sbjct: 61 KKALTEMTA-GAVHQGFVLRVSAFAYTELDELLELAQQEDNPLLLILDGLTDPHNFGSIL 119 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A G+I K + + V+AK+++GA+EH+P R++NL+ AL ++ + GF G Sbjct: 120 RTADATGVCGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFG 179 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + K+ALI+G EGKG+ ++ M + M G +++LN S AAA+ Sbjct: 180 TDVTGTPSYKWNT-SGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAI 238 Query: 272 AL 273 + Sbjct: 239 LM 240 >gi|269795465|ref|YP_003314920.1| rRNA methylase [Sanguibacter keddieii DSM 10542] gi|269097650|gb|ACZ22086.1| rRNA methylase [Sanguibacter keddieii DSM 10542] Length = 271 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 97/257 (37%), Gaps = 9/257 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + +S+H + + + AL R + + + Sbjct: 16 DYTNLTDIVLRSKHEPEKGLFIAESSNVIRRALAAGLRP-RSFFMAEKWVESMADVVEQW 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVN 142 PV P+ ++ I G LA P+ + ++ + + + V Sbjct: 75 PDVPVFVGEPKLLEDITGFHLHRGALAAMHRPVEPSVAELLAGARGGEGARRVAIFEDVV 134 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+GA RSA A D ++ T R S + + G + +P+ RI + + Sbjct: 135 DHTNLGAAFRSAAALGVDAVLVTPRCSDPLYRRSVRVSMGTVFQVPWTRIPWPSGIGELQ 194 Query: 203 HSWGFQTIGLSSDSKK--PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + SD E KN+K A I G EG GL +T E S+ + M G + Sbjct: 195 AAGFTVAALALSDDSVTLDEFVEQKNEKTAFIFGTEGHGLAQETLEAVDSVVKIPMAGGV 254 Query: 261 KALNVSNAAAVALYITQ 277 +LNV+ +AAV Y T+ Sbjct: 255 DSLNVAASAAVVFYATR 271 >gi|148273189|ref|YP_001222750.1| putative rRNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831119|emb|CAN02071.1| putaive rRNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 266 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 101/263 (38%), Gaps = 10/263 (3%) Query: 26 NHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++ +++ + K + L G VS AL + +L AT AL R Sbjct: 3 DNPRSPRVRGVAKLAKRDARADTGLFLLEGPQAVSEALAFRPDLVLELFATPTALDRYPD 62 Query: 84 DAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 A V+ V I + + + S + +L+ +L+ V Sbjct: 63 LARAVREAGVEVEFVTEDVIASMADTVTPQGVVGVCRQFPTSLKQILGDDPRLIAILEEV 122 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N G I+R+A A D +I T R + + ++ +G+L H+P + L L++ Sbjct: 123 RDPGNAGTIIRAADAAGADAVILTGRSVDLYNPKVVRATTGSLFHLPVAIMPELDAVLER 182 Query: 202 MHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + + G Q + A + G E +GL+ + A + + G Sbjct: 183 VKAAGLQVLAADVKGDDLLAERTSGGLAWPTAWLFGNEARGLQDEHLALADRAVVVPIYG 242 Query: 259 IIKALNVSNAAAVALYI---TQN 278 +++N++ AA+V LY Q Sbjct: 243 QAESMNLATAASVCLYESAFAQR 265 >gi|50954374|ref|YP_061662.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950856|gb|AAT88557.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 277 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 103/263 (39%), Gaps = 10/263 (3%) Query: 26 NHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++ ++++ + K S+ L G V+ AL S + +L AT AL R Sbjct: 12 DNPRSPRVRAVAKLTKRTARSETGLFLLEGPQAVAEALAFRSELLVELYATPTALERHQD 71 Query: 84 DANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 A V+ V Q + I +A+ S + L+ +L+ V Sbjct: 72 IAQAAAAAGTQVEFVTEQVLGTIADTVTPQGFVAVARQFPTSVREIFAGSPALVAILEEV 131 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N G I+R+A + D ++ T R + + +S +G+L HIP ++L + + Sbjct: 132 RDPGNAGTIIRAADSAGADAVVLTGRTVDLYNPKVVRSTTGSLFHIPVAVGADLPEVVSC 191 Query: 202 MHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + G + + + A + G E +GL + + + G Sbjct: 192 ARAAGLRVLAADIAGEDLLAARTAGQLARPTAWVFGNEARGLPDEWLGLVDRAVAVPIYG 251 Query: 259 IIKALNVSNAAAVALYI---TQN 278 +++N++ AA+V LY Q Sbjct: 252 RAESMNLATAASVCLYESAFAQR 274 >gi|227510713|ref|ZP_03940762.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189834|gb|EEI69901.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 255 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 72/249 (28%), Positives = 117/249 (46%), Gaps = 15/249 (6%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLAT-----KNALARLDWDANLPHPFPVKTVPP 98 Q F+ G H V AAL + S I +L + + VP Sbjct: 4 DQENEEFVMGRHPVVAALKSDS-PINKLFIQTGIKKDENIISEILKLARKKRLVISEVPK 62 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAIL 151 Q +D++ HQG+ L A T+D ++LD++ DPHN+G+I+ Sbjct: 63 QKLDRLS-VGQNHQGVVLSVAAFEYATVDDLFVNAKKQETEPFFVILDNIEDPHNLGSII 121 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A GII K + +AV+AK+++GA+E +P R++NL ++++ S G G Sbjct: 122 RTADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARVTNLAATIKELKSRGMWVFG 181 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + K +A+I+G EGKG+ P ++ M + M G I++LN S AA+V Sbjct: 182 TDIEGTDYRRWDAK-GSVAIIIGNEGKGISPLLKKQVDEMLTIPMVGDIQSLNASVAASV 240 Query: 272 ALYITQNHF 280 +Y N Sbjct: 241 LIYQGFNSR 249 >gi|158321000|ref|YP_001513507.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus oremlandii OhILAs] gi|158141199|gb|ABW19511.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus oremlandii OhILAs] Length = 278 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 91/256 (35%), Gaps = 7/256 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDW 83 + K ++S K ++ + + G+ V + + + + A Sbjct: 11 NSIIKYVKSLQLK-KNRMKHMQFTVEGLRIVEECVKHNGDIAYIIYSEEIYSTQGAEKLL 69 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHV 141 D + + V Q KI E + L ++LD + Sbjct: 70 DKIALAGYTLYEVSSQLFSKISTTENPQGIMAVVHMKNRSLEEIKSQKGKELFFVILDRI 129 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+A + + D +I TK ++ ++ GA+ H I + L Sbjct: 130 QDPGNMGTIIRTAESANADAVIITKGSVDPYNSKTLRATMGAIFH-MPIIQCDDDRWLDD 188 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + I D+ K N I +I+G E G+ + + G I+ Sbjct: 189 LKENEVKLIAADLDTDKTYIDIDYNTSIGIIIGNEANGISEALLSKVDQRVIIPILGKIE 248 Query: 262 ALNVSNAAAVALYITQ 277 +LN S AA++ +Y Sbjct: 249 SLNASVAASILIYKAA 264 >gi|227891225|ref|ZP_04009030.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius ATCC 11741] gi|227867099|gb|EEJ74520.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius ATCC 11741] Length = 248 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 116/241 (48%), Gaps = 12/241 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQT 100 + + F+ G H AAL I ++ + A + V VP Sbjct: 2 KEEQKNFIIGRHPAMAALKKKDSNINKVFVQEGLKADAIQEIYTLAKARKLVVSRVPKTK 61 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRS 153 +D +V + HQG+ + A T+D ++LD + DPHN+G+I+R+ Sbjct: 62 LDNLVNGQ-NHQGVVIAIASYSYATIDDLFEKARSKNEDPFFLILDGIEDPHNLGSIMRT 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A GII KR + ++V+AK+++GA+EH+P +R++NL ++++ G G Sbjct: 121 ADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVVRVTNLVQTVKELKEQGVWIFGTD 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + K AL++G EGKG+ P ++T M + M G +++LN S AA++ + Sbjct: 181 MKGTDFRKWSAK-GATALVIGNEGKGISPLLKKTCDEMLTIPMVGHVQSLNASVAASLLI 239 Query: 274 Y 274 Y Sbjct: 240 Y 240 >gi|289551058|ref|YP_003471962.1| SpoU rRNA Methylase family protein [Staphylococcus lugdunensis HKU09-01] gi|289180590|gb|ADC87835.1| SpoU rRNA Methylase family protein [Staphylococcus lugdunensis HKU09-01] Length = 246 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 98/277 (35%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ KI + +K R + + G+H + A Sbjct: 1 MEQITSAQNSKIKNANKL-------------------KKKRERDKTGQALIEGIHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + D + + + + + G QG Sbjct: 42 YQSNLTIKQLFIIEPERTEQALIDYSEET----FQINMKVAEALSGTI-TPQGFFAVIEK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 A + ++++D + DP N+G ++RSA A D I+ K + + + +++ Sbjct: 97 PNYDVTHAKQ----VLLIDRIQDPGNLGTLIRSADAAGIDLIVMEKGTADAYQDKVLRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ HIP + Q + + K QE AL+LG EG G+ Sbjct: 153 QGSVFHIPVVTADLQGFIKQFEGPVFGTALENAVSYKNLEPQETF----ALLLGNEGDGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 E T + + G ++LNV+ A ++ LY + Sbjct: 209 NNALLEHTTKNLIIPIYGKAESLNVAIAGSILLYHLK 245 >gi|283458739|ref|YP_003363377.1| rRNA methylase [Rothia mucilaginosa DY-18] gi|283134792|dbj|BAI65557.1| rRNA methylase [Rothia mucilaginosa DY-18] Length = 328 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 69/294 (23%), Positives = 122/294 (41%), Gaps = 20/294 (6%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ ++ K R Q + + + G + V AL Sbjct: 35 TPKAEDRVYH--KAYKMKRAAERRAATGTNRKFQTRLGGKRASDELVTGRNAVLEALRTE 92 Query: 65 SRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 + ++ + R P+ +P +D++ +VHQG+A++ P Sbjct: 93 IPSKHLYIMSRVEVDDRVREIMTIANKRNIPMLEIPRSELDRLTD-GSVHQGVAMQIPPY 151 Query: 122 LSPT-----LDAVRNSQ--------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 P LD + L + LD + DP N+GAI+RS AFS DG+I +R Sbjct: 152 KYPDATDLVLDTMERWHSGKLSTPPLFVALDGITDPRNLGAIIRSVSAFSGDGVIIPERR 211 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-ND 227 S + +A K+++GA IP +NLT +Q+ G IGL L N+ Sbjct: 212 SAAVTAGAWKTSAGAAARIPVAMATNLTRVIQQAKEQGIFVIGLDGGGDIELPALELANE 271 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +++G+EGKGL E + + + +++LN + A + LY A Sbjct: 272 PLCVVVGSEGKGLSRLVTENCDQIVSIPIDSAMESLNAAMAVGITLYDVSRRRA 325 >gi|110004177|emb|CAK98515.1| putative trna/rrna methyltransferase protein [Spiroplasma citri] Length = 244 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 7/239 (2%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 E +++YG++ V +L NP+ KI +L + V + + Sbjct: 2 QEYIYIYGINPVVESLLNPAVKINKLYLLPQGKNNDYYLKLAKSRQLKVVFCSAVEMTTL 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 V + P L+VLD ++DPHN GAILR+ F+ Sbjct: 62 VQTSKHQSLILEICKPQNYSLASITTKALQNKHPFLLVLDQISDPHNFGAILRTCDLFNV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKK 218 DG+I + +A +AK+++GA ++P R++NLT+A++ + + + Sbjct: 122 DGVIILDKRQVDINATVAKTSAGAFNYVPVCRVNNLTNAIEYLKKQGFWIYATSLNTKAQ 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + I LI+G EG G+ K + A ++ G + +LNVS A+A+ +Y + Sbjct: 182 NVSELKYDIPICLIVGNEGTGISAKLLKHADFNIYIPTAGHLDSLNVSVASAILIYQIK 240 >gi|332800099|ref|YP_004461598.1| TrmH family RNA methyltransferase [Tepidanaerobacter sp. Re1] gi|332697834|gb|AEE92291.1| RNA methyltransferase, TrmH family, group 3 [Tepidanaerobacter sp. Re1] Length = 250 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 103/241 (42%), Gaps = 13/241 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + G ++V AL R I ++ K R + P+ + + Sbjct: 6 IEGRNSVWEALQAG-RPINKIYIKKGEYHGLIRDIIEKARNTGVPISEIDEAAFLSMAKT 64 Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ + A +++ + +++L+ + DP N+G+I+R+A Sbjct: 65 AG-HQGILAKVASKDYYSVEDILKTARDLDEDPFILILNELTDPQNLGSIIRTADGMGAH 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K + + +AK +SGA+E++ R++N+ + ++ G IG ++ K Sbjct: 124 GIIIPKNRACGITPTVAKISSGAVEYVKVARVTNIARTIDELKKEGLWIIGADAEGKNYF 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + IAL++G E KGL ++ + + + G I +LN + AA++ Y Sbjct: 184 -EVDLTGSIALVIGGEDKGLGKLVKQKCDILVRIPLRGRITSLNAAVAASILGYDILRQR 242 Query: 281 A 281 Sbjct: 243 I 243 >gi|315038839|ref|YP_004032407.1| rRNA methylase [Lactobacillus amylovorus GRL 1112] gi|325957278|ref|YP_004292690.1| rRNA methylase [Lactobacillus acidophilus 30SC] gi|312276972|gb|ADQ59612.1| rRNA methylase [Lactobacillus amylovorus GRL 1112] gi|325333843|gb|ADZ07751.1| rRNA methylase [Lactobacillus acidophilus 30SC] gi|327184008|gb|AEA32455.1| rRNA methylase [Lactobacillus amylovorus GRL 1118] Length = 255 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 89/236 (37%), Gaps = 5/236 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQT 100 + + + G H A+ + + L T+ AL +++ D ++ V + Sbjct: 23 YRDEENRYLIEGFHLFEEAVKAGKKYQYVL-GTEEALDQVNEDYDIDLDGKNVILINKAI 81 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + + + + LL D++ DP N+G I+R+A A D Sbjct: 82 ARHLSSTKNSQEIFMVLKIDQPKEFPFNYGKWVLL---DNLADPGNVGTIIRTADAAGFD 138 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ + + + ++ G+ HI I+ S + S K L Sbjct: 139 GVVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLADVITDFQDSAIPVYASMLDKSAKQL 198 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + K ++ALI+G E G+ + ++ + G ++LN + AA + +Y Sbjct: 199 QDFEKVPQLALIIGNEAHGVSETIASLSDEKLYIPIKGKAESLNAAVAAGIMIYHF 254 >gi|307084225|ref|ZP_07493338.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu012] gi|308366170|gb|EFP55021.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu012] Length = 256 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 100/265 (37%), Gaps = 16/265 (6%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 + + A + HR + G + V+AAL + ++ T+ Sbjct: 5 RSARVATAVKLHRHV-----------GRRRAGRFLAEGPNLVAAALARG--LVREVFVTE 51 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 A R + H V V + + +A+ P + QL+ Sbjct: 52 VAARRHELLLA-AHEASVHLVTERAAKALSDTVTPAGLVAVCDLPATRLEDVLAGSPQLI 110 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 V + +P N G ++R A A +I R + ++++G++ IP + ++ Sbjct: 111 AVTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPYNGKCLRASTGSIFAIPVVVAPDV 170 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAH 253 A+ + + G Q + + D + L+ + A + G E GL + A H Sbjct: 171 GAAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAHGLSAEIAALADHRVH 230 Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278 + M G ++LNV+ AAA+ LY + Sbjct: 231 ILMSGGAESLNVAAAAAICLYESAR 255 >gi|291166497|gb|EFE28543.1| RNA methyltransferase, TrmH family [Filifactor alocis ATCC 35896] Length = 266 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 88/257 (34%), Gaps = 7/257 (2%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 N+ +K S N K + + + G V A + I + + + + D Sbjct: 8 FSHNNAMFKLALSLN-KQKFRKKHSLFLIEGTRAVLQA-KENNITIKYIFVSDDFRKKRD 65 Query: 83 W---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 + N + K+ A + + P + +++LD Sbjct: 66 DVWNEINCSMITEKYILDDNLFSKLSDTVASQGVIGMCEIPKYDAKSILSKEKSFILLLD 125 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N G I+R+++A+ D I TK S S + +++ G + I Sbjct: 126 QIQDPGNFGTIIRTSLAYGIDAIFFTKGSVDSFSPKVTRASMGGN--LCLPLIEAEDGID 183 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 S+ K+ALILG EG G+ T+ + + Sbjct: 184 YFKKFRYTVYSASLSEKSVSYRDVNFESKVALILGNEGNGISADILNTSDYQIIIPIKEG 243 Query: 260 IKALNVSNAAAVALYIT 276 +++LNV AA + + Sbjct: 244 MESLNVGVAAGILINEI 260 >gi|326563875|gb|EGE14126.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 46P47B1] gi|326566546|gb|EGE16692.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 12P80B1] gi|326571607|gb|EGE21622.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7] Length = 258 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 92/257 (35%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K + R + + GVH V A L + +L+ +++A A + Sbjct: 5 SKDNPIIKHTHALLGHHRTRKKSRQTVIEGVHLVEAYLKQTP-AVHRLIVSESATAHDEV 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 L P + + + + +L + L++ D + D Sbjct: 64 LPLLSQIDPKQITIISDTLYQQIRTLGDSVSVMAVIDIPHRSLPTIGGDCLIL--DGLQD 121 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 NIG +LR+A A +IT+ + S ++ GA + I + + Sbjct: 122 LGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHF---SMSIYEHIAVDEILQ 178 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 SS + K + IA +LG EG+G+R + A L PG ++L Sbjct: 179 KLKTPLYATSSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNA-IPIALPQPGGQESL 237 Query: 264 NVSNAAAVALYITQNHF 280 NV A +V Y Sbjct: 238 NVGIAGSVCFYEMLRQR 254 >gi|282854556|ref|ZP_06263891.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139] gi|289427763|ref|ZP_06429474.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] gi|295130948|ref|YP_003581611.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137] gi|282582138|gb|EFB87520.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139] gi|289159027|gb|EFD07220.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] gi|291375145|gb|ADD98999.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137] Length = 271 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + + G V AL P K+ L + A + V + + ++ Sbjct: 33 DESGLFLVEGAQAVREALAWPG-KVNLLATSDPARDAEHVEVATCRGVRVVVLTDEDVNA 91 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + A+ D +L ++ V DP N G ++R A AF D +I Sbjct: 92 LSDTVTSQGIFAVCRQVTRRELPD--EAVRLAVICAQVRDPGNAGTVIRCADAFGADCVI 149 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 T+ + +S+ G++ H+P + L DA++ H + Sbjct: 150 LTRGSVDPHNPKTVRSSVGSIFHLPVVVGVELADAVEWAHQHQMSVLAADGGGHSLDVVA 209 Query: 224 ---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-H 279 IA ++G E GL + A + + M G ++LN+S AAAV LY T + Sbjct: 210 RSGCLKRPIAWLMGNEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLYATASEQ 269 Query: 280 FA 281 A Sbjct: 270 RA 271 >gi|50842892|ref|YP_056119.1| putative rRNA methylase [Propionibacterium acnes KPA171202] gi|289426403|ref|ZP_06428146.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187] gi|50840494|gb|AAT83161.1| putative rRNA methylase [Propionibacterium acnes KPA171202] gi|289153131|gb|EFD01849.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187] gi|313808089|gb|EFS46566.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL087PA2] gi|313813590|gb|EFS51304.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL025PA1] gi|313819728|gb|EFS57442.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL046PA2] gi|313823743|gb|EFS61457.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL036PA2] gi|313829638|gb|EFS67352.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL063PA2] gi|313840042|gb|EFS77756.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL086PA1] gi|314919433|gb|EFS83264.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL050PA1] gi|314923955|gb|EFS87786.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL001PA1] gi|314954516|gb|EFS98922.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL027PA1] gi|314962173|gb|EFT06274.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL002PA2] gi|314963802|gb|EFT07902.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL082PA1] gi|314976761|gb|EFT20856.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL045PA1] gi|314984483|gb|EFT28575.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL005PA1] gi|314986660|gb|EFT30752.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL005PA2] gi|314990775|gb|EFT34866.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL005PA3] gi|315079654|gb|EFT51644.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL053PA2] gi|315100540|gb|EFT72516.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL046PA1] gi|327327988|gb|EGE69757.1| putative 23S rRNA methyltransferase [Propionibacterium acnes HL103PA1] gi|327329586|gb|EGE71344.1| putative 23S rRNA methyltransferase [Propionibacterium acnes HL096PA2] gi|327444366|gb|EGE91020.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL043PA2] gi|327452174|gb|EGE98828.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL092PA1] gi|327452807|gb|EGE99461.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL087PA3] gi|327457884|gb|EGF04539.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL083PA2] gi|328755365|gb|EGF68981.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL087PA1] gi|328760149|gb|EGF73726.1| putative 23S rRNA methyltransferase [Propionibacterium acnes HL099PA1] gi|332675828|gb|AEE72644.1| tRNA/rRNA methyltransferase YsgA [Propionibacterium acnes 266] Length = 273 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + + G V AL P K+ L + A + V + + ++ Sbjct: 35 DESGLFLVEGAQAVREALAWPG-KVNLLATSDPARDAEHVEVATCRGVRVVVLTDEDVNA 93 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + A+ D +L ++ V DP N G ++R A AF D +I Sbjct: 94 LSDTVTSQGIFAVCRQVTRRELPD--EAVRLAVICAQVRDPGNAGTVIRCADAFGADCVI 151 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 T+ + +S+ G++ H+P + L DA++ H + Sbjct: 152 LTRGSVDPHNPKTVRSSVGSIFHLPVVVGVELADAVEWAHQHQMSVLAADGGGHSLDVVA 211 Query: 224 ---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-H 279 IA ++G E GL + A + + M G ++LN+S AAAV LY T + Sbjct: 212 RSGCLKRPIAWLMGNEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLYATASEQ 271 Query: 280 FA 281 A Sbjct: 272 RA 273 >gi|86132534|ref|ZP_01051127.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|85816776|gb|EAQ37961.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 244 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 98/239 (41%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++G + A+ K+F N+L + VP + ++K+ + Sbjct: 7 IHGTRAIIEAIEAGKEVDKVFLQKGLHNSLLSELNTLIKKNGIQTSFVPIEKLNKLT--Q 64 Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG +P+ + + L ++LD ++D N GAI+R+A G Sbjct: 65 LNHQGAVATISPVKYHDFEELVNRTVESGETPLFILLDQLSDVRNFGAIIRTAECTGAHG 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K+ + V K+++GA +P ++ ++ DA+ + G Q + + + L Sbjct: 125 VIIPKKGGAPLNGVAVKTSAGAAFSMPIAKVDHIKDAIYYLQGSGIQVVAATEKTDNTLY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A+++G E G+ P + A L + G I +LNVS A LY Sbjct: 185 DVDFKEPTAIVMGREDSGVSPGVLKIVDHQAKLPLKGSIASLNVSVACGAFLYEAVRQR 243 >gi|261416042|ref|YP_003249725.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372498|gb|ACX75243.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327067|gb|ADL26268.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 415 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 89/253 (35%), Gaps = 5/253 (1%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 +K++ + + + GVH V + + + + + +A Sbjct: 160 PWFKRLIACTT-EKGREREGKFLGEGVHVVEELVKHHRELVISVYVVEGFENEELIEAIN 218 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + T+ + ++ +A P + R+ L+ D V DP N+ Sbjct: 219 EAEITLHTLTEDQMKRLSSTMTTQGIIAYCNIASKKPVYETSRSVLTLV--DAVQDPGNL 276 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSW 205 G + R+++ F+ G+I + + + + +SG +P+ + + + Sbjct: 277 GTLFRTSLGFNSSGMILGRGTVSPFNPKVVRGSSGTFLRVPFEFDVDLVDQINFLRSKGY 336 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 L + K K+A ++G EG G P E A + M +++LNV Sbjct: 337 TIIATDLHAKQSLREIPAHKLRKMAFLVGNEGAGTNPYFIELADETVKIPMSSELESLNV 396 Query: 266 SNAAAVALYITQN 278 + A + Y Sbjct: 397 AVAHGILSYEAAQ 409 >gi|227522455|ref|ZP_03952504.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227090407|gb|EEI25719.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus hilgardii ATCC 8290] Length = 255 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 70/248 (28%), Positives = 117/248 (47%), Gaps = 13/248 (5%) Query: 44 SQPENLFLYGVHTVSAALNN--PSRKIFQL--LATKNALARLDWDANLPHPFPVKTVPPQ 99 Q F+ G H V AAL + P K+F + + + VP Q Sbjct: 4 DQENEEFVMGRHPVVAALKSDSPVNKVFIQTGIKKDENIISEILKLARKKRLVISEVPKQ 63 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152 +D++ + HQG+ L A T+D ++LD++ DPHN+G+I+R Sbjct: 64 KLDRLSASQ-NHQGVVLSVAAFEYATVDDLFANAKKQGIKPFFVILDNIEDPHNLGSIIR 122 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A GII K + +AV+AK+++GA+E +P R++NL ++++ G G Sbjct: 123 TADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARVTNLAATIKELKGRGMWVFGT 182 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +A+I+G EGKG+ P ++ M + M G I++LN S AA+V Sbjct: 183 DIEGTDYRRWD-ARGSVAIIIGNEGKGISPLIKKQVDEMLTIPMVGDIQSLNASVAASVL 241 Query: 273 LYITQNHF 280 +Y N Sbjct: 242 IYQGFNSR 249 >gi|257455361|ref|ZP_05620596.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60] gi|257447323|gb|EEV22331.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60] Length = 258 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 91/258 (35%), Gaps = 8/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLD 82 +++ K + +SR + + G H + A LN +++ ++ Sbjct: 5 SKDNPTIKTTHALLTQSRQRKKLGKTVIEGTHLLEAYLNAGLTPETVIVSESGLHNDEIN 64 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + TV +I + + L + + + ++++ V Sbjct: 65 ALLGRLNQVKTLTVSDNLYKEI---RTLGESLPIMAMIDMPHLDFNQPITSDCLIINGVQ 121 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G + R+A A I+ T + + S ++ GA + + + Sbjct: 122 DNGNLGTLFRTASAVGIKTIVCTMGTASAWSPKTLRAGMGANFSLTIFEGI---SVDEIL 178 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 SS + + Q +ALI+G EG+G+ + + + L P ++ Sbjct: 179 MKVKVPMFATSSHTDHIIYQTDLRQPLALIMGHEGQGVDERLLSQS-APIALPQPNGQES 237 Query: 263 LNVSNAAAVALYITQNHF 280 LNV+ A ++ LY Sbjct: 238 LNVAIAGSLCLYEMLRQR 255 >gi|83319453|ref|YP_424436.1| RNA methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283339|gb|ABC01271.1| RNA methyltransferase, TrmH family [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 255 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 57/280 (20%), Positives = 107/280 (38%), Gaps = 29/280 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +IS + KI + +H ++ + + G H + A Sbjct: 1 MEVISSVSNPKIKEILKLKD-------------------RKHRNKQKLFIVEGFHMIMEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I LL T AL L + P+ V + KI Q A+ + P Sbjct: 42 --YNDQIIKTLLGTSKALEVLKDEI--PNIEQVIEISENVAKKISDTVTSQQIFAICSMP 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + +++LD + DP N+G ++RSA +F+ +I + + + +S Sbjct: 98 ENT----KIDFENNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRST 153 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGK 238 G L + + + Q + D K L + +DK ALI+G EGK Sbjct: 154 QGNLFQVNLVNEYLVKVINQLHDNNYIIIGTSLHDDSKALSKVKFDSDDKYALIIGNEGK 213 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 G+ P+ + ++ M + ++N + A ++ +Y N Sbjct: 214 GISPELLDLIDLNINIEMAENVDSINAAVAGSIIMYQINN 253 >gi|328907932|gb|EGG27692.1| putative rRNA methylase [Propionibacterium sp. P08] Length = 271 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 92/242 (38%), Gaps = 7/242 (2%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + + G V AL P K+ L + + +A + + + ++ Sbjct: 33 DESGLFLVEGSQAVREALAWPG-KVNLLATSDPSRDAEHIEAAEHRGVRIAVLTDEDVNT 91 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + A+ D + +L ++ V DP N G ++R A AF D +I Sbjct: 92 LSDTVTSQGVFAVCRQVTRHKLPD--EDVRLAVICAQVRDPGNAGTVIRCADAFGADCVI 149 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 T+ + +S+ G++ H+P I L DA++ H + Sbjct: 150 LTRGSVDPHNPKTVRSSVGSIFHLPVIVGVELADAVEWAHQREMSVLAADGGGHSLDAVA 209 Query: 224 I---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-H 279 IA ++G E GL + A + + M G +++LN+S AAAV LY T + Sbjct: 210 RSGRLKRPIAWLMGNEAWGLPEADRALADEVVGVPMWGAVESLNLSTAAAVVLYATASEQ 269 Query: 280 FA 281 A Sbjct: 270 RA 271 >gi|313113411|ref|ZP_07799000.1| RNA methyltransferase, TrmH family [Faecalibacterium cf. prausnitzii KLE1255] gi|310624138|gb|EFQ07504.1| RNA methyltransferase, TrmH family [Faecalibacterium cf. prausnitzii KLE1255] Length = 275 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 90/258 (34%), Gaps = 8/258 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ ++R + ++ AL+ + L+ K Sbjct: 18 YARLTQAQLRNRLEPEKGIFIAESPKVIARALDAGYTPLSLLMERKQITGPAADILTRCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T +T+ + G E L PL + RN++ + VL+ + D N+GA Sbjct: 78 DAPVYTADRETLASLTGFELTRGVLCAFRRPLPRSVEEVCRNARRVAVLEGIVDSTNVGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ- 208 I RSA A + D ++ T + + G + +P+ +I + Sbjct: 138 IFRSAAALNMDAVLVTPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCPADWPENGIAQLHS 197 Query: 209 -------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 K+A++LG EG GL T + M + Sbjct: 198 LGFKTAAMALSDRSVSIDDSALSAEPKLAIVLGTEGDGLAHSTIAACDYTVKIPMSHGVD 257 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV+ A+AVA + N Sbjct: 258 SLNVAAASAVAFWQLGNR 275 >gi|326525807|dbj|BAJ88950.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 333 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 55/273 (20%), Positives = 100/273 (36%), Gaps = 25/273 (9%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K+ + + L L G+ + S I LL A + + Sbjct: 59 NPLVKRCVRLRDSAAYRRSCRRLVLVGLAPILEICRLGSVAIDCLLLLDGA--EVPDELR 116 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------------AVRNSQL 134 V V + KI G ++V A+ + D + ++ + Sbjct: 117 ELSGGSVVHVSATVMKKISGMQSVDSTEAIAVMHMPRHFCDLGDDEGGAGLDASFQSPKR 176 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD + DP N+G ++RSA AF DG+ + ++A GA +P + + Sbjct: 177 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKALRAARGASLQLPIVSGNW 236 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK----------NDKIALILGAEGKGLRPKT 244 G S + ++ + L+LG+EG GL +T Sbjct: 237 CDLHALVTRYGMKMFAGHPESSSDGSARTHALSKELADSLVSESLCLVLGSEGNGLSEET 296 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + M GI ++LNVS A + L++ Q Sbjct: 297 VQACD-LVSIPMEGIFESLNVSVAGGIFLFMLQ 328 >gi|293400857|ref|ZP_06645002.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305883|gb|EFE47127.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 243 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 100/252 (39%), Gaps = 17/252 (6%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K+ + +K ++ + + G H + A I +L + + Sbjct: 8 NTKIKQWAKYKEK-KYRDADQKFLIEGEHLLQEAHTAG--LIECILVEQGKNIPYEQY-- 62 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 PV V + + K+ + + S +++LD V DP N Sbjct: 63 -----PVYYVTREILKKLTDSVS-----GSWVMAVCHFPEQQALTSDKIIILDGVQDPGN 112 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G ILR+A++FS I+ +K + + +S GAL H+ IR LT + Sbjct: 113 LGTILRTALSFSYQTILLSKNSVDVYNEKVIRSTQGALFHLNIIRTELLTAIEELKEKGY 172 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 PL Q + ALI+G EGKG+R + ++ M ++LNV+ Sbjct: 173 KIYGTS-LHEAIPLSQVHPKKRHALIMGNEGKGVREEILCQTDQNVYIEM-DTFESLNVA 230 Query: 267 NAAAVALYITQN 278 AAA+ +Y +N Sbjct: 231 VAAAICMYTFKN 242 >gi|256832338|ref|YP_003161065.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM 20603] gi|256685869|gb|ACV08762.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM 20603] Length = 275 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 103/259 (39%), Gaps = 10/259 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++ + +S ++ + G +V + + + L + + + R + Sbjct: 11 RVKMVRRLSGRSS-RTKHGQFLVEGPQSVRELVACRAELVRDLYVSSDRVDRYRDIYDEA 69 Query: 89 HPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 H + P+ + + +A LS + + L+ VL V DP N Sbjct: 70 HRQSLYLHTTTPEVLSAMSEDAQGIVAVARTLDTRLSSLGPVLSKACLVAVLTDVRDPGN 129 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 G ++R+A A D +I + + +S++G+L H+P I ++L D + G Sbjct: 130 AGTVIRAADAAGADVVILAGDSVDLMNPKVVRSSAGSLFHMPVITNASLVDVHGALKMAG 189 Query: 207 FQTIGLSSDSKKPLEQEIKND-------KIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 G + + L+ ++ A + G E +GL + Q S+ + M G Sbjct: 190 IPLFGTTPYADLTLDDLVEPQGPTSVGAPHAWVFGNEAQGLSVEDQSMCDSLVRIPMYGR 249 Query: 260 IKALNVSNAAAVALYITQN 278 ++LN++ AA + LY + Sbjct: 250 AESLNLAMAATICLYTSAR 268 >gi|307290546|ref|ZP_07570458.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0411] gi|306498401|gb|EFM67906.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0411] Length = 258 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 95/238 (39%), Gaps = 3/238 (1%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + + G H V A+ + + L + W A + V + + Sbjct: 23 YREELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTWLAEQETE-KLIFVSDEVL 81 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + LA+ T + + LL+ D++ DP N+G ++R+A A G Sbjct: 82 NSLSELPTSQGILAIVTLETQQEQSLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAG 139 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + + + +S G+ H+P ++ +++ Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYY 199 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ + ALILG EG G+ P+ T ++ M G ++LNV+ AA V ++ +N+ Sbjct: 200 EQEAVEIYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|227513728|ref|ZP_03943777.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227083047|gb|EEI18359.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus buchneri ATCC 11577] Length = 255 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 70/248 (28%), Positives = 117/248 (47%), Gaps = 13/248 (5%) Query: 44 SQPENLFLYGVHTVSAALNN--PSRKIFQL--LATKNALARLDWDANLPHPFPVKTVPPQ 99 Q F+ G H V AAL + P K+F + + + VP Q Sbjct: 4 DQENEEFVMGRHPVVAALKSDSPVNKVFIQTGIKKDENIISEILKLARKKRLVISEVPKQ 63 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152 +D++ + HQG+ L A T+D ++LD++ DPHN+G+I+R Sbjct: 64 KLDRLSAGQ-NHQGVVLSVAAFEYATVDDLFANAKKQGIKPFFVILDNIEDPHNLGSIIR 122 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A GII K + +AV+AK+++GA+E +P R++NL ++++ G G Sbjct: 123 TADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARVTNLAATIKELKGRGMWVFGT 182 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + +A+I+G EGKG+ P ++ M + M G I++LN S AA+V Sbjct: 183 DIEGTDYRRWD-ARGSVAIIIGNEGKGISPLIKKQVDEMLTIPMVGDIQSLNASVAASVL 241 Query: 273 LYITQNHF 280 +Y N Sbjct: 242 IYQGFNSR 249 >gi|194017287|ref|ZP_03055899.1| YsgA [Bacillus pumilus ATCC 7061] gi|194011155|gb|EDW20725.1| YsgA [Bacillus pumilus ATCC 7061] Length = 247 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 98/266 (36%), Gaps = 31/266 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ I K H + ++ + G+H V A Sbjct: 1 MKYIESAKNTNIKQWKKLHTK-------------------KERTKTGLFLVEGIHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + K + + + +D D + + + + E A+ Sbjct: 42 LKSGAVKELMVTSPDKLPSHIDPD------IELYELSEEAFSAMTETETPQHIAAVCA-- 93 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + L++LD V DP N+G ++R+A A D +I + + +SA Sbjct: 94 ---VPVFEEKKYERLLLLDAVQDPGNLGTLIRTADAAGLDAVILGDGTVDAFNGKTLRSA 150 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P ++ + + G G + ++ K ALI+G EG G+ Sbjct: 151 QGSHFHLPILKQTLQ-QTIPVCKEQGIPVYGSALNNAKAYRSVTAEGSFALIVGNEGAGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVS 266 P+ + ++ M G ++LNV+ Sbjct: 210 NPEILQMTDHNLYVPMYGQAESLNVA 235 >gi|295100358|emb|CBK97903.1| rRNA methylases [Faecalibacterium prausnitzii L2-6] Length = 259 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 99/260 (38%), Gaps = 8/260 (3%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 R + K G ++ L T++AL Sbjct: 2 EKITSRENAKVKYACRLASSGAFRRAEGRFLAEGRKLCPELCR--GAELETLFCTESALE 59 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 + + LP V DK+ HQG+ TL+ V+ + L+ Sbjct: 60 KCPELSELPG--EHYLVEDHVADKLAD-VGTHQGV-FGVFRTPVHTLEEVKTGGRYLALE 115 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N+G +LRSA AF DG++ + + + +++ GA IP I + +A+ Sbjct: 116 RVQDPGNVGTLLRSAAAFGFDGVLLSDGCASVFAPKTLRASMGAAVRIPVIEAGKMPEAI 175 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 + G + + +PL D + +++G+EG+GL +T T + M Sbjct: 176 ALLREKGITCLAAALYQSQPLSAAASSYPDGVCVVIGSEGQGLTDETIAACTGTVRIPMT 235 Query: 258 GIIKALNVSNAAAVALYITQ 277 +++LN A ++ L+ + Sbjct: 236 DRVESLNAGIAGSILLWHFR 255 >gi|315032894|gb|EFT44826.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecalis TX0017] Length = 258 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 103/279 (36%), Gaps = 22/279 (7%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ ++ K ++ + + G H V A Sbjct: 1 MKEIISTKNNQLKEW-------------------KKLHKKKYREELNQYIIEGFHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + L + W A + V + ++ + LA+ T Sbjct: 42 VKANAEVQWILFNQRGQQEWGTWLAEQETE-KLIFVSDEVLNSLSELPTSQGILAIVTLE 100 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + LL+ D++ DP N+G ++R+A A G+I K + + + +S Sbjct: 101 TQQEQSLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P ++ +++ ++ + ALILG EG G+ Sbjct: 159 QGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSGV 218 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 P+ T ++ M G ++LNV+ AA V ++ +N+ Sbjct: 219 SPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|256379474|ref|YP_003103134.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827] gi|255923777|gb|ACU39288.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827] Length = 282 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 47/260 (18%), Positives = 94/260 (36%), Gaps = 10/260 (3%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN---NPSRKIFQLLATKNALARLDW- 83 + ++S + G V AL ++ +L T+ A R Sbjct: 20 PRVVAARRLTRRS-GRDRAARFLAEGAQAVREALAWSAAGRGRVHELFVTEVAAERNQEL 78 Query: 84 -DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 DA P+ V + + +A+ + +++L+ VL V Sbjct: 79 VDAAASSGVPISVVTDKAAAALSETVTPQGVVAVCDPVEVPLDAALTPSARLVAVLHGVG 138 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N G ++R A A D ++ + ++++G++ H+P R + D Sbjct: 139 DPGNAGTVVRVADAAGADAVVFAGDSVDVHNGKCVRASTGSVFHLPIARARSAEDVFAAC 198 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + G + + + + L A + G+E GL + + + + G Sbjct: 199 RAAGLRLVAADGYATEDLVTADLRGDLAHPTAWVFGSEAHGLPDEVVTSLDGALKVPLYG 258 Query: 259 IIKALNVSNAAAVALYITQN 278 ++LN++ AAAV LY + Sbjct: 259 GAESLNLATAAAVCLYASAR 278 >gi|42561043|ref|NP_975494.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492540|emb|CAE77136.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320852|gb|ADK69495.1| RNA methyltransferase, TrmH family [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 255 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 58/280 (20%), Positives = 108/280 (38%), Gaps = 29/280 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +IS + KI + +H ++ + + G H + A Sbjct: 1 MEVISSVSNPKIKEILKLKD-------------------RKHRNKQKLFIVEGFHMIMEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I LL T L L + P+ V + KI Q A+ + P Sbjct: 42 --YNDQIIKTLLGTSKTLEVLKDEI--PNIEQVIEISENVAKKISDTVTSQQIFAICSMP 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + +++LD + DP N+G ++RSA +F+ +I + + + +S Sbjct: 98 ENT----KIDFENNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRST 153 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGK 238 G L + + +T Q + D KPL + +DK ALI+G EGK Sbjct: 154 QGNLFQVNLVNEYLVTVINQLHDNNYIIIGTSLHDDSKPLSKVKFDSDDKYALIIGNEGK 213 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 G+ P+ + ++ M + ++N + A ++ +Y N Sbjct: 214 GISPELLDLIDLNINIEMAEDVDSINAAVAGSIIMYQINN 253 >gi|313826065|gb|EFS63779.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL063PA1] Length = 273 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + + G V AL P K+ L + A + V + + ++ Sbjct: 35 DESGLFLVEGAQAVREALAWPG-KVNLLATSDPARDAEHVEVATCRGVRVVVLTDEDVNA 93 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + A+ D +L ++ V DP N G ++R A AF D +I Sbjct: 94 LSDTVTSQGIFAVCRRVTRRELPD--EAVRLAVICAQVRDPGNAGTVIRCADAFGADCVI 151 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 T+ + +S+ G++ H+P + L DA++ H + Sbjct: 152 LTRGSVDPHNPKTVRSSVGSIFHLPVVVGVELADAVEWAHQHQMSVLAADGGGHSLDVVA 211 Query: 224 ---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-H 279 IA ++G E GL + A + + M G ++LN+S AAAV LY T + Sbjct: 212 RSGCLKRPIAWLMGNEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLYATASEQ 271 Query: 280 FA 281 A Sbjct: 272 RA 273 >gi|226360105|ref|YP_002777883.1| RNA methyltransferase [Rhodococcus opacus B4] gi|226238590|dbj|BAH48938.1| putative RNA methyltransferase [Rhodococcus opacus B4] Length = 269 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 92/244 (37%), Gaps = 6/244 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTV 96 ++ + + G ++V AL + L T +A R H V Sbjct: 19 RTAERRKVGRFLVEGENSVGEALATH--PVHDLFYTADAEQRYSALIERAHAAGVRTSLV 76 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + + +A+ + ++LL V V +P N G ++R A A Sbjct: 77 TDRAVRALSDTVTPPGLVAVCELLDVPLAEALGPGTRLLAVPVAVAEPGNAGTVIRVADA 136 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D I + ++++G+L H+P +R + L + + G Q + ++D Sbjct: 137 VGADAAILAGDSVDPHNGKCVRASAGSLFHLPVVRERDTAAVLDTISAAGIQLLATAADG 196 Query: 217 KKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L+ A + G E GL T A + + G ++LN++ AA++ LY Sbjct: 197 EVDLDDADELLARPTAWLFGNEAHGLDAATAARADHRVRIPIHGRAESLNLATAASICLY 256 Query: 275 ITQN 278 + Sbjct: 257 SSAR 260 >gi|304436951|ref|ZP_07396914.1| rRNA methylase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369902|gb|EFM23564.1| rRNA methylase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 276 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 95/263 (36%), Gaps = 8/263 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + +++ + SR ++ + G+ A + + + +L + A Sbjct: 11 ENPLIRRLSVLVRSSRRAAKENVFLVEGLRLAEMAARSDGQILHAVLTERALAAERAAIL 70 Query: 86 NL---PHPFPVKTVPPQTIDKIVGKEAVHQG---LALETAPLLSPTLDAVRNSQLLMVLD 139 PV VPP+ +A + L+ + A + LD Sbjct: 71 AEQLHLRGVPVNCVPPRLFAACAETDAPQGILLLMQRPPRRSLTDLVHAAEKVPFYLALD 130 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N+G ILR+A A G+I + + S+ + ++ G+L ++P+I + + L Sbjct: 131 RVQDPGNVGMILRTADAAGAAGVILLRGCADVYSSKVVRATMGSLFYVPFISGVDDEELL 190 Query: 200 QKMHSWGFQ-TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + ++LG E G+ + ++ M G Sbjct: 191 RFAQEQSLYLYAAACDADAVTHFAADLCRPTIVVLGNEANGVSERLLGAC-QHLYVPMCG 249 Query: 259 IIKALNVSNAAAVALYITQNHFA 281 ++LNV++AA LY + + Sbjct: 250 QAESLNVASAATAILYESMRQRS 272 >gi|330470431|ref|YP_004408174.1| TrmH family RNA methyltransferase [Verrucosispora maris AB-18-032] gi|328813402|gb|AEB47574.1| RNA methyltransferase, trmh family, group 3 [Verrucosispora maris AB-18-032] Length = 373 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 60/253 (23%), Positives = 113/253 (44%), Gaps = 11/253 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLL-ATKNALARLDWDANLPHPFPVKT 95 + + ++ L G + V AL P+ ++ + + Sbjct: 119 RKSNPAKDAPELLVGRNPVLEALRAQVPATALYTAQGIDMDDRVNEIIRTAADRGIAILE 178 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGA 149 + +D++ G +HQG+ L+ P + +++ LL+ LD V DP N+GA Sbjct: 179 ISRAELDRMTG-GVLHQGVGLQVPPFAYEPFEDLVAAALEQSAPLLVALDGVTDPRNLGA 237 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ++RSA AF G+ +R + +A ++++GA +P +++NLT +L+ GF Sbjct: 238 VIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACRDAGFMV 297 Query: 210 IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL +D + L + +++G+EG+GL +T + M +++LN S A Sbjct: 298 VGLDADGETDLYDLEAAVGPLVVVVGSEGRGLSRLVGQTCDLTVSIPMVSEVESLNASVA 357 Query: 269 AAVALYITQNHFA 281 AAV L A Sbjct: 358 AAVTLAEVARRRA 370 >gi|323466130|gb|ADX69817.1| TrmH family RNA methyltransferase [Lactobacillus helveticus H10] Length = 255 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 91/237 (38%), Gaps = 5/237 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQT 100 + + + G H A+ + +K LL T+ AL + + D ++ V + Sbjct: 23 YRDEEGRYLIEGFHLFDEAIKSG-QKYQYLLGTEEALDKAEEDYDVDLSGKNVILINKAI 81 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + + + + LL D++ DP N+G I+R+A A D Sbjct: 82 ARHLSSTKNSQEIFMVLKIDQPREFPFNYGKWVLL---DNLADPGNVGTIIRTADAAGFD 138 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ + + + ++ ++ G+ HI I+ + + + K L Sbjct: 139 GVVLSPKSADLYNSKTQRAMQGSQFHIDLIKRDLADVITDFQDAAIPVYASMLDKTAKQL 198 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K ++ALI+G E G+ + ++ + G ++LN + AA + +Y Sbjct: 199 PDFEKVSQLALIIGNEAHGVSSTIASLSDEKLYIPIKGKAESLNAAVAAGIMIYHFA 255 >gi|291531350|emb|CBK96935.1| rRNA methylases [Eubacterium siraeum 70/3] Length = 303 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 89/256 (34%), Gaps = 8/256 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y + + + + + AL+ + I K R + Sbjct: 45 YTHLTDARLRKVYEYEHGIFIAESQTVIEVALDAGCKPISMFTDRKYINDRANGIIERCG 104 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + + G E L P + +N++ + VL+++ D N GA Sbjct: 105 DIPVYTADSKIMSGLTGYELTRGMLCAMERPAPKRAEELCKNARRIAVLENIADVSNTGA 164 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ- 208 I+RSA A D ++ T + + G + IP+ I Q Sbjct: 165 IIRSAAALGIDAVLITPSCCDPLCRRAIRVSMGTVFLIPWGYIGEDEHWWQSHGPAYLNS 224 Query: 209 -------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + +++A+ILG+EG GL KT + + M + Sbjct: 225 LGFKTAAMALTDNSVSIDDKTLQSEERLAIILGSEGYGLSQKTIDGCDYTVKIPMYHGVD 284 Query: 262 ALNVSNAAAVALYITQ 277 +LNV AAAVA + Sbjct: 285 SLNVGAAAAVAFRELR 300 >gi|213618544|ref|ZP_03372370.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 220 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 7/219 (3%) Query: 69 FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP---- 124 L ++ A ++ Q +D+ AVHQG+ P Sbjct: 3 LILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSD-GAVHQGIIARVKPGRQYQEND 61 Query: 125 --TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L A+ + L++LD V DPHN+GA LRSA A +I K S +A K A G Sbjct: 62 LPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 121 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 A E +P IR++NL ++ + +G + ++ L Q ++AL++GAEG+G+R Sbjct: 122 AAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMPGRMALVMGAEGEGMRR 181 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 T+E + + M G + +LNVS A + L+ Sbjct: 182 LTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRT 220 >gi|260436245|ref|ZP_05790215.1| putative RNA methyltransferase TrmH family, group 3 [Synechococcus sp. WH 8109] gi|260414119|gb|EEX07415.1| putative RNA methyltransferase TrmH family, group 3 [Synechococcus sp. WH 8109] Length = 515 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 74/290 (25%), Positives = 132/290 (45%), Gaps = 20/290 (6%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL-------FLYGVHTVSAA 60 ++++ + S + + + R + + + ++G H AA Sbjct: 139 RNDRFGDRRRSGDERRQPSQRPRSRFDEARPQRPDAAPEAAAATPPADDLIWGRHATQAA 198 Query: 61 LNNPSRKIFQLLATKNALA--RLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 L R I ++ T + + V+ V + +I G +VHQG+AL Sbjct: 199 LEAG-RPIHRIWCTAEMRSASKFLQLLRDAKASGVLVEEVTWARLGQITG-GSVHQGIAL 256 Query: 117 ETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 +TA + LD++ LL+ LD V DPHN+GA++RSA A G++ +R S Sbjct: 257 QTAAAETLDLDSLIEGCSDLGEPPLLVALDGVTDPHNLGAVVRSAEAMGAHGVVIPQRRS 316 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + AK A+GALEH+P R+ NL +L+K+ G++ +GL+++ L + + Sbjct: 317 AGLTGSAAKVAAGALEHLPVARVVNLNRSLEKLKDAGYRVVGLAAEGDVTLTDVDLSGPM 376 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G+E +GL T+ + + + GI +LN S A A+ +Y Sbjct: 377 VLVTGSEDQGLSLMTRRHCDQLVRIPLRGITPSLNASVATALCVYEVARR 426 >gi|148651964|ref|YP_001279057.1| RNA methyltransferase [Psychrobacter sp. PRwf-1] gi|148571048|gb|ABQ93107.1| RNA methyltransferase, TrmH family, group 3 [Psychrobacter sp. PRwf-1] Length = 261 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 56/251 (22%), Positives = 99/251 (39%), Gaps = 22/251 (8%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALAR-------------LDWDANLPHPFPVKTVPP 98 YG+H + A L++ L + + ++ Sbjct: 8 YGIHAIHALLSHRPTDAMALFIQQGRAHKDSSTQDEADSTFEEILQLAEQMGVSIQEASR 67 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSA 154 + + G + ++ + + L +VLD + D HN+GA LR+A Sbjct: 68 DKLTALCGSPQHQGVVLNARPLAMADEGEIASLAQSDDALFLVLDQITDAHNLGACLRTA 127 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLS 213 A D +I K +S S + +AK + GA+E +P I ++NL ++ + F Sbjct: 128 AAMGVDAVICPKHHSASLTPTVAKVSVGAMEIMPVIAVTNLARCIENLKQAGVFVYGTAL 187 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK----ALNVSNAA 269 + K L K+A+I+G+EG+G+R T E + ++ M G +LNVS A Sbjct: 188 DATAKALPDVDLKGKVAIIMGSEGEGMRRLTTERCDELVYIPMTGNKHGSLQSLNVSVAT 247 Query: 270 AVALYITQNHF 280 + LY Sbjct: 248 GMVLYEVSRQR 258 >gi|257440569|ref|ZP_05616324.1| tRNA/rRNA methyltransferase [Faecalibacterium prausnitzii A2-165] gi|257196892|gb|EEU95176.1| tRNA/rRNA methyltransferase [Faecalibacterium prausnitzii A2-165] Length = 259 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 95/260 (36%), Gaps = 8/260 (3%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 R + K G + L T+ AL Sbjct: 2 EKITSRENAKIKYACRLASSGAFRRSEGKFLAEGRKLCPELCR--GAALETLFCTEAALE 59 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 + A LP V DK+ HQG+ TLD + + L+ Sbjct: 60 KCPELAGLPG--EHYLVEDHVADKLAD-VGTHQGV-FGIFRTPVHTLDEAKTGGRYLALE 115 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N+G +LRSA AF DG++ + + + +++ GA +P + + + A+ Sbjct: 116 RVQDPGNVGTLLRSAAAFGFDGVLLSDGCASVFAPKTLRASMGAAVRVPVMEVGAMPAAI 175 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 + + + + +PL + +++G+EG+GL +T + + M Sbjct: 176 AALRAKNITCLAAALYQSQPLSAARPGYPGGVCVVIGSEGQGLTEETIAACSGTVRIPMT 235 Query: 258 GIIKALNVSNAAAVALYITQ 277 +++LN A ++ L+ + Sbjct: 236 DRVESLNAGIAGSILLWHFR 255 >gi|225011636|ref|ZP_03702074.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium MS024-2A] gi|225004139|gb|EEG42111.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium MS024-2A] Length = 244 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 102/244 (41%), Gaps = 11/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 E + ++G+ + A+ + +++ L T++ L VP + +D+ Sbjct: 2 EETVTIFGIRAILEAIESGKSLDRVWLLKGTQSKLFEQLLHVLRNKNIAFSFVPVERLDR 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 HQG L + ++ + + + ++LD V D N GAILRSA A Sbjct: 62 FSS--KNHQGAVARIGALSTQDMEPLIESVLKEKENPVFVLLDGVTDTRNFGAILRSAAA 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D + + S + + K+++G +P ++ +L D + + + T+G++ S Sbjct: 120 TGVDAVFISSTGSAPLNGDVVKTSAGGAFKVPISKVQHLKDVVYYLKAHDIPTLGITEKS 179 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + L +AL+ GAE G+ + A L M + +LNVS A AV Y T Sbjct: 180 TETLYDSDLKGPLALVFGAEDVGISNGLLKILDHKAKLPMTEAVDSLNVSVACAVVFYET 239 Query: 277 QNHF 280 Sbjct: 240 IRQR 243 >gi|254428391|ref|ZP_05042098.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax sp. DG881] gi|196194560|gb|EDX89519.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax sp. DG881] Length = 249 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 16/243 (6%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTIDKIVG 106 G H V A L + + +L + R D A V+ + ++K G Sbjct: 9 GFHAVEALLRHRPEAVLELFVQDTRVDRDDPRLAAMIQAAKDFGIAVQRARREVLEKHAG 68 Query: 107 KEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + HQG+ P LD S LL++L++V DPHN+GA LRSA A Sbjct: 69 PQ--HQGIVARARPRRPADESALLQWLDGKPASPLLLILENVTDPHNLGACLRSADAAGV 126 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKK 218 +I +R + + V ++A GA E + Y I NL L + + + + Sbjct: 127 QAVIVPRRNAAGLTPVACRTAVGAAESLVYYEIGNLASLLDQLRDRGVWVVGTALEERSE 186 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L + +A+++GAEG GL+ T++ + + M G +++LNVS A V L+ + Sbjct: 187 SLFTFQPPESLAIVMGAEGSGLKRLTRDKCDQLLEIPMAGEVQSLNVSVATGVMLFQVRA 246 Query: 279 HFA 281 + Sbjct: 247 QRS 249 >gi|326577747|gb|EGE27623.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis O35E] Length = 258 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 91/257 (35%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K + R + + GVH V A L + +++ +++A A + Sbjct: 5 SKDNPIIKHTHALLGHHRTRKKSRQTVIEGVHLVEAYLKQTP-AVHRIIVSESATAHDEV 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 L P + + + + +L + L++ D + D Sbjct: 64 LPLLSQIDPKQITIISDTLYQQIRTLGDSVSVMAVIDIPHRSLPTISGDCLIL--DGLQD 121 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 NIG +LR+ A +IT+ + S ++ GA I I + + Sbjct: 122 LGNIGTLLRTTSAVGIQTVITSPNTAHLWSPKCLRAGMGAH---FSISIYEHIAVDEILQ 178 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 SS + K + IA +LG EG+G+R + A L PG ++L Sbjct: 179 KLKTPLYATSSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNA-IPIALPQPGGQESL 237 Query: 264 NVSNAAAVALYITQNHF 280 NV A +V Y Sbjct: 238 NVGIAGSVCFYEMLRQR 254 >gi|254387149|ref|ZP_05002420.1| tRNA/rRNA methyltransferase [Streptomyces sp. Mg1] gi|194345965|gb|EDX26931.1| tRNA/rRNA methyltransferase [Streptomyces sp. Mg1] Length = 323 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 110/275 (40%), Gaps = 18/275 (6%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE-----NLFLYGVHTVSAALNNP---SRKI 68 + K + +R M K R + + + G + V AL + S Sbjct: 38 KAEDRKKHKANRISNAMARQAAKRRPAPRRGGPKGTSEMVVGRNPVFEALRDGVPASTLY 97 Query: 69 FQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 Q + R + P +D++ HQGL L+ P + Sbjct: 98 VQQFIDNDERVREALQLAAERGNINLMEAPRPELDRLTNGL-NHQGLVLQVPPYEYAHPE 156 Query: 128 A-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L++ LD V DP N+GAI+RS AF G++ +R + +A K++ Sbjct: 157 DLTAAAYDNGEDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVIPERRAAGMTAGAWKTS 216 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKG 239 +G P R++NLT ALQ G +GL+++ + + +++G+EGKG Sbjct: 217 AGTAARTPVSRVTNLTRALQDYKKAGITIVGLAAEGTHTVNDLAELAGPVVIVVGSEGKG 276 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L E + + MPG ++LN AA V LY Sbjct: 277 LGRLVGENCDYLVRIPMPGGAESLNAGVAAGVVLY 311 >gi|332358339|gb|EGJ36165.1| SpoU rRNA methylase [Streptococcus sanguinis SK355] Length = 246 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 106/276 (38%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I+ K + + K H+ K R++ + + G H A Sbjct: 1 MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 ++N + I ++ A RL + V V P+ + + + +A Sbjct: 40 VSNGAELI-RIFALAEYAERLADFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 92 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L++V DP N+G I+R+A A DG+ + + + +S Sbjct: 93 RKEIPSELSGRY---LFLENVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P RI S S + + + + L++G EG+G+ Sbjct: 150 QGSHFHLPVYRIDTADFIRLARSSSLPILASTLSSTSIDYREVVSKESFVLVMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P+ A + H+ M G ++LNV+ AA + ++ Sbjct: 210 SPEMTVAADILVHISMKGQAESLNVAVAAGILIFHL 245 >gi|313113889|ref|ZP_07799449.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium cf. prausnitzii KLE1255] gi|310623792|gb|EFQ07187.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium cf. prausnitzii KLE1255] Length = 310 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 70/279 (25%), Positives = 127/279 (45%), Gaps = 18/279 (6%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHTSQP----ENLFLYGVHTVSAALNNPSRKIFQLLAT 74 H ++R + + ++ +++ R + + +YG + V+ L + S L+A Sbjct: 30 HLPVIQRKEKIIMEEKNQSRRPRRSPEEPLQKNESLVYGKNPVTELLKSGSGVDTVLIAE 89 Query: 75 KNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---- 128 A A + L VK V P + + G E+ HQG+A + + T+D Sbjct: 90 GMAPAVAAYYTALAKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIKYVTVDDLMAA 148 Query: 129 ---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + L++ D + DPHN+GA++RSA+ GI+ KR S + + KS++GA E Sbjct: 149 AKDKGEAPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAE 208 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +P R++N+ + ++++ G L + IAL+LG+EG G+ + Sbjct: 209 RLPVARVANIGETIRRLKEQGVFVYCA-DMDGVSLRRNNLTGPIALVLGSEGSGVSQLVK 267 Query: 246 ETATSMAHLHMPG---IIKALNVSNAAAVALYITQNHFA 281 + + L M + + NVS AA + LY Q+ A Sbjct: 268 KLCDGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQRA 306 >gi|260103135|ref|ZP_05753372.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM 20075] gi|260083045|gb|EEW67165.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM 20075] Length = 255 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 89/236 (37%), Gaps = 5/236 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQT 100 + + + G H A+ + +K LL T+ AL + + D ++ V + Sbjct: 23 YRDEEGRYLIEGFHLFDEAIKSG-QKYQYLLGTEEALDKAEEDYDVDLSGKNVILINKAI 81 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + + + + LL D++ DP N+G I+R+A A D Sbjct: 82 ARHLSSTKNSQEIFMVLKIDQPREFPFNYGKWVLL---DNLADPGNVGTIIRTADAAGFD 138 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ + + + ++ G+ HI I+ + + + K L Sbjct: 139 GVVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLADVITDFQDAAIPVYASMLDKTAKQL 198 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K ++ALI+G E G+ + ++ + G ++LN + AA + +Y Sbjct: 199 PDFEKVPQLALIIGNEAHGVSSTIASLSDEKLYIPIKGKAESLNAAVAAGIMIYHF 254 >gi|84498462|ref|ZP_00997232.1| putative tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649] gi|84381205|gb|EAP97089.1| putative tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649] Length = 316 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 71/273 (26%), Positives = 117/273 (42%), Gaps = 15/273 (5%) Query: 17 DSHYAKLRRNHRDYK--KMQSFNQKSRHTS-QPENLFLYGVHTVSAALNNPSRKIFQLLA 73 + + H K + +S + + + + + G ++V AL N + + Sbjct: 39 RAEDRTYHKAHSAAKASERRSGGRPTGGRKAKASSEVVAGRNSVLEALRND-VPVTTMYI 97 Query: 74 ----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 + R P+ P +D+I AVHQGLAL+ P + + Sbjct: 98 AGRIDSDDRVREALKIATERSLPILETPRGELDRITD-GAVHQGLALQVPPYEYAHPNDL 156 Query: 130 -----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++ LD + DP N+GAI+RS AF G++ R S +A K+++GA Sbjct: 157 IDPELPGIPLIVALDGITDPRNLGAIVRSVAAFGGHGVVVPARRSVGMTASAWKTSAGAA 216 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPK 243 IP + +NLT L+ GF IGL + L N+ I +++G+EGKGL Sbjct: 217 ARIPVAQCTNLTRTLEDYRKAGFFVIGLDMEGDVELPDLELANEPIVIVVGSEGKGLSRL 276 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +ET + + M +++LN A V LY Sbjct: 277 VRETCDQIVSVPMSSAVESLNAGIATGVTLYEV 309 >gi|42518495|ref|NP_964425.1| hypothetical protein LJ0402 [Lactobacillus johnsonii NCC 533] gi|227888793|ref|ZP_04006598.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|268318914|ref|YP_003292570.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii FI9785] gi|41582780|gb|AAS08391.1| hypothetical protein LJ_0402 [Lactobacillus johnsonii NCC 533] gi|227850630|gb|EEJ60716.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|262397289|emb|CAX66303.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii FI9785] gi|329666766|gb|AEB92714.1| RNA methylase [Lactobacillus johnsonii DPC 6026] Length = 251 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 13/240 (5%) Query: 46 PENLFLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + F+YG H L N K+F + A + V+ P + Sbjct: 4 NNDEFVYGRHAGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKL 63 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSA 154 D++V E HQGL L AP LD +++LD + DPHN+G+ILR+ Sbjct: 64 DQMVNHE-NHQGLVLTVAPFEYADLDELLDKFDQEGKEPFILMLDSIEDPHNLGSILRTC 122 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A D +I KR + ++V+AK+++GA++++P R++NL + + G+ G + Sbjct: 123 DATGVDAVIIPKRRASGLTSVVAKTSTGAIDYVPVARVNNLVQTTKMLKKRGYWIFGTAM 182 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + K K L++G EGKG+ P + + M G +++LN S A V LY Sbjct: 183 EGEDYRKWNAK-GKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241 >gi|323136537|ref|ZP_08071619.1| RNA methyltransferase, TrmH family, group 3 [Methylocystis sp. ATCC 49242] gi|322398611|gb|EFY01131.1| RNA methyltransferase, TrmH family, group 3 [Methylocystis sp. ATCC 49242] Length = 278 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 106/260 (40%), Positives = 146/260 (56%), Gaps = 5/260 (1%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSR---HTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 + RR + + SR PE + +YG H V AL RK+ L AT Sbjct: 7 PKDRQPRRERPGPVRDRPRGDPSRVPFRGPSPEVVTIYGAHAVREALKARRRKLLALYAT 66 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-TLDAVRNSQ 133 + AL R+ D + V + + + +G EAVHQGL LE PL D S Sbjct: 67 ETALPRIA-DLARGAGVEPRLVDGRDLSRHLGDEAVHQGLLLEARPLPEAGVGDIEPKSG 125 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++ LD + DPHN+GAILR+A AF D +I T+R+SP + VLAK+ASGALEH+ + + Sbjct: 126 IVLALDQITDPHNVGAILRTACAFGVDALIITERHSPEFTGVLAKAASGALEHVTIVSVV 185 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL AL ++ G+ +GL S+ +PLE +AL+LGAEGKGLR T+E ++A Sbjct: 186 NLARALDELRGAGYGVVGLDSEGAEPLETIALPKPLALVLGAEGKGLRRLTRERCDAIAR 245 Query: 254 LHMPGIIKALNVSNAAAVAL 273 L +PG IK+LNVSNA A AL Sbjct: 246 LDLPGPIKSLNVSNACAAAL 265 >gi|317970561|ref|ZP_07971951.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CB0205] Length = 267 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 55/283 (19%), Positives = 90/283 (31%), Gaps = 28/283 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M LI+ R + ++++ +Q S+ + L L G H + Sbjct: 1 MELITS------------------RRNPLVGRLRALHQ-SKGRREQGLLLLEGTHQLQEL 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L QLLAT L R ++ + P + + Sbjct: 42 LRLGLSP-EQLLATPAWLERHGSLL----GNLIERLQPVGETVLAAVATTETPDGVVATF 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 A ++ LD + DP N+G ++R+A+A + + P + VL SA Sbjct: 97 KREALPKAQGIGAFVLALDQLQDPGNLGTLMRTALAAGVNDLWLGGGADPCQPKVLRASA 156 Query: 181 SGA----LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 A P A + D P + L+LG E Sbjct: 157 GAALALPHWRDPDRTGLVARLAEAAAAGHQLVATLVDPDRAIPYWELDWTRPTVLLLGNE 216 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 G GL P+ A+ + +++LNV AAA L Sbjct: 217 GAGLHPELAALASHRVTIPHSPAVESLNVGVAAAPLLLERWRQ 259 >gi|223933718|ref|ZP_03625692.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591] gi|330833335|ref|YP_004402160.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis ST3] gi|223897599|gb|EEF63986.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591] gi|329307558|gb|AEB81974.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis ST3] Length = 246 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 95/230 (41%), Gaps = 10/230 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + + G H + A+ + I + + ++ AN V V P+ + + Sbjct: 24 RTSSYLIEGWHLLEEAMEAGAN-IEHIFVVEEYFEKVAGLAN------VTVVSPEIMQDL 76 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + +A L L +VL+ V DP N+G ++R+A A DG+ Sbjct: 77 ADSKTPQGVVAQLA---LPSQLLPETLDGKFLVLEDVQDPGNVGTMIRTADAAGFDGVFL 133 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + + + + + +S G+ H+P R+ + + S ++ Sbjct: 134 SDKSADIYNMKVLRSMQGSHFHLPVYRMPISSILTALKSNQIKILATTLSSQSVDYKEIT 193 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + AL++G EG+G+ + A + H+ MPG ++LNV+ AA + L+ Sbjct: 194 PHSSFALLMGNEGQGISDLVADEADQLVHITMPGQAESLNVAIAAGILLF 243 >gi|328955960|ref|YP_004373293.1| RNA methyltransferase, TrmH family, group 3 [Coriobacterium glomerans PW2] gi|328456284|gb|AEB07478.1| RNA methyltransferase, TrmH family, group 3 [Coriobacterium glomerans PW2] Length = 284 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 106/238 (44%), Gaps = 11/238 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + G + AL LLA + AL+ L P+ VP +D + Sbjct: 39 IEGRRAATEALRAGVPVHRALLADGAETEGALSGLIGALER-GGVPIARVPRAKLDALSS 97 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 A HQG+ LET P T++ V L++VLDHV D N GAI+RSA G Sbjct: 98 HGA-HQGIVLETEPFPYATVEDVIARAGAGAALVVVLDHVTDEGNFGAIVRSAEVVGAAG 156 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + + K+++GA+ H+P R+ N+ AL+ + GF G + ++ + Sbjct: 157 VIIASKRAAAVGVGAYKTSAGAVMHLPIARVPNIVRALEALKGAGFWVGGATEHARDTVW 216 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +IAL+ G+EG GL E+ L G ++LNV+ AA V Y Sbjct: 217 DASLEGRIALVAGSEGSGLSRLVLESCDFTVRLPQRGQTESLNVAQAATVLCYEWLRR 274 >gi|120404299|ref|YP_954128.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1] gi|119957117|gb|ABM14122.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii PYR-1] Length = 248 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 97/240 (40%), Gaps = 5/240 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + + G + V AAL + ++ AT+ A A+ A L V V Sbjct: 9 RHTGRRRAARFLAEGPNLVEAALRRG--LVHEVFATEGAAAKF---AALLGAASVHLVTD 63 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + + +A+ + P N +L+ V +++P N G ++R A A Sbjct: 64 KAAKALSDTVTPVGLVAVCSIPEADLDQVLAGNPKLVAVPVGISEPGNAGTLIRVADAMG 123 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D ++ + ++++G++ IP + + A+ K+ G Q + D Sbjct: 124 ADAVVLAGDSVDPYNGKCLRASAGSIFSIPVLSAPDAVAAVTKLKDAGLQVLATVLDGPV 183 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 LE + A + G E GL AT+ + MPG ++LNV++AAA+ LY + Sbjct: 184 SLEDADLSVPTAWLFGPEAHGLPADVAGLATAGVRIPMPGNAESLNVASAAAICLYQSAR 243 >gi|332637993|ref|ZP_08416856.1| tRNA/rRNA methyltransferase [Weissella cibaria KACC 11862] Length = 298 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 71/295 (24%), Positives = 130/295 (44%), Gaps = 29/295 (9%) Query: 13 FSLKDSHYAKLRRNHRDYKK--MQSFNQKSRHTSQP--------------ENLFLYGVHT 56 + ++ R+ ++ + FN + R Q + F++G H Sbjct: 5 TNNRNGRDRGGRQERPTNRRGADRRFNDRDRQPRQKREMRVEAEAVDDTAQTEFVFGHHA 64 Query: 57 VSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 AL +I ++ ++ + ++ P +D++ + HQG Sbjct: 65 SVEALK-GETEINKVWLQSGLADKIRNEVMALAKKRGLIIQDAPKAKLDELTNGQ-NHQG 122 Query: 114 LALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 + L A T+D + +VLD + DPHN+G+ILR+A A GII K Sbjct: 123 VVLSIAAYAYATIDDLFAKAAEKSEAPFFLVLDSIEDPHNLGSILRTADAAGVHGIIIPK 182 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R + ++V+AK+++GA+EH+P R++NL ++++ G G D K + Sbjct: 183 RRAVQLTSVVAKTSTGAIEHVPVARVTNLVQTVEQLKERGLWVFGTDMDGKDYRRWDAA- 241 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ALI+G EGKG+ P ++T + M G +++LN S AA++ +Y + Sbjct: 242 GPTALIIGNEGKGISPLLKKTVDETLTIPMVGHVQSLNASVAASLLIYQAFSSRN 296 >gi|302190606|ref|ZP_07266860.1| tRNA/rRNA methyltransferase [Lactobacillus iners AB-1] gi|309803736|ref|ZP_07697822.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LactinV 11V1-d] gi|309806501|ref|ZP_07700505.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LactinV 03V1-b] gi|309809230|ref|ZP_07703100.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners SPIN 2503V10-D] gi|312871532|ref|ZP_07731625.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 3008A-a] gi|312872509|ref|ZP_07732577.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2062A-h1] gi|312873896|ref|ZP_07733934.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2052A-d] gi|312874966|ref|ZP_07734985.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2053A-b] gi|325912438|ref|ZP_08174833.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners UPII 143-D] gi|325913087|ref|ZP_08175457.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners UPII 60-B] gi|329920390|ref|ZP_08277122.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners SPIN 1401G] gi|308164145|gb|EFO66406.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LactinV 11V1-d] gi|308167100|gb|EFO69275.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LactinV 03V1-b] gi|308170464|gb|EFO72487.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners SPIN 2503V10-D] gi|311089711|gb|EFQ48136.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2053A-b] gi|311090572|gb|EFQ48978.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2052A-d] gi|311091871|gb|EFQ50247.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2062A-h1] gi|311092927|gb|EFQ51278.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 3008A-a] gi|325475780|gb|EGC78951.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners UPII 143-D] gi|325477508|gb|EGC80650.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners UPII 60-B] gi|328936066|gb|EGG32519.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners SPIN 1401G] Length = 258 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 12/247 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 F++G H L KIF + ++A + V++VP Sbjct: 4 DSNNVDFVFGRHAGLDFLRTQDASLINKIFLQNGVQASIADQVYQLAKKKKIIVQSVPKS 63 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRS 153 +DK+V ++ HQGL L P L+ + L++LD + DPHN+G+ILR+ Sbjct: 64 KLDKLVDQQ-NHQGLVLAITPFEYTDLNDLLKSIEEKADPFLLMLDSIEDPHNLGSILRT 122 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A DGII +R + ++V+AK+++GA++++P +R++NL + + G+ G + Sbjct: 123 ADATGVDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDTLKDKGYWFFGTA 182 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + K L++G EGKG+ P + + M G +++LN A + L Sbjct: 183 MSGDNYTNWD-ARGKCVLVIGNEGKGISPLLLKQMDQTLTIPMTGHVQSLNAGVATGILL 241 Query: 274 YITQNHF 280 Y N Sbjct: 242 YQMFNSR 248 >gi|259500942|ref|ZP_05743844.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335] gi|315653977|ref|ZP_07906893.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195] gi|259167636|gb|EEW52131.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335] gi|315488673|gb|EFU78319.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195] Length = 262 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 12/247 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 F++G H L KIF + ++A + V++VP Sbjct: 8 DSNNVDFVFGRHAGLDFLRTQDASLINKIFLQNGVQASIADQVYQLAKKKKIIVQSVPKS 67 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRS 153 +DK+V ++ HQGL L P L+ + L++LD + DPHN+G+ILR+ Sbjct: 68 KLDKLVDQQ-NHQGLVLAITPFEYTDLNDLLKSIEEKADPFLLMLDSIEDPHNLGSILRT 126 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A DGII +R + ++V+AK+++GA++++P +R++NL + + G+ G + Sbjct: 127 ADATGVDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDTLKDKGYWFFGTA 186 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + K L++G EGKG+ P + + M G +++LN A + L Sbjct: 187 MSGDNYTNWD-ARGKCVLVIGNEGKGISPLLLKQMDQTLTIPMTGHVQSLNAGVATGILL 245 Query: 274 YITQNHF 280 Y N Sbjct: 246 YQMFNSR 252 >gi|257440435|ref|ZP_05616190.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium prausnitzii A2-165] gi|257197057|gb|EEU95341.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium prausnitzii A2-165] Length = 267 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 68/263 (25%), Positives = 117/263 (44%), Gaps = 14/263 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH- 89 K + + S +YG + V+ L + S L+A A A + + Sbjct: 5 KMPRRPRRSSTEEQPKNESLVYGKNPVTELLKSGSGVDTVLIAEGMAPAVAAYYTAMAKE 64 Query: 90 -PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHV 141 VK V P + + G E+ HQG+A + + T++ L++ D + Sbjct: 65 AGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYVTVEDLLNVAREKGEPPFLVLSDGI 123 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DPHN+GA++RSA+ GI+ KR S + + KS++GA E +P R++N+ + +++ Sbjct: 124 EDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLPVARVANIGETIRR 183 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--- 258 + G PL + IAL+LG+EG G+ ++ + L M Sbjct: 184 LKDQGVFVYCA-DMDGVPLRKNNLTGPIALVLGSEGSGVSQLVKKLCDGVVRLDMAAQGT 242 Query: 259 IIKALNVSNAAAVALYITQNHFA 281 + + NVS AA + LY Q+ A Sbjct: 243 GVDSFNVSVAAGIILYEIQSQRA 265 >gi|197301328|ref|ZP_03166413.1| hypothetical protein RUMLAC_00059 [Ruminococcus lactaris ATCC 29176] gi|197299646|gb|EDY34161.1| hypothetical protein RUMLAC_00059 [Ruminococcus lactaris ATCC 29176] Length = 279 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 53/278 (19%), Positives = 107/278 (38%), Gaps = 25/278 (8%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K++ +KSR + + G V P +I +L +++ R + Sbjct: 6 SNAQIKELAKLQKKSRLRDERRIFLVEGPRMVEEI---PKERIERLYISES-FERKNPAY 61 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQ---------------------GLALETAPLLSP 124 P + + + + ++ Sbjct: 62 IRELGMPAEVLSDPVFSYVSDTKNPQGILAVVKRLEYTMEDVLGKSALKCEEKSGEKEKN 121 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + ++VLD++ DP N+G I R+A A GI+ + + + +S GA+ Sbjct: 122 PENHQIRVPHVIVLDNLQDPGNLGTIFRTAEAAGATGILLSSDSVDVYNPKVIRSTMGAV 181 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P+ + +L A++ + S G +T + K ++E + A ++G EG GLR + Sbjct: 182 FRMPFFYVKDLPAAVKSLSSQGIRTYAAHLNGKNVYDEEDYTEGCAFLIGNEGNGLRDEV 241 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 E A + + M G ++LN + AAAV ++ K Sbjct: 242 SECADCLIRIPMCGKAESLNAAVAAAVLMFEAGRQRRK 279 >gi|162451975|ref|YP_001614342.1| tRNA/rRNA methyltransferase [Sorangium cellulosum 'So ce 56'] gi|161162557|emb|CAN93862.1| tRNA/rRNA methyltransferase [Sorangium cellulosum 'So ce 56'] Length = 248 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVG- 106 +YG+ V A+ ++ +L ++ +LD A L P + P +D+ Sbjct: 4 LVYGLQPVREAIRAHGARVGWVLVQRDGGPKLDALARLAEGQGIPTERAPRNELDRRSAG 63 Query: 107 ------KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + + + + + + LD V DP N GA++RSAVA Sbjct: 64 GRHQGAVASAPELQIVGVDEIPVVEEGQPGAGTITVALDGVMDPQNFGAVIRSAVALGAR 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 I+ + S + ++++GA+EH R+ +L DAL+ + + G I L + L Sbjct: 124 AILWPEHSSAPLTPATFRASAGAIEHARLCRVPSLPDALEALAARGVAAIALDAQGPVEL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A+++GAE KG R + +A L M G I +LN S A A+ALY Sbjct: 184 GELPLTGPVAIVIGAEDKGTRRSVRRVCQHVARLPMTGPISSLNASVAGAIALYEVVRQR 243 >gi|153955807|ref|YP_001396572.1| methyltransferase [Clostridium kluyveri DSM 555] gi|219856174|ref|YP_002473296.1| hypothetical protein CKR_2831 [Clostridium kluyveri NBRC 12016] gi|146348665|gb|EDK35201.1| Predicted methyltransferase [Clostridium kluyveri DSM 555] gi|219569898|dbj|BAH07882.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 266 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 102/241 (42%), Gaps = 9/241 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPP 98 + + + + G V A+ N I Q+ ++ N R + N P+ V Sbjct: 23 YRIRRKEFIIEGFRFVKEAI-NSEFYISQIFLSEYFTNREERFFLERNNKVKCPIYFVTD 81 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + + I E A + + L+ ++ D + DP N+G I+RSA A Sbjct: 82 EILRSISCTENPQG----IIAVVKNKELNIKDEQGFYILADRIQDPGNMGTIIRSAHASG 137 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GIITTK + ++ G++ +IP I+ NL + + + GF+ I S DS Sbjct: 138 ALGIITTKGTVDVYNEKTLRATMGSIFYIPIIQDENL-EKVSTLRQMGFKLISSSLDSDI 196 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 KI + +G EG GL ++ + ++ MPG ++LN + AA++ ++ Sbjct: 197 NFYDMDLRGKIIIAIGNEGNGLLQDVKKISDIEVNIPMPGNAESLNAAVAASIMMFEVVR 256 Query: 279 H 279 Sbjct: 257 Q 257 >gi|161507842|ref|YP_001577806.1| rRNA methylase [Lactobacillus helveticus DPC 4571] gi|160348831|gb|ABX27505.1| rRNA methylase [Lactobacillus helveticus DPC 4571] Length = 255 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 89/236 (37%), Gaps = 5/236 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQT 100 + + + G H A+ + +K LL T+ AL + + D ++ V + Sbjct: 23 YRDEEGRYLIEGFHLFDEAIKSG-QKYQYLLGTEEALDKAEEDYDVDLSGKNVILINKAI 81 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + + + + LL D++ DP N+G I+R+A A D Sbjct: 82 ARHLSSTKNSQEIFMVLKIDQPREFPFNYGKWVLL---DNLADPGNVGTIIRTADAAGFD 138 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++ + + + ++ G+ HI I+ + + + K L Sbjct: 139 GVVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLADVITDFQDAAIPVYASMLDKAAKQL 198 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K ++ALI+G E G+ + ++ + G ++LN + AA + +Y Sbjct: 199 PDFEKVPQLALIIGNEAHGVSSTIASLSDEKLYIPIKGKAESLNAAVAAGIMIYHF 254 >gi|326560889|gb|EGE11254.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 7169] gi|326570818|gb|EGE20843.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1] Length = 258 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 91/257 (35%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K + R + + GVH V A L + +L+ +++A + Sbjct: 5 SKDNPIIKHTHALLGHHRTRKKSRQTVIEGVHLVEAYLKQTP-AVHRLIVSESATVHDEV 63 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 L P + + + + +L + L++ D + D Sbjct: 64 LPLLSQIDPKQITIISDTLYQQIRTLGESISVMAVIDIPHRSLPTISGDCLIL--DGLQD 121 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 NIG +LR+A A +IT+ + S ++ GA I I + + Sbjct: 122 LGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHF---SISIYEHIAVNEILQ 178 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 SS + K + IA +LG EG+G+R + A L PG ++L Sbjct: 179 KLKTPLYATSSHTNKVIYDHDLTSPIAWVLGHEGQGVRDEFLNNA-IPIALPQPGGQESL 237 Query: 264 NVSNAAAVALYITQNHF 280 NV A +V Y Sbjct: 238 NVGIAGSVCFYEMLRQR 254 >gi|162149380|ref|YP_001603841.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Gluconacetobacter diazotrophicus PAl 5] gi|161787957|emb|CAP57557.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Gluconacetobacter diazotrophicus PAl 5] Length = 233 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 95/232 (40%), Positives = 130/232 (56%), Gaps = 2/232 (0%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 YG+H AAL NP R+I Q+LAT++ A L N P P ++ + G++AVH Sbjct: 2 YGLHPALAALGNPERRIRQILATEDGEAALRERLNAPLPMQPHRTDRARLESLCGRDAVH 61 Query: 112 QGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 QG+A+ L S + D L++LD V DP N+GAILRSA AF ++ +R +P Sbjct: 62 QGIAVLADALPSLAIEDVTGRPGPLLLLDQVTDPRNVGAILRSAAAFGAAAVVVMERNAP 121 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 E+ LAK+ASGALE +P + NL L + S F +GL + ++A Sbjct: 122 DETGALAKAASGALEIVPLGAVVNLARTLDALKSLDFWVVGLDAGGGILDGTSFGQRRVA 181 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 L+LGAEG GLR T+E +A L MPG +++LNVSNAAAVALY K Sbjct: 182 LVLGAEGDGLRRLTREHCDEIAGLAMPGDMESLNVSNAAAVALYELIR-RGK 232 >gi|146278291|ref|YP_001168450.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17025] gi|145556532|gb|ABP71145.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sphaeroides ATCC 17025] Length = 261 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 87/238 (36%), Positives = 135/238 (56%), Gaps = 8/238 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 +++R T+ E ++L+G+H V AL NPSR+ +L+ TKNA RL + V Sbjct: 13 KERARRTTAQETVWLFGIHAVRDALINPSREKLRLVLTKNAADRLGEAVA-AGGIEPEIV 71 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILR 152 P+ + + +VHQG ALE PL +L+ L+++LD V DPHN+GA+LR Sbjct: 72 DPRKFSAPIDEGSVHQGAALEVRPLDWGSLEDLAASGEGEPLVVLLDRVTDPHNVGAVLR 131 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA F ++ R+S E+ LAK+ASGALE PY+R+ NL + ++++ + G+ +GL Sbjct: 132 SAEVFGARAVVAPHRHSAPETGALAKTASGALERQPYLRVGNLAETMERLKAIGYMLLGL 191 Query: 213 SSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 S++ L + + L+LGAEG GLR KT++T + + G +LNVSN Sbjct: 192 DSEAPATLAEGLAIAGKRPVGLVLGAEGPGLRDKTRDTCDVLVRIPAAGGFGSLNVSN 249 >gi|189183948|ref|YP_001937733.1| tRNA/rRNA methyltransferase, TrmH family [Orientia tsutsugamushi str. Ikeda] gi|189180719|dbj|BAG40499.1| tRNA/rRNA methyltransferase, TrmH family [Orientia tsutsugamushi str. Ikeda] Length = 266 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 124/233 (53%), Gaps = 6/233 (2%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 ++ +++G H AALNNP R I + T++ L K V + + +++ Sbjct: 28 KKSYYIFGTHASLAALNNPLRVIRYIYCTESCFLSLSKLI---QKHDYKIVTTKFLHQLL 84 Query: 106 GKEAVHQGLALETAPLLSP---TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 G + VHQG+A+ T PL +D + + +LD + D +N+GAI+RSA AF+ I Sbjct: 85 GSQIVHQGIAVNTIPLTINGIKHIDLATPNYKIAILDQLLDHNNLGAIIRSAAAFNISTI 144 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + S E+ +AK A GALE I +++ NL + + + +GF IGL ++ L + Sbjct: 145 ILPENNSIEENGTIAKIAVGALEKINLVKVKNLYNTINYLKKYGFWIIGLDLNNSNQLTE 204 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + K+A +LG+E KGLR T++ + + M ++LNV+ AA + Y Sbjct: 205 QTFHSKMAFVLGSENKGLRNLTRQQCDFLIKIPMSHKTESLNVAGAATIIFYE 257 >gi|119476215|ref|ZP_01616566.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium HTCC2143] gi|119450079|gb|EAW31314.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium HTCC2143] Length = 255 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 106/252 (42%), Gaps = 15/252 (5%) Query: 38 QKSRHTSQPENLF-----LYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLP 88 S++ Q + F +YG V AL + + +++L + + Sbjct: 2 NDSKNYQQKKRFFNDLLTIYGRKPVLEALEDSTMSLYKLHLADSNKSGGIIAEIIKLAEK 61 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL------LMVLDHVN 142 ++ +++ +I QG+A + +LD + L+ LD++ Sbjct: 62 RGVEIQWHDRKSLSRISRNSKQDQGVAADIKVDKHQSLDHYLQQKTNERSLRLIALDNIT 121 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 +P N+G I+RS A + DG+I ++ + S ++ K++ G + P + L L + Sbjct: 122 NPQNVGMIIRSVCAGNIDGLIIPRKGCAALSPLVIKASVGTVFKAPLLHCETLAQGLGAL 181 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 LSS +K+ L + + ILG E +G+ + Q+ + + M +++ Sbjct: 182 RDRDVTICTLSSHAKQSLFEYQAQQSVVYILGNETEGVSEEVQKLSDQQLSIPMNNGVES 241 Query: 263 LNVSNAAAVALY 274 LNV+ AA+ + Sbjct: 242 LNVAVTAALIAF 253 >gi|170781630|ref|YP_001709962.1| putative rRNA methylase [Clavibacter michiganensis subsp. sepedonicus] gi|169156198|emb|CAQ01340.1| putative rRNA methylase [Clavibacter michiganensis subsp. sepedonicus] Length = 266 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 95/262 (36%), Gaps = 9/262 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 + + K + L G VS AL + +L AT AL R Sbjct: 5 PRSPRVRGVAKLA-KRDARADTGLFLLEGPQAVSEALAFRPDLVQELFATPTALDRYPDL 63 Query: 85 AN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 A V+ V I + + + S L+ +L+ V Sbjct: 64 ARAVRESGIEVEFVTEDVIASMADTVTPQGVVGVCRQFPTSLKQILGDEPLLIAILEEVR 123 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N G I+R+A A D +I T R + + ++ +G+L H+P + L L+++ Sbjct: 124 DPGNAGTIIRAADAAGADAVILTGRSVDLYNPKVVRATTGSLFHLPVAIMPELDAVLERV 183 Query: 203 HSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + G Q + A + G E +GL+ + A + + G Sbjct: 184 RAAGLQVLAADVKGDDLLAERTSGGLAGPTAWLFGNEARGLQDEHLALADRAVVVPIYGQ 243 Query: 260 IKALNVSNAAAVALYI---TQN 278 +++N++ AA+V LY Q Sbjct: 244 AESMNLATAASVCLYESAFAQR 265 >gi|315224741|ref|ZP_07866564.1| TrmH family RNA methyltransferase [Capnocytophaga ochracea F0287] gi|314945369|gb|EFS97395.1| TrmH family RNA methyltransferase [Capnocytophaga ochracea F0287] Length = 248 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 44/253 (17%), Positives = 93/253 (36%), Gaps = 21/253 (8%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K +Q QK ++ ++ + G ++ L R +LL A Sbjct: 6 QVKLIQKLQQK-KYRNELNLFIVEGKKSIVEFLQAGYR--LELLIATEVF------ATAL 56 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + P+ V + + K+ + +GLA+ L +++ LD+V DP N+G Sbjct: 57 NSQPITLVSKEELRKVSSLKNPDEGLAIFHQRQHKGIL----QEGVILALDNVQDPGNLG 112 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++R F + +I + + + ++ G+L + + + Sbjct: 113 TLIRLCDWFGIETLICNSQTVDCYNPKVVQATMGSLTRVAVHYVDL-----AGFLATCAL 167 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNV 265 + + L + LILG E G+ P+ + A + + G ++LNV Sbjct: 168 PLYAMDLDGENLYTTEFPEDCVLILGNEANGISPEVRALADGIITIPRFGKLQQTESLNV 227 Query: 266 SNAAAVALYITQN 278 + A A+ + + Sbjct: 228 AMAGAIVVSQVRK 240 >gi|83644548|ref|YP_432983.1| rRNA methylases [Hahella chejuensis KCTC 2396] gi|83632591|gb|ABC28558.1| rRNA methylases [Hahella chejuensis KCTC 2396] Length = 238 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 107/234 (45%), Gaps = 8/234 (3%) Query: 55 HTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 H V A L KI +LL + + P V +DK Sbjct: 2 HAVRALLQKHPGKIDRLLLSEQRHDHRLQEIAQLAQERRVPFSQVGKSALDKAADGAHQG 61 Query: 112 QGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 L+ + + T L+ + LL+VLD V DPHN+GA LRSA A +I K Sbjct: 62 VVAYLKADRMSNETDLEELLEKLEEPALLLVLDGVTDPHNLGACLRSANAAGVHAVIVPK 121 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 S +A K A GA E P IR++NL L+ + ++G +G + ++++ L Q Sbjct: 122 DKSAPLNAAARKVACGAAEVTPLIRVTNLARTLKHIQTYGVWLVGAAGEAEQSLYQADLK 181 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A+++GAE KG+R T+E S+ ++ M G + +LNVS A V L+ Sbjct: 182 GSVAIVMGAEDKGMRRLTRENCDSLVNIPMLGEVSSLNVSVATGVCLFEAVRQR 235 >gi|78212686|ref|YP_381465.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605] gi|78197145|gb|ABB34910.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605] Length = 542 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 74/290 (25%), Positives = 132/290 (45%), Gaps = 20/290 (6%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL-------FLYGVHTVSAA 60 ++++ + S + + + R + + + ++G H AA Sbjct: 172 RNDRYGDRRRSGDERRQPSQRSRSRFDEARPQRPDAAPEAAAATPPADDLIWGRHATQAA 231 Query: 61 LNNPSRKIFQLLATKNALA--RLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 L R I ++ T + + V+ V + +I G +VHQG+AL Sbjct: 232 LEAG-RPIHRIWCTAEMRSASKFLQLLRDAKASGVLVEEVTWARLGQITG-GSVHQGIAL 289 Query: 117 ETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 +TA + LD++ LL+ LD V DPHN+GA++RSA A G++ +R S Sbjct: 290 QTAAAETLDLDSLIEGCSDLGEPPLLVALDGVTDPHNLGAVVRSAEAMGAHGVVIPQRRS 349 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + AK A+GALEH+P R+ NL +L+K+ G++ +GL+++ L + + Sbjct: 350 AGLTGSAAKVAAGALEHLPVARVVNLNRSLEKLKDAGYRVVGLAAEGDVTLTDVDLSGPM 409 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G+E +GL T+ + + + GI +LN S A A+ +Y Sbjct: 410 VLVTGSEDQGLSLMTRRHCDQLVRIPLRGITPSLNASVATALCVYEVARR 459 >gi|118586223|ref|ZP_01543687.1| rRNA methylase [Oenococcus oeni ATCC BAA-1163] gi|118433339|gb|EAV40041.1| rRNA methylase [Oenococcus oeni ATCC BAA-1163] Length = 255 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 54/278 (19%), Positives = 118/278 (42%), Gaps = 24/278 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ ++ ++ + + L G H V A Sbjct: 1 MEIITSNQNSRVKIWTSLQTL-------------------KGREKSGTYMLDGWHLVQDA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L N + I ++AT+ + + D P P V + + + + K QG+ +T+ Sbjct: 42 L-NQAAPIQAVIATEEQMDQHLIDV--PQGVPAFQVS-EEVARHIAKTNTPQGIFAQTSL 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + ++ ++LD + DP N+G ++R+A A G+ +K + + + ++ Sbjct: 98 PNNSFDPKYVHNGSWLLLDRIQDPGNVGTLIRTADAAGFSGVALSKESADPFNPKVVRAM 157 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+ ++ +L D + K+ + + G + S++ + + ALILG EG+G Sbjct: 158 QGSQFHLKLVKEVDLNDWVDKLEANDYNVYGSTLSENSVDYKTVVPEKNFALILGNEGQG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + P+ Q + H++ G ++LNV+ A + ++ Sbjct: 218 IDPEIQAKTSENLHINFLGKAESLNVAVAGGILMFALN 255 >gi|116618817|ref|YP_819188.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097664|gb|ABJ62815.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 257 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 101/255 (39%), Gaps = 5/255 (1%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 + + K K + + L G+H V A+ + K ++AT+ +A Sbjct: 2 ERIISNQNARVKAWAKLATK-KGRQENHTYLLDGLHLVEEAVKAGA-KFHAIMATEKQMA 59 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 N+PH P + + I G QG+ E + + + ++LD Sbjct: 60 DYLP--NVPHGVPAFEISEEVAKHIAG-TNTPQGIFAEISLPEKTFDPSYVHDGAWLLLD 116 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N+G ++R+A A G++ + + + + ++ G+ H+ + Sbjct: 117 KIQDPGNVGTLVRTADAAGFKGVVLGAGTADAFAPKVVRAMQGSQFHLEVLNGDLSEWVA 176 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + ++ K + + LI+G EG+G+ + E T+ ++ + G Sbjct: 177 ALATNNLPVYGSQLNEKAKSYRDVEPSTQFGLIVGNEGQGMSAELAEKTTANLYIPIQGQ 236 Query: 260 IKALNVSNAAAVALY 274 ++LNV+ A + ++ Sbjct: 237 AESLNVAIAGGILMF 251 >gi|150025415|ref|YP_001296241.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149771956|emb|CAL43430.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 244 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 114/240 (47%), Gaps = 13/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107 ++G+ + A+ N ++I ++ +A + L + + VP + ++++ Sbjct: 7 IFGIRAIIEAI-NAKKEIDKVFIQSDAQSELMQELQKLMKKNSINFSYVPVEKLNRLT-- 63 Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG AP+ L+ L ++LD ++D N GAI+R+A D Sbjct: 64 PNNHQGAVATIAPIAFQDLEKLIDTVIESGKKPLFLILDQLSDARNFGAIIRTAECTGVD 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K+ S + K+++GA+ ++P ++ ++ DA+ + + G +T+ + ++ + Sbjct: 124 GIIVQKQGSAPVNGDTVKTSAGAVFNVPICKVDHIKDAIFLLQASGIKTVAATEKTESNI 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 N+ +A+I+G+E +G+ P + A L M G I +LNVS A LY T Sbjct: 184 YDISLNEGVAIIMGSEDRGVNPSVLKIVDEKAKLPMFGTIGSLNVSVACGAFLYETVRQR 243 >gi|302383631|ref|YP_003819454.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides ATCC 15264] gi|302194259|gb|ADL01831.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides ATCC 15264] Length = 265 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 86/253 (33%), Gaps = 5/253 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K +++ + + + G+ + AL+ ++ + L A Sbjct: 11 NDTVKGIRALHMR-KEREVTGQFLAEGLKFIGEALDQGRAPRLLMVGMEARPHPLLDRAK 69 Query: 87 ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 L + TV ++KI +E L + ++ + L+ V D Sbjct: 70 AATLEAGGEIVTVTHPILEKISRRENPQTVLGVFDQAYTRLDQLDPASASCWIALEQVRD 129 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+R+A A C G+I S ++ G++ I + L Sbjct: 130 PGNLGTIIRTADAAGCGGVILIGDCVDPFSVEAVRATMGSVF-AVAIVRCTVEAFLAWRT 188 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 +W +G D+ + +++G E GL + M G +L Sbjct: 189 AWPGSVVGTRLDATVSYREAAYAGPTLILMGNEQAGLTDGLAAACDVNVKIPMRGRADSL 248 Query: 264 NVSNAAAVALYIT 276 N++ A + Y Sbjct: 249 NLAIATGIMAYAV 261 >gi|259505627|ref|ZP_05748529.1| rRNA methylase [Corynebacterium efficiens YS-314] gi|259166792|gb|EEW51346.1| rRNA methylase [Corynebacterium efficiens YS-314] Length = 272 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 97/255 (38%), Gaps = 7/255 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 K+ + G ++V AA+ + L T+ A + + Sbjct: 14 PRIVNAAKLL-KTAQRKKTHQFLAEGENSVEAAIATGAATD--LFVTEQAAEKFEEIVRT 70 Query: 88 PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V T + + + AL L + S+L+ V +P Sbjct: 71 AGYMNVYTHPITDRAAKSLSDTVTTTGIFALCNDVLWTVGKAVNSRSRLVSVPVETREPG 130 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G ++R A A D ++ + + ++++G+L H+P R N+ D L ++ S Sbjct: 131 NAGTLIRVADAVGADAVVFAGETVDPQGPKVVRASAGSLFHVPVARNVNIDDVLGQLRSQ 190 Query: 206 GFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G Q + ++D + L+ + A + G E GL + A + + G ++L Sbjct: 191 GLQILATAADGEVDLDDAGELLSRPTAWLFGNEAHGLGEELLAKADHRVRIPIRGRAESL 250 Query: 264 NVSNAAAVALYITQN 278 N++ AA++ LY + Sbjct: 251 NLATAASICLYESSK 265 >gi|33519562|ref|NP_878394.1| tRNA/rRNA methyltransferase [Candidatus Blochmannia floridanus] gi|52783302|sp|Q7VQP0|RLMB_BLOFL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|33517225|emb|CAD83607.1| probable tRNA/rRNA methyltransferase [Candidatus Blochmannia floridanus] Length = 254 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 63/245 (25%), Positives = 114/245 (46%), Gaps = 12/245 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + +YG+HTV + +N +I + ++ + ++ + ++ I Sbjct: 2 SELVYGIHTVESIVNQSPNRILIVYIVSNPRDLRLKSLIYRIRKMNINIQECTRRVLN-I 60 Query: 105 VGKEAVHQGLALETAPLLSPTLDA--------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 ++ HQG+ E P+ + D LL+VLD + DPHN+GA +RSA A Sbjct: 61 KSMKSAHQGIIAEVIPMPALNEDYLLHFLKTKNNIIPLLLVLDGITDPHNLGACIRSADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 II + S + +A + K ASG+ + +P++R++NL+ L+ + + +G S Sbjct: 121 AGVHMIIVPRDRSANVNATVRKVASGSSDRVPFVRVTNLSRTLKLLKKYNIYIVGSVLRS 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + L D IAL++G+E G+R T+E + H+ +LNVS A + L+ T Sbjct: 181 NQILFNTRLIDPIALVMGSESSGIRRLTRENCDKLVHIPTLQSTVSLNVSVATGIFLFET 240 Query: 277 QNHFA 281 Sbjct: 241 VRQRK 245 >gi|25028075|ref|NP_738129.1| putative tRNA/rRNA methyltransferase [Corynebacterium efficiens YS-314] gi|23493359|dbj|BAC18329.1| putative tRNA/rRNA methyltransferase [Corynebacterium efficiens YS-314] Length = 282 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 97/255 (38%), Gaps = 7/255 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 K+ + G ++V AA+ + L T+ A + + Sbjct: 24 PRIVNAAKLL-KTAQRKKTHQFLAEGENSVEAAIATGAATD--LFVTEQAAEKFEEIVRT 80 Query: 88 PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V T + + + AL L + S+L+ V +P Sbjct: 81 AGYMNVYTHPITDRAAKSLSDTVTTTGIFALCNDVLWTVGKAVNSRSRLVSVPVETREPG 140 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G ++R A A D ++ + + ++++G+L H+P R N+ D L ++ S Sbjct: 141 NAGTLIRVADAVGADAVVFAGETVDPQGPKVVRASAGSLFHVPVARNVNIDDVLGQLRSQ 200 Query: 206 GFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G Q + ++D + L+ + A + G E GL + A + + G ++L Sbjct: 201 GLQILATAADGEVDLDDAGELLSRPTAWLFGNEAHGLGEELLAKADHRVRIPIRGRAESL 260 Query: 264 NVSNAAAVALYITQN 278 N++ AA++ LY + Sbjct: 261 NLATAASICLYESSK 275 >gi|282852715|ref|ZP_06262057.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri 224-1] gi|282556457|gb|EFB62077.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri 224-1] Length = 275 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 13/240 (5%) Query: 46 PENLFLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + F+YG H L N K+F + A + V+ P + Sbjct: 4 NNDEFVYGRHAGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKL 63 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSA 154 D++V E HQGL L AP LD +++LD + DPHN+G+ILR+ Sbjct: 64 DQMVNHE-NHQGLVLTVAPFEYADLDELLDKFDQDGKDPFILMLDSIEDPHNLGSILRTC 122 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A D +I KR + ++V+AK+++GA++++P R++NL + + G+ G + Sbjct: 123 DATGVDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKLLKKRGYWIFGTAM 182 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + N K L++G EGKG+ P + + M G +++LN S A V LY Sbjct: 183 EGEDYRKWN-ANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241 >gi|261749353|ref|YP_003257038.1| putative tRNA:rRNA methyltransferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497445|gb|ACX83895.1| putative tRNA:rRNA methyltransferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 249 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 102/244 (41%), Gaps = 16/244 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLAT------KNALARLDWDANLPHPFPVKTVPPQTIDK 103 +YG+H + A+ + R I +L N + + P+ VP + Sbjct: 6 IIYGIHPLIEAIQS-KRSISKLFFQIGWKKKCNPYYKKLISLSKRENIPIHIVPKNKFHQ 64 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ +P+ + +++ + LL++LD + D N G+I+R+A Sbjct: 65 L--NNKNHQGVFALLSPIETYSIEDLLPIFYEKGKNPLLLILDRITDVRNFGSIIRTAAC 122 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II +Y+ + K++SGAL +P + N+ ++ + G + + + S Sbjct: 123 AGVDAIIIPNKYTAMICSDSIKTSSGALFKVPICQEKNIKKTIEYLMKSGLKIVSATEKS 182 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + A+ILG E G+ PK E A + I +LNVS A + LY Sbjct: 183 NIYWYKIDFSGPTAIILGNESNGICPKYLEITYEKAKIPAIHGISSLNVSVACGIILYEV 242 Query: 277 QNHF 280 Sbjct: 243 FRQR 246 >gi|225023123|ref|ZP_03712315.1| hypothetical protein CORMATOL_03172 [Corynebacterium matruchotii ATCC 33806] gi|224944346|gb|EEG25555.1| hypothetical protein CORMATOL_03172 [Corynebacterium matruchotii ATCC 33806] Length = 308 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 53/284 (18%), Positives = 104/284 (36%), Gaps = 21/284 (7%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I + D +L D++ ++ + + + G + L + L Sbjct: 26 ITHISDPTDPRLD----DFRDLKHSDNRPDLPGGKGLVIAEGP-LIVERLLASRYPVRTL 80 Query: 72 LATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-D 127 + L + A+L ++ +T+ ++ G + +H+GL +L + Sbjct: 81 VGFPAKLDKFLSQPHIADLAAGIDTYSLDRETLAQVAGYD-MHRGLLAAANRAPELSLSE 139 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++ + ++VL+ V D NIG+I R+A D I+ + + + G + + Sbjct: 140 VIKTATTVVVLEGVGDHENIGSIFRNAAGLGVDAILFGNGCADPLYRRSVRVSMGHVLRL 199 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-----------KIALILGAE 236 P+ ++ + + KIAL++GAE Sbjct: 200 PHASFEGKHTNWHYGLDQLKESGFQLVSLTPHEDAVPLDQALYDGNGVPYEKIALLVGAE 259 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G GL +T A + M +LNV+ AAA+ALY Q Sbjct: 260 GPGLTERTMRRTDIRARIPMSAGTDSLNVATAAAIALYERQRGR 303 >gi|116629012|ref|YP_814184.1| rRNA methylase [Lactobacillus gasseri ATCC 33323] gi|238853166|ref|ZP_04643553.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri 202-4] gi|311111192|ref|ZP_07712589.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri MV-22] gi|116094594|gb|ABJ59746.1| rRNA methylase [Lactobacillus gasseri ATCC 33323] gi|238834220|gb|EEQ26470.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri 202-4] gi|311066346|gb|EFQ46686.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri MV-22] Length = 251 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 13/240 (5%) Query: 46 PENLFLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + F+YG H L N K+F + A + V+ P + Sbjct: 4 NNDEFVYGRHAGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKL 63 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSA 154 D++V E HQGL L AP LD +++LD + DPHN+G+ILR+ Sbjct: 64 DQMVNHE-NHQGLVLTVAPFEYADLDELLDKFDQDGKDPFILMLDSIEDPHNLGSILRTC 122 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A D +I KR + ++V+AK+++GA++++P R++NL + + G+ G + Sbjct: 123 DATGVDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKLLKKRGYWIFGTAM 182 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + N K L++G EGKG+ P + + M G +++LN S A V LY Sbjct: 183 EGEDYRKWN-ANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241 >gi|227487737|ref|ZP_03918053.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227542376|ref|ZP_03972425.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51866] gi|227092239|gb|EEI27551.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181574|gb|EEI62546.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51866] Length = 276 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 96/277 (34%), Gaps = 13/277 (4%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I + D + +L DY+ + + + + G V L + + Sbjct: 4 IIRIDDPNDPRLD----DYRDLNHSDTRPDLPGGKGLVIAEG-SLVIPRLLESRFPVRSI 58 Query: 72 LATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 L + L L + PV V + + ++ G + +A + V Sbjct: 59 LGFQPKLDSLLAALGDAGANDVPVYEVTREVLAEVAGFDMHRGLVAAADRAPEYSVGEVV 118 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + L +L+ V D NIG+I R+A DG++ + + + + G + +PY Sbjct: 119 DGASTLCILEGVGDHENIGSIFRNAAGLGIDGVLFGAGCADPLYRRVVRVSMGHVLRLPY 178 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK------NDKIALILGAEGKGLRPK 243 + T Q ++ + E K A+++GAEG GL Sbjct: 179 AHMEGKTTNWQHGLAYLQEKGFQIIALTPNPEAANLQDVIDPTKKTAILVGAEGPGLTEH 238 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M +LNV+ AAA+ Y H Sbjct: 239 AMRATDVRARIPMQPGTDSLNVATAAAIGFYEALRHR 275 >gi|256788794|ref|ZP_05527225.1| rRNA methylase [Streptomyces lividans TK24] gi|289772688|ref|ZP_06532066.1| rRNA methylase [Streptomyces lividans TK24] gi|289702887|gb|EFD70316.1| rRNA methylase [Streptomyces lividans TK24] Length = 282 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 91/266 (34%), Gaps = 9/266 (3%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 + + +++ + G V A + +L AT A R Sbjct: 9 ISPRSPRVAAARRLGKRN-FRGKERLFLAEGPQAVREAAGYGDTLV-ELFATVEAAERYA 66 Query: 83 WDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 V I+ I + + +L+ VL H Sbjct: 67 DIVGAAREVGARVHLAADAVIEDISTTVTPQGLVGVCRFLDTPFDEILAARPKLVAVLAH 126 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N G +LR A A + ++ T + +++ G+L H+P + A+ Sbjct: 127 VRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLFHLPVAVGVPVERAVA 186 Query: 201 KMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + G + + + L+ E A + G E GL +T+ ++ + + Sbjct: 187 GLREAGVRVLAADGAGEDDLDTELDGGTMRGPTAWVFGNEAWGLPEETRALTDAVLRVPI 246 Query: 257 PGIIKALNVSNAAAVALYITQN-HFA 281 G ++LN++ AAAV LY + A Sbjct: 247 HGKAESLNLATAAAVCLYASARAQRA 272 >gi|149003632|ref|ZP_01828497.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP14-BS69] gi|147758364|gb|EDK65364.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP14-BS69] Length = 236 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 95/247 (38%), Gaps = 13/247 (5%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 K + QK ++ + G H A+ I ++ A +N +L + Sbjct: 2 VKNAKKLRQK-KYRKSA--YLIEGWHLFEEAVQAGVT-IEKIFALENYRDQLATFSQT-- 55 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 V + + + QG+ D + L + + V DP N+G Sbjct: 56 ----VWVSEDILLDLADSQ-TPQGIVAVVQKEEVGQADLSQGKFLFL--EDVQDPGNVGT 108 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A G+I + + + S +S G+ H+P R+++ + Sbjct: 109 IIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVL 168 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 S + + L++G EG+G+ P E+A + H+ M G ++LNV+ AA Sbjct: 169 ATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAA 228 Query: 270 AVALYIT 276 + ++ Sbjct: 229 GILIFHL 235 >gi|118464222|ref|YP_882308.1| TsnR protein [Mycobacterium avium 104] gi|254775574|ref|ZP_05217090.1| TsnR protein [Mycobacterium avium subsp. avium ATCC 25291] gi|118165509|gb|ABK66406.1| TsnR protein [Mycobacterium avium 104] Length = 263 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 91/238 (38%), Gaps = 5/238 (2%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + G + V AA + + T+ A R PV + + Sbjct: 21 RRRAARFLAEGPNLVEAA--AGRGLVRDVFVTEAAQQRYAPLLAAL-DCPVHLITERAAK 77 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A+ P + +L+ V +++P N G ++R + A G+ Sbjct: 78 ALSDTVTPAGLVAVCDLPATGLRDVLAGSPRLIAVAVQISEPGNAGTLIRLSDAMGAAGV 137 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + + ++++G++ +P + +L +A+ + G Q + + D + L++ Sbjct: 138 LLAGHSVDPYNGKCLRASAGSIFSVPVVAAPDLREAVAAVREAGLQLLATTVDGEVRLDR 197 Query: 223 EI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + G E GL + A + M G ++LNV++AAA+ LY + Sbjct: 198 AGELLAKPTAWLFGPESHGLPSEVAAAADHRVRIPMAGGAESLNVASAAAICLYQSAR 255 >gi|304391896|ref|ZP_07373838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Ahrensia sp. R2A130] gi|303296125|gb|EFL90483.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Ahrensia sp. R2A130] Length = 287 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 109/235 (46%), Positives = 153/235 (65%), Gaps = 7/235 (2%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-PFPVKTVPPQTIDKIV 105 EN++LYGVHTV AAL NP RK+ QLLAT + + RLD +A H ++ +D++V Sbjct: 44 ENVWLYGVHTVDAALRNPKRKVRQLLATDSGMERLDHNALAQHPDLDIRIGKTADLDRMV 103 Query: 106 GKEAVHQGLALETAP---LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 ++VHQGL L+ P L + Q+++VLD V DPHN+GAILRSAVA + Sbjct: 104 TADSVHQGLLLDCEPLLREEPKDLYDFADDQIILVLDQVTDPHNVGAILRSAVAMGVKTV 163 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK---KP 219 + T R+ SE+ VLAKSASGA++ + + I NL+ +L ++ F IGL S+ + Sbjct: 164 LVTSRHQSSETGVLAKSASGAVDMVDMLAIRNLSKSLDELREHRFAVIGLDSEGPLEVQE 223 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++K K+AL+LGAEGKGLR +T+E T++A L MPG IK+LNVSNAAA++LY Sbjct: 224 TLDDLKPSKVALVLGAEGKGLREQTREACTALARLDMPGPIKSLNVSNAAALSLY 278 >gi|227431096|ref|ZP_03913154.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353136|gb|EEJ43304.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 257 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 101/255 (39%), Gaps = 5/255 (1%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 + + K K + + L G+H V A+ + K ++AT+ +A Sbjct: 2 ERIISNQNARVKAWAKLATK-KGRQENHTYLLDGLHLVEEAVKAGA-KFHAIMATEKQMA 59 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 N+PH P + + I G QG+ E + + + ++LD Sbjct: 60 DYLP--NVPHGVPAFEISEEVAKHIAG-TNTPQGIFAEISLPEKTFDPSYVHDGAWLLLD 116 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N+G ++R+A A G++ + + + + ++ G+ H+ + Sbjct: 117 KIQDPGNVGTLVRTADAAGFKGVVLGAGTADAFAPKVVRAMQGSQFHLEVLNGDLSEWVA 176 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + ++ K + + LI+G EG+G+ + E T+ ++ + G Sbjct: 177 ALAANNLPVYGSQLNEKAKSYRDVEPSTQFGLIVGNEGQGMSAELAEKTTANLYIPIQGQ 236 Query: 260 IKALNVSNAAAVALY 274 ++LNV+ A + ++ Sbjct: 237 AESLNVAIAGGILMF 251 >gi|78042655|ref|YP_360402.1| RNA methyltransferase, TrmH family protein [Carboxydothermus hydrogenoformans Z-2901] gi|77994770|gb|ABB13669.1| RNA methyltransferase, TrmH family protein [Carboxydothermus hydrogenoformans Z-2901] Length = 258 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 45/261 (17%), Positives = 90/261 (34%), Gaps = 8/261 (3%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 + YK+++ Q S + + G V + + + +++ A Sbjct: 3 KKISSPENSFYKELKKLYQDSAFRRKNGMFIVEGEKLVFELITDNWPLKYLVVSESYWQA 62 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 + D + + Q +KI LA+ LS +VLD Sbjct: 63 KKIDD----DGVKIVVLTDQLFNKISELVTPPGILAVACMKSLSWPAGKDGA---FLVLD 115 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N+G +LR+A F G+I + + ++++G + + Sbjct: 116 GLQDPGNVGTLLRAAFGFGVSGVILLPPAVDIYNPKVIRASAGTAF-KFPVLRMEADELK 174 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + S+ PL K + +G EG+G+ + + MPG Sbjct: 175 DIILKNNIPLFLAESEGGIPLTAIDFPAKFFVAVGNEGQGISTTLKSLPHQKISIPMPGK 234 Query: 260 IKALNVSNAAAVALYITQNHF 280 I++LN + A + +Y + Sbjct: 235 IESLNAALAGGIIIYEWAKNR 255 >gi|312869725|ref|ZP_07729872.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus oris PB013-T2-3] gi|311094774|gb|EFQ53071.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus oris PB013-T2-3] Length = 248 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 11/246 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 F+ G H AL K+F K V TVP + Sbjct: 2 KTENTDFIIGRHPAVMALKADQEINKVFVQAGLKADAIAEIIKLAKQKRLVVSTVPKTKL 61 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSA 154 D++ + HQG+AL A LD ++LD + DPHN+G+I+R+A Sbjct: 62 DQLTDHQ-NHQGVALAVAAYQYADLDDLFANAAQKHEDPFFLILDELEDPHNLGSIIRTA 120 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A GII +R + ++V+AK+++GALEH+P R++NL K + + Sbjct: 121 DAAGVHGIIIPRRRAVGLTSVVAKTSTGALEHVPVARVTNL-VQTAKELKDRGVWLFGTD 179 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +AL++G EGKG+ P +++ M + M G +++LN S AA++ +Y Sbjct: 180 MKGRDYRTWDAHGAVALVIGNEGKGISPLLKKSCDEMLTIPMIGHVQSLNASVAASLLIY 239 Query: 275 ITQNHF 280 N Sbjct: 240 QGFNSR 245 >gi|255022090|ref|ZP_05294094.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Acidithiobacillus caldus ATCC 51756] gi|254968448|gb|EET26006.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Acidithiobacillus caldus ATCC 51756] Length = 250 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 117/240 (48%), Gaps = 9/240 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTVPPQTIDK 103 + GVH V+AA++ ++ QL + A H + I++ Sbjct: 3 EDWAIGVHAVAAAIDAG--EVEQLWVAREREEDRRIREVVAAAELHGIRPRWAATAEINR 60 Query: 104 IVGKEAVHQGLALETAPLLS---PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + G +A A L+ + LL++LD + DPHN+GA LRSA A + Sbjct: 61 LGGGPQHQGLVARLLARPAPTLAQVLEDIPAPGLLLILDGILDPHNLGACLRSAEAAGAN 120 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ K ++ +A + K+A+GA +P + ++NL ++ + +G+ GL+ ++ + L Sbjct: 121 AVVLPKDHACPVNATVRKAAAGAASRLPIVVVTNLVRSMVGLQEYGYWIAGLAGEASQDL 180 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL+LG+E KGLR +E + H+ M G +++LNVS A A+AL+ + Sbjct: 181 YEADLRGPLALVLGSEEKGLRRLVREHCDFLWHIPMCGAVESLNVSVAGALALFEARRQR 240 >gi|305682031|ref|ZP_07404835.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii ATCC 14266] gi|305658504|gb|EFM48007.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii ATCC 14266] Length = 285 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 99/283 (34%), Gaps = 19/283 (6%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I + D +L D++ ++ + + + G + L + L Sbjct: 3 ITHISDPTDPRLD----DFRDLKHSDNRPDLPGGKGLVIAEGP-LIVERLLASRYPVRTL 57 Query: 72 LATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 + L + A+L ++ +T+ ++ G + LA + Sbjct: 58 VGFPAKLDKFLSQPHIADLAAGIDTYSLDRETLAQVAGYDMHRGLLAAANRAPELGLSEV 117 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 ++ + ++VL+ V D NIG+I R+A D I+ + + + G + +P Sbjct: 118 IKTATTVVVLEGVGDHENIGSIFRNAAGLGVDAILFGNGCADPLYRRSVRVSMGHVLRLP 177 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-----------KIALILGAEG 237 + ++ + + KIAL++GAEG Sbjct: 178 HASFEGKHTNWHYGLDQLKESGFQLVSLTPHEDAVPLDQALYDGNGVPYEKIALLVGAEG 237 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 GL +T A + M +LNV+ AAA+ALY Q Sbjct: 238 PGLTERTMRRTDIRARIPMSAGTDSLNVATAAAIALYERQRGR 280 >gi|289705925|ref|ZP_06502302.1| RNA methyltransferase, TrmH family, group 3 [Micrococcus luteus SK58] gi|289557353|gb|EFD50667.1| RNA methyltransferase, TrmH family, group 3 [Micrococcus luteus SK58] Length = 329 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 70/294 (23%), Positives = 121/294 (41%), Gaps = 21/294 (7%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ +H AK K+ + R + + + G + V AL Sbjct: 37 TPKAEDRVYH--KAHRAKQLAERSAAKR-GPVTDQVRGRVKLTDETVSGRNPVLEALRAG 93 Query: 65 ---SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 + + + L PV +D++ G EAVHQG+ L+ P Sbjct: 94 IPAKALHVAVRIEMDDRVKEALRLCLEQGVPVLENTKPELDRLSG-EAVHQGIVLQIPPY 152 Query: 122 LS-------------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 +R LL+ LD + DP N+GAI+R+ AF DG+I +R Sbjct: 153 EYADATALALDALAKHEKGHLRTPPLLIALDGITDPRNLGAIIRAGSAFDADGVIVPERR 212 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-ND 227 S +A ++++GA +P + NL L +H G+ +GL L + Sbjct: 213 SVGVTATAWRTSAGAAARVPVAQAGNLNTTLVDLHKAGYFVLGLDGGGDVSLPGLALATE 272 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + L++GAEGKGL +E + + + +++LN S A ++LY A Sbjct: 273 PLVLVVGAEGKGLSRMVREHCQQIVSIPIDSTMESLNASMAVGISLYEISVQRA 326 >gi|332652352|ref|ZP_08418097.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16] gi|332517498|gb|EGJ47101.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16] Length = 278 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 96/261 (36%), Gaps = 9/261 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ +S+ + +S AL + + L +++ A Sbjct: 18 YTQLTHAQLRSQRDPEKGIFIAESGKVISCALKAGCQPLSCLTESRHLPALTQLLPPPWD 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P+ T P + ++ G E L P L + R+++ L+VL+++ D NIGA Sbjct: 78 NIPIYTAPRDVLARLTGYELTRGMLCAMRRPPLPSPEEICRSARRLVVLENITDSTNIGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH------ 203 I RSA A DG++ + + + G + IP+ + + Sbjct: 138 IFRSAAALGMDGVLVSSSCCDPLYRRSVRVSMGTVFQIPWTWLHGDAFQWPQPGIATLRS 197 Query: 204 --SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + +K+A++LG+EG GL +T A + M + Sbjct: 198 LGFSTAAMALTDNSISIEDPVLADAEKLAIVLGSEGNGLCEETIAHCDYTARIPMYHGVD 257 Query: 262 ALNVSNAAAVALYITQNHFAK 282 +LNV+ A AV + K Sbjct: 258 SLNVAAAGAVIFWQL-RAREK 277 >gi|328949218|ref|YP_004366555.1| RNA methyltransferase, TrmH family, group 3 [Treponema succinifaciens DSM 2489] gi|328449542|gb|AEB15258.1| RNA methyltransferase, TrmH family, group 3 [Treponema succinifaciens DSM 2489] Length = 258 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 82/247 (33%), Gaps = 20/247 (8%) Query: 53 GVHTVSAALN----NPSRKI--FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 G H V + + ++I + + F V V + +D +V Sbjct: 8 GFHAVEEKVKLYSVSKPKEISLKIFYSKPGPRIKKIISLAKDSNFEVSLVNEKELDSMVS 67 Query: 107 ----KEAVHQGLALET---------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 H+G+ L L + + +++VLD V DPHN+GAILRS Sbjct: 68 SLPETARDHRGIILLVEGEKENSKNQIQLEQWITCCPENAVVIVLDSVTDPHNVGAILRS 127 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 F ++ S + + + A Sbjct: 128 CDQFGASLMVVPDHRSADINNNEIIARASAGASSWVDVAKVPNLVRAVQILKSAGFWIYG 187 Query: 214 SDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 +D+ + K +I+G+EG G+ QE + + G I +LNVS AA V Sbjct: 188 ADAGGTTLSKIKFPKKTCIIMGSEGSGIARLLQEQCDEIVSIPTCGKIDSLNVSVAAGVL 247 Query: 273 LYITQNH 279 LY Sbjct: 248 LYEAYRQ 254 >gi|319901467|ref|YP_004161195.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P 36-108] gi|319416498|gb|ADV43609.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P 36-108] Length = 267 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 90/248 (36%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + + ++R S + AL+ + L + + Sbjct: 17 FSTLTEAQLRNRLESDKGIFIAESPKVIKVALDTGYEPLALLCEQNHITGDAAYIIGRCG 76 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + G L P + ++++ +++++ V D NIGA Sbjct: 77 DIPVYTGSRDLLTTLTGYILTRGVLCAMRRPKPQNIKEVCQDARRIVIINGVVDTTNIGA 136 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T + + + G++ +P+ I N L + Sbjct: 137 IFRSAAALGIDAVLLTHNSCDPLNRRAVRVSMGSVFLVPWTWIDNSLSDLCGLGFRTVAM 196 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + K+A+I+G EG GL + A + + M + +LNV+ A+ Sbjct: 197 ALTENSIPIDNPILSSEPKLAIIMGTEGDGLPYEAITEADYVVRIPMSHGVDSLNVAAAS 256 Query: 270 AVALYITQ 277 A+A + + Sbjct: 257 AIAFWQLR 264 >gi|254821223|ref|ZP_05226224.1| TsnR protein [Mycobacterium intracellulare ATCC 13950] Length = 268 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 90/241 (37%), Gaps = 5/241 (2%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + G + V AA + + T+ A R PV V + Sbjct: 26 RRRAGRFLAEGPNLVEAASRRG--LVRDVFVTEVAEQRHASLLAGL-DCPVHPVTERAAK 82 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A+ P QLL V + +P N G ++R A A G+ Sbjct: 83 ALSDTVTPAGLVAVCDMPATHLDDVLAGAPQLLAVAVEIGEPGNAGTLIRLADAMGAAGV 142 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I R + ++++G++ +P + + A+ + + G Q + + D ++ L++ Sbjct: 143 ILGGRSVDPYNGKCLRASAGSIFCVPVVVAPDALAAVDAVRAAGLQALATTVDGERRLDE 202 Query: 223 EI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + G E GL + A + M G ++LNV++AAA+ LY + Sbjct: 203 AGELLGRPTAWLFGPESHGLPSEIASAADHRLRIPMSGGAESLNVASAAAICLYQSARAL 262 Query: 281 A 281 Sbjct: 263 K 263 >gi|297563234|ref|YP_003682208.1| RNA methyltransferase, TrmH family, group 3 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847682|gb|ADH69702.1| RNA methyltransferase, TrmH family, group 3 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 320 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 106/271 (39%), Gaps = 16/271 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLD 82 D Q+ + L G + V AL L + Sbjct: 47 RRPDSGGGARGPQQGERRRADASDLLVGRNPVVEALRAGMPATRLFLANSLDPDERVNEA 106 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAV----HQGLALETAPLLSPTLD-------AVRN 131 V V +D+ HQGLAL+ P + Sbjct: 107 ARIAGERGLDVLEVTKTELDRRCESNGQPGAAHQGLALQVRPYQYRAPEALLDTALESDT 166 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L++ LD V DPHN+GAI RSA AF+ G++ +R S + K+++G L +P + Sbjct: 167 PALIVALDGVTDPHNLGAIARSAAAFNAHGLLIPERRSAGVNLTAWKTSAGTLARLPVAQ 226 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATS 250 +NLT AL+ G +GL + P+ + +++G+EGKGL +E Sbjct: 227 ATNLTRALEGYKKEGVFVVGLDAGGDTPIPDLELATGPLVIVIGSEGKGLSRLVREACDV 286 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +A + + G ++LN S AA V+LY + Sbjct: 287 VASIPI-GNAESLNASVAAGVSLYEVARRRS 316 >gi|318040410|ref|ZP_07972366.1| RNA methyltransferase, TrmH family protein [Synechococcus sp. CB0101] Length = 261 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 58/282 (20%), Positives = 97/282 (34%), Gaps = 27/282 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M LI+ R + ++++ +Q + + L L G H + Sbjct: 1 MELITS------------------RRNPLVGRLRALHQ-PKGRREQGLLLLEGTHQLQEL 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + QLLAT + R P++ V + ++ + + +A Sbjct: 42 LRLGLQP-EQLLATPAWIERHGALLA-DQDLPLQPVGEEVMEAVATTDHPDGVVATLARQ 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + ++ LD + DP N+G +LR+A+A D + P + VL SA Sbjct: 100 ALPVA---RGDGAFVLALDQLQDPGNLGTLLRTALAAGVDEVWLGGGADPLQPKVLRASA 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSW---GFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 AL + L +P Q L+LG EG Sbjct: 157 GAALALPLLRLSDRSELLPLLERAVAAGRQLAATLVQPGVQPYWQLDWTRPTVLLLGNEG 216 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 GL P+ AT + +++LNV+ AAA L Sbjct: 217 AGLHPQLAALATHRITIPHSAAVESLNVAVAAAPLLLERWRQ 258 >gi|330995662|ref|ZP_08319560.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT 11841] gi|329574721|gb|EGG56282.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT 11841] Length = 263 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 8/255 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S QK + + + G V L L R + Sbjct: 6 KIKLIRSLEQK-KFRKEQQLFVAEGHKLVDDLLPAFDCTFLAALKEWLDTRREVVETLAR 64 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 ++ V + + K ++ LA+ + + QL + LD V DP N+G Sbjct: 65 KGCEIQEVSAEELQKTSLQKNPQDVLAVFHQRQAEGAPEHILKDQLCLGLDGVQDPGNLG 124 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I + + + ++ GA+ + +S + Sbjct: 125 TIIRIADWFGIEHIFCSPDTADLYNPKTVQATMGAMARVCVHYLS---LTDLLRAAETDT 181 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALN 264 + + + + +++G EG G+ ++ ++LN Sbjct: 182 PVYGTFLDGNDMYGTELSSNGLIVMGNEGNGISRDIASLINRKLYIPNYPLERNTSESLN 241 Query: 265 VSNAAAVALYITQNH 279 V+ A A+ + Sbjct: 242 VAVATAIVCAEFRRR 256 >gi|148273670|ref|YP_001223231.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831600|emb|CAN02568.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 356 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 11/248 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTV 96 R Q E+ + G ++V AL P+ ++ + + PV V Sbjct: 100 RRAKQQDESEVVTGRNSVVEALRAKIPATALYIASRIEYDDRVKEVLSLATGRGIPVLEV 159 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGA 149 +D+I G +AVHQGLAL+ P LL+ LD + DP N+GA Sbjct: 160 MRPELDRIAGHDAVHQGLALKVPPYEYADAIELLDKTISRGQLPLLVALDGITDPRNLGA 219 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+RS AF G+I +R S +A K+++GA P SNLT L+ + G Sbjct: 220 IIRSVAAFGGHGVIVPQRRSVGLTASAWKTSAGAAARTPVAMASNLTQTLKALKQRGVFV 279 Query: 210 IGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL L + + I +++G+EGKGL ET ++ + + ++LN A Sbjct: 280 VGLDGGGDMSLHEFTLADRPIVVVVGSEGKGLSRLVTETCDTVVSIPIGASTESLNAGIA 339 Query: 269 AAVALYIT 276 A+V LY Sbjct: 340 ASVTLYEI 347 >gi|262368611|ref|ZP_06061940.1| tRNA/rRNA methyltransferase [Acinetobacter johnsonii SH046] gi|262316289|gb|EEY97327.1| tRNA/rRNA methyltransferase [Acinetobacter johnsonii SH046] Length = 258 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 97/257 (37%), Gaps = 7/257 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K ++ ++S + + + L G H A + +K+ + T+NAL D Sbjct: 8 SKDNPKIKHLRGLIEQSSYRKKQDQTVLEGTHLGLAWVE-KRKKLNSIFTTENALEHPDI 66 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 L V +++ + + S L++ +++ D Sbjct: 67 CDILDEYEGAVFVIAESLYRDLSTLGTTLPFLAVVDLPSSSQSVDFSLDTLIL--ENIQD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LRSA A +I TK + S + ++ GA + + D L++ Sbjct: 125 PGNVGTLLRSAAAAGIKQVICTKGSAALWSPRVLRAGMGAHFSLNTYENVAIEDVLERFE 184 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + T ++S + ILG EG+G+ A + PG ++L Sbjct: 185 IPVYVTSSHQAESLYQKD---LTQACVWILGNEGQGVSDFALAHA-QALSIPQPGGQESL 240 Query: 264 NVSNAAAVALYITQNHF 280 NV+ A ++ + Sbjct: 241 NVAIAGSICFFEMVRQR 257 >gi|269796449|ref|YP_003315904.1| rRNA methylase , group 3 [Sanguibacter keddieii DSM 10542] gi|269098634|gb|ACZ23070.1| rRNA methylase, putative, group 3 [Sanguibacter keddieii DSM 10542] Length = 339 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 119/272 (43%), Gaps = 17/272 (6%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPEN---LFLYGVHTVSAALNNPSRKIFQLLA----TKNA 77 R++ + + + + + + G + V AL + + + Sbjct: 67 RSNGRPSGGSRPSGRGKGPKKSGSATHEMVSGRNAVLEALRA-RIPVTTVYIGTRLEADD 125 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------R 130 R + + V +D++ ++VHQG+A++ P + + Sbjct: 126 RTREILQIASGRGYNLLEVTKPELDRLTD-DSVHQGVAIQVPPYEYRDPEDLLDIAAELE 184 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 L++ LD V DP N+GA+LRSA AF G++ +R S +A K ++GA +P Sbjct: 185 QPALIVALDGVTDPRNLGAVLRSAGAFGAHGVLVPERRSAGVTASAWKVSAGAAARVPVA 244 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETAT 249 R +NLT L + S G +GL + + + D I L++G+EGKGL +ET Sbjct: 245 RATNLTRTLLEYKSAGCFIVGLDGGGEVSVGDLAFSVDPIVLVVGSEGKGLSRLVRETCD 304 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++A + + +++LN AA +ALY A Sbjct: 305 AIASIPIASAVESLNAGVAAGIALYEVAKVRA 336 >gi|148985553|ref|ZP_01818742.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP3-BS71] gi|147922273|gb|EDK73394.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP3-BS71] Length = 236 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 95/247 (38%), Gaps = 13/247 (5%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 K + +QK ++ + G H A+ I ++ A +N +L Sbjct: 2 VKNAKKLHQK-KYRKSA--YLIEGWHLFEEAVQAGVT-IEKIFALENYRNQLAA------ 51 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 FP + I + QG+ D + L + + V DP N+G Sbjct: 52 -FPQTVWISEDILLDLADSQTPQGIVAVVQKEEVGQADLSQGKFLFL--EDVQDPGNVGT 108 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A G+I + + + S +S G+ H+P R+++ + Sbjct: 109 IIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVL 168 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 S + + L++G EG+G+ P E+A + H+ M G ++LNV+ A Sbjct: 169 ATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAT 228 Query: 270 AVALYIT 276 + ++ Sbjct: 229 GILIFHL 235 >gi|302336402|ref|YP_003801609.1| RNA methyltransferase, TrmH family, group 3 [Olsenella uli DSM 7084] gi|301320242|gb|ADK68729.1| RNA methyltransferase, TrmH family, group 3 [Olsenella uli DSM 7084] Length = 299 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 106/241 (43%), Gaps = 14/241 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA------LARLDWDANLPHPFPVKTVPPQTIDK 103 + G + AL + + L + LARL + PV+ V +D Sbjct: 49 LIEGRRACAEALE-GGVPLRRALVADASGGADQTLARLVERLSEAQ-VPVERVSRARLDS 106 Query: 104 IVGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQG+ +E++P TL A L+++LDHV D N GAI+RSA Sbjct: 107 LSSHGA-HQGIIVESSPFEYATLGDVISSAGSGDALVVLLDHVTDEGNFGAIVRSAEVVG 165 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GI+ S S K+++GA+ H+P R+ NL AL ++ GF + +++ Sbjct: 166 ASGIVIANARSASVGVGAYKTSAGAVMHLPIARVPNLATALDRLKEAGFWVAAATEHAEQ 225 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ L++G+EG G+ +E L G I++LNV+ AA V Y Sbjct: 226 DAWSAPLGGRLCLVMGSEGGGISRLVRERCDFGCRLPQRGRIESLNVAQAATVLCYEWLR 285 Query: 279 H 279 Sbjct: 286 R 286 >gi|269121680|ref|YP_003309857.1| RNA methyltransferase, TrmH family, group 3 [Sebaldella termitidis ATCC 33386] gi|268615558|gb|ACZ09926.1| RNA methyltransferase, TrmH family, group 3 [Sebaldella termitidis ATCC 33386] Length = 234 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 3/231 (1%) Query: 51 LYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G++ V AL+ KI T R + + + G Sbjct: 4 IIGLNAVREALDGSKNIEKIEIYKGTNKDRIRDILSKASKKNIKIFYTDKRQ-ENSQGIA 62 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 A+ + +++VLD + DP N GAI+RSA F DGII R Sbjct: 63 ALVSEYDYYLELNEFLEKVLAKQRSIVLVLDQIQDPRNFGAIIRSAECFGVDGIIIQDRN 122 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S S + + KS++GA+EH+ I+++N++D++ K+ +G+ G +D + E +K Sbjct: 123 SVSVTETVVKSSTGAIEHVDIIKVTNVSDSMDKLKKYGYFIYGAEADGETEYYNEPFPEK 182 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+LG+EGKG+R K +E + ++ M G I +LNVS A + L + Sbjct: 183 LCLVLGSEGKGMRKKVKEHCDKILNIPMHGKINSLNVSVANGILLAEISKN 233 >gi|73667231|ref|YP_303247.1| RNA methyl transferase TrmH, group 3 [Ehrlichia canis str. Jake] gi|72394372|gb|AAZ68649.1| RNA methyl transferase TrmH, group 3 [Ehrlichia canis str. Jake] Length = 252 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 128/239 (53%), Gaps = 9/239 (3%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW-----DANLPHPFPVKTVPPQ 99 +++YG H AAL N +R+ +++L T+N + +KTV Sbjct: 2 NKNKIWIYGKHACIAALQNKNRECYEMLVTENITKNNSEITKISELCKQRNINLKTVNLN 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 I+ ++ + HQG+AL+ + + T++ + + +++LD + D HN+GAI+RSAV Sbjct: 62 YINSVLPHNSNHQGIALKASTINPLTIEEILNSSTINSTIILLDQITDIHNVGAIMRSAV 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F+ D II SPSE+ ++K++SGA++ IP + NL ++ + G+ G + Sbjct: 122 CFNVDAIILPYHNSPSENCGMSKTSSGAIDMIPIAYVINLVSTIKLFKNAGYWCYGFDTK 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L + ++K +I G+E KG+R T+E + + I +LNVSNAAAVALY Sbjct: 182 EGELLHKTKFDNKKLIIFGSEDKGMRKLTKENCDFLLKIATSNKIDSLNVSNAAAVALY 240 >gi|251781823|ref|YP_002996125.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390452|dbj|BAH80911.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 245 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 90/231 (38%), Gaps = 10/231 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + + + G H A + + + + R+ V V + + Sbjct: 22 HRQHSYLIEGWHLFEEAQQSG-QGFRHIFVLEELAERVADQE------KVVLVSADVLKE 74 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + + +A P L+ D ++L+ V DP N+G I+R+A A DG+ Sbjct: 75 LTDSPSPQGIIAEVDMPQLAFPTDYQGKY---LILEDVQDPGNLGTIIRTADAAGFDGVF 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +++ + ++ +S G+ H+P R + S + Sbjct: 132 LSEKSADVYNSKTLRSMQGSHFHLPIWRTDIYKICREMQEHNTPVLATTLSKVSVDYKTV 191 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + AL++G EG+G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 192 PHQESFALVMGNEGQGISAEMTTLADQLVHITMPGQAESLNVAVAAGILIF 242 >gi|134097057|ref|YP_001102718.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|291007002|ref|ZP_06564975.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|133909680|emb|CAL99792.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 321 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 67/255 (26%), Positives = 114/255 (44%), Gaps = 17/255 (6%) Query: 37 NQKSRHTSQP---ENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLP--H 89 Q++RH + + G + V+ + L + +A R+ Sbjct: 62 QQRTRHRQKERSDNAEVIAGRNPVAECIRAG-VPASGLYVAQGIDADDRVTEAVRGAGSR 120 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVN 142 V V +D++ G A+HQGLAL+ + L++ LD V Sbjct: 121 GISVVEVQRAELDRMTG-GAMHQGLALQVPAYEYAHPEDVLTEAHNSGLPPLIVALDGVT 179 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+GA++RSA AF G+I +R S +AV ++++G +P R NLT L+ + Sbjct: 180 DPRNLGAVIRSAAAFGAHGVILPQRRSAGLTAVAWRTSAGTAAKLPVARAVNLTRTLKDL 239 Query: 203 HSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 S G +GL +DS ++ + +++G+EG+GL +ET + M G ++ Sbjct: 240 KSEGLMVVGLDADSDITSDELELATGPLVVVVGSEGRGLSRLVRETCDQTVSIPMAGSVE 299 Query: 262 ALNVSNAAAVALYIT 276 +LN S AA + L Sbjct: 300 SLNASVAAGIVLAEV 314 >gi|330719322|ref|ZP_08313922.1| rRNA methylase [Leuconostoc fallax KCTC 3537] Length = 257 Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 98/255 (38%), Gaps = 5/255 (1%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 L + K K + + L G H V A+ + K ++AT+ +A Sbjct: 2 DRILSNQNPRVKAWAKLATK-KGRQENRTYLLDGWHLVEEAIKVKA-KFHAVMATETQMA 59 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 D PH P + + I G + G+ E + + ++LD Sbjct: 60 EHLPDV--PHGVPAFEISEEVAKHIAGTNSPQ-GIFAEISLPEKTFDPKYVHDGAWLLLD 116 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 ++ DP N+G ++R+A A G++ + + S + ++ G+ H+ + Sbjct: 117 NIQDPGNVGTLVRTADAAGFKGVVLGAGTADAYSPKVVRAMQGSQFHLEVLNGDLDEWTD 176 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + + L ++ K + LI+G EG G+ + T+ ++ + G Sbjct: 177 ALISNDLPVYGSLLNEEAKSYHDVQPATQFGLIVGNEGNGMSAALADKTTANLYIPIQGR 236 Query: 260 IKALNVSNAAAVALY 274 ++LNV+ A + ++ Sbjct: 237 AESLNVAIAGGILMF 251 >gi|325104097|ref|YP_004273751.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145] gi|324972945|gb|ADY51929.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145] Length = 248 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 95/255 (37%), Gaps = 13/255 (5%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 ++S QK + + + G+ +++ L + + + + + L L Sbjct: 6 QISFIKSLQQK-KFRKEHNLFIVEGLKSITEFLASKYQ-VQTIYCLSKDIPNLP---KLS 60 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V + Q + KI + + LA +E L L+ + L++ D V DP N+ Sbjct: 61 QKQKVFEITEQELTKISSLQNPQEALALIEIPQLDVNVLEIEKEINLVL--DGVQDPGNL 118 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A F II +K + + ++ G+L + + + + Sbjct: 119 GTIIRTADWFGFSNIICSKNTVDVYNPKVVQATMGSLARVNVSYVDLPAYLIAQQLPKFG 178 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + + LILG+EG G+ + + G ++LNV Sbjct: 179 TLLDGKNIYHQDWPEAGF-----LILGSEGNGISDEIISLLDGSVTIPKLGQTESLNVGI 233 Query: 268 AAAVALYITQNHFAK 282 AAA+ + K Sbjct: 234 AAAICCSEIKRKSLK 248 >gi|215429080|ref|ZP_03426999.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92] gi|289752294|ref|ZP_06511672.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92] gi|289692881|gb|EFD60310.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92] Length = 298 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 68/260 (26%), Positives = 116/260 (44%), Gaps = 11/260 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79 A LR +H K+ ++ ++ + L G + V L + A Sbjct: 41 AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTEADE 99 Query: 80 RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131 RL + + +D++ +HQG+AL+ P D + Sbjct: 100 RLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQP 158 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL+ LD+++DP N+GAI+RS AF G++ +R S S +AV ++++GA IP R Sbjct: 159 PALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 218 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +NLT L+ G + IGL + L+ D + +++G+EGKGL ++ + Sbjct: 219 ATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEV 278 Query: 252 AHLHMPGIIKALNVSNAAAV 271 + M ++LN S AA V Sbjct: 279 VFIPMAAQAESLNASVAAGV 298 >gi|117927294|ref|YP_871845.1| RNA methyltransferase [Acidothermus cellulolyticus 11B] gi|117647757|gb|ABK51859.1| RNA methyltransferase, TrmH family, group 3 [Acidothermus cellulolyticus 11B] Length = 250 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 117/249 (46%), Gaps = 14/249 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTI 101 + E+ + G + AL + LL + + + ++ V + + Sbjct: 3 RSEDTLIGGRNPAVEALRSGVPVRRVLLADGIDSDRRVQEIRERCEHDGIEIRVVARREL 62 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155 D++ G HQG+ + P R LL+ +D V DP N+GAI+RSA Sbjct: 63 DRLTGTG--HQGVVVVVPPFTYADEREIVDRAFERAPHLLLAVDGVTDPRNLGAIVRSAA 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF G++ KR + + + K+++GAL +P R++N+ L + +GLS+D Sbjct: 121 AFGASGVLLPKRRAAGVTPAVWKASAGALARMPLARVTNMARVLVALAERNVTVVGLSAD 180 Query: 216 SKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 ++Q + +AL++GAEG+GL +E T +A + M G +++LNVS A +A Sbjct: 181 GDTTIQQAADDAGGGPVALVVGAEGRGLSRLVREKCTVVASIPMTGTVESLNVSVATGIA 240 Query: 273 LYITQNHFA 281 L++ + Sbjct: 241 LFVLSQRLS 249 >gi|169348435|ref|ZP_02866373.1| hypothetical protein CLOSPI_00150 [Clostridium spiroforme DSM 1552] gi|169293904|gb|EDS76037.1| hypothetical protein CLOSPI_00150 [Clostridium spiroforme DSM 1552] Length = 238 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 53/252 (21%), Positives = 114/252 (45%), Gaps = 19/252 (7%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K + QK ++ + + G H V A+ +++ L++TK+ Sbjct: 6 SNNTIKTLIKLKQK-KYRDETGYYLVEGEHLVEEAMKA--KQVECLISTKD--------- 53 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + P+ V + + K+ ++ +A + +D R ++LD + DP Sbjct: 54 -ITSDLPIVIVSNEVMSKLSFTKSPQFIMAKCKIKKENKLIDGKRY----LILDDLQDPG 108 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIG ++R+A+AFS D +I + + L +S GA HI I + + Sbjct: 109 NIGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHINCIYDDLK-TVISTLKKN 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + IG + ++ + ++Q ++K+A I+G EG G+ + + ++ + I++LNV Sbjct: 168 NVKIIGSALENGQDIKQIKISEKMAFIVGNEGNGMNKDILQECDYVGYIPIN-TIESLNV 226 Query: 266 SNAAAVALYITQ 277 + A ++ +Y + Sbjct: 227 AIAGSIMMYHFK 238 >gi|225377115|ref|ZP_03754336.1| hypothetical protein ROSEINA2194_02760 [Roseburia inulinivorans DSM 16841] gi|225211020|gb|EEG93374.1| hypothetical protein ROSEINA2194_02760 [Roseburia inulinivorans DSM 16841] Length = 286 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 94/243 (38%), Gaps = 8/243 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + P + AL I L+ K+ R PV T + Sbjct: 42 YEPAPGIFIAESPKVIERALETGCEPISLLMEQKDFDTRGKNIIAKCKSIPVYTAKLGVL 101 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++I G + L P + +N++ + VL++V +P N+GAI RSA A + D Sbjct: 102 EQITGYKLARGMLCAMHRPAMPSAEKVCKNARRIAVLENVVNPTNVGAIFRSAAALNMDA 161 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL--------S 213 ++ T S + + G + +P+ I N + + G + Sbjct: 162 VLLTSACSDPLYRRAIRVSMGTVFQVPWTYIENKNVSWPQGGMDLLHEYGFKTVAMALRN 221 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + E+ +K+A+ILG EG GL +T + M + +LNV+ A+AVA Sbjct: 222 DSVRIDDEKLHAEEKLAIILGTEGDGLAAETMADCDYTVKIPMSHGVDSLNVAAASAVAF 281 Query: 274 YIT 276 + Sbjct: 282 WEF 284 >gi|78189691|ref|YP_380029.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii CaD3] gi|78171890|gb|ABB28986.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii CaD3] Length = 265 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 102/247 (41%), Gaps = 5/247 (2%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWDANLPH 89 ++ + + K +H + G+ TV P L + P+ Sbjct: 14 RRYAALHHK-KHRDSDKLFLAEGLRTVRELCQQLPHEDFLVALLLRPHAEAEALTFAQPY 72 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 + ++ + ++ A+ P PT+ + L++ LD V DP N+G Sbjct: 73 AHKLFSITAKECAQLADTTTPSGIFAIFRQPTFQPTIVNPQRRSLVVALDDVQDPGNVGT 132 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A F D ++ ++ + + + +S +G+L +P+ R + + L + G+ Sbjct: 133 IMRTAAWFGVDALLCSQGTADLYNPKVVRSCAGSLFALPHYRCNLMVHELSRWQQQGYSI 192 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVS 266 + S + + E DK +++G E G+ Q +A + + G +++LN S Sbjct: 193 VCSSLEGRDICGGEAFGDKTVIVIGNEANGVSQAVQASADMLVRIPHAGSKPAVESLNAS 252 Query: 267 NAAAVAL 273 AAA+ + Sbjct: 253 IAAAILI 259 >gi|134094575|ref|YP_001099650.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans] gi|133738478|emb|CAL61523.1| tRNA/rRNA methyltransferase SpoU-like [Herminiimonas arsenicoxydans] Length = 265 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 51/261 (19%), Positives = 95/261 (36%), Gaps = 9/261 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALAR 80 R++ YK+++ S+ + L G+H A L + + N+ Sbjct: 8 SRDNPLYKELKHLATSSQARRKAGRTLLDGIHLCEAYLQQVGLPPLCIASETALLNSEVT 67 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 + + +P + V G+ + + R Q ++LD Sbjct: 68 VIVQQCIHSHTQCIVLPDALFHALSQ---VEHGVDILFVIDTPELTEPQRLLQSAVLLDR 124 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N G+I+RSA A + + + + S + ++ GA + I D Sbjct: 125 VQDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVMRAGMGAHF---LMEIFENVDLEA 181 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + I SS ++K L +A + G EG+G+ AT + G I Sbjct: 182 LIARADIPVIATSSHAEKRLYDLDLTQPVAWLFGHEGQGVTEHLLALATHQITIPHLGAI 241 Query: 261 KALNVSNAAAVALYITQNHFA 281 ++LNV+ ++AV + Sbjct: 242 ESLNVAASSAVCFFEQVRQIT 262 >gi|62896307|emb|CAH94293.1| putative rRNA methylase [Streptomyces griseus subsp. griseus] Length = 308 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 86/247 (34%), Gaps = 11/247 (4%) Query: 45 QPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPP 98 + G V A + + +L AT A R H V Sbjct: 55 KERRFIAEGPQAVREAAAHRGGDGEPTLIELFATPEAADRYADIVEAAHTAGARVHLADA 114 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + + + + L+ VL +V DP N G +LR A A Sbjct: 115 DVLADVSQTVTPQGLIGVCRFLDTPFPEILAARPTLVAVLANVRDPGNAGTVLRCADAAG 174 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D +I T + +++ G+L H+P + A+Q + G + + Sbjct: 175 ADAVILTDASVDLYNPKSVRASVGSLYHLPVAVGVPVEQAVQGLRDAGVRILAADGAGAA 234 Query: 219 PLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L+ E A + G E GL +T+ A ++ + + G ++LN++ AAAV LY Sbjct: 235 DLDDELDAGTMGTPTAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 294 Query: 275 ITQN-HF 280 + Sbjct: 295 ASARAQR 301 >gi|325108798|ref|YP_004269866.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces brasiliensis DSM 5305] gi|324969066|gb|ADY59844.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces brasiliensis DSM 5305] Length = 259 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 70/265 (26%), Positives = 120/265 (45%), Gaps = 22/265 (8%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 HR KK+ S +QKS +L+G V L I +LL + A ++ D Sbjct: 2 PKHRSGKKLLSNHQKS---------WLWGTIAVWETLQTGRWPIRELLLSDQASQQVHED 52 Query: 85 ---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMV 137 P + + ++++ K HQG+ P LD + ++ LL++ Sbjct: 53 CRQLAEERDIPCRIESARRLEQLS-KAKDHQGILARLGPFPYAALDEILGQLTSASLLLM 111 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD V DP N GAI+R+A A +G+I R + S+ + +S++GA+ HIP + NL D Sbjct: 112 LDRVQDPFNFGAIVRTAAALGVEGVIIGTREQAAISSHVVRSSAGAVNHIPICEVDNLQD 171 Query: 198 ALQKMHSWGFQ-----TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 L+ Q G + E + + LI+G E +G+ P E ++ Sbjct: 172 TLEVCRLARCQSLAATMNGTHAVQDIRALPEFAHSPLLLIIGNEARGVAPALLERCSTTV 231 Query: 253 HLHMPGIIKALNVSNAAAVALYITQ 277 H+ M G +++LN + AA + ++ + Sbjct: 232 HIPMQGAVESLNAAVAAGILMFALR 256 >gi|300774979|ref|ZP_07084842.1| 23S rRNA methyltransferase [Chryseobacterium gleum ATCC 35910] gi|300506794|gb|EFK37929.1| 23S rRNA methyltransferase [Chryseobacterium gleum ATCC 35910] Length = 255 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 94/277 (33%), Gaps = 26/277 (9%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 LI +++KI K + +R + + + G AL Sbjct: 2 LIESFQNDKI------------------KNVTKLLTDNRFRKKSKVFVVEGQQENERALQ 43 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 + + + V + +KI + + + + + Sbjct: 44 YDFEPLEFFIC-------ESIFKGAVPDGKIHYVSEKVYEKIAYRGSSEGIIGVYHTKEI 96 Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + + +++++ V P N+GAILRS AF D +I + + + +S+ G Sbjct: 97 PLSSFTPQKDSTVIIVEGVEKPGNLGAILRSCEAFGIDALIVADGKTDFYNPNVIRSSVG 156 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 L + + N + L +S + L + + A++ G E GL Sbjct: 157 CLFGMEVYQAENKETLEFLQKNSFNIYTTLMDESAEDLYKRDFRQRSAVLFGTEHSGLSD 216 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M G I +LN+SNA A+ Y + Sbjct: 217 FWIGKGKNTL-IPMAGSIDSLNLSNAVAITCYESLRQ 252 >gi|85716737|ref|ZP_01047705.1| RNA methyltransferase TrmH, group 3 [Nitrobacter sp. Nb-311A] gi|85696455|gb|EAQ34345.1| RNA methyltransferase TrmH, group 3 [Nitrobacter sp. Nb-311A] Length = 234 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 112/224 (50%), Positives = 149/224 (66%), Gaps = 1/224 (0%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 LYG HTV+AAL NP R I +LL T+NA RL + N+ + V P TID+ +G +AV Sbjct: 2 LYGWHTVTAALANPRRHIRKLLLTENAALRLKHE-NINTRITPEIVRPSTIDQRLGPDAV 60 Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQGL E PL SP + + +++VLD + DPHN+GAI+RSA AFS I+TT R+SP Sbjct: 61 HQGLLAEADPLPSPDIGTLTQEGIVLVLDQITDPHNVGAIMRSAAAFSVKAIVTTARHSP 120 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + VLAKSASGALE +P +++ NL AL ++ G+ T+GL S + L +A Sbjct: 121 EATGVLAKSASGALEVVPLVQVQNLARALTGLNDRGYMTVGLDSTGGENLAAVQLRQPLA 180 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L+LGAEGKGLR T++T + +A L MPG IK+LNVSNAA +ALY Sbjct: 181 LVLGAEGKGLRQLTRDTCSLVARLDMPGHIKSLNVSNAAVLALY 224 >gi|301059011|ref|ZP_07199977.1| RNA methyltransferase, TrmH family, group 3 [delta proteobacterium NaphS2] gi|300446892|gb|EFK10691.1| RNA methyltransferase, TrmH family, group 3 [delta proteobacterium NaphS2] Length = 278 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 95/240 (39%), Gaps = 11/240 (4%) Query: 53 GVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 G V L + ++ + A + PV + I+ A Sbjct: 33 GFQAVRDTLQSKDGTFREIWIAEGKSSARTQEIIKLATSKNIPVHFKQRHYLSDILKDMA 92 Query: 110 VHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ S LL+V DH+ D N+GA++R+A F G+ Sbjct: 93 -HQGIVGIADAFDYSNFHLLLKSALEAGPSALLLVADHITDSGNLGALMRTAAFFGAHGL 151 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + K +SGA +P R++NL+ AL ++ +G + ++++ + Sbjct: 152 IIPKDRSAGITPTVLKRSSGAHTKLPVARVTNLSRALNELSRNELWIMGAAGEAEESIYD 211 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + L+LG E KGL P ++ + + PG +LN+S A V L K Sbjct: 212 FDWRRPLVLVLGNERKGLSPSARKQCHGLVSIPSPGNTDSLNISVAGGVILSEICRQRQK 271 >gi|291450422|ref|ZP_06589812.1| rRNA methyltransferase [Streptomyces albus J1074] gi|291353371|gb|EFE80273.1| rRNA methyltransferase [Streptomyces albus J1074] Length = 294 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 51/268 (19%), Positives = 93/268 (34%), Gaps = 11/268 (4%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRK-IFQLLATKNALA 79 + + +++ + G V AL + + +L T A Sbjct: 26 ISPRSTRVTAAKRLARRN-VRGKERRFLAEGPQAVREALGHRSGDEPTLVELFTTVEAAE 84 Query: 80 RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137 R V TI +I + + +L+ V Sbjct: 85 RYAEIIGAARDEGARVHLADEATIAEIATTVTPQGLVGVCRFLDTPFDRITAARPRLVAV 144 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L +V DP N G +LR A A D ++ T + +++ G+L H+P + Sbjct: 145 LSNVRDPGNAGTVLRCADAAGADAVVLTDASVDVYNPKAVRASVGSLFHLPVAVGVPVET 204 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAH 253 A+ + G + + + L+ E A I G E GL +T+ A ++ Sbjct: 205 AVTGLREAGVRILAADGAGEDDLDTELDRGTMGGPTAWIFGNEAWGLPEETRALADAVVR 264 Query: 254 LHMPGIIKALNVSNAAAVALYITQN-HF 280 + + G ++LN++ AAAV LY + Sbjct: 265 VPIHGRAESLNLATAAAVCLYGSARAQR 292 >gi|166154614|ref|YP_001654732.1| 23S rRNA methyltransferase [Chlamydia trachomatis 434/Bu] gi|166155489|ref|YP_001653744.1| 23S rRNA methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335881|ref|ZP_07224125.1| 23S rRNA methyltransferase [Chlamydia trachomatis L2tet1] gi|165930602|emb|CAP04099.1| 23S rRNA methyltransferase [Chlamydia trachomatis 434/Bu] gi|165931477|emb|CAP07053.1| 23S rRNA methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 269 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 84/263 (31%), Gaps = 10/263 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +N+ K + R ++ L G + AL + R A + Sbjct: 6 KNNARVKSALAL---KRQRARNGTYFLLEGFREIHRALISGYRCSHVFCGELIADKEIAL 62 Query: 84 DANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMVL 138 D L ++K+ KE +A+ L + +++ Sbjct: 63 DRELTSLGIEKLYCSKDILEKLSFKENPENFIAVFEKKELSCQEFLGLQRKNQAPFYLIV 122 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 + P NIGA+LR A DG+I + + +S+ G + +P + S Sbjct: 123 EQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGTVFTMPVWQASLKEVL 182 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 S +Q+ ++ G+E GL P + L M G Sbjct: 183 DLVHQQEWQVFTTTPSAQTFYFDQD-FCQPTVVVFGSEKDGLSPDWLNGSFCNIALPMLG 241 Query: 259 IIKALNVSNAAAVALYITQNHFA 281 +LN+S++ A Y + Sbjct: 242 KADSLNLSSSVAAVAYEVVRQRS 264 >gi|326382700|ref|ZP_08204391.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] gi|326198819|gb|EGD56002.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] Length = 251 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 44/242 (18%), Positives = 89/242 (36%), Gaps = 2/242 (0%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 ++ G ++V AAL+ + + L PV V Sbjct: 6 RASVRRSEGRFLAEGFNSVDAALSTGRAEQVLVRDDDADRHADLIGRALDAGIPVHRVTA 65 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + DK+ A+ + + +LL++ +P N+G + R A A Sbjct: 66 RAADKLSETSTAPGVFAVCQLLTVGLAAVLGDDPRLLVIAVEPREPGNLGTLTRCADAMG 125 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--IGLSSDS 216 D +I + ++++G++ HIP +R ++ L + G T + + Sbjct: 126 ADAVILLGDSVDPHNGKSVRASAGSVFHIPVVRTVDVAGGLAAVADAGIVTLATTMDGEL 185 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ A + G E GL + + A + + G ++LN++ A+AV LY + Sbjct: 186 SLDDADDVLARPHAWLFGNEAHGLPQQVLDGADRSVRIPLRGRAESLNLAAASAVCLYAS 245 Query: 277 QN 278 Sbjct: 246 AR 247 >gi|239978526|ref|ZP_04701050.1| rRNA methylase [Streptomyces albus J1074] Length = 275 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 51/268 (19%), Positives = 93/268 (34%), Gaps = 11/268 (4%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRK-IFQLLATKNALA 79 + + +++ + G V AL + + +L T A Sbjct: 7 ISPRSTRVTAAKRLARRN-VRGKERRFLAEGPQAVREALGHRSGDEPTLVELFTTVEAAE 65 Query: 80 RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137 R V TI +I + + +L+ V Sbjct: 66 RYAEIIGAARDEGARVHLADEATIAEIATTVTPQGLVGVCRFLDTPFDRITAARPRLVAV 125 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L +V DP N G +LR A A D ++ T + +++ G+L H+P + Sbjct: 126 LSNVRDPGNAGTVLRCADAAGADAVVLTDASVDVYNPKAVRASVGSLFHLPVAVGVPVET 185 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAH 253 A+ + G + + + L+ E A I G E GL +T+ A ++ Sbjct: 186 AVTGLREAGVRILAADGAGEDDLDTELDRGTMGGPTAWIFGNEAWGLPEETRALADAVVR 245 Query: 254 LHMPGIIKALNVSNAAAVALYITQN-HF 280 + + G ++LN++ AAAV LY + Sbjct: 246 VPIHGRAESLNLATAAAVCLYGSARAQR 273 >gi|167766952|ref|ZP_02439005.1| hypothetical protein CLOSS21_01469 [Clostridium sp. SS2/1] gi|167710927|gb|EDS21506.1| hypothetical protein CLOSS21_01469 [Clostridium sp. SS2/1] Length = 273 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 89/244 (36%), Gaps = 6/244 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + A I L+ ++ + PV T + Sbjct: 29 YEPDLGIFIAESPKVIQTAFEQGYEPISFLVEDRHIKTQAKDIILQYQDIPVYTASFDVL 88 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++ G L L +++ +++L++V +P N+GAI RSA A + D Sbjct: 89 KQLTGFGLTRGMLCAMRRKPLPALETICDHAKRIVILENVMNPTNVGAIFRSAAALNMDA 148 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH------SWGFQTIGLSSD 215 I+ +K S + + G + IP+ + + T MH Sbjct: 149 ILLSKGCSDPLYRRSVRVSMGTVFQIPWTFLGDDTWPADGMHRLKELGYKNVAMALTDRS 208 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 E + DK+A+ILG EG GL +T + + M + +LNV+ A+AVA + Sbjct: 209 VSIDDEALMSEDKLAIILGTEGDGLCQETIDACDYTVKIPMAHGVDSLNVAAASAVAFWQ 268 Query: 276 TQNH 279 Sbjct: 269 LAKR 272 >gi|291443483|ref|ZP_06582873.1| LOW QUALITY PROTEIN: rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] gi|291346430|gb|EFE73334.1| LOW QUALITY PROTEIN: rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] Length = 296 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 80/247 (32%), Gaps = 11/247 (4%) Query: 45 QPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPP 98 + G V A + + +L AT A R H V Sbjct: 43 KERRFIAEGPQAVREAAAHRGGDGEPTLIELFATPEAADRYADIVEAAHTAGARVHLADA 102 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + + + + L+ VL +V DP N G +LR A A Sbjct: 103 DVLADVSQTVTPQGLIGVCRFLDSPFQEILDARPTLVAVLANVRDPGNAGTVLRCADAAG 162 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPY----IRISNLTDALQKMHSWGFQTIGLSS 214 D +I T + +++ G+L H+P + + Sbjct: 163 ADAVILTDASVDLYNPKSVRASVGSLFHLPVAVGVPVDQAVQGLRDAGVRILAADGAGAD 222 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D L+ A I G E GL +T+ A ++ + + G ++LN++ AAAV LY Sbjct: 223 DLDDELDAGTMGTPTAWIFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 282 Query: 275 ITQN-HF 280 + Sbjct: 283 ASARAQR 289 >gi|149021923|ref|ZP_01835910.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP23-BS72] gi|147929961|gb|EDK80949.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP23-BS72] Length = 236 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 94/247 (38%), Gaps = 13/247 (5%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 K + QK ++ + G H A+ I ++ A +N +L + Sbjct: 2 VKNAKKLRQK-KYRKSA--YLIEGWHLFEEAVQAGVT-IEKIFALENYRDQLATFSQT-- 55 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 V + + + QG+ D + L + + V DP N+G Sbjct: 56 ----VWVSEDILLDLADSQ-TPQGIVAVVQKEEVGQADLSQGKFLFL--EDVQDPGNVGT 108 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A G+I + + + S +S G+ H+P R+++ + Sbjct: 109 IIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVL 168 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 S + + L++G EG+G+ P E+A + H+ M G ++LNV+ A Sbjct: 169 ATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAT 228 Query: 270 AVALYIT 276 + ++ Sbjct: 229 GILIFHL 235 >gi|329116746|ref|ZP_08245463.1| RNA methyltransferase, TrmH family [Streptococcus parauberis NCFD 2020] gi|326907151|gb|EGE54065.1| RNA methyltransferase, TrmH family [Streptococcus parauberis NCFD 2020] Length = 247 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 92/231 (39%), Gaps = 10/231 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + + + G H A + + ++ +L V V + + + Sbjct: 24 HRKGSYLIEGWHLFDEAQKAHQEFVH-IFLQEDMADKLRSLE------GVILVTNEVLKE 76 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + QG+ E L+ ++ LL+ + V DP N+G ++R+A A G+ Sbjct: 77 LTDSP-NPQGIIAEIKMPSPTVLEDMQGKYLLL--EDVQDPGNLGTLIRTADAAGFTGVF 133 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + + + + +S G+ H+P R + L Q SD + Sbjct: 134 LSDKSADLYNPKTLRSMQGSHFHLPVWRDNVLQFCQQAKEVGVPVIASTLSDQSVDYQSI 193 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L++G EG G+ + E A ++ H+ MPG ++LNV+ AA + ++ Sbjct: 194 ETPESFILVMGNEGAGISSQMTEIADTLVHITMPGQAESLNVAVAAGILIF 244 >gi|154482486|ref|ZP_02024934.1| hypothetical protein EUBVEN_00153 [Eubacterium ventriosum ATCC 27560] gi|149736687|gb|EDM52573.1| hypothetical protein EUBVEN_00153 [Eubacterium ventriosum ATCC 27560] Length = 270 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 101/251 (40%), Gaps = 4/251 (1%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ +RH + V AL+ I L+ ++ + Sbjct: 18 YARLSEGQLLNRHEPEKGIFIAESPIVVERALDAGCEPISILVEDRHIKNQAKNIIERCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P+ T P + I G + L P L + ++ + + VL+++ +P N+GA Sbjct: 78 NIPIFTAPFDVLTGITGFKLTRGMLCAMHRPKLKTVEEICKDKRRVAVLENIMNPTNVGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A + D ++ T S + + G + IP+ I ++ Sbjct: 138 IFRSAAALNIDAVLLTHGCSNPLYRRAIRVSMGTVFQIPWTFIDEKEGTGIELLHNMGFK 197 Query: 210 IGLSSDSKKPLEQEIKN----DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + + + KN +K+A+ILG EG+GL T ++ + M + +LNV Sbjct: 198 TAAMALTDNSVSIDDKNVKSEEKLAIILGTEGEGLHQNTINSSDYTIKIPMSHGVDSLNV 257 Query: 266 SNAAAVALYIT 276 + A+AVA + Sbjct: 258 AAASAVAFWEL 268 >gi|62184854|ref|YP_219639.1| hypothetical protein CAB210 [Chlamydophila abortus S26/3] gi|62147921|emb|CAH63668.1| 4.2.3 [Chlamydophila abortus S26/3] Length = 265 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 76/261 (29%), Gaps = 9/261 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 +N+ K+ + + L G + AL + ++ + Sbjct: 6 KNNPKVKEAVALKHNRS--RKGPVFLLEGFREIQKALASGYE-CERIFCGTRISEKEQAF 62 Query: 85 ANLPHPFPVKTV-----PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 + P++ V + + + ++++ Sbjct: 63 LHTIQKLPLEKVYCTEETLSKLSYKEHHDNFIAVMKKRWWSRKEFLAQKRNPLPFYLIIE 122 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V P N+GAILR A DG+I + + +S+ G + +P + Sbjct: 123 QVEKPGNVGAILRIADGVGADGVILCDPIVDVYNPNVIRSSLGTVFTLPIWSATLDQVQQ 182 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + + E N + L+ G+E GL S L M G Sbjct: 183 VILEEKWHAFVTSPRAHTMYF-CENYNQPLVLVFGSEKDGLTASWLRGNFSKISLPMLGQ 241 Query: 260 IKALNVSNAAAVALYITQNHF 280 +LN+S A + Y Sbjct: 242 ADSLNLSTAVSAVAYEVVRQR 262 >gi|227505050|ref|ZP_03935099.1| TrmH family rRNA methyltransferase [Corynebacterium striatum ATCC 6940] gi|227198414|gb|EEI78462.1| TrmH family rRNA methyltransferase [Corynebacterium striatum ATCC 6940] Length = 267 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 100/257 (38%), Gaps = 6/257 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + ++ + + G + V AA++ + + T+ A R Sbjct: 14 PRIVNAAKLH-RAAARKKANQFIIEGENAVDAAVSTGAATD--VFVTEKAAERFQDIVTA 70 Query: 88 PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V + + + AL L S L+ V ++P Sbjct: 71 CGYMDVYVHPITDKAARHLSDTATTTGLFALCKPVLWSAGKILNGKPNLVSVPVLTSEPG 130 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G ++R++ A DG+I +A++++G+L HIP R N+ D L ++ Sbjct: 131 NAGTLIRTSDAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVARDPNIKDVLGQLRKS 190 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G Q + ++D + L + + A + G E GL + QE A + + G ++LN+ Sbjct: 191 GMQILATAADGEVDLAEADLSQPTAWLFGNEAHGLG-ELQEEADMRVRIPILGRAESLNL 249 Query: 266 SNAAAVALYITQNHFAK 282 + AA++ LY + + Sbjct: 250 ATAASICLYESAKALNR 266 >gi|182439701|ref|YP_001827420.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780365|ref|ZP_08239630.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus XylebKG-1] gi|178468217|dbj|BAG22737.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660698|gb|EGE45544.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus XylebKG-1] Length = 281 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 86/247 (34%), Gaps = 11/247 (4%) Query: 45 QPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPP 98 + G V A + + +L AT A R H V Sbjct: 28 KERRFIAEGPQAVREAAAHRGGDGEPTLIELFATPEAADRYADIVEAAHTAGARVHLADA 87 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + + + + L+ VL +V DP N G +LR A A Sbjct: 88 DVLADVSQTVTPQGLIGVCRFLDTPFPEILAARPTLVAVLANVRDPGNAGTVLRCADAAG 147 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D +I T + +++ G+L H+P + A+Q + G + + Sbjct: 148 ADAVILTDASVDLYNPKSVRASVGSLYHLPVAVGVPVEQAVQGLRDAGVRILAADGAGAA 207 Query: 219 PLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L+ E A + G E GL +T+ A ++ + + G ++LN++ AAAV LY Sbjct: 208 DLDDELDAGTMGTPTAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 267 Query: 275 ITQN-HF 280 + Sbjct: 268 ASARAQR 274 >gi|259502664|ref|ZP_05745566.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] gi|259169309|gb|EEW53804.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] Length = 248 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 107/246 (43%), Gaps = 11/246 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 F+ G H AL K+F K + TVP + Sbjct: 2 KTENTDFIIGRHPAVMALKADQEINKVFVQAGLKADAIAEIIKLAKQKRLVISTVPKTKL 61 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSA 154 D++ + HQG+AL A +D ++LD + DPHN+G+I+R+A Sbjct: 62 DQLTDHQ-NHQGVALAVAAYHYADVDDLFANAARKNEDPFFLILDELEDPHNLGSIIRTA 120 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A GII +R + ++V+AK+++GALEH+P R++NL K + + Sbjct: 121 DAAGVHGIIIPRRRAVGLTSVVAKTSTGALEHVPVARVTNL-VQTVKELKNRGVWLFGTD 179 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + +AL++G EGKG+ ++ M + M G +++LN S AA + +Y Sbjct: 180 MKGRDYRTWDAHGAVALVIGNEGKGISSLLKKNCDEMLTIPMVGHVQSLNASVAAGLLIY 239 Query: 275 ITQNHF 280 N Sbjct: 240 QGFNSR 245 >gi|315607159|ref|ZP_07882163.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574] gi|315251213|gb|EFU31198.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574] Length = 273 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 95/248 (38%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + + + + ++ + AL+ + L K+ Sbjct: 17 FSTLTEAQLRHQVDAERGLFIAESPKVIQVALDKGCEPLALLCEHKHIAGDAAAIIARCG 76 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T P + + G L PLL + R ++ ++V+ V D NIGA Sbjct: 77 DLPVYTGPRPVLAALTGYTLTRGVLCAMRRPLLPDVKEVCRGARRVVVIHGVVDTTNIGA 136 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T+ + + + G++ +P+ + + +L ++ Sbjct: 137 IFRSAAALGIDAVLLTRDSCDPLNRRAVRVSMGSVFLVPWTWLDDSIASLSRLGFRTAAM 196 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 ++A+++G EG GL +T E A + + M + +LNV+ A+ Sbjct: 197 ALTDRSVPLDDPALAAEPRLAIVMGTEGDGLPRETIEQADYVVRIPMAHGVDSLNVAAAS 256 Query: 270 AVALYITQ 277 AVA + + Sbjct: 257 AVAFWQLR 264 >gi|295106719|emb|CBL04262.1| rRNA methylase, putative, group 3 [Gordonibacter pamelaeae 7-10-1-b] Length = 248 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 104/244 (42%), Gaps = 15/244 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVG 106 ++ G + AL LLA L D V TVP +T+D Sbjct: 4 YIEGKRPIIEALRTQVPIKRILLADNAKRDGLVEDILRKAKHFDVDVTTVPRKTLDDKS- 62 Query: 107 KEAVHQGLALETAPLLSPTL-----------DAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + HQG+ ET P + + L+++LDH+ D N+GAI RSA Sbjct: 63 ERGSHQGVMAETKPHAYVDITVIERAAEAYAEENGGRALVVILDHLTDAGNLGAIARSAE 122 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G++ + S A KS++GA+ H+P ++ NL + ++ GF G S Sbjct: 123 AVGACGLVIPNKRSAKVDASTYKSSAGAIAHLPVAQVPNLVQVMARLKERGFWVAGASEQ 182 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + + KIAL++G E +GL +E+ + L G + +LNV+ A+ +Y Sbjct: 183 TDDVIWRSNLKGKIALVMGNEAEGLSRVVKESCDFLVKLPQMGEVASLNVAQASTACMYE 242 Query: 276 TQNH 279 Sbjct: 243 WLRQ 246 >gi|262184166|ref|ZP_06043587.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] Length = 285 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 102/257 (39%), Gaps = 6/257 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + ++ + E + G + V AA++ S + T+ A R Sbjct: 33 PRIINAAKLH-RAASRRKAERFLIEGENAVDAAVSTGSATD--VFVTEKAAERFAHIVQT 89 Query: 88 PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V + + + A+ L + +L+ V ++P Sbjct: 90 CGYMDVYVHPITDKAAKHLSDTATSTGLFAVCRPVLWTAGKILAGKPRLVSVPVLTSEPG 149 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G ++R++ A DG+I +A++++G+L HIP R N+ D L K+ S Sbjct: 150 NAGTLIRTSDAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVARDPNIKDVLGKLRSS 209 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G Q + ++D + L + + A + G E GL + + A + + G ++LN+ Sbjct: 210 GMQVLATAADGEVDLAEADLSQPTAWLFGNEAHGLG-ELLDEADMRVRIPILGRAESLNL 268 Query: 266 SNAAAVALYITQNHFAK 282 + AA++ LY + + Sbjct: 269 ATAASICLYESVKQQNR 285 >gi|227833180|ref|YP_002834887.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] gi|227454196|gb|ACP32949.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] Length = 266 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 102/257 (39%), Gaps = 6/257 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + ++ + E + G + V AA++ S + T+ A R Sbjct: 14 PRIINAAKLH-RAASRRKAERFLIEGENAVDAAVSTGSATD--VFVTEKAAERFAHIVQT 70 Query: 88 PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V + + + A+ L + +L+ V ++P Sbjct: 71 CGYMDVYVHPITDKAAKHLSDTATSTGLFAVCRPVLWTAGKILAGKPRLVSVPVLTSEPG 130 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G ++R++ A DG+I +A++++G+L HIP R N+ D L K+ S Sbjct: 131 NAGTLIRTSDAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVARDPNIKDVLGKLRSS 190 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G Q + ++D + L + + A + G E GL + + A + + G ++LN+ Sbjct: 191 GMQVLATAADGEVDLAEADLSQPTAWLFGNEAHGLG-ELLDEADMRVRIPILGRAESLNL 249 Query: 266 SNAAAVALYITQNHFAK 282 + AA++ LY + + Sbjct: 250 ATAASICLYESVKQQNR 266 >gi|294628442|ref|ZP_06707002.1| rRNA methylase [Streptomyces sp. e14] gi|292831775|gb|EFF90124.1| rRNA methylase [Streptomyces sp. e14] Length = 286 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 93/269 (34%), Gaps = 11/269 (4%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN---PSRKIFQLLATKNALA 79 + + +++ + G V A + + +L AT +A Sbjct: 9 ISPRSSRVSAARRLARRN-FRGKDRLFLAEGPQAVREAAGHRHGGQATLVELFATLDAAE 67 Query: 80 RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137 R V + I I + + +L+ V Sbjct: 68 RYADIIGEARTAGARVHLAADEVIADISTTVTPQGLVGVCRFLDTPFADILAARPRLVAV 127 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L HV DP N G +LR A A D ++ T + +++ G+L H+P + Sbjct: 128 LAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKAVRASVGSLFHLPVAVGVPVEQ 187 Query: 198 ALQKMHSWGFQTIGLS----SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 A+ + G + + D L+ A + G E GL T+ A ++ Sbjct: 188 AVAGLKDAGVRILAADGAGEHDLDDELDDNTMGGPTAWVFGNEAWGLPEDTRALADAVVR 247 Query: 254 LHMPGIIKALNVSNAAAVALYITQN-HFA 281 + + G+ ++LN++ AAAV LY + A Sbjct: 248 VPIHGMAESLNLATAAAVCLYASARAQRA 276 >gi|170783051|ref|YP_001711385.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] gi|169157621|emb|CAQ02819.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] Length = 357 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 70/248 (28%), Positives = 110/248 (44%), Gaps = 11/248 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTV 96 R Q E+ + G ++V AL P+ ++ + + PV V Sbjct: 100 RRAKQQDESEVVTGRNSVVEALRAKIPATALYIASRIEYDDRVKEVLSLATGRGIPVLEV 159 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGA 149 +D+I G +AVHQGLAL+ P L++ LD + DP N+GA Sbjct: 160 MRPELDRIAGHDAVHQGLALKVPPYEYADAIELLDKTISRGQVPLMVALDGITDPRNLGA 219 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+RS AF G+I +R S +A K+++GA P SNLT L+ + G Sbjct: 220 IIRSVAAFGGHGVIVPQRRSVGLTASAWKTSAGAAARTPVAMASNLTQTLKALKQRGVFV 279 Query: 210 IGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL L + + I +++G+EGKGL ET ++ + + ++LN A Sbjct: 280 VGLDGGGDMSLHEFTLADRPIVVVVGSEGKGLSRLVTETCDTIVSIPIGASTESLNAGIA 339 Query: 269 AAVALYIT 276 A+V LY Sbjct: 340 ASVTLYEI 347 >gi|227879319|ref|ZP_03997185.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus crispatus JV-V01] gi|256849114|ref|ZP_05554547.1| tRNA-rRNA methyltransferase [Lactobacillus crispatus MV-1A-US] gi|262047595|ref|ZP_06020550.1| TrmH family RNA methyltransferase [Lactobacillus crispatus MV-3A-US] gi|227861088|gb|EEJ68741.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus crispatus JV-V01] gi|256713890|gb|EEU28878.1| tRNA-rRNA methyltransferase [Lactobacillus crispatus MV-1A-US] gi|260572171|gb|EEX28736.1| TrmH family RNA methyltransferase [Lactobacillus crispatus MV-3A-US] Length = 251 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 110/247 (44%), Gaps = 13/247 (5%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101 F++G H L + KI ++ V+ VP + Sbjct: 3 SNKDFVFGRHAGLDYLKTQSADKINKVFLQHGVQEEFANQVYSLAKKKRLVVQDVPKNKL 62 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSA 154 D++V HQGL L + LD L++LD + DPHN+G+ILRSA Sbjct: 63 DRLVA-GGNHQGLVLAISSFEYADLDQLLDKYDAEGKEPFLLMLDSIEDPHNLGSILRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A DGII KR++ ++V+AK+++GA++++P R++NL +++ G+ G Sbjct: 122 DATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWVFGTDM 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E K L++G EGKG+ P ++ L M G +++LN S A V LY Sbjct: 182 AGTDYREWN-AQGKTVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQSLNASVATGVLLY 240 Query: 275 ITQNHFA 281 N Sbjct: 241 QAYNSRN 247 >gi|157693283|ref|YP_001487745.1| SpoU rRNA methylase family [Bacillus pumilus SAFR-032] gi|157682041|gb|ABV63185.1| possible SpoU family rRNA methyltransferase [Bacillus pumilus SAFR-032] Length = 247 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 96/266 (36%), Gaps = 31/266 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ I K H + ++ + G+H V A Sbjct: 1 MKYIESAKNTHIKQWKKLHTK-------------------KERTKTGLFLVEGIHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + K + + + +D D + + + + E A+ T Sbjct: 42 LKSRAVKELMVTSPDKLPSHIDPD------IELYELSEEAFFAMTETETPQHIAAVCT-- 93 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + L++LD V DP N+G ++R+A A D +I + + +SA Sbjct: 94 ---VPVFEEKKYERLLLLDAVQDPGNLGTLIRTADAAGLDAVILGDGTVDAYNGKTLRSA 150 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P ++ S ++ K + ALI+G EG G+ Sbjct: 151 QGSHFHLPILKQSLQQTIAACKEQGIPVYGSA-LNNAKAYKSVTAEGPFALIVGNEGGGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVS 266 P+ + ++ M G ++LNV+ Sbjct: 210 NPEILQMTDHNLYVPMYGQAESLNVA 235 >gi|302343505|ref|YP_003808034.1| RNA methyltransferase, TrmH family, group 3 [Desulfarculus baarsii DSM 2075] gi|301640118|gb|ADK85440.1| RNA methyltransferase, TrmH family, group 3 [Desulfarculus baarsii DSM 2075] Length = 248 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 12/248 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTI 101 + + + G H V+ AL + ++ LL + +A V+ + + + Sbjct: 2 ERRDDLIVGRHAVAEALADQAQTAIALLVVAGQRSEAVGRLVEAARAAGLKVEKIERRRL 61 Query: 102 DKIVGKEAVHQGLALET--------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 D++ G AVHQG+AL L L+ L++V+DHV DPHN+GA+LRS Sbjct: 62 DQMAG-GAVHQGVALRVAAQGRYAAWDELLAVLEEAGRRALVLVVDHVQDPHNLGAMLRS 120 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A G++ K + + +AK+A+GAL + R++N++ AL + G ++ Sbjct: 121 AAAAGALGVVVPKDRACQLTPAVAKAAAGALGQVAVCRVANISQALAGLKEIGLWSVAAV 180 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + +A+++G+E KG+ P Q+ +A L + +++LN S AA V L Sbjct: 181 ARGGAAPWALDLRGPLAVVVGSEHKGVAPLVQKNCDMLATLPLAAGVESLNASVAAGVML 240 Query: 274 YITQNHFA 281 + Sbjct: 241 MEVVRQRS 248 >gi|239940054|ref|ZP_04691991.1| putative rRNA methylase [Streptomyces roseosporus NRRL 15998] gi|239986543|ref|ZP_04707207.1| putative rRNA methylase [Streptomyces roseosporus NRRL 11379] Length = 281 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 80/247 (32%), Gaps = 11/247 (4%) Query: 45 QPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPP 98 + G V A + + +L AT A R H V Sbjct: 28 KERRFIAEGPQAVREAAAHRGGDGEPTLIELFATPEAADRYADIVEAAHTAGARVHLADA 87 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + + + + L+ VL +V DP N G +LR A A Sbjct: 88 DVLADVSQTVTPQGLIGVCRFLDSPFQEILDARPTLVAVLANVRDPGNAGTVLRCADAAG 147 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPY----IRISNLTDALQKMHSWGFQTIGLSS 214 D +I T + +++ G+L H+P + + Sbjct: 148 ADAVILTDASVDLYNPKSVRASVGSLFHLPVAVGVPVDQAVQGLRDAGVRILAADGAGAD 207 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D L+ A I G E GL +T+ A ++ + + G ++LN++ AAAV LY Sbjct: 208 DLDDELDAGTMGTPTAWIFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 267 Query: 275 ITQN-HF 280 + Sbjct: 268 ASARAQR 274 >gi|288926613|ref|ZP_06420528.1| RNA methyltransferase, TrmH family [Prevotella buccae D17] gi|288336582|gb|EFC74953.1| RNA methyltransferase, TrmH family [Prevotella buccae D17] Length = 273 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 95/248 (38%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + + + + ++ + AL+ + L K+ Sbjct: 17 FSTLTEAQLRHQVDAERGLFIAESPKVIQVALDKGCEPLALLCEHKHIAGDAAAIIARCG 76 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T P + + G L PLL + R ++ ++V+ V D NIGA Sbjct: 77 DLPVYTGPRPVLAALTGYTLTRGVLCAMRRPLLPDVKEVCRGARRVVVIHGVVDTTNIGA 136 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T+ + + + G++ +P+ + + +L ++ Sbjct: 137 IFRSAAALGIDAVLLTRDSCDPLNRRAVRVSMGSVFLVPWTWLDDSIASLSRLGFRTAAM 196 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 ++A+++G EG GL +T E A + + M + +LNV+ A+ Sbjct: 197 ALTDRSVPLDDPALATEPRLAIVMGTEGDGLPRETIEQADYVVRIPMAHGVDSLNVAAAS 256 Query: 270 AVALYITQ 277 AVA + + Sbjct: 257 AVAFWQLR 264 >gi|21220094|ref|NP_625873.1| rRNA methylase [Streptomyces coelicolor A3(2)] gi|3581852|emb|CAA20808.1| putative rRNA methylase [Streptomyces coelicolor A3(2)] Length = 282 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 91/266 (34%), Gaps = 9/266 (3%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 + + +++ + G V A + +L AT A R Sbjct: 9 ISPRSPRVAAARRLGKRN-FRGKERLFLAEGPQAVREAAGYGDMLV-ELFATVEAAERYA 66 Query: 83 WDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 V I+ I + + +L+ VL H Sbjct: 67 DIVGAAREVGARVHLAADAVIEDISTTVTPQGLVGVCRFLDTPFDEILAARPKLVAVLAH 126 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N G +LR A A + ++ T + +++ G+L H+P + A+ Sbjct: 127 VRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLFHLPVAVGVPVERAVA 186 Query: 201 KMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + G + + + L+ E A + G E GL +T+ ++ + + Sbjct: 187 GLREAGVRVLAADGAGEDDLDTELDAGTMGGPTAWVFGNEAWGLPEETRALTDAVLRVPI 246 Query: 257 PGIIKALNVSNAAAVALYITQN-HFA 281 G ++LN++ AAAV LY + A Sbjct: 247 HGKAESLNLATAAAVCLYASARAQRA 272 >gi|296394203|ref|YP_003659087.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985] gi|296181350|gb|ADG98256.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM 44985] Length = 295 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 91/277 (32%), Gaps = 20/277 (7%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 L R + + G + V AA+ K ++ A++ A Sbjct: 13 LTAQSRRVVEAAKLLSSP-GRRKAGEFLAEGPNNVRAAITTG--KALEIFASEAAAHEHS 69 Query: 83 WDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL--------LSPTLDAVRNS 132 PV V + K+ +A + ++ Sbjct: 70 ELIAAAGEAGIPVCCVDDRAARKLTDAVTPVGLVARCALLDCSLPQALGPQDDWEKPGHA 129 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L++VL DP N+G LR+A AF + + A+S++G+L +P +R Sbjct: 130 PLVVVLVEPRDPGNVGTALRAAHAFGASAFLVLGDGVDPHNPKAARSSAGSLFAVPVVRE 189 Query: 193 SNLTDA--LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ A + +D + + A + G E GL + A Sbjct: 190 RDVAAALGQLRDAGLLLFATTADADLPLDEAESLLQRPCAWLFGNEASGLPEPAAQAADR 249 Query: 251 MAHLHMPGI-----IKALNVSNAAAVALYITQNHFAK 282 + M I++LN++ AA + LY T ++ Sbjct: 250 RIAVPMRPTPGFAPIESLNLAVAAGICLYETARQRSR 286 >gi|269217194|ref|ZP_06161048.1| RNA methyltransferase, TrmH family, group 3 [Slackia exigua ATCC 700122] gi|269129331|gb|EEZ60416.1| RNA methyltransferase, TrmH family, group 3 [Slackia exigua ATCC 700122] Length = 263 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 108/245 (44%), Gaps = 17/245 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN--ALARLDWDANLPHPFPVKTVP--PQTIDKIV 105 ++ G V AL + I ++L N ++ F V+ VP + +D Sbjct: 4 YIEGKRPVIEALRS-EMPIRRVLIADNLKRDGQVADILRKARKFDVEVVPVPRKELDAKS 62 Query: 106 GKEAVHQGLALETAPLLSPTLDA-----------VRNSQLLMVLDHVNDPHNIGAILRSA 154 + HQG+ ET P + + L++VLDH+ D N+GAI RSA Sbjct: 63 -ERGSHQGVMAETGPYRYASPSDILDEAERHAVDHGGAALVVVLDHITDAGNLGAIARSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 GII + S S +A KS++G++ H+ +++NL L+++ GF G S Sbjct: 122 EVVGASGIIIPNKRSVSVTAATYKSSAGSINHLKIAQVANLNAVLERLKKNGFWVAGASE 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + KIAL++G EG G+ Q+ + L G + +LNV+ A+ +Y Sbjct: 182 QAHHTVWKAPLYGKIALVMGNEGSGISHLMQDNCDFLVKLPQEGKVGSLNVAQASTAVMY 241 Query: 275 ITQNH 279 Sbjct: 242 EWLRQ 246 >gi|291559697|emb|CBL38497.1| rRNA methylases [butyrate-producing bacterium SSC/2] Length = 273 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 90/244 (36%), Gaps = 6/244 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + A I L+ ++ + PV T + Sbjct: 29 YEPDLGIFIAESPKVIQTAFEQGYEPISFLVEDRHIKTQAKDIILQYQDIPVYTASFDVL 88 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++ G L L +++ +++L++V +P N+GAI RSA A + D Sbjct: 89 KQLTGFGLTRGMLCAMRRKPLPALETICDHAKRIVILENVMNPTNVGAIFRSAAALNMDA 148 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD------ 215 I+ +K S + + G + IP+ + + T MH + Sbjct: 149 ILLSKGCSDPLYRRSVRVSMGTVFQIPWTFLGDDTWPADGMHRLKELGYKNVAMALTARS 208 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 E + DK+A+ILG EG GL +T + + M + +LNV+ A+AVA + Sbjct: 209 VSIDDEALMSEDKLAIILGTEGDGLCQETIDACDYTVKIPMAHGVDSLNVAAASAVAFWQ 268 Query: 276 TQNH 279 Sbjct: 269 LAKR 272 >gi|255975196|ref|ZP_05425782.1| rRNA methylase [Enterococcus faecalis T2] gi|307285815|ref|ZP_07565949.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0860] gi|255968068|gb|EET98690.1| rRNA methylase [Enterococcus faecalis T2] gi|306502576|gb|EFM71843.1| RNA 2'-O ribose methyltransferase substrate binding protein [Enterococcus faecalis TX0860] Length = 258 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 95/238 (39%), Gaps = 3/238 (1%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + + G H V A+ + + L + W A + V + + Sbjct: 23 YREELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTWLAEQETE-KLIFVSDEVL 81 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + LA+ T + + LL+ D++ DP N+G ++R+A A G Sbjct: 82 NSLSELPTSQGILAIVTLETQQEQSLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAG 139 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I K + + + +S G+ H+P ++ +++ Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYY 199 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ + ALILG EG G+ P+ T ++ M G ++LNV+ AA V ++ +N+ Sbjct: 200 EQEAVENYALILGNEGSGVLPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257 >gi|34541459|ref|NP_905938.1| RNA methyltransferase [Porphyromonas gingivalis W83] gi|34397776|gb|AAQ66837.1| RNA methyltransferase, TrmH family [Porphyromonas gingivalis W83] Length = 249 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 11/238 (4%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++G+H++S A KIF K + PV VP + +D++ Sbjct: 7 IFGLHSISEAFEAGKEIDKIFIRRGLKTEQTEAIIREAVERCVPVMHVPIEKLDRLTS-- 64 Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ + + LD + L++LD + D N GAI R+A D Sbjct: 65 KNHQGVVAILSAIEYTRLDQLMPMLYEEGKAPFLLLLDGITDVRNFGAIARTAECAGVDA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II +R S S K+++GAL IP R++++ A++ + +G + + S + Sbjct: 125 IIIPERGSVSVGGDAIKTSAGALHRIPVCRVTSIPGAIRSLQEYGIRIVAASEKAADLYT 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +++GAE G P T A + + G I +LNVS AA + +Y Sbjct: 185 DVPMKLPLGIVMGAEDVGPSPDTLRMADGIVAIPQMGAIGSLNVSVAAGIVIYEVVRQ 242 >gi|255324641|ref|ZP_05365758.1| 23S ribosomal RNA methyltransferase [Corynebacterium tuberculostearicum SK141] gi|255298547|gb|EET77847.1| 23S ribosomal RNA methyltransferase [Corynebacterium tuberculostearicum SK141] Length = 267 Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 50/253 (19%), Positives = 101/253 (39%), Gaps = 6/253 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + ++ + + + + G + V AA++ + + T+ A R Sbjct: 14 PRIVNAAKLH-RAANRKKAKQFLIEGENAVDAAVSTGAAVD--VFVTEKAAERFGDIITA 70 Query: 88 PH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V + + + AL L S L+ V ++P Sbjct: 71 CGYMGVYVHPITDKAAKHLSDTATTTGLFALCKPVLWSAGKILNGKPSLVSVPVLTSEPG 130 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G ++R++ A DG+I S +A++++G+L H+P R N+ D L ++ Sbjct: 131 NAGTLIRTSDAMGADGVIFAGETVDPLSCKVARASAGSLFHVPVARDPNIKDVLGQLRKS 190 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G Q + ++D + L + + A + G E GL + E A + + G ++LN+ Sbjct: 191 GMQIVATAADGEVDLAEADLSQPTAWLFGNEAHGLG-ELLEEADMRVRIPLRGRAESLNL 249 Query: 266 SNAAAVALYITQN 278 + AA++ LY + Sbjct: 250 ATAASICLYESAK 262 >gi|311740492|ref|ZP_07714319.1| TrmH family rRNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304012|gb|EFQ80088.1| TrmH family rRNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 267 Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 50/253 (19%), Positives = 101/253 (39%), Gaps = 6/253 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + ++ + + + + G + V AA++ + + T+ A R Sbjct: 14 PRIVNAAKLH-RAANRKKAKQFLIEGENAVDAAVSTGAAVD--VFVTEKAAERFGDIITA 70 Query: 88 PH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V + + + AL L S L+ V ++P Sbjct: 71 CGYMGVYVHPITDKAAKHLSDTATTTGLFALCKPVLWSAGKILNGKPSLVSVPVLTSEPG 130 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G ++R++ A DG+I S +A++++G+L H+P R N+ D L ++ Sbjct: 131 NAGTLIRTSDAMGADGVIFAGETVDPLSCKVARASAGSLFHVPVARDPNIKDVLGQLRKS 190 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G Q + ++D + L + + A + G E GL + E A + + G ++LN+ Sbjct: 191 GMQIVATAADGEVDLAEADLSQPTAWLFGNEAHGLG-ELLEEADMRVRIPLRGRAESLNL 249 Query: 266 SNAAAVALYITQN 278 + AA++ LY + Sbjct: 250 ATAASICLYESAK 262 >gi|15835298|ref|NP_297057.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg] gi|270285471|ref|ZP_06194865.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg] gi|270289482|ref|ZP_06195784.1| spoU rRNA methylase family protein [Chlamydia muridarum Weiss] gi|301336868|ref|ZP_07225070.1| spoU rRNA methylase family protein [Chlamydia muridarum MopnTet14] gi|8163291|gb|AAF73591.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg] Length = 265 Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 88/263 (33%), Gaps = 8/263 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 +N+ K + K + L G + AL + + + D D Sbjct: 6 KNNARVK--AALALKRQRARNSSYFLLEGFREIHRALISGYHCLHVFCGELISDKERDLD 63 Query: 85 ANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLD 139 L P + ++++ KE +A+ L ++++ Sbjct: 64 KELTALGIEKLPCPKEILERLSFKEHPDNFIAVFEKKRLSCQEFLRLQRKNQQPFYLIVE 123 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 P NIGA+LR A DG+I + + +S+ GA+ +P + S Sbjct: 124 QAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGAVFTVPIWQASLEEVLA 183 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 S +Q +A++ G+E GL P + + L M G Sbjct: 184 LVREQEWKIFTTTPSTQTFYFDQN-FCQPLAVVFGSEKDGLSPSWLDGSFCNIALPMLGK 242 Query: 260 IKALNVSNAAAVALYITQNHFAK 282 +LN+S++ A Y ++ Sbjct: 243 ADSLNLSSSVAAVAYEVVRQRSR 265 >gi|317499573|ref|ZP_07957836.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893122|gb|EFV15341.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA] Length = 273 Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 89/244 (36%), Gaps = 6/244 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + A I L+ ++ + PV T + Sbjct: 29 YEPDLGIFIAESPKVIQTAFEQGYEPISFLVEDRHIKTQAKDIILQYQDIPVYTASFDVL 88 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++ G L L +++ +++L++V +P N+GAI RSA A + D Sbjct: 89 KQLTGFGLTRGMLCAMRRKPLPALETICDHAKRIVILENVMNPTNVGAIFRSAAALNMDA 148 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH------SWGFQTIGLSSD 215 I+ +K S + + G + IP+ + + T M+ Sbjct: 149 ILLSKGCSDPLYRRSVRVSMGTVFQIPWTFLGDDTWPADGMYRLKELGYKNVAMALTDRS 208 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 E + DK+A+ILG EG GL +T + + M + +LNV+ A+AVA + Sbjct: 209 VSIDDEALMSEDKLAIILGTEGDGLCQETIDACDYTVKIPMAHGVDSLNVAAASAVAFWQ 268 Query: 276 TQNH 279 Sbjct: 269 LAKR 272 >gi|296112249|ref|YP_003626187.1| SpoU family rRNA methylase [Moraxella catarrhalis RH4] gi|295919943|gb|ADG60294.1| SpoU family rRNA methylase [Moraxella catarrhalis RH4] gi|326560717|gb|EGE11085.1| SpoU family rRNA methylase [Moraxella catarrhalis 46P47B1] gi|326561758|gb|EGE12093.1| SpoU family rRNA methylase [Moraxella catarrhalis 7169] gi|326562300|gb|EGE12626.1| SpoU family rRNA methylase [Moraxella catarrhalis 103P14B1] gi|326563077|gb|EGE13350.1| SpoU family rRNA methylase [Moraxella catarrhalis 12P80B1] gi|326569018|gb|EGE19087.1| SpoU family rRNA methylase [Moraxella catarrhalis BC1] gi|326571709|gb|EGE21722.1| SpoU family rRNA methylase [Moraxella catarrhalis BC8] gi|326571838|gb|EGE21844.1| SpoU family rRNA methylase [Moraxella catarrhalis BC7] gi|326574377|gb|EGE24320.1| SpoU family rRNA methylase [Moraxella catarrhalis CO72] gi|326575504|gb|EGE25429.1| SpoU family rRNA methylase [Moraxella catarrhalis 101P30B1] gi|326578077|gb|EGE27937.1| SpoU family rRNA methylase [Moraxella catarrhalis O35E] Length = 290 Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 65/281 (23%), Positives = 120/281 (42%), Gaps = 20/281 (7%) Query: 19 HYAKLRRNHRDYK-----KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 + +++ +K K+ + +++ F YG+H VS + ++ L Sbjct: 2 KKRSQKTDNQSFKSSSKEKLNKPHHQAKPAKPKNPYF-YGIHAVSMLIKRRPEEVLGLFI 60 Query: 74 T------KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPT 125 ++ +L + ++ + + ++ G + +A Sbjct: 61 QLRDDGQMSSEHQLIVQSAKHFGISIQNAHRERLTELCGSQQHQGVVALARTAPMADETI 120 Query: 126 LDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 LD +++ L +VLD + D HN+GA LR+A A D +I + S + +AK + GA Sbjct: 121 LDNLLMQDDVLFLVLDQITDAHNLGACLRTACAMGVDAVILPRHQSAPITPTVAKVSVGA 180 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRP 242 E IP I ++NL L+KM G G + D E K+A+I+G+EG G+R Sbjct: 181 SEVIPVISVTNLARTLEKMKKSGVFIFGTALDKSAKPAFECDFGGKVAIIMGSEGDGMRR 240 Query: 243 KTQETATSMAHLHMPGIIK---ALNVSNAAAVALYITQNHF 280 TQ ++ ++ M ++ +LNVS A + LY Sbjct: 241 LTQTMCDTLVYIPMAEVLDRPQSLNVSVATGMVLYEVMRQR 281 >gi|315503474|ref|YP_004082361.1| RNA methyltransferase, trmh family, group 3 [Micromonospora sp. L5] gi|315410093|gb|ADU08210.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora sp. L5] Length = 371 Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 11/253 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKT 95 + + ++ L G + V +L P+ ++ + + + Sbjct: 117 RKANPAKDSPELLVGRNPVLESLRTQVPATALYTAQGIDVDDRVKEIIRTAADRGIAILE 176 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGA 149 V +D++ G +HQG+ L+ P D + + LL+ LD V DP N+GA Sbjct: 177 VSRAELDRMTG-GVLHQGVGLQVPPFAYEPFDDLVAAALEQAAPLLVALDGVTDPRNLGA 235 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ++RSA AF G+ +R + +A ++++GA +P +++NLT +L+ GF Sbjct: 236 VIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACKEAGFVV 295 Query: 210 IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL +D + L + +++G+EG+GL ET + M +++LN S A Sbjct: 296 VGLDADGQTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIPMVSDVESLNASVA 355 Query: 269 AAVALYITQNHFA 281 AAV L + Sbjct: 356 AAVTLAEVARRRS 368 >gi|148242427|ref|YP_001227584.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307] gi|147850737|emb|CAK28231.1| Possible tRNA/rRNA methyltransferase [Synechococcus sp. RCC307] Length = 442 Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 74/288 (25%), Positives = 132/288 (45%), Gaps = 18/288 (6%) Query: 8 KSEKIFS-LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ----PENLFLYGVHTVSAALN 62 ++ + + + R Y + S + N ++G+H A L Sbjct: 105 RNNRFDRGARSDRTDRGGRPAPRYGRPPSDANREPEAESLTPPEHNDLVWGLHASQAILE 164 Query: 63 NPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 + R I ++ T R V+ V + ++ G AVHQG+ L+T Sbjct: 165 S-ERPIHRIWCTPELRFRSRFLQLLREAKSSGVLVEEVTWARLAQLCG-GAVHQGIVLQT 222 Query: 119 APLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 A + L+ + +S LLM +D + DPHN+GAI+RSA A G++ +R S Sbjct: 223 AAAQTHDLETLIDSCAGLGEAPLLMAVDGLTDPHNLGAIVRSAEALGAHGLVLPQRRSAG 282 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + +AK A+GALEH+P R+ NL +L+++ G++ +GL+ + L + + + + Sbjct: 283 LTGSVAKVAAGALEHLPVARVVNLNRSLERLKDAGYRVVGLAEEGSATLAEADLDGPLVV 342 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G+EG+GL T+ + + + G+ +LN S A A+ LY Sbjct: 343 VTGSEGQGLSMLTRRHCDQLVRIPLRGVTPSLNASVATALLLYEVARR 390 >gi|42526951|ref|NP_972049.1| RNA methyltransferase [Treponema denticola ATCC 35405] gi|41817266|gb|AAS11960.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola ATCC 35405] Length = 258 Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 24/252 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQ----------LLATKNALARLDWDANLPHPFPVKTVPPQ 99 + G H + L KI + + + + +A ++ Q Sbjct: 4 IITGFHAIDEILRAEKLKIEKEKNRKPSLEIFYSKEGPRVKKILEAARKLNLKIEKKDNQ 63 Query: 100 TIDKIVG----KEAVHQGLALETAPLLSPTLDAVRNSQ---------LLMVLDHVNDPHN 146 +D + + H+G+ L T +V +++LD V DPHN Sbjct: 64 FLDSLTKTLPEQLRDHRGIVLVTEAENQKKGMSVDEFFAKLAEKGSAFVVILDSVTDPHN 123 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 G+I+RSA F DGII + S +++K ++GAL +P++ ++NL ++++ G Sbjct: 124 TGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAWVPFVEVTNLVRTVERLKKEG 183 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 F G + K L K LI+G EG+G+ +ET + + G + +LNVS Sbjct: 184 FWIYGADAG-GKALPNLTFPKKTVLIMGNEGRGMSRLVEETCDEIVSIPTKGKLDSLNVS 242 Query: 267 NAAAVALYITQN 278 AA + LY Sbjct: 243 VAAGILLYEISR 254 >gi|188995645|ref|YP_001929897.1| putative tRNA:rRNA methyltransferase [Porphyromonas gingivalis ATCC 33277] gi|188595325|dbj|BAG34300.1| putative tRNA:rRNA methyltransferase [Porphyromonas gingivalis ATCC 33277] Length = 249 Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 11/238 (4%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++G+H++S A KIF K + PV VP + +D++ Sbjct: 7 IFGLHSISEAFEAGKEIDKIFIRRGLKTEQTEAIIREAVERCVPVMHVPIEKLDRLTS-- 64 Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ + + LD + L++LD + D N GAI R+A D Sbjct: 65 KNHQGVVAILSAIEYTRLDQLIPMLYEEGKAPFLLLLDGITDVRNFGAIARTAECAGVDA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II +R S S K+++GAL IP R++++ A++ + +G + + S + Sbjct: 125 IIIPERGSISVGGDAIKTSAGALHRIPVCRVTSIPGAIRSLQEYGIRIVAASEKAADLYT 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +++GAE G P T A + + G I +LNVS AA + +Y Sbjct: 185 DVPMKLPLGIVMGAEDVGPSPDTLRMADGIVAIPQMGAIGSLNVSVAAGIVIYEVVRQ 242 >gi|124023282|ref|YP_001017589.1| rRNA methylase [Prochlorococcus marinus str. MIT 9303] gi|123963568|gb|ABM78324.1| rRNA methylase [Prochlorococcus marinus str. MIT 9303] Length = 536 Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 77/293 (26%), Positives = 132/293 (45%), Gaps = 20/293 (6%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL-------FLYGVHTV 57 S+++S++ + S + R R + S + E L+G H Sbjct: 128 SRRRSDERLGRRPSLGERSRPADRLLSSKRLDPSTSDRVPEAEAFGPAAADDLLWGRHAS 187 Query: 58 SAALNNPSRKIFQLLATKNAL--ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQG 113 AAL R I ++ T + R V+ V + ++ G AVHQG Sbjct: 188 QAALEAG-RPIHRIWCTSDLRSAPRFLQLLREAKSSGVLVEEVTWARLGQLTG-GAVHQG 245 Query: 114 LALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 + L+TA + L ++ LL+ LD + DPHN+GAI+RSA A G++ + Sbjct: 246 IVLQTAAAETLDLQSLIEGCAGLGESPLLLALDGLTDPHNLGAIIRSAEALGAHGVVLPQ 305 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R S + +AK A+GALEH+P R+ NL +L+ + G++ IGL+ + L + Sbjct: 306 RRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEALKQAGYRVIGLAEEGDITLPDVDLD 365 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + ++ G+E +G+ T+ + + + G+ +LN S A A+ LY Sbjct: 366 GPLVIVTGSEKQGISLLTRRHCDQLVRVPLRGVTPSLNASVATAMCLYEVARR 418 >gi|256397252|ref|YP_003118816.1| RNA methyltransferase, TrmH family, group 3 [Catenulispora acidiphila DSM 44928] gi|256363478|gb|ACU76975.1| RNA methyltransferase, TrmH family, group 3 [Catenulispora acidiphila DSM 44928] Length = 339 Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 67/269 (24%), Positives = 112/269 (41%), Gaps = 14/269 (5%) Query: 27 HRDYKKMQSFNQKSRHTS--QPENLFLYGVHTVSAALNN--PSRKIFQ-LLATKNALARL 81 + + + + E + G ++V AL P++ ++ + R Sbjct: 69 NPRSGAGTRGTSRPARRTPGKGEAEQVAGRNSVVEALRAHVPAKALYIAQYIDSDDRVRE 128 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQL 134 P+ P +D++ +HQG+ L P D ++ L Sbjct: 129 SMRLATELGVPLLEAPRHELDRMT-NGTLHQGVMLVMPPYEYAHPDDLLEEVFAAGDTPL 187 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 LD V DP N+GA++RS AF G+I +R + +A K+A+GA +P R N Sbjct: 188 FAALDGVTDPRNLGAVMRSVAAFGGHGVIVPERRAAGMTAGAWKAAAGAGARLPVARAGN 247 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 LT AL+ G GL++D P E EI + + L++G+EGKG+ E Sbjct: 248 LTRALEAYKKQGVMVAGLAADGSVPLHELEIATEPLCLVIGSEGKGMSRLVSELCDVTVS 307 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + ++LN AA +ALY A+ Sbjct: 308 IPIASTTESLNAGVAAGIALYEVNRRRAE 336 >gi|288931919|ref|YP_003435979.1| RNA methyltransferase, TrmH family, group 3 [Ferroglobus placidus DSM 10642] gi|288894167|gb|ADC65704.1| RNA methyltransferase, TrmH family, group 3 [Ferroglobus placidus DSM 10642] Length = 224 Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 104/228 (45%), Gaps = 8/228 (3%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 GV++++ AL + ++ ++ R+ V V + + KI + Sbjct: 5 GVNSIAEALKAG--VVNKIYVGEHINPRVAKILAEAKKQKVPIVKVKNLKKIEADVSP-- 60 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 ++ A+R + ++ LD V DP N+GA+LR+A F C G++ KR + Sbjct: 61 ---VKYYDFDFVVEKALRENGFILFLDSVQDPQNLGAVLRTAEFFGCSGVVIPKRRAAQV 117 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + + + + GA H+ R+ NL ++++K+ +GF +G K L +AL+ Sbjct: 118 TETVVEVSQGAAFHLKISRVENLANSIKKIKKYGFLVVGA-EIGGKDLRSVKFTPPLALV 176 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +G E +G+ ++ + + G +LN+S AA + LY + H Sbjct: 177 VGGEDRGISQPVKKMCDFLVEIKGVGKTPSLNLSVAAGILLYEVRRHL 224 >gi|82702991|ref|YP_412557.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC 25196] gi|82411056|gb|ABB75165.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC 25196] Length = 279 Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 105/273 (38%), Gaps = 22/273 (8%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ +K++ + SR L G+H V A K +L+A+++ + Sbjct: 6 SRDNPTFKELVKLRESSRQRRIAGLTLLDGIHLVEAYFALG--KPEKLVASESGRENPEI 63 Query: 84 DANLPHPFPVKTVPP--------------QTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 L V V + + V GL + Sbjct: 64 RFLLEKVTKVTQVTKGGGSHREAAAIVLPDLLFREVSTVKTATGLMAIVPIPSPEAIPLK 123 Query: 130 RNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + Q ++L+ + DP N+G+ILRSA A + + + + S ++A GA Sbjct: 124 KRGQAESFCVLLEAIQDPGNVGSILRSAAAAGASDVYLSNDCADAWSPKTLRAAMGAHFL 183 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + +NL + ++G + I D+KK L Q + +A + G EG GL + + Sbjct: 184 VRIHERANL---AEVARTFGGKVIASILDAKKSLYQMRLSGPVAFVFGNEGAGLSDELLQ 240 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + MPG ++LN + AAAV + Sbjct: 241 VAHERITIPMPGDAESLNAAAAAAVCFFERVRQ 273 >gi|15605128|ref|NP_219913.1| rRNA methylase [Chlamydia trachomatis D/UW-3/CX] gi|76789134|ref|YP_328220.1| 23S rRNA methyltransferase [Chlamydia trachomatis A/HAR-13] gi|3328830|gb|AAC68000.1| rRNA Methylase (SpoU family) [Chlamydia trachomatis D/UW-3/CX] gi|76167664|gb|AAX50672.1| 23S rRNA methyltransferase [Chlamydia trachomatis A/HAR-13] gi|296435924|gb|ADH18098.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/9768] gi|296436851|gb|ADH19021.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/11222] gi|296437785|gb|ADH19946.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/11074] gi|297140285|gb|ADH97043.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/9301] gi|297748533|gb|ADI51079.1| 23S rRNA methyltransferase [Chlamydia trachomatis D-EC] gi|297749413|gb|ADI52091.1| 23S rRNA methyltransferase [Chlamydia trachomatis D-LC] Length = 269 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 84/262 (32%), Gaps = 8/262 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 +N+ K + K + L G + AL + R A + D Sbjct: 6 KNNARVK--SALALKRQRARNSTYFLLEGFREIHRALISGYRCSHVFCGELIADKEIALD 63 Query: 85 ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLD 139 L ++K+ KE +A+ L + ++++ Sbjct: 64 RELTSLGIEKLYCSKDILEKLSFKENPENFIAVFEKKELSCQEFLGLQRKNQAPFYLIVE 123 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 P NIGA+LR A DG+I + + +S+ G + +P + S Sbjct: 124 QAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGTVFTMPVWQASLKEVLD 183 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 S +Q+ + ++ G+E GL P + L M G Sbjct: 184 LVHQQEWQVFTTTPSAQTFYFDQD-FCQPMVVVFGSEKDGLSPDWLNGSFCNIALPMLGK 242 Query: 260 IKALNVSNAAAVALYITQNHFA 281 +LN+S++ A Y + Sbjct: 243 ADSLNLSSSVAAVAYEVVRQRS 264 >gi|320547387|ref|ZP_08041676.1| TrmH family RNA methyltransferase [Streptococcus equinus ATCC 9812] gi|320447983|gb|EFW88737.1| TrmH family RNA methyltransferase [Streptococcus equinus ATCC 9812] Length = 246 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 55/274 (20%), Positives = 106/274 (38%), Gaps = 31/274 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + I K K R ++ + G H A Sbjct: 1 MTIITSKSNNLIKKTKKLLKKKYR---------------------EQSYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + ++ R++ +N V V P+ + ++ QG+ E A Sbjct: 40 EKANAEFLN-IFVLEDFADRVEHMSN------VTFVTPEVLKELTD-SKTPQGIIAEVAM 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + P + L++ + V DP N+G ++R+A A DG++ + + + + +S Sbjct: 92 PILPLANLKAGRYLVL--EDVQDPGNVGTMIRTADAAGLDGVLISDKSADIYNQKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R + + S + + AL++G EG G+ Sbjct: 150 QGSHFHLPVWRTNVYEACETLQNLGVPIIATTLSKDSVDYKTVKHDGNFALVMGNEGNGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K A +AH+ MPG ++LNV+ A + L+ Sbjct: 210 SNKMTNQADVLAHIIMPGQAESLNVAVATGIVLF 243 >gi|331701828|ref|YP_004398787.1| TrmH family RNA methyltransferase [Lactobacillus buchneri NRRL B-30929] gi|329129171|gb|AEB73724.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus buchneri NRRL B-30929] Length = 266 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 69/256 (26%), Positives = 119/256 (46%), Gaps = 16/256 (6%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT-----KNALARLDWDANLPHPF 91 ++ QPE + G H V AAL + + +L + + Sbjct: 10 HRSDDSQDQPEEFVI-GRHPVVAALKS-ENPVNKLFIQSGIKDDDNIISEIMKLAHKKRL 67 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDP 144 + VP Q +DK+ + HQG+ L A T+D ++LD++ DP Sbjct: 68 VISKVPKQKLDKLSNNQ-NHQGVVLSIAAFKYATIDDLFTNAKKQAVEPFFVILDNIEDP 126 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+G+I+R+A A GII K + +A ++K+++GA+E +P R++NL+ ++++ Sbjct: 127 HNLGSIIRTADAAGVSGIIIPKHRAVGLTATVSKTSAGAIERVPVARVTNLSATIKELKQ 186 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G G + K IA+I+G EGKG+ P ++ M + M G I++LN Sbjct: 187 RGMWVFGTDVSGTDYRRWDAK-GSIAVIIGNEGKGISPLLKKQVDEMLTIPMVGDIQSLN 245 Query: 265 VSNAAAVALYITQNHF 280 S AA++ +Y N Sbjct: 246 ASVAASILIYQGFNSR 261 >gi|237804750|ref|YP_002888904.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT] gi|231273050|emb|CAX09963.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT] Length = 269 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 85/262 (32%), Gaps = 8/262 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 +N+ K + K + L G + AL + R A + D Sbjct: 6 KNNARVK--SALALKRQRARNSTYFLLEGFREIHRALISGYRCSHVFCGELIADKEIALD 63 Query: 85 ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLD 139 L ++K+ KE +A+ L + ++++ Sbjct: 64 RELTSLGIEKLYCSKDILEKLSFKENPENFIAVFEKKELSCQEFLGLQRKNQAPFYLIVE 123 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 P NIGA+LR A DG+I + + +S+ G + +P + S Sbjct: 124 QAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGTVFTMPVWQASLKEVLD 183 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + S +Q+ + ++ G+E GL P + L M G Sbjct: 184 LVHQQEWQVFTTIPSAQTFYFDQD-FCQPMVVVFGSEKDGLSPDWLNGSFCNIALPMLGK 242 Query: 260 IKALNVSNAAAVALYITQNHFA 281 +LN+S++ A Y + Sbjct: 243 ADSLNLSSSVAAVAYEVVRQRS 264 >gi|184154739|ref|YP_001843079.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956] gi|183226083|dbj|BAG26599.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956] Length = 251 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 15/250 (6%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPP 98 T++ + F+ G H AAL + ++I ++ K + VP Sbjct: 2 KTNEENSEFIIGRHPAMAALKSD-QEINKVFIQKGLKTDAIAQLVKSAKERHLVISNVPK 60 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAIL 151 +D++ + HQG+AL A T+D ++LD + DPHN+G+IL Sbjct: 61 TKLDQMTAGQ-NHQGVALAVAAYQYATVDDLFENAAQKDEEPFFLILDELADPHNLGSIL 119 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A GII KR S ++V+AK+++GA+EH+P R++NL +++ G G Sbjct: 120 RTADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARVTNLVQVAKELQKRGVWLFG 179 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + K +AL++G EGKG+ P ++T M + M G +++LN S AA++ Sbjct: 180 TDMQGTDCRRWDAK-GAVALVIGNEGKGISPLLKKTCDEMLTIPMIGHVQSLNASVAASL 238 Query: 272 ALYI--TQNH 279 +Y H Sbjct: 239 LIYQGFATRH 248 >gi|255311209|ref|ZP_05353779.1| 23S rRNA methyltransferase [Chlamydia trachomatis 6276] gi|255317511|ref|ZP_05358757.1| 23S rRNA methyltransferase [Chlamydia trachomatis 6276s] Length = 269 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 83/262 (31%), Gaps = 8/262 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 +N+ K + K + L G + AL + R A + D Sbjct: 6 KNNARVK--SALALKRQRARNSTYFLLEGFREIHRALISGYRCSHVFCGELIADKEIALD 63 Query: 85 ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLD 139 L ++K+ KE +A+ L + ++++ Sbjct: 64 RELTSLGIEKLYCSKDILEKLSFKENPENFIAVFEKKELSCQEFLGLQRKNQAPFYLIVE 123 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 P NIGA+LR A DG I + + +S+ G + +P + S Sbjct: 124 QAEKPGNIGALLRIADGAGVDGAILCDPVVDLYNPNVIRSSLGTVFTMPVWQASLKEVLD 183 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 S +Q+ + ++ G+E GL P + L M G Sbjct: 184 LVHQQEWQVFTTTPSAQTFYFDQD-FCQPMVVVFGSEKDGLSPDWLNGSFCNIALPMLGK 242 Query: 260 IKALNVSNAAAVALYITQNHFA 281 +LN+S++ A Y + Sbjct: 243 ADSLNLSSSVAAVAYEVVRQRS 264 >gi|254995184|ref|ZP_05277374.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str. Mississippi] Length = 244 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 13/237 (5%) Query: 57 VSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAV-HQG 113 AAL NP+R +L T L + A + K V + I KI+G + HQG Sbjct: 2 CIAALQNPNRVCRDMLVTGEFLKKYPEVARMAQSKGVYPKRVAAEKISKILGHGGMAHQG 61 Query: 114 LALETAPLLSPTLDAVRNSQLL----------MVLDHVNDPHNIGAILRSAVAFSCDGII 163 +AL L +R ++ ++LD V D +N+GAI+RSA F D +I Sbjct: 62 IALMVDELSGRDGSKLRVEDIVSANPSEASTVVILDRVTDINNVGAIVRSAACFDADAVI 121 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + +SPSES + K++SGA + +P +++ NL ++ + G+ G+ + K L + Sbjct: 122 LPEHHSPSESCTITKASSGAADIVPVVQVGNLVKTMEYLKQNGYWCYGMDAGGDKALHEI 181 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ A+ILG+EGKG+R T+E + + M I +LNVSNAAA+ALY + Sbjct: 182 SFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALYSSYLQL 238 >gi|256844498|ref|ZP_05549984.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN] gi|293381069|ref|ZP_06627090.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus crispatus 214-1] gi|312977948|ref|ZP_07789694.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus crispatus CTV-05] gi|256613576|gb|EEU18779.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN] gi|290922369|gb|EFD99350.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus crispatus 214-1] gi|310895255|gb|EFQ44323.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus crispatus CTV-05] Length = 251 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 111/247 (44%), Gaps = 13/247 (5%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101 F++G H L + KI ++ V+ VP + Sbjct: 3 SNKDFVFGRHAGLDYLKTQSADKINKVFLQHGVQEEFANQVYSLAKKKRLVVQDVPKNKL 62 Query: 102 DKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSA 154 D++V HQGL L + L DA L++LD + DPHN+G+ILRSA Sbjct: 63 DRLVA-GGNHQGLVLAISSFEYADLNQLLDKYDAEGKEPFLLMLDSIEDPHNLGSILRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A DGII KR++ ++V+AK+++GA++++P R++NL +++ G+ G Sbjct: 122 DATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWVFGTDM 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E K L++G EGKG+ P ++ L M G +++LN S A V LY Sbjct: 182 AGTDYREWN-AQGKTVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQSLNASVATGVLLY 240 Query: 275 ITQNHFA 281 N Sbjct: 241 QAYNSRN 247 >gi|58617359|ref|YP_196558.1| putative RNA methyltransferase [Ehrlichia ruminantium str. Gardel] gi|58416971|emb|CAI28084.1| Hypothetical tRNA/rRNA methyltransferase [Ehrlichia ruminantium str. Gardel] Length = 249 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 131/239 (54%), Gaps = 10/239 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQT 100 + +++YG H AAL N +RK +LL T+N + + + K V T Sbjct: 3 KKKIWIYGKHPCVAALQNINRKCHELLVTENFIKHNNGIQKIRELSKQKNIYPKQVNINT 62 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAV 155 I+ ++ + HQG+AL+ + + + +++ +++LD V D +N+G+I+RSAV Sbjct: 63 INSVLPPNSNHQGIALQVSIVDTVSIEDVLSNIPTEISTIILLDQVTDVYNVGSIIRSAV 122 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F+ +I SPSE+ ++K++SGA++ IP + + N+++A+ + G+ G + Sbjct: 123 CFNVHAVILPYYNSPSENCGMSKTSSGAIDMIPIVYVVNISNAIHTLKKAGYWCYGFDAK 182 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +PL + ++K +I G+E KGLR T+E + + I +LNVSNAAA+ALY Sbjct: 183 QGEPLHKIKLDNKRLVIFGSENKGLRTLTKENCDFLLKIATSERIDSLNVSNAAAIALY 241 >gi|323126636|gb|ADX23933.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 245 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 90/231 (38%), Gaps = 10/231 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + + + G H A + + + + R+ V V + + Sbjct: 22 HRQHSYLIEGWHLFEEAQQSG-QGFRHIFVLEELAERVADQE------KVVLVSADVLKE 74 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + + +A P L+ D ++L+ V DP N+G I+R+A A DG+ Sbjct: 75 LTDSPSPQGIIAEVDMPQLAFPTDYQGKY---LILEDVQDPGNLGTIIRTADAAGFDGVF 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +++ + ++ +S G+ H+P R + S + Sbjct: 132 LSEKSADVYNSKTLRSMQGSHFHLPIWRTDIYKICREMQEHNTPVLATTLSKVSVDYKTV 191 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + AL++G EG+G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 192 PHQESFALVMGNEGQGISAEMTILADQLVHITMPGQAESLNVAVAAGILIF 242 >gi|148993166|ref|ZP_01822732.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP9-BS68] gi|147928140|gb|EDK79158.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae SP9-BS68] Length = 236 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 96/247 (38%), Gaps = 13/247 (5%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 K + +QK ++ + G H A+ I ++ A +N +L Sbjct: 2 VKNAKKLHQK-KYRKSA--YLIEGWHLFEEAVQAGVT-IEKIFALENYRNQLAA------ 51 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 FP + I + QG+ D + L + + V DP N+G Sbjct: 52 -FPQTVWISEDILLDLADSQTPQGIVAVVQKEEVGQADLSQGKFLFL--EDVQDPGNVGT 108 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A G+I + + + S +S G+ H+P R+++ + Sbjct: 109 IIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVL 168 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 S + + L++G EG+G+ P E+A + H+ M G ++LNV+ AA Sbjct: 169 ATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAA 228 Query: 270 AVALYIT 276 + ++ Sbjct: 229 GILIFYL 235 >gi|297621986|ref|YP_003710123.1| putative 23S rRNA (guanosine-2'-O-)- methyltransferase [Waddlia chondrophila WSU 86-1044] gi|297377287|gb|ADI39117.1| putative 23S rRNA (guanosine-2'-O-)- methyltransferase [Waddlia chondrophila WSU 86-1044] Length = 242 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 108/236 (45%), Gaps = 5/236 (2%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + ++ G + + L++ +I + K L +K Q + +V Sbjct: 2 QKKYWIMGKNCIETILDHSPERIIEFFTAKKDSDPLLEKV-RSKGIKIKLASKQKLFDLV 60 Query: 106 GKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 ++ HQ + SP L N +L+++LD++NDP N+GAILR+A F D +I Sbjct: 61 NSDS-HQSYVALVKAVDSPDLKQFLRENHRLVLMLDNINDPQNLGAILRAAECFGVDAVI 119 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 +K S + AK+ GA E +P I +SN + S F SD PL Sbjct: 120 WSKNRGCSLTPSAAKAGVGASELVPTIVVSNLAETVKKFQKSGYFAVTAEISDRASPLNA 179 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K LI+G+EGKG++P + A ++ M G I +LNVS A AV L Q Sbjct: 180 FQFPEKTLLIMGSEGKGIQPLISKLADEQVYIPMSGKIDSLNVSQATAVLLSHYQK 235 >gi|124025638|ref|YP_001014754.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. NATL1A] gi|123960706|gb|ABM75489.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. NATL1A] Length = 442 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 71/287 (24%), Positives = 131/287 (45%), Gaps = 17/287 (5%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQS---FNQKSRHTSQPENLFLYGVHTVSAALN 62 + E+ S ++ K + YK+ ++ + + + ++G H+ AAL Sbjct: 132 SNRFER-KSTNPAYRNKNSQRASSYKREENNEPLSYSESFSKTLSDDLIWGRHSTEAAL- 189 Query: 63 NPSRKIFQLLATKNAL--ARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 R I ++ T + V+ V + ++ AVHQG+ L+ Sbjct: 190 VGGRAIHRIWCTSELRSTPKFFQLLKDQKASGVLVEEVSWSRLGQLT-NGAVHQGIVLQI 248 Query: 119 APLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 A + L + ++ LL+ LD + DP N+GAI+RSA A G+I +R S Sbjct: 249 AASKTLDLKNLIDACKAFGDSSLLLALDGLTDPQNLGAIIRSAEALGAQGLILPQRRSAG 308 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + +AK A+GALEH+P R+ NL +L+K+ G+ +GL+ + L + + + Sbjct: 309 LTGSVAKVAAGALEHLPVARVVNLNRSLEKLKDEGYTVVGLAEEGSSTLSEIKFQGPLVV 368 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++G+E KG+ T+ + + + G+ +LN S A ++ LY Sbjct: 369 VVGSEDKGISLITRRLCDQLVRIPLKGVTTSLNASVATSIFLYEVAR 415 >gi|295692213|ref|YP_003600823.1| RNA methyltransferase, trmh family, group 3 [Lactobacillus crispatus ST1] gi|295030319|emb|CBL49798.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus crispatus ST1] Length = 251 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 13/247 (5%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101 F++G H L + KI ++ V+ VP + Sbjct: 3 SNKDFVFGRHAGLDYLKTQSADKINKVFLQHGVQEEFANQVYSLAKKKRLVVQDVPKNKL 62 Query: 102 DKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSA 154 D++V HQGL L + L DA L++LD + DPHN+G+ILRSA Sbjct: 63 DRLVA-GGNHQGLVLAISSFEYADLNQLLDKYDAEGKEPFLLMLDSIEDPHNLGSILRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A DGI+ KR++ ++V+AK+++GA++++P R++NL +++ G+ G Sbjct: 122 DATGVDGIVIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWVFGTDM 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E K L++G EGKG+ P ++ L M G +++LN S A V LY Sbjct: 182 AGTDYREWN-AQGKTVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQSLNASVATGVLLY 240 Query: 275 ITQNHFA 281 N Sbjct: 241 QAYNSRN 247 >gi|108799944|ref|YP_640141.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS] gi|119869054|ref|YP_939006.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS] gi|108770363|gb|ABG09085.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS] gi|119695143|gb|ABL92216.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS] Length = 248 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 92/236 (38%), Gaps = 5/236 (2%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + G + V AAL + ++ AT++A AR V V + Sbjct: 13 RRRAARFLAEGPNLVEAALRRG--VVSEVFATEDAAARFAALLAGA---DVHLVTERAAK 67 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A+ P +S + +L+ V ++P N G ++R A A D + Sbjct: 68 ALSDTVTPVGLVAVCRMPEVSLDEVLGASPRLVAVAVETSEPGNAGTLIRLADAMGADAV 127 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + ++++G++ + + + + +H G + D + L+ Sbjct: 128 ILAGNSVDPYNGKCLRASAGSIFGVSVVEAPDTAGLVAALHGAGLTVLATMLDGEVSLDD 187 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + A + GAE GL P A + + M G ++LNV+ AAA+ LY + Sbjct: 188 AELSGPTAWLFGAEAHGLAPDVAALADARVTIPMAGSAESLNVAAAAAICLYQSAR 243 >gi|183601561|ref|ZP_02962931.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|219683904|ref|YP_002470287.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|241190940|ref|YP_002968334.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196346|ref|YP_002969901.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219167|gb|EDT89808.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|219621554|gb|ACL29711.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|240249332|gb|ACS46272.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250900|gb|ACS47839.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178682|gb|ADC85928.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis BB-12] gi|295793929|gb|ADG33464.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis V9] Length = 290 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 90/265 (33%), Gaps = 20/265 (7%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y + ++R ++ AL + I L+ D A + Sbjct: 17 YTNLTELQLRNRLEPSKGIFIAESPKVITRALAAGRQPISLLVEEPWIEGMADIFAFIDE 76 Query: 90 ----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV P+ + +I G LA L + N+ + VL+++ D Sbjct: 77 HWGDDIPVYVASPEQLRRITGYRLHRGALAAMHRWELPTVAEVCANATRIAVLENIVDHT 136 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI+RSA A D ++ T S + + G + +P+ RI Sbjct: 137 NVGAIMRSAAALDVDAVLVTPSCSDPLYRRAIRVSMGTVFQVPWTRIGGDDVHYWPWQGL 196 Query: 206 GFQTIGLSSD----------------SKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + DK+ALI G EG GL T A Sbjct: 197 EELHGLGFTTAAMALSDDSISLDDLVWRLHANDNTHIDKLALIFGTEGDGLSRHTIANAD 256 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + M + +LNV+ ++AVA Y Sbjct: 257 LTVKIPMSHDVDSLNVAASSAVAFY 281 >gi|110835053|ref|YP_693912.1| RNA methyltransferase [Alcanivorax borkumensis SK2] gi|110648164|emb|CAL17640.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax borkumensis SK2] Length = 251 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 60/241 (24%), Positives = 100/241 (41%), Gaps = 12/241 (4%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDW------DANLPHPFPVKTVPPQTIDKIVG 106 G H V A L + + +L R D A ++ + ++K G Sbjct: 9 GFHAVEALLRHRPEAVLELFVQDTRADRDDPRLAALMQAAKDFGIAIQRARREVLEKHAG 68 Query: 107 KEAVHQGLALETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + L LD LL+VL++V DPHN+GA LRSA A Sbjct: 69 PQNQGIVARARPRRPLDESALLQWLDGKPAKPLLLVLENVTDPHNLGACLRSADAAGVQA 128 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPL 220 +I +R + + V ++A GA E + Y I NL L + + + + L Sbjct: 129 VIVPRRNAAGLTPVACRTAVGAAESLAYYEIGNLASLLDQLRDRGVWVVGTALEERSESL 188 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A+++GAEG GL+ T++ + + M G +++LNVS A V L+ + Sbjct: 189 FTFQAPESLAVVMGAEGSGLKRLTRDKCDQLLEIPMAGEVQSLNVSVATGVMLFQVRAQR 248 Query: 281 A 281 + Sbjct: 249 S 249 >gi|291294519|ref|YP_003505917.1| RNA methyltransferase TrmH family, group 3 [Meiothermus ruber DSM 1279] gi|290469478|gb|ADD26897.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus ruber DSM 1279] Length = 238 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 115/241 (47%), Gaps = 12/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + V AL ++ Q+ + A L + + +TVP +D++V + Sbjct: 2 LIYGRNPVLEALREG--RVEQVWVARGVEAWLLKELDKL-GASYQTVPRIQLDQMV-RTT 57 Query: 110 VHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQGL E L L+ LL+VLD + DP N GAI+RSA A G+ Sbjct: 58 QHQGLVAEITELAYADLEAPFRLAKERGERVLLVVLDGITDPRNYGAIIRSAFALGAHGV 117 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 +T +R S SA++ K+++G IP +++ N+ L+++ G G S + K + + Sbjct: 118 VTEERRSAPLSALVMKASAGTASKIPLVQVKNIPRYLEQLKQQGIWVYGTSGKASKTIAE 177 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNHFA 281 +AL++G+EG+G+R E +A + + ++LN + A V LY N Sbjct: 178 LDYQRPLALVIGSEGEGMRRLVAEHCDELARIPLSEGAESLNAAVALGVVLYQAGINRRP 237 Query: 282 K 282 K Sbjct: 238 K 238 >gi|227529489|ref|ZP_03959538.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227350574|gb|EEJ40865.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 248 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 11/246 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 N F+ G H AL + K+F K+ + VP + Sbjct: 2 KTESNDFIIGRHPAVMALKSDQEINKVFIQSGLKSDAISQIIKLAKEKRLVISNVPKTKL 61 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSA 154 D++ + HQG+AL A T+D ++LD + DPHN+G+I+R+A Sbjct: 62 DQMSDHQ-NHQGVALAVAAYHYATIDDLFENAAKHDEDPFFLILDELEDPHNLGSIIRTA 120 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A GII +R + ++V+AK+++GA+EH+P R++NL + + + Sbjct: 121 DAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNL-VQTAQELKDRGVWLFGTD 179 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL++G EGKG+ ++ M + M G +++LN S AA++ +Y Sbjct: 180 MKGTDYRRWNAKGAVALVIGNEGKGISSLLKKNCDEMLTIPMIGHVQSLNASVAASLLIY 239 Query: 275 ITQNHF 280 N Sbjct: 240 QGFNSR 245 >gi|205374405|ref|ZP_03227202.1| rRNA methylase [Bacillus coahuilensis m4-4] Length = 247 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 96/241 (39%), Gaps = 10/241 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + + + G H + AL + +LL ++ WD N P+ + Sbjct: 6 NKKERIKTNTFMIEGFHLIEEALKVDG-VVEELLVVEDITLPKSWDVN----VPMTLLKR 60 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 ++ E A+ + L+ ++LD V DP NIG ++R+A A Sbjct: 61 GIEKELTDTEQPQGVFAICRQLNQNVELEGTAY----LLLDGVQDPGNIGTMIRTADAAG 116 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 DG+I + + + +SA G+ H+P + + + + + + + Sbjct: 117 FDGVIMGEGTVDPYNPKVLRSAQGSHFHLPIVNKNLVEVVQELHDNGFDVFGTS-LQNGE 175 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + K ALI+G EG G++ T ++ + G ++LNV+ AA V +Y Q Sbjct: 176 DYREVLFPAKFALIMGNEGNGMQETLLHATTKNLYIPIFGKSESLNVAVAAGVLMYWGQQ 235 Query: 279 H 279 Sbjct: 236 Q 236 >gi|149186804|ref|ZP_01865114.1| rRNA methylase [Erythrobacter sp. SD-21] gi|148829471|gb|EDL47912.1| rRNA methylase [Erythrobacter sp. SD-21] Length = 263 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 93/232 (40%), Positives = 142/232 (61%), Gaps = 5/232 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + + ++ L+G H V AAL NP R+ +L AT+ +A LD + LP FPV+ Sbjct: 21 RGSGRASAGHVRLWGRHAVEAALKNPDRQHRKLWATREGVASLDGE--LPPDFPVEYADV 78 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAV 155 Q + ++V K+A HQGL LE A L LD V ++ ++VLD V DPHN+GAI+RSAV Sbjct: 79 QDLARLVAKDAPHQGLVLECAALEDRFLDEVLDGDPARPIIVLDQVTDPHNVGAIMRSAV 138 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF+ ++T R++P E V+ KSASGALE +P+IR+ NL A+++M G+ IGL+ Sbjct: 139 AFNAAALVTQDRHAPPEGGVIGKSASGALETLPWIRVVNLARAMEEMAEAGYWRIGLTGH 198 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + +A++LGAEG+G+R + ++A L + I++LNVSN Sbjct: 199 TDTTFAEALPAGPVAIVLGAEGEGMRQNIETHCDALAKLPISNEIESLNVSN 250 >gi|99081889|ref|YP_614043.1| RNA methyltransferase TrmH, group 3 [Ruegeria sp. TM1040] gi|99038169|gb|ABF64781.1| RNA methyltransferase TrmH group 3 [Ruegeria sp. TM1040] Length = 262 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 91/239 (38%), Positives = 135/239 (56%), Gaps = 7/239 (2%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 E ++L+G+H V AL NP R+ +L+ T NA +L DA + V P+ + Sbjct: 24 SETVWLFGLHAVRDALLNPKREKLRLVVTLNAQNKL-EDAIATSGITPEVVDPRKFSVPI 82 Query: 106 GKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +VHQG ALE PL L+ +++LD V DPHN+GAILRSA + Sbjct: 83 DPGSVHQGAALEVKPLNWGGLEDNCIGAEVPRVILLDRVTDPHNVGAILRSAEVLGASAV 142 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I T+ +S E+ LAK+ASGALE PY+R+ NL+D + + G+ +GL ++++ +E+ Sbjct: 143 IGTRHHSAPETGALAKTASGALERQPYLRMRNLSDTIVALQQMGYLVLGLDGEAEETIEE 202 Query: 223 E---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + IAL+LGAEG GLR KT+ET + + +LNVSNAAA++LY + Sbjct: 203 AVAGRTKEPIALVLGAEGPGLRQKTKETVDKLVKIDAARGFGSLNVSNAAALSLYASLK 261 >gi|294634465|ref|ZP_06713000.1| RNA methyltransferase, TrmH family, group 3 [Edwardsiella tarda ATCC 23685] gi|291091979|gb|EFE24540.1| RNA methyltransferase, TrmH family, group 3 [Edwardsiella tarda ATCC 23685] Length = 228 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 95/221 (42%), Gaps = 6/221 (2%) Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 ++F + ++ V+ Q +D+ V +A Sbjct: 5 EVFVMKGREDRRLLPLLQQLEEGGIRVQVAQRQWLDEKVEGAVHQGIVARVKPGRQYQEN 64 Query: 127 DAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D + L++LD V DPHN+GA LRSA A D +I + S +A K A Sbjct: 65 DLPDLLASLDHPPFLLILDGVTDPHNLGACLRSADAAGIDAVIVPRDRSAQLNATAKKVA 124 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GA E +P IR++NL ++ + IG + ++ L Q +AL++GAEG G+ Sbjct: 125 CGAAESVPLIRVTNLARTMRLLQEENIWIIGTAGEADHSLYQSKMAGAMALVMGAEGDGM 184 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 R T+E + + M G + +LNVS A + L+ + Sbjct: 185 RRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS 225 >gi|292572291|gb|ADE30206.1| tRNA/rRNA methyltransferase [Rickettsia prowazekii Rp22] Length = 242 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 126/237 (53%), Gaps = 5/237 (2%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + ++YG H V +A+NNP R+I +L TK D + L + V + K++ Sbjct: 9 KNSYYMYGKHPVLSAINNPKRQIENILCTKEFF---DINKKLIGTRSYEIVNNYILSKLL 65 Query: 106 GKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + A +D + +++LD + D NIGAI+RSA AF + II Sbjct: 66 KHQTHQGIAAKVRPIFSYNLDDIDINKPQCKIVILDQITDTQNIGAIIRSAAAFYINAII 125 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + SP+ES +AK+A G LE IP I+++NL + + GF IG++ +K+ + Sbjct: 126 LPQDNSPNESGSIAKAACGTLELIPIIKVTNLCSYMNYLKKRGFWIIGVTGYAKEYFTDK 185 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +DKIAL+ GAE KG+R +ET +A + + +++LNV+NAA++ + +F Sbjct: 186 LISDKIALVFGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANAASIIFHSLHKYF 242 >gi|157826066|ref|YP_001493786.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford] gi|157800024|gb|ABV75278.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford] Length = 244 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 76/238 (31%), Positives = 124/238 (52%), Gaps = 5/238 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ LD + L + V Sbjct: 7 QNKKLDSKNCYYMYGKHPVFSALNNPKRQIENILCTREI---LDTNKKLIGTRSYEIVNN 63 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K++G + +A LD + +LD + D NIGAI+RSA A Sbjct: 64 DILSKLLGNQTHQGIVAKVRPIFSYNLENLDIKNQKCKIAILDQITDTQNIGAIIRSAAA 123 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F + II K SP+ES +AK+A G LE I I+++NL + + GF IGL+ + Sbjct: 124 FDINAIILPKDNSPNESGGIAKAACGTLELISIIKVTNLRSCMNYLKKHGFWIIGLTGSA 183 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ +DK+AL+ G+E KG+R +ET +A + + +++LNVSNAA++ + Sbjct: 184 HDYFSDKLISDKMALVFGSEDKGIRRLIEETCDYLAKIPISKRVESLNVSNAASIIFH 241 >gi|313680591|ref|YP_004058330.1| RNA methyltransferase, trmh family, group 3 [Oceanithermus profundus DSM 14977] gi|313153306|gb|ADR37157.1| RNA methyltransferase, TrmH family, group 3 [Oceanithermus profundus DSM 14977] Length = 237 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 111/234 (47%), Gaps = 11/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++YG + V A + ++L + + P + VP +D++V + Sbjct: 2 WIYGRNPVLEAAREGG--VRRVLVARGVERKFLKKLEDA-GIPYELVPRIELDQLV-RTT 57 Query: 110 VHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ E + D L+++LD + DP N GAILRSA A G+ Sbjct: 58 HHQGIVAEIEAIRLAEPDAPLRLAHKRGELPLVVLLDGITDPRNYGAILRSAEALGAHGV 117 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 ++ R S S V K+++GA H+P +++ NL ++++ G GL+ + + LE+ Sbjct: 118 VSETRRSAPLSPVAVKASAGAARHLPVVQVPNLPRYIEELKEAGVWVYGLAGEGEVALEE 177 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +A ++G+EG GLR ++ + H+ + G +LN + AA +A++ Sbjct: 178 ADYERPLAWVIGSEGSGLRRLVRDRCDQLVHIPLRGRTPSLNAAVAAGIAVHWA 231 >gi|227894574|ref|ZP_04012379.1| tRNA-rRNA methyltransferase [Lactobacillus ultunensis DSM 16047] gi|227863733|gb|EEJ71154.1| tRNA-rRNA methyltransferase [Lactobacillus ultunensis DSM 16047] Length = 252 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101 F++G H L + KI ++ ++TVP + Sbjct: 3 SNKDFVFGRHAGLDYLKTQNADKINKVFLQHGIQEDFANQVYALAKKKRLVIQTVPKNKL 62 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSA 154 D++V + HQGL L + LD L++LD + DPHN+G+ILRSA Sbjct: 63 DRLV-EGGNHQGLVLAISSFEYADLDQLLDKFDQEEKEPFLLMLDSIEDPHNLGSILRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A DGII KR++ ++V+AK+++GA++++P R++NL +++ G+ G Sbjct: 122 DATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWVFGTDM 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E K K L++G EGKG+ P ++ L M G +++LN S A V LY Sbjct: 182 AGVDYREWNAK-GKAVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQSLNASVATGVLLY 240 Query: 275 ITQNHF 280 N Sbjct: 241 QAYNSR 246 >gi|317051903|ref|YP_004113019.1| TrmH family RNA methyltransferase [Desulfurispirillum indicum S5] gi|316946987|gb|ADU66463.1| RNA methyltransferase, TrmH family, group 3 [Desulfurispirillum indicum S5] Length = 228 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 91/227 (40%), Gaps = 6/227 (2%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 GV++V AL S I ++ +++ A H P+K + +D G+ Sbjct: 5 GVNSVREALRCGSN-IEKIFLSRSLPD--IETAAREHDIPIKILNRDKMDSQFGQHNQGV 61 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G + L + ++ +++ D V DP N+GAI+RSA AF D +IT + + Sbjct: 62 GAIVGAIATQ-DPLTFLVDASCIVLADRVQDPGNLGAIIRSAAAFGADVVITE--HQSAP 118 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + AS + + + + L + + KI L+ Sbjct: 119 ISDTVIKASAGNIYHTRVGRVVNAARYVEKAKENGFWTVALDGEGESLFRLKLDGKILLM 178 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +G EG GL+ A A + M +++LN S A A+ALY Sbjct: 179 VGNEGSGLKDILLRHADWRASIPMRPGVESLNASAATAIALYEIARQ 225 >gi|83594035|ref|YP_427787.1| RNA methyltransferase TrmH, group 3 [Rhodospirillum rubrum ATCC 11170] gi|83576949|gb|ABC23500.1| RNA methyltransferase TrmH, group 3 [Rhodospirillum rubrum ATCC 11170] Length = 348 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 93/244 (38%), Positives = 130/244 (53%), Gaps = 10/244 (4%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP-VKT 95 K L+L+G H V AAL NP RK LA LP P V+ Sbjct: 104 RGKRPGGRGDGGLWLFGRHAVEAALQNPERK------ALRLLALAGAAEGLPKGGPTVEP 157 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILR 152 + I+ +V AVHQGLAL+ APL PT++ + ++ +LD V+DPHNIGA+LR Sbjct: 158 ADREAIEAVVPPGAVHQGLALKVAPLSQPTVEEIARIPGPSVVAILDQVSDPHNIGAVLR 217 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA AF ++ R+SP E+ LAKSASG LE +P +R NL+ AL GF GL Sbjct: 218 SAAAFGIRAVVVQDRHSPEETGTLAKSASGTLERVPLVRAINLSQALDTFKEHGFWCAGL 277 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + ++ L + ++ ++LG+EG GLR ++ + L M +++LNVSNAAAV Sbjct: 278 DASAETTLAEAALPERCVVVLGSEGAGLRRLVRDHCDLLVKLAMDSGVESLNVSNAAAVT 337 Query: 273 LYIT 276 Y Sbjct: 338 FYEL 341 >gi|332292458|ref|YP_004431067.1| RNA methyltransferase, TrmH family, group 3 [Krokinobacter diaphorus 4H-3-7-5] gi|332170544|gb|AEE19799.1| RNA methyltransferase, TrmH family, group 3 [Krokinobacter diaphorus 4H-3-7-5] Length = 244 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 100/241 (41%), Gaps = 13/241 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGK 107 ++G + A+ I ++ K L + N VP + ++K+ + Sbjct: 7 IFGTRAIIEAIQAGKE-IDKVFLQKGLHNPLLSELNTLIKKKGVQTSHVPIEKLNKLTQQ 65 Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG + + + + L ++LD ++D N GAI+R+A Sbjct: 66 --NHQGAIAVVSAISFYDFEELVNAVVETEAAPLFILLDQLSDVRNFGAIIRTAECTGVH 123 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K+ + V K+++GA +IP ++ ++ DA+ + G Q + + ++ L Sbjct: 124 GIIIPKKGGAPVNGVAIKTSAGAAFNIPIAKVDHIKDAIYYLQGSGVQVVAATEKTETTL 183 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A+++G E G+ P + A L + G I +LNVS A LY Sbjct: 184 FETDFTSPTAIVMGREDSGVSPGVLKIVDKQAKLPLKGSIASLNVSVACGAFLYEIVRQR 243 Query: 281 A 281 + Sbjct: 244 S 244 >gi|313890877|ref|ZP_07824501.1| RNA methyltransferase, TrmH family [Streptococcus pseudoporcinus SPIN 20026] gi|313120775|gb|EFR43890.1| RNA methyltransferase, TrmH family [Streptococcus pseudoporcinus SPIN 20026] Length = 255 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 93/230 (40%), Gaps = 10/230 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + ++ + G H A + ++ + R+ V V P+ + ++ Sbjct: 33 RTDSYLIEGWHLFEEA-KKAQASFLHIFVVEDCVDRV------ATDDKVIVVTPEVLKEL 85 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+ E + LL+ + V DP N+G ++R+A A DG++ Sbjct: 86 TDSP-TPQGIVAEVKQEKPDLPSIGKGKYLLL--EDVQDPGNLGTMIRTADAAGFDGVLL 142 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 +++ + + +S G+ HIP R SD +Q Sbjct: 143 SEKSADVFNQKTLRSMQGSHYHIPVWRTDVYAFCRTMKTKEMPILATTLSDQSIDYKQVG 202 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L++G EG+G+ PK E ++ + H+ MPG ++LNV+ AA + ++ Sbjct: 203 TLTDFILVMGNEGQGISPKMAELSSQLVHISMPGQAESLNVAVAAGILIF 252 >gi|302870247|ref|YP_003838884.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora aurantiaca ATCC 27029] gi|302573106|gb|ADL49308.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora aurantiaca ATCC 27029] Length = 371 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 11/253 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKT 95 + + ++ L G + V +L P+ ++ + + + Sbjct: 117 RKANPAKDSPELLVGRNPVLESLRTQVPATALYTAQGIDVDDRVKEIVRTAADRGIAILE 176 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGA 149 V +D++ G +HQG+ L+ P D + + LL+ LD V DP N+GA Sbjct: 177 VSRAELDRMTG-GVLHQGVGLQVPPFAYEPFDDLVAAALEQAAPLLVALDGVTDPRNLGA 235 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ++RSA AF G+ +R + +A ++++GA +P +++NLT +L+ GF Sbjct: 236 VIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACKEAGFVV 295 Query: 210 IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL +D + L + +++G+EG+GL ET + M +++LN S A Sbjct: 296 VGLDADGQTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIPMVSDVESLNASVA 355 Query: 269 AAVALYITQNHFA 281 AAV L + Sbjct: 356 AAVTLAEVARRRS 368 >gi|262370090|ref|ZP_06063417.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter johnsonii SH046] gi|262315129|gb|EEY96169.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter johnsonii SH046] Length = 249 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 109/249 (43%), Gaps = 15/249 (6%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTI 101 +PE YGVH+V + L ++ L + + + P V+ + Sbjct: 3 KPEYF--YGVHSVESLLELEPERVLTLFTLKGRDDQRLKRVLELAEPFGISVQQTGRDRL 60 Query: 102 DKIVGKEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 +K+ G HQG+ P L + LL+ LD V DPHN+GA +R+A Sbjct: 61 EKMAGLP-FHQGVVAAVRPNPVFNEKDLEALLKQSPNCLLLGLDQVTDPHNLGACIRTAA 119 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A + +I + S S + K A+G E + +I+++NL L ++ + + Sbjct: 120 AMGVEAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAQIKDEFNVRVVGTML 179 Query: 216 SKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 +K L + + + +++GAE GLRP TQ ++ M G +++LNVS A +A Sbjct: 180 DEKALPLQQFDFTGTAVCVVMGAEDTGLRPITQSQCDQTVYIPMAGNLQSLNVSVATGMA 239 Query: 273 LYITQNHFA 281 LY Sbjct: 240 LYEACRQRN 248 >gi|260663232|ref|ZP_05864124.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus fermentum 28-3-CHN] gi|260552424|gb|EEX25475.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus fermentum 28-3-CHN] Length = 251 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 15/250 (6%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPP 98 T++ + F+ G H AAL + ++I ++ K + VP Sbjct: 2 KTNEENSEFIIGRHPAMAALKSD-QEINKVFIQKGLKTDAIAQLVKSAKERHLVISNVPK 60 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAIL 151 +D++ + HQG+AL A T+D ++LD + DPHN+G+IL Sbjct: 61 TKLDQMTAGQ-NHQGVALAVAAYQYATVDDLFENAAQKDEEPFFLILDELADPHNLGSIL 119 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A GII KR S ++V+AK+++GA+EH+P R++NL +++ G G Sbjct: 120 RTADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARVTNLVQVAKELQKRGVWLFG 179 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + K +AL++G EGKG+ P ++T M + M G +++LN S AA++ Sbjct: 180 TDMQGTDYRRWDAK-GAVALVIGNEGKGISPLLKKTCDEMLTIPMIGHVQSLNASVAASL 238 Query: 272 ALYI--TQNH 279 +Y H Sbjct: 239 LIYQGFATRH 248 >gi|57239339|ref|YP_180475.1| putative RNA methyltransferase [Ehrlichia ruminantium str. Welgevonden] gi|57161418|emb|CAH58342.1| putative tRNA/rRNA methyltransferase [Ehrlichia ruminantium str. Welgevonden] Length = 249 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 131/239 (54%), Gaps = 10/239 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQT 100 + +++YG H AAL N +RK +LL T+N + + + K V T Sbjct: 3 KKKIWIYGKHPCVAALQNINRKCHELLVTENFIKHNNGIQKIRELSKQKNIYPKQVNLNT 62 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAV 155 I+ ++ + HQG+AL+ + + + +++ +++LD V D +N+G+I+RSAV Sbjct: 63 INSVLPPNSNHQGIALQVSIVDTVSIEDVLSNIPTEISTIILLDQVTDVYNVGSIIRSAV 122 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F+ +I SPSE+ ++K++SGA++ IP + + N+++A+ + G+ G + Sbjct: 123 CFNVHAVILPYYNSPSENCGMSKTSSGAIDMIPIVYVVNISNAIHTLKKAGYWCYGFDAK 182 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +PL + ++K +I G+E KGLR T+E + + I +LNVSNAAA+ALY Sbjct: 183 QGEPLHKIKLDNKRLVIFGSENKGLRTLTKENCDFLLKIATSERIDSLNVSNAAAIALY 241 >gi|241895139|ref|ZP_04782435.1| TrmH family tRNA/rRNA methyltransferase [Weissella paramesenteroides ATCC 33313] gi|241871635|gb|EER75386.1| TrmH family tRNA/rRNA methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 268 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 15/267 (5%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--- 80 +RN++ K+ Q+ + + F+YG H AL +I ++ + Sbjct: 3 QRNNK--KQAGGKRQQHEPQGENQAEFVYGHHAAVEALK-GQTEINKVWLQTGLADKARN 59 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQ 133 ++ P +D++ E HQG+ L A T+D + Sbjct: 60 ELASLAKKRGLVMQDAPKAKLDELTNGE-NHQGVVLSIAAYAYVTIDDLFAKAAEKDEAP 118 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +VLD + DPHN+G+I+R+A A GII KR + ++V+AK+++GA+EH+P R++ Sbjct: 119 FFLVLDSIEDPHNLGSIMRTADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVARVT 178 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL ++++ G G + + ALI+G EGKG+ P +++ Sbjct: 179 NLVQTVEQLKERGVWVFGTDMNGNDYRRWD-ATGATALIIGNEGKGISPLLKKSVDETLT 237 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 + M G +++LN S AA++ +Y N Sbjct: 238 IPMIGHVQSLNASVAASLLIYQGYNSR 264 >gi|218281262|ref|ZP_03487766.1| hypothetical protein EUBIFOR_00330 [Eubacterium biforme DSM 3989] gi|218217546|gb|EEC91084.1| hypothetical protein EUBIFOR_00330 [Eubacterium biforme DSM 3989] Length = 244 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 111/249 (44%), Gaps = 17/249 (6%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N++ K+ QK + + + G H V A + + +L + + ++ Sbjct: 6 NNKKIKEYAKLIQK-KERDKTNLFLVEGEHMVKEA--YNANALQELFILEGIECPIQFN- 61 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 +TV Q ++K+ + + + + + L P + +++LD+V DP Sbjct: 62 -------YETVTQQVLNKLSNQNSNSKMIGVCKKLNLKPVKEEN-----ILLLDNVQDPG 109 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ILR+A +F D I +K + + +S+ GAL +IP I+ + + + Sbjct: 110 NVGTILRTAHSFGIDCIYMSKGCADIYNPKTIQSSQGALFYIPVIQTDLVEEIKKLQERN 169 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 D K L+ + K A+++G EG+G+R + + + + + M ++LNV Sbjct: 170 IEVYATALHDKHKDLQDIKPSKKYAILVGNEGQGVRKELIDLSNHIVKIEM-ETFESLNV 228 Query: 266 SNAAAVALY 274 + A ++ +Y Sbjct: 229 AIATSICMY 237 >gi|157364334|ref|YP_001471101.1| RNA methyltransferase [Thermotoga lettingae TMO] gi|157314938|gb|ABV34037.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga lettingae TMO] Length = 233 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 104/231 (45%), Gaps = 7/231 (3%) Query: 50 FLYGVHTVSAA--LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG + + P +KI+ L + N + + + + + ++K+ G+ Sbjct: 2 IVYGKSVLDEIVRIRYPVKKIY-LRESNNEKFQEIEEILKKNGYHYIKTSAKHLEKLCGE 60 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 E + + + + +++LDH+ DPHN+GAI+R+ V I+ TK Sbjct: 61 EKNQGIV---IDLDFNYADETYLDGDFIVLLDHIVDPHNLGAIIRTCVGAGVSAIVITKD 117 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 S + + K ++G + IP + ++N+ ++K+ + + + K L +E Sbjct: 118 RSAKITPAVVKVSAGTVFRIPVVIVTNIVYTIEKL-KNKGYWVYGADMNGKNLYEEGFIS 176 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +A++ G EG+GL +E + + M I +LNVS +A + L+ Sbjct: 177 PVAIVFGNEGEGLSRLVKERCDQLISIPMRSKIDSLNVSVSAGIILFEISR 227 >gi|302206081|gb|ADL10423.1| Putative rRNA methyltransferase [Corynebacterium pseudotuberculosis C231] Length = 289 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 95/244 (38%), Gaps = 6/244 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 ++ + + G ++V AA++ + + T+ A + + P Sbjct: 39 RTAGRKKADRFLAEGENSVEAAVSTGAATD--VFVTETAAQKFVDVITAAKHMGIYVHPI 96 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + V+ + + + +L+ V ++P N G ++R A A Sbjct: 97 TDRAAKSLSDTVNTTGIFAVCRPVLWDIKSALKGQPRLVCVPVETSEPGNAGTLIRVADA 156 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II + +S++G+L HIP +R NL + + G + + ++ Sbjct: 157 MGADCIIFAGNTVDPQGPKAVRSSAGSLFHIPVVREPNLQRVWDSLKARGLKILATTAQG 216 Query: 217 KKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L+ + + A ++G E GL E A + + G ++LN++ AA+V LY Sbjct: 217 EISLDNAGDVLSHPTAWLMGNEAHGLEESLMEKADHRVCIPIRGRAESLNLATAASVCLY 276 Query: 275 ITQN 278 + Sbjct: 277 ESSK 280 >gi|300858366|ref|YP_003783349.1| hypothetical protein cpfrc_00948 [Corynebacterium pseudotuberculosis FRC41] gi|300685820|gb|ADK28742.1| hypothetical protein cpfrc_00948 [Corynebacterium pseudotuberculosis FRC41] gi|302330634|gb|ADL20828.1| putative rRNA methyltransferase [Corynebacterium pseudotuberculosis 1002] gi|308276319|gb|ADO26218.1| putative rRNA methyltransferase [Corynebacterium pseudotuberculosis I19] Length = 285 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 95/244 (38%), Gaps = 6/244 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 ++ + + G ++V AA++ + + T+ A + + P Sbjct: 35 RTAGRKKADRFLAEGENSVEAAVSTGAATD--VFVTETAAQKFVDVITAAKHMGIYVHPI 92 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + V+ + + + +L+ V ++P N G ++R A A Sbjct: 93 TDRAAKSLSDTVNTTGIFAVCRPVLWDIKSALKGQPRLVCVPVETSEPGNAGTLIRVADA 152 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D II + +S++G+L HIP +R NL + + G + + ++ Sbjct: 153 MGADCIIFAGNTVDPQGPKAVRSSAGSLFHIPVVREPNLQRVWDSLKARGLKILATTAQG 212 Query: 217 KKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L+ + + A ++G E GL E A + + G ++LN++ AA+V LY Sbjct: 213 EISLDNAGDVLSHPTAWLMGNEAHGLEESLMEKADHRVCIPIRGRAESLNLATAASVCLY 272 Query: 275 ITQN 278 + Sbjct: 273 ESSK 276 >gi|289522994|ref|ZP_06439848.1| RNA methyltransferase, TrmH family, group 3 [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503537|gb|EFD24701.1| RNA methyltransferase, TrmH family, group 3 [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 258 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 115/241 (47%), Gaps = 12/241 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104 YG H V A L + ++L ++ +L D + PV V +T+D++ Sbjct: 7 EDICYGRHPVIALLEESPHRCHKILISEGINKKLVDDIYDRARKNGIPVLKVDNKTLDRV 66 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 G + HQG+ + ++ +++ L++V D + DP+N+GAI+RSA F Sbjct: 67 SGGAS-HQGVLAYISQGNLGDINQLIDRITEKKDNSLVVVADKIKDPNNLGAIIRSAEVF 125 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G+I KR S S+ + KS++GA + + +SNL A++++ G +GL + Sbjct: 126 GALGVIFPKRNSAYPSSAVHKSSAGASMRVMMVSVSNLVSAIKRLQENGMWVVGLDQRAD 185 Query: 218 KPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + L E K+ L++G+E G+ P + + M G +LN + AA++ +Y Sbjct: 186 RYLWDEPSIRGKLTLVVGSEEAGISPIVARACDDIRSIPMFGKTGSLNAAVAASIGMYEW 245 Query: 277 Q 277 Sbjct: 246 M 246 >gi|254416700|ref|ZP_05030450.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus chthonoplastes PCC 7420] gi|196176440|gb|EDX71454.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus chthonoplastes PCC 7420] Length = 269 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 58/258 (22%), Positives = 107/258 (41%), Gaps = 18/258 (6%) Query: 38 QKSRHTSQPENLF-LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPV 93 +++H + +YG V AL+NP I +LL NA + V Sbjct: 4 NQTKHPR--DKFITVYGRKPVLEALSNPDIIIDKLLIANNARGEFIDEIIKQARQRGVKV 61 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------------RNSQLLMVLDHV 141 P+ I +I QG+ ++ P L + + LD V Sbjct: 62 SRESPKYITRISRNGRHDQGVVVDVIPPAMEALSTYLERQQSHPPNQKPQTHKFLALDGV 121 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 +P N+G I+R+ +A DGII ++ P + ++ K+++G + +R + L+DALQ+ Sbjct: 122 KNPSNVGMIIRTCLAAGFDGIILPRKGCPDLNPLVIKASAGTAFYTRVLRCAELSDALQQ 181 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + GLS + L + +LG E +G+ + + + + Sbjct: 182 LRQANYTIYGLSGTATSTLYNLSFSPFSVFVLGNETEGINRDHHNLIDTWVSIPIEFPAE 241 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV++AAAV + + Sbjct: 242 SLNVASAAAVVCFELKRQ 259 >gi|319938132|ref|ZP_08012530.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1] gi|319806653|gb|EFW03302.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1] Length = 240 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 54/253 (21%), Positives = 107/253 (42%), Gaps = 18/253 (7%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K++ QK ++ + + + G H + A RK +L L+ + Sbjct: 6 QNETIKEIVKLKQK-KYRDEKKMFLIEGFHLIEEA-----RKKHSILQIITTLSDDFEEE 59 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 L V ++K+ + +A+ S ++ + LL D V DP Sbjct: 60 TL-------HVSQNVMNKLAFTRSPQPIMAICRQNNHSLIVEDGQRYLLL---DRVQDPG 109 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ++R+A+AF D +I ++ + + ++ GAL + + NL DA+ + Sbjct: 110 NVGTMMRTALAFGYDQMIMSEDCVDLYNDKVIRATQGALF-QMNVCVMNLKDAIVFLKHQ 168 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G G +E DK+A ++G EG+G+ + E ++ + +++LNV Sbjct: 169 GVDVYGTCLRDASSIETYQVKDKMAFVMGNEGQGVCDEILELCQHRLYIPIQ-TVESLNV 227 Query: 266 SNAAAVALYITQN 278 A+A+ +Y Q Sbjct: 228 GIASAITMYHFQK 240 >gi|297182196|gb|ADI18367.1| rRNA methylases [uncultured actinobacterium HF4000_04C13] Length = 260 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 49/252 (19%), Positives = 99/252 (39%), Gaps = 3/252 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + ++M+ + + + G V+AAL+ R++ Q++ +A Sbjct: 8 RNPRIQRMRRLLRDRGYRYDEAAYVVEGPALVAAALDAG-RQVRQVVVPASASDHHVMHR 66 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 VP + + + E A +D + L+VL V+DP Sbjct: 67 AGWSGAATLVVPDGVFEGLSSTRSPQP-ALAEVAFHDVEPMDLATTTGPLLVLAEVSDPG 125 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G ++RSA AF G++ + L ++A+G+ +P+ + + AL+ + Sbjct: 126 NAGTLMRSAEAFGATGVVV-AGGVDPYNPKLVRAAAGSSFRVPFAVVDDPMAALRILEEA 184 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G+ + + +A+ILG E GL + + G +++LNV Sbjct: 185 GYGCWATVPRGGLSPAEVPSDGPVAIILGNEPHGLSDEVVAACVGTVSVPTVGGVESLNV 244 Query: 266 SNAAAVALYITQ 277 + A ++AL+ Sbjct: 245 AIAGSIALHDLA 256 >gi|15604508|ref|NP_221026.1| hypothetical protein RP664 [Rickettsia prowazekii str. Madrid E] gi|3861202|emb|CAA15102.1| unknown [Rickettsia prowazekii] Length = 248 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 126/237 (53%), Gaps = 5/237 (2%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + ++YG H V +A+NNP R+I +L TK D + L + V + K++ Sbjct: 15 KNSYYMYGKHPVLSAINNPKRQIENILCTKEFF---DINKKLIGTRSYEIVNNYILSKLL 71 Query: 106 GKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + A +D + +++LD + D NIGAI+RSA AF + II Sbjct: 72 KHQTHQGIAAKVRPIFSYNLDDIDINKPQCKIVILDQITDTQNIGAIIRSAAAFYINAII 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + SP+ES +AK+A G LE IP I+++NL + + GF IG++ +K+ + Sbjct: 132 LPQDNSPNESGSIAKAACGTLELIPIIKVTNLCSYMNYLKKRGFWIIGVTGYAKEYFTDK 191 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +DKIAL+ GAE KG+R +ET +A + + +++LNV+NAA++ + +F Sbjct: 192 LISDKIALVFGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANAASIIFHSLHKYF 248 >gi|116618911|ref|YP_819282.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097758|gb|ABJ62909.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 249 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 62/245 (25%), Positives = 114/245 (46%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 F+YG H +L + K++ ++ + ++ P +D+ Sbjct: 5 ESTEFVYGHHASVESLKSTQEINKVWLQTGLQDKIRNEITQLAKKKKLVIQQAPKSKLDE 64 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ L A ++D + ++LD + DPHN+G+ILR+A A Sbjct: 65 LTD-GGNHQGVVLSVAAFEYASIDDLFEQADKKGEAPFFVILDGIEDPHNLGSILRTADA 123 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII KR + +A +AK+++GA+EH+P R++NL + ++++ G Sbjct: 124 AGVHGIIIPKRRAVQLTATVAKTSTGAIEHVPVARVTNLVNIVEELKKRNVWVFGTDMAG 183 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + N +ALI+G EG+G+ P ++ M + M G +++LN S AA++ +Y Sbjct: 184 DDYRRWD-ANGAVALIIGNEGRGISPLLKKKVDGMVTIPMVGHVQSLNASVAASLLIYQG 242 Query: 277 QNHFA 281 N Sbjct: 243 YNSRN 247 >gi|160902072|ref|YP_001567653.1| RNA methyltransferase [Petrotoga mobilis SJ95] gi|160359716|gb|ABX31330.1| RNA methyltransferase, TrmH family, group 3 [Petrotoga mobilis SJ95] Length = 240 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 85/237 (35%), Gaps = 6/237 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++YG + + + + T+ + + + P + ++K+ Sbjct: 2 YIYGKNILKEIIEARYPVKHIFFSSSKTERGSLKEIVEDVANLGYSYSFSPNEVLEKMAL 61 Query: 107 KEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + LD + + L++LD + DPHN GAI+R++VA D II Sbjct: 62 TNKHQGIVIDIGNDFKYENLDIIEGKEKLFLVILDQIQDPHNFGAIVRTSVAAGVDAIII 121 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 K + E + S I + + + KP + Sbjct: 122 PKDNAV-EVTPVVIKVSSGQIFKIPIIKVTNLSNTIETLKKENVWVYGADVEGKPYYEID 180 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 KI L+ G EG G+R + + + M +++LNVS ++ + L+ + Sbjct: 181 WQGKICLVFGNEGNGIRKNVKNHCDELVSIPMFNNVESLNVSVSSGIILFEAKKQRI 237 >gi|320162456|ref|YP_004175681.1| RNA methyltransferase [Anaerolinea thermophila UNI-1] gi|319996310|dbj|BAJ65081.1| RNA methyltransferase [Anaerolinea thermophila UNI-1] Length = 250 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 102/250 (40%), Gaps = 18/250 (7%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDK 103 ++ G + V L R+ F+LL + PV VP +D Sbjct: 2 KEWICGRNAVYETLRARRRQFFRLLIASGVEEKGRIEEILALCAARRVPVSRVPRPQLDS 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ALE + L L + LD + +P N+G +LRSA A Sbjct: 62 LSE---SHQGVALECSGYPYAGLHDILALARQRGEPLLALGLDLIQNPQNLGTLLRSAEA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SD 215 G++ + + + +++SGA EH+ + + +GL S Sbjct: 119 VGAHGVVIPLARAAGITPAVVQASSGASEHLLVAQANLAQALETFKEEADAWVVGLEGSP 178 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY- 274 +P ++ + + L++G EG+G+RP + + L M G I++LN + A ++ LY Sbjct: 179 ESEPYDRVRLDGALVLVVGNEGEGMRPLVRRHCDVLVSLPMRGKIESLNAAVAGSIMLYK 238 Query: 275 --ITQNHFAK 282 ++ + Sbjct: 239 ALEARSRREE 248 >gi|332876719|ref|ZP_08444477.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685278|gb|EGJ58117.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 260 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 87/257 (33%), Gaps = 12/257 (4%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL--ARLDWDAN 86 K ++S QK + + + G V L P+ L A K L R + Sbjct: 6 KIKLIRSLEQK-KFRKECQLFVAEGHKLVDDLL--PAFDCAFLAARKEWLDTRREAVETL 62 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 ++ V + + K ++ L + + + QL + LD V DP N Sbjct: 63 ARKGCEIQEVSAEELQKASLQKNPQDVLVVFRQRPAGGAPEHLLKEQLCLGLDGVQDPGN 122 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G I+R A F + I + + + ++ GA+ + +S + Sbjct: 123 LGTIIRIADWFGIEHIFCSPDTADLYNPKTVQATMGAMARVCVHYLSLT---DLLRTANA 179 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKA 262 + + + + +++G EGKG+ ++ ++ Sbjct: 180 DIPVYGTFLDGNDMYGTELSPNGLIVMGNEGKGISRDVASLINRKLYIPNYPPERNTSES 239 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ A A+ + Sbjct: 240 LNVAVATAIVCAEFRRR 256 >gi|307719542|ref|YP_003875074.1| rRNA methylase [Spirochaeta thermophila DSM 6192] gi|306533267|gb|ADN02801.1| rRNA methylase [Spirochaeta thermophila DSM 6192] Length = 241 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 5/237 (2%) Query: 47 ENLFLYGVHTVSAALNNP--SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 ++++ G V L +P ++ L T R + Q + + Sbjct: 2 RSVYITGKRAVETYLVDPGVRERVVCLYVTDPHHHRHFLSLAREAGIRSEVCSAQELSRY 61 Query: 105 VGKEAVHQGLALETAPLLSPT--LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VG L T + + + LL+ LDH+ DPHN+GAILRSA F G+ Sbjct: 62 VGSHRGFALEVLRTFKEATLDDLCERAEENALLVALDHLQDPHNVGAILRSADQFGALGV 121 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I +R + ++A ++KS+SGA + + + + +P+ + Sbjct: 122 ILPERRAVKDAATISKSSSGADA-FVPVVVETNLRRALLHVKEAGFWVYGADMEGQPVHE 180 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + ++ L+LGAEGKGL +E + + G + + NVS AA + +Y + Sbjct: 181 VDLSGRVCLVLGAEGKGLSRLLREEVDLLVAIPARGHVDSFNVSVAAGILMYEVRRQ 237 >gi|210632460|ref|ZP_03297388.1| hypothetical protein COLSTE_01285 [Collinsella stercoris DSM 13279] gi|210159555|gb|EEA90526.1| hypothetical protein COLSTE_01285 [Collinsella stercoris DSM 13279] Length = 342 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 64/268 (23%), Positives = 106/268 (39%), Gaps = 14/268 (5%) Query: 24 RRNHRDYKKMQSFNQKSRH--TSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNAL 78 R+H Y + + R + N + G AL L+ + Sbjct: 67 SRSHAAYARDAQASASPRRDVHAAEGNY-IEGRRAAFEALRTGFPIKRALIAQGVENDPA 125 Query: 79 ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RN 131 R VK+V +D I A HQG+ LE L + Sbjct: 126 VRDLLAGLGEAGVSVKSVARAQLDAISSHGA-HQGIVLEVGKFPYADLADIIAAAGPADR 184 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L++VLDHV D N GAI+RSA G++ + S + K+++GA+ H+P + Sbjct: 185 PALVVVLDHVTDAGNFGAIVRSAEVVGAAGVVIPNKRSAEVTVATYKTSAGAVMHVPIAQ 244 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + N+ AL+ + S GF G + ++ ++AL++G+EG G+ +T Sbjct: 245 VPNIARALEDLKSAGFWVGGATEHAEGICWDAPFEGRVALVMGSEGDGISRLVLDTCDFT 304 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 L G ++LNV+ AA + Sbjct: 305 TKLPQRGATESLNVAQAATALCFEWLRR 332 >gi|119025735|ref|YP_909580.1| tRNA/rRNA methyltransferase [Bifidobacterium adolescentis ATCC 15703] gi|154487443|ref|ZP_02028850.1| hypothetical protein BIFADO_01296 [Bifidobacterium adolescentis L2-32] gi|118765319|dbj|BAF39498.1| possible tRNA/rRNA methyltransferase [Bifidobacterium adolescentis ATCC 15703] gi|154083961|gb|EDN83006.1| hypothetical protein BIFADO_01296 [Bifidobacterium adolescentis L2-32] Length = 292 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 51/271 (18%), Positives = 89/271 (32%), Gaps = 22/271 (8%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL----LATKNALARLDWDA 85 Y + ++R + AL I L + + Sbjct: 17 YVNLTEIQLRNRLEPSKGLFIAESPKVIDRALAAGREPISLLVEESWIDGMSGMFDVIEK 76 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV P+ + ++ G LA L + R ++ + V++++ D Sbjct: 77 RWGDGIPVYVASPEQLKRLTGYRLHRGALAAMKRWSLPSVEEVCRGARRVAVMENIVDHT 136 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA++RSA A D ++ T A+ + G + +P+ RI Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQVPWTRIGGDDKHYWPFTGM 196 Query: 206 GFQTIGLSSDSKKP------------------LEQEIKNDKIALILGAEGKGLRPKTQET 247 + + DK+ALI G EG GL T Sbjct: 197 RELHDLGFTTVAMALEDDSISLAELVRRLNNAETESDHIDKLALIFGTEGDGLSHHTISR 256 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + M + +LNV+ ++AVA Y T+ Sbjct: 257 ADLTVKIPMSHGVDSLNVAASSAVAFYATRR 287 >gi|302533483|ref|ZP_07285825.1| rRNA methyltransferase [Streptomyces sp. C] gi|302442378|gb|EFL14194.1| rRNA methyltransferase [Streptomyces sp. C] Length = 287 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 95/247 (38%), Gaps = 10/247 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRK---IFQLLATKNALARLDW--DANLPHPFPVKTVPPQ 99 + G V A+ + + + +L AT A R +A + V + Sbjct: 31 KERRFIAEGPQAVREAVEHRGAQGATLIELFATVEAAERYADIVEAAMLAGARVHYASDE 90 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + + + + +L+ VL HV DP N G +LR A A Sbjct: 91 VLADVSQTVTPQGLVGVCHFLDSPFEEILKAGPRLVAVLAHVRDPGNAGTVLRCADAAGA 150 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D ++ T + +++ G+L H+P + A++ + + G + + + Sbjct: 151 DAVVLTDASVDLYNPKSVRASVGSLFHLPVAVGVPVEQAVEGLRAAGVRILAADGAGQDD 210 Query: 220 LEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L+ E A + G E GL +T+ A ++ + + G ++LN++ AAAV LY Sbjct: 211 LDAELDAGTMGGPSAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYA 270 Query: 276 TQN-HFA 281 + A Sbjct: 271 SARAQRA 277 >gi|58579305|ref|YP_197517.1| putative RNA methyltransferase [Ehrlichia ruminantium str. Welgevonden] gi|58417931|emb|CAI27135.1| Hypothetical tRNA/rRNA methyltransferase [Ehrlichia ruminantium str. Welgevonden] Length = 249 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 130/239 (54%), Gaps = 10/239 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQT 100 + +++YG H AAL N +RK +LL T+N + + K V T Sbjct: 3 KKKIWIYGKHPCVAALQNINRKCHELLFTENFIKHNNGIQKIRELIKQKNIYPKQVNLNT 62 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAV 155 I+ ++ + HQG+AL+ + + + +++ +++LD V D +N+G+I+RSAV Sbjct: 63 INSVLPPNSNHQGIALQVSIVDTVSIEDVLSNIPTEISTIILLDQVTDVYNVGSIIRSAV 122 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F+ +I SPSE+ ++K++SGA++ IP + + N+++A+ + G+ G + Sbjct: 123 CFNVHAVILPYYNSPSENCGMSKTSSGAIDMIPIVYVVNISNAIHTLKKAGYWCYGFDAK 182 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +PL + ++K +I G+E KGLR T+E + + I +LNVSNAAA+ALY Sbjct: 183 QGEPLHKIKLDNKRLVIFGSENKGLRTLTKENCDFLLKIATSERIDSLNVSNAAAIALY 241 >gi|319405864|emb|CBI79496.1| tRNA/rRNA metyltransferase [Bartonella sp. AR 15-3] Length = 276 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 124/258 (48%), Positives = 169/258 (65%), Gaps = 9/258 (3%) Query: 16 KDSHYAKLRRNHRDYK----KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 +DS YA+LRR +RD K + ++ ++ Q ++LYG+H V AAL NP R + L Sbjct: 7 QDSRYARLRRQYRDIKGSFFQSSTYVKQPFIPLQKAQIYLYGIHPVHAALKNPRRILRHL 66 Query: 72 LATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 AT NAL RL+ + P + + P+ ++ VG EAVHQG+ LET PL S +L + Sbjct: 67 YATPNALKRLNIN---ESNIPCSITSCSPKKLETFVGSEAVHQGIVLETEPLKSHSLSEL 123 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 N+ L++V+D + DPHN+GAI+RSAVAF IITT R+SP ES VLAK+ASGALE I Y Sbjct: 124 TNTNLIIVMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEY 183 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I + NL+ AL+++ F + GL S+ PLE + +KI+LILGAEGKGLR KT+E Sbjct: 184 ITVHNLSKALKELQQMNFISFGLDSEGGFPLETALTGNKISLILGAEGKGLRQKTRENVY 243 Query: 250 SMAHLHMPGIIKALNVSN 267 S+ L +PG IK+LNVSN Sbjct: 244 SLVRLDLPGDIKSLNVSN 261 >gi|157804038|ref|YP_001492587.1| elongation factor Tu [Rickettsia canadensis str. McKiel] gi|157785301|gb|ABV73802.1| elongation factor Tu [Rickettsia canadensis str. McKiel] Length = 239 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 5/238 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ D + L + V Sbjct: 2 QNKKLDSKNCYYMYGKHPVFSALNNPKRQIENVLCTREIF---DANKKLIGTRSYEIVNN 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K++ + A +D + +LD + D NIGAI+RSA A Sbjct: 59 DILSKLLENQTHQGIAAKVRPIFSYNLEDIDIKNPKCKITILDQITDTQNIGAIIRSAAA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F + I+ + +P+ES +AK+A G LE IP I+++NL + + GF IGL+ + Sbjct: 119 FDINAILLPQDNAPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +KIAL+ G+E KG+R ++T +A + + +++LNVSNAA++ + Sbjct: 179 NDYFTNKFITNKIALVFGSEDKGMRKLVEKTCDYLAKIPISKRVESLNVSNAASIIFH 236 >gi|300744322|ref|ZP_07073341.1| RNA methyltransferase, TrmH family, group 3 [Rothia dentocariosa M567] gi|300380047|gb|EFJ76611.1| RNA methyltransferase, TrmH family, group 3 [Rothia dentocariosa M567] Length = 328 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 72/295 (24%), Positives = 125/295 (42%), Gaps = 20/295 (6%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ ++ K R Q + + + G + V AL Sbjct: 35 TPKAEDRVYH--KAYKMKRAAERRAATSTNRKFQTRLGGKRVSDELVTGRNAVLEALRTN 92 Query: 65 SRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 + ++ + R P+ +P +D++ AVHQG+A++ P Sbjct: 93 IPAKHLYVMSRIEVDDRVRDIMTTANKKNLPMLEIPRSELDRLTD-GAVHQGIAMQIPPY 151 Query: 122 LSPT-----LDAVRNSQ--------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 P LD + L + LD + DP N+GAI+RS AFS DG+I +R Sbjct: 152 QYPDATDLVLDVMERWHAGKLKSPPLFVALDGITDPRNLGAIIRSVSAFSGDGVIIPERR 211 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-ND 227 S + +A K+++GA IP +NLT LQ+ G IGL L ++ Sbjct: 212 SAAVTAGAWKTSAGAAARIPVAMATNLTRVLQQAKEQGIFVIGLDGGGDIDLPNLQLASE 271 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + +++G+EGKGL ET + + + +++LN + A + LY H A+ Sbjct: 272 PLCVVVGSEGKGLSRLVTETCDQIVSIPIDSAMESLNAAMAVGITLYDVSRHRAE 326 >gi|227514006|ref|ZP_03944055.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus fermentum ATCC 14931] gi|227087650|gb|EEI22962.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus fermentum ATCC 14931] Length = 251 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 15/250 (6%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPP 98 T++ + F+ G H AAL + ++I ++ K + VP Sbjct: 2 KTNEENSEFIIGRHPAMAALKSD-QEINKVFIQKGLKTDAIAQLVKSAKERHLVISNVPK 60 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAIL 151 +D++ + HQG+AL A T+D ++LD + DPHN+G+IL Sbjct: 61 TKLDQMTAGQ-NHQGVALAVAAYQYATVDDLFENAAQKDEEPFFLILDELADPHNLGSIL 119 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A GII KR S ++V+AK+++GA+EH+P R++NL +++ G G Sbjct: 120 RTADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARVTNLVQVAKELQKSGVWLFG 179 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + K +AL++G EGKG+ P ++T M + M G +++LN S AA++ Sbjct: 180 TDMQGTDYRRWDAK-GAVALVIGNEGKGISPLLKKTCDEMLTIPMIGHVQSLNASVAASL 238 Query: 272 ALYI--TQNH 279 +Y H Sbjct: 239 LIYQGFATRH 248 >gi|311112939|ref|YP_003984161.1| rRNA methyltransferase [Rothia dentocariosa ATCC 17931] gi|310944433|gb|ADP40727.1| rRNA methyltransferase [Rothia dentocariosa ATCC 17931] Length = 328 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 72/295 (24%), Positives = 125/295 (42%), Gaps = 20/295 (6%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ ++ K R Q + + + G + V AL Sbjct: 35 TPKAEDRVYH--KAYKMKRAAERRAATGTNRKFQTRLGGKRMSDELVTGRNAVLEALRTN 92 Query: 65 SRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 + ++ + R P+ +P +D++ AVHQG+A++ P Sbjct: 93 IPAKHLYVMSRIEVDDRVRDIMTTANKKNLPMLEIPRSELDRLTD-GAVHQGIAMQIPPY 151 Query: 122 LSPT-----LDAVRNSQ--------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 P LD + L + LD + DP N+GAI+RS AFS DG+I +R Sbjct: 152 QYPDATDLVLDVMERWHAGKLKSPPLFVALDGITDPRNLGAIIRSVSAFSGDGVIIPERR 211 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-ND 227 S + +A K+++GA IP +NLT LQ+ G IGL L ++ Sbjct: 212 SAAVTAGAWKTSAGAAARIPVAMATNLTRVLQQAKEQGIFVIGLDGGGDIDLPNLQLASE 271 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + +++G+EGKGL ET + + + +++LN + A + LY H A+ Sbjct: 272 PLCVVVGSEGKGLSRLVTETCDQIVSIPIDSAMESLNAAMAVGITLYDVSRHRAE 326 >gi|256826826|ref|YP_003150785.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM 15641] gi|256582969|gb|ACU94103.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM 15641] Length = 300 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 72/253 (28%), Positives = 110/253 (43%), Gaps = 23/253 (9%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIV 105 F+ G H V AL+ LA N RL D ++TVP +DK Sbjct: 3 EFIEGKHPVWEALSTHVPITRIFLADGNKHDRLLQDILHMAARQHIVMETVPRAQLDKRS 62 Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------------------RNSQLLMVLDHVNDPHN 146 K HQG+ + P +LD + L++VLDH+ D N Sbjct: 63 -KRGSHQGIMAQAQPFAYASLDDIIARGNDQAVSLAVSHSSSAAPCALIIVLDHITDAGN 121 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI RSA + GII + S +A KS++GA+ HIP +++NL AL ++ + G Sbjct: 122 LGAIARSAESVGAAGIIIPNKRSAYVTASTYKSSAGAISHIPVAQVANLQQALARLKNEG 181 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + G S ++ + + L++G E GL TQE L G++ +LNV+ Sbjct: 182 YWVAGASEKAEGGIWDANLTGNVCLVMGNENTGLARLTQEACDFFVSLPQRGVVSSLNVA 241 Query: 267 NAAAVALYITQNH 279 +A V +Y Sbjct: 242 QSATVCMYEWLRQ 254 >gi|227548138|ref|ZP_03978187.1| TrmH family rRNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] gi|227079800|gb|EEI17763.1| TrmH family rRNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] Length = 273 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 98/259 (37%), Gaps = 7/259 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + ++ + + G ++V AA+ S + AT++A Sbjct: 14 PRIVNAAKLH-RAAARKKAGRFIVEGANSVEAAVATGSATD--VFATESAAGEFAEILTT 70 Query: 88 PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V T + + + AL T L S +L+ V NDP Sbjct: 71 AGYMDVFTHAITDTAARHLSDTVSTTGIFALCTPVLWSVGKVLRGGPRLVAVCVETNDPG 130 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N G ++R A D ++ ES+ ++++G+L H+P R N++D + ++ + Sbjct: 131 NAGTLIRIADVCGADAVVFAGDTVDPESSKAVRASAGSLFHVPVARERNISDVMGQLKAA 190 Query: 206 --GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + D E+ A + G E GL + + A + + G ++L Sbjct: 191 GLSIAATTMGGDVSLDDAAEVVAQPTAWLFGNEAHGLPQELIDAADHRVSIPIRGHAESL 250 Query: 264 NVSNAAAVALYITQNHFAK 282 N++ AAA+ ++ + ++ Sbjct: 251 NLATAAAMCMWESSKVLSR 269 >gi|306832022|ref|ZP_07465177.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425948|gb|EFM29065.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 246 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + I K K R + + + G H A Sbjct: 1 MTIITSKSNNLIKKTKKLLKKKYRDH---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + ++ R+ + V V P+ + ++ QG+ E A Sbjct: 40 EKAGAEFLN-IFVLEDYADRVSHFSM------VTYVTPEVLKELTD-SKTPQGIIAEVAM 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 P D L++ + V DP N+G ++R+A A DG++ +++ + + +S Sbjct: 92 PSLPLADLKAGRYLVL--EDVQDPGNVGTMIRTADAAGLDGVLISEKSADIYNQKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R + + S + N AL++G EG G+ Sbjct: 150 QGSHFHLPIWRTDVYEACQKLQNLDVPLIATTLSKESVDYKTVEHNGDFALVMGNEGNGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + A +AH+ MPG ++LNV+ A + L+ Sbjct: 210 SELMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 245 >gi|225872630|ref|YP_002754087.1| RNA methyltransferase, TrmH family protein [Acidobacterium capsulatum ATCC 51196] gi|225791883|gb|ACO31973.1| RNA methyltransferase, TrmH family protein [Acidobacterium capsulatum ATCC 51196] Length = 283 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 105/264 (39%), Gaps = 8/264 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQLLATKNALARL 81 R++ K++++ + + L G ++ AL + +F AL R+ Sbjct: 16 SRHNSRVKELRAAFSHPGK-GERGYIALEGELLLAEALRSGLAPAAVFIRSGQWEALERV 74 Query: 82 DWDA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLLMV 137 A + +P V E+ AL P L LL+V Sbjct: 75 AAKAPSRAALDTAEILELPADIFSSAVDTESPQGIAALLAPPRFDWDDLFPAHAPALLLV 134 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 + DP N+G ++RSA AF GI+T +A + ++++G++ + + Sbjct: 135 TASLQDPGNLGTLIRSAEAFGASGILTLPGTVNLWNAKVVRASAGSVFR-MPVVARCEEE 193 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 L ++ + G ++D P Q AL++G EG GL P + A + + P Sbjct: 194 VLARLAAQGVTLFATTADGDLPATQAALTQPCALLIGNEGAGLTPHLLQAADARLAIPTP 253 Query: 258 GIIKALNVSNAAAVALYITQNHFA 281 G +++LN + A ++ LY A Sbjct: 254 GPVESLNAAIAGSILLYEASRQRA 277 >gi|310778758|ref|YP_003967091.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926] gi|309748081|gb|ADO82743.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926] Length = 251 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 41/254 (16%), Positives = 90/254 (35%), Gaps = 12/254 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + ++ YK ++ + ++ + + G + ++I + + ++ R Sbjct: 6 SKENKLYKTIKKLKTR-KYREKEKLFIAEGHKFL------DFKEIPKAIILRDGDDRYQD 58 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 P ++I +E +++LD + D Sbjct: 59 KVEEFV-CPKYIFSESLFNEISSQENSQG----IILIYPMKESSIASIGDNIVILDRIQD 113 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+R + A I+ K + +S+ G+L ++ +I + Sbjct: 114 PGNLGTIIRVSDAAGYKDIVLLKGSVDVYNEKTVRSSMGSLFNMNFIYMEEDELIKFMAE 173 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 T + I K A+I G EG+G+ + E + S + + G ++L Sbjct: 174 KNYKSTATALREDAVSYTDIIPGSKNAIIFGNEGQGVSERLIEVSDSKVIIPIYGSAESL 233 Query: 264 NVSNAAAVALYITQ 277 NV+ A + LY + Sbjct: 234 NVAVATGIVLYKFR 247 >gi|224476244|ref|YP_002633850.1| SpoU rRNA Methylase family protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222420851|emb|CAL27665.1| SpoU rRNA Methylase family protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 248 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 103/274 (37%), Gaps = 30/274 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ KI + +K + + + + G H + A Sbjct: 1 MEQITSAQNAKIKHA-------------------NKLKKKKERDKSGLVLVEGTHLIDEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + +A + + + + G A+ P Sbjct: 42 VKSRLTIKQLFIVEPERFDIELIEAAEEQ----YQINFKVAEALSGTVTPQGIFAIIEKP 97 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 +S ++ + +++LD + DP N+G ++R+A A + D I+ + + + +++ Sbjct: 98 DVSKQVEVAKQ---VLLLDRIQDPGNLGTLIRTADAAALDLIVMSPGSADPFQDKVLRAS 154 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ H+P I + + + + QE L+LG EG+G+ Sbjct: 155 QGSVFHLPIISQDIKEFVQDFDGPVYGTALDNAINFNEVESQEKFG----LLLGNEGQGV 210 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 P+ E T + M G ++LNV+ A ++ +Y Sbjct: 211 DPELLEYTTQRLTIPMYGEAESLNVAIAGSILIY 244 >gi|254390184|ref|ZP_05005404.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294817173|ref|ZP_06775815.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|326446044|ref|ZP_08220778.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|197703891|gb|EDY49703.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294321988|gb|EFG04123.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 278 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 88/268 (32%), Gaps = 6/268 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 ++ + +++ ++ R + GV +S A+ + L + L+ Sbjct: 4 VQRITSRNARFQQWEALLGNRRKRGSLRAFLVQGVRPISLAVEHGWPIDALLHDDRRKLS 63 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-TLDAVRNSQLLMVL 138 + + P+ + + GK L V L ++ Sbjct: 64 DWARELLRTVRAERFALAPELLADLGGKTEGAPELIAVVGMPADGLDRIEVGPDFLGVLF 123 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-----HIPYIRIS 193 D P NIG+++RSA AF G+I T + ++ +G+L +P Sbjct: 124 DRPTSPGNIGSVIRSADAFGAHGMIVTGHAADLYDPKSVRATTGSLFSLPAVRVPAPDEV 183 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 Q+ +G + + L++G E GL +E +M Sbjct: 184 MTWVERQRAAGLPLVLVGTDEKGDADVYDFDLTQPVLLLVGNETSGLSSAWRERCDAMVG 243 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G +LN + AA LY Sbjct: 244 IPMTGAASSLNAATAATAVLYEASRQRT 271 >gi|254385009|ref|ZP_05000343.1| rRNA methyltransferase [Streptomyces sp. Mg1] gi|194343888|gb|EDX24854.1| rRNA methyltransferase [Streptomyces sp. Mg1] Length = 288 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 96/248 (38%), Gaps = 11/248 (4%) Query: 45 QPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALARL--DWDANLPHPFPVKTVPP 98 + G V A+ + + + +L AT A R +A L V Sbjct: 31 KERRFIAEGPQAVREAVEHRGAGGASTLIELFATAEAAERYHDIVEAALAAGARVHYACD 90 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + + ++ + + +L+ VL HV DP N G +LR A A Sbjct: 91 EVLAEVSQTVTPQGLVGVCHFLDSPFEDILAARPKLVAVLAHVRDPGNAGTVLRCADAAG 150 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D ++ T + +++ G+L H+P + A++ + + G + + + Sbjct: 151 ADAVVLTDASVDLYNPKSVRASVGSLFHLPVAVGVPVEQAVEGLRAAGVRILAADGAGED 210 Query: 219 PLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L+ E A + G E GL +T+ A ++ + + G ++LN++ AAAV LY Sbjct: 211 DLDAELDAGTMGTPSAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 270 Query: 275 ITQN-HFA 281 + A Sbjct: 271 ASARAQRA 278 >gi|237802828|ref|YP_002888022.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT] gi|231274062|emb|CAX10856.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT] Length = 269 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 86/262 (32%), Gaps = 8/262 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 +N+ K + K + L G + AL + R A + D Sbjct: 6 KNNARVK--SALALKRQRARNSTYFLLEGFREIHRALISGYRCSHVFCGELIADKEIALD 63 Query: 85 ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLD 139 L ++K+ KE +A+ L + ++++ Sbjct: 64 RELTSLGIEKLYCSKDILEKLSFKENPENFIAVFEKKELSCQEFLGLQRKNQAPFYLIVE 123 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 P NIGA+LR A DG+I +S + + ++L + L Sbjct: 124 QAEKPGNIGALLRIADGAGVDGVILC-DPVVDLYNPNVIRSSLGIVFTMPVWQASLKEVL 182 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 +H +Q + ++ + + ++ G+E GL P + L M G Sbjct: 183 DLVHQQEWQVFTTTPSAQTFYFDQDFCQPMVVVFGSEKDGLSPDWLNGSFCNIALPMLGK 242 Query: 260 IKALNVSNAAAVALYITQNHFA 281 +LN+S++ A Y + Sbjct: 243 ADSLNLSSSVAAVAYEVVRQRS 264 >gi|169335511|ref|ZP_02862704.1| hypothetical protein ANASTE_01925 [Anaerofustis stercorihominis DSM 17244] gi|169258249|gb|EDS72215.1| hypothetical protein ANASTE_01925 [Anaerofustis stercorihominis DSM 17244] Length = 242 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 110/239 (46%), Gaps = 12/239 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V L R + +L ++N + L ++ +D + G Sbjct: 7 VIGRNAVRETLKAG-RNVNKLYISENHDSGLVSIIKMAKSKGISIQKTNNHKLDSMSG-S 64 Query: 109 AVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ +P+ + +L + L+++LD++ DPHN GAI+RSA DG Sbjct: 65 THHQGVLALCSPVETISLRELIEKMNEKVTKPLVVILDNITDPHNAGAIIRSAYCAGADG 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I R S S + KS++GA+EHI +SN+ + + G +GL + + + Sbjct: 125 VIMQTRRSASIGEGMYKSSAGAIEHIDLCEVSNIAQTIDTLKKEGLFVVGLDMNGENYYD 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +AL++GAEGKGL +E ++ + + +LN S AA + L+ Sbjct: 185 MD-YDMPLALVVGAEGKGLGRLIKEKCDFISSIPLKNDFDSLNASVAAGIVLFEAVKTR 242 >gi|94969640|ref|YP_591688.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter versatilis Ellin345] gi|94551690|gb|ABF41614.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter versatilis Ellin345] Length = 285 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 102/268 (38%), Gaps = 2/268 (0%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 S D R + K++++ R T + GVH + A+ + R + Sbjct: 18 SPNDRLRLITSRQNNAVKELRAAFHTGRPTD-DGYSAVEGVHLLEEAIRSGLRFKTIFFS 76 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 + +P + V E+ AL + Sbjct: 77 QAAEDRAGKLLPQIHSNVETLLLPDEVFSSAVLTESPQGVAALVKLKTFKLEDLLRAENP 136 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +L+ + V DP N+G ILRSA AF G++ + + + + + +SG++ +P +++ Sbjct: 137 MLLGVAGVQDPGNLGTILRSAEAFGATGVLIGDKTASPWNPKVIRGSSGSVFRLPVVKVE 196 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 AL+++ + G Q + SS +PL + +++G EG G+ + Sbjct: 197 WP-AALEQLRAKGVQILATSSHKGEPLPEVDFTGPTIVLIGGEGAGVPRDVLASVDGTLA 255 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281 + +++LN AA++ +Y Sbjct: 256 IPHSPKVESLNAGIAASIVMYEAARQRN 283 >gi|332976662|gb|EGK13502.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Psychrobacter sp. 1501(2011)] Length = 262 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 23/252 (9%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--------------PFPVKTVP 97 YG+H + A L + L + + +A ++ Sbjct: 8 YGIHAIHALLTHRPTDAMALFVQQGRSGKEGNNAAEEADSTFEEILQLAEQMGVSIQQAS 67 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRS 153 + + G + ++ + L +VLD + D HN+GA LR+ Sbjct: 68 RDKLTALCGSPQHQGVVLNARPLAMADEGEIATLAKAEDALFLVLDQITDAHNLGACLRT 127 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGL 212 A A D +I K +S S + +AK + GA+E +P I ++NL ++ S F Sbjct: 128 AAAMGVDAVICPKHHSASLTPTVAKVSVGAMEIMPVIAVTNLARCIENLKQSGVFVYGTA 187 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK----ALNVSNA 268 ++ K L K+A+I+G+EG+G+R T E + ++ M G +LNVS A Sbjct: 188 LDETAKALPDVDLKGKVAIIMGSEGEGMRRLTTERCDELVYIPMTGNKHGSLQSLNVSVA 247 Query: 269 AAVALYITQNHF 280 + LY Sbjct: 248 TGMVLYEVSRQR 259 >gi|255348768|ref|ZP_05380775.1| 23S rRNA methyltransferase [Chlamydia trachomatis 70] gi|255503308|ref|ZP_05381698.1| 23S rRNA methyltransferase [Chlamydia trachomatis 70s] gi|255506987|ref|ZP_05382626.1| 23S rRNA methyltransferase [Chlamydia trachomatis D(s)2923] gi|289525445|emb|CBJ14922.1| 23S rRNA methyltransferase [Chlamydia trachomatis Sweden2] gi|296434997|gb|ADH17175.1| 23S rRNA methyltransferase [Chlamydia trachomatis E/150] gi|296438717|gb|ADH20870.1| 23S rRNA methyltransferase [Chlamydia trachomatis E/11023] Length = 269 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 83/262 (31%), Gaps = 8/262 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 +N+ K + K + L G + AL + R A + D Sbjct: 6 KNNARVK--SALALKRQRARNSTYFLLEGFREIHRALISGYRCSHVFCGELIADKEIALD 63 Query: 85 ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLD 139 L ++K+ KE +A+ L + ++++ Sbjct: 64 RELTSLGIEKLYCSKGILEKLSFKENPENFIAVFEKKELSCQEFLGLQRKNQAPFYLIVE 123 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 P NIGA+LR A DG+I + + +S+ G + +P + S Sbjct: 124 QAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGTVFTMPVWQASLKEVLD 183 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 S +Q+ ++ G+E GL P + L M G Sbjct: 184 LVHQQEWQVFTTTPSAQTFYFDQD-FCQPTVVVFGSEKDGLSPDWLNGSFCNIALPMLGK 242 Query: 260 IKALNVSNAAAVALYITQNHFA 281 +LN+S++ A Y + Sbjct: 243 ADSLNLSSSVAAVAYEVVRQRS 264 >gi|33862923|ref|NP_894483.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Prochlorococcus marinus str. MIT 9313] gi|33634840|emb|CAE20825.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313] Length = 535 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 77/293 (26%), Positives = 132/293 (45%), Gaps = 20/293 (6%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL-------FLYGVHTV 57 S+++S++ + S + R R + S + E L+G H Sbjct: 127 SRRRSDERLGRRPSLGERSRPADRQLPSKRFDPSTSDRVPEAETFGPAAADDLLWGRHAS 186 Query: 58 SAALNNPSRKIFQLLATKNAL--ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQG 113 AAL R I ++ T + R V+ V + ++ G AVHQG Sbjct: 187 QAALEAG-RPIHRIWCTSDLRSAPRFLQLLREAKSSGVLVEEVTWARLGQLTG-GAVHQG 244 Query: 114 LALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 + L+TA + L ++ LL+ LD + DPHN+GAI+RSA A G++ + Sbjct: 245 IVLQTAAAETLDLQSLIEGCAGLGESPLLLALDGLTDPHNLGAIIRSAEALGAHGVVLPQ 304 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R S + +AK A+GALEH+P R+ NL +L+ + G++ IGL+ + L + Sbjct: 305 RRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEALKQAGYRVIGLAEEGDITLPDVDLD 364 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + ++ G+E +G+ T+ + + + G+ +LN S A A+ LY Sbjct: 365 GPLVIVTGSEKQGISLLTRRHCDQLVRVPLRGVTPSLNASVATAMCLYEVARR 417 >gi|295094660|emb|CBK83751.1| rRNA methylases [Coprococcus sp. ART55/1] Length = 285 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 91/256 (35%), Gaps = 18/256 (7%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + AL+ + LL ++ + P+ T P + Sbjct: 29 YEPASGLFIAESPKVIERALDAGYEPVSILLEDRHVEGQCADIIKRCGDIPIYTAPFDVL 88 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K+ G L L ++ + VL+ V +P N+GAI RSA A D Sbjct: 89 TKLTGFALTRGMLCAMRRAELPSVESVCEHAARIAVLEEVMNPTNVGAIFRSAAALGMDA 148 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPY------------------IRISNLTDALQKMH 203 ++ T S A+ + G + IP+ I L M Sbjct: 149 VLLTPGCSDPLYRRAARVSMGTVFQIPWTYITFDTLGLAHNKADHGIWPEFGMGQLHSMG 208 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + D++A+ILG EG+GL+ +T +++ + M + +L Sbjct: 209 FRTASMALRNDTIDIHDPELKQIDRLAVILGTEGEGLKTETIDSSDYTVKIPMYHGVDSL 268 Query: 264 NVSNAAAVALYITQNH 279 NV+ A+AVA + Sbjct: 269 NVAAASAVAFWELGRR 284 >gi|284031597|ref|YP_003381528.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836] gi|283810890|gb|ADB32729.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836] Length = 268 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 56/256 (21%), Positives = 97/256 (37%), Gaps = 8/256 (3%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY +++ N + + G + A + L L L Sbjct: 14 ADYVQLREVNLRRLLEEEHGLFIAEGDKVIRRAADAGYEP-RSFLLAPRWLDTLADVLEK 72 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDP 144 PV V + +++ G VH+G LD + + D + D Sbjct: 73 WPEAPVYLVSAELAEQVTGFH-VHRGALASYRRQAPADLDTLLAGVTHGRIAIFDDIVDH 131 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GA R+A A D ++ + + K + G + +P+ R+++ AL ++ Sbjct: 132 TNVGAGFRAAAALGVDAVLVSPTCADPLYRRSVKVSMGTVFQVPWTRVASWPGALDQLRE 191 Query: 205 WGFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 GF T + ++ K+ALI G EG GL P + M G + Sbjct: 192 HGFVTAAFALTDDSISLDELAARRDAKLALIFGTEGHGLSPHVLRQTDLTVKIPMAGGVD 251 Query: 262 ALNVSNAAAVALYITQ 277 +LNV+++AAVA Y T+ Sbjct: 252 SLNVASSAAVAFYATR 267 >gi|33240198|ref|NP_875140.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237725|gb|AAP99792.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 418 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 76/290 (26%), Positives = 129/290 (44%), Gaps = 17/290 (5%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNH-RDYKKMQSFNQKSRHT---SQPENLFLYGVHTVSAA 60 S + ++ + RN+ D+ + +K + N +G H+ A Sbjct: 103 SSSNKRQPNLVQSRRFTSFSRNNQNDFSQSTQEIEKPKQNFVFESESNDIFWGRHSTQAI 162 Query: 61 LNNPSRKIFQLLATKNAL--ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLAL 116 L + R I ++ T R V+ V + + VHQG+AL Sbjct: 163 LESG-RAIHRIWCTSEIRSSPRFFQLLKDAKALGVLVEEVSWARLGHVTT-GGVHQGIAL 220 Query: 117 ETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 +TA + L + S +L+ LD + DP N+GAI+RSA A G+I +R S Sbjct: 221 QTAASETFDLKTLIEGCQSIDESPVLIALDGLTDPQNLGAIVRSAEALGAHGLILPQRRS 280 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +AK A+GALEH+P R+ NL +L+++ G+ IGL+ + K + + + + Sbjct: 281 AGLTGSVAKVAAGALEHLPVARVVNLNRSLEELKKSGYTIIGLAGEGDKTINEITFDGPL 340 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L +G+E KGL T+ + + + G+ +LN S A +V LY Sbjct: 341 VLAIGSEEKGLSLLTRRHCDFLVKIPLRGVTTSLNASVATSVVLYEVARQ 390 >gi|315227398|ref|ZP_07869185.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105] gi|315119848|gb|EFT82981.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105] Length = 329 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 70/275 (25%), Positives = 124/275 (45%), Gaps = 26/275 (9%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQL-LATKNALARLDWDANLP 88 ++ + + R TS + + G ++V AL P+ ++ L + R Sbjct: 55 RLAARRRVDRFTSDSDEFVI-GRNSVLEALRAHVPASVLYVLNRIEHDDRTREIIRLAGL 113 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD--------------------A 128 + +D+I + HQG+ ++ AP TL Sbjct: 114 EGLKILEADRLEMDRIARTD-HHQGVIIKAAPYQYHTLQELADKAEAKASAMKAASPAAR 172 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L + LD V DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P Sbjct: 173 ALAQPLFIALDGVTDPQNLGAVIRSAAAFGANGVIIPERRSASVTASAWKVSAGAAAHLP 232 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQET 247 R+ NLT A++ + G+ +I L + + +D + ++LG+EGKG+ +E Sbjct: 233 VARVVNLTKAIESLKERGYYSIDLDGGGTATVGESGFESDPLIVVLGSEGKGISRLVREQ 292 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 S+ + M ++++LN S AA +AL+ A+ Sbjct: 293 CDSIVSIPMTSLVESLNASVAAGIALFSVHQARAR 327 >gi|324998026|ref|ZP_08119138.1| RNA methyltransferase [Pseudonocardia sp. P1] Length = 280 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 87/254 (34%), Gaps = 9/254 (3%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-- 85 + ++ + + G V AL+ + +L T A R Sbjct: 13 PRVAAARKLLRRP-GRDRAGRFLVEGAQAVREALDAC--PVHELFVTTAAAQRHPELVES 69 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V TV Q + +A+ + + + V ++DP Sbjct: 70 ARERGARVLTVTDQAAAGLSETVTPQGLVAVCDLLDVPLATALAGSPGFVTVCAGISDPG 129 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH-- 203 N+G ++R A A CD ++ + ++++G++ H+P R + + Sbjct: 130 NVGTVVRVADAAGCDAVLLAGDTVDPHNGKAVRASTGSVFHLPLARDRDAQGVVAACRSA 189 Query: 204 --SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + D P I +A ILG+E G P A + + G + Sbjct: 190 GLTTLVADGRGELDLHAPEAAPILAGPVAWILGSEAHGPGPDVFAAADHRVRVPIHGRAE 249 Query: 262 ALNVSNAAAVALYI 275 +LN++ AAA+ LY Sbjct: 250 SLNLATAAAICLYA 263 >gi|290968976|ref|ZP_06560511.1| RNA methyltransferase, TrmH family [Megasphaera genomosp. type_1 str. 28L] gi|290780932|gb|EFD93525.1| RNA methyltransferase, TrmH family [Megasphaera genomosp. type_1 str. 28L] Length = 270 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 101/284 (35%), Gaps = 24/284 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M+ I+ +++E+I KK + QK + + + + G ++ A Sbjct: 1 MDEITSRENERI------------------KKACALKQK-KERQKQRKVLVEGWRLIADA 41 Query: 61 LNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALE 117 + + + A R L + V P+ DK+ + A+ Sbjct: 42 AAQGLSPVQCFITPQAATHERFQGLYALGKRLSWQFFVVAPKVYDKLKETQHPQGIAAVL 101 Query: 118 TAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 + L + + + ++ L V DP N+G+I+R+A A ++ ++ + + Sbjct: 102 PYFTTALDLTERIAPQRPIVYLQSVQDPGNLGSIIRTAAAADAGAVVLSRDSVDVYNDKV 161 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 +SA GA+ IP + ++ + G ++ Q L G E Sbjct: 162 LRSAMGAVFKIPLVTDVDMETLQAYCLRTHRRLTGAAASGSSSYTQLDYAQARVLAFGNE 221 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NH 279 G GL + + M ++LN++ A + LY Sbjct: 222 GNGLALPFLQACAETVTIPMRPETESLNLAAAVGIVLYKAWERQ 265 >gi|238854475|ref|ZP_04644814.1| rRNA methylase [Lactobacillus jensenii 269-3] gi|260665477|ref|ZP_05866324.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US] gi|282934545|ref|ZP_06339797.1| rRNA methylase [Lactobacillus jensenii 208-1] gi|313471838|ref|ZP_07812330.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153] gi|238832902|gb|EEQ25200.1| rRNA methylase [Lactobacillus jensenii 269-3] gi|239529248|gb|EEQ68249.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153] gi|260560745|gb|EEX26722.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US] gi|281301383|gb|EFA93675.1| rRNA methylase [Lactobacillus jensenii 208-1] Length = 255 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 52/278 (18%), Positives = 98/278 (35%), Gaps = 24/278 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ I + K ++ Q + G H V A Sbjct: 1 MQKITSTTNQTIK-------------------NLAKLNKKKYREQEGYYLIEGFHLVDEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 + + LLAT A +L+ L + + + + + Sbjct: 42 FKSKLNFKY-LLATPAAFEKLNIQYQLDLTDKRLVQINERVAKHLSATTNSQDVFMVLKI 100 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 LL D + DP NIG I+R+A A +G++ ++ + + ++ Sbjct: 101 NQPKHFTFNFGKWILL---DSLADPGNIGTIIRTADAAGFNGVVLSENCADLYNPKTQRA 157 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 G+ H+P I+ L Q ++ + D K L K ++ALI+G E G Sbjct: 158 MQGSQFHLPIIKADLLKTIEQFKENYIPVYASVLDDEAKELPDFEKTKELALIIGNEANG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + A + + G ++LN + AA + +Y Sbjct: 218 VSDEAVNLADEKLFIPIKGQAESLNAAIAAGIMIYHFA 255 >gi|159040149|ref|YP_001539402.1| RNA methyltransferase [Salinispora arenicola CNS-205] gi|157918984|gb|ABW00412.1| RNA methyltransferase, TrmH family, group 3 [Salinispora arenicola CNS-205] Length = 372 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 111/253 (43%), Gaps = 11/253 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKT 95 + + ++ L G + V +L I + + + Sbjct: 118 RRSNPAKDAPELLVGRNPVLESLRANVPAIALYVAQGLNSDDRISEIVRTAADRGIAMLE 177 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGA 149 V +D++ G +HQG+ L+ P + + + LL+ LD V DP N+GA Sbjct: 178 VSRAELDRMTG-GVLHQGVGLQVPPFRYEPFEDLTAAALEQAAPLLVALDGVTDPRNLGA 236 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ++RSA AF G+ +R + +A ++++GA +P +++NLT AL+ GF Sbjct: 237 VIRSAAAFGAQGVFLPERRAAGITATAWRTSAGAAARVPVAQVTNLTRALKACKDAGFVV 296 Query: 210 IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL +D + L + + +++G+EG+GL ET + M +++LN S A Sbjct: 297 VGLDADGETDLYHLEASVGPLVVVVGSEGRGLSRLVGETCDLTVQIPMVSDVESLNASVA 356 Query: 269 AAVALYITQNHFA 281 AAV L A Sbjct: 357 AAVTLAEVARRRA 369 >gi|238061385|ref|ZP_04606094.1| RNA methyltransferase trmH [Micromonospora sp. ATCC 39149] gi|237883196|gb|EEP72024.1| RNA methyltransferase trmH [Micromonospora sp. ATCC 39149] Length = 376 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 60/253 (23%), Positives = 112/253 (44%), Gaps = 11/253 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKT 95 + + ++ L G + V +L P+ ++ + + + Sbjct: 122 RKSNPAKDTPELLVGRNPVLESLRAQVPATALYTAHGIEIDDRVNEIVRTAADRGIAILE 181 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGA 149 + +D++ G +HQG+ L+ P + + + LL+ LD V DP N+GA Sbjct: 182 ISRAELDRMTG-GVLHQGIGLQVPPFAYEPFEDLVAAALEQTAPLLVALDGVTDPRNLGA 240 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ++RSA AF G+ +R + +A ++++GA +P +++NLT +L+ GF Sbjct: 241 VIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACQDAGFMV 300 Query: 210 IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL +D L + +++G+EG+GL ET + M +++LN S A Sbjct: 301 VGLDADGDTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIPMVSEVESLNASVA 360 Query: 269 AAVALYITQNHFA 281 AAV L A Sbjct: 361 AAVTLAEVARRRA 373 >gi|257057470|ref|YP_003135302.1| rRNA methylase, putative, group 3 [Saccharomonospora viridis DSM 43017] gi|256587342|gb|ACU98475.1| rRNA methylase, putative, group 3 [Saccharomonospora viridis DSM 43017] Length = 312 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 109/246 (44%), Gaps = 12/246 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNN--PSRKIFQLL-ATKNALARLDWDANLPHPFPVKTVPP 98 ++ + G + V AL P+ ++ L + + VP Sbjct: 58 KKAEEAPEIIAGRNPVVEALRADVPATALYVALNIDADDRVTEAVRMAADKGVSILEVPR 117 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAIL 151 +D+ AVHQGL L+ P T D LL+ LD V DP N+GAI+ Sbjct: 118 TELDRKTD-GAVHQGLGLQVPPFSYATPDELLQTARESGEPPLLVALDGVTDPRNLGAII 176 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA AF G++ R S +AV ++++GA +P +NLT L++ + G G Sbjct: 177 RSAAAFGAHGVLLPSRRSAGMTAVAWRTSAGAAARLPVGMATNLTRQLKEWAAEGLLIAG 236 Query: 212 LSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 L +D ++ + D + +++G+EG+GL +ET + M +++LN S A A Sbjct: 237 LDADGSTDIDTMNIDVDPLVVVVGSEGRGLSRLVRETCDFTVSIPMASGVESLNASVAGA 296 Query: 271 VALYIT 276 V L Sbjct: 297 VLLAEI 302 >gi|291528877|emb|CBK94463.1| rRNA methylases [Eubacterium rectale M104/1] Length = 302 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 93/284 (32%), Gaps = 35/284 (12%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ +R + + AL+ + L+ TK+ Sbjct: 19 YARLTENQLLNRANPKEGMFIAESPKVIERALDAGCEPVSLLMETKHVNGEARGIIERCQ 78 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + K+ G L P + R+++ + VL+ V +P N+GA Sbjct: 79 NIPVYTASFDLLTKLTGFALTRGTLCAMYRPKPRSVEEVCRDARRVAVLEDVVNPTNVGA 138 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T S + + G + +P+ S Sbjct: 139 IFRSAAALHMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWAYFPKYNVGSDNTFSDASLH 198 Query: 210 IGLSSDSKKPLEQE-----------------------------------IKNDKIALILG 234 S + ++ +++A++LG Sbjct: 199 DKCDSSDQNCSDRNSSVYKYNIDVLHKLGFKTCAMALTDDSVSIDDPVLHSEERLAIVLG 258 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 EG GL +T ++ + M + +LNV+ A+AVA + Sbjct: 259 TEGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFWELAK 302 >gi|238924067|ref|YP_002937583.1| hypothetical protein EUBREC_1705 [Eubacterium rectale ATCC 33656] gi|238875742|gb|ACR75449.1| hypothetical protein EUBREC_1705 [Eubacterium rectale ATCC 33656] Length = 302 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 93/284 (32%), Gaps = 35/284 (12%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ +R + + AL+ + L+ TK+ Sbjct: 19 YARLTENQLLNRANPKEGMFIAESPKVIERALDAGCEPVSLLMETKHVNGEARGIIERCQ 78 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + K+ G L P + R+++ + VL+ V +P N+GA Sbjct: 79 NIPVYTASFDLLTKLTGFALTRGTLCAMYRPKPRSVEEVCRDARRVAVLEDVVNPTNVGA 138 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T S + + G + +P+ S Sbjct: 139 IFRSAAALHMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWAYFPKYNVGSDNTFSDASLH 198 Query: 210 IGLSSDSKKPLEQE-----------------------------------IKNDKIALILG 234 S + ++ +++A++LG Sbjct: 199 DKCDSSDQNCSDRNSSAYKYYIDVLHKLGFKTCAMALTDDSVSIDDPVLHSEERLAIVLG 258 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 EG GL +T ++ + M + +LNV+ A+AVA + Sbjct: 259 TEGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFWELAK 302 >gi|159045111|ref|YP_001533905.1| RNA methyltransferase [Dinoroseobacter shibae DFL 12] gi|157912871|gb|ABV94304.1| RNA methyltransferase [Dinoroseobacter shibae DFL 12] Length = 263 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 91/240 (37%), Positives = 134/240 (55%), Gaps = 10/240 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + ++L+G+H V AL NP+R +L+ T+NA +L P + P+ + Sbjct: 22 QTVWLFGLHAVRDALENPARTKLRLVVTRNAADKLAEAIAGAGIAP-EIADPRRFPAPLD 80 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 +VHQG ALE PL L L+++LD V DPHN+GAILRSA F Sbjct: 81 PGSVHQGAALEVKPLAWGPLAETVLTGPADRPPLVVLLDRVTDPHNVGAILRSAEVFGAA 140 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I+T R + E+ LAK+ASGALE PY+R+ NL + ++++ + GF +GL ++ + Sbjct: 141 AVISTARSAAPETGALAKTASGALERQPYLRVRNLAETMEELRAMGFVLLGLDGTAEDTI 200 Query: 221 EQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + IAL+LGAEG GLR KT+ET + + +LNVSNAAAVALY + Sbjct: 201 GTALRDLTDRPIALVLGAEGPGLRDKTKETCNRLVKIPFARDFGSLNVSNAAAVALYACR 260 >gi|312898933|ref|ZP_07758321.1| RNA methyltransferase, TrmH family [Megasphaera micronuciformis F0359] gi|310620095|gb|EFQ03667.1| RNA methyltransferase, TrmH family [Megasphaera micronuciformis F0359] Length = 271 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 91/258 (35%), Gaps = 5/258 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++R K QK ++ + L G V A++ L+A + Sbjct: 6 SRDNRLVKLAVRLQQK-KYRYEERRLIAEGFRIVEDAVHMGITDGICLVAAEIVERPELQ 64 Query: 84 DANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDAVRNSQLLMVLD 139 + + +P + +K+ + A+ L V N + ++ L+ Sbjct: 65 NLQAESEKVGWEWYLLPDRIYEKVKETHSSQGITAILPFFEYTFKNLPEVANERPILYLE 124 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N+G ILR+A A + + + + +SA GA+ +P ++ +L Sbjct: 125 AIQDPGNLGTILRTAAAANVGAVFLSPDCVDLYNGKTVRSAMGAIFKVPVVQNVSLERIS 184 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 G + K Q + G EG GL E + M Sbjct: 185 AFCDEKKRILTGTLLGANKLYTQVDWRQPTVIAFGNEGNGLSQACAEACRQALTIPMKSH 244 Query: 260 IKALNVSNAAAVALYITQ 277 ++LN++ + AV LY Sbjct: 245 TESLNLATSVAVVLYKAW 262 >gi|300311508|ref|YP_003775600.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1] gi|300074293|gb|ADJ63692.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 58/283 (20%), Positives = 108/283 (38%), Gaps = 25/283 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M LI+ K ++ +K+++ S+ + L GVH A Sbjct: 1 MKLITSK------------------DNPLFKELKQLASSSQARRRAGQSLLDGVHLAQAW 42 Query: 61 LNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVK-TVPPQTIDKIVGKEAVHQGLALET 118 L + ++A + + V + V GL L Sbjct: 43 LQHRGAPQLCVVAESAQYHPEVAPILAQCEALQAQCLVLADKLYDAVSTVDNGVGLFLLV 102 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 A ++ A+ S +L+ D + DP N+G+ILRSA A + + + S + + Sbjct: 103 ATPVASAPKALTESAVLL--DGLQDPGNLGSILRSAAAAGVRQVFCSPGTVAAWSPKVLR 160 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + GA + + ++L + + + SS + + + + +A +LG EG+ Sbjct: 161 AGMGAHFVLDIVEDADL---VALCAASRIPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQ 217 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G+ QE AT + G +++LNV+ AAAV L+ Sbjct: 218 GVSAALQEAATQEVVIPHLGQMESLNVAAAAAVCLFEQLRQRT 260 >gi|227903249|ref|ZP_04021054.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796] gi|227869054|gb|EEJ76475.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796] Length = 250 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 113/246 (45%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101 F++G H L + KI ++ + V++VP + Sbjct: 3 SNKDFVFGRHAGLDYLKTQNADKINKVFLQHGIQEDFANQVYALSKKKRLVVQSVPKNKL 62 Query: 102 DKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSA 154 D++V HQGL L + L D L++LD + DPHN+G+ILR+A Sbjct: 63 DRLVD-GGNHQGLVLAISSFDYADLGKMLDKFDEDGKEPFLLMLDSIEDPHNLGSILRTA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A DG+I KR++ ++V+AK+++GA++++P R++NL +++ G+ G Sbjct: 122 DATGVDGVIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWFFGTDM 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E K K L++G EGKG+ P ++ L M G +++LN S A V LY Sbjct: 182 AGVDYREWNAK-GKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLY 240 Query: 275 ITQNHF 280 N Sbjct: 241 QAYNSR 246 >gi|226355931|ref|YP_002785671.1| rRNA (adenosine-2-O-)-methyltransferase (SpoU rRNA methylase) [Deinococcus deserti VCD115] gi|226317921|gb|ACO45917.1| putative rRNA (adenosine-2-O-)-methyltransferase (SpoU rRNA methylase) [Deinococcus deserti VCD115] Length = 270 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 60/273 (21%), Positives = 106/273 (38%), Gaps = 18/273 (6%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E I SL++ H +L R + R + + G ++ A+ S Sbjct: 5 ETITSLQNPHVKRLVR-----------LRNRREREAHGVILIEGARELARAVQ-GSVPPH 52 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 L + P + +K+ G+E L A L +P L Sbjct: 53 TLYCCPELYSPEARSLAATLPGDRLELSRAAFEKVSGRENP--DGLLGVADLPAPRLPEP 110 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 N +L+VL + P N+GAILRSA A G++ R + + +S+ G++ Sbjct: 111 GNDAVLVVLHGLEKPGNVGAILRSADAAGAQGVLVLGRGADPYGPNVIRSSQGSVFT-MP 169 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + AL+ + + GF T+ + D+ + ++AL+LG E GL + Sbjct: 170 VAVLDEGTALEWLSTRGFTTVACTPDAPRTYWDAPLTGRVALLLGTEHAGLPESWR-HTD 228 Query: 250 SMAHLHMPGI--IKALNVSNAAAVALYITQNHF 280 + M +LNV+ AAA+ L+ Sbjct: 229 HSVSIPMHEGSGADSLNVATAAALVLFECARQR 261 >gi|331699814|ref|YP_004336053.1| TrmH family RNA methyltransferase [Pseudonocardia dioxanivorans CB1190] gi|326954503|gb|AEA28200.1| RNA methyltransferase, TrmH family, group 3 [Pseudonocardia dioxanivorans CB1190] Length = 329 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 64/255 (25%), Positives = 109/255 (42%), Gaps = 12/255 (4%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQLLA-TKNALARLDWDANLPHPFPV 93 N+ R + G + V L + + + T + + + Sbjct: 73 NRSRRAGDGETPETVLGRNPVVECLRAGVPATALHVAVGATADERVKEAVHLAADAGISI 132 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHN 146 VP +D++ G A+HQG+AL P D L+ LD V DP N Sbjct: 133 LEVPRNDLDRMAG-GALHQGVALVVPPYEYAHPDELLEAAVGSGRPALIAALDGVMDPRN 191 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GA++RS AF G++ +R + +AV ++++G +P R +NLT LQ+ + G Sbjct: 192 LGAVVRSVSAFGGHGVVVPQRRAAGMTAVAWRTSAGTAARLPVARATNLTRTLQEYANTG 251 Query: 207 FQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GL++D ++ D + L++G+EGKGL +ET + + +++LN Sbjct: 252 LMVAGLAADGDVSIDDFDLATDPLVLVIGSEGKGLSRLVRETCDVTVSIPLAREVESLNA 311 Query: 266 SNAAAVALYITQNHF 280 S AA V L Sbjct: 312 SVAAGVVLAEVARRR 326 >gi|315106473|gb|EFT78449.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL030PA1] Length = 318 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 14/247 (5%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQ 99 ++ G + V AL+ + + A R H + Sbjct: 66 KGAGPEWVIGRNPVLEALHVG-LPVRTAYVAEGAEHDSRLREILTFAADHGIALMQATRG 124 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILR 152 +D++ G + HQG+AL T+D + L++ LD V DP N+GAI+R Sbjct: 125 ELDRMTG-GSNHQGVALRLPEYEYATVDDLIAAGNQTYHGGLIVALDKVTDPRNLGAIIR 183 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA AF G++ R S S +A K+++GA +P SNL AL K + G+ +GL Sbjct: 184 SAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARVPVAMASNLNQALGKFAATGWMIVGL 243 Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + ++ + + + L++G+EG+GL T+++ + + + +++LN S AA++ Sbjct: 244 AGEADSDIAAAPGLDGPLVLVVGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASI 303 Query: 272 ALYITQN 278 ALY Sbjct: 304 ALYEASR 310 >gi|311113579|ref|YP_003984801.1| SpoU rRNA methylase family protein [Rothia dentocariosa ATCC 17931] gi|310945073|gb|ADP41367.1| SpoU rRNA methylase family protein [Rothia dentocariosa ATCC 17931] Length = 290 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 60/253 (23%), Positives = 102/253 (40%), Gaps = 4/253 (1%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 R Y + +S V AL+ R + L ++ L Sbjct: 36 RYYTHLTDVRLRSALEPDWGIYIAESSKVVRRALHAGHRPL-SFLMSEKWADDLSDVLTK 94 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + P + +++I G LA P D + + + +L+ + D N+ Sbjct: 95 YNNIPAFVGSEEELERITGFHLHRGALAAMARPAPQTVEDIIYGAHRVAILEDIVDHTNV 154 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RSA A D ++ T R + + + G + +P+ RI+ L+ +H GF Sbjct: 155 GAIFRSAAALGVDAVLITPRCADPLYRRSIRVSMGTVFQVPWARITRWPKDLEILHEHGF 214 Query: 208 QTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ L+ D ++ K+ALILG EG GL P T + M + +LN Sbjct: 215 ESAALALDEDSLTLGQLSARQDKKLALILGTEGHGLSPHTLAQTKHTVMIPMTHGVDSLN 274 Query: 265 VSNAAAVALYITQ 277 V+ A+AVA + T+ Sbjct: 275 VAAASAVAFWETR 287 >gi|300741487|ref|ZP_07071508.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567] gi|300380672|gb|EFJ77234.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567] Length = 273 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 60/253 (23%), Positives = 102/253 (40%), Gaps = 4/253 (1%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 R Y + +S V AL+ R + L ++ L Sbjct: 19 RYYTHLTDVRLRSALEPDWGIYIAESSKVVRRALHAGHRPL-SFLMSEKWADDLSDVLTK 77 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + P + +++I G LA P D + + + +L+ + D N+ Sbjct: 78 YNNIPAFVGSEEELERITGFHLHRGALAAMARPAPQTVEDIIYGAHRVAILEDIVDHTNV 137 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RSA A D ++ T R + + + G + +P+ RI+ L+ +H GF Sbjct: 138 GAIFRSAAALGVDAVLITPRCADPLYRRSIRVSMGTVFQVPWARITRWPKDLEILHEHGF 197 Query: 208 QTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ L+ D ++ K+ALILG EG GL P T + M + +LN Sbjct: 198 ESAALALDEDSLTLGQLSARQDKKLALILGTEGHGLSPHTLAQTKHTVMIPMTHGVDSLN 257 Query: 265 VSNAAAVALYITQ 277 V+ A+AVA + T+ Sbjct: 258 VAAASAVAFWETR 270 >gi|296533966|ref|ZP_06896485.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957] gi|296265710|gb|EFH11816.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957] Length = 250 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 129/242 (53%), Gaps = 3/242 (1%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 R + P L+LYG+HTV+AAL NP R++ +LL T A A L P + V Sbjct: 7 PREATPPNTLWLYGLHTVAAALANPRRRLKRLLLTAEAEAALAEKLPRPWKLQAERVERA 66 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + ++AVHQG AL PL L+ ++ +++LD V DP N+GAILRSA AF Sbjct: 67 RFQTFLTEDAVHQGAALLVEPLPPVALEDALEKSRGTVLLLDQVTDPRNVGAILRSAAAF 126 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 ++ R +P E+ +A++A GAL+ +P +R NL + + G+ +GL +K Sbjct: 127 GAAAVVMQDRNAPPETGAMARAAVGALDTVPVVREVNLARTITVLQKAGYWVMGLDGTAK 186 Query: 218 KPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L D AL+LGAE GLR +ET + L + +++LNVS AAA+ALY Sbjct: 187 TELAAAKPTDRPAALVLGAEDSGLRRLQRETCDELVKLPIRPEMESLNVSVAAAIALYEL 246 Query: 277 QN 278 Sbjct: 247 SR 248 >gi|282853445|ref|ZP_06262782.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes J139] gi|282582898|gb|EFB88278.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes J139] gi|313835566|gb|EFS73280.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL037PA2] gi|314922188|gb|EFS86019.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL001PA1] gi|314928559|gb|EFS92390.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL044PA1] gi|314965269|gb|EFT09368.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL082PA2] gi|314970347|gb|EFT14445.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL037PA3] gi|314982475|gb|EFT26568.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL110PA3] gi|315092231|gb|EFT64207.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL110PA4] gi|315094029|gb|EFT66005.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL060PA1] gi|315104399|gb|EFT76375.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL050PA2] gi|327329367|gb|EGE71127.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL103PA1] gi|328908174|gb|EGG27933.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium sp. P08] Length = 318 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 14/247 (5%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQ 99 ++ G + V AL+ + + A R H + Sbjct: 66 KGAGPEWVIGRNPVLEALHVG-LPVRTAYVAEGAEHDSRLREILTFAADHGIALMQATRG 124 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILR 152 +D++ G + HQG+AL T+D + L++ LD V DP N+GAI+R Sbjct: 125 ELDRMTG-GSNHQGVALRLPEYEYATVDDLIAAGNQTYHGGLIVALDKVTDPRNLGAIIR 183 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA AF G++ R S S +A K+++GA +P SNL AL K + G+ +GL Sbjct: 184 SAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARVPVAMASNLNQALGKFAATGWMIVGL 243 Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + ++ + + + L++G+EG+GL T+++ + + + +++LN S AA++ Sbjct: 244 AGEADSDIAAAPGLDGPLVLVVGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASI 303 Query: 272 ALYITQN 278 ALY Sbjct: 304 ALYEASR 310 >gi|50841866|ref|YP_055093.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes KPA171202] gi|50839468|gb|AAT82135.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes KPA171202] Length = 318 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 14/247 (5%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQ 99 ++ G + V AL+ + + A R H + Sbjct: 66 KGAGPEWVIGRNPVLEALHVG-LPVRTAYVAEGAEHDSRLREILTFAADHGIALMQATRG 124 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILR 152 +D++ G + HQG+AL T+D + L++ LD V DP N+GAI+R Sbjct: 125 ELDRMTG-GSNHQGVALRLPEYEYATVDDLIAAGNQTYHGGLIVALDKVTDPRNLGAIIR 183 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA AF G++ R S S +A K+++GA +P SNL AL K + G+ +GL Sbjct: 184 SAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARVPVAMASNLNQALGKFAATGWMIVGL 243 Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + ++ + + + L++G+EG+GL T+++ + + + +++LN S AA++ Sbjct: 244 AGEADSDIAAAPGLDGPLVLVVGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASI 303 Query: 272 ALYITQN 278 ALY Sbjct: 304 ALYEASR 310 >gi|72382102|ref|YP_291457.1| RNA methyltransferase TrmH [Prochlorococcus marinus str. NATL2A] gi|72001952|gb|AAZ57754.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. NATL2A] Length = 416 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 71/287 (24%), Positives = 131/287 (45%), Gaps = 17/287 (5%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQS---FNQKSRHTSQPENLFLYGVHTVSAALN 62 + E+ S ++ K + YK+ ++ + + + ++G H+ AAL Sbjct: 106 SNRFER-KSTNPAYRNKNSQGASSYKREENNEPLSYSESFSKTLSDDLIWGRHSTEAAL- 163 Query: 63 NPSRKIFQLLATKNAL--ARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 R I ++ T + V+ V + ++ AVHQG+ L+ Sbjct: 164 VGGRAIHRIWCTSELRSTPKFFQLLKDQKASGVLVEEVSWSRLGQLT-NGAVHQGIVLQI 222 Query: 119 APLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 A + L + ++ LL+ LD + DP N+GAI+RSA A G+I +R S Sbjct: 223 AASKTLDLKNLIDACKAFGDSSLLLALDGLTDPQNLGAIIRSAEALGAQGLILPQRRSAG 282 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + +AK A+GALEH+P R+ NL +L+K+ G+ +GL+ + L + + + Sbjct: 283 LTGSVAKVAAGALEHLPVARVVNLNRSLEKLKDEGYTVVGLAEEGSSTLSEIKFQGPLVV 342 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++G+E KG+ T+ + + + G+ +LN S A ++ LY Sbjct: 343 VVGSEDKGISLITRRLCDQLVRIPLKGVTTSLNASVATSIFLYEVAR 389 >gi|320527640|ref|ZP_08028814.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei F0204] gi|320131961|gb|EFW24517.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei F0204] Length = 238 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 11/237 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 F+YG + V L + S KI Q+ + + R +K V +T+ ++ + Sbjct: 4 FVYGKNVVKQMLMDNS-KIKQIYMSVD--DRDVEQLAHKQRVQLKRVDKKTLTQMTKTDR 60 Query: 110 VHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ E P ++D + + L+++LD + DPHN+GAILR+A A G+I Sbjct: 61 -HQGVVAEVDPYRLYSVDEIVQNVSEDGKGLIIMLDELEDPHNLGAILRTADAIGATGVI 119 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + +A +AK ++GA++ + ++NL + + + Sbjct: 120 FKKTNAVGLTATVAKVSAGAIDTVKCASVTNL-SRTLEDLQKKGWWAVGTDMDGQDYRSV 178 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + LI+G EGKG+ +E + L M G I++LN + +A + +Y N Sbjct: 179 KYDFNTVLIIGNEGKGISRLLREKCDFVVSLPMRGKIESLNAAVSAGILMYSIYNMR 235 >gi|296140117|ref|YP_003647360.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM 20162] gi|296028251|gb|ADG79021.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM 20162] Length = 265 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 94/246 (38%), Gaps = 11/246 (4%) Query: 35 SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94 S ++ + G + V++AL + ++ T++ AR V Sbjct: 24 SKLLRAAGRRKAGLFLAEGSNAVTSALAAG--LVDEIFVTEDGAARYPDLLT----GRVA 77 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 V + + + +A+ A D R L+ V V +P N G ++R A Sbjct: 78 YVTDRAMRGLSDTVTPPGIVAVCRALPEGRVPDGAR---LVAVPVDVAEPGNAGTVIRVA 134 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--IGL 212 A D ++ + + ++++G++ H+P ++ + + A+ ++ G Sbjct: 135 DAVGADAVLLAGDAVDPMNGKVVRASAGSVFHLPVVQERDASAAIAQLKESGLTVLATAA 194 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + E+ A + G E GL Q A + + G ++LN++ AA++ Sbjct: 195 DGEVSLDDADEMLAAPTAWLFGNEAHGLPRGLQAAADHRIAIPIRGRAESLNLATAASIC 254 Query: 273 LYITQN 278 LY + Sbjct: 255 LYASSR 260 >gi|217967693|ref|YP_002353199.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724] gi|217336792|gb|ACK42585.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724] Length = 269 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 51/284 (17%), Positives = 97/284 (34%), Gaps = 28/284 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + H R + + + G + A Sbjct: 1 MKFISSPSNEVIKEVIKLHDKNKR-------------------KKLKKCIVEGWRLIQDA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETA 119 N +++ R D + + V ++KI E + Sbjct: 42 KENGIFIEKLIISKSLWNKRRDEILKSFSSYDLYIVEDNLMEKISLMETPPGIMGVFPLF 101 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L +N+++++ D + DP N+G I+R A D +I ++ + + + Sbjct: 102 LFPKWELLEEKNNKIVLFSDDIQDPGNLGTIIRIADGVGVDAVILSENTVDPYNYKVIRG 161 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ++G++ +P T ++ I K QE + LILG E G Sbjct: 162 STGSIFRVPIWVSDKKTFIEFFKG---WKVIIADPKGSKVYFQENLRESFVLILGNEAWG 218 Query: 240 LRPKTQETATS---MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 R + + + + + + +LNVS AA+V L+ Q Sbjct: 219 TRKE--KYIDLDPILLKIPLREGVDSLNVSIAASVFLFEAQRQR 260 >gi|239942333|ref|ZP_04694270.1| putative tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] gi|239988798|ref|ZP_04709462.1| putative tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 11379] gi|291445791|ref|ZP_06585181.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] gi|291348738|gb|EFE75642.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] Length = 318 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 13/246 (5%) Query: 48 NLFLYGVHTVSAALNNPSRKI---FQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDK 103 + + G + V AL + + Q + R + P +D+ Sbjct: 74 SEMVVGRNPVYEALRDGVPAVTLYVQQYIDNDERVRDVLKLAGDRGNINLMEAPRPELDR 133 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQGL L+ P D L++ LD V DP N+GAI+RS A Sbjct: 134 MTNGL-NHQGLVLQVPPYEYAHPDDLLAAADDNHEDPLIVALDGVTDPRNLGAIVRSVSA 192 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F G++ +R + +A KS++G P R++NLT AL+ G +GL++D Sbjct: 193 FGGHGVVVPERRAAGMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADG 252 Query: 217 KKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + +E E + + +++G+EGKGL ET + MPG ++LN AA + LY Sbjct: 253 EHTVEDLEELDGPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYE 312 Query: 276 TQNHFA 281 A Sbjct: 313 VARRRA 318 >gi|149280368|ref|ZP_01886489.1| putative tRNA/rRNA methyltransferase [Pedobacter sp. BAL39] gi|149228917|gb|EDM34315.1| putative tRNA/rRNA methyltransferase [Pedobacter sp. BAL39] Length = 249 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 91/254 (35%), Gaps = 10/254 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 ++S +QK ++ + + G+ +++ + + + + +LP Sbjct: 6 QISFIKSLHQK-KYRKENGIFIIEGIKSIAEFIQSSYQVHSIYYLAQYQ----SLLPSLP 60 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + V ++KI + LAL P S + +VLD V DP N+G Sbjct: 61 ANIKLFEVNNAELEKISTLQTPQGILALVNIPKTSGLDIELLKGNFSLVLDDVQDPGNLG 120 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R+A F II + + ++ G+L + Sbjct: 121 TIIRTAEWFGFRQIICSPHTVEVYNPKTVQATMGSLSRLKVYYTDLAPLLSNTPVPVFGA 180 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + S + E +ILG EG+G+ P+ + T + G ++LNV+ Sbjct: 181 VLDGKSIYEGGWGTEGL-----VILGNEGQGISPEIMKLITHPVTIPRVGAAESLNVAIC 235 Query: 269 AAVALYITQNHFAK 282 AA+ + K Sbjct: 236 AAILCADISRNLNK 249 >gi|71065108|ref|YP_263835.1| tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4] gi|71038093|gb|AAZ18401.1| probable tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4] Length = 268 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 96/265 (36%), Gaps = 6/265 (2%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + + K ++S ++R + + GVH + AAL + F + Sbjct: 4 NPTELITSDKNTTVKLVKSLLTQARQRKKHGLTVIEGVHLIDAALRSDYP--FDQILVSE 61 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 + + + P T D + A + P ++ + Sbjct: 62 STHKNPEVQQILTRLPTYTPILTLADALYESIRSLGTGIDIMAMIKVPAPSLSMINEDCL 121 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +L+ V D N+G +LR+A A I+ T + + S ++ GA + ++ Sbjct: 122 ILNDVQDSGNVGTLLRTAAAVGIKNILCTSATAQAWSPKTLRAGMGAQFALNIYEGLSVQ 181 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + L + + F T + + IA I+G EG+G+ + + + L Sbjct: 182 EVLDHVETPLFATSSHTDTVIYQHD---LKSPIAWIMGHEGQGVCDELMQ-CATPIALPQ 237 Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281 P ++LNV+ A ++ LY T Sbjct: 238 PNGQESLNVAIAGSLCLYETLRQRN 262 >gi|218295896|ref|ZP_03496676.1| RNA methyltransferase, TrmH family, group 3 [Thermus aquaticus Y51MC23] gi|218243634|gb|EED10162.1| RNA methyltransferase, TrmH family, group 3 [Thermus aquaticus Y51MC23] Length = 238 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 110/236 (46%), Gaps = 13/236 (5%) Query: 50 FLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++YG + V AL R++ + L + VP +D ++ K Sbjct: 2 WIYGRNPVLEALREGRAREVLVARGVEGWLLKELDRL----GASYTLVPRIELDTLL-KT 56 Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+A +L+ LL+ LD + DP N GA++RSA+A G Sbjct: 57 THHQGIAALVEEPRYASLEEAFLLAQKRGEPPLLVALDGITDPRNYGAMIRSALALGAHG 116 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +++ +R + S + K+++GA +P IR+ NL AL+++ G GL +K Sbjct: 117 VLSEERRAAPLSPLALKASAGAALKLPVIRVKNLPRALKELKERGVWVYGLDLKGEKAPR 176 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +AL++G+EG+G+R +E+ + + + ++LN S A ++ALY Sbjct: 177 ELDFKRPLALVVGSEGEGMRRLVRESCDELFRIPIRPEAESLNASVALSIALYQAA 232 >gi|90416564|ref|ZP_01224495.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2207] gi|90331763|gb|EAS46991.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2207] Length = 231 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 12/230 (5%) Query: 61 LNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L + ++ +L ++ + H ++ + +D V A HQG+ Sbjct: 2 LKSAPGRVRELHVQRGRQDDRLQKIHKLAEQHGVTLQWATVKNLDDKV--NARHQGVIAL 59 Query: 118 TAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 + ++ N L +VLD V DPHN+GA LRSA ++ K S Sbjct: 60 CEEGQTHDEAFLLESMEKHGNKALFLVLDGVTDPHNLGACLRSADGAGVHAVVVPKDNSV 119 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + V+ K A GA E +P + ++NLT L+K+ G +G + ++++ + + Sbjct: 120 GLTPVVQKVACGAAESVPLVMVTNLTRTLEKLQQAGAWVVGAAGEAEQFIYDIDLTGPLV 179 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L++GAEGKG+R T++ +A L M G + +LNVS A V L+ Sbjct: 180 LVMGAEGKGIRQLTRKQCDYLAKLPMAGEVSSLNVSVATGVCLFEIVRQR 229 >gi|254419282|ref|ZP_05033006.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas sp. BAL3] gi|196185459|gb|EDX80435.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas sp. BAL3] Length = 294 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 133/240 (55%), Gaps = 3/240 (1%) Query: 31 KKMQSFNQKSRHTSQPENL-FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 ++ +S S+ + FL+G H V AAL NP+R+ L A L H Sbjct: 40 REEPPRAPRSADRSKSDADNFLWGRHPVLAALANPARRGMGRLLATAERAAEIEQGQLAH 99 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNI 147 ++ V Q + +++ AVHQGLA + PL +L+ ++++LD + DP N+ Sbjct: 100 GHKIEVVEVQALTRMLPAGAVHQGLAFKVQPLEGVSLEELAEPAQGVIVMLDQLTDPQNV 159 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RSA+AF GI+ R++P+ + LAK+A GA E +P+ R++NL+ AL+++ G+ Sbjct: 160 GAIFRSALAFGARGIVVQDRHAPALAGALAKAAVGATERLPHARVTNLSRALERLADLGW 219 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + +GL ++ LE+ + L++G+EG G+R E +A + MPG ++LNVSN Sbjct: 220 RAVGLDGTGEQTLEEALDRQPTVLVMGSEGDGIRRLVAEHCDVLAKIPMPGGFESLNVSN 279 >gi|260907208|ref|ZP_05915530.1| tRNA/rRNA methyltransferase (SpoU) [Brevibacterium linens BL2] Length = 296 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 49/295 (16%), Positives = 95/295 (32%), Gaps = 32/295 (10%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR---------- 66 A N + K ++ + G V AL + Sbjct: 2 KLPDAISSPNSKRVKNAVKLLKRHS-RKTMGQFLVEGPQAVREALERHAELGLPGQAPGV 60 Query: 67 ------------KIFQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQ 112 + +L T+ A ++ + + + ++ Sbjct: 61 PDWVGSNADPRGAVIELFITEEAAEAHPEFVETVKDCDIRWNIITDEVLTELSATVNSQG 120 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 +A+ + T + +QL++VL V DP N G I+R A A D ++ T Sbjct: 121 VVAVCERIDVDLTSVIDKEAQLIVVLSQVRDPGNAGTIIRLADAAGADAVVLTSSSVDIY 180 Query: 173 SAVLAKSASGALEHIPYIR------ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + +S +G+L H+P + ++ L A Sbjct: 181 NDKTVRSTAGSLFHVPVVTGVGLAEVTELARARGLQILAADANDQSHDIHHPWDSGLDLT 240 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280 + + G E G+R + E S A + + G ++LN++ AA+V +Y +N Sbjct: 241 ARTTWVFGNEAWGMRTEDLELCDSSAAVPIYGKAESLNLATAASVCIYESARNQR 295 >gi|296284720|ref|ZP_06862718.1| rRNA methylase [Citromicrobium bathyomarinum JL354] Length = 249 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 97/233 (41%), Positives = 138/233 (59%), Gaps = 6/233 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + + + L+G H V AAL NP RK +L AT+ + LD + LP FPV+ Sbjct: 5 RGSGRASTGQVRLWGRHAVEAALLNPERKHRKLWATREGIESLDGE--LPPDFPVEYADT 62 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSA 154 +D++V ++A HQGL LE APL L + + +++LD V DPHN+GAILRSA Sbjct: 63 PDLDRLVARDAPHQGLVLECAPLEERDLAEVIQSGEPGRPIVLLDQVTDPHNVGAILRSA 122 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AF I+T R++P ES V+AKSASGALE +P++R+ NL AL + GF IGL+ Sbjct: 123 AAFDAAAIVTQDRHAPPESGVVAKSASGALETVPWVRVVNLARALDDLAERGFWRIGLAG 182 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +++ L + I +AL+LGAEG GLR ++A L + I++LNVSN Sbjct: 183 EAEMTLAEAIPTGPVALVLGAEGAGLRHNIAGHCDALAKLPISDAIESLNVSN 235 >gi|227432701|ref|ZP_03914673.1| TrmH family tRNA/rRNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351539|gb|EEJ41793.1| TrmH family tRNA/rRNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 249 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 114/243 (46%), Gaps = 11/243 (4%) Query: 48 NLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 F+YG H +L + K++ ++ + ++ P +D++ Sbjct: 7 TEFVYGHHASVESLKSTQEINKVWLQTGLQDKIRNEITQLAKKKKLVIQQAPKSKLDELT 66 Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 HQG+ L A ++D + ++LD + DPHN+G+ILR+A A Sbjct: 67 D-GGNHQGVVLSVAAFEYASIDDLFEQADKKGEAPFFVILDGIEDPHNLGSILRTADAAG 125 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII KR + +A +AK+++GA+EH+P R++NL + ++++ G Sbjct: 126 VHGIIIPKRRAVQLTATVAKTSTGAIEHVPVARVTNLVNIVEELKKRNVWVFGTDMAGDD 185 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + N +ALI+G EG+G+ P ++ M + M G +++LN S AA++ +Y N Sbjct: 186 YRRWD-ANGAVALIIGNEGRGISPLLKKKVDGMVTIPMVGHVQSLNASVAASLLIYQGYN 244 Query: 279 HFA 281 Sbjct: 245 SRN 247 >gi|239617976|ref|YP_002941298.1| RNA methyltransferase, TrmH family, group 3 [Kosmotoga olearia TBF 19.5.1] gi|239506807|gb|ACR80294.1| RNA methyltransferase, TrmH family, group 3 [Kosmotoga olearia TBF 19.5.1] Length = 250 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 59/244 (24%), Positives = 106/244 (43%), Gaps = 14/244 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQ---LLATKNALARLDWDAN---LPHPFPVKTVPPQTIDK 103 +L+G + + L +K+ L + + R + + ++ VPP+ + Sbjct: 2 YLHGRNVLREILKLEPKKLKIKKVLFTDQKNVDRELEELKEHTAKKGYRMEVVPPEKLFN 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + +E HQG+ + +L+ + LL++LD + DPHN+GAI+RS+VA Sbjct: 62 LS-REKKHQGVVINLKEFPYTSLETLLDKIMEKKRSLLVLLDRIQDPHNLGAIIRSSVAA 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I T++ S E S L I + ++ Sbjct: 121 GADGVIITEKASV-EVTPAVVKVSTGLVFRIPIVRVVNMARTIETLKEEGFWTYAATMEG 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +P DK ALI G EGKG+R ++ + + + M I +LNV+ +AA+ L+ + Sbjct: 180 EPYYSVSFTDKAALIFGNEGKGIRHLVKKKSDYLVSIPMCEGIDSLNVAASAAIMLFEYR 239 Query: 278 NHFA 281 +A Sbjct: 240 RQWA 243 >gi|259416208|ref|ZP_05740128.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter sp. TrichCH4B] gi|259347647|gb|EEW59424.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter sp. TrichCH4B] Length = 262 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 91/237 (38%), Positives = 134/237 (56%), Gaps = 7/237 (2%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++L+G+H V AL NP R+ +L+ T NA +L DA + V P+ + Sbjct: 26 TVWLFGLHAVRDALLNPKREKLRLVVTLNAHNKL-EDAITTSGITPEVVDPRKFSVPIDP 84 Query: 108 EAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 +VHQG ALE PL LD +++LD V DPHN+GAILRSA +I Sbjct: 85 GSVHQGAALEVKPLNWGGLDENCIGAEIPRVILLDRVTDPHNVGAILRSAEVLGASAVIG 144 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE- 223 T+ +S E+ LAK+ASGALE PY+R+ NL+D + + G+ +GL ++++ +E+ Sbjct: 145 TRHHSAPETGALAKTASGALERQPYLRMRNLSDTIVALQQMGYLVLGLDGEAEETIEEAV 204 Query: 224 --IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + IAL+LGAEG GLR KT+ET + + +LNVSNAAA++LY + Sbjct: 205 AGRTKEPIALVLGAEGPGLRQKTKETVDKLVKIDAARGFGSLNVSNAAALSLYASLK 261 >gi|291524802|emb|CBK90389.1| rRNA methylases [Eubacterium rectale DSM 17629] Length = 302 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 93/284 (32%), Gaps = 35/284 (12%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ +R + + AL+ + L+ TK+ Sbjct: 19 YARLTENQLLNRANPKEGMFIAESPKVIERALDAGCEPVSLLMETKHVNGEARGIIERCQ 78 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + K+ G L P + R+++ + VL+ V +P N+GA Sbjct: 79 NIPVYTASFDLLTKLTGFALTRGTLCAMYRPKPRSVEEVCRDARRVAVLEDVVNPTNVGA 138 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T S + + G + +P+ S Sbjct: 139 IFRSAAALHMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWAYFPKYNVGSDNTFSDASLH 198 Query: 210 IGLSSDSKKPLEQE-----------------------------------IKNDKIALILG 234 S + ++ +++A++LG Sbjct: 199 DKCDSRDQNCSDRNSSVYKYNIDVLHKLGFKTCAMALTDDSVSIDDPVLNSEERLAIVLG 258 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 EG GL +T ++ + M + +LNV+ A+AVA + Sbjct: 259 TEGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFWELAK 302 >gi|269125514|ref|YP_003298884.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM 43183] gi|268310472|gb|ACY96846.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM 43183] Length = 273 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 105/258 (40%), Gaps = 10/258 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY +++ + ++ G + A+ + +L ++ L L Sbjct: 17 DYTRLRDVQLRKSLEAEHGLFIAEGEKVIRRAVRAGY-PVRSVLTSRRWLEPLSDLLEGV 75 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV + ++ + G LA L + + ++ ++VL+ + D N+G Sbjct: 76 Q-APVYLADERVLEGVAGFPVHRGALAAMARTPLPSVPELIAAARRVLVLEDLVDHGNVG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI R A A D ++ + R + K + GA+ IPY R+ + L + + GF+ Sbjct: 135 AIYRCAAALGVDAVVLSPRCADPLYRRAVKVSMGAVFAIPYARMDDWYHGLGDLRAAGFR 194 Query: 209 TIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPG-----II 260 + L+ D + +++AL+LG+EG GL + + A + M + Sbjct: 195 LLALTPDQSAVPIDKAVPAAGERVALLLGSEGDGLSSRWLKEADEAVCIPMSPDAMDRGV 254 Query: 261 KALNVSNAAAVALYITQN 278 +LNV AA++A Y Sbjct: 255 DSLNVVAAASIACYGLMR 272 >gi|89898599|ref|YP_515709.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56] gi|89331971|dbj|BAE81564.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56] Length = 265 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 40/261 (15%), Positives = 79/261 (30%), Gaps = 9/261 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 +N+ K+ + + L G + AL++ ++ N + Sbjct: 6 KNNPKVKEAVALKLNRS--RKGPLFLLEGFREIQKALSSGYE-CERIFYGTNVTEKERSF 62 Query: 85 ANLPHPFPVKTV-----PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 N P++ V + + + ++++ Sbjct: 63 FNRIQKMPLEKVYCSEETLSRLSYKEHHDNFIAVMKKRWWSRKEFLNQKKNPLPFYLIIE 122 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V P N+GA+LR A DG++ + + +S+ G + +P + Sbjct: 123 QVEKPGNVGALLRIADGVGADGVVLCDPIVDLYNPNVIRSSLGTVFTLPIWSATLEEVLQ 182 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + + E N +AL+ G+E GL S L M G Sbjct: 183 TLSEEKWQVFVTT-PRASSLYFCENYNQPLALVFGSEKDGLTSSWLNGDFSKISLPMLGQ 241 Query: 260 IKALNVSNAAAVALYITQNHF 280 +LN+S A + Y Sbjct: 242 ADSLNLSTAVSAVAYEVIRQR 262 >gi|295102322|emb|CBK99867.1| rRNA methylase, putative, group 3 [Faecalibacterium prausnitzii L2-6] Length = 268 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 70/264 (26%), Positives = 120/264 (45%), Gaps = 15/264 (5%) Query: 31 KKMQSFNQKSRHTSQPENL-FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + M ++ + QP N +YG + V+ L + S LLA A A + + Sbjct: 4 RNMPRRPRREKADDQPRNESLVYGKNPVTELLKSGSGVDTVLLAEGMAPAVAAYYTAMAK 63 Query: 90 --PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDH 140 VK V P + + G E+ HQG+A + + T++ L++ D Sbjct: 64 EAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYATVEDLLAAAKEKGEPPFLVLSDG 122 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DPHN+GA++RSA+ GI+ KR S + + KS++GA E +P R++N+ + ++ Sbjct: 123 IEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLPVARVANIGETIR 182 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-- 258 ++ G L + IAL+LG+EG G+ ++ + L M Sbjct: 183 RLKEQGVFVYCA-DMDGVSLRKNNLTGPIALVLGSEGSGVSQLVKKLCDGVVSLDMTAQG 241 Query: 259 -IIKALNVSNAAAVALYITQNHFA 281 + + NVS AA + LY Q+ A Sbjct: 242 TGVDSFNVSVAAGIILYEIQSQRA 265 >gi|331697623|ref|YP_004333862.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans CB1190] gi|326952312|gb|AEA26009.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans CB1190] Length = 279 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 84/232 (36%), Gaps = 7/232 (3%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVG 106 + G V AL P + + +L T +A R V V + Sbjct: 28 FLVEGAQAVREALAAP-QAVHELFVTTDAAQRHPELVAAARTAGARVVDVTDGAAASLSD 86 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 +A+ + QL+ VL V DP N+G ++R A A D ++ Sbjct: 87 TVTPQGLVAVCDLLDVPLPQALGAAPQLVAVLVGVADPGNVGTVVRCADAAGADAVLLAG 146 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG----FQTIGLSSDSKKPLEQ 222 + ++++G++ H+P R + L + G D P Sbjct: 147 DTVDPHNGKAVRASTGSVFHLPLARDRDAGAVLAACRAAGLVLLAADAHGELDLHDPAAD 206 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++A + G E G+ + A + + G ++LN++ AAA+ LY Sbjct: 207 AVLGGRVAWVFGNEAHGVPDEVLAAADHRVSVPIHGRAESLNLATAAAICLY 258 >gi|153820492|ref|ZP_01973159.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457] gi|126508965|gb|EAZ71559.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457] Length = 229 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 106/232 (45%), Gaps = 15/232 (6%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 A R+ +LL N L RL ++ + + +D + A HQGL Sbjct: 3 RAFVEAYVLKGRQDDRLLPVLNELMRL--------GVSIQEMSRKALDDKA-EGANHQGL 53 Query: 115 ALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 P + A LL+VLD V DPHN+GA LR+A A +I K Sbjct: 54 IARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDK 113 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S +A ++K A GA E +P +R++NL ++ + G +G + ++ + Q Sbjct: 114 SAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATHDIYQSKLTGS 173 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A+++GAEG G+R T+ET + + M G + +LNVS A V L+ Sbjct: 174 LAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQR 225 >gi|58336688|ref|YP_193273.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus NCFM] gi|58254005|gb|AAV42242.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus NCFM] Length = 250 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 113/246 (45%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101 F++G H L + KI ++ + V++VP + Sbjct: 3 SNKDFVFGRHAGLDYLKTQNADKINKVFLQHGIQEDFANQVYALSKKKRLVVQSVPKNKL 62 Query: 102 DKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSA 154 D++V HQGL L + L D L++LD + DPHN+G+ILR+A Sbjct: 63 DRLVD-GGNHQGLVLAISSFDYADLGKMLDKFDEDGKEPFLLMLDSIEDPHNLGSILRTA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A DG+I KR++ ++V+AK+++GA++++P R++NL +++ G+ G Sbjct: 122 DATGVDGVIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWFFGTDM 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E K K LI+G EGKG+ P ++ L M G +++LN S A V LY Sbjct: 182 AGVDYREWNAK-GKTVLIIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLY 240 Query: 275 ITQNHF 280 N Sbjct: 241 QAYNSR 246 >gi|116333232|ref|YP_794759.1| rRNA methylase [Lactobacillus brevis ATCC 367] gi|116098579|gb|ABJ63728.1| rRNA methylase [Lactobacillus brevis ATCC 367] Length = 255 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 73/245 (29%), Positives = 118/245 (48%), Gaps = 11/245 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTV 96 K ++ N F+ G H AAL + K+F K + V Sbjct: 2 KPVENNEENNDFVIGRHPAVAALRSQQTINKVFLQSGLKAEALDEIRQLAKKRHLVISEV 61 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGA 149 P Q +D + + HQG+AL + T+D + + +VLD V DPHN+G+ Sbjct: 62 PKQKLDLLTDHQ-NHQGVALGVSAFAYATIDDLFDRAAAAGEAPFFLVLDGVEDPHNLGS 120 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ILR+A A GII KR + ++V+AK+++GA+E +P R++NL + ++++ G Sbjct: 121 ILRTADASGVHGIIIPKRRAVGLTSVVAKTSTGAIERVPVARVTNLVNTVRELKDRGVWV 180 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + + K ALI+G EGKG+ +ET M + M G +++LN S AA Sbjct: 181 FGTDMAGTDYRDWDAK-GASALIIGNEGKGISRLLKETVDQMLTIPMVGEVQSLNASVAA 239 Query: 270 AVALY 274 + +Y Sbjct: 240 GLLMY 244 >gi|160894110|ref|ZP_02074888.1| hypothetical protein CLOL250_01664 [Clostridium sp. L2-50] gi|156864143|gb|EDO57574.1| hypothetical protein CLOL250_01664 [Clostridium sp. L2-50] Length = 287 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 9/247 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + + AL+ + LA K LA + + P+ P + + Sbjct: 40 YEPEEGLFITESPKVIERALDGGYEPV-SFLAEKGQLAEAEEILDRMEDVPIYVAPDEIL 98 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K+ G L + + ++ + +L+ V +P N+GA+ R A A D Sbjct: 99 TKLTGYHLTRGLWCTMRRRTLPTIEEVCQGAKRIAILEEVVNPTNVGALFRCAAALGMDA 158 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYI--------RISNLTDALQKMHSWGFQTIGLS 213 +I T S ++ + G + IP+ L++M Sbjct: 159 VILTGGCSDPLYRRASRVSMGTVFQIPWTMLSKKDGVWPEQAMKTLKEMGFKTAAMALRE 218 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 Q +K+A++LG EG GL T + M + +LNV+ A AVA Sbjct: 219 DSVGIDDPQLNSEEKLAIVLGTEGDGLAGDTIADCDYTVMIPMAHGVDSLNVAAAGAVAF 278 Query: 274 YITQNHF 280 + + Sbjct: 279 WQLGHQR 285 >gi|184200893|ref|YP_001855100.1| RNA methyltransferase [Kocuria rhizophila DC2201] gi|183581123|dbj|BAG29594.1| RNA methyltransferase [Kocuria rhizophila DC2201] Length = 275 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 64/279 (22%), Positives = 116/279 (41%), Gaps = 11/279 (3%) Query: 4 ISKKK--SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 ++ SE+I L D ++ DY + + + + + + AL Sbjct: 1 MTSPAPLSERIVELSDPADPRV----ADYTSLTDVSLRRKLEPERGLYLAESSKVLRRAL 56 Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 + R + L L D + PV + +++I G +A P Sbjct: 57 DAGHRP-RSFFMAEKWLDGL-RDVLEAYDVPVYVGADEVLEQITGFHLHRGAMAAMHRPE 114 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 P + +++ + +L+ + D N+GAI RSA A D ++ T R + + + Sbjct: 115 PLPLESVLASARRVAILEDIVDHTNVGAIFRSAAALDVDAVLVTPRCADPLYRRAVRVSM 174 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGK 238 G + +P++R+ + T LQ++ GF T L+ +K+ALILG EG+ Sbjct: 175 GTVFQVPWVRLEHWTADLQRVKDAGFLTAALALSDDAVTVDALAAEAPEKLALILGTEGQ 234 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 GL T A + M + +LNV+ A+AVA + T+ Sbjct: 235 GLGAATLHHADRHVIIPMSHGVDSLNVAAASAVAFWETR 273 >gi|302561591|ref|ZP_07313933.1| rRNA methyltransferase [Streptomyces griseoflavus Tu4000] gi|302479209|gb|EFL42302.1| rRNA methyltransferase [Streptomyces griseoflavus Tu4000] Length = 296 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 51/286 (17%), Positives = 97/286 (33%), Gaps = 11/286 (3%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65 + K+ + + + +++ + G V A + S Sbjct: 2 SRALPKVKKMASVSPELISPRSSRVAAARRLGKRN-FRGKERLFLAEGPQAVREAAAHRS 60 Query: 66 R---KIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +L AT +A R V I I + + Sbjct: 61 AGAATLVELFATVDAAERYADIVGAARDAGARVHLASEDVIADISTTVTPQGLVGVCRFL 120 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 +L+ VL HV DP N G +LR A A + ++ T + +++ Sbjct: 121 DTPFEEILAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRAS 180 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAE 236 G+L H+P + A+ + G + + + L+ E A + G E Sbjct: 181 VGSLFHLPVAVGVPVGQAVTGLRDAGVRLLAADGAGDRDLDDELDKGTMGGPTAWVFGNE 240 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HFA 281 GL +T+ ++ + + G ++LN++ AAAV LY + A Sbjct: 241 AWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLYASARAQRA 286 >gi|320009403|gb|ADW04253.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces flavogriseus ATCC 33331] Length = 318 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 104/246 (42%), Gaps = 13/246 (5%) Query: 48 NLFLYGVHTVSAALNNPS---RKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDK 103 + + G + V AL + Q + R + P +D+ Sbjct: 74 SEMVVGRNPVFEALRDGVPATTLYVQQYIDNDERVREALQLAGERGNINLMEAPRPELDR 133 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQGL L+ P + L++ LD V DP N+GAI+RS A Sbjct: 134 MTNGL-NHQGLVLQVPPYEYAHPEDLTSAAYDNNEDPLIVALDGVTDPRNLGAIVRSVSA 192 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F G++ +R + +A KS++G P R++NLT AL+ G +GL++D Sbjct: 193 FGGHGVVVPERRAAGMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADG 252 Query: 217 KKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + +E E + +++G+EGKGL ET + MPG ++LN AA + LY Sbjct: 253 EHTVEDLEALAGPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYE 312 Query: 276 TQNHFA 281 A Sbjct: 313 VARRRA 318 >gi|221632836|ref|YP_002522058.1| putative 23S rRNA methyltransferase tsnR [Thermomicrobium roseum DSM 5159] gi|221156608|gb|ACM05735.1| possible 23S rRNA methyltransferase tsnR [Thermomicrobium roseum DSM 5159] Length = 271 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 91/259 (35%), Gaps = 7/259 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R+H K +S + R + + G T++ A+ R Sbjct: 7 SRHHPLVKFARSLRE-RRVRERERAFLVEGPKTIADAVQAGYRPSHLFYVPTRLDPLEQK 65 Query: 84 DANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + V + + +I +A+ P + L +++D + Sbjct: 66 VVARAQAVGTRIIAVTERVLHEIAETMTPQAVVAVFPIPSIPFRL-PTAEPLFALIVDRL 124 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G +LRSA+ ++ T + + ++A+GA H+P + + + Sbjct: 125 QDPGNLGTLLRSALGAGVHAVLLTPGTVDPFNPKVVRAAAGAHFHLPIATLDPVAIQREF 184 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + + ++ A+++G+E G+ + A + + G ++ Sbjct: 185 PGLEI---VVARPQALRAYDERDWTRASAVVIGSEAHGISAELARLAADEVRIPLRGGVE 241 Query: 262 ALNVSNAAAVALYITQNHF 280 +LN A ++ L+ Sbjct: 242 SLNAGVAGSIILFEAARQR 260 >gi|111115344|ref|YP_709962.1| rRNA methylase [Borrelia afzelii PKo] gi|110890618|gb|ABH01786.1| rRNA methylase [Borrelia afzelii PKo] Length = 246 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 116/240 (48%), Gaps = 15/240 (6%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 +++ ++ N ++ K++ + + + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG-FELYISKKSSKTKEIEKLAKTQNIKITKISINELDKIL-KNKDHRGF 64 Query: 115 ALETAPLLSPTLDAV-------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AL+ + + + + +++LD + DP N GAILR+A FS D Sbjct: 65 ALKLKVEKNKNVKTQTKDFENLLETFKKKENVFILLLDEIEDPQNFGAILRTAEQFSIDL 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +ITT+++S +++ + +++SGA +++ I ++N+ + + + GF + + Sbjct: 125 VITTQKHSAKDNSTVLRTSSGASQYVKKITVTNINNTINFLKKHGFWIYTGDIKGQDINK 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +I + KIALILG EGKG+ T++ + + + G I +LNVS +A + ++ + Sbjct: 185 IKINDKKIALILGNEGKGVHKLTKQNSDFLIRIPTSGKIDSLNVSVSAGILIFEIKRQLN 244 >gi|54023885|ref|YP_118127.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] gi|54015393|dbj|BAD56763.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] Length = 279 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 49/260 (18%), Positives = 97/260 (37%), Gaps = 7/260 (2%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 L + + ++ H + G + V+AAL+ ++ +L + A R Sbjct: 14 LSERNPRVVSAVKLH-RAAHRRRTGLFLAEGANAVTAALDTG--RVRELFYSAAAAEREH 70 Query: 83 WDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 V + + + +A+ + R+ +LL V Sbjct: 71 ELVATAAATGVRTTLVSDRAAEHLGETVTAPGLVAVCEQIDVPLPEVLARDPRLLAVPVE 130 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + +P N G ++R A A DG++ + ++++G+L H+P +R + L Sbjct: 131 IAEPGNAGTLIRVADAVGADGVVLAGHTVDPHNGKCVRASAGSLFHVPVVRGREVVPTLD 190 Query: 201 KMHSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 +H+ G + EI +A + G E GL P A + + G Sbjct: 191 ALHAAGLTLLATAADGEVVLDEADEILAGPVAWLFGNEAHGLDPAVAARADHRVRIPIHG 250 Query: 259 IIKALNVSNAAAVALYITQN 278 ++LN++ AAA+ LY + Sbjct: 251 RAESLNLAAAAAICLYASAR 270 >gi|299143999|ref|ZP_07037079.1| 23S rRNA methyltransferase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518484|gb|EFI42223.1| 23S rRNA methyltransferase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 260 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 98/256 (38%), Gaps = 5/256 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ +K ++S K + + + F+ G+ + AL + T N D Sbjct: 9 SKDNKSFKYLKSLLNK-KQRTLDKIFFVEGIKVLEEALKYKIPMYIAVSDTFNKSIVTDL 67 Query: 84 DAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + + ++ E +A ++ + LD + Sbjct: 68 ILKYQLNNVVIYYFKNTIFKQLTDTENSQGIIAYFKHIHINGINEIENGKY--AFLDDLQ 125 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ++RSA AFS DGII + + ++ A + I + + K+ Sbjct: 126 DPGNVGGLIRSADAFSLDGIIL-SKNTVELYNPKLIRSTMASVFRVKLYIVESKNEILKL 184 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF+ I S ++ K + ++ + G E KG+ + + ++ M I + Sbjct: 185 KEKGFKIISTSVENAKASYEYKFSENSVITFGNEAKGVSDEVFSYSDEKIYIPMSEEINS 244 Query: 263 LNVSNAAAVALYITQN 278 LNV+ AA++ Y Sbjct: 245 LNVNVAASILFYEMNR 260 >gi|116074617|ref|ZP_01471878.1| hypothetical protein RS9916_28824 [Synechococcus sp. RS9916] gi|116067839|gb|EAU73592.1| hypothetical protein RS9916_28824 [Synechococcus sp. RS9916] Length = 548 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 117/240 (48%), Gaps = 13/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL--ARLDWDANLPH--PFPVKTVPPQTIDKIVG 106 L+G H AAL R I ++ T + V+ V + ++ G Sbjct: 232 LWGRHATQAALEAG-RPIHRIWCTSELRSSPKFLQLLREAKSSGVLVEEVTWARLGQLTG 290 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSC 159 AVHQG+AL+TA + L + LL+ LD + DPHN+GAI+RSA A Sbjct: 291 -GAVHQGIALQTASADTLDLPTLVEGCAALGEPPLLLALDGLTDPHNLGAIVRSAEALGA 349 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G++ +R S + +AK A+GALEH+P R+ NL +L+ + G++ +GL+ + Sbjct: 350 HGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLKDAGYRVVGLAGEGDVT 409 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L + +A++ G+EG+GL T+ + + + G+ +LN S A A+ LY Sbjct: 410 LAEADLEGPLAIVTGSEGQGLSLLTRRHCDQLIRIPLRGVTPSLNASVATAMCLYEVARR 469 >gi|77918299|ref|YP_356114.1| rRNA methyltranferase [Pelobacter carbinolicus DSM 2380] gi|77544382|gb|ABA87944.1| rRNA methyltransferase [Pelobacter carbinolicus DSM 2380] Length = 246 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 113/241 (46%), Gaps = 12/241 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIVG 106 +YGV+ V AL + RK +LL A + +A ++++ + +D + Sbjct: 4 LIYGVNPVLEALKSRQRKPLELLVLHGAESSRLSAVCEAARARRVAIRSLDRRELDALA- 62 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSC 159 + A HQG+AL L+ + + +++VLD + DPHN+GA+ RSA A C Sbjct: 63 EGARHQGVALRLESQSVIALEDLLDLWRNAGGKGVILVLDGITDPHNLGALARSAEAVGC 122 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKK 218 GI+ K S +A K+++GAL ++P R++N+ + + + + Sbjct: 123 QGIVLPKDRSCPITAAAEKASAGALAYLPVCRVTNVARSLEVFKQAGFWVYGLAGDAGSQ 182 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L + L++G EGKGLR ++ ++ + M G + +LN S A VAL+ Sbjct: 183 SLYDTDLRGNVVLVVGGEGKGLRDNVRKHCDALLAIPMRGQVSSLNASVAGGVALFEVLR 242 Query: 279 H 279 Sbjct: 243 Q 243 >gi|323360047|ref|YP_004226443.1| rRNA methylase [Microbacterium testaceum StLB037] gi|323276418|dbj|BAJ76563.1| rRNA methylase [Microbacterium testaceum StLB037] Length = 268 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 109/256 (42%), Gaps = 6/256 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY+ + + + + AL R +L + LA D A + Sbjct: 15 ADYRDLTDVSLRRVTEPAGGLYIAESSKVLDRALRAGHRP-RSVLVQEKFLA--DALALV 71 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + VP + +++ G LA P+L+ D V ++L++VL+ + D NI Sbjct: 72 GEDAEIYVVPAEIAERVTGYTVHRGLLASMHRPVLASVEDVVEGARLVVVLEDIVDHTNI 131 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA RSA A D ++ T R + + + G + +P+ R+ ++A +H+ G Sbjct: 132 GAAFRSAAALGADAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRLPEWSEAKPLLHAAGL 191 Query: 208 QTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L+ ++++AL++GAEG GL A ++ + M G + +LN Sbjct: 192 HLAALALSDDAVTLDAFSAVGHERVALLMGAEGDGLSRGALAAADTVVTIPMAGGVDSLN 251 Query: 265 VSNAAAVALYITQNHF 280 V+ A+AVAL+ Sbjct: 252 VAAASAVALWELGRGR 267 >gi|224498913|ref|ZP_03667262.1| hypothetical protein LmonF1_04098 [Listeria monocytogenes Finland 1988] gi|255028569|ref|ZP_05300520.1| hypothetical protein LmonL_04051 [Listeria monocytogenes LO28] Length = 221 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 57/203 (28%), Positives = 100/203 (49%), Gaps = 9/203 (4%) Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMV 137 V+ VP Q I+K+V HQG+A + A LD ++ Sbjct: 16 LAKERKIQVQFVPKQKIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFII 73 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD + DPHN+G+I+R+A + GII KR S + +AK+++GA+E++P +R++N+ Sbjct: 74 LDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVR 133 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 ++++ G G + + +A+++G+EG G+ +E + HL M Sbjct: 134 TMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMR 193 Query: 258 GIIKALNVSNAAAVALYITQNHF 280 G + +LN S AA++ LY Sbjct: 194 GKVTSLNASVAASLLLYEVYRKR 216 >gi|217976553|ref|YP_002360700.1| RNA methyltransferase, TrmH family, group 3 [Methylocella silvestris BL2] gi|217501929|gb|ACK49338.1| RNA methyltransferase, TrmH family, group 3 [Methylocella silvestris BL2] Length = 293 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 90/219 (41%), Positives = 129/219 (58%), Gaps = 2/219 (0%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 LYG H V AL RK+F + AT+ A +L + + V + + + +G A Sbjct: 61 VLYGFHAVREALRAGKRKMFDIYATEAAAQKLAPEIAAA-GLTARLVAAEDLSRRLGPAA 119 Query: 110 VHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 VHQG+ LE P + + D S +++VLD + DPHN+GAI R+A AF D ++ T+R+ Sbjct: 120 VHQGVMLEARPFEALDISDIAPESGVVLVLDQITDPHNVGAIARTAAAFRVDALVMTERH 179 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 +P + VLAK+ASG LEH+P I + NL AL+ + G+ +GL S+ + L + Sbjct: 180 APELTGVLAKAASGGLEHVPIIHVVNLARALRALKDQGYLRVGLDSEGESTLTDAPLSRP 239 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +ALILG EGKGLR T+E +A L MPG IK+LNVSN Sbjct: 240 LALILGGEGKGLRRLTRENCDLVARLDMPGPIKSLNVSN 278 >gi|93004896|ref|YP_579333.1| RNA methyltransferase TrmH, group 3 [Psychrobacter cryohalolentis K5] gi|92392574|gb|ABE73849.1| RNA methyltransferase TrmH, group 3 [Psychrobacter cryohalolentis K5] Length = 256 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 111/244 (45%), Gaps = 15/244 (6%) Query: 52 YGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 YG+H + A L L + ++ + + ++ + ++ G Sbjct: 8 YGIHAIDALLEYRPLDGLSLFVQQGRETDSHVQSIMAQARDNGISIQPTQKDKLTQLCGS 67 Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ L PL A R+ LL+VLD + D HN GA LR+AVA D + Sbjct: 68 P-QHQGVVLNARPLGFADEGLLDTLAGRDDCLLLVLDQITDAHNFGACLRTAVAMGVDAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLE 221 I K ++ S + +AK + GA E +P + ++NL + ++ F + + KP+ Sbjct: 127 ICPKHHAASLTPTVAKVSVGAAEMMPIVSVTNLARTLTKIKNAGVFVFGTALNANAKPIH 186 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM----PGIIKALNVSNAAAVALYITQ 277 K A+I+G+EG+G+R T E+ + ++ M G +++LNVS A +ALY Sbjct: 187 AADLTGKTAIIMGSEGEGMRRLTTESCDELVYIPMSGNEHGNLQSLNVSVATGMALYEIN 246 Query: 278 NHFA 281 Sbjct: 247 RQRT 250 >gi|282860521|ref|ZP_06269587.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces sp. ACTE] gi|282564257|gb|EFB69793.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces sp. ACTE] Length = 318 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 69/280 (24%), Positives = 114/280 (40%), Gaps = 13/280 (4%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS---RKIFQ 70 S + H N + + R ++ + + G + V AL + Q Sbjct: 40 SARKGHKKNRVANAQARQAAARRPAPRRGGAKGTSEMVVGRNPVYEALRDGVPATTLYVQ 99 Query: 71 LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128 + R + P +D++ HQGL L+ P + Sbjct: 100 QYIDNDERVRECLQLAGERGNINLMEAPRPELDRMTKGL-NHQGLVLQVPPYEYAHPEDL 158 Query: 129 ------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L++ LD V DP N+GAI+RS AF G++ +R + +A KS++G Sbjct: 159 TAAAYDNDEEPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAG 218 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241 P R++NLT AL+ G +GL++D + +E E + + +++G+EGKGL Sbjct: 219 TAARTPVSRVTNLTRALEGYQKAGLTVVGLAADGEHTVEDLEQLSGPVVIVIGSEGKGLG 278 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ET + MPG ++LN AA + LY A Sbjct: 279 RLVGETCDYRVRISMPGGAESLNAGVAAGIVLYEVARRRA 318 >gi|325474012|gb|EGC77200.1| RNA methyltransferase [Treponema denticola F0402] Length = 258 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 61/252 (24%), Positives = 108/252 (42%), Gaps = 24/252 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQ----------LLATKNALARLDWDANLPHPFPVKTVPPQ 99 + G H + L KI + + + + +A ++ Q Sbjct: 4 IITGFHAIDEILRAEKLKIEKEKNRKPSLEIFYSKEGPRVKKILEAARKLNLKIEKQDNQ 63 Query: 100 TIDKIVG----KEAVHQGL---------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 +D I + H+G+ + A ++S +++LD V DPHN Sbjct: 64 FLDSITKTLPEQLRDHRGIVLVTEAENQKKGMSIDEFFAKLAEKDSGFVVILDSVTDPHN 123 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 G+I+RSA F DGII + S +++K ++GAL +P++ ++NL ++++ G Sbjct: 124 TGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAWVPFVEVTNLVRTVERLKKEG 183 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 F G + K L K LI+G+EG+G+ +ET + + G + +LNVS Sbjct: 184 FWIYGADAV-GKALPDLTFPKKTVLIMGSEGRGMSRLVEETCDEIVSIPTKGKLDSLNVS 242 Query: 267 NAAAVALYITQN 278 AA + LY Sbjct: 243 VAAGILLYEISR 254 >gi|172040800|ref|YP_001800514.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] gi|171852104|emb|CAQ05080.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] Length = 269 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 104/265 (39%), Gaps = 15/265 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + ++ + G + V+AAL ++ L T+ A R + ++ Sbjct: 9 PRIVNAAKLH-RAATRRKTGRFLAEGENAVTAALARG--EVLDLYVTEAAWERFPFLQDV 65 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL---DAVRNSQLLMVLDHVNDP 144 V + + D + AL ++ AV+NS L+ V N+P Sbjct: 66 TS-THVHLITERAADHLSETVTHTGLFALCANQMVDDDALIASAVKNSPLIAVPVETNEP 124 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N G I+R A AF G++ + ++++G+L ++P R +++ + ++K+H Sbjct: 125 GNAGTIIRVADAFGAGGVLFAGNTVDPQGGKAVRASAGSLFNLPVARNTSVVEVVEKLHE 184 Query: 205 WGFQ------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 FQ ++ + A + G E GL + A + M G Sbjct: 185 AEFQILATAADGDVNLHEAADPANGMLAQPTAWLFGNEAHGLGD-WLDLADIRVSIPMQG 243 Query: 259 IIKALNVSNAAAVALYITQN-HFAK 282 ++LN++ AA+V LY + AK Sbjct: 244 QAESLNLATAASVCLYESSKAQIAK 268 >gi|323359184|ref|YP_004225580.1| rRNA methylase [Microbacterium testaceum StLB037] gi|323275555|dbj|BAJ75700.1| rRNA methylase [Microbacterium testaceum StLB037] Length = 332 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 70/277 (25%), Positives = 122/277 (44%), Gaps = 11/277 (3%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKI 68 K + ++ + A + + + S + + + + + G ++V AL P+ Sbjct: 49 KRKAAEERYAAAGGKGRPGVRAVGSNSNRKSPKASDDTETVTGRNSVLEALRAKIPATAF 108 Query: 69 FQ-LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-- 125 + + + PV V +D++ G + VHQG+AL+ P Sbjct: 109 YIAQRVEMDDRVKEMLSIATNRGIPVLEVTRPELDRMAGFDGVHQGVALKVPPYTYAHPQ 168 Query: 126 -----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + LL+ LD V DP N+GAI+RS AF G+I +R S S ++ K++ Sbjct: 169 DLLEQIIDRGEVPLLVALDGVTDPRNLGAIIRSTGAFGGQGLILPQRRSASVNSAAWKTS 228 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKG 239 +GA IP +NLT L++ G +GL+ D L + + +++G+EGKG Sbjct: 229 AGAAARIPVALAANLTATLKEFKKQGVFVLGLAGDGDVSLPALELADRPVVIVVGSEGKG 288 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L ET + + + ++LN AA+VALY Sbjct: 289 LSRLVTETCDQVVSIPISTATESLNAGIAASVALYQV 325 >gi|87124232|ref|ZP_01080081.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Synechococcus sp. RS9917] gi|86167804|gb|EAQ69062.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Synechococcus sp. RS9917] Length = 504 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 73/241 (30%), Positives = 116/241 (48%), Gaps = 13/241 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARL----DWDANLPHPFPVKTVPPQTIDKIV 105 L+G H AAL R I ++ T + + V+ V + +I Sbjct: 182 LLWGRHATQAALEAG-RPIHRIWCTSDMRSAPRFLGLLREAKASGVLVEEVTWARLGQIT 240 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFS 158 G AVHQG+AL+TA + L + LL+ LD + DPHN+GAI+RSA A Sbjct: 241 G-GAVHQGIALQTAAAETLDLPTLIEGCASLGEPPLLLALDGLTDPHNLGAIVRSAEALG 299 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++ +R S + +AK A+GALEH+P R+ NL +L+ + G++ +GL+ + Sbjct: 300 AHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLESLKDAGYRVVGLAEEGDL 359 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L + + ++ G+EG GL T+ + + + GI +LN S A A+ LY Sbjct: 360 TLAEADLEGPLVVVTGSEGDGLSLLTRRHCDQLIRIPLRGITPSLNASVATALCLYEVAR 419 Query: 279 H 279 Sbjct: 420 R 420 >gi|295425603|ref|ZP_06818290.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664] gi|295064619|gb|EFG55540.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664] Length = 251 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 13/247 (5%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101 + F++G H L + +I ++ V+T P + Sbjct: 4 NDKDFVFGRHAGLDFLKTQSADRINKVFLQHGVQEDFANQVYALAKKKRLVVQTAPKNKL 63 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSA 154 D++V HQGL L + LD V L++LD + DPHN+G+ILRSA Sbjct: 64 DRLVA-GGNHQGLVLAVSSFEYADLDQLLDEFDQVGKEPFLLMLDSIEDPHNLGSILRSA 122 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A D II KR++ ++V+AK+++GA++++P R++NL + + G+ G Sbjct: 123 DATGVDAIIIPKRHASGLTSVVAKTSTGAIDYVPVARVNNLVQTTKNLKKRGYWIFGTDM 182 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + N K L++G EGKG+ P ++ L M G +++LN S A + LY Sbjct: 183 KGTDYRQWN-ANGKTVLVIGNEGKGIAPLLKKQMDQTLTLPMVGHVQSLNASVATGILLY 241 Query: 275 ITQNHFA 281 N Sbjct: 242 QMLNSRN 248 >gi|291008734|ref|ZP_06566707.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea NRRL 2338] Length = 253 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 102/240 (42%), Gaps = 8/240 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +YG V AAL++ ++ +++ + A+ +A V+ + + G Sbjct: 14 VYGRKPVLAALSDYDLRVDKVIIAEGLGGAVISEIKEAAADRAVRVQRASAHRVKVLAGN 73 Query: 108 EAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 QG+ + L D + +++LD + P N+G ILR+A A DGI Sbjct: 74 GRHDQGVLADVVARKMRPLADALEDPATAPRNVLLLDGLTTPANVGMILRTATAAGIDGI 133 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + R S ++ K+++G H P +R A + + G+ L + +++ + + Sbjct: 134 VVPHRGVASLDPLVIKASAGVAFHAPVLRAQTAGHAAELLTEAGYPLYALEAGAQESIYE 193 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + +LG+E GL Q + M G +++LNV++AAAV + K Sbjct: 194 ADFGSRAVFVLGSETAGLSEDVQTRIAQSVAIPMRGGVESLNVASAAAVLCFELLRRTGK 253 >gi|219670018|ref|YP_002460453.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense DCB-2] gi|219540278|gb|ACL22017.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense DCB-2] Length = 275 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 92/256 (35%), Gaps = 8/256 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + ++ ++R + + AL+ I L+ K + Sbjct: 18 FARLTETQLRNRLEPEMGIFIAESTKVIGLALDAGCEPISLLMERKYIAGQARGIITRCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + G + L P L + ++ + VL+ + D N+GA Sbjct: 78 DIPVYTADRNLLAGLTGFQLTRGVLCAMRRPHLPSVEEVCADASRVAVLEGIADSTNMGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY--------IRISNLTDALQK 201 I RSA A D ++ T + + G + +P+ L+K Sbjct: 138 IFRSAAALGIDAVLLTPSCCDPLCRRGVRVSMGTIFQVPWARIGSELSQWPQQGMKILRK 197 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + Q + +K+A++LG+EG GL P T A + M + Sbjct: 198 LGFKTVAMALNDKAVSIDDSQLMAEEKLAIVLGSEGNGLAPGTIADCDYTACIPMSHNVD 257 Query: 262 ALNVSNAAAVALYITQ 277 +LNV+ A+AVA + + Sbjct: 258 SLNVAAASAVAFWQLR 273 >gi|240168029|ref|ZP_04746688.1| putative 23S rRNA methyltransferase [Mycobacterium kansasii ATCC 12478] Length = 261 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 94/241 (39%), Gaps = 5/241 (2%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + G + V AA + + ++ T+ A R + H PV V + Sbjct: 21 RRRANRFLAEGPNLVEAA--SARGLVREVFVTEVAAQRHETWLA-GHDAPVHLVTERAAK 77 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A+ P R+ +L+ +++P N G ++R A A + Sbjct: 78 ALSDTVTPAGLVAVCDIPTTRLDDVLTRSPRLIATAVEISEPGNAGTLIRIADAMGAAAV 137 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + ++++G++ +IP + +++ A+ + G Q + + D + L+ Sbjct: 138 ILAGHSVDPYNGKCLRASAGSIFNIPVVAVADTHAAIVSLRGAGLQVLATAVDGETSLDD 197 Query: 223 EI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + G E GL + A + M G ++LN++ AAA+ LY + Sbjct: 198 ADPLLGVATAWLFGPESHGLSAEIAGAADHRVRIPMSGRAESLNIAAAAAICLYQSARAL 257 Query: 281 A 281 + Sbjct: 258 S 258 >gi|152992314|ref|YP_001358035.1| RNA methyltransferase [Sulfurovum sp. NBC37-1] gi|151424175|dbj|BAF71678.1| RNA methyltransferase, TrmA family [Sulfurovum sp. NBC37-1] Length = 263 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 58/253 (22%), Positives = 112/253 (44%), Gaps = 12/253 (4%) Query: 34 QSFNQKSRHTSQPENLF-----LYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWD 84 Q F+Q S + + F +YG + V AL +P I +L +K+ Sbjct: 10 QRFHQDSDEYLKKKAFFDKVLTIYGRNAVLEALEDPDITIHKLHLSKSNKDAPVLEQMKK 69 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET---APLLSPTLDAVRNSQLLMVLDHV 141 V+ ++ +I QG+AL+ + + ++ LD V Sbjct: 70 IASKRGIEVQYHDKASLSRISKNAKQDQGVALDIVLEHFGDEKDFISKNINYRIIALDGV 129 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 +P N+G I+RS A + D I+ + + S ++ K++ G L + I+ SNL + L+ Sbjct: 130 TNPQNLGMIIRSCAAGNIDAILLPTKGAAQISPLVIKASVGTLFKMSIIKTSNLKETLKH 189 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G LSS + K +++I ++K +LG E +G+ P ++ + + M ++ Sbjct: 190 FRKEGASLYTLSSHADKSYKEQIYSEKTIFVLGNESEGVSPAVEKLCNASIAIPMQRGVE 249 Query: 262 ALNVSNAAAVALY 274 +LNV+ A++ + Sbjct: 250 SLNVAVTASLLAF 262 >gi|257453526|ref|ZP_05618816.1| RNA methyltransferase, TrmH family, group 3 [Enhydrobacter aerosaccus SK60] gi|257448984|gb|EEV23937.1| RNA methyltransferase, TrmH family, group 3 [Enhydrobacter aerosaccus SK60] Length = 258 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 19/250 (7%) Query: 52 YGVHTVSAALNNPSRKIFQLLATK-----NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 YG+H V + L + L +A + + ++ + K+ Sbjct: 8 YGIHAVQSILQHRGIDGLTLFIQDGKKQDDATVANITELAQTYGIAIQISAKDKLTKLAE 67 Query: 107 KEAVHQGLALETAPLLSPTLD---------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + L D R LL+VLD + DP+N+GA LR+AVA Sbjct: 68 SPQHQGVVLQARPAELQDEADLKYLVDKHQTERKPLLLLVLDQITDPNNLGACLRTAVAM 127 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +I K +S S + +AK A GA+E +P+I+++NL L + G G + D Sbjct: 128 GVSAVIIPKNHSSSITPAVAKVAVGAVELMPFIQVTNLARTLTDIKKQGVFVFGTALDDT 187 Query: 218 KPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALNVSNAAAVA 272 Q+ +A+++G+EG G+R T +T + ++ MPG I++LNVS A + Sbjct: 188 AKPVQDCDLTGDVAIVMGSEGDGIRRLTADTCDQLVYIPMPGNEHGQIQSLNVSVATGMV 247 Query: 273 LYITQNHFAK 282 LY K Sbjct: 248 LYEASRQRFK 257 >gi|225390226|ref|ZP_03759950.1| hypothetical protein CLOSTASPAR_03976 [Clostridium asparagiforme DSM 15981] gi|225043714|gb|EEG53960.1| hypothetical protein CLOSTASPAR_03976 [Clostridium asparagiforme DSM 15981] Length = 275 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 55/253 (21%), Positives = 93/253 (36%), Gaps = 6/253 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y + +RH + + AL+ I LL + + + Sbjct: 18 YARYSEVQLLNRHEPEKGVFIAESPKVIGRALDAGCVPISLLLERAHVEGQGKEIISRCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + K+ G + L P L R ++ + VL++V +P NIGA Sbjct: 78 EIPVYTAEFDVLTKLTGFKLTRGMLCAMYRPKLPAVEAVCRGARRIAVLENVMNPTNIGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH------ 203 I RSA A + D ++ T S + + G + +P+ + M Sbjct: 138 IFRSAAALNMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWTFLEGTEWPQHGMELLSGLG 197 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + D++ALILG EG GL +T + M + +L Sbjct: 198 FKTAAMALSDESVRIDDPRLMAEDRLALILGTEGDGLAEETIADCDYTVRIPMAHGVDSL 257 Query: 264 NVSNAAAVALYIT 276 NV+ A+AVA + Sbjct: 258 NVAAASAVAFWQL 270 >gi|255536170|ref|YP_003096541.1| putative rRNA methylase [Flavobacteriaceae bacterium 3519-10] gi|255342366|gb|ACU08479.1| putative rRNA methylase [Flavobacteriaceae bacterium 3519-10] Length = 257 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 96/277 (34%), Gaps = 26/277 (9%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 +I ++EKI K + +R + + G A Sbjct: 1 MIESLQNEKI------------------KHLTRLLTDNRFRKKSGTFAVEGKQENERARK 42 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 + L +D + P + V + +K+ + + + + Sbjct: 43 FGYEPVEYFL------CESIFDEDFPAG-KISLVSEKVYEKVAYRGSSEGIIGIYNTKSF 95 Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + A++ +++++ V P N+GA+LRS AF D +I T + + +S+ G Sbjct: 96 NLNAFAIKEDSSVIIIESVEKPGNLGAVLRSCEAFGIDALIITDPKVDFYNPNVIRSSVG 155 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 L + + N + SD + + + AL+ G E GL Sbjct: 156 CLFGMDIFQSENNALLDFLESNHFKIFTTRMSDDATDIFNQDFGGRSALVFGTEHSGLSD 215 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 T+ + M G I +LN+SNA AV+ Y Sbjct: 216 FWIGKGTNTL-VPMTGSIDSLNLSNAVAVSGYEILRQ 251 >gi|77414383|ref|ZP_00790538.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 515] gi|77159573|gb|EAO70729.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 515] Length = 229 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 99/236 (41%), Gaps = 12/236 (5%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + ++ + G H A ++ + + T+ A+ RL P V Sbjct: 3 QKKYRKSS--YLIEGWHLFEEAEKYGAQFLN-IFVTETAIDRLR------KPEEAIVVTD 53 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + ++ + QG+ E A + D + L++ + V DP N+G ++R+A A + Sbjct: 54 DVLKELTDSQ-TPQGIVAEIAFQETRWTDIKKGRFLVL--EDVQDPGNLGTMVRTADAAN 110 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D + +++ + + +S G+ H+P R+ S+ Sbjct: 111 FDAVFLSQKSADLYNQKTLRSMQGSHFHLPVFRVEIEQFVNFCKAEGITMIATTLSEQSV 170 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K D ALI+G EG+G+ E A +AH+ MPG ++LNV+ AA V ++ Sbjct: 171 NYKNLPKYDHFALIMGNEGQGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIF 226 >gi|257066829|ref|YP_003153085.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM 20548] gi|256798709|gb|ACV29364.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM 20548] Length = 241 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 97/250 (38%), Gaps = 18/250 (7%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + + +K ++ K ++ + + + A+ + + I L + Sbjct: 5 SQANPKFKLIKKLRNK-KYRDKEGLFVIESRKLIEEAIKSNAD-IDFLFLREG------- 55 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + P V + + + + G A + L + R +++LDH++D Sbjct: 56 -ISFEGNIP-YLVFDENLFAKLSELKSPDGYAAVIRKKEACDLKSDR----ILLLDHISD 109 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+RSA AF II TK + +++ G++ + +S K + Sbjct: 110 PGNMGTIIRSAEAFGFSDIILTKGCVDIYNEKCLRASMGSVFRENIVELSLEEIRKLKKN 169 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + D +K ND I L +G E GL ++ + M G I++L Sbjct: 170 YRFLSSHMEGIDVRKYDSS---NDSIILAIGNEANGLSEDIRKLTDDFIKISMQGKIESL 226 Query: 264 NVSNAAAVAL 273 N + AA++ + Sbjct: 227 NAAIAASIMM 236 >gi|46447426|ref|YP_008791.1| putative rRNA methylase [Candidatus Protochlamydia amoebophila UWE25] gi|46401067|emb|CAF24516.1| putative rRNA methylase [Candidatus Protochlamydia amoebophila UWE25] Length = 265 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 92/263 (34%), Gaps = 11/263 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARL 81 + K++ + + + G + A + + L Sbjct: 2 QNPKVKQILHLRDRP-ERDISQTFLIEGYRELLRAADADWE-VNLLFICPALFLGMNEPT 59 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL----DAVRNSQLLMV 137 + + + KI ++ LA+ L+ + +V Sbjct: 60 LIERLTSRGTELFYCSEKVFRKISYRDRPDGLLAIAPQRHLTLDDLSLKTKKPMAPFFVV 119 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 + + P N+G ILRS+ A DG+I R + + + +++ G L +P + D Sbjct: 120 AEAIEKPGNLGTILRSSDAVGIDGLIVCDRCTDIYNPNVVRASVGTLFTVPTVEARGE-D 178 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 L ++ G + + ++K Q +A+ +G E GL + + AT + M Sbjct: 179 ILLWLNKQGIDILAATPHAEKEFTQVDLTSPVAIAVGTEQLGLSERWMKQATMQVRIPMM 238 Query: 258 GIIKALNVSNAAAVALYITQNHF 280 G+ +LNV+ A + LY Sbjct: 239 GVADSLNVAMATTLLLYEVLRQR 261 >gi|325000167|ref|ZP_08121279.1| putative tRNA/rRNA methyltransferase [Pseudonocardia sp. P1] Length = 325 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 66/251 (26%), Positives = 108/251 (43%), Gaps = 12/251 (4%) Query: 41 RHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDW--DANLPHPFPVKTVP 97 R + G + V L + +A R+ + VP Sbjct: 72 RRGDGEGPETVLGRNPVVECLRAGVPSTALHVATGMSADERVAEAVSLAAEQGISILEVP 131 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAI 150 +D++ G A+HQGLAL+ P D L + LD V DP N+GA+ Sbjct: 132 RNDLDRLTG-GALHQGLALQVPPYSYAHPDELLEAAADSGRPALTVALDGVTDPRNLGAV 190 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +RS AF G++ +R + +AV ++++G +P R +NLT L++ S G + Sbjct: 191 VRSVGAFGGHGVVVPQRRAAGMTAVAWRTSAGTAVRVPVARATNLTRTLREYASAGLMVV 250 Query: 211 GLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 GL++D L++ +AL+ G+EGKGL +ET + + G +++LN S A Sbjct: 251 GLAADGDVSLDEFDLATGPLALVTGSEGKGLSRLVRETCDLTVSIPLAGRVESLNASVAT 310 Query: 270 AVALYITQNHF 280 V L Sbjct: 311 GVVLAEVARRR 321 >gi|229817008|ref|ZP_04447290.1| hypothetical protein BIFANG_02263 [Bifidobacterium angulatum DSM 20098] gi|229785753|gb|EEP21867.1| hypothetical protein BIFANG_02263 [Bifidobacterium angulatum DSM 20098] Length = 333 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 70/304 (23%), Positives = 131/304 (43%), Gaps = 28/304 (9%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ + R ++ + + + ++ ++G ++V AL Sbjct: 28 TPKAEDRVYHKAYAAKKAADRRKMSDPRLAARRRADKFSTGNTTDLVFGRNSVLEALRVG 87 Query: 65 SRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + R H + +D+I + + HQG+ L+ P Sbjct: 88 -VPSNTLYVMSRIEHDDRTREIVKIASAHGLRMMEADRLEMDRIA-RSSNHQGVILKVEP 145 Query: 121 LLSPTL---------------------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +L + L + LD V DP N+GA++RSA AF Sbjct: 146 YQYSSLAELADRADKKSRAMEAANSAAARISARPLFIALDGVTDPQNLGAVIRSAAAFGA 205 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +G+I +R S S +A K ++GA H+P R+ NLT A++ + + G+ +GL K Sbjct: 206 NGVILPERRSASVTAAAWKVSAGAAAHLPVCRVVNLTKAIEALKARGYYVVGLDGGGDKL 265 Query: 220 LEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + D + ++LG+EGKGL +E ++A + + +++LN S AA ++LY N Sbjct: 266 VGETGFETDPLVVVLGSEGKGLSRLVREACDAIAGIPISSQVESLNASVAAGISLYAVAN 325 Query: 279 HFAK 282 K Sbjct: 326 ERRK 329 >gi|326800581|ref|YP_004318400.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21] gi|326551345|gb|ADZ79730.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21] Length = 252 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 41/247 (16%), Positives = 84/247 (34%), Gaps = 9/247 (3%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 + + + + + G +++ ++ I + T ++D Sbjct: 8 QFVKSLHQKKFRKEHGLFIVEGFKSITDFFHSDY-VIHSIYYTPKVGPKIDI---FGEKI 63 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 + + ++ I + +AL P + Q +VLD + DP N+G I+ Sbjct: 64 KHYPISERDLEAISTLKTPQGIVALIETPSEVAVQEDELRDQFSLVLDTIQDPGNLGTII 123 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A F II ++ + + ++ G+L H+ + Sbjct: 124 RTADWFGIKHIICSEETVECFNPKVVQATMGSLAHVSIHYTDLHAFLKNVTLPSFATVLD 183 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 S + E +ILG EG G+ P T + G ++LNV+ +AA+ Sbjct: 184 GQSIYETDFGSEGF-----IILGNEGNGIAPDLISNKTQRITIPSFGNAESLNVAVSAAI 238 Query: 272 ALYITQN 278 Sbjct: 239 CCSEISR 245 >gi|71064641|ref|YP_263368.1| RNA methyltransferase [Psychrobacter arcticus 273-4] gi|71037626|gb|AAZ17934.1| probable RNA methyltransferase, TrmH family, group 3 [Psychrobacter arcticus 273-4] Length = 256 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 15/244 (6%) Query: 52 YGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 YG+H + A L L + ++ + + ++ + ++ G Sbjct: 8 YGIHAIDALLEYRPLDGLSLFVQQGRETDSHVQAIMAQARDNGISIQPTQKDKLTQLCGS 67 Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 HQG+ L PL A R LL+VLD + D HN GA LR+AVA D + Sbjct: 68 P-QHQGVVLNARPLGFADEGLLDTLAGREDCLLLVLDQITDAHNFGACLRTAVAMGVDAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLE 221 I K ++ S + +AK + GA E +P + ++NL + ++ F + KPL Sbjct: 127 ICPKHHAASLTPTVAKVSVGAAEMMPIVSVTNLARTLTKIKNAGVFVFGTALNADAKPLH 186 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM----PGIIKALNVSNAAAVALYITQ 277 KIA+I+G+EG+G+R T E+ + ++ M G +++LNVS A +ALY Sbjct: 187 TADLTGKIAIIMGSEGEGMRRLTTESCDELVYIPMSGNEHGNLQSLNVSVATGMALYEIN 246 Query: 278 NHFA 281 Sbjct: 247 RQRT 250 >gi|94265268|ref|ZP_01289027.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1] gi|93454249|gb|EAT04565.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1] Length = 302 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 74/278 (26%), Positives = 114/278 (41%), Gaps = 27/278 (9%) Query: 25 RNHRDYKKMQSFNQKSRHT---SQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNAL 78 R KK ++S QPE ++G+H V+ L + +L + Sbjct: 19 RLKPGMKKKVVSRKESGQRWPADQPEASLVWGIHPVTELLRRRPGLVRKLYLAGGRDDGR 78 Query: 79 ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL------------ 126 + H P + + E HQG+A AP +L Sbjct: 79 VAAIVELAASHRIP---LDRAGL-PPAAAELPHQGVAARVAPPSPLSLAELLQRLPALGP 134 Query: 127 -----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 A LL+VLD + DPHN+GA+LRSA AF DG+I K S S + K+A+ Sbjct: 135 APASSPAAGPPPLLLVLDSLQDPHNLGAVLRSAAAFGVDGVILPKDRSAPLSGTVLKAAA 194 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G + R +NL AL + GF G S ++ L + L+LG E KG+R Sbjct: 195 GTAALLDICRTTNLAGALGTLKKHGFWIYGASGEASGNLYETDFTGPTCLVLGNEQKGIR 254 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 P ++ + + + +++LNVS AA + L + Sbjct: 255 PLLKKHCDFLLAIPLAAGVESLNVSVAAGIMLAEIRRR 292 >gi|297738755|emb|CBI28000.3| unnamed protein product [Vitis vinifera] Length = 569 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 78/310 (25%), Positives = 126/310 (40%), Gaps = 34/310 (10%) Query: 1 MNLISKKKSEKIFSL-KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP--ENLF------- 50 M +I + +KI + ++ K R + ++ R T + E+ Sbjct: 240 MEVIDDPRWDKIKNRYTETGDVKGRYERPELRRWNKQENWGRKTWKEATESTIPKIVGEG 299 Query: 51 LYGVHTVSAALNNPSRKIFQLLATKN-----------ALARLDWDANLPHPFPVKTVPPQ 99 +YGV V AAL+ R+ + L + + L + Sbjct: 300 IYGVGPVLAALSAGRREFYALYVQEGLDLSGNNRKKKDKKGFEKVLKLAEKIGLSIKDLS 359 Query: 100 TID-KIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 D +V HQGL L+ +PL P L L + LD V DP N+GAI+ Sbjct: 360 KHDLNMVVDNRPHQGLVLDASPLEMVKIKELDPVLTEGEKGPLWVALDEVTDPQNLGAII 419 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F G++ + S S V++K+++G+LE + N+ L G+Q +G Sbjct: 420 RSAYFFGVSGVVLCAKNSAPLSGVVSKASAGSLELMELRFCKNMMQFLTSSAENGWQVLG 479 Query: 212 LSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNVS 266 S + EI L+LG+EG GLRP + + T + + +++LNVS Sbjct: 480 GSVSPRAIPLNEISPGAPTILVLGSEGTGLRPLVERSCTQLIRIPGNIPSFLAVESLNVS 539 Query: 267 NAAAVALYIT 276 AA V L+ Sbjct: 540 VAAGVLLHHL 549 >gi|325978970|ref|YP_004288686.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178898|emb|CBZ48942.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 246 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + I K K R + + + G H A Sbjct: 1 MTIITSKSNNLIKKTKKLLKKKYRDH---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + ++ R+ + V V P+ + ++ QG+ E A Sbjct: 40 EKAGAEFLN-IFVLEDYADRVSHFSM------VTYVTPEVLKELTD-SKTPQGIIAELAM 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 P D L++ + V DP N+G ++R+A A DG++ +++ + + +S Sbjct: 92 PSLPLADLKAGRYLIL--EDVQDPGNVGTMIRTADAAGLDGVLISEKSADIYNQKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R + + S + N AL++G EG G+ Sbjct: 150 QGSHFHLPIWRTDVYEACQKLQNLDVPLIATTLSKESVDYKTVEHNGDFALVMGNEGNGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + A +AH+ MPG ++LNV+ A + L+ Sbjct: 210 SELMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 245 >gi|290890983|ref|ZP_06554047.1| hypothetical protein AWRIB429_1437 [Oenococcus oeni AWRIB429] gi|290479382|gb|EFD88042.1| hypothetical protein AWRIB429_1437 [Oenococcus oeni AWRIB429] Length = 233 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 58 SAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 AL N + I +L +K+ + V+ V Q +D++ HQG+ Sbjct: 1 MEALENN-QTINKLYLSKSLAKNRAQQFRQTAEKNKIVVQEVDNQRLDELTNH-GNHQGI 58 Query: 115 ALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 A+ A LD + + L++LD + DPHN+G+ILR+A A DGII KR + Sbjct: 59 AISIAAYEYVPLDDILNGIKGHDPFLVILDEIEDPHNLGSILRTADATGVDGIIIPKRRA 118 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + V+AK+++GA+E++P R+ N+ + + K+ F G + + + Sbjct: 119 VQLTQVVAKTSTGAIEYVPVARVVNINNTIDKLKKANFWIFGTDMKGADYNDWN-ADGPV 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A+++G EGKG+ +T++ M + M G +++LN S AAA+ +Y N Sbjct: 178 AIVIGNEGKGISAQTKKKVDQMLTIPMVGHVQSLNASVAAALLIYQGFNSR 228 >gi|148543542|ref|YP_001270912.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016] gi|184152948|ref|YP_001841289.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri JCM 1112] gi|227363502|ref|ZP_03847622.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri MM2-3] gi|227545181|ref|ZP_03975230.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri CF48-3A] gi|300909142|ref|ZP_07126603.1| RNA methyltransferase [Lactobacillus reuteri SD2112] gi|325681891|ref|ZP_08161409.1| RNA methyltransferase [Lactobacillus reuteri MM4-1A] gi|148530576|gb|ABQ82575.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri DSM 20016] gi|183224292|dbj|BAG24809.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri JCM 1112] gi|227071439|gb|EEI09742.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri MM2-3] gi|227184827|gb|EEI64898.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri CF48-3A] gi|300893007|gb|EFK86366.1| RNA methyltransferase [Lactobacillus reuteri SD2112] gi|324978535|gb|EGC15484.1| RNA methyltransferase [Lactobacillus reuteri MM4-1A] Length = 249 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 112/246 (45%), Gaps = 11/246 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 F+ G H AL + K+F K V VP + Sbjct: 2 KNENTDFIIGRHPAVMALKSDQEINKVFIQSGLKADAISQIVKLAKERHLVVSNVPKNKL 61 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSA 154 D + ++ HQG+ L A T+D ++LD + DPHN+G+I+R+A Sbjct: 62 DLMTDRQ-NHQGVVLAVAAYQYATIDDLFDNAAKHDEDPFFLILDELEDPHNLGSIMRTA 120 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A GII +R + ++V+AK+++GA+EH+P R++NL +++ G G Sbjct: 121 DAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLVQTAKELQERGVWLFGTDM 180 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K + + +AL++G EGKG+ ++T M + M G +++LN S AA++ +Y Sbjct: 181 KGKDYRTWD-AHGAVALVIGNEGKGISSLLKKTCDEMLTIPMVGHVQSLNASVAASLLIY 239 Query: 275 ITQNHF 280 N Sbjct: 240 QGFNSR 245 >gi|296129474|ref|YP_003636724.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] gi|296021289|gb|ADG74525.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] Length = 271 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 98/264 (37%), Gaps = 17/264 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K +++ +S + + G V A+ S ++ + T +A AR Sbjct: 8 RVKAVRALASRS-VRRRTGTFLVEGPQAVREAVAPGSPRVHDVYVTVDAAARYPEIVAAA 66 Query: 89 HPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 V+ P +D + + + L L R +L+ VL HV DP N Sbjct: 67 RDVGARVRNGTPDVLDAMSADAQGVVAVVDQVGAGLDDVL--TRRPRLVAVLAHVRDPGN 124 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-- 204 G +LR+A A D ++ T + +S +G+L H+P + L DA+ + S Sbjct: 125 AGTVLRAADAAGADAVVLTASSVDVHNPKTVRSTAGSLFHLPVVPGPELPDAVGALRSAG 184 Query: 205 ----------WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L P + A + G E GLR + A + + Sbjct: 185 LTVLAAAGSGEHDLDDLLDVVGAAPAGVPDLSRPTAWVFGNEAWGLRDEDLALADATVRV 244 Query: 255 HMPGIIKALNVSNAAAVALYITQN 278 + G ++LN++ AA V LY + Sbjct: 245 PLRGRAESLNLATAATVCLYASGR 268 >gi|288906003|ref|YP_003431225.1| rRNA methylase [Streptococcus gallolyticus UCN34] gi|288732729|emb|CBI14303.1| putative rRNA methylase [Streptococcus gallolyticus UCN34] Length = 246 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + I K K R + + + G H A Sbjct: 1 MTIITSKSNNLIKKTKKLLKKKYRDH---------------------SYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + ++ R+ + V V P+ + ++ QG+ E A Sbjct: 40 EKAGAEFLN-IFVLEDYADRVSHFSM------VTYVTPEVLKELTD-SKTPQGIIAELAM 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 P D L++ + V DP N+G ++R+A A DG++ +++ + + +S Sbjct: 92 PSLPLADLKAGRYLVL--EDVQDPGNVGTMIRTADAAGLDGVLISEKSADIYNQKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R + + S + N AL++G EG G+ Sbjct: 150 QGSHFHLPIWRTDVYEACQKLQNLDVPLIATTLSKESVDYKTIEHNGDFALVMGNEGNGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + A +AH+ MPG ++LNV+ A + L+ Sbjct: 210 SELMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 245 >gi|195591559|ref|XP_002085507.1| GD12269 [Drosophila simulans] gi|194197516|gb|EDX11092.1| GD12269 [Drosophila simulans] Length = 407 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 41/294 (13%), Positives = 96/294 (32%), Gaps = 28/294 (9%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + + +L + + + + + + + + G + AL + L + K+ Sbjct: 108 NLEFVRLTLQDPLTSTLLTTVRSRKRRDKKQQIIVEGRRLIQEALQCGLKMEVLLFSQKD 167 Query: 77 ALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 LA + + A L + VP + +A+ P + Q Sbjct: 168 QLALVKEEVGVAQLETGTKIYKVPQHDLKTWSSLVTPPGLMAIFDRPSDKGLEKNLAEQQ 227 Query: 134 LL--------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L +V D++ +P+N+G+I+R+ A C ++ T + + G Sbjct: 228 RLGSQPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQF 287 Query: 186 HIPYIRISNLT-----------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 +P D + Q ++ + + + LI+G Sbjct: 288 RVPIRDDVTWEELALTIPPEAADDCHVFIAESNQRKRENNQTIDYADIQGLGAHNLLIIG 347 Query: 235 AEGKGLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 E G+ + ++ + I +LNV++A + L+ + + Sbjct: 348 GESHGVSEEAYRFLKLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRRKLNQ 401 >gi|260576862|ref|ZP_05844845.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sp. SW2] gi|259020899|gb|EEW24212.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sp. SW2] Length = 265 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 93/238 (39%), Positives = 140/238 (58%), Gaps = 8/238 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++++ + E ++L+G+H V AL NP+R+ +L+ TKNAL +L DA + V Sbjct: 14 KERAKRAAASETVWLFGLHAVRDALLNPAREKLRLVLTKNALDKL-EDAVAACGMAPEVV 72 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS----QLLMVLDHVNDPHNIGAILR 152 P+ D + + +VHQG AL+ PL L V S L+++LD V DPHN+GA+LR Sbjct: 73 EPRQFDVPIDEGSVHQGAALQVRPLNWGKLADVCISGTGAPLVVLLDRVTDPHNVGAVLR 132 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA F +I R+S E+ LAK+ASGALE PY+R+ NL DA+Q++ + G+ +GL Sbjct: 133 SAEVFGARAVIAPARHSAPETGALAKTASGALERQPYLRVVNLADAMQELQAMGYVLLGL 192 Query: 213 SSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +++ L Q + I L+LGAEG GLR +T+ET + + G +LNVSN Sbjct: 193 DGEAEVTLAQAVAEAGTRPIGLVLGAEGPGLRDRTRETCDRLVRIPAQGGFGSLNVSN 250 >gi|219849563|ref|YP_002463996.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aggregans DSM 9485] gi|219543822|gb|ACL25560.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aggregans DSM 9485] Length = 252 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 63/245 (25%), Positives = 117/245 (47%), Gaps = 13/245 (5%) Query: 48 NLFLYGVHTVSAALNNPSRK----IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + LYG + V AL R + ++ + P++ + Q +D+ Sbjct: 3 SELLYGRNAVREALRARRRTLRRLVVSRSVQESGIIADIIRLAEQAGIPIERIERQILDR 62 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156 + ++A HQG+ LET P LD R + LL++LDH+ DP N+G +LR+A A Sbjct: 63 QL-RDANHQGVMLETGPYPYVELDECLSSANARREAALLLLLDHLQDPQNLGTLLRTAEA 121 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSD 215 C GII R + + + ++SGA+EH+ ++NL+ +++ H+ + + Sbjct: 122 VGCHGIIIPGRRAAEITPAVVNASSGAVEHLRVAMVTNLSQTIEELQHNGIWVVGLEQDE 181 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + ++ N + L++GAEG G+ +E + L + G I +LN + A ++A+Y Sbjct: 182 TAQDIDAVDLNLPLGLVIGAEGTGMSRLVRERCDFLVRLPIVGQIGSLNAAVAGSIAIYH 241 Query: 276 TQNHF 280 Sbjct: 242 AWRQR 246 >gi|282858069|ref|ZP_06267264.1| RNA methyltransferase, TrmH family, group 3 [Pyramidobacter piscolens W5455] gi|282583991|gb|EFB89364.1| RNA methyltransferase, TrmH family, group 3 [Pyramidobacter piscolens W5455] Length = 269 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 113/238 (47%), Gaps = 10/238 (4%) Query: 50 FLYGVHTVSAALNNPS---RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +G + V L + RK+F L ++ P+ V + ++++ G Sbjct: 23 LCWGRNPVLTLLEHRPELCRKVFLLAGAQDEFRDTVARLCADGRIPLDFVEREELERLSG 82 Query: 107 KEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 AVHQG+A AP+ LD + L+++LDH DPHN+GA++R+A Sbjct: 83 -GAVHQGVAARVAPIPPADLDGVVDALDPQAPALIVLLDHCQDPHNLGAVIRTAEVAGAA 141 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ S + + + K+++GA +P ++ N+ A++++ GF +GL + + + Sbjct: 142 CVVCQNDRSATVNGTVVKTSAGAAFRLPVAQVVNVGRAVERLKRKGFWVVGLDHRTDETV 201 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +++AL++G+EG+G+ T + + M G LN S AAA+ ++ Sbjct: 202 WSSALPERLALVVGSEGEGISALTAKKCDMLVKFPMAGRTGNLNASVAAALGMFEWVR 259 >gi|169334564|ref|ZP_02861757.1| hypothetical protein ANASTE_00967 [Anaerofustis stercorihominis DSM 17244] gi|169259281|gb|EDS73247.1| hypothetical protein ANASTE_00967 [Anaerofustis stercorihominis DSM 17244] Length = 252 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 96/262 (36%), Gaps = 18/262 (6%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72 S + + + ++ K ++S +K ++ + L G+ V A+ N + I ++ Sbjct: 3 KSKRKAMIT--SKTNKIIKLVKSL-EKKKYQDKYGLYVLEGIKFVKDAVINKNHIIKYII 59 Query: 73 ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132 T+ D V + I + LA ++ + + Sbjct: 60 TTEEYTEDYDDAL---------EVDNEIFKYISSTKTPQGVLA--VLETKYCDINDINKN 108 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++ LD V DP N+G ++RS+V D +I SP S + SA + + Sbjct: 109 DNILYLDTVQDPENVGGLIRSSVCTDFDAVILNSSASPFLSKAVRASAGSIINTKIILDE 168 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 K + L+ L LI+G EG G+ + + AT Sbjct: 169 DYKILKTLKEKGFDIIASTLNGKEDITLN----KKNNVLIVGNEGNGISDECLKYATKEV 224 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M G ++LN + + ++ +Y Sbjct: 225 KIPMSGKCESLNANVSGSILMY 246 >gi|85707218|ref|ZP_01038304.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. 217] gi|85668272|gb|EAQ23147.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. 217] Length = 258 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 85/239 (35%), Positives = 138/239 (57%), Gaps = 9/239 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++++ S E ++L+G+H V AL NPSR+ +L+ TKNA +L+ + V Sbjct: 10 KEQAKRASASETVWLFGLHAVRDALENPSREKLRLIVTKNAADKLEAAIA-ASGITPEEV 68 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAIL 151 P+ + + +VHQG ALE PL L R + +++LD V DPHN+GAIL Sbjct: 69 DPRKFNAPLDPGSVHQGAALEVKPLDWGPIGEVCLGDGRTAPRVVLLDRVTDPHNVGAIL 128 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F +I + ++ E+ LAK+ASGALE PY+R+ NL DA+ ++ + G+ +G Sbjct: 129 RSAEVFGARAVIAPRHHAAPETGALAKTASGALERQPYLRVRNLADAIIELQAMGYLVLG 188 Query: 212 LSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L+ +++ +E + ++ +AL+LGAEG GLR +T+E ++ + +LNVSN Sbjct: 189 LAGEAEMTIEAAMEGRRDRPVALVLGAEGPGLRERTREVCDALVRIEFASDFGSLNVSN 247 >gi|160941410|ref|ZP_02088747.1| hypothetical protein CLOBOL_06303 [Clostridium bolteae ATCC BAA-613] gi|158435971|gb|EDP13738.1| hypothetical protein CLOBOL_06303 [Clostridium bolteae ATCC BAA-613] Length = 274 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 97/257 (37%), Gaps = 7/257 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ +RH + AL+ I L+ K+ ++ Sbjct: 18 YARLTEGQLLNRHEPDKGVFIAESPKVIERALDAGCVPISMLMEKKHVESQAREIIQRCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV + ++ G L P L + ++ + VL++V +P N+GA Sbjct: 78 EIPVYAAEFDVLTQLTGFHLTRGMLCAMYRPPLPGPEEICEGARRIAVLENVMNPTNVGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A + DG++ T S + + G + IP+ + + Q+ + + Sbjct: 138 IFRSAAALNMDGVLLTSACSNPLYRRAVRVSMGTVFQIPWTFLDSRLSWPQEGVGFLREL 197 Query: 210 IGLSSDSKKPLEQE-------IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 ++ + + +K+A+ILG EG GL T + M + + Sbjct: 198 GFATAAMALNDDSVSIDDSGLMSEEKLAIILGTEGDGLAAGTIAGCDYTVRIPMSHGVDS 257 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ A+AVA + Sbjct: 258 LNVAAASAVAFWQLGRR 274 >gi|193216530|ref|YP_001999772.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis 158L3-1] gi|193001853|gb|ACF07068.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis 158L3-1] Length = 229 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 11/232 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG ++V AL I ++ K + + N ++ + Q ++++V K Sbjct: 4 LIYGKNSVLDALKAN-FPIAKIYLQKGLVNKAITFKN------IEYLSIQEMNQLV-KNG 55 Query: 110 VHQGLALETAPLLSPTL--DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQG E L L+++LDH+ DPHN GAI+R+A F II K Sbjct: 56 NHQGYIAEIYNYQYYDLGTIFKDKPNLVLMLDHIQDPHNFGAIIRNANGFGIKHIIIPKN 115 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + + + K +SGA I IR+ +L D + + + D L + Sbjct: 116 RACEVTPTVLKISSGAFTEIKIIRVGSLFDTLKELQKNGFWIYSSTLDDKATKLHKTKFA 175 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 LI+G E G+ + + ++ ++ G +++LNV++A AV LY Sbjct: 176 TPTCLIVGNEESGVSHTLIKHSDALVYIEQKGTVQSLNVASATAVLLYEATK 227 >gi|289644294|ref|ZP_06476380.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca glomerata] gi|289505906|gb|EFD26919.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca glomerata] Length = 310 Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 51/254 (20%), Positives = 87/254 (34%), Gaps = 6/254 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 RDY + + R G + A R L+ A+L Sbjct: 48 RDYVGLTDVALRRRREPAEGLFIAEGEMVIERARRAGYRPRSLLVGPAKVATVP---ADL 104 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 PV P + I G + LA +P D + ++ ++V + + N+ Sbjct: 105 EPGVPVYLAGPDVLATITGFQVHRGALASMCRRPPAPAADVLATARRVLVCEDIVSHTNL 164 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG---ALEHIPYIRISNLTDALQKMHS 204 GAI RSA D ++ + + + + G A+ + L K Sbjct: 165 GAIFRSAAGLGMDAVLLSPSCADPLYRRSVRVSMGEVFAVPYARLDPWPAALSLLVKHGF 224 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ D++AL+LG+EG GL AT + M + +LN Sbjct: 225 MLVALTPSATAVPLDELAVSSYDRLALLLGSEGPGLTRDALGVATVRVRIPMAHGVDSLN 284 Query: 265 VSNAAAVALYITQN 278 V+ AA+A Y+ Sbjct: 285 VAATAAIACYVLGR 298 >gi|282601244|ref|ZP_05981182.2| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM 15176] gi|282569669|gb|EFB75204.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM 15176] Length = 297 Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 94/256 (36%), Gaps = 8/256 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ +++ + + AL+ + + L+ + Sbjct: 40 YARLTEAQLRNKLEPEKGVFIAESPKVIGTALDAGYKPLSFLMERRQIEGPAAGVLARCP 99 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 V T ++ + G L P + RN++ + VL+ + D NIGA Sbjct: 100 DATVYTADRAVLESLTGYALTRGVLCAMHRPAPRTAEEVCRNARRVAVLEGIVDSTNIGA 159 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ + + + G + +P+ R+ + Sbjct: 160 IFRSAAALGMDAVLLSPSCCDPLCRRAIRVSMGTVFQVPWARLGEDKTQWPEAGLARLHA 219 Query: 210 IGLSSDSKKPLEQE--------IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 +G ++ + ++ +K+A++LG EG GL +T + + M + Sbjct: 220 MGFTTAAMALDDRALPVDDPALQAAEKLAIVLGTEGDGLAAETIARCDATVMIPMQHGVD 279 Query: 262 ALNVSNAAAVALYITQ 277 +LNV AAAVA + + Sbjct: 280 SLNVGAAAAVAFWQLR 295 >gi|306835998|ref|ZP_07468990.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC 49726] gi|304568164|gb|EFM43737.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC 49726] Length = 268 Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 101/254 (39%), Gaps = 7/254 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + ++ + + + + G + V AA++ + + T+ A R Sbjct: 14 PRIVNAAKLH-RAANRKKAKQFIIEGENAVDAAVSTGAATD--VFVTEKAAERFADIVTA 70 Query: 88 PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDP 144 V + + + AL ++ L +L+ V ++P Sbjct: 71 CGYMDVYVHPITDKAAKHLADTATTTGIFALCSSSALWSAGKILNGKPKLISVPVLTSEP 130 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N G ++R++ A DG+I + +A++++G+L H+P R N+ D L ++ Sbjct: 131 GNAGTLIRTSDAMGADGVIFAGETVDPLGSKVARASAGSLFHVPVARDPNIKDVLGQLRK 190 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G Q + ++D + L A + G E GL + E A + + G ++LN Sbjct: 191 SGMQIVATAADGEVELADADLTQPTAWLFGNEAHGLG-ELLEEADMRVRIPLRGRAESLN 249 Query: 265 VSNAAAVALYITQN 278 ++ AA++ LY + Sbjct: 250 LATAASICLYESAK 263 >gi|269218391|ref|ZP_06162245.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848 str. F0332] gi|269212250|gb|EEZ78590.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848 str. F0332] Length = 285 Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 59/281 (20%), Positives = 102/281 (36%), Gaps = 23/281 (8%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 + D H +L DY ++ + + ++ + A+ R +LA Sbjct: 5 ITDIHDDRLS----DYVRLTDVALRKKLETENGLYMAESSKVIQRAIAAGHRP-RSVLAD 59 Query: 75 KNALARLDWDANLPHP------FPVKTVPPQTIDKIVGKE----AVHQGLALETAPLLSP 124 + LA L PV + + +I G A+ A + Sbjct: 60 ERWLADLAPSLTKAGGDGEGGDIPVYVCDEEKLQEIAGFHLHRGAIAAMNRPALADPRAM 119 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 ++VL+++ D N+GAI RSA A D + T + + + G + Sbjct: 120 LEAVGSGPARIVVLENLVDHTNVGAIFRSAAALGVDAVFVTSDCADPLYRRSVRVSMGTV 179 Query: 185 EHIPYIRISNLTDALQKMHSWGF--------QTIGLSSDSKKPLEQEIKNDKIALILGAE 236 +P+ RI + + + G+ + K+ KIA+ILGAE Sbjct: 180 FQVPWTRIDGWPRSAKMLSECGYTTAALALTDDAVALDAFSRLEVCSAKDSKIAIILGAE 239 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 G GLR T + M G + +LNV+ A AVA + + Sbjct: 240 GDGLRDSTIAAVDHSVVIPMAGDVDSLNVAAAMAVACWELR 280 >gi|224282928|ref|ZP_03646250.1| tRNA/rRNA methyltransferase [Bifidobacterium bifidum NCIMB 41171] gi|311064212|ref|YP_003970937.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum PRL2010] gi|313140087|ref|ZP_07802280.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171] gi|310866531|gb|ADP35900.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum PRL2010] gi|313132597|gb|EFR50214.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171] Length = 292 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 61/304 (20%), Positives = 102/304 (33%), Gaps = 35/304 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ I S+ D A Y + ++R + + A Sbjct: 1 MQFIT------IDSIDDERVA-------AYTNLTEIQLRNRLEPERGLFIAESPKVIDRA 47 Query: 61 LNNPSRKIFQL----LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 L I L + D PV P+ + ++ G L+ Sbjct: 48 LAAGREPISLLVEEPWIEGMSQTFDVVDKRWGTDIPVYVASPEQLRQLTGYRLHRGALSA 107 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 L + R+++ + V++++ D N+GA++RSA A D ++ T Sbjct: 108 MRRWPLPSVEETCRDARRVAVMENIVDHTNVGALMRSAAALDVDAVLVTPSCGDPLYRRA 167 Query: 177 AKSASGALEHIPYIRISNLTDAL------------------QKMHSWGFQTIGLSSDSKK 218 A+ + G + IP+ RI + L+ Sbjct: 168 ARVSMGTVFQIPWTRIGGDDKHFWPRRGLEELRSLGFTTVAMALSDDSISLDELTRRLNN 227 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 E DK+ALI G EG GL T A + M + +LNV+ ++AVA Y T Sbjct: 228 SPESADHIDKLALIFGTEGDGLSRHTIAGADLTVKIPMSHGVDSLNVAASSAVAFYATSP 287 Query: 279 HFAK 282 A+ Sbjct: 288 KRAE 291 >gi|256384318|gb|ACU78888.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma mycoides subsp. capri str. GM12] gi|256385151|gb|ACU79720.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma mycoides subsp. capri str. GM12] gi|296455808|gb|ADH22043.1| RNA methyltransferase, TrmH family, group 3 [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 244 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 93/240 (38%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG H V L + ++ L L+ V V +D+++ + Sbjct: 5 LIYGKHVVFELLKKHQNMVKEIWV--KDLKILNEFDLKNTKIKVNVVSENKLDQLLETQT 62 Query: 110 VHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + + + L+++LD ++DP+N GAI+RS + DGII Sbjct: 63 QHQGIIAQIKDYNYTPFNQLINDLNTKEKSLVLILDQIHDPYNFGAIIRSCSLLNVDGII 122 Query: 164 T-TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 K+ S VL S+ A + + ++ + + + + + Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFDIKICKTNNLNNAIKILKNNDFWIYATNLNQNSTDMTK 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +K A+I+G E KG+ + + ++ I + N S A ++ + N+ K Sbjct: 183 IDFANKTAVIIGNEQKGVSELLTKNSDFNVYVPSNKNIDSFNASVACSIICFWIANYLNK 242 >gi|145596730|ref|YP_001161027.1| RNA methyltransferase [Salinispora tropica CNB-440] gi|145306067|gb|ABP56649.1| RNA methyltransferase, TrmH family, group 3 [Salinispora tropica CNB-440] Length = 373 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 61/253 (24%), Positives = 110/253 (43%), Gaps = 11/253 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKT 95 + + ++ L G + V +L I + + + Sbjct: 119 RRTNPAKDAPELLVGRNPVLESLRANVPAIALYVAQGLNTDDRISEIVRTAADRGIAMLE 178 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGA 149 V +D++ G +HQG+ L+ P + + + LL+ LD V DP N+GA Sbjct: 179 VSRAELDRMTG-GVLHQGVGLQVPPFRYEPFEDLTAAALEQPAPLLVALDGVTDPRNLGA 237 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ++RSA AF G+ +R + +A ++++GA +P +++NLT AL+ GF Sbjct: 238 VIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRALKACKDAGFVV 297 Query: 210 IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL +D + L + +++G+EG+GL +T + M +++LN S A Sbjct: 298 VGLDADGETDLYHLEAAVGPLVVVVGSEGRGLSRLVGQTCDLTVQIPMVSDVESLNASVA 357 Query: 269 AAVALYITQNHFA 281 AAV L A Sbjct: 358 AAVTLAEVARRRA 370 >gi|194468086|ref|ZP_03074072.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri 100-23] gi|194452939|gb|EDX41837.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri 100-23] Length = 249 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 112/246 (45%), Gaps = 11/246 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 F+ G H AL + K+F K V VP + Sbjct: 2 KNENTDFIIGRHPAVMALKSDQEINKVFIQSGLKADAISQIVKLAKERHLVVSNVPKNKL 61 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSA 154 D + ++ HQG+ L A T+D ++LD + DPHN+G+I+R+A Sbjct: 62 DLMTDRQ-NHQGVVLAVAAYQYATIDDLFDNAAKHGEDPFFLILDELEDPHNLGSIMRTA 120 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A GII +R + ++V+AK+++GA+EH+P R++NL +++ G G Sbjct: 121 DAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLVQTAKELQERGVWLFGTDM 180 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K + + +AL++G EGKG+ ++T M + M G +++LN S AA++ +Y Sbjct: 181 KGKDYRTWD-AHGAVALVIGNEGKGISSLLKKTCDEMLTIPMVGHVQSLNASVAASLLIY 239 Query: 275 ITQNHF 280 N Sbjct: 240 QGFNSR 245 >gi|51473842|ref|YP_067599.1| tRNA/rRNA methyltransferase [Rickettsia typhi str. Wilmington] gi|51460154|gb|AAU04117.1| tRNA/rRNA methyltransferase [Rickettsia typhi str. Wilmington] Length = 248 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 123/237 (51%), Gaps = 5/237 (2%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + ++YG H V +A+NNP R+I +L T+ D + L P + V I K++ Sbjct: 15 QNSYYMYGKHPVFSAINNPKRQIENILCTREIF---DINKKLIGTRPYEIVNNYIISKLL 71 Query: 106 GKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + A +D +++LD + D NIGAI+RSA AF + II Sbjct: 72 KHQTHQGIAAKVRPIFSYNLDDIDINNPQCKIVILDQITDTQNIGAIIRSAAAFYINAII 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + SP+ES +AK+A G LE IP I+++NL + + GF IG++ + + + Sbjct: 132 LPQDNSPNESGSIAKAACGTLELIPIIKVTNLCSYMNYLKKRGFWIIGVTGYANEYFTDK 191 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +DKIAL+ GAE KG+R +ET +A + + +++LNV+NAA++ + F Sbjct: 192 FISDKIALVFGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANAASIIFHSLHKSF 248 >gi|41407453|ref|NP_960289.1| TsnR [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395805|gb|AAS03672.1| TsnR [Mycobacterium avium subsp. paratuberculosis K-10] Length = 263 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 89/238 (37%), Gaps = 5/238 (2%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + G + V AA + + T+ A R PV V + Sbjct: 21 RRRAARFLAEGSNLVEAA--AGRGLVRDVFVTEAAQQRYAPLLAAL-DCPVHLVTERAAK 77 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A+ P + +L+ V +++P N G ++R A A G+ Sbjct: 78 ALSDTVTPAGLVAVCDLPATGLRDVLAGSPRLIAVAVQISEPGNAGTLIRLADAMGAAGV 137 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + + ++++G++ +P +L +A+ + G Q + + D + L++ Sbjct: 138 LLAGHSVDPYNGKCLRASAGSIFSVPVAAAPDLREAVAAVREAGLQLLATTVDGEVRLDR 197 Query: 223 EI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + G E GL A + M G ++LNV++AAA+ LY + Sbjct: 198 AGELLAKPTAWLFGPESHGLPSAVAAAADHRVCIPMAGGAESLNVASAAAICLYQSAR 255 >gi|53713569|ref|YP_099561.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46] gi|60681852|ref|YP_211996.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis NCTC 9343] gi|253565559|ref|ZP_04843014.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265763891|ref|ZP_06092459.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52216434|dbj|BAD49027.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46] gi|60493286|emb|CAH08070.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis NCTC 9343] gi|251945838|gb|EES86245.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263256499|gb|EEZ27845.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301163344|emb|CBW22894.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis 638R] Length = 253 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 85/255 (33%), Gaps = 16/255 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K + + + G V L L+AT + L Sbjct: 8 RIKYIRSLELK-KIRKEEKVFLAEGPKLVGDVL--GYFPCKLLIATSDWLEEHPAVQAA- 63 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V V + + + Q + + L + LD + DP N+G Sbjct: 64 ---EVIEVTSEELSR-TSLLKTPQQVLALFEQPEYEIDMEAIRNSLCLALDDIQDPGNLG 119 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I + + ++ G + + + MHS G Sbjct: 120 TIIRLADWFGIEHIFCSPNTVDVFNPKTIQATMGGIARVKVYYTALP----DLMHSLGNV 175 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264 + + + + ++ + +I+G EG G+ P+ ++ ++ ++LN Sbjct: 176 PVYGTLLDGENMYEQPLSKNGIIIMGNEGNGISPEIEKLVNRKLYIPNYPAERETSESLN 235 Query: 265 VSNAAAVALYITQNH 279 V+ A A+ + Sbjct: 236 VAIATAIVCAEFRRQ 250 >gi|255659702|ref|ZP_05405111.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM 20544] gi|260848276|gb|EEX68283.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM 20544] Length = 271 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 97/264 (36%), Gaps = 11/264 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDW 83 +++ K M+S + +H ++ + GV + F L + Sbjct: 7 SNKKIKLMESLRLR-KHRAKEGLFRIEGVRLSEMVAASGWAIRFGLYTAELVEKERGRAL 65 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGL------ALETAPLLSPTLDAVRNSQLLMV 137 L P+ + K+ + + A LL+V Sbjct: 66 VEALQAKCPLYEIGAALAKKVAATDTPQGIFLVAEQQKKSLPQMAEHLQQAAARKPLLVV 125 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD V DP N G I+R+A A DG+I TK S ++ G+L H+P + + + Sbjct: 126 LDGVQDPGNAGTIIRTADAVGADGVILTKGSVDVFSDKTVRATMGSLFHLPVVTDVSAEE 185 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSMAHLHM 256 + G Q + + D + + K +LI G EG G+ + A ++ M Sbjct: 186 VATFAQAAGCQLLATALDEQAKPHFAVDFGKGSLIAFGNEGGGVSEELLAAA-EKVYIPM 244 Query: 257 PGIIKALNVSNAAAVALYITQNHF 280 G ++LNV ++AV LY Sbjct: 245 YGEAESLNVGVSSAVVLYEAVRQR 268 >gi|223985223|ref|ZP_03635307.1| hypothetical protein HOLDEFILI_02613 [Holdemania filiformis DSM 12042] gi|223962801|gb|EEF67229.1| hypothetical protein HOLDEFILI_02613 [Holdemania filiformis DSM 12042] Length = 244 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 60/278 (21%), Positives = 103/278 (37%), Gaps = 36/278 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ +EK+ + Q+ ++ Q + G H + A Sbjct: 1 ME-INSPMNEKVKNWAKL-------------------QQKKYRDQTGKFLVEGEHLIGEA 40 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + QLL + + + K+ + G L Sbjct: 41 LKAGA--VEQLLIEAGRTNPFEREKEA------IVCGESVMRKLSANVS---GAWLIAVC 89 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T +VLD V DP N+G I+R+AVAF D ++ + + + +S Sbjct: 90 TQKTTA---PAGLRTVVLDGVQDPGNVGTIIRTAVAFGFDQVLLSPDCADVYNEKCVRST 146 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GAL HI R + + +PL + ++ IA++LG EG+G+ Sbjct: 147 QGALFHIAISRTELIPALNELKELGVTVIGTA-LQGAQPLSELPVSENIAVVLGNEGQGI 205 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 RP T + A + M ++LNV+ AA + LY + Sbjct: 206 RPATLDICDQRALIEMS-SFESLNVAVAAGICLYRYRR 242 >gi|182437813|ref|YP_001825532.1| putative tRNA/rRNA methyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778448|ref|ZP_08237713.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces cf. griseus XylebKG-1] gi|178466329|dbj|BAG20849.1| putative tRNA/rRNA methyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658781|gb|EGE43627.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces cf. griseus XylebKG-1] Length = 318 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 13/245 (5%) Query: 48 NLFLYGVHTVSAALNNPS---RKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDK 103 + + G + V AL + Q + R + P +D+ Sbjct: 74 SEMVVGRNPVYEALRDGVPATTLYVQQYIDNDERVRDALKLAGERGNINLMEAPRPELDR 133 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQGL L+ P + L++ LD V DP N+GAI+RS A Sbjct: 134 MTNGL-NHQGLVLQVPPYEYAHPEDLTAAAYDNNEDPLIVALDGVTDPRNLGAIVRSVSA 192 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F G++ +R + +A KS++G P R++NLT AL+ G +GL++D Sbjct: 193 FGGHGVVVPERRAAGMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADG 252 Query: 217 KKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + +E E + +++G+EGKGL ET + MPG ++LN AA + LY Sbjct: 253 EHTVEDLEELAGPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYE 312 Query: 276 TQNHF 280 Sbjct: 313 VARRR 317 >gi|219684256|ref|ZP_03539200.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii PBr] gi|219672245|gb|EED29298.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii PBr] Length = 246 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 110/240 (45%), Gaps = 15/240 (6%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 +++ ++ N ++ K++ + + + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG-FELYISKKSSKTKEIERLAKTQNIKIIRISTNELDKIL-KSKDHRGF 64 Query: 115 ALETAPLLSPTLDAV-------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AL+ + + +++LD + DP N GAILR+A FS D Sbjct: 65 ALKLKLEKNKNEKTQTKDFENLLETFKKKEHAFILLLDEIEDPQNFGAILRTAEQFSIDL 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++TT++ S ++ + +++SGA +++ I ++N+ + + + GF + + Sbjct: 125 VVTTQKRSAKDNLTVLRTSSGASQYVKKITVTNINNTIYSLKKHGFWIYAGDIKGQDINK 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +I + KIALILG EGKG+ +E + + + G I +LNVS + + ++ + Sbjct: 185 IKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244 >gi|310287371|ref|YP_003938629.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17] gi|309251307|gb|ADO53055.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17] Length = 292 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 60/304 (19%), Positives = 101/304 (33%), Gaps = 35/304 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ I S+ D A Y + ++R + + A Sbjct: 1 MQFIT------IDSIDDERVA-------AYTNLTEIQLRNRLEPERGLFIAESPKVIDRA 47 Query: 61 LNNPSRKIFQL----LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 L I L + D PV P+ + ++ G L+ Sbjct: 48 LAAGREPISLLVEEPWIEGMSQTFDVVDKRWGTDIPVYVASPEQLRQLTGYRLHRGALSA 107 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 L + R+++ + V++++ D N+GA++RSA A D ++ T Sbjct: 108 MRRWPLPSVEETCRDARRVAVMENIVDHTNVGALMRSAAALDVDAVLVTPSCGDPLYRRA 167 Query: 177 AKSASGALEHIPYIRISNLTDAL------------------QKMHSWGFQTIGLSSDSKK 218 A+ + G + IP+ RI + L+ Sbjct: 168 ARVSMGTVFQIPWTRIGGDDKHFWPRRGLEELRSLGFTTVAMALSDDSISLDELTRRLNN 227 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 E K+ALI G EG GL T A + M + +LNV+ ++AVA Y T Sbjct: 228 SPESADHIGKLALIFGTEGDGLSRHTIAGADLTVKIPMSHGVDSLNVAASSAVAFYATSP 287 Query: 279 HFAK 282 A+ Sbjct: 288 KRAE 291 >gi|195941652|ref|ZP_03087034.1| rRNA methylase [Borrelia burgdorferi 80a] gi|312149360|gb|ADQ29431.1| RNA methyltransferase, TrmH family [Borrelia burgdorferi N40] Length = 246 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 113/240 (47%), Gaps = 15/240 (6%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 +++ ++ N ++ K++ + + + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG-FELYISKKSSKTKEIEQLAKTQNIKIIRINANELDKIL-KNKDHRGF 64 Query: 115 ALETAPLLSPTLDAVRNSQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AL+ + + +++LD + DP N GAILR+A FS D Sbjct: 65 ALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDL 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +ITT++ S +++ + +++SGA +++ + ++N+ + + + ++GF + + Sbjct: 125 VITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDINK 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +I + KIALILG EGKG+ +E + + + G I +LNVS + + ++ + Sbjct: 185 IKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244 >gi|256826592|ref|YP_003150551.1| rRNA methylase [Cryptobacterium curtum DSM 15641] gi|256582735|gb|ACU93869.1| rRNA methylase [Cryptobacterium curtum DSM 15641] Length = 284 Score = 109 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 60/288 (20%), Positives = 106/288 (36%), Gaps = 25/288 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN+I I S D Y ++ ++R + ++ A Sbjct: 1 MNIIE------INSWDDPRLD-------AYARLTEAQLRNRLEPERGLFIAESPKVIARA 47 Query: 61 LNNPSRKIFQLLATKN-ALARLDWDANLPHP---FPVKTVPPQTIDKIVGKEAVHQGLAL 116 L + + L+ ++ A AR + PV T + + ++ G E L Sbjct: 48 LAAGMQPLSFLMERQHLAAARTLIEGCTAEDGSDIPVFTGSTEILSRLTGFELTRGVLCA 107 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 P L D + N++ + VL+ + D N+GA RSA A D ++ T Sbjct: 108 MRRPALPSVEDLLANARRVAVLEGIVDHTNVGAAFRSAAALGIDAVLVTPTCCDPLYRRS 167 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--------EIKNDK 228 + + G + +P+ RI D G S+ + + ++ Sbjct: 168 VRVSMGTVFQVPWTRIGQTPDDWPDRGLERLHACGFSTAAMALSDNSVSLSDAALNACER 227 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +A+I+G EG GL +T + M + +LNV+ A+AVA Y Sbjct: 228 LAIIMGTEGDGLAKRTIAQCDFTVRIPMRHGVDSLNVAAASAVAFYQL 275 >gi|15827732|ref|NP_301995.1| rRNA methyltransferase [Mycobacterium leprae TN] gi|221230209|ref|YP_002503625.1| putative rRNA methyltransferase [Mycobacterium leprae Br4923] gi|13093283|emb|CAC31778.1| putative rRNA methyltransferase [Mycobacterium leprae] gi|219933316|emb|CAR71492.1| putative rRNA methyltransferase [Mycobacterium leprae Br4923] Length = 259 Score = 109 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 82/232 (35%), Gaps = 5/232 (2%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 G + V AA+ + + + T+ A R PV V + + Sbjct: 27 FLAEGPNLVEAAIVSG--LVRDVFVTEVAAQRHATVLATLK-CPVHPVSERAAKALSDTV 83 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 +A+ P + QL++ +++P N G ++R A A +I Sbjct: 84 TPTGLIAVCEMPTTRLATVLAGSPQLVVAAVEISEPGNAGTVIRIADAMGAAAVIFGGYT 143 Query: 169 SPSESAVLAKSASGALE--HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + +S++G++ + + + + ++ + + Sbjct: 144 VDPYNGKCLRSSAGSIFSITVVVASDAYAAVTELRAAGLQVLATMVDGETSLDEAKPLLG 203 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + G+E GL + E A + M G +++LNV+ AA+ LY + Sbjct: 204 KPTAWLFGSEPHGLSTEIAEAADYRVRIPMVGGVESLNVAATAAICLYQSSR 255 >gi|220912632|ref|YP_002487941.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] gi|219859510|gb|ACL39852.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] Length = 269 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 97/252 (38%), Gaps = 4/252 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + + + + AL + + LA LD Sbjct: 16 DYTTLTDVHLRKLREPREGMYIAESSRVLRRALAAGHQP-RSFFLAEKWLADLDDVFQAY 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV +++I G +A P P + + ++ + VL+ + D N+G Sbjct: 75 PDVPVFIGKAALLEEITGFHLHRGAMAAMERPDPVPLPELLAGARRVAVLEDIVDHTNVG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI RSA A D ++ + R + + G + +P+ R+ + LQ + GF Sbjct: 135 AIFRSAAALDIDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLESWPQDLQVLKDHGFT 194 Query: 209 TIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 L + D++AL+LG EG G+ P+T + M + +LNV Sbjct: 195 VAALELTGDARDVDAVAATNPDRLALVLGTEGAGMSPETLAAVDLAVKIPMRNGVDSLNV 254 Query: 266 SNAAAVALYITQ 277 + A+AVA + + Sbjct: 255 AAASAVAFWELR 266 >gi|315037582|ref|YP_004031150.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1112] gi|325956064|ref|YP_004286674.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus 30SC] gi|312275715|gb|ADQ58355.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1112] gi|325332629|gb|ADZ06537.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus 30SC] gi|327182878|gb|AEA31325.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1118] Length = 250 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 114/246 (46%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101 F++G H L + S +I ++ V+TVP + Sbjct: 3 SNKDFVFGRHAGLDYLKTHNSDQINKVFLQHGVQEDFANQVYAITKKKRLVVQTVPKNKL 62 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSA 154 D++V + HQGL L + LD L++LD + DPHN+G+ILRSA Sbjct: 63 DRLV-EGGNHQGLVLAISSFEYANLDQLLDQFDQEGKEPFLLMLDSIEDPHNLGSILRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A DGII KR++ ++V+AK+++GA++++P R++NL +++ G+ G Sbjct: 122 DATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWIFGTDM 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E N K L++G EGKG+ P ++ L M G +++LN S A V LY Sbjct: 182 AGVDYREWN-ANGKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLY 240 Query: 275 ITQNHF 280 N Sbjct: 241 QAFNSR 246 >gi|296164543|ref|ZP_06847114.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900143|gb|EFG79578.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 265 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 83/238 (34%), Gaps = 5/238 (2%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + G + V AA + + T+ A R PV V + Sbjct: 23 RRRAGRFLAEGANLVEAA--AARGLVRDVFVTEAAERRYAALLG-AQRCPVHLVSERAAK 79 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A+ P + +L+ V + +P N G ++R A A G+ Sbjct: 80 ALSDTVTPAGLVAVCDMPATQLADVLAGSPRLIAVAVEIGEPGNAGTVIRLAAAMGAHGV 139 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD--ALQKMHSWGFQTIGLSSDSKKPL 220 I + ++++G++ IP + ++ + + + + Sbjct: 140 ILGGHSVDPYNGKCLRASTGSIFSIPVVTEPDVPAALDALRGAGLQVLATTVDGEKRLDE 199 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ A + G E +GL A + M G ++LNV++AAA+ LY + Sbjct: 200 SADLLGRPTAWLFGPESRGLPSDVAGAADHRMRIPMSGGAESLNVASAAAICLYQSAQ 257 >gi|119963510|ref|YP_947871.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1] gi|119950369|gb|ABM09280.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens TC1] Length = 269 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 95/252 (37%), Gaps = 4/252 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + + + + AL + + L LD Sbjct: 16 DYTTLTDVHLRKLREPREGMYIAESSKVLRRALAAGHQP-RSFFLAEKWLEDLDDVFKAH 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV +++I G +A P P + N+Q + VL+ + D N+G Sbjct: 75 PDVPVYIGKASLLEEITGFHLHRGAMAAMHRPAPVPLATLLANAQRIAVLEDIVDHTNVG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI RSA A D ++ + R + + G + +P+ R+ + D L ++ GF Sbjct: 135 AIFRSAAALGVDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLESWPDHLAQLKEQGFT 194 Query: 209 ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + K K+AL+LG EG G+ +T + M + +LNV Sbjct: 195 VAAMELTDNAVDLDDLAARKIPKLALVLGTEGAGMSEETLAAVDLAVKIPMRAGVDSLNV 254 Query: 266 SNAAAVALYITQ 277 + A+AVA + + Sbjct: 255 AAASAVAFWELR 266 >gi|216264577|ref|ZP_03436569.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 156a] gi|223888839|ref|ZP_03623430.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 64b] gi|224533577|ref|ZP_03674166.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi CA-11.2a] gi|225548612|ref|ZP_03769659.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 94a] gi|226320997|ref|ZP_03796542.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 29805] gi|215981050|gb|EEC21857.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 156a] gi|223885655|gb|EEF56754.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 64b] gi|224513250|gb|EEF83612.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi CA-11.2a] gi|225370642|gb|EEH00078.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 94a] gi|226233598|gb|EEH32334.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 29805] gi|312148435|gb|ADQ31094.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi JD1] Length = 246 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 112/240 (46%), Gaps = 15/240 (6%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 +++ ++ N ++ K+ + + + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG-FELYISKKSPKTKEIEQLAKTQNIKIIRINTNELDKIL-KNKDHRGF 64 Query: 115 ALETAPLLSPTLDAVRNSQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AL+ + + +++LD + DP N GAILR+A FS D Sbjct: 65 ALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDL 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +ITT++ S +++ + +++SGA +++ + ++N+ + + + ++GF + + Sbjct: 125 VITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDINK 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +I + KIALILG EGKG+ +E + + + G I +LNVS + + ++ + Sbjct: 185 IKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244 >gi|319790011|ref|YP_004151644.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio ammonificans HB-1] gi|317114513|gb|ADU97003.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio ammonificans HB-1] Length = 236 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 94/235 (40%), Gaps = 7/235 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + V A+ + L + +D++ G Sbjct: 2 VIYGRNAVEEAVRSGRNIEKVYLLHGKFFEPEFLSLLQERGVRFQWAKRPQLDRLAG-TG 60 Query: 110 VHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 HQG+ +P+ TL + V + L+ + +P N+GAI RS F G++ Sbjct: 61 KHQGVVAIISPIEYATLQELVEETVNRNSFFFALNGITEPQNLGAIARSVELFGGVGLLL 120 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 +R S + V K+++GAL H+ +R+ L + L G + + + Sbjct: 121 PQRGSAPINEVAVKASAGALLHLKVVRVDFLEEGLLAFKESGGN-VYALETGGRDIRDSQ 179 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +A ILG+EGKG+ + E A + G + +LNVS AA +A + Sbjct: 180 LKRPLAFILGSEGKGIDAELVELADLTVTIPTVGKLPSLNVSVAAGIAAWEIFRR 234 >gi|288799638|ref|ZP_06405097.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299 str. F0039] gi|288332886|gb|EFC71365.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299 str. F0039] Length = 267 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 85/247 (34%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + +++ S + AL L ++ P Sbjct: 20 LTEAQLRNKQHSDKGLFIAESPKVIEVALKKGFIPTALLCEERHIKGDAANIIAQNPSIP 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + T + I G L P L + + + ++D V D NIGAI R Sbjct: 80 IYTGTRDMLASITGYTLSRGVLCAMKRPTLPSVESICKTASRIAIVDGVVDTTNIGAIFR 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A DGI+ TK + + G++ IP+ + N + + Sbjct: 140 SAAALGIDGILLTKSSCDPFNRRAVGVSMGSIFLIPWTWLDNNISEVSQYGFKTVAMALR 199 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + K+A+ILG EG GL T + + M + +LNV+ A+A+A Sbjct: 200 HNSIDINDARLKAEKKLAIILGTEGDGLAESTILDTDYVVKIPMYNAVDSLNVAAASAIA 259 Query: 273 LYITQNH 279 + + Sbjct: 260 FWELCKN 266 >gi|152981475|ref|YP_001353733.1| RNA methyltransferase [Janthinobacterium sp. Marseille] gi|151281552|gb|ABR89962.1| RNA methyltransferase, TrmH family [Janthinobacterium sp. Marseille] Length = 264 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 95/260 (36%), Gaps = 7/260 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82 R++ YK+++ S+ + L GVH A L ++ L Sbjct: 8 SRDNPLYKELKHLAASSQARRKAGRTLLDGVHLCEAYLQKVGLPPLCIVGETAMLNGEVT 67 Query: 83 -WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 V P + + + L PT + S +L+ D V Sbjct: 68 VIVQQCSDSTTQCIVLPDALFHALSQVEHGVDLLFVIDTPEMPTPPRLTQSAVLL--DKV 125 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N G+I+RSA A + + + + S + ++ GA + +L+D L Sbjct: 126 QDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVLRAGMGAHFLLEIFEGVDLSDLLG- 184 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 I SS ++K L + +A + G EG+G+ AT + G I+ Sbjct: 185 --RADIPVIATSSHAEKQLYELDLRQPVAWLFGHEGQGVADDLLARATHRISIPHLGDIE 242 Query: 262 ALNVSNAAAVALYITQNHFA 281 +LNV+ ++AV + Sbjct: 243 SLNVAASSAVCFFEQLRQRT 262 >gi|260102409|ref|ZP_05752646.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM 20075] gi|260083777|gb|EEW67897.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM 20075] gi|323465877|gb|ADX69564.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus helveticus H10] Length = 250 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 111/246 (45%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101 F++G H L + KI ++ ++ VP + Sbjct: 3 SSKDFVFGRHAGLDYLKTQSADKINKVFLQHGIQEDFANQVYAICKKKRLVIQNVPKNKL 62 Query: 102 DKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSA 154 D++V HQGL L + L D L++LD + DPHN+G+ILRSA Sbjct: 63 DRLVD-GGNHQGLVLAISSFEYADLSKLLDQFDDEGKEPFLLMLDSIEDPHNLGSILRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A DGII KR++ ++V+AK+++GA++++P R++NL +++ G+ G Sbjct: 122 DATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWIFGTDM 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E K K L++G EGKG+ P ++ L M G +++LN S A V LY Sbjct: 182 AGTDYREWNAK-GKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLY 240 Query: 275 ITQNHF 280 N Sbjct: 241 QAYNSR 246 >gi|229817954|ref|ZP_04448236.1| hypothetical protein BIFANG_03241 [Bifidobacterium angulatum DSM 20098] gi|229784558|gb|EEP20672.1| hypothetical protein BIFANG_03241 [Bifidobacterium angulatum DSM 20098] Length = 290 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 92/275 (33%), Gaps = 27/275 (9%) Query: 26 NHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++ +++ + +++ + + G +V A+ S + + + Sbjct: 9 DNPKSDRVRRIAELTRTKGRRKNGRFLIEGPQSVREAVRYASDIVTDIYVAGDEDGIDSD 68 Query: 84 DAN--------LPHPFPVKTVPPQTIDKIVG--KEAVHQGLALETAPLLSPTLDA---VR 130 V T + ID I + + G + + ++ Sbjct: 69 VLADIAQRALDKSADLYVHTATREVIDHISPDAQGVIAVGDTDKLRSGMKAEVEQASSYS 128 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH---- 186 + V DP N G ++R+A A CD ++ + + +S +G+L H Sbjct: 129 RGMRVAAFWQVRDPGNAGTVIRAADAAGCDVVVFVDDCVDMLNPKVIRSTTGSLFHIPVI 188 Query: 187 --------IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 A + + L +E + D A++ G E + Sbjct: 189 AMGTNDFFDWMKEQGLDIWAADVYGTRKRKPERLPDVLDAMRGEEHRKDGYAVLFGNEAR 248 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 GL KT E + + M G ++LN++ +AA+ L Sbjct: 249 GLNGKTLEQCQRIVSIPMYGKAESLNLATSAAIIL 283 >gi|224024447|ref|ZP_03642813.1| hypothetical protein BACCOPRO_01172 [Bacteroides coprophilus DSM 18228] gi|224017669|gb|EEF75681.1| hypothetical protein BACCOPRO_01172 [Bacteroides coprophilus DSM 18228] Length = 250 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 80/255 (31%), Gaps = 15/255 (5%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K ++ + + G V L LL T L Sbjct: 6 KIKYIRSLELK-KYRKEEQVFIAEGHKLVGDLL--GHFPCRLLLGTDKWLNEHPLIEAEE 62 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V + + + + + LAL P L + LD V DP N+G Sbjct: 63 T----IEVSREELSRASLLKTPQEVLALFEIPHYEWDPKI-AERSLCLALDDVQDPGNLG 117 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F I + + + ++ GAL + + Sbjct: 118 TIIRIADWFGIHHIFCSNGCVDAFNPKTVQATMGALARVQLHYCDLPAFLQAQPKEVPVF 177 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264 L ++ E + +I+G EG G+ P+ ++ + ++LN Sbjct: 178 GTFLDGENLYAQE---LSTNGIIIMGNEGNGISPQVAQSVNRRLLIPNYPQGQTTSESLN 234 Query: 265 VSNAAAVALYITQNH 279 V+ A A+ + Sbjct: 235 VAVATAIVCAEFRRR 249 >gi|156743085|ref|YP_001433214.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus castenholzii DSM 13941] gi|156234413|gb|ABU59196.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus castenholzii DSM 13941] Length = 496 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 87/259 (33%), Gaps = 7/259 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ + G AL+ + L T L Sbjct: 226 RDPMVARLRDL-GNAAGRRARGQFLAEGPLLAFRALD--DLPVEDLFYTGELLRDPAGTV 282 Query: 86 NLPH----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 L P + + I + + L + +++ + + Sbjct: 283 LLRRAADLGVPAHRISEGLMGLITPTRPIPSVITAIWGQLRNVADYRPGRRAVILATEQI 342 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 N+P N+G LR+A A + +I + ++A GA+ IP ++L + + Sbjct: 343 NNPENLGMTLRTADAAGVEAVIVAGSGADPFHRECVRAARGAVGRIPIYTCADLPTWVGQ 402 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + G +G + + ++ L + +I+G E +GL T +S+ + M Sbjct: 403 ARARGIHVVGATGNVERTLYDADLPLPLMIIVGNETEGLTDATLAVCSSLVRIPMAPGQD 462 Query: 262 ALNVSNAAAVALYITQNHF 280 +LNV AA V LY Sbjct: 463 SLNVGVAAGVILYDIVRRR 481 >gi|309812593|ref|ZP_07706338.1| RNA methyltransferase, TrmH family, group 3 [Dermacoccus sp. Ellin185] gi|308433444|gb|EFP57331.1| RNA methyltransferase, TrmH family, group 3 [Dermacoccus sp. Ellin185] Length = 324 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 73/280 (26%), Positives = 117/280 (41%), Gaps = 20/280 (7%) Query: 20 YAKLRRNHRDYKKMQS----------FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 A+ R NH+ YK Q + + + G ++V AL Sbjct: 40 RAEERPNHKAYKSAQRSGAAKNAPNARRSSGARRDRTSSEIIAGRNSVLEALRVGVPAAT 99 Query: 70 QLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 + + R + P +D++ AVHQGLAL+ P Sbjct: 100 LYVASRIDSDDRVRETLKIAQEQGVAMLETPRGELDRLTD-GAVHQGLALQVPPYEYAHP 158 Query: 127 DAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 + + L++ LD + DP N+GAI+RS AF G++ +R S +A K+++ Sbjct: 159 SDLIDPELPGTPLVVALDGITDPRNLGAIVRSTAAFGGHGVVIPQRRSAGMTASAWKTSA 218 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGL 240 GA IP + SNLT AL++ GF IGL D L + + +++G+EGKGL Sbjct: 219 GAAARIPVAQASNLTAALKEFKKAGFFVIGLDMDGDVDLPGLELADRPLVVVVGSEGKGL 278 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ET + + M +++LN A +V LY + Sbjct: 279 SRLVSETCDQIVSVPMSSAVESLNAGIATSVTLYQVAVNR 318 >gi|119716688|ref|YP_923653.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614] gi|119537349|gb|ABL81966.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614] Length = 237 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 87/241 (36%), Gaps = 9/241 (3%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 ++ G V AL + +L AT A + A+L FP V + Sbjct: 2 RTERRLFLADGPKAVEGALAAD--VVVELFATPAAA---EQYADLLGGFPAALVDDGAMA 56 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + GL L + R S+LL + V DP N G ++R A A DG+ Sbjct: 57 GLSD-SVTPAGLVAVCRFLDDEPVVDARVSRLLAICADVRDPGNAGTVIRCADAVGGDGV 115 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + + +++ G+L H+ + + A+ S GF + L Sbjct: 116 VLAGNSVDPYNPKTVRASVGSLFHVRIGQERHPATAVSHARSAGFTVLAADGAGDVDLFD 175 Query: 223 EI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-H 279 A + G E GL + A + + G ++LN+S AAA+ LY + Sbjct: 176 ADELLAGPSAWLFGNEAWGLPEELAALADHRVRIPIYGRAESLNLSTAAALCLYASARVQ 235 Query: 280 F 280 Sbjct: 236 R 236 >gi|320011788|gb|ADW06638.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC 33331] Length = 279 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 89/247 (36%), Gaps = 11/247 (4%) Query: 45 QPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALARLDW--DANLPHPFPVKTVPP 98 + G V A + + +L AT A R DA V Sbjct: 28 KERRFIAEGPQAVREAAAHRGGDGEPTLTELFATVEAADRYADIVDAARAAGARVHLADG 87 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + + + + L+ VL HV DP N G +LR A A Sbjct: 88 DVLADVSQTVTPQGLIGVCRFLDSPFEEILAAKPTLVAVLAHVRDPGNAGTVLRCADAAG 147 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D ++ T + +++ G+L H+P + +A++ + G + + + Sbjct: 148 ADAVVLTDASVDLYNPKSVRASVGSLFHLPVAVGVPVEEAVRGLRDAGVRILAADGAGED 207 Query: 219 PLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L+ E A + G E GL +T+ A ++ + + G ++LN++ AAAV LY Sbjct: 208 DLDDELDAGTMGGPTAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 267 Query: 275 ITQN-HF 280 + Sbjct: 268 ASARAQR 274 >gi|160913562|ref|ZP_02076253.1| hypothetical protein EUBDOL_00038 [Eubacterium dolichum DSM 3991] gi|158434114|gb|EDP12403.1| hypothetical protein EUBDOL_00038 [Eubacterium dolichum DSM 3991] Length = 244 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 94/237 (39%), Gaps = 15/237 (6%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + G H + A+ + + +L + P V + Sbjct: 23 YRDSDRCFLVEGEHLLEEAIRA--KLLDCILVEEGHTYDTGAY-------PCYEVSSMIM 73 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K+ + P + +++LD V DP N+G ILRSA +F D Sbjct: 74 RKLSDSVS----GTWLIGVCHMPCPMDFVMGEKVILLDDVQDPGNVGTILRSAYSFGFDT 129 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +K + S + +S GAL H + ++L+ + ++ IG + ++ + Sbjct: 130 VVLSKHCADVYSDKVIRSTQGALFH-MQVIRTDLSQIIDQLKEKKIPVIGTALENASAMS 188 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 D++AL+ G EG G+ + ++ M ++LNV+ AA +A+Y + Sbjct: 189 TIEAVDRVALLFGNEGNGVSKELLAKCDETMYIEMH-AFESLNVAVAAGIAMYKFRR 244 >gi|218249262|ref|YP_002375025.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi ZS7] gi|226321825|ref|ZP_03797351.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi Bol26] gi|218164450|gb|ACK74511.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi ZS7] gi|226233014|gb|EEH31767.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi Bol26] Length = 246 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 112/240 (46%), Gaps = 15/240 (6%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 +++ ++ N ++ K+ + + + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG-FELYISKKSPKTKEIEQLAKTQNIKIIRINTNELDKIL-KNKDHRGF 64 Query: 115 ALETAPLLSPTLDAVRNSQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AL+ + + +++LD + DP N GAILR+A FS D Sbjct: 65 ALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDL 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +ITT++ S +++ + +++SGA +++ + ++N+ + + + ++GF + + Sbjct: 125 VITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQNINK 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +I + KIALILG EGKG+ +E + + + G I +LNVS + + ++ + Sbjct: 185 IKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244 >gi|30691669|ref|NP_195515.2| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] gi|26450142|dbj|BAC42190.1| unknown protein [Arabidopsis thaliana] gi|90093284|gb|ABD85155.1| At4g38020 [Arabidopsis thaliana] gi|332661464|gb|AEE86864.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] Length = 352 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 52/278 (18%), Positives = 101/278 (36%), Gaps = 27/278 (9%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSR----KIFQLLATKNALAR 80 + K Q S + ++ + G + + +I LL + A Sbjct: 74 NPFVKHCLKLRQSSSYRHAHGSVLVVGTIPIREVCMFQTNKQGMTTEIECLLLHEEAKIP 133 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----------AVR 130 ++ V ++ + + + E+V + + D Sbjct: 134 QGLESLSIRIVRVSSLVMKKLSGVQSTESVEAIALMRIPSSFTDLKDDKDIITDCNKWFP 193 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA------- 183 ++ ++VLD + DP N+G ++RSA+AF+ DG + +++ GA Sbjct: 194 SAHRVLVLDSIQDPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRASRGASFQLPIV 253 Query: 184 ---LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 H+ + L + Q + S Q + + LILG+EG GL Sbjct: 254 SGNWNHLKLLENEFQMKLLAGHPATTTQKLKPVSKLSVEFAQSLAEKPLCLILGSEGNGL 313 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ + + M G ++LNVS A + LY+ QN Sbjct: 314 SEQARKVC-VLVSIPMAGDFESLNVSVAGGIFLYMLQN 350 >gi|284043154|ref|YP_003393494.1| RNA methyltransferase, TrmH family, group 3 [Conexibacter woesei DSM 14684] gi|283947375|gb|ADB50119.1| RNA methyltransferase, TrmH family, group 3 [Conexibacter woesei DSM 14684] Length = 256 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 107/237 (45%), Gaps = 8/237 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDKIVG 106 LYG + V AL SR++ + AT +A W A + H V V + Sbjct: 21 ILYGRNAVHEALR-GSREVQHIWATAHA-VEEPWLAAVAHDASAVDVNVVADGGWIERRS 78 Query: 107 KEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 HQG+ + AP +D L++ LD + DP N+GAI R+A G++ Sbjct: 79 GSPDHQGVCAQVAPFRYAYVDELLAVEHPLIVALDEIQDPQNLGAIARTAECAGATGLVI 138 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 R S + + K+++GA+EH+P R NL D L G G D P Sbjct: 139 PARRSADVTPAVCKASAGAVEHLPIARARNLADFLGDARGVGAWVYGAEGDGGVPYTGVD 198 Query: 225 KNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + L+LG+EG+GLRP+ + ++ L + G I +LNVS AA+ LY Sbjct: 199 YSGPGVVLVLGSEGRGLRPRVAASCDALIALPLRGRIGSLNVSAAASALLYEIVRQR 255 >gi|84500909|ref|ZP_00999144.1| RNA methyltransferase, TrmH family, group 3 [Oceanicola batsensis HTCC2597] gi|84390976|gb|EAQ03394.1| RNA methyltransferase, TrmH family, group 3 [Oceanicola batsensis HTCC2597] Length = 265 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 137/247 (55%), Gaps = 11/247 (4%) Query: 31 KKMQSFNQKSRHTSQ--PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 KK + +K R E ++L+G+H V AL NP+R+ +L+ TKNA +L DA Sbjct: 4 KKPKWVVEKERGRKAAAEETVWLFGLHAVRDALMNPAREKLRLIVTKNAADKLA-DAIAA 62 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVND 143 + P+ + ++VHQG ALE PL + L +++LD V D Sbjct: 63 GGIEPEMADPRRFTAPLDPQSVHQGAALEVRPLDWGSVAERCLGDGVRPPRVVLLDRVTD 122 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GAILRSA F +I + ++ E+ LAK+ASGALE PY+R+ NL D + ++ Sbjct: 123 PHNVGAILRSAEVFGALAVIGMRHHAAPETGALAKTASGALERQPYLRVRNLADTIVELQ 182 Query: 204 SWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 S G+ +GL ++ LE + ++ +AL+LGAEG GLRPKT++T + + G Sbjct: 183 SMGYLVLGLDGEAGTELEDAVEGLRDRPVALVLGAEGPGLRPKTRDTCDRLVRIAFAGSF 242 Query: 261 KALNVSN 267 +LNVSN Sbjct: 243 GSLNVSN 249 >gi|219685096|ref|ZP_03539916.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii Far04] gi|219673192|gb|EED30211.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii Far04] Length = 246 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 110/240 (45%), Gaps = 15/240 (6%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 +++ ++ N ++ K++ + + + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG-FELYISKKSSKIKEIERLAKTQNIKIIRISINELDKIL-KSKDHRGF 64 Query: 115 ALETAPLLSPTLDAV-------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AL+ + + +++LD + DP N GAILR+A FS D Sbjct: 65 ALKLKLEKNKNEKTQTKDFENLLETFKKKEHAFILLLDEIEDPQNFGAILRTAEQFSIDL 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++TT++ S ++ + +++SGA +++ I ++N+ + + + GF + + Sbjct: 125 VVTTQKRSAKDNLTVLRTSSGASQYVKKITVTNINNTIYSLKKHGFWIYAGDIKGQDINK 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +I + KIALILG EGKG+ +E + + + G I +LNVS + + ++ + Sbjct: 185 IKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244 >gi|225552336|ref|ZP_03773276.1| RNA methyltransferase, TrmH family, group 3 [Borrelia sp. SV1] gi|225371334|gb|EEH00764.1| RNA methyltransferase, TrmH family, group 3 [Borrelia sp. SV1] Length = 246 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 112/240 (46%), Gaps = 15/240 (6%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 +++ ++ N ++ K+ + + + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG-FELYISKKSPKTKEIEQLAKTQNIKIIRINTNELDKIL-KNKDHRGF 64 Query: 115 ALETAPLLSPTLDAVRNSQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AL+ + + +++LD + DP N GAILR+A FS D Sbjct: 65 ALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDL 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +ITT++ S +++ + +++SGA +++ + ++N+ + + + ++GF + + Sbjct: 125 VITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYAGDIKGQDINK 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +I + KIALILG EGKG+ +E + + + G I +LNVS + + ++ + Sbjct: 185 IKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244 >gi|77405800|ref|ZP_00782884.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae H36B] gi|77408463|ref|ZP_00785201.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae COH1] gi|77172905|gb|EAO76036.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae COH1] gi|77175587|gb|EAO78372.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae H36B] Length = 229 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 99/236 (41%), Gaps = 12/236 (5%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + ++ + G H A ++ + + T+ A+ RL P V Sbjct: 3 QKKYRKSS--YLIEGWHLFEEAEKYGAQFLN-IFVTETAIDRLR------KPERAIVVTD 53 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + ++ + QG+ E A + D + L++ + V DP N+G ++R+A A + Sbjct: 54 DVLKELTDSQ-TPQGIVAEIAFQETRWTDIKKGRFLVL--EDVQDPGNLGTMVRTADAAN 110 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D + +++ + + +S G+ H+P R+ S+ Sbjct: 111 FDAVFLSQKSADLYNQKTLRSMQGSHFHLPVFRVEIEQFVNFCKAEGITMIATTLSEQSV 170 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K D ALI+G EG+G+ E A +AH+ MPG ++LNV+ AA V ++ Sbjct: 171 NYKNLPKYDYFALIMGNEGQGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIF 226 >gi|269792462|ref|YP_003317366.1| RNA methyltransferase, TrmH family, group 3 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100097|gb|ACZ19084.1| RNA methyltransferase, TrmH family, group 3 [Thermanaerovibrio acidaminovorans DSM 6589] Length = 256 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 115/245 (46%), Gaps = 13/245 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDK 103 + +YG + V + L + L++ + + + + P + V + +D+ Sbjct: 8 AGDDLVYGRNPVMSLLEGGGDCLKVLISRRRSDPVRERIVEICRARGIPFQEVDGKVLDR 67 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA---------VRNSQLLMVLDHVNDPHNIGAILRSA 154 +VG + HQG+ +P+ L+ + L+V+DHV DPHN+GA++R+A Sbjct: 68 MVG-TSSHQGVVARVSPVGILKLEDLYRLAGASDPVAAFALLVVDHVEDPHNLGAMIRTA 126 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF-QTIGLS 213 A ++ R + V+ K+++GA +P I + N++ A++++ +GL Sbjct: 127 EAAGFSAVLFPSRREALPTGVVVKASAGAALRVPLIMVGNVSQAIRRVKEDLGLWAVGLE 186 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + E +IAL++G+EGKGL + + M G +LNVS AA + + Sbjct: 187 AQGRASVFDERLPPRIALVVGSEGKGLSRVASAACDDILMIPMMGASGSLNVSVAAGIVM 246 Query: 274 YITQN 278 Y Sbjct: 247 YQWYQ 251 >gi|254461438|ref|ZP_05074854.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales bacterium HTCC2083] gi|206678027|gb|EDZ42514.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae bacterium HTCC2083] Length = 259 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 93/252 (36%), Positives = 142/252 (56%), Gaps = 9/252 (3%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 K ++ + + E ++L+G+H V AL NP R +L+ T+NA+ +L Sbjct: 5 KWVVKKEQDKKAADAETVWLFGLHAVRDALMNPERTKLKLVVTRNAMDKLSEAIAFSE-L 63 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHN 146 + P+ + + ++VHQG ALE PL L+ V ++LD V DPHN Sbjct: 64 EPEMCEPRKFNAPLDPQSVHQGAALEVKPLTWGRLEEVCIGGTAAVPRAVLLDRVTDPHN 123 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAILRSA F +I T R S E+ LAK+ASGALE PY+RI NL ++++ + G Sbjct: 124 VGAILRSAEVFGASAVIGTHRGSAPETGALAKTASGALERQPYLRIRNLAESIESLQKMG 183 Query: 207 FQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + IGL ++++ ++ ++ IAL++GAEG GLR KT++T ++ + G +L Sbjct: 184 YLVIGLDGEAEQTIDAYLEGKRDRPIALVMGAEGPGLREKTKDTVDALVKVEFAGAFGSL 243 Query: 264 NVSNAAAVALYI 275 NVSNAAAVALY Sbjct: 244 NVSNAAAVALYA 255 >gi|116670673|ref|YP_831606.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] gi|116610782|gb|ABK03506.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] Length = 269 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 100/267 (37%), Gaps = 8/267 (2%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 L+ + ++ DY ++ + + + AL + Sbjct: 5 HLQSADDPRVS----DYTRLTDVHLRKLREPAEGMYIAESSRVLRRALAAGHQP-RSFFL 59 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 + L LD PV ++ I G +A P P + N++ Sbjct: 60 AEKWLEDLDDVFEQFPDVPVYIGSAALLEDITGFHLHRGAMAAMQRPSPVPLPGLLANAR 119 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + VL+ + D N+GAI RSA A D ++ + R + + G + +P+ R+ Sbjct: 120 RVAVLEDIVDHTNVGAIFRSAAALGVDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLE 179 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATS 250 + L + GF + E+ DK+AL+LG EG G+ P+T Sbjct: 180 SWPGDLAVLREQGFTVAAMELTDDAVDVDELAARNLDKLALVLGTEGAGMSPETLSAVDL 239 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQ 277 + M + +LNV+ A+AVA + + Sbjct: 240 AVRIPMRAGVDSLNVAAASAVAFWELR 266 >gi|328462975|gb|EGF34783.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus MTCC 5463] Length = 250 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 111/246 (45%), Gaps = 13/246 (5%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101 F++G H L + KI ++ ++ VP + Sbjct: 3 SSKDFVFGRHAGLDYLKTQSADKINKVFLQHGIQEDFANQVYAICKKKRLVIQNVPKNKL 62 Query: 102 DKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSA 154 D++V HQGL L + L D L++LD + DPHN+G+ILRSA Sbjct: 63 DRLVD-GGNHQGLVLAISSFEYADLSKLLDQFDDEGKEPFLLILDSIEDPHNLGSILRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A DGII KR++ ++V+AK+++GA++++P R++NL +++ G+ G Sbjct: 122 DATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWIFGTDM 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E K K L++G EGKG+ P ++ L M G +++LN S A V LY Sbjct: 182 AGTDYREWNAK-GKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLY 240 Query: 275 ITQNHF 280 N Sbjct: 241 QAYNSR 246 >gi|224532773|ref|ZP_03673390.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi WI91-23] gi|224512391|gb|EEF82775.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi WI91-23] Length = 246 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 113/240 (47%), Gaps = 15/240 (6%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 +++ ++ N ++ K++ + + + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG-FELYISKKSSKTKEIEKLAKIQNIKITRINTNELDKIL-KNKDHRGF 64 Query: 115 ALETAPLLSPTLDAVRNSQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AL+ + + +++LD + DP N GAILR+A FS D Sbjct: 65 ALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDL 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +ITT++ S +++ + +++SGA +++ + ++N+ + + + ++GF + + Sbjct: 125 VITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDINK 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +I + KIALILG EGKG+ +E + + + G I +LNVS + + ++ + Sbjct: 185 IKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244 >gi|148726030|emb|CAN88076.1| novel protein similar to vertebrate mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) (MRM1) [Danio rerio] Length = 321 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 68/309 (22%), Positives = 120/309 (38%), Gaps = 39/309 (12%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFN------------QKSRHTSQPENL 49 N I K + + H++K + + ++Q +K +Q + Sbjct: 6 NEIHKSTKSQRKPSQAVHFSKTGK--KLSSELQKLRFEDLSESESSSIRKDSQPNQDKEF 63 Query: 50 -FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-----NLPHPFPVKTVPPQTIDK 103 ++GV AL R L D + +K V QT++K Sbjct: 64 EIVFGVAPCLLALTRGRRSASCLFVKSGEGPERDAILRVCQEAIRRGVQIKRVNKQTLEK 123 Query: 104 IVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + VHQGL L+ + +L+ L +VLD V DP N+GAILRSA Sbjct: 124 MCD-GKVHQGLCLQASCLGFIKEERPITSLEVKNQRPLWLVLDGVQDPMNLGAILRSAYY 182 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ-------T 209 D I+++ S + ++K+++G +E + SNL ++ G+Q Sbjct: 183 LGVDRIVSSINNSCPLTPTVSKASAGVMEVMDVFGCSNLKRMIKVKVEEGWQVVGTVGLE 242 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNV 265 G S + + L++G EG GL + ++ + + M +++LNV Sbjct: 243 EGSSQSNVLSCSDFKMSRPTLLLMGGEGDGLSSELRQLCDVLITIPPRRHMHPGVESLNV 302 Query: 266 SNAAAVALY 274 S A + L+ Sbjct: 303 SVATGILLH 311 >gi|157964809|ref|YP_001499633.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5] gi|157844585|gb|ABV85086.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5] Length = 256 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 5/242 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ D + L + V Sbjct: 17 QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIF---DTNKKLIGTRSYEIVNN 73 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K++ A +D + +LD + D NIGAI+RSA A Sbjct: 74 DILSKLLENHTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAAA 133 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F + II + SP+ES +AK+A G LE IP I+++NL + + GF IGL+ + Sbjct: 134 FDINAIILPQDNSPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSA 193 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ +DKI L+ G+E KG+R ET +A + + +++LNVSNAA++ + Sbjct: 194 NDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAASIIFHSL 253 Query: 277 QN 278 N Sbjct: 254 HN 255 >gi|239948322|ref|ZP_04700075.1| RNA methyltransferase, TrmH family, group 3 [Rickettsia endosymbiont of Ixodes scapularis] gi|239922598|gb|EER22622.1| RNA methyltransferase, TrmH family, group 3 [Rickettsia endosymbiont of Ixodes scapularis] Length = 240 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 5/238 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ D + L + V Sbjct: 2 QNKKLDSKNCYYMYGKHPVFSALNNPKRQIENILCTREIF---DTNKKLIGTRSYEIVNN 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K++ + A +D + +LD + D NIGAI+RSA A Sbjct: 59 DILSKLLENQIHQGIAAKVRPIFSYNLENIDIKNPKCKIAILDQITDTQNIGAIIRSAAA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F + II + SP+ES +AK+A G LE IP I+++NL + + GF IGL+ + Sbjct: 119 FDINAIILPQDNSPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ +DKIAL+ G+E KG+R +ET +A + + +++LNVSNAA++ + Sbjct: 179 NDYFTDKLISDKIALVFGSEDKGMRRLVEETCDYLAKIPISKRVESLNVSNAASIIFH 236 >gi|153807708|ref|ZP_01960376.1| hypothetical protein BACCAC_01990 [Bacteroides caccae ATCC 43185] gi|149129317|gb|EDM20531.1| hypothetical protein BACCAC_01990 [Bacteroides caccae ATCC 43185] Length = 268 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 89/236 (37%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + + ++R + ++ AL++ + L K+ + Sbjct: 17 FSTLTETQLRNRTEPGKGIFIVESPKVITRALDSGYEPLAILCEYKHIVGDAAEIIERCE 76 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + + G L P + R ++ ++V+D V D NIGA Sbjct: 77 NVPVYTGSRELLATLTGYVLTRGVLCAMRRPEPRSMEEVCREARRIVVIDSVVDATNIGA 136 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T+ + + + + GA+ +P+ ++ L K+ Sbjct: 137 IFRSAAALGIDAVLLTRNSCDPLNRRVVRVSMGAVFFVPWAWMNGSLSDLGKLGFRTAAM 196 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + K+A+++G EG+GL T A + + M + +LNV Sbjct: 197 ALTDDSIPIDNPALVNESKLAIVMGNEGEGLSHDTITEADYVVRIPMVHGVDSLNV 252 >gi|326316588|ref|YP_004234260.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373424|gb|ADX45693.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 264 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 93/252 (36%), Gaps = 12/252 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLD 82 R++ K ++ Q S + ++L G H AAL + + A + Sbjct: 10 SRDNAFVKDLRRLAQDSGAYRRQGRVWLEGDHLCRAALERGVQPAIGVYAESAWPAWEHE 69 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 W V + V + +P L A + +VLD + Sbjct: 70 WGPAAARNV----VLADALWSDVSGLESPARMGFVVPAPEAPVLQAGLPT---VVLDRLQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA AF + K + S + ++ GA ++ + Sbjct: 123 DAGNVGSILRSASAFGFRQVAALKGTAGLWSPKVLRAGMGAHF----ALHLVEGLSVDDI 178 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + + SS L + ILG EG+G+ Q+ AT + + PG ++ Sbjct: 179 DTLRLPLLATSSHGGDLLHRACLPWPCGWILGHEGQGVSEALQQRATHLIRIAQPGGEES 238 Query: 263 LNVSNAAAVALY 274 LNV AAA+ L+ Sbjct: 239 LNVGAAAAICLH 250 >gi|256850851|ref|ZP_05556240.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN] gi|260661062|ref|ZP_05861976.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN] gi|282934478|ref|ZP_06339733.1| rRNA methylase [Lactobacillus jensenii 208-1] gi|297205725|ref|ZP_06923120.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16] gi|256615913|gb|EEU21101.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN] gi|260547999|gb|EEX23975.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN] gi|281301425|gb|EFA93714.1| rRNA methylase [Lactobacillus jensenii 208-1] gi|297148851|gb|EFH29149.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16] Length = 255 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 53/278 (19%), Positives = 98/278 (35%), Gaps = 24/278 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ I + K ++ Q + G H V A Sbjct: 1 MQKITSTTNQTIK-------------------NLAKLNKKKYREQEGFYLIEGFHLVDEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 + + LLAT+ A +L +L + + + + + Sbjct: 42 FKSKLNFKY-LLATQAAFEKLSIQYHLDLTDKRLIQINERVAKHLSATTNSQDVFMVLKI 100 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 LL D + DP NIG I+R+A A +G++ ++ + + ++ Sbjct: 101 NQPKHFTFNFGKWILL---DSLADPGNIGTIIRTADAAGFNGVVLSENCADLYNPKTQRA 157 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 G+ HIP I+ L Q ++ + D K L K ++ALI+G E G Sbjct: 158 MQGSQFHIPIIKADLLKTIEQFKENYIPVYASVLDDEAKELPDFEKTKELALIIGNEANG 217 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A + + G ++LN + AA + +Y Sbjct: 218 VSGDAVNLADEKLFIPIKGQAESLNAAIAAGIMIYHFA 255 >gi|301320680|gb|ADK69323.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 244 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 91/240 (37%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG H V L + ++ L L+ V V +D+++ + Sbjct: 5 LIYGKHVVFELLKKHQNMVKEIWV--KDLKILNEFDLKKTKIKVNVVSENKLDQLLETQT 62 Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + + + L+++LD ++ +N GAI+RS + DGII Sbjct: 63 QHQGIIAQIKDFNYTPFNELISDLNKKEKSLVLILDQIHYSYNFGAIIRSCSLLNVDGII 122 Query: 164 T-TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 K+ S VL S+ A + + ++ + + + + + Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFDIKICKTNNLNNAIKILKNNNFWIYATNLNQNSTDMTK 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +K A+I+G E KG+ + + ++ I + N S A ++ + N+ K Sbjct: 183 IDFANKTAVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242 >gi|149201824|ref|ZP_01878798.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. TM1035] gi|149144872|gb|EDM32901.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. TM1035] Length = 258 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 83/239 (34%), Positives = 137/239 (57%), Gaps = 9/239 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++++ + E ++L+G+H V AL NP+R+ +L+ TKNA +L+ + V Sbjct: 10 KEQAKRAAASETVWLFGLHAVRDALENPAREKLRLIVTKNAADKLEAAIA-ASGITPEEV 68 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAIL 151 P+ + + +VHQG ALE PL L R + +++LD V DPHN+GAIL Sbjct: 69 DPRKFNAPLDPGSVHQGAALEVKPLDWGPMAEVCLGDGRTAPRVVLLDRVTDPHNVGAIL 128 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F +I + ++ E+ LAK+ASGALE PY+R+ NL DA+ ++ + G+ +G Sbjct: 129 RSAEVFGARAVIAPRHHAAPETGALAKTASGALERQPYLRVRNLADAIIELQAMGYTVLG 188 Query: 212 LSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L+ +++ +E ++ +AL+LGAEG GLR +T+E ++ + +LNVSN Sbjct: 189 LAGEAELTIEAALEGKRDRPVALVLGAEGPGLRERTREVCDALVRIEFASDFGSLNVSN 247 >gi|189501044|ref|YP_001960514.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides BS1] gi|189496485|gb|ACE05033.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides BS1] Length = 267 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 96/259 (37%), Gaps = 13/259 (5%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--IFQLLATKNALARLDWDAN 86 ++ QK ++ + G+ TVS +++ + LL K L+ + Sbjct: 13 LIRRFAKLLQK-KYRDREGLFLAEGLRTVSELMHHIPDAGYLIALLVEKEQLSHIPQSRR 71 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL---SPTLDAVRNSQLLMVLDHVND 143 + + ++ G + + + + +L++ LD V D Sbjct: 72 YKE--KIYLIDSDEARRLSGTSTAQGIVGIFSQQKRSAGEISSQEQHAGELVLALDDVQD 129 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ILR+A F ++ + + ++ +G++ + + + +L L+KM Sbjct: 130 PGNVGTILRTASWFGVSTVVCGPGTADRYNPKAIRAGAGSVFCLNHYSVGDLEKELEKMR 189 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----I 259 G+ I S Q ++ L++G E KG+ A + G Sbjct: 190 RAGYHIICSSLHGTDFRLQHAVPERTVLVIGNEAKGVSMSILRKADLQITIP-RGRKDAG 248 Query: 260 IKALNVSNAAAVALYITQN 278 +++LN + +A + L Sbjct: 249 VESLNAAVSAGILLSEFVR 267 >gi|325002579|ref|ZP_08123691.1| RNA methyltransferase, TrmH family, group 3 [Pseudonocardia sp. P1] Length = 266 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 97/245 (39%), Gaps = 11/245 (4%) Query: 46 PENLF-LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTI 101 + +YG V AL++P ++ +++ + A R A PV+ Q + Sbjct: 22 KDRFITVYGRKPVLEALSDPDLEVDKIVLADSVRGAGEREITAAARGRGVPVQRASAQRV 81 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAV 155 + G QG+ + L R ++VLD V +P N+G ILRSA Sbjct: 82 KVLAGNGRHDQGVLADVVAPRMAPLPVFLSDLGSRRPASVLVLDAVTNPSNVGMILRSAT 141 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A DG++ +R P+ ++ K AS + + + ++ Sbjct: 142 AAGLDGVLLPRRGVPAIDPLVIK-ASAGVAFAAPVLRCGTAAEGVDLMRDAGFSVFGLDT 200 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L ++AL+LG E GL +E + L M G +++LNV++A AVA Y Sbjct: 201 GSGSLLDAELPHRVALVLGNETDGLTEDVRERLDGILSLPMYGGVESLNVASAGAVAAYE 260 Query: 276 TQNHF 280 Sbjct: 261 LLRRR 265 >gi|154495177|ref|ZP_02034182.1| hypothetical protein PARMER_04226 [Parabacteroides merdae ATCC 43184] gi|154085727|gb|EDN84772.1| hypothetical protein PARMER_04226 [Parabacteroides merdae ATCC 43184] Length = 269 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 83/233 (35%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + ++R + ++ AL+ + L K+ P Sbjct: 20 LTEAQLRNRIEPDKGIFIVESPKVITRALDAGYEPLAILCEHKHITGDASDIIERCSNVP 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + + + G L P D + ++ ++V+D V D NIGAI R Sbjct: 80 VYTGERELLATLTGYVLTRGVLCAMRRPEPRGMEDVCQKARRIVVIDGVVDTTNIGAIFR 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D ++ T+ + + + G + +P+ + L ++ Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGSLGDLGRLGFRTAAMALT 199 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + ++A+++G EG GL +T A + + M + +LNV Sbjct: 200 DNSISIDNPVLATEPRLAIVMGTEGDGLSQETIAAADYVVRIPMSHGVDSLNV 252 >gi|327404354|ref|YP_004345192.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823] gi|327319862|gb|AEA44354.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823] Length = 242 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 92/248 (37%), Gaps = 15/248 (6%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K ++S +QK + + G V + + ++ ++ ++ + Sbjct: 10 KWVRSLHQK-KMRDLESIFIVEGEKLVLEGIQMGLSNLEMIITSEAFFDQIPASLH---- 64 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F TV + +++ V + L+ +VLD V DP N+G + Sbjct: 65 FKTFTVSTKELEQ-VSELKTPNKCLAIFKREKYTLLEKS----FTLVLDGVQDPGNMGTM 119 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR A F +I +K ++ + +S+ GA+ IP + + + Sbjct: 120 LRLADWFGVKQVICSKDTVDCYNSKVIQSSMGAIYRIPVHYLDLASYLKDNQQQKFGAML 179 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++ K LI+G EGKG+RP+ + + G ++LNV+ A A Sbjct: 180 HGTNYKK-----VSYPKDSILIMGNEGKGVRPEIEALFDVPVTIPRYGEAESLNVATATA 234 Query: 271 VALYITQN 278 + L Sbjct: 235 ILLAEIVQ 242 >gi|183221427|ref|YP_001839423.1| putative tRNA guanosine-2'-O-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911515|ref|YP_001963070.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776191|gb|ABZ94492.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779849|gb|ABZ98147.1| Putative tRNA guanosine-2'-O-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 285 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 49/272 (18%), Positives = 100/272 (36%), Gaps = 12/272 (4%) Query: 22 KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81 K+ + +++ + + SQ + +F+ G + L + L L+ Sbjct: 14 KVSVRNAEFQIISALRTNRTKRSQEKEVFVEGTEPIKQLLAARWKVTRILYRENVPLSSW 73 Query: 82 DWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQ-------GLALETAPLLSPTLDAVRNSQ 133 + +L V + ++ KE + + T + +N Sbjct: 74 AKEVLSLHKEAKQFEVKEELYLELSEKETPSELLITAKIKESELTIQSKKTEQQSNQNKP 133 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ D +D N G++LRSA AF D + + +S+ G L H + ++ Sbjct: 134 FYLLFDRPSDLGNFGSLLRSADAFQVDCVFVIGHSIDVYDPKVIRSSLGTLFHTKLVFVN 193 Query: 194 NLTDALQKMHSWGFQT----IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ + + +G S L + I LILG E KG+ + Q Sbjct: 194 EFESLVRFVQMEKKRNGLVVVGSDSSGDSNLREVSIQTPILLILGNEKKGMSVQLQSICD 253 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M G++ +LNVS A ++ L+ + Sbjct: 254 RIVKIPMLGVVNSLNVSCAGSILLWEVTRNRN 285 >gi|238650976|ref|YP_002916832.1| 23S rRNA Gm2251 methyltransferase [Rickettsia peacockii str. Rustic] gi|238625074|gb|ACR47780.1| 23S rRNA Gm2251 methyltransferase [Rickettsia peacockii str. Rustic] Length = 240 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 5/238 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ + V Sbjct: 2 QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIFETHKKLIGTRA---YEIVNN 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K++ + A +D + +LD + D NIGAI+RSA A Sbjct: 59 DILSKLLENQTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAAA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F + II + SP+ES +AK+A G LE IP I+++NL + + F IGL+ + Sbjct: 119 FDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHRFWIIGLTGSA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ +DK L+ G+E KG+R ET +A + + +++LNVSNAA++ + Sbjct: 179 NDYFTDKLISDKTVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAASILFH 236 >gi|42561476|ref|NP_975927.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492975|emb|CAE77569.1| rRNA Methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 244 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 92/240 (38%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG H V L + ++ L L+ V V +D+++ + Sbjct: 5 LIYGKHVVFELLKKHQNMVKEIWV--KDLKILNEFDLKKTKIKVNVVSENKLDQLLETQT 62 Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + + + L+++LD ++D +N GAI+RS + DGII Sbjct: 63 QHQGIIAQIKDFNYTPFNELISDLNKKEKSLVLILDQIHDSYNFGAIIRSCSLLNVDGII 122 Query: 164 T-TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 K+ S VL S+ A + + ++ + + + + + Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFDIKICKTNNLNNAIKILKNNNFWIYATNLNQNSTDMTK 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +K A+I+G E KG+ + + ++ I + N S A ++ + N+ K Sbjct: 183 IDFANKTAVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242 >gi|317472890|ref|ZP_07932196.1| SpoU rRNA methylase [Anaerostipes sp. 3_2_56FAA] gi|316899610|gb|EFV21618.1| SpoU rRNA methylase [Anaerostipes sp. 3_2_56FAA] Length = 228 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 89/229 (38%), Gaps = 7/229 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 G+ P + ++ + + L + P + V P+ +I E Sbjct: 2 AEGLRIFREI---PEEQRAKVFVSSDFLKLHGEEL---KGIPFEEVSPKVFREISDTETP 55 Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 L+L + + R+ +++L+++ DP N+G ++R+ GII ++ Sbjct: 56 QGILSLVKMKQSTLSEILKRSGSSILLLENLQDPGNLGTLIRTGEGAGVSGIIMSRDTVD 115 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + + +S G++ +P+ +L + ++ + + E + A Sbjct: 116 IYNPKVIRSTMGSIFRVPFTYTEDLAETVEYLRQQSVHVYAAHLNGTDYT-DESYDKISA 174 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++G EG GL + A + M G +++LN + A + +Y + Sbjct: 175 FLIGNEGNGLTDRIAALADKRIRIPMEGRVESLNAAMAGGLLMYEARRQ 223 >gi|224532019|ref|ZP_03672651.1| RNA methyltransferase, TrmH family, group 3 [Borrelia valaisiana VS116] gi|224511484|gb|EEF81890.1| RNA methyltransferase, TrmH family, group 3 [Borrelia valaisiana VS116] Length = 246 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 112/240 (46%), Gaps = 15/240 (6%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 +++ ++ N ++ K++ + ++ + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG-FELYISKKSSKTKEIEKLAKAQNIKIRRINTNELDKIL-KNKDHRGF 64 Query: 115 ALETAPLLSPTLDAVRNSQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AL+ + + +++LD + DP N GAILR+A FS D Sbjct: 65 ALKLKLEKNKNVKTQTKDFEHLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDL 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +ITT++ S +++ + +++SGA +++ I ++N+ + + + GF + + Sbjct: 125 VITTQKRSAKDNSTVLRTSSGASQYVKKITVANINNTINFLKKNGFWIYAGDVKGQDINK 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +I + KIALILG EG+G+ +E + + + G I +LNVS + + ++ + Sbjct: 185 IKINDRKIALILGNEGRGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244 >gi|315186657|gb|EFU20416.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta thermophila DSM 6578] Length = 241 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 11/240 (4%) Query: 47 ENLFLYGVHTVSAALNNP--SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 ++++ G V L +P ++ L T R + Q + + Sbjct: 2 RSVYITGKRAVETYLVDPGVKERVVCLYVTDPHHHRHFLSLAREAGIRSEVCSAQELSRY 61 Query: 105 VGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 VG H+G ALE L + + LL+ LDH+ DPHN+GAILRSA F Sbjct: 62 VG---THRGFALEVLRTFKEATLEDLCGQAQENALLVALDHLQDPHNVGAILRSADQFGA 118 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+I +R + ++A ++KS+SGA + + + + +P Sbjct: 119 LGVIIPERRAVKDAASISKSSSGADA-FVPVVVETNLRRALLHVKKAGFWVYGADMEGQP 177 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + ++ L+LGAEGKGL +E + + G + + NVS AA + +Y + Sbjct: 178 VHEVDLSGRVCLVLGAEGKGLSRLLREEVDLLVAVPAHGHVDSFNVSVAAGILMYEVRRQ 237 >gi|221218099|ref|ZP_03589565.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 72a] gi|221192047|gb|EEE18268.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 72a] Length = 246 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 113/240 (47%), Gaps = 15/240 (6%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 +++ ++ N ++ K++ + + + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG-FELYISKKSSKTKEIEKLAKIQNIKIIRINTNELDKIL-KNKDHRGF 64 Query: 115 ALETAPLLSPTLDAVRNSQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AL+ + + +++LD + DP N GAILR+A FS D Sbjct: 65 ALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDL 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +ITT++ S +++ + +++SGA +++ + ++N+ + + + ++GF + + Sbjct: 125 VITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDINK 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +I + KIALILG EGKG+ +E + + + G I +LNVS + + ++ + Sbjct: 185 IKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244 >gi|225549662|ref|ZP_03770628.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 118a] gi|225369939|gb|EEG99386.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi 118a] Length = 246 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 113/240 (47%), Gaps = 15/240 (6%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 +++ ++ N ++ K++ + + + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG-FELYISKKSSKTKEIEKLAKIQNIKIIRINANELDKIL-KNKDHRGF 64 Query: 115 ALETAPLLSPTLDAVRNSQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AL+ + + +++LD + DP N GAILR+A FS D Sbjct: 65 ALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDL 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +ITT++ S +++ + +++SGA +++ + ++N+ + + + ++GF + + Sbjct: 125 VITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDINK 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +I + KIALILG EGKG+ +E + + + G I +LNVS + + ++ + Sbjct: 185 IKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244 >gi|90407127|ref|ZP_01215315.1| RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3] gi|90311703|gb|EAS39800.1| RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3] Length = 247 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 92/243 (37%), Gaps = 9/243 (3%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 K+ ++ + + + G V+ L + I Q+ AT + + + + Sbjct: 8 KLIKSLEQKKQRKKQGLFIVQGEKNVAELLRSD-FVIEQVFATSTYINKNNTLLSTHQLV 66 Query: 92 P-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 P V + K+ + + L A + TL + + +L++VLD V DP N+G I Sbjct: 67 PLCTEVSSDELKKMGTLLSNNSVLV--VAKCKTATLPTIASQELILVLDQVGDPGNLGTI 124 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + I+ + + + + ++ G+ I + + + Sbjct: 125 IRVADWYGVKNIVCSPDCADFYNPKVIAASMGSFARINVSHTPLVEYLAIQEKPIFGAYL 184 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S+ + +++G+E G+ + + + + G ++LNV+ A Sbjct: 185 EGSNLHQCA-----LPKSAFIVMGSESHGISDELEHLISDKITIPNFGAAESLNVAMATG 239 Query: 271 VAL 273 + L Sbjct: 240 IIL 242 >gi|300362338|ref|ZP_07058514.1| RNA methyltransferase [Lactobacillus gasseri JV-V03] gi|300353329|gb|EFJ69201.1| RNA methyltransferase [Lactobacillus gasseri JV-V03] Length = 251 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 13/240 (5%) Query: 46 PENLFLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + F+YG ++ L N K+F + A + V+ P + Sbjct: 4 NNDEFVYGRYSGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKL 63 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSA 154 D++V E HQGL L AP LD +++LD + DPHN+G+ILR+ Sbjct: 64 DQMVNHE-NHQGLVLTVAPFEYADLDKLLDKFDQDGKDPFILMLDSIEDPHNLGSILRTC 122 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A D +I KR + ++V+AK+++GA++++P R++NL + + G+ G + Sbjct: 123 DATGVDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQITKMLKKRGYWIFGTAM 182 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + N K L++G EGKG+ P + + M G +++LN S A V LY Sbjct: 183 KGEDYRKWN-ANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241 >gi|149371617|ref|ZP_01891033.1| tRNA/rRNA methyltransferase, TrmH family protein [unidentified eubacterium SCB49] gi|149355244|gb|EDM43804.1| tRNA/rRNA methyltransferase, TrmH family protein [unidentified eubacterium SCB49] Length = 248 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 108/245 (44%), Gaps = 11/245 (4%) Query: 46 PENLFLYGVHTVSAALNNP--SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 ++ ++G++ V AL K++ N + VP + + K Sbjct: 3 KKDYTVFGIYPVKEALAAEIVFDKVYVQKDINNPKIEQIVADLEKLNVSISNVPEEKLYK 62 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ T+P+ L+ + L ++LD ++D N GAILR+A Sbjct: 63 LT--KGNHQGIVALTSPIEFHDLETVVEKTLETETTPLFLILDQISDVRNFGAILRTAEC 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I K+ S K+++GA+ +IP I++ ++ DA+ + G TI + S Sbjct: 121 TGVHAVIVQKKGGAPVSGDAVKTSAGAIFNIPIIKVDHIKDAIFYLQGSGVTTIAATEKS 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +K + + +A+++G+EG+G+ + A L + G I +LNVS A LY Sbjct: 181 EKTIYDQTLTTPVAIVMGSEGRGVSRSVLQLVDEKASLPVLGEINSLNVSVACGAVLYEI 240 Query: 277 QNHFA 281 Sbjct: 241 VRQRI 245 >gi|212716042|ref|ZP_03324170.1| hypothetical protein BIFCAT_00955 [Bifidobacterium catenulatum DSM 16992] gi|212661409|gb|EEB21984.1| hypothetical protein BIFCAT_00955 [Bifidobacterium catenulatum DSM 16992] Length = 288 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 89/267 (33%), Gaps = 22/267 (8%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL----LATKNALARLDWDA 85 Y + +++ + AL I L A D Sbjct: 17 YTNLTEIQLRNKLEPSKGLFIAESPKVIDRALAANREPISLLVEEPWIEGMAETFTLIDN 76 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV P+ + ++ G LA L + R ++ + V++++ D Sbjct: 77 RWGTDIPVYVASPEQLKQLTGYRLHRGALAAMKRWPLPSVEEVCRGARRIAVMENIVDHT 136 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA++RSA A D ++ T A+ + G + IP+ RI Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDRHYWPFTGM 196 Query: 206 GFQTIGLSSDSKKP------------------LEQEIKNDKIALILGAEGKGLRPKTQET 247 + +++ DK+ALI G EG GL T Sbjct: 197 QELHDLGFTTVAMALEDDSISLEELVRRLNNADDEKDHIDKLALIFGTEGDGLSHHTISR 256 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M + +LNV+ ++AVA Y Sbjct: 257 ADLTVKIPMSHGVDSLNVAASSAVAFY 283 >gi|124007486|ref|ZP_01692192.1| RNA methyltransferase, TrmH family [Microscilla marina ATCC 23134] gi|123987142|gb|EAY26891.1| RNA methyltransferase, TrmH family [Microscilla marina ATCC 23134] Length = 255 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 80/246 (32%), Gaps = 7/246 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 R YK + S K ++ Q + + G +V L + R + +L T + Sbjct: 9 RQYKLLHSLQVK-KYRKQHQAFLVEGEKSVVETLQSAYR-VSELYCTADFAQNYAPIIET 66 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V + K + + + + ++ +VLD + DP N+ Sbjct: 67 SA-TKVLVATANELKKGSHFQTNNS-CLAIVQLPEPTPIAPLAQNEYALVLDGIQDPGNL 124 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R A + I+ + + + S G+ + Sbjct: 125 GTIVRIADWYGIRSILCSPDTVDVYNPKVIASCMGSFLRVNIHYTDLEAYFPS---LAAP 181 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + G D E + ++LG E KG+R + G ++LNV+ Sbjct: 182 KVYGAFLDGANLHEWSFPKEAGYIVLGNESKGIRASMASHIQQKITIPRFGQAESLNVAM 241 Query: 268 AAAVAL 273 A A+ Sbjct: 242 ATAIIC 247 >gi|313665041|ref|YP_004046912.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma leachii PG50] gi|312949507|gb|ADR24103.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma leachii PG50] Length = 244 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG H V L + ++ L L+ + V +D+++ Sbjct: 5 LIYGKHVVYELLKKHKNMVKEIWV--KNLKLLNEFDLKNTKIKINVVSENKLDQLLKTNE 62 Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ E D + L++VLD ++DP+N GAI+RS + DGII Sbjct: 63 PHQGIIAEIKDFNYTPFDELINDLNTKEKSLVLVLDQIHDPYNFGAIIRSCSLLNVDGII 122 Query: 164 T-TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 K+ S VL S+ A + + ++ + + + + + Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFDIKISKTNNLNNAIKILKNNGFWIYATNLNQNSTDMTK 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +K +I+G E KG+ + + ++ I + N S A ++ + N+ K Sbjct: 183 TQFANKTVVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242 >gi|50365074|ref|YP_053499.1| rRNA methylase [Mesoplasma florum L1] gi|50363630|gb|AAT75615.1| rRNA methylase [Mesoplasma florum L1] Length = 251 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 102/280 (36%), Gaps = 31/280 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++KI K + + + + G+H V+ A Sbjct: 1 MEKITSTSNKKI------------------KDLIKLRDDKKFQTVENLFVIEGLHMVNEA 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + + +++ + F + +KI + A Sbjct: 43 IK--RNIVKTIFLEEKMFSKIYDI----NNFECVLISENVSNKISSTKTSQGIFATCI-- 94 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + +++LD + DP N+G ++RSA +F ++ + + + +S Sbjct: 95 ---LEDQKINMLENILILDQIQDPGNMGTLIRSAASFEFQTVVASNNSVSFYNPKVLRST 151 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGK 238 G L I I + + + + +D K ++Q N K ALI+G E K Sbjct: 152 QGNLFSINLINDDLIKTIDELKQNNYQIIGTVLNDETKFMKQIEFSKNQKYALIIGNEAK 211 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 G+ + + ++ M +++LN + A ++ +Y + Sbjct: 212 GISDELKPLIDINLNIEMSNEVESLNAAIAGSIIMYNIKK 251 >gi|300790280|ref|YP_003770571.1| tRNA/rRNA methyltransferase [Amycolatopsis mediterranei U32] gi|299799794|gb|ADJ50169.1| putative tRNA/rRNA methyltransferase [Amycolatopsis mediterranei U32] Length = 268 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 54/253 (21%), Positives = 100/253 (39%), Gaps = 5/253 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + + +++ + G VS L + + LL + A L D Sbjct: 16 DFRHLSTADRRPDRPGGRGFVIAEGTVVVSRLLASRY-PVRALLGVQRRFAELAGDLAGL 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P +T+ ++VG LA+ P + V + + VL+ V D N+G Sbjct: 75 -DVPQYVASAETMAEVVGFHLNRGILAVADRPAPLTVSEVVGGTGPIAVLEGVGDHENLG 133 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++ R+A A G++ S + + G + +P+ +++ L + + GF Sbjct: 134 SLFRNAAALGVGGVLLGPGCSDPLYRRSVRVSMGHVLRVPFGHLTDWPGGLDDLRARGFA 193 Query: 209 TIGLSSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + +E ++AL+ GAEG GL A + MP + +LN+ Sbjct: 194 VAAFTPRPGSIPLAALREHAPGRVALLFGAEGPGLTETALAAADHAVRIPMPAGVDSLNI 253 Query: 266 SNAAAVALYITQN 278 + AAAVA Y Sbjct: 254 ATAAAVAFYELAR 266 >gi|165933590|ref|YP_001650379.1| 23S rRNA Gm2251 methyltransferase [Rickettsia rickettsii str. Iowa] gi|165908677|gb|ABY72973.1| 23S rRNA Gm2251 methyltransferase [Rickettsia rickettsii str. Iowa] Length = 240 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 117/238 (49%), Gaps = 5/238 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ + V Sbjct: 2 QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIFETHKKLIGTRA---YEIVNN 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K++ + A +D + +LD + D NIGAI+RSA A Sbjct: 59 DILSKLLENQTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAAA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F + II + SP+E+ +AK+A G LE IP I+++NL + + GF IGL+ + Sbjct: 119 FDINAIILPQDNSPNENGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ +DKI L+ G+E KG+R ET +A + + +++LNVSNAA++ + Sbjct: 179 NDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAASILFH 236 >gi|120434752|ref|YP_860439.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117576902|emb|CAL65371.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 246 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 44/253 (17%), Positives = 94/253 (37%), Gaps = 21/253 (8%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S +QK + ++ + + G+ V LN+ + L N Sbjct: 6 QIKLIKSLSQK-KFRNKHKLFVVEGLKGVREFLNSDFELV-SLYVVDGEFEEHQQFLN-- 61 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + + + KI + + LA+ P+ + L +VLD V DP N+G Sbjct: 62 ------IIDQKELKKISFLKTPQKALAVFKIPVKRDL----KIGDLTVVLDGVRDPGNLG 111 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R F + +I + + A +D + + + Sbjct: 112 TIIRLCDWFGIENLICSLDTVDCYN----PKVVQASMGSLTRVEIFYSDLVNVLGAHKNI 167 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII---KALNV 265 + + + + + + K DK +++G E G+ + Q ++ + G I ++LNV Sbjct: 168 PVFGTMLNGENIYSKKKPDKALIVMGNEANGISEEIQALISNKITIPQFGEIQETESLNV 227 Query: 266 SNAAAVALYITQN 278 + A ++ L + Sbjct: 228 ATATSIILSEFRR 240 >gi|260906619|ref|ZP_05914941.1| rRNA methylase, putative, group 3 [Brevibacterium linens BL2] Length = 311 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 109/252 (43%), Gaps = 12/252 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTV 96 R + + G ++V AL P+ ++ + R + Sbjct: 59 RRRKKENGPNMVAGRNSVLEALREDVPATAMYVAGRIDSDDRVREAITLATKRGISMLEA 118 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGA 149 +D++ +A+HQG+AL+ P + LL+ LD + DP N+GA Sbjct: 119 SKPDLDRLTD-DAIHQGIALQIPPYDYAEPRDLLEVAADRAEAPLLVALDGITDPRNLGA 177 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+RSA AF G+I +R + S +A K+++GA I ++ NL A+ ++ Sbjct: 178 IVRSAAAFGGHGVIIPERRAASMTAAAWKTSAGAAARIKVAQVVNLARAIDELKKQNVFV 237 Query: 210 IGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GL D + L + D + +++G+EGKG+ + + + + ++LN A Sbjct: 238 VGLDMDGEVELPELTFSRDPLCIVVGSEGKGISRLIADKCDQIVSIPIAATTESLNAGIA 297 Query: 269 AAVALYITQNHF 280 AAV+LY Sbjct: 298 AAVSLYEVARTR 309 >gi|306834157|ref|ZP_07467277.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338] gi|304423730|gb|EFM26876.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338] Length = 247 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 10/229 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + + G H A + + + ++ R+ + V V P+ + ++ Sbjct: 28 SYLIEGWHLFEEAEKAGAEFLN-IFVLEDYADRVSHFSM------VTYVTPEILKELTDS 80 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + +A P L +VL+ V DP N+G ++R+A A DG++ +++ Sbjct: 81 KTPQGIIAELAMPSLPLE---NLKVGRYLVLEDVQDPGNVGTMIRTADAAGLDGVLISEK 137 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + + +S G+ H+P R + + + S + N Sbjct: 138 SADIYNQKTLRSMQGSHFHLPIWRTNVYEACQKLQNLDVPLIATTLSKESVSYKTVEHNG 197 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 AL++G EG G+ + A +AH+ MPG ++LNV+ A + L+ Sbjct: 198 NFALVMGNEGNGISDSMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 246 >gi|15594861|ref|NP_212650.1| rRNA methylase (yacO) [Borrelia burgdorferi B31] gi|3915369|sp|O51468|Y516_BORBU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase BB_0516 gi|2688440|gb|AAC66889.1| rRNA methylase (yacO) [Borrelia burgdorferi B31] Length = 228 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 105/224 (46%), Gaps = 14/224 (6%) Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 + K+ + + + +DKI+ K H+G AL+ + + Sbjct: 4 IYQKKSPKTKEIEQLAKTQNIKIIRINTNELDKIL-KNKDHRGFALKLKLEKNKNVKTQT 62 Query: 131 NSQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 +++LD + DP N GAILR+A FS D +ITT++ S +++ + Sbjct: 63 KDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVL 122 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +++SGA +++ + ++N+ + + + ++GF + + +I + KIALILG EG Sbjct: 123 RTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDINKIKINDKKIALILGNEG 182 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 KG+ +E + + + G I +LNVS + + ++ + Sbjct: 183 KGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 226 >gi|325963236|ref|YP_004241142.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3] gi|323469323|gb|ADX73008.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3] Length = 269 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 93/252 (36%), Gaps = 4/252 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY ++ + + + AL + + L L Sbjct: 16 DYTQLTDVHLRKLREPAEGMYIAESSRVLRRALAAGHQP-RSFFLAEKWLDDLQDVLGAY 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P +++I G +A P P D + ++ + VL+ + D N+G Sbjct: 75 PDVPAFIGSAALLEEITGFHLHRGAMAAMQRPAPVPLPDLLAGARRVAVLEDIVDHTNVG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI RSA A D ++ + R + + G + +P+ R+S+ L + GF Sbjct: 135 AIFRSAAALDIDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLSSWPQDLYLLKEHGFT 194 Query: 209 TIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 L + +K+AL+LG EG G+ +T + M + +LNV Sbjct: 195 VAALELTADARDVDAVAAQNPEKLALVLGTEGAGMSAETLAAVDLAVKIPMRNGVDSLNV 254 Query: 266 SNAAAVALYITQ 277 + A+AVA + + Sbjct: 255 AAASAVAFWELR 266 >gi|298246477|ref|ZP_06970283.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM 44963] gi|297553958|gb|EFH87823.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM 44963] Length = 270 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 97/259 (37%), Gaps = 7/259 (2%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---- 80 +++ ++ + ++H + + L G+ + AAL + L L Sbjct: 12 QHNIHVRQYLALKNNTKHNPEH-LITLEGLGPIQAALEAGLE-LSCLFVCPERLRGGDGM 69 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 + + + V + + +V E A+ + R L++LD Sbjct: 70 ALIELAITRKIHLYQVSEKVLGSMVDWEGPDGLAAMVRLRRYDLSHLQPRQKGTLLILDG 129 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + P NIG ++RSA GII T+ + AS I S++ A Sbjct: 130 LQIPGNIGTVIRSADGAGAHGIIITQ-SRQRLTHPKLVRASMGSLFALPIVESDVETAYA 188 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + +G+Q + S ++ Q + + A+++G E +G+ + M G Sbjct: 189 WLKRYGYQVVTTSPRARVSFRQARYSTRTAIVMGNEREGVSEDWFARHDLSVSIPMHGRA 248 Query: 261 KALNVSNAAAVALYITQNH 279 +LNV NAA + LY + Sbjct: 249 DSLNVGNAAVLMLYEVLHQ 267 >gi|295425288|ref|ZP_06817991.1| TrmH family RNA methyltransferase [Lactobacillus amylolyticus DSM 11664] gi|295065064|gb|EFG55969.1| TrmH family RNA methyltransferase [Lactobacillus amylolyticus DSM 11664] Length = 254 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 87/236 (36%), Gaps = 4/236 (1%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + + G H L + I+ LL T AL + + V + Sbjct: 23 YREETGLYLIEGFHLFEETLKANRKFIY-LLGTDEALNKAEEAGVSLDAKNVILINKAIA 81 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + + ++ D N ++LD++ DP N+G I+R+A A +G Sbjct: 82 RHLSSTKNSQEIF---AVLKIAQPKDFSFNYGKWVLLDNLADPGNVGTIIRTADAAGFNG 138 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ + + ++ G+ HI I Q S + + K L Sbjct: 139 VVLSPESVDLYNPKTQRAMQGSQFHIDIIIKDLTDVITQLEASDIPVYASMLDKTAKKLP 198 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K ++ L++G E G+ + + ++ + G ++LN + AA + +Y Sbjct: 199 DFEKVAQLGLVIGNEAHGVSDFIANLSDTKLYIPIFGQAESLNAAVAAGIMIYHFA 254 >gi|54022618|ref|YP_116860.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] gi|54014126|dbj|BAD55496.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] Length = 267 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 57/251 (22%), Positives = 101/251 (40%), Gaps = 3/251 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + +++ + GV V L++ LL +L D Sbjct: 17 DFRDLSDADRRPDLPGGKGLVIAEGVVVVQRMLDSRFTP-SALLGVARRYDQLAADLA-A 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + + +IVG LA+ P + V ++ + VL+ VND N+G Sbjct: 75 VDVPYYRTSAEVMAEIVGFHLNRGVLAVARRPPELSMAEVVARARTVAVLEGVNDHENLG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++ R+A D ++ R S + + G + +P+ R+ D L + GFQ Sbjct: 135 SMFRNAAGLGVDAVLFGDRCSDPLYRRSVRVSMGHVLRVPFARVPAWPDGLATLREHGFQ 194 Query: 209 -TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + L + +++AL+LGAEG GL + A + M +LNV+ Sbjct: 195 LIAMTPDPAARNLASAMTGERVALLLGAEGPGLTAEAMRACDVRARIPMTPGTDSLNVAT 254 Query: 268 AAAVALYITQN 278 AAA+A Y Sbjct: 255 AAAMAFYERVR 265 >gi|242038529|ref|XP_002466659.1| hypothetical protein SORBIDRAFT_01g011760 [Sorghum bicolor] gi|241920513|gb|EER93657.1| hypothetical protein SORBIDRAFT_01g011760 [Sorghum bicolor] Length = 345 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 53/273 (19%), Positives = 96/273 (35%), Gaps = 26/273 (9%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K + + L L G+ + I LL +A Sbjct: 66 NPLVKHCVKLRLSAAYRRSCRRLLLVGLAPILEVCRFELDAIDYLLLMDGV---EVPEAL 122 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------------SQL 134 V V + K+ G ++V A+ + + D + + Sbjct: 123 REFSGDVVHVSAAVMKKVSGMQSVDSTEAIAVMHMPNHFRDLGSHEDGDALDGLLSYPKR 182 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD + DP N+G ++RSA AF DG+ + ++A GA +P + + Sbjct: 183 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGTW 242 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEI----------KNDKIALILGAEGKGLRPKT 244 G S + N+ + L+LG+EG GL +T Sbjct: 243 HDLHALMTKYGMKMMAGHPESSSDASKGIYSLSKELADSLLNESLCLVLGSEGNGLSAET 302 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + ++ M G ++LNVS A + L++ Q Sbjct: 303 LQAC-ELVNIPMEGTFESLNVSVAGGIFLFMLQ 334 >gi|229820868|ref|YP_002882394.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM 12333] gi|229566781|gb|ACQ80632.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM 12333] Length = 254 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 99/247 (40%), Gaps = 5/247 (2%) Query: 34 QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP- 92 ++ +S + + G V A+ + ++ L T+ AL R + Sbjct: 5 RALAGRSS-RQRHGRFLVEGPQAVREAVLFAASRLRDLYVTRAALERYPEIVDAARAADR 63 Query: 93 -VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 V V + + ++ G + L + R +L+ V + DP N G ++ Sbjct: 64 FVHPVTDEVMARLSGDAQGIIAVVDAAEHSLDDVVS--RAPRLVAVCAQIRDPGNAGTVI 121 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A A D ++ T + S + +S++G+L H+P + L +A+ + S + Sbjct: 122 RAADAAGADAVVLTTGSVEATSPKVVRSSAGSLFHLPVVTGVTLQEAVAALRSAHLAVLA 181 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + +E A + G E +GL A ++ + + G ++LNV+ AA V Sbjct: 182 ADASGTTDVETAPLAAPSAWVFGTEAQGLTADELALADAVVRVPLRGHAESLNVAMAATV 241 Query: 272 ALYITQN 278 LY + Sbjct: 242 CLYASSR 248 >gi|15892932|ref|NP_360646.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7] gi|15620124|gb|AAL03547.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7] Length = 240 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 120/238 (50%), Gaps = 5/238 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ + + L + V Sbjct: 2 QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIF---ETNKKLIGTRAYEIVNN 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K++ + A +D + +LD + D NIGAI+RSA A Sbjct: 59 DILSKLLENQTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAAA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F + II + SP+ES +AK+A G LE IP I+++NL + + GF IGL+ + Sbjct: 119 FDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ +DKI L+ G+E KG+R ET +A + + +++LNVSNAA++ + Sbjct: 179 NDYFTNKLISDKIVLVFGSEDKGIRRLVVETCDYLAKIPISQRVESLNVSNAASIIFH 236 >gi|253569710|ref|ZP_04847119.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251840091|gb|EES68173.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 266 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 85/233 (36%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + ++R + + AL+ + L K+ P Sbjct: 20 LTEAQLRNRIEPDKGIFIVESPKVIERALDAGYEPLAILCEHKHITGDASDIIERCGNVP 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + + + G L P++ + R ++ ++V+D V D NIGAI R Sbjct: 80 VYTGSRELLATLTGYVLTRGVLCAMRRPVVRSMAEVCREARRIVVIDGVVDTTNIGAIFR 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D ++ T+ + + + G + +P+ + L K+ Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGSLSDLGKLGFRTAAMALT 199 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + ++A+++G EG GL P+T A + + M + +LNV Sbjct: 200 DNSVSIDDPVLATEPRLAIVMGTEGDGLSPETIAEADYVVRIPMSHGVDSLNV 252 >gi|294155831|ref|YP_003560215.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145] gi|291600376|gb|ADE19872.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145] Length = 233 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 6/225 (2%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G ++V AL N LL +N FPV+ V D++ + Sbjct: 8 GKNSVLDALQNNWPIQKVLLLHENNKH-----LFKNVNFPVEVVRRDKFDELTNENHQGF 62 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 ++ + N +L++VLDH+ DPHN+GA++RSA A II + S Sbjct: 63 IALIKEINYDNLNSLINDNPKLVLVLDHIQDPHNLGAVIRSANAAGVKHIILPRDRSAEI 122 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 ++ + K +SG I +IR+++++ + ++ + + K Q K L Sbjct: 123 NSTVIKVSSGGFIGIKFIRVNSISATITWLKNNGFWVFSSALDKNSKKHNQINYPYKSVL 182 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++G EG G+ T ++ G +++LNVS A + L+ Sbjct: 183 VVGNEGSGVSKSTLNVCDETIYIEQFGSVQSLNVSVATGILLFEM 227 >gi|161506928|ref|YP_001576882.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus DPC 4571] gi|160347917|gb|ABX26591.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus DPC 4571] Length = 250 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 111/244 (45%), Gaps = 13/244 (5%) Query: 46 PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101 F++G H L + KI ++ ++ VP + Sbjct: 3 SSKDFVFGRHAGLDYLKTQSADKINKVFLQHGIQEDFANQVYAICKKKRLVIQNVPKNKL 62 Query: 102 DKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSA 154 D++V HQGL L + L D L++LD + DPHN+G+ILRSA Sbjct: 63 DRLVD-GGNHQGLVLAISSFEYADLSKLLDQFDDEGKEPFLLMLDSIEDPHNLGSILRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A DGII KR++ ++V+AK+++GA++++P R++NL +++ G+ G Sbjct: 122 DATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWIFGTDM 181 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E K K L++G EGKG+ P ++ L M G +++LN S A V LY Sbjct: 182 AGTDYREWNAK-GKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLY 240 Query: 275 ITQN 278 N Sbjct: 241 QAYN 244 >gi|258655031|ref|YP_003204187.1| RNA methyltransferase, TrmH family, group 3 [Nakamurella multipartita DSM 44233] gi|258558256|gb|ACV81198.1| RNA methyltransferase, TrmH family, group 3 [Nakamurella multipartita DSM 44233] Length = 326 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 59/257 (22%), Positives = 101/257 (39%), Gaps = 15/257 (5%) Query: 37 NQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL----PHPF 91 + + + E + G + V AL L + Sbjct: 64 DSRPTTRPRGELPETVVGRNPVVEALRAG-VPATALYVAGGLATDERIAEAITGAAERGI 122 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDP 144 P V +D++ G A+HQG+AL P + + L++ +D V DP Sbjct: 123 PQLDVSRPELDRLTG-NAIHQGVALVVPPYQYAHPEDLLSRARDSGRAALIVAVDGVTDP 181 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GAI+RSA AF G++ +R S +A ++++G + R +NL L+ + Sbjct: 182 RNLGAIVRSAAAFGAHGVVVPERRSAGMTASAWRTSAGTAARLRVARCTNLVRTLKDYAA 241 Query: 205 WGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G GL +D + + L++G+EG+GL T+ + M +++L Sbjct: 242 QGLMIAGLDADGTTDTDSFELATSPLVLVVGSEGRGLARLTRTVCDVTVSIPMARSVESL 301 Query: 264 NVSNAAAVALYITQNHF 280 N S AA V L Sbjct: 302 NASVAAGVVLAEVARRR 318 >gi|120610518|ref|YP_970196.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1] gi|120588982|gb|ABM32422.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1] Length = 260 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 57/255 (22%), Positives = 95/255 (37%), Gaps = 12/255 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLD 82 R++ K ++ Q S + ++L G H AAL + + A + Sbjct: 10 SRDNAFVKDLRRLAQDSGAYRRQGRVWLEGDHLCRAALERGVQPAIGVYAESAWPEWERE 69 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 W A V + V + +P L A + +VLD + Sbjct: 70 WGAAAARNV----VLADALWADVSGLESPARMGFVVPVPEAPVLQAGLPT---VVLDRLQ 122 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D N+G+ILRSA AF + K + S + ++ GA A+ + Sbjct: 123 DAGNVGSILRSASAFGFRQVAALKGTAGLWSPKVLRAGMGAHF----ALHLVEGLAVDDI 178 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + + SS L + ILG EG+G+ Q+ AT + + PG ++ Sbjct: 179 DALALPLLATSSHGGDLLHRARLPWPCGWILGHEGQGVSEALQQRATHLIRIAQPGGEES 238 Query: 263 LNVSNAAAVALYITQ 277 LNV AAA+ L+ + Sbjct: 239 LNVGAAAAICLHASA 253 >gi|118468977|ref|YP_888083.1| RNA methyltransferase, TrmH family protein [Mycobacterium smegmatis str. MC2 155] gi|118170264|gb|ABK71160.1| RNA methyltransferase, TrmH family protein [Mycobacterium smegmatis str. MC2 155] Length = 252 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 95/245 (38%), Gaps = 10/245 (4%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + G + V AAL + ++ AT+ AL R L PV V + Sbjct: 13 RRRAARFLAEGPNLVEAALRRG--LVSEVFATEAALDRFG---ALLADAPVTPVTERAAK 67 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + +A+ P +S + L+ V +++P N G ++R A A + Sbjct: 68 ALSDTVTPVGLVAVCRLPEVSLDDVLAGPAGLIAVPVQLSEPGNAGTLIRVADAMGAAAV 127 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH----SWGFQTIGLSSDSKK 218 + ++ ++++G++ IP I + +Q++ T+ +D Sbjct: 128 VLAGNSVDPYNSKCLRASAGSIFSIPVISDPDEARVVQRLRDAGLRVLATTVDGEADLDD 187 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + + A + G E GL A + MPG ++LN+++AA++ LY + Sbjct: 188 PDLEAELTEPTAWLFGPEAHGLSTDLAAMAHRRVQIPMPGHAESLNIASAASICLYQSAR 247 Query: 279 -HFAK 282 + Sbjct: 248 AQRRR 252 >gi|17945288|gb|AAL48701.1| RE14730p [Drosophila melanogaster] Length = 386 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 93/293 (31%), Gaps = 28/293 (9%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + + +L + + + + + + + G + AL + L + K+ Sbjct: 87 NLEFVRLTLQDPLTSTLLTTVRSRKRRDKNRQIIVEGRRLIQEALQCGLKMEVLLFSQKD 146 Query: 77 ALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 LA + + + + VP + +A+ P + Q Sbjct: 147 QLALVKEEVGVAQVETGTKIYKVPQHDLKTWSSLVTPPGLMAIFDRPSDKGLEKNLAEQQ 206 Query: 134 LL--------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L +V D++ +P+N+G+I+R+ A C ++ T + + G Sbjct: 207 RLGSQPFPITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQF 266 Query: 186 HIPYIRISNLT-----------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 +P D + Q ++ + + + LI+G Sbjct: 267 RVPIRDDVTWDELALTIPPEAADDCHVFIAETNQRKRENNQTIDYADIKGLGAHNLLIIG 326 Query: 235 AEGKGLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 E G+ + ++ + I +LNV++A + L+ + Sbjct: 327 GESHGVSEEAYRFLNLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRRKLI 379 >gi|24666840|ref|NP_649130.2| CG14100 [Drosophila melanogaster] gi|74871275|sp|Q9VW14|RMTL1_DROME RecName: Full=RNA methyltransferase-like protein 1 homolog gi|7293773|gb|AAF49141.1| CG14100 [Drosophila melanogaster] Length = 407 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 93/293 (31%), Gaps = 28/293 (9%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + + +L + + + + + + + G + AL + L + K+ Sbjct: 108 NLEFVRLTLQDPLTSTLLTTVRSRKRRDKNRQIIVEGRRLIQEALQCGLKMEVLLFSQKD 167 Query: 77 ALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 LA + + + + VP + +A+ P + Q Sbjct: 168 QLALVKEEVGVAQVETGTKIYKVPQHDLKTWSSLVTPPGLMAIFDRPSDKGLEKNLAEQQ 227 Query: 134 LL--------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L +V D++ +P+N+G+I+R+ A C ++ T + + G Sbjct: 228 RLGSQPFPITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQF 287 Query: 186 HIPYIRISNLT-----------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 +P D + Q ++ + + + LI+G Sbjct: 288 RVPIRDDVTWDELALTIPPEAADDCHVFIAETNQRKRENNQTIDYADIKGLGAHNLLIIG 347 Query: 235 AEGKGLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 E G+ + ++ + I +LNV++A + L+ + Sbjct: 348 GESHGVSEEAYRFLNLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRRKLI 400 >gi|192359318|ref|YP_001982265.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107] gi|190685483|gb|ACE83161.1| RNA methyltransferase, TrmH family [Cellvibrio japonicus Ueda107] Length = 259 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 9/245 (3%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVK 94 K++ + +YG TV AL + I++L + D + Sbjct: 11 KAKKRFFDSLMTIYGRKTVLEALQEKAVSIYRLHLANSNKRAEILDQIIELAKLKGADII 70 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGA 149 + +I + QG+A + T + +N+ L+ LD + +P N+G Sbjct: 71 YHERNALSRISKNASQDQGVAADLQLPGYQTYEQFLATPPKNNYRLLALDGITNPQNLGM 130 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+RSA A + DGI+ + + ++ K+++G L P +R NL DAL+ G Sbjct: 131 IIRSACAGNIDGILLPLKGAAQIDPLVIKASAGTLFRAPILRCQNLVDALKDFSRHGASL 190 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 LSS + L +LG E G+ + T + M +++LNV+ A Sbjct: 191 CALSSHAHHNLSGFRPEGASIYVLGNETHGVSDPVFQLCTEKIKIPMNNGVESLNVAVTA 250 Query: 270 AVALY 274 A+ + Sbjct: 251 ALIAF 255 >gi|311742538|ref|ZP_07716347.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272] gi|311314166|gb|EFQ84074.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272] Length = 270 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 102/250 (40%), Gaps = 3/250 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY +++ + + R ++ G V A+ + L+A + D Sbjct: 17 DYTELRDVSLRRRLETERGLFIAEGEKVVRRAVESGHAPRSFLMAPRWIDG--LGDVIDG 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + I+ + G LA P P + ++ ++VL+ + D N+G Sbjct: 75 TDAPCYVLEESVIEHLTGFHVHRGALAALERPPARPAATVLAGARRVVVLEDLVDHTNVG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGF 207 AI RSA A D ++ + R + K + GA+ +P+ R+ + + + Sbjct: 135 AIFRSAAALGWDAVLLSPRCADPLYRRSIKVSMGAVFRLPWARVDDWASTPELLADAGFT 194 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + P+++ + +AL++G+EG GL + + A + M I +LNV+ Sbjct: 195 AVAMTLGEGAVPIDEVDTDRPLALVVGSEGHGLTRHWESASPVRATIPMAEDIDSLNVAA 254 Query: 268 AAAVALYITQ 277 + AVA + + Sbjct: 255 SVAVACWQLR 264 >gi|88802138|ref|ZP_01117666.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii 23-P] gi|88782796|gb|EAR13973.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii 23-P] Length = 243 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 95/251 (37%), Gaps = 21/251 (8%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K + S +QK ++ + G+ V+ L + + + T L Sbjct: 9 KLITSLSQK-KYRQKHNLFIAEGIKVVNELLQSDFE-VALIFCTNEFKTSLP-------K 59 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + V ++KI ++ ++ L+L P ++NS L++ LD +NDP N+G I Sbjct: 60 AKIVRVSETELNKISSLKSPNKVLSLF----KIPEDKPIQNSGLILALDAINDPGNLGTI 115 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R F +I +K + + +++ G+L I + + + Sbjct: 116 IRLCDWFGISQLICSKDTVDCYNQKVVQASMGSLTRISIQYLDLKNYLDKSPLPTFIADM 175 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNVSN 267 + K + + L++G E G+ + + + G ++LNV+ Sbjct: 176 NGENIYKTNV-----PKEGILVMGNEANGVSEEIKNQVQHKISIPRFGETQKTESLNVAM 230 Query: 268 AAAVALYITQN 278 A A+ + + Sbjct: 231 ATAILISEFKR 241 >gi|269837622|ref|YP_003319850.1| RNA methyltransferase, TrmH family, group 3 [Sphaerobacter thermophilus DSM 20745] gi|269786885|gb|ACZ39028.1| RNA methyltransferase, TrmH family, group 3 [Sphaerobacter thermophilus DSM 20745] Length = 252 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 8/246 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPP 98 LYG + V AL +A +A A PVK +P Sbjct: 2 RERPRGTELLYGRNAVMEALRGRRSLRRLFVAEGSARQPRVAAIIQAAEKRRLPVKHLPQ 61 Query: 99 QTIDKIVGKEAVHQGLALETAPLLS---PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + + +++ + HQG+ALET P L + ++ LDH+ DP N+ ++R+A Sbjct: 62 RDLAEML-PDVNHQGVALETGPYPYVGFDDLLRQAEGRPILALDHIQDPQNLATLMRTAE 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A G++ R + + + +++GA+EH+ ++NL AL++ G+ + L + Sbjct: 121 AVGVGGLLLPDRRAAGVTPAVVNASAGAVEHLRVALVANLGRALEECQEAGYWVVALEAG 180 Query: 216 SKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + L++G+EGKG+ P A L M G + +LN + A ++ALY Sbjct: 181 PEAQTLFTADLPEPTVLVVGSEGKGMAPTLLRRADVQVALPMQGRVDSLNAAVAGSIALY 240 Query: 275 ITQNHF 280 Sbjct: 241 ELLRRR 246 >gi|283455940|ref|YP_003360504.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1] gi|283102574|gb|ADB09680.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1] Length = 288 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 90/267 (33%), Gaps = 22/267 (8%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL----LATKNALARLDWDA 85 Y + ++R + AL + I L + + D Sbjct: 17 YTNLTEIQLRNRLEPSKGLFIAESPKVIDRALASGREPISLLVEEPWIDGMSRTFVCIDE 76 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + PV P+ + ++ G LA L + R ++ + V++++ D Sbjct: 77 HWGGDIPVYVASPEQLKRLTGYRLHRGALAAMRRWTLPSVEEVCRGARRIAVMENIVDHT 136 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA++RSA A D ++ T A+ + G + IP+ RI Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHYWPFTGM 196 Query: 206 GFQTIGLSSDSKKP------------------LEQEIKNDKIALILGAEGKGLRPKTQET 247 + + D++ALI G EG GL T Sbjct: 197 RELHDLGFTTVAMALEDDSVSLDELVRRLNNGPAETDHIDRLALIFGTEGDGLSHHTISR 256 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M + +LNV+ ++AVA Y Sbjct: 257 ADLTVKIPMSHGVDSLNVAASSAVAFY 283 >gi|326668086|ref|XP_691554.4| PREDICTED: rRNA methyltransferase 1, mitochondrial [Danio rerio] Length = 387 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 68/309 (22%), Positives = 120/309 (38%), Gaps = 39/309 (12%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFN------------QKSRHTSQPENL 49 N I K + + H++K + + ++Q +K +Q + Sbjct: 72 NEIHKSTKSQRKPSQAVHFSKTGK--KLSSELQKLRFEDLSESESSSIRKDSQPNQDKEF 129 Query: 50 -FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-----NLPHPFPVKTVPPQTIDK 103 ++GV AL R L D + +K V QT++K Sbjct: 130 EIVFGVAPCLLALTRGRRSASCLFVKSGEGPERDAILRVCQEAIRRGVQIKRVNKQTLEK 189 Query: 104 IVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + VHQGL L+ + +L+ L +VLD V DP N+GAILRSA Sbjct: 190 MCD-GKVHQGLCLQASCLGFIKEERPITSLEVKNQRPLWLVLDGVQDPMNLGAILRSAYY 248 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ-------T 209 D I+++ S + ++K+++G +E + SNL ++ G+Q Sbjct: 249 LGVDRIVSSINNSCPLTPTVSKASAGVMEVMDVFGCSNLKRMIKVKVEEGWQVVGTVGLE 308 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNV 265 G S + + L++G EG GL + ++ + + M +++LNV Sbjct: 309 EGSSQSNVLSCSDFKMSRPTLLLMGGEGDGLSSELRQLCDVLITIPPRRHMHPGVESLNV 368 Query: 266 SNAAAVALY 274 S A + L+ Sbjct: 369 SVATGILLH 377 >gi|288920452|ref|ZP_06414761.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f] gi|288348181|gb|EFC82449.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f] Length = 288 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 52/256 (20%), Positives = 89/256 (34%), Gaps = 13/256 (5%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-------ATKNALARL 81 DY + + R + G + AL + L+ + AR Sbjct: 22 DYVALTDVALRRRREPEQGLFIAEGERVIERALRAGYQPRSALVSPARLPGVPASFWARP 81 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 D P PV P + I G E LA + ++ ++V + + Sbjct: 82 SPDRPAP---PVYLAGPAVLAAITGFEVHRGALASMCRREPLDPAHLLSTARRVLVCEDL 138 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG---ALEHIPYIRISNLTDA 198 N+GAI RSA D ++ + R + + + G A+ + Sbjct: 139 VSHTNLGAIFRSAAGLGMDAVLLSPRCADPLYRRSVRVSMGEVFAVPYARLEPWPAALSL 198 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L+ + +D++A++LG EG GL + TAT A + M Sbjct: 199 LRTAGFEVVALTPAPDAQELTAAWAAPDDRVAVLLGTEGSGLTDQVLATATRRARIPMAH 258 Query: 259 IIKALNVSNAAAVALY 274 + +LNV+ AA+A Y Sbjct: 259 GVDSLNVAATAAIACY 274 >gi|229587012|ref|YP_002845513.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5] gi|228022062|gb|ACP53770.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5] Length = 240 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 119/238 (50%), Gaps = 5/238 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ + + L + V Sbjct: 2 QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIF---ETNKKLIGTRAYEIVNN 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K++ + A +D + +LD + D NIGAI+RSA A Sbjct: 59 DILSKLLENQTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAAA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F + II + SP+ES +AK+A G LE IP I++ NL + + GF IGL+ + Sbjct: 119 FDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVINLRSCMNYLKKHGFWIIGLTGSA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ +DKI L+ G+E KG+R ET +A + + +++LNVSNAA++ + Sbjct: 179 NDYFTDKLISDKIVLVFGSEDKGIRKLVAETCDYLAKIPISQRVESLNVSNAASIIFH 236 >gi|16125488|ref|NP_420052.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|221234234|ref|YP_002516670.1| 23S rRNA Gm2251 methyltransferase [Caulobacter crescentus NA1000] gi|13422566|gb|AAK23220.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|220963406|gb|ACL94762.1| 23S rRNA Gm2251 methyltransferase [Caulobacter crescentus NA1000] Length = 278 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 93/276 (33%), Positives = 144/276 (52%), Gaps = 16/276 (5%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--------NLFLYGVHTVSAALNNPSRKI 68 SH + R Q + +S+ Q + +++G H V AAL NP R Sbjct: 2 SSHSERNDRKRPS---AQGRDFRSKPRKQNDFSRGQGDAKDWIWGTHAVEAALANPRRPA 58 Query: 69 -FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 +LLAT + RL V + Q I K + + AVHQGLAL+ T+ Sbjct: 59 PKRLLATPDRAKRLAPHLQKLTCLQV--MEGQEIAKQLPQGAVHQGLALKIDEPEPLTIA 116 Query: 128 A--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L++LD + DP NIGAI RSA AF G+I R++P+ S VLAK+A GA++ Sbjct: 117 ELGTPAKGFLVMLDQITDPQNIGAIFRSAAAFGAKGVILQDRHAPALSGVLAKTAVGAVD 176 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 PY R+ NL+ AL+++ G++ + L+ ++++ L+ + + L+LG+EG+G+R Sbjct: 177 KAPYARVVNLSRALEELADLGWRAVALAGEAEQSLDAVLDSQPTVLVLGSEGEGVRRLVA 236 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 E ++ + MPG ++LNVS AAA+ALY A Sbjct: 237 EHCDALGKIPMPGGFESLNVSAAAAIALYEASKVRA 272 >gi|319762190|ref|YP_004126127.1| tRNA/rRNA methyltransferase (spou) [Alicycliphilus denitrificans BC] gi|330825998|ref|YP_004389301.1| tRNA/rRNA methyltransferase SpoU [Alicycliphilus denitrificans K601] gi|317116751|gb|ADU99239.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans BC] gi|329311370|gb|AEB85785.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans K601] Length = 258 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 94/254 (37%), Gaps = 10/254 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ K ++ +Q S + ++L G H SAAL R + + L Sbjct: 11 SRDNALLKDLRRLSQDSTAYRKQGRVWLEGDHLCSAALARGQRPAIAVF--SESFWPLAP 68 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + V + + + + LDA + +VLD + D Sbjct: 69 E-EYAQAATKNVVIADALWQDISGLESPARMGFVLPLPAQQALDAQSPT---VVLDRLQD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G+ILRSA AF I K + S + ++ GA +Q + Sbjct: 125 AGNVGSILRSASAFGFAQIAALKGTAALWSPKVLRAGMGAHF----ALRLVEGLDVQDID 180 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + SS L + I+G EG+G+ P Q A+ + PG ++L Sbjct: 181 RLRVPLLATSSHQGDWLHRAQLPWPCGWIMGHEGQGVSPDLQRRASRHIRIVQPGGEESL 240 Query: 264 NVSNAAAVALYITQ 277 NV AAA+ L+ + Sbjct: 241 NVGAAAAICLHASA 254 >gi|254480449|ref|ZP_05093696.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium HTCC2148] gi|214039032|gb|EEB79692.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium HTCC2148] Length = 261 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 100/235 (42%), Gaps = 10/235 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL----ARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG AL +P + L + + DA PV + + +I Sbjct: 20 VYGRKPALEALRDPLLQCHALHLSSSNRGGGIITELLDAAAKKSIPVHEHSREALARISK 79 Query: 107 KEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 QG+AL+ +L Q ++ LD + +P N+G ILRSA A D Sbjct: 80 NGKQDQGVALDILCPSFRSLQTYVEELPGLAPQRVLALDGITNPQNLGMILRSAAAGHID 139 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ + + + + ++ K+++G L P + + +AL+++ + L +++ + L Sbjct: 140 AVLWSSKGNAALGPLVIKASAGTLYRAPLVMCDSQVNALRRLAQQEVEICSLEANASQTL 199 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + +A +LG E +G+ + A + M +++LNV+ A++ + Sbjct: 200 FEFTPKKHVAYVLGNETEGVSKDVVQLADKSLSIPMNNGVESLNVAVTASLIAFA 254 >gi|306822854|ref|ZP_07456230.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|309801341|ref|ZP_07695470.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium JCVIHMP022] gi|304553486|gb|EFM41397.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|308222230|gb|EFO78513.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium JCVIHMP022] Length = 288 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 89/267 (33%), Gaps = 22/267 (8%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y + ++R + AL + I L+ A + Sbjct: 17 YTNLTEIQLRNRLEPSKGLFIAESPKVIDRALASGREPISLLVEEPWIDGMSRTFACIDE 76 Query: 90 ----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV P+ + ++ G LA L + R ++ + V++++ D Sbjct: 77 HWGGDIPVYVASPEQLKRLTGYRLHRGALAAMRRWTLPSVEEVCRGARRIAVMENIVDHT 136 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA++RSA A D ++ T A+ + G + IP+ RI Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGEDKHYWPFTGM 196 Query: 206 GFQTIGLSSDSKKP------------------LEQEIKNDKIALILGAEGKGLRPKTQET 247 + + D++ALI G EG GL T Sbjct: 197 RELHDLGFTTVAMALEDDSISLDELVRRLNNGPAETDHIDRLALIFGTEGDGLSHHTISR 256 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M + +LNV+ ++AVA Y Sbjct: 257 ADLTVKIPMSHGVDSLNVAASSAVAFY 283 >gi|284162537|ref|YP_003401160.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus profundus DSM 5631] gi|284012534|gb|ADB58487.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus profundus DSM 5631] Length = 232 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 15/236 (6%) Query: 51 LYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 + G++ V AL + KIF L N + PV P Sbjct: 3 VMGINGVMEALKSGKVNKIFVLKDATNPRIKEIVALAKKKKIPVVYTP--------QLPK 54 Query: 110 VHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 +G+ E +P+ +D +R ++ LD V DP N+GAI+RSA F C G++ Sbjct: 55 EARGVMAEISPIEYKEVDTIIDKCIREGSFILFLDSVEDPQNMGAIMRSAEFFGCAGVVI 114 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 KR + +AK ++GA+ H+ R+ NL + L+K+ +G +G D + Sbjct: 115 PKRRCVQVNETVAKVSAGAVFHLDIARVENLANILKKLKKFGITVVGADLDGEPLR-NVD 173 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A+++G E KGL ++ +A + G I +LN+S A A+ +Y + Sbjct: 174 LSPPLAIVVGGEDKGLSKPVKKQCDFIAKIEGYGKINSLNLSVAGAIIMYEFRRRL 229 >gi|163792968|ref|ZP_02186944.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199] gi|159181614|gb|EDP66126.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199] Length = 270 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 48/253 (18%), Positives = 98/253 (38%), Gaps = 5/253 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK---IFQLLATKNALARLDW 83 +++ K++++ K + SQ G+ V A+ R + A+ + L R Sbjct: 14 NQEIKELRALETK-KGRSQQNAFVSEGLRHVVEAVRRGWRVSRLVLSESASSSELLREAI 72 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V TV + + +I ++ +A+ + L+ + D Sbjct: 73 QGCEASGGRVLTVTDELMTRIARRDNAQSVIAVIEQRWGDLEAVIAAPRVTWLALEGIRD 132 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G+I+RSA AF+ G++ S +++ G++ + + L Sbjct: 133 PGNLGSIIRSADAFAVAGVLLIGNTVDPFSTEAVRASMGSIV-NVPLIRLDEAAYLDWHR 191 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 W +T+G ++ E + L++G E GL + T + + M +L Sbjct: 192 GWTGRTVGTHLRAELQPESVERGSATLLVMGNEQSGLPARIAATCNQLVRIPMRDGADSL 251 Query: 264 NVSNAAAVALYIT 276 N++ A A+ LY Sbjct: 252 NLAAATAIMLYAV 264 >gi|330469058|ref|YP_004406801.1| tRNA/rRNA methyltransferase SpoU [Verrucosispora maris AB-18-032] gi|328812029|gb|AEB46201.1| tRNA/rRNA methyltransferase (SpoU) [Verrucosispora maris AB-18-032] Length = 267 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 53/282 (18%), Positives = 95/282 (33%), Gaps = 23/282 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M LI++ E+I DY+ + ++R G + A Sbjct: 1 MELITEPDDERI---------------ADYRALTDVELRTRWEPPHGLFIAEGELVLRRA 45 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L L+ K R+D A+L PV P + + G LA Sbjct: 46 LRAGYPARSYLVDAK----RVDQLADLDTGDAPVYAATPDVLQEATGFHVHRGVLASFRR 101 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L + + ++ ++L+ VN+ N+GAI R+ A D ++ + + + Sbjct: 102 KPLPSAAEVLATARRTVILEDVNNHTNLGAIFRAVAALGVDAVLLSPSCADPLYRRSVRV 161 Query: 180 ASG---ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 + G A+ + ++ + + AL+LGAE Sbjct: 162 SMGEVFAVPYAKLDPWPTALAQVRDAGFTVLAMTPAPDAVPIQRLTPAQRARAALLLGAE 221 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 G GL + + M + +LNV+ A AVA + Sbjct: 222 GAGLTQAAMAASDVRVVIPMRRGVDSLNVAAATAVACWELGR 263 >gi|325678815|ref|ZP_08158413.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8] gi|324109319|gb|EGC03537.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8] Length = 266 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 81/238 (34%), Gaps = 7/238 (2%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + AL+ + L K + PV T + + K Sbjct: 27 KAAGIFVAESPKVIRTALDAGFEAVSMLAEKKYVSGQAADIIARLGDVPVYTADREQLTK 86 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 I G + L + + R + VL+ + + NIGA+ RSA A DGI+ Sbjct: 87 ITGFKLTQGVLCAMKRRAMQAFPENARR---IAVLEDIMNQTNIGAVFRSAAAMGIDGIL 143 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 T S + + G + I + + + + Sbjct: 144 LTDGCSDPLFRRTIRVSMGTVFQIAWRYAGTSDSGYIEKLKADGWLTAAMALRDDTVSIA 203 Query: 224 IKN----DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +K+A++LG EG GLR T + M + +LNV+ A AVA + T+ Sbjct: 204 DERLKNAEKLAIVLGTEGDGLREDTISACDLTVKIPMAHGVDSLNVAAAGAVAFWETR 261 >gi|91218034|ref|ZP_01254985.1| putative rRNA methylase [Psychroflexus torquis ATCC 700755] gi|91183781|gb|EAS70173.1| putative rRNA methylase [Psychroflexus torquis ATCC 700755] Length = 263 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 98/256 (38%), Gaps = 5/256 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K + +KS+ E + G+ +S A L+ LD + Sbjct: 9 NNPFIKNLLLLQKKSKLRKSQEEFVIEGLQEISYAQKATYEFSQVLVCLDLFDNALDLEK 68 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNSQLLMVLDHVNDP 144 + + +K+ + + +A+ L L + L+M+ + P Sbjct: 69 F---DCEITEISLDVFEKLAYRSSTGGLIAIAKPKDLRIENLRLSSKTPLIMIAEAPEKP 125 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIGA+LR+A A D +I + + + +S+ G + + + + + + Sbjct: 126 GNIGALLRTADAAKLDAVIIANPKTDLYNPNIIRSSVGTVFTNSIGTGTTS-EIIDFLKN 184 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + E + A+++G E +GL + + A + + M G + +LN Sbjct: 185 NNIKIYAAALQDSSSYLAEGFKEATAIVVGTEHQGLSEEWRINADKIIKIPMEGQVDSLN 244 Query: 265 VSNAAAVALYITQNHF 280 VS +AA+ ++ + Sbjct: 245 VSVSAAILIFEAKRQR 260 >gi|228471684|ref|ZP_04056457.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga gingivalis ATCC 33624] gi|228276837|gb|EEK15532.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga gingivalis ATCC 33624] Length = 246 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 107/240 (44%), Gaps = 13/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVGK 107 ++G+ V A+ I ++ K L + N P VP + + ++ Sbjct: 6 IFGLRPVIEAIEAGKT-IDKIFIQKGLSGTLFTELNTLISQQKLPCSYVPVEKLQRLT-- 62 Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ +P+ L+ LL++LDH++D NIGAI+R+A Sbjct: 63 RGNHQGVVALLSPVEFVPLEELVLSTIESGKVPLLLILDHLSDVRNIGAIIRTAECTGVS 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K+ S S + K+++GA+ +IP ++ NL D + + G + IG + + L Sbjct: 123 GIILPKQGSASIGEDMVKTSAGAIFNIPLCKVDNLIDTIYYLQGSGIKVIGATEKASSLL 182 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q + +A+++GAE G+ + A L + G I +LNVS A LY Sbjct: 183 YQLNLTEPLAIVMGAEDTGISKGVLKVLDERAKLPIQGEISSLNVSVACGAFLYEVVRQR 242 >gi|256848162|ref|ZP_05553606.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] gi|256715222|gb|EEU30199.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] Length = 249 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 113/236 (47%), Gaps = 13/236 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIV 105 F+ G H AAL + ++I ++ K + VP +D++V Sbjct: 7 EFVIGRHPAVAALKSD-QEINKVFIQKGLRTDAIAQIIKLAKERHLVISNVPKTKLDQMV 65 Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + HQG+AL A T+D L++LD + DPHN+G+I+R+A A Sbjct: 66 DHQ-NHQGVALAVAAYHYATIDDLFANAQAHDEEPFLLILDELADPHNLGSIMRTADAAG 124 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 GII KR + ++V+AK+++GA+E +P R++NL K + + Sbjct: 125 VHGIIIPKRRAVGLTSVVAKTSAGAIERVPVARVTNL-VQTAKELKARGVWLFGTDMQGT 183 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +A+++G EGKG+ P ++T M + M G +++LN S AA++ +Y Sbjct: 184 DYRRWDAQGAVAVVIGNEGKGISPLLKKTCDEMLTIPMVGQVQSLNASVAASLLIY 239 >gi|229817686|ref|ZP_04447968.1| hypothetical protein BIFANG_02958 [Bifidobacterium angulatum DSM 20098] gi|229785475|gb|EEP21589.1| hypothetical protein BIFANG_02958 [Bifidobacterium angulatum DSM 20098] Length = 290 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 53/271 (19%), Positives = 92/271 (33%), Gaps = 22/271 (8%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y + ++R + AL + L+ A + Sbjct: 17 YVNLTEIQLRNRLEPAKGLFIAESPKVIDRALAAHREPLSLLVERPWLEGMASMFARIDE 76 Query: 90 ----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV P+ + ++ G L+ L + R + + V++++ DP Sbjct: 77 QWGPDIPVYVASPEQLKRLTGYRLHRGALSAMRRWPLPSVEEVCRGAHRVAVMENIVDPT 136 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA++RSA A D ++ T A+ + G + +P+ RI Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQVPWTRIDGDDKHYWPFKGL 196 Query: 206 GFQTIGLSSDSKKPLEQE------------------IKNDKIALILGAEGKGLRPKTQET 247 + LE + DK+ALI G EG GL T Sbjct: 197 EELHSLGFTTVAMALEDDSISLDELTRRLNSSASDPQHIDKLALIFGTEGDGLNRHTIAR 256 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + M + +LNV+ ++AVA Y T+ Sbjct: 257 ADLTVKIPMSHDVDSLNVAASSAVAFYATRR 287 >gi|223043735|ref|ZP_03613778.1| RNA methyltransferase, TrmH family [Staphylococcus capitis SK14] gi|222442832|gb|EEE48934.1| RNA methyltransferase, TrmH family [Staphylococcus capitis SK14] Length = 246 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 99/277 (35%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ KI + + R + + G+H + A Sbjct: 1 MEQITSAQNNKIKNANKLKKKRDR-------------------DKTGLALIEGIHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + D + + + + G QG Sbjct: 42 YQSGIEIKQLFVIEPDRTDEDLIDYANET----YEINMKVAEALSG-TVTPQGFFAVIEK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 +A + ++++D + DP N+G ++R+A A D I+ K + + +++ Sbjct: 97 PHYNDTEAQQ----VLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTADPYQDKVMRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ HIP + T + + + ++ + AL+LG EG+G+ Sbjct: 153 QGSIFHIPIVIKGLTTYINEFDGPVYG----TALEDAVSFKEIEAQSRFALLLGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + T + + G ++LNV+ A ++ LY + Sbjct: 209 NQELLQQTTQNLIIPIYGKAESLNVAIAGSILLYQLK 245 >gi|29349921|ref|NP_813424.1| putative rRNA methylase [Bacteroides thetaiotaomicron VPI-5482] gi|29341832|gb|AAO79618.1| putative rRNA methylase [Bacteroides thetaiotaomicron VPI-5482] Length = 266 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 84/233 (36%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + ++R + + AL+ + L K+ P Sbjct: 20 LTEAQLRNRIEPDKGIFIVESPKVIERALDAGYEPLAILCEHKHITGDASNIIERCGNVP 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + + + G L P + + R ++ ++V+D V D NIGAI R Sbjct: 80 VYTGSRELLATLTGYVLTRGVLCAMRRPAVRSMAEVCREARRIVVIDGVVDTTNIGAIFR 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D ++ T+ + + + G + +P+ + L K+ Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGSLSDLGKLGFRTAAMALT 199 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + ++A+++G EG GL P+T A + + M + +LNV Sbjct: 200 DNSVSIDDPVLATEPRLAIVMGTEGDGLSPETIAEADYVVRIPMSHGVDSLNV 252 >gi|298384290|ref|ZP_06993850.1| rRNA methylase [Bacteroides sp. 1_1_14] gi|298262569|gb|EFI05433.1| rRNA methylase [Bacteroides sp. 1_1_14] Length = 266 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 85/233 (36%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + ++R + + AL+ + L K+ P Sbjct: 20 LTEAQLRNRIEPGKGIFIVESPKVIERALDAGYEPLAILCEHKHITGDASNIIERCGNVP 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + + + G L P++ + R ++ ++V+D V D NIGAI R Sbjct: 80 VYTGSRELLATLTGYVLTRGVLCAMRRPVVRSMAEVCREARRIVVIDGVVDTTNIGAIFR 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D ++ T+ + + + G + +P+ + L K+ Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGSLSDLGKLGFRTAAMALT 199 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + ++A+++G EG GL P+T A + + M + +LNV Sbjct: 200 DNSVSIDDPVLATEPRLAIVMGTEGDGLSPETIAEADYVVRIPMSHGVDSLNV 252 >gi|195496211|ref|XP_002095597.1| GE22485 [Drosophila yakuba] gi|194181698|gb|EDW95309.1| GE22485 [Drosophila yakuba] Length = 407 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 41/294 (13%), Positives = 93/294 (31%), Gaps = 28/294 (9%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + + +L + + + + + + + G + AL + L + K Sbjct: 108 NLEFVRLTLQDPLTSTLLTTVRSRKRRDKNRQIIVEGRRLIQEALQCGLKMEALLFSQKE 167 Query: 77 ALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 LA + + A L + VP + +A+ P + Q Sbjct: 168 QLALVKEEVGFAQLETGTKIYKVPQHDLKTWSSLVTPPGLMAIFDRPSDKGLDKNLAEQQ 227 Query: 134 LL--------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L +V D++ +P+N+G+I+R+ A C ++ T + + G Sbjct: 228 RLGSEPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQF 287 Query: 186 HIPYIRISNLT-----------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 +P D + Q ++ + + + LI+G Sbjct: 288 RVPIRDDVTWEELALTIPPEAADDCHVFIAESNQRKRENNQTIDYADIQGLGAHNLLIIG 347 Query: 235 AEGKGLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 E G+ ++ + I +LNV++A + L+ + + Sbjct: 348 GESHGVSEDAYRFLNLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRRKLNQ 401 >gi|34581366|ref|ZP_00142846.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246] gi|28262751|gb|EAA26255.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246] Length = 240 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 119/238 (50%), Gaps = 5/238 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ + + L + V Sbjct: 2 QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTRKIF---ETNKKLIGTRAYEIVNN 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K++ + A +D + +LD + D NIG I+RSA A Sbjct: 59 DILSKLLENQTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGTIIRSAAA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F + II + SP+ES +AK+A G LE IP I+++NL + + GF IGL+ + Sbjct: 119 FDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ +DKI L+ G+E KG+R ET +A + + +++LNVSNAA++ + Sbjct: 179 NDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAASIIFH 236 >gi|307298256|ref|ZP_07578060.1| RNA methyltransferase, TrmH family, group 3 [Thermotogales bacterium mesG1.Ag.4.2] gi|306916342|gb|EFN46725.1| RNA methyltransferase, TrmH family, group 3 [Thermotogales bacterium mesG1.Ag.4.2] Length = 247 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 101/244 (41%), Gaps = 14/244 (5%) Query: 50 FLYGVHTVSAAL---NNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDK 103 +L+G + + L ++ + + + + F ++ + P+ + Sbjct: 2 YLHGRNVLRELLTVDSSALNVKRIVFTNQKNVDSQLLELAEESKARGFRIEEMAPEKLAN 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + +E HQG+ ++ + + + +++LD + DPHN+GAI+R++VA Sbjct: 62 LC-REKKHQGVVIDLKQFPYSDSEELLRAIEEQRTATIVLLDQIQDPHNLGAIIRTSVAV 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D I T + +E S L I +++ I S Sbjct: 121 GADAIAITS-SNSAEITPSVVKVSAGLAFKIPIIKIINMAQFEEILKEKGFWIYASDMEG 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P + ++K A++ G EGKG+R +E + + + M + +LNV+ +AA+ L+ + Sbjct: 180 IPYYENEYSEKSAIVFGNEGKGVRRLVKERSDRLISIPMEDTVDSLNVAASAAIILFDRR 239 Query: 278 NHFA 281 A Sbjct: 240 RQLA 243 >gi|295688896|ref|YP_003592589.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter segnis ATCC 21756] gi|295430799|gb|ADG09971.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter segnis ATCC 21756] Length = 276 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 90/273 (32%), Positives = 142/273 (52%), Gaps = 5/273 (1%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-FQL 71 + + + RD++ +++G H V AAL+NP R +L Sbjct: 3 SHSERNDRKRPSAQGRDFRSKPRKPNDFSKGQGDAKDWIWGTHAVEAALSNPHRPAPKRL 62 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--V 129 LAT + RL V + Q I K + + AVHQGLAL+ S ++ Sbjct: 63 LATPDRAKRLAPALQKLSCLQV--MEGQEIAKHLPQGAVHQGLALKIDEPESLSIAELAA 120 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 N L++LD + DP NIGAI RSA AF G+I R++P S VLAK+A GA++ +PY Sbjct: 121 SNDGFLVMLDQITDPQNIGAIFRSAAAFGAKGVILQDRHAPVLSGVLAKTAVGAVDKVPY 180 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R+ NL+ AL+++ G++ + L+ ++++ L++ + L+LG+EG+G+R E Sbjct: 181 ARVVNLSRALEELADLGWRAVALAGEAEQTLDEVLDGAPTVLVLGSEGEGVRRLVAEHCD 240 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + MPG ++LNVS AAA+ALY K Sbjct: 241 VLGKIPMPGGFESLNVSAAAAIALYEASKPRGK 273 >gi|283777897|ref|YP_003368652.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] gi|283436350|gb|ADB14792.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] Length = 272 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 10/263 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLD 82 + K+ ++ + + + + + G ++ AL + + +A ++ Sbjct: 9 QNLRVKQAVKLRER-KARDEQQRIIIDGEREITRALGAGVVALELFVLDGVELSATSQQT 67 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMV 137 + V Q ++K+ + V + + A + L+ V Sbjct: 68 MRHARESGATILPVSRQVMEKLAFGDRVEEVILVAESPSPALDTFLQDKLAAKRDLLVAV 127 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 ++ V P N+GAILRSA A DG+I + +++ GAL +P I ++ Sbjct: 128 VEGVEKPGNLGAILRSADAAGIDGVIVCGARLDLYNPNAIRASLGALFTLPVIGMTVP-Q 186 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 AL + FQ + D + A+ILG+E +GL + L M Sbjct: 187 ALAWLRMHQFQMLATRVDGAIDYTTADLRGRTAIILGSEAEGLSREWLGDDIRAISLPML 246 Query: 258 GIIKALNVSNAAAVALYITQNHF 280 G + +LN+S AA+ Y Sbjct: 247 GTVDSLNLSVTAAILFYEALRQR 269 >gi|308234254|ref|ZP_07664991.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae DSM 15829] Length = 367 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 70/353 (19%), Positives = 123/353 (34%), Gaps = 81/353 (22%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQ-------------------SFNQKS------ 40 KK ++K +++++H+ + K+ + S ++S Sbjct: 12 KKPTKKNKNVQNAHFTSNEKGAPYKKRTRVSGDSGTRARSSSAHARSFSSQKRSSGASSA 71 Query: 41 --RHTSQPENL--FLYGVHTVSAALNNPSRKIFQLLATKN-------ALARLDWDANLPH 89 R + + G AL + +LL +N A Sbjct: 72 YMRPRRERGVRAPMIEGRRACFEALEA-HLPLKKLLVQENMNAALQTADVERLITCARER 130 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL----------------------- 126 + V +D + A HQG+ E AP Sbjct: 131 GIACEYVKKSAMDSLSSHGA-HQGVMFEAAPFAYAEFGDVLAAIDRKGARATDASAADAS 189 Query: 127 --------------------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 A + + L+++LDHV D N GAI+RSA +I Sbjct: 190 AADASAADAHELVTNTDNQTAAHKQASLVVLLDHVVDEGNFGAIVRSAEVVGASCVIIAN 249 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 S K+++GA+ H+P +++ NL A+ ++ GF IG S +++ + Sbjct: 250 ARCASVGVGAYKTSAGAVLHMPIVQVVNLARAIDELKEHGFWVIGASEHAQQTVWDAPFT 309 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K+ LI+G+E G+ Q+ + L G I++LNV+ AA V Y Sbjct: 310 GKVCLIMGSEENGISSLVQKKCDFICKLPQRGRIESLNVAQAATVMCYEWMRQ 362 >gi|257063283|ref|YP_003142955.1| rRNA methylase [Slackia heliotrinireducens DSM 20476] gi|256790936|gb|ACV21606.1| rRNA methylase [Slackia heliotrinireducens DSM 20476] Length = 286 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 91/267 (34%), Gaps = 20/267 (7%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK------NALARLDW 83 Y ++ +++ + + + AL + L+ + + L R+ Sbjct: 17 YARLTEAQLRNKLEPEKGIFIAESLKVIDRALAGGMVPLSVLMTPEWMDAAADMLERIQQ 76 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL------LMV 137 P+ P + K+ G + L P + D + + + V Sbjct: 77 AGEGGADVPIYVGPADELQKLTGFKLTRGILCAMRRPKMPSAEDLLATCRNGGPARRVAV 136 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L+ + D N+GAI RSA A + D ++ T + + G + +P+ R+ Sbjct: 137 LEGIVDHTNVGAIFRSAAALNVDAVLVTPTCCDPLYRRAVRVSMGTVFQVPWTRLGEDVH 196 Query: 198 ALQKMHSWGFQ--------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +K+AL+ G EG GL P+T T Sbjct: 197 DWPGQGLERLHALGFKTAAMALSDDSVSLGDPTLAAEEKLALVFGTEGDGLSPRTIATCD 256 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276 + M + +LNV+ A+AVA + Sbjct: 257 YTVRIPMSHGVDSLNVAAASAVAFWEL 283 >gi|90021356|ref|YP_527183.1| von Willebrand factor, type A [Saccharophagus degradans 2-40] gi|89950956|gb|ABD80971.1| tRNA/rRNA methyltransferase (SpoU) [Saccharophagus degradans 2-40] Length = 256 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 8/232 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTVPPQTIDKIVG 106 +YG V L + S +I +L + D V Q + +I Sbjct: 21 VYGRKPVLEVLQDNSLEIHKLHLADSNKPAAILDDMVKLAKKRGIEVCYHDKQALSRISK 80 Query: 107 KEAVHQGLALET----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 QG+A + L + + ++ LD V +P N+G I+RSA A + I Sbjct: 81 NSKQDQGVAADVIGKGFQSHQSFLSSNKKHYRILALDGVTNPQNVGMIIRSACASPINAI 140 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I ++ ++ K+++G L P +R L L+ G IGL +++ L + Sbjct: 141 ILPEKGCAKLDPLVIKASTGTLFRAPILRCKTLASCLKAFAESGADIIGLDANAPHTLGE 200 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E +LG E +GL + + M +++LNV+ A++ + Sbjct: 201 EPLTGAKVFVLGNETEGLSSDVRAICNKHVSIPMLNNVESLNVAVTASLIAF 252 >gi|152965580|ref|YP_001361364.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans SRS30216] gi|151360097|gb|ABS03100.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans SRS30216] Length = 272 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 103/257 (40%), Gaps = 10/257 (3%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 RDY ++ ++R GV + AL LL +++ L L Sbjct: 19 RDYTALKDVQLRARREPAEGLYLAEGVEVIRRALAAGHVP-RSLLLSRSRFEDLADV--L 75 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVN 142 P V P + G + +H+G ++ L+VL+ V Sbjct: 76 PAGATVFVAPVAAFADLTGVD-LHRGALASMQRPAQRSVPDLLASLPAGPARLVVLEDVV 134 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQK 201 D N+GA+ RSA AF DG++ + R + + + G + H+P+ R ++ Sbjct: 135 DHTNVGALFRSAAAFGVDGVVVSPRCADPLYRRSVRVSMGTVLHLPWARAASWPGDLDLL 194 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + ++ L +++AL+LG EG GL + A + + M + Sbjct: 195 RSAGFAVAALALTEDSVALGSFAVPERLALLLGTEGDGLSRRALSGADLVVRIPMDPRVD 254 Query: 262 ALNVSNAAAVALYITQN 278 +LNV+ A+AVAL+ T+ Sbjct: 255 SLNVAAASAVALWETRR 271 >gi|282864273|ref|ZP_06273329.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE] gi|282560760|gb|EFB66306.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE] Length = 279 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 87/247 (35%), Gaps = 11/247 (4%) Query: 45 QPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPP 98 + G V A + + + +L AT A R H V Sbjct: 28 KERRFIAEGPQAVREAAAHRGSDGTSTLTELFATVEAADRYADIVGAAHAAGARVHLADA 87 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + + + + L+ VL HV DP N G +LR A A Sbjct: 88 DVLADVSQTVTPQGLIGVCRFLDSPFEEILAAKPTLVAVLAHVRDPGNAGTVLRCADAAG 147 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D ++ T + +++ G+L H+P + A+Q + G + + Sbjct: 148 ADAVVLTDASVDLYNPKSVRASVGSLFHLPVAVGVPVEQAVQGLRGAGVRILAADGAGTD 207 Query: 219 PLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L+ E A + G E GL +T+ A ++ + + G ++LN++ AAAV LY Sbjct: 208 DLDDELDAGTMGGPTAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 267 Query: 275 ITQN-HF 280 + Sbjct: 268 ASARAQR 274 >gi|225572082|ref|ZP_03780946.1| hypothetical protein RUMHYD_00376 [Blautia hydrogenotrophica DSM 10507] gi|225040416|gb|EEG50662.1| hypothetical protein RUMHYD_00376 [Blautia hydrogenotrophica DSM 10507] Length = 290 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 96/254 (37%), Gaps = 7/254 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y + +RH + + ALN I L+ + ++ Sbjct: 33 YARFTEVQLLNRHEPEKGIFIAESPKVIERALNAGCVPISFLVEQRQVESQEQERLFRRG 92 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T P + ++ G L P + ++ + VL++V +P N+GA Sbjct: 93 NVPVYTAPFHVLTQLTGFALTRGMLCAMRRPKQPSVGEICAGARRIAVLENVVNPTNVGA 152 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A + DG++ T+ S + + G + IP+ + + + + Sbjct: 153 IFRSAAALNVDGVLLTQACSDPLYRRAIRVSMGTVFQIPWTFLDKQFSWPLQGIAHLREL 212 Query: 210 IGLSSDSKKPLEQEIKND-------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + + +D ++A++LG EG GL +T + M + + Sbjct: 213 GFQTVAMALREDSLRVDDSRLVDAPRLAIVLGTEGDGLACETIAACDYTVCIPMSHGVDS 272 Query: 263 LNVSNAAAVALYIT 276 LNV+ A++VA + Sbjct: 273 LNVAAASSVAFWQL 286 >gi|224534716|ref|ZP_03675288.1| RNA methyltransferase, TrmH family, group 3 [Borrelia spielmanii A14S] gi|224513964|gb|EEF84286.1| RNA methyltransferase, TrmH family, group 3 [Borrelia spielmanii A14S] Length = 246 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 112/240 (46%), Gaps = 15/240 (6%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 +++ ++ N ++ K++ + + + +DKI+ K H+G Sbjct: 7 NSIIESIKNNKG-FELYISKKSSKTKEIEKLAKTQNIKILRISINELDKIL-KTKDHRGF 64 Query: 115 ALETAPLLSPTLDAVRNSQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161 AL+ + + +++LD + DP N+GAILR+A FS D Sbjct: 65 ALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNLGAILRTAEQFSIDL 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +ITT++ S +++ + +++SGA +++ I ++N+ + + + GF + + Sbjct: 125 VITTQKRSAKDNSTVLRTSSGASQYVKKITVANINNTIIFLKKHGFWIYASDIKGQDINK 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +I + KIALILG EGKG+ ++ + + + G I +LNVS + + ++ + Sbjct: 185 IKINDKKIALILGNEGKGVHKLIKQNSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244 >gi|212723624|ref|NP_001132172.1| hypothetical protein LOC100193597 [Zea mays] gi|194693648|gb|ACF80908.1| unknown [Zea mays] Length = 365 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 52/273 (19%), Positives = 97/273 (35%), Gaps = 26/273 (9%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K + + L L G+ + + I LL +A Sbjct: 86 NPLVKHCVKLRLSAAYRRSCRRLLLVGLAPILEVCSFELEAIDYLLLLDGV---EAPEAL 142 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------------VRNSQL 134 + V + K+ G ++V A+ + + D + Sbjct: 143 REFSGDILYVSAAVMKKVSGMQSVDSTEAVAVMHMPNHFRDLGSHQDGDALDGLFSYPKR 202 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD + DP N+G ++RSA AF DG+ + ++A GA +P + + Sbjct: 203 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGTW 262 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEI----------KNDKIALILGAEGKGLRPKT 244 G S ++ N+ + L+LG+EG GL +T Sbjct: 263 HDLHALVTKYRMKMMAGHPESSSDASKETYSLSNELADSLLNESLCLVLGSEGNGLSAET 322 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + ++ M G ++LNVS A + L++ Q Sbjct: 323 LQAC-ELVNIPMEGTFESLNVSVAGGIFLFMLQ 354 >gi|333030523|ref|ZP_08458584.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM 18011] gi|332741120|gb|EGJ71602.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM 18011] Length = 252 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 94/256 (36%), Gaps = 16/256 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 K ++S +QK ++ + + G V + L+AT++ + Sbjct: 6 AKIKLIRSLDQK-KYRKEHQLFVAEGPKLVDELI--GYFNCKLLVATQDWIQEHSNY--- 59 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 H + + K + Q +AL P A++ L + LD V DP N+ Sbjct: 60 -HTEELILATQDELSKASALKTPQQVIALFEQPQYEIDNKAMQ-HSLCLALDGVQDPGNL 117 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R A F + I ++ + ++ G L + S + + Sbjct: 118 GTIIRLADWFGIEHIYCSQDTVDIYNTKTIQATMGGLARVKIHYTSLT----EIIKQNPN 173 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL---HMPGI-IKAL 263 I + + + + K +I+G EGKG+ + QE + ++ M ++L Sbjct: 174 IPIYGTFLDGENIYDKQLEQKGLIIMGNEGKGISDELQELVSHKLYIPNYPMNKESAESL 233 Query: 264 NVSNAAAVALYITQNH 279 NV+ A A+ + Sbjct: 234 NVAIATAIVCSEFRRQ 249 >gi|25011695|ref|NP_736090.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae NEM316] gi|24413235|emb|CAD47314.1| Unknown [Streptococcus agalactiae NEM316] Length = 247 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 10/230 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + + G H A ++ + + T+ A+ RL P V + ++ Sbjct: 25 RKSSYLIEGWHLFEEAEKYGAQFLN-IFVTETAIDRLR------KPEEAIVVTDDVLKEL 77 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + QG+ E A + D + L++ + V DP N+G ++R+A A + D + Sbjct: 78 TDSQ-TPQGIVAEIAFQETRWTDIKKGRFLVL--EDVQDPGNLGTMVRTADAANFDAVFL 134 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 +++ + + +S G+ H+P R+ S+ + Sbjct: 135 SQKSADLYNQKTLRSMQGSHFHLPVFRVEIEQFVNFCKAEGITMIATTLSEQSVNYKNLP 194 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K D ALI+G EG+G+ E A +AH+ MPG ++LNV+ AA V ++ Sbjct: 195 KYDHFALIMGNEGQGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIF 244 >gi|319953770|ref|YP_004165037.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM 14237] gi|319422430|gb|ADV49539.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM 14237] Length = 240 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 31/252 (12%), Positives = 90/252 (35%), Gaps = 20/252 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K ++ + + + G+ T+ L + S +++ + +T + + + Sbjct: 6 QIKLIKSLQLK-KNRNLHQLFVVEGLKTIQELLKS-SFEVYSVFSTDDHFVEENSAFSAL 63 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + +V + + + G + ++ +D + DP N+G Sbjct: 64 ----ISSVDLKKMSSL----NTPNGYLGVFKMSQKKAIHDNAW---VVAVDTIQDPGNLG 112 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R F ++ + + + ++ G++ + ++ + + Sbjct: 113 TIIRLCDWFGIKDLVCSSDTVDCYNPKVIQATMGSITRVNVTYLNLIDFLEETGLPIYGA 172 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVS 266 + + + K L++G E G+ + ++ + G ++LNV+ Sbjct: 173 FMDGETVYTSQM-----PVKGILVMGNEANGVSAEVEKLVQKRIAIPQFGAQTAESLNVA 227 Query: 267 NAAAVALYITQN 278 A A+ L + Sbjct: 228 TATAILLNEIRR 239 >gi|300769739|ref|ZP_07079621.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300492647|gb|EFK27833.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 261 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 121/245 (49%), Gaps = 11/245 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTV 96 + Q F+ G H AA+ + + K+F + + V+ V Sbjct: 8 SNNEQDQTAADFVIGRHPAMAAIKSDQQINKVFIQSGLQADVLNDIAKIAKKRNLIVQYV 67 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGA 149 P Q +D++ A HQG+A+ A T+D + ++LD++ DPHN+G+ Sbjct: 68 PKQKLDRLTD-NANHQGVAVGVAAFEYATIDDLFAVAKAKNEAPFFLILDNIEDPHNLGS 126 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A GII KR + ++ +AK+++GA+EH+ R++NL ++++ G Sbjct: 127 IMRTADAAGAHGIIIPKRRAVGLTSTVAKTSTGAIEHVKVARVTNLVQTVKQLQEAGLWI 186 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + + + + + LI+G EGKG+ P +++ M + M G +++LN S AA Sbjct: 187 FGTDMNGTDYRQWD-ASGAVGLIIGNEGKGISPLLKKSVDEMLTIPMIGHVQSLNASVAA 245 Query: 270 AVALY 274 ++ +Y Sbjct: 246 SLLIY 250 >gi|28377488|ref|NP_784380.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum WCFS1] gi|254555718|ref|YP_003062135.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum JDM1] gi|308179699|ref|YP_003923827.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270320|emb|CAD63221.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum WCFS1] gi|254044645|gb|ACT61438.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum JDM1] gi|308045190|gb|ADN97733.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 255 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 121/245 (49%), Gaps = 11/245 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTV 96 + Q F+ G H AA+ + + K+F + + V+ V Sbjct: 2 SNNEQDQTAADFVIGRHPAMAAIKSDQQINKVFIQSGLQADVLNDIAKIAKKRNLIVQYV 61 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGA 149 P Q +D++ A HQG+A+ A T+D + ++LD++ DPHN+G+ Sbjct: 62 PKQKLDRLTD-NANHQGVAVGVAAFEYATIDDLFAVAKAKNEAPFFLILDNIEDPHNLGS 120 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A A GII KR + ++ +AK+++GA+EH+ R++NL ++++ G Sbjct: 121 IMRTADAAGAHGIIIPKRRAVGLTSTVAKTSTGAIEHVKVARVTNLVQTVKQLQEAGLWI 180 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G + + + + + LI+G EGKG+ P +++ M + M G +++LN S AA Sbjct: 181 FGTDMNGTDYRQWD-ASGAVGLIIGNEGKGISPLLKKSVDEMLTIPMIGHVQSLNASVAA 239 Query: 270 AVALY 274 ++ +Y Sbjct: 240 SLLIY 244 >gi|19552052|ref|NP_600054.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032] gi|62389715|ref|YP_225117.1| 23S ribosomal RNA methyltransferase [Corynebacterium glutamicum ATCC 13032] gi|145294994|ref|YP_001137815.1| hypothetical protein cgR_0939 [Corynebacterium glutamicum R] gi|21323591|dbj|BAB98218.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032] gi|41325050|emb|CAF19531.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Corynebacterium glutamicum ATCC 13032] gi|140844914|dbj|BAF53913.1| hypothetical protein [Corynebacterium glutamicum R] Length = 276 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 55/287 (19%), Positives = 105/287 (36%), Gaps = 25/287 (8%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 +IS ++ ++D +++ R + K + G V L Sbjct: 6 VISDPADPRLDDVRDLNHSDSRPDLPGGK---------------GLVVAEGPLVVGRLLE 50 Query: 63 NPSRKIFQLLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + ++ KN L DA+L PV V + + ++ G + LA Sbjct: 51 SRY-PVRAIVGFKNKLDSFLDSIDASLVEGIPVYEVSRELLAEVAGFDMHRGLLATADRT 109 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + N++ ++VL+ V D NIG++ R+A D I+ + + + + Sbjct: 110 EEASVAQVLENARTVVVLEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVS 169 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK------NDKIALILG 234 G + +P+ + Q+ + E E DK+AL++G Sbjct: 170 MGHVLRLPFAHLEGTYTTWQRSLEQLKEAGFHLVSLTPDPEAEHLEDALAGKDKVALLVG 229 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HF 280 AEG GL A + M +LN++ +AA+A Y Sbjct: 230 AEGPGLTEHAMRATDVRARIPMAPGTDSLNLATSAAIAFYERDRSQR 276 >gi|331703851|ref|YP_004400538.1| tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802406|emb|CBW54561.1| tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 244 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 93/240 (38%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG H V L + ++ L L+ V V +D+++ + Sbjct: 5 LIYGKHVVFELLKKHQNMVKEIWV--KDLKILNEFDLKNTKIKVNVVSENKLDQLLETQT 62 Query: 110 VHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + + + + L+++LD ++DP+N GAI+RS + DGII Sbjct: 63 QHQGIIAQIKDYNYTSFNQLINDLNTKEKSLVLILDQIHDPYNFGAIIRSCSLLNVDGII 122 Query: 164 T-TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 K+ S VL S+ A + ++ + + + + + Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFNIKISKTNNLNNAIKILKNNGFWIYATNLNQNSIDMTK 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +K A+I+G E KG+ + + ++ I + N S A ++ + N+ K Sbjct: 183 TQFANKTAVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242 >gi|255583237|ref|XP_002532383.1| RNA binding protein, putative [Ricinus communis] gi|223527907|gb|EEF29995.1| RNA binding protein, putative [Ricinus communis] Length = 342 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 50/285 (17%), Positives = 100/285 (35%), Gaps = 26/285 (9%) Query: 18 SHYAKL-RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA------LNNPSRKIFQ 70 +H + ++ K Q S + + + G + L + ++ Sbjct: 52 THIKSITSTSNPFIKHCVKLRQSSPYRHAHGSALVVGTTPIREICKFQKSLKEETVEMEC 111 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD--- 127 L+ A D++ V + + + ++ E++ ++ D Sbjct: 112 LILPDKAKVPEGLDSSSTRTLRVSALVMKRLSQLQSTESIEAIALMKFPTSYFVVGDHQK 171 Query: 128 ------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 + ++VL+ + DP N+G ++RSAVAF GI + K++ Sbjct: 172 DADFRKWFPSPHRILVLEGIQDPGNLGTLVRSAVAFRWGGIFLLPGCCDPFNDKALKASR 231 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---------KIALI 232 GA +P + S K G + + + I L+ Sbjct: 232 GASFQVPIVSGSWHHLEALKDEFQMKMLAGHPASDDEQTPVSELSQGFADSLADIPICLV 291 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 LG EG+GL K+ + + + M ++LNV+ A + LY+ Q Sbjct: 292 LGNEGQGLSEKSLQEC-QLVSIPMARNYESLNVAVAGGIFLYMLQ 335 >gi|226196377|ref|ZP_03791959.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei Pakistan 9] gi|254297770|ref|ZP_04965223.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 406e] gi|157807881|gb|EDO85051.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 406e] gi|225931594|gb|EEH27599.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei Pakistan 9] Length = 231 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 6/211 (2%) Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-----PLLSPTLDAV 129 ++ + A + + + E HQG+ L+ LD + Sbjct: 18 RDRRMQDFLQAAKEAGVRLIAADETRLWGLAHTER-HQGVVARVEDLPLAQNLAELLDGI 76 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 LL+VLD V DPHN+GA LR A A II + + +A AK ASGA + +PY Sbjct: 77 AGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAPRDRAAGLNATAAKVASGAADTVPY 136 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I ++NL AL+++ G IG S D+ + + +AL++GAEG+G+R T++T Sbjct: 137 ITVTNLARALRELKDAGVWVIGTSDDATASVYDTKLDGPVALVMGAEGEGMRRLTRDTCD 196 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G +++LNVS A+ V LY Sbjct: 197 EVMFIPMAGSVESLNVSVASGVCLYEAVRQR 227 >gi|58698910|ref|ZP_00373774.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Drosophila ananassae] gi|58534575|gb|EAL58710.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Drosophila ananassae] Length = 236 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 126/226 (55%), Gaps = 9/226 (3%) Query: 58 SAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGL 114 +AL N +R+ +LLAT+N + V+ V + ++ ++ K A HQG+ Sbjct: 1 MSALKNKNRRCIELLATENFYREHKKEIRQCVDSKGIKVRLVESKILNDVLPKGANHQGI 60 Query: 115 ALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 AL AP+L ++ +S +++LD V D HNIG+ILR++ F+ D ++ +S Sbjct: 61 ALNVAPILYNLSIEEIAESSNDSSTIVILDQVTDTHNIGSILRTSACFNVDALVLPHNHS 120 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDK 228 PSE+A +AK+ASGAL+ +P I ++N+ +Q + G+ G ++K+ +++ K Sbjct: 121 PSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGFDCNTKENIDEIKSFEKK 180 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +I G+E KG+R +E + + M I +LNVSNAAA+ LY Sbjct: 181 RVIIFGSEEKGVRRLVKENCDYLLKIPMSNAINSLNVSNAAAIGLY 226 >gi|308176903|ref|YP_003916309.1| RNA methyltransferase [Arthrobacter arilaitensis Re117] gi|307744366|emb|CBT75338.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117] Length = 292 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 93/283 (32%), Gaps = 28/283 (9%) Query: 26 NHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQLLATKNALAR 80 ++ +++++ + KS+ + G V AL + + L Sbjct: 10 SNPRAERVKAIARLAKSKGREATGEYLVEGPQAVREALKAHLEDDNLVQNVYVVGGFLES 69 Query: 81 LDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + L ++ V + + + + LA+ + +L+ VL Sbjct: 70 HEEFETLLEDAKIQPRIVTGEVLHAMADTQTPQGILAVVAMSQPQLSEVLDTKPKLIAVL 129 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD- 197 + DP N G ILR+A A D +I TK + +S G+L H+P + Sbjct: 130 CRIQDPGNAGTILRAADAAGADAVILTKGSVDIYNPKAVRSTVGSLFHLPVLNNVEFDHL 189 Query: 198 -------------------ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 ++ P Q + + G EG+ Sbjct: 190 IAAAKTTGSQVLAADGYAAHNLDTLQDAAVLRANQPGTEAPEGQPVLEAPTLWLFGNEGQ 249 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HF 280 GL ++ A + + G+ ++LNV A+ V LY + Sbjct: 250 GLDEHEKQAADYRVAVPLYGVAESLNVGTASTVCLYASARAQR 292 >gi|312113910|ref|YP_004011506.1| RNA methyltransferase, TrmH family, group 3 [Rhodomicrobium vannielii ATCC 17100] gi|311219039|gb|ADP70407.1| RNA methyltransferase, TrmH family, group 3 [Rhodomicrobium vannielii ATCC 17100] Length = 310 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 100/305 (32%), Positives = 142/305 (46%), Gaps = 28/305 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRD-------------YKKMQSFNQKSRHTSQPE 47 M I K + + A ++ + + + +R Sbjct: 1 MTRIVKPSKPRHDESRKQGRAAGAKDADTGPRDGAPKQEAWAFSRFGDSRKSARRPKTAG 60 Query: 48 NLF--------LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 F LYG+H+V AAL NP R+I T+NA ARL + P Sbjct: 61 ESFAKLAAGETLYGLHSVEAALANPKRRIRHAWLTENAAARLAPLLD-ARKIAATLALPA 119 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSA 154 +D + G AVHQG L+ PL P LD +++LD V DPHN+GA+LRSA Sbjct: 120 DLDALTGPGAVHQGAVLQVEPLAQPGLDDFLDALGDAPATVVILDQVTDPHNVGAVLRSA 179 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AF +I R+SP +A LAKSASG LEH+P I + NL L+K+ F IG S Sbjct: 180 AAFGIGALIVQDRHSPPLTAALAKSASGGLEHVPVIEVVNLARVLEKLKERDFLCIGFDS 239 Query: 215 DSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + + + +A + GAE KGLR +E ++A L PG IK+LN+SNAAA+ Sbjct: 240 EGAQRFDAALAGGRRVAFVFGAEDKGLRRLVREGCDAIAALSAPGPIKSLNISNAAAIVF 299 Query: 274 YITQN 278 + Sbjct: 300 HARAQ 304 >gi|294811657|ref|ZP_06770300.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|326440159|ref|ZP_08214893.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064] gi|294324256|gb|EFG05899.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 278 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 89/269 (33%), Gaps = 11/269 (4%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA--LNNPSRK-IFQLLATKNALA 79 + + +++ + G V A + + +L AT A Sbjct: 7 ISPRSPRVAAARRLAKRN-FRGKDRLFLAEGPQAVREAAGHRSGGEPTLTELFATVEAAE 65 Query: 80 RLDWDANLPHPFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137 R I I + + L+ V Sbjct: 66 RYADIVGAARAAGARVHLAGEDVITDISTTVTPQGLVGVCRFLDSPFDAVVRSRPTLVAV 125 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L +V DP N G +LR A A D ++ T + +++ G+ H+P + Sbjct: 126 LANVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKAVRASVGSHFHLPVAVGVPVER 185 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAH 253 A+Q + G + + + L+ E A I G E GL +T+ A ++ Sbjct: 186 AVQGLREAGVRILAADGAGEHDLDAELDAGTMGGPTAWIFGNEAWGLPEETRALADAVVR 245 Query: 254 LHMPGIIKALNVSNAAAVALYITQN-HFA 281 + + G ++LN++ AAAV LY + Sbjct: 246 VPIHGRAESLNLATAAAVCLYASARAQRT 274 >gi|295114857|emb|CBL35704.1| rRNA methylases [butyrate-producing bacterium SM4/1] Length = 281 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 90/245 (36%), Gaps = 8/245 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + +P + AL+ I L+ TKN + PV T + Sbjct: 37 YEPEPGIFIAESPKVIERALDAGYEPISLLMETKNVEGQGREVIARCGHIPVYTAQFDVL 96 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++ G + L + ++ ++VL++V +P N+GAI RSA A D Sbjct: 97 TRLTGFQLTRGVLCAMRRKRMPEACSICAGARRIVVLENVMNPTNVGAIFRSAAALGMDA 156 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK--------MHSWGFQTIGLS 213 ++ T S + + G + IP+ + M Sbjct: 157 VLLTLGCSDPLYRRAVRVSMGTVFQIPWTFFDGKKVKWPENGQELLREMGFKTAAMALSD 216 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + +K+A+I+G EG+GL +T + + + M + +LNV+ A+AVA Sbjct: 217 DSVSIDEPALRREEKLAVIMGTEGEGLCAQTIRESDYVVRIPMSHGVDSLNVAAASAVAF 276 Query: 274 YITQN 278 + Sbjct: 277 WQLGR 281 >gi|225631081|ref|ZP_03787814.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591226|gb|EEH12375.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 257 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 136/246 (55%), Gaps = 12/246 (4%) Query: 41 RHTSQPENLFLYGV---HTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVK 94 + + EN +LY HT +AL N +R+ +LLAT+N + V+ Sbjct: 2 KSSKTNENFWLYXXXXXHTCMSALKNKNRRCIELLATENFYREHKKEIRQCVDSKGIKVR 61 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGA 149 V + ++ +V K A HQG+AL AP+L ++ +S +++LD V D HNIG+ Sbjct: 62 LVENKILNDVVPKGANHQGIALNVAPILYNLSVEEIAESSNDSSTIVILDQVTDTHNIGS 121 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ILR++ F+ + ++ +SPSE+A +AK+ASGAL+ +P I ++N+ +Q + G+ Sbjct: 122 ILRTSACFNVNALVLPHNHSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWC 181 Query: 210 IGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G ++K+ +++ K +I G+E KG+R +E + + + +I +LNVSNA Sbjct: 182 YGFDCNAKENIDEIKSLEKKRVIIFGSEEKGMRRLVKENCDYLLKIPISNVIDSLNVSNA 241 Query: 269 AAVALY 274 AA+ LY Sbjct: 242 AAIGLY 247 >gi|219128759|ref|XP_002184573.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404023|gb|EEC43972.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 343 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 93/283 (32%), Gaps = 20/283 (7%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--IFQLLA 73 ++S +++ KK+Q+ K + + + G V L P + + Sbjct: 54 RESTLISSTKSN-TVKKIQALLNKRKKRLEQRETVVEGPRMVVDLLKQPQTHHLVRSIFI 112 Query: 74 TKNALARLDWDANLPHPFPVKT------VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 + + + V P LA+ P+ S Sbjct: 113 ASDKWEQYYPEILRAVGEDESRLPLTLPVTPPVFAACSDTITPQGILAITEIPIFSLERR 172 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-- 185 + L +VLD V+DP N+G +LRS+VA G++ + +SA G Sbjct: 173 DAPQNPLYLVLDGVSDPGNLGTLLRSSVATGVAGVLLLPGSCDPWAPKAIRSAMGTTFQI 232 Query: 186 ---HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 +++ T+ + E + ALI+G+EG GL Sbjct: 233 PVETFENWDECREKLVHLGCNNFWAATMLEDGVGRSHYEVNWLSGPNALIIGSEGNGLTK 292 Query: 243 KTQETATSM------AHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ ++ M I++LN + +V L+ Sbjct: 293 PIRDDLAVTSPRLKSVYVPMKAGIESLNAAVCGSVILFEYMRQ 335 >gi|325962866|ref|YP_004240772.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3] gi|323468953|gb|ADX72638.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3] Length = 303 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 87/276 (31%), Gaps = 27/276 (9%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN--------NPSRKIFQLLATKNALAR 80 + + + + + G V AL + ++ A++ L R Sbjct: 19 RVRDVAKLAGRP-ARLKRGHFLAEGPQAVREALKLHQQRLASGGPGVVSEVFASEACLDR 77 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 L + + + +A+ + +L+ VL Sbjct: 78 FPEFEELSQGVNARLATDDVLAAMADTVNPQGIIAVCRFVDVPLEEVLDGGPRLIAVLCQ 137 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N G +LR+A + D ++ T + +S +G+L H+P + +++ + Sbjct: 138 VRDPGNAGTVLRAADSAGADAVVLTASSVDIYNPKAVRSTAGSLFHLPVVLGADVGELAA 197 Query: 201 KMHSW------------------GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + ++ P A + G E +GL Sbjct: 198 ACRARGIGILAADGYGSLNLDTLQDESARRRLTGAGPSSTYALEQPTAWLFGNEAQGLSE 257 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + A + + G ++LN+ AA V LY + Sbjct: 258 EELALADHRVAVPVYGSAESLNLGTAATVCLYASAR 293 >gi|332291128|ref|YP_004429737.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] gi|332169214|gb|AEE18469.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] Length = 246 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 44/253 (17%), Positives = 94/253 (37%), Gaps = 16/253 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K++ S QK ++ + G+ V LN+ + ++ A+ + N Sbjct: 6 TIKRITSLGQK-KYRQRERVFVAEGIKVVHELLNSDLELVELYAEDVSSFAKALQNKNQA 64 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V+ V + KI + + A P + S L ++LD V DP N+G Sbjct: 65 ---IVEEVSTADLKKITFLKTTQK----AVATFRMPEAAQLDRSGLTLLLDDVRDPGNLG 117 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R F ++ + + + ++ G+L + I L++ + Sbjct: 118 TIIRLCDWFGIKQLVCSIGTVDCYNPKVVQATMGSLTRVDVIY-----TNLEEYLENDSR 172 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNV 265 + + + + +I+G E G+ +T+ ++ + G ++LNV Sbjct: 173 EVFGTFMDGTNIYNTSLPAEGVIIMGNEANGISRETEAVVSNRIAIPRFGDLQETESLNV 232 Query: 266 SNAAAVALYITQN 278 + A A+ L + Sbjct: 233 ATATAICLSEFKR 245 >gi|300022376|ref|YP_003754987.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans ATCC 51888] gi|299524197|gb|ADJ22666.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans ATCC 51888] Length = 269 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 98/280 (35%), Gaps = 25/280 (8%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 +I+ ++++ +++ K+ + G + A Sbjct: 5 KIITSLTNDRVKAIRALEMRKV-------------------RKETGLFVAEGASLLITAR 45 Query: 62 NNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 +N + + ++ + R L V V + K+ K+ L + Sbjct: 46 DNGFVPETLVYQSGTAESGITRGLVTHALNAGAEVLEVSEAVLGKLASKDNPQTVLGVFR 105 Query: 119 APL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 P V + + L+ + DP N+G I+R+A A C G+I S Sbjct: 106 QRFAEPPPAPKVNAGETWVALEEIRDPGNLGTIVRTADATGCAGVILVGTTCDPYSLDAV 165 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 ++ G++ + A + + + + + + + + +++G EG Sbjct: 166 RATMGSIF--AVPIVKMERSAFISLQRAWAGDVIGTHLTAREDFRSLYREPQLIVMGGEG 223 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 GL + + T + + M G + +LN++ A + LY + Sbjct: 224 PGLSSEAAASCTKLVKIPMAGKLDSLNLAVATGLMLYQIR 263 >gi|78185098|ref|YP_377533.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9902] gi|78169392|gb|ABB26489.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9902] Length = 279 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 78/270 (28%), Gaps = 17/270 (6%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R + K+++ + + + L G H + L + + D Sbjct: 8 SRRNPLVKRLRMLSSRP-GRDAEGLILLEGTHLLQELLWIGGQPTELIATEAWFDRHADL 66 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 L + V + + + ++ + + +VLD + D Sbjct: 67 IQALDASVVWRRVTEAVLGASLSTVTP---DGVACLCPITLLPEPPKACDFWLVLDRIQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPS-------------ESAVLAKSASGALEHIPYI 190 P N+G++LRSA+A + P + Sbjct: 124 PGNLGSLLRSALAADVQSVWMGSGVDPLGGKVLRASAGALLQLPHRRFGPEQEKAIDDLD 183 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + + A P + AL+LG EG GL P+ Q T Sbjct: 184 QALRVLVAQGIQVVATLVPDASGPLPPIPYWELDWTKPTALVLGTEGAGLHPRLQACCTH 243 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L +++LNV+ AA L + Sbjct: 244 AVTLPHSSRVESLNVAAAAVPLLLERRRAR 273 >gi|171743049|ref|ZP_02918856.1| hypothetical protein BIFDEN_02175 [Bifidobacterium dentium ATCC 27678] gi|171278663|gb|EDT46324.1| hypothetical protein BIFDEN_02175 [Bifidobacterium dentium ATCC 27678] Length = 288 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 90/267 (33%), Gaps = 22/267 (8%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL----LATKNALARLDWDA 85 Y + ++R + AL + I L + + D Sbjct: 17 YTNLTEIQLRNRLEPSKGLFIAESPKVIDRALASGREPISLLVEEPWIDGMSRTFVCIDE 76 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + PV P+ + ++ G LA L + R ++ + V++++ D Sbjct: 77 HWGGDIPVYVASPEQLKRLTGYRLHRGALAAMRRWTLPSVEEVCRGARRIAVMENIVDHT 136 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA++RSA A D ++ T A+ + G + IP+ RI Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHYWPFTGM 196 Query: 206 GFQTIGLSSDSKKP------------------LEQEIKNDKIALILGAEGKGLRPKTQET 247 + + D++ALI G EG GL T Sbjct: 197 RELHDLGFTTVAMALEDDSVSLDELVRRLNNGPAETDHIDRLALIFGTEGDGLSHHTISR 256 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M + +LNV+ ++AVA Y Sbjct: 257 ADLTVKIPMSHSVDSLNVAASSAVAFY 283 >gi|89897126|ref|YP_520613.1| hypothetical protein DSY4380 [Desulfitobacterium hafniense Y51] gi|89336574|dbj|BAE86169.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 275 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 94/256 (36%), Gaps = 8/256 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + ++ ++R + + AL+ I L+ K + Sbjct: 18 FARLTETQLRNRLEPEIGIFIAESTKVIGLALDAGCEPISLLMERKYIAGQAHGIITRCG 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + G + L P L +A + + VL+ + D N+GA Sbjct: 78 DIPVYTADSNLLAGLTGFQLTRGVLCAMRRPHLPSVEEACAGASRVAVLEGIADSTNVGA 137 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY--------IRISNLTDALQK 201 I RSA A D ++ T + + G + +P+ +L+K Sbjct: 138 IFRSAAALGIDTVLLTPSCCDPLCRRAVRVSMGTIFQVPWARIGSESSQWPQQGMKSLRK 197 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + Q + +K+A++LG+EG GL P T A + M + Sbjct: 198 LGFKTVAMALNDNAVSIDDPQLMAEEKLAIVLGSEGNGLAPCTIADCDYTACIPMSHNVD 257 Query: 262 ALNVSNAAAVALYITQ 277 +LNV+ A+AVA + + Sbjct: 258 SLNVAAASAVAFWQLR 273 >gi|158336981|ref|YP_001518156.1| RNA methyltransferase [Acaryochloris marina MBIC11017] gi|158307222|gb|ABW28839.1| RNA methyltransferase, trmH family [Acaryochloris marina MBIC11017] Length = 279 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 77/252 (30%), Gaps = 5/252 (1%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLP 88 +++ R+ F+ GV ++ + + K LAR Sbjct: 20 RIKRLQTDRRYRDAQGACFIEGVRNFVHVSDSRLDIAVIVYSEKLLTAPLARKLVRRFRR 79 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 +V P+ I G+ + L ++LD V N G Sbjct: 80 SGVETISVSPEQFRGISQTHR-ASGIGAIIRQRWQRLPSITPSMGLWVILDRVRSLGNFG 138 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++R+ A + A AS ++ Q + Sbjct: 139 TLIRTLDAGGG-TGFILLNQAVDPYAPSTVRASMGSVFQQQFIRTHDQALSQWLQQHQGY 197 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 IG S D ++ L LG E GL PK + ++ + M G + +LNV+ A Sbjct: 198 VIGASPDGEENFHTFTYPKNTLLFLGEERTGLSPKQRSLCNTLLKIPMVGQVDSLNVAVA 257 Query: 269 AAVALYITQNHF 280 ++ +Y Sbjct: 258 GSLFIYEVLRSR 269 >gi|153855701|ref|ZP_01996715.1| hypothetical protein DORLON_02733 [Dorea longicatena DSM 13814] gi|149751924|gb|EDM61855.1| hypothetical protein DORLON_02733 [Dorea longicatena DSM 13814] Length = 289 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 58/262 (22%), Positives = 101/262 (38%), Gaps = 13/262 (4%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ ++ + +S AL+ + L+ K L + A L Sbjct: 31 YARLTEAQLLNKDHPEDGLFIAESPKVISRALDGGYELVSVLVEKKQVLEDAETIAVLGK 90 Query: 90 --PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 PV T + + K+ G + L L + + VL++V +P N+ Sbjct: 91 CGNVPVYTAEFEVLTKLTGFKLTRGMLCAMKRRRLPGLQEICSGCDRIAVLENVMNPTNV 150 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RSA A D +I T S ++ + G + IP+ + N ++ Sbjct: 151 GAIFRSAAALHMDAVILTGGCSNPLYRRASRVSMGTVFQIPWTFVDNSVIWPEEGMKILR 210 Query: 208 QTIGLSSDS-------KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + ++ + +K DK+A+ILG EG GL P+T + M + Sbjct: 211 ELGFKTAAMALKEDSASIDDPELMKEDKLAVILGTEGDGLAPETIADCDYTVMIPMSHGV 270 Query: 261 KALNVSNAAAVALYITQNHFAK 282 +LNV+ A+AVA + K Sbjct: 271 DSLNVAAASAVAFW----QLGK 288 >gi|227504260|ref|ZP_03934309.1| rRNA methylase [Corynebacterium striatum ATCC 6940] gi|227199147|gb|EEI79195.1| rRNA methylase [Corynebacterium striatum ATCC 6940] Length = 270 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 49/263 (18%), Positives = 94/263 (35%), Gaps = 10/263 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 ++ N+ + S + G H V + L + ++ + L + Sbjct: 8 PLDPRLDDVRDLNKSDK--SGEGLVIAEG-HLVVSRLAESRFPLRCIVGFGSKLDAYVEE 64 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 P P+ V +T+ ++ G + +A + +R ++ ++VL+ V D Sbjct: 65 YGDP-GCPMYEVTRETLAQVAGFDMHRGLVAAADRAAEPTLEEILRTAKTVVVLEGVGDH 123 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIGAI R+A D ++ + + + G + +P+ + Q+ Sbjct: 124 ENIGAIFRNAAGMDVDAVLLGSGAADPLYRRSVRVSMGHVLRLPFAHLDGGYTTWQRSLQ 183 Query: 205 WGFQTIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETATSMAHLHMPG 258 E K+AL++GAEG GL + A + M Sbjct: 184 VLRDANFRLVSLTPHPEAVHLAQALHGAEKVALLVGAEGPGLTEHAMKATDVRARIPMAP 243 Query: 259 IIKALNVSNAAAVALYITQNHFA 281 +LNV+ +AA+A Y Q Sbjct: 244 GTDSLNVATSAAIAFYERQRSRI 266 >gi|332670159|ref|YP_004453167.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484] gi|332339197|gb|AEE45780.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484] Length = 274 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 106/267 (39%), Gaps = 18/267 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-- 86 K +++ + S+ + G V A+ + ++ L T +A AR Sbjct: 11 RVKAVRALAGRP-ARSRSGRFLVEGPQAVREAVREQAVRVHDLYVTDDAAARYREIVADA 69 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 + V+T + +D + + + ++ +L+ VL HV DP N Sbjct: 70 VARGVVVRTGSAEVLDAMSADA--QGLVVVADLVAVALEDVVAPGPRLVAVLAHVRDPGN 127 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 GA++R+A A DG++ T+ + + +S +G+L H+P + L A+ + + G Sbjct: 128 AGAVVRAADAAGADGVVLTRESVDVHNPKVVRSTAGSLFHLPVATGAELPAAVAALRARG 187 Query: 207 FQTIGLSSDSKKPLEQE------------IKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + ++ A + G E GLR + + A ++ + Sbjct: 188 VTVLAADGTGEHDIDDLLDVAGAAPAGVPDLAAPTAWVFGNEAWGLRDEDRALADAVVRV 247 Query: 255 HMPGIIKALNVSNAAAVALYITQN-HF 280 + G ++LN++ AA V LY + Sbjct: 248 PIRGRAESLNLATAATVCLYASARAQR 274 >gi|206895377|ref|YP_002246755.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM 5265] gi|206737994|gb|ACI17072.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM 5265] Length = 253 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 91/275 (33%), Gaps = 36/275 (13%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ KI +K + + L G + A Sbjct: 1 MRFIESPKNPKIKEIKK------------------LLSSKKARDEKGQFVLEGPKAIEAY 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + + L ++ D + V P ++ + +A A Sbjct: 43 VQSGGKVLELLY------SKDAKDLPKVNAV-VTQCAPGVMEAVSDVAGDQGVIA--IAQ 93 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T V + ++VL+ + DP N+G ILR+A AF I+TT V+ A Sbjct: 94 KRDWTPQQVLKRKRIVVLEQLQDPGNLGTILRTAAAFDYGVILTTGSADVYNPKVVRALA 153 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 + + +++ A++LG EG+GL Sbjct: 154 GN-------FLAPFVYVTGGEALELCKNLFVVTTYKSSEKPDFKWRQPFAIVLGNEGQGL 206 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + A + A + +++LNVS +A+ ++ Sbjct: 207 TESWRRIAKANAWIP--SKVESLNVSVTSAILMWE 239 >gi|160946411|ref|ZP_02093620.1| hypothetical protein PEPMIC_00371 [Parvimonas micra ATCC 33270] gi|158447527|gb|EDP24522.1| hypothetical protein PEPMIC_00371 [Parvimonas micra ATCC 33270] Length = 261 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 105/256 (41%), Gaps = 11/256 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ YK +S K ++ + + L G +S AL N + I ++ T+ + ++ Sbjct: 17 SKDNKKYKLFKSLYLK-KNRDKYKLFLLEGKKLLSEAL-NENLDIENIICTEKFVENFEF 74 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 N V + + + + +++ + +S+ ++ L++V+D Sbjct: 75 KENFLD--KVIILSEKLFKNL-----TELTNSEGVITIVNYIEEKKISSKNIICLENVSD 127 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N G I+R+A AF + I+T + A+ I + + Sbjct: 128 PGNFGTIIRTANAFGINDILTIN--CVDKYNSKVLRATMGAIFRTNIIDCKIEKIKELQS 185 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 S + K LE+ + K +++G E G+ + + + + + M +++L Sbjct: 186 GGYRLISTTLSKNSKFLEEFTFDGKNIVVMGNEANGISAEMLKISNNHLKIDMDNSMESL 245 Query: 264 NVSNAAAVALYITQNH 279 NVS AAA+ +Y + Sbjct: 246 NVSIAAAIIMYKIFKN 261 >gi|85373568|ref|YP_457630.1| rRNA methylase [Erythrobacter litoralis HTCC2594] gi|84786651|gb|ABC62833.1| rRNA methylase [Erythrobacter litoralis HTCC2594] Length = 262 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 93/230 (40%), Positives = 141/230 (61%), Gaps = 3/230 (1%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + + P ++ L+G H V AAL NP+R +L AT+ +A LD + LP FPV+ Sbjct: 21 RGSGRATPGHVRLWGRHAVEAALLNPARVHRKLWATREGVASLDGE--LPPDFPVEYADV 78 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + ++V ++A HQGL LE L +D V + +++LD V DPHN+GAILRSA AF Sbjct: 79 TDLARLVARDAPHQGLVLECEQLKDVYIDDVLEEGRPVVILDQVTDPHNVGAILRSAAAF 138 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 I+T R++P ES V+AKSASGALE +P++R+ NL AL + G+ IGL+ +++ Sbjct: 139 DAAAIVTQDRHAPPESGVVAKSASGALETVPWVRVVNLARALDTLAERGYWRIGLTGNTE 198 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L + + +AL+LGAEG+G+R + ++A L + I++LNVSN Sbjct: 199 ATLAEALPAGPVALVLGAEGEGMRHNIEAHCDALARLPISNAIESLNVSN 248 >gi|261749221|ref|YP_003256906.1| (guanosine-2'-O-)-methyltransferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497313|gb|ACX83763.1| (guanosine-2'-O-)-methyltransferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 259 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 45/254 (17%), Positives = 97/254 (38%), Gaps = 8/254 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++ +KS + F+ G+ A+ I ++ K + + + Sbjct: 11 KIKNLRKIYKKSSR----KIFFVEGIKEFEMAIKGNFFPI-EIFICKKIFHKYNLIKSFN 65 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVNDPHNI 147 H V + + K+ +E +AL L + + +++LD + P N+ Sbjct: 66 H--IVFFISIKAFKKLAYRENSGGIIALFKRKNLERLENIKIYKNPFILILDGIEKPGNL 123 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G++LR A A II + + + + + G++ + + Sbjct: 124 GSMLRIADAVGVHFIILCNIKTYIYNPNIIRCSLGSVFTNKILIEKKKSIISWLQKKKIE 183 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + L + + ++A++LG+E KG+ P A + + M G + +LNVSN Sbjct: 184 IVVTGFHEKAIQLYRTKFSSRLAIVLGSENKGVSPIWLNIAHKIVTIPMFGDMDSLNVSN 243 Query: 268 AAAVALYITQNHFA 281 A ++ +Y Sbjct: 244 AMSIMIYEVLRQRN 257 >gi|146329073|ref|YP_001209512.1| RNA methyltransferase [Dichelobacter nodosus VCS1703A] gi|146232543|gb|ABQ13521.1| RNA methyltransferase, TrmH family, group 3 [Dichelobacter nodosus VCS1703A] Length = 242 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 108/239 (45%), Gaps = 8/239 (3%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104 +++ G+H + ALN+ + + +L ++ ++ + TVP ID Sbjct: 3 TIWIGGIHALRQALNDGN--LLRLEVSEGKTSKNLASLVADAKAAQIEIITVPRHYIDHR 60 Query: 105 ---VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 V + + L + ++VLD + DPHN+GA LR+A+A D Sbjct: 61 LPDVRHQGIAGECRLSAQASNWQQAISGVERPFILVLDSIQDPHNLGACLRTAMAAGVDA 120 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ + + V+ K A GA E + R++NL ++ M G +G + +++K L Sbjct: 121 VVLPNSCAADITPVVRKIACGAAEALAIFRVANLKREVEMMKEKGLWVVGGAGEAEKSLF 180 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +I+G E KG+ ++T +A + M +++LNVS A + L+ + Sbjct: 181 DLDLSGGLVMIVGNEEKGIHYGLRQTCDWLAAIPMAETMESLNVSVACGIMLFEARRQR 239 >gi|308190283|ref|YP_003923214.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans JER] gi|319777677|ref|YP_004137328.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64] gi|307625025|gb|ADN69330.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans JER] gi|318038752|gb|ADV34951.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64] Length = 231 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 103/235 (43%), Gaps = 9/235 (3%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 E L++ G ++V AL I + +L ++ Sbjct: 2 EKLYVCGRNSVEDALKVN-LPIETIYVNS---FQLAQKLKQITKAKIEMKDNSFFANY-- 55 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + HQG+ L+ ++ ++VLDH+ DPHN+GAI+R+A +I Sbjct: 56 RNDNHQGVIAILRDFPIYDLETIKKDNPENVLVLDHIQDPHNLGAIIRTANTCGIKHLII 115 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223 +K S + ++ + K +SG ++ I++++++ L K+ W + + ++ + + Q Sbjct: 116 SKERSANITSTVLKVSSGGFVNMKIIKVNSISATLTKLKKWNYWIYVSALDETAQKVNQV 175 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 N L++G EG G+ T A + ++ G ++++NVS A + LY Sbjct: 176 TFNKPSVLVVGNEGDGVSKSTLNEADQVIYIPQKGSVQSMNVSVATGILLYELTK 230 >gi|302669499|ref|YP_003829459.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus B316] gi|302393972|gb|ADL32877.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316] Length = 269 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 86/234 (36%), Gaps = 2/234 (0%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + AL+ I LL P+ Q + +I G Sbjct: 36 GIFIAESPKVIGRALDAGYEPISLLLEKGQTEKEAAEIIERCENAPIYIAESQVLTQITG 95 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 L +L V+++ + VL++V +P N+GAI+R+A A D ++ T Sbjct: 96 FHLTRGVLCAMRRKVLPSVESLVKDAHRIAVLENVTNPTNLGAIVRNAAALGLDAVLFTH 155 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + A+ + G + IP+ + ++ + K + Sbjct: 156 GSTDPLYRRAARVSMGTVFQIPWTFLPEGSEIDTIKGLGFKTVAMALRNDTKDISDPELK 215 Query: 227 --DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 DK+A+ LGAEG GL P+T + M + +LNV+ +AVA + Sbjct: 216 NADKLAIFLGAEGDGLLPETIAACDCCVKIPMAHGVDSLNVAACSAVAFWELVK 269 >gi|254786479|ref|YP_003073908.1| RNA methyltransferase, TrmH family [Teredinibacter turnerae T7901] gi|237686026|gb|ACR13290.1| RNA methyltransferase, TrmH family [Teredinibacter turnerae T7901] Length = 258 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 91/239 (38%), Gaps = 10/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIVG 106 +YG AL + ++++L +++ + V + + I Sbjct: 20 IYGRKPCLEALQDKHVQVYRLHLSESNKPAPILDEIIALAKARGAEVLYHDKRQLSHISK 79 Query: 107 KEAVHQGLALE-----TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 QG+A++ D + LD V +P N+G I+RS A Sbjct: 80 NSKQDQGIAMDLVLAGFTEHEDYLADFTPGEHTFIALDSVTNPQNLGMIIRSVCASPATA 139 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I ++ A++ K+++G L P IR L LQ + G +GL+ D+K LE Sbjct: 140 LILPRKGCAKLDALVIKASAGTLFKAPVIRCDTLMSCLQAFKTKGACVVGLALDAKTSLE 199 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279 E +LG E G+ P + M +++LNV+ A++ + Sbjct: 200 NESSAGTRIYVLGNETDGISPDVSRLCDEQLKIPMRNGVESLNVAVTASLIAFRSLLRQ 258 >gi|159903237|ref|YP_001550581.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9211] gi|159888413|gb|ABX08627.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9211] Length = 413 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 79/289 (27%), Positives = 133/289 (46%), Gaps = 20/289 (6%) Query: 7 KKSEKIFSLKDSHYAKLR----RNHRDYKKMQSFNQKSRHTSQPEN---LFLYGVHTVSA 59 + S+K + S A++ R + ++ + Q S EN +G H A Sbjct: 98 RYSQKTDKPRRSLNARISPREIRRNDLNREEEVLVQNSGEIRNNENHLDDIFWGRHATQA 157 Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGKEAVHQGLA 115 L + R + ++ T + + L V+ V + I VHQG+A Sbjct: 158 ILESG-RPVHRIWCTAELRSSPKFLQLLKDSKSLGVLVEEVSWARLGYIT-HGGVHQGIA 215 Query: 116 LETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 L+TA + L + + +L+ LD + DPHN+GAI+RSA A G++ +R Sbjct: 216 LQTAASKTLDLQTLIDGCSQLGESSVLIALDGLTDPHNVGAIIRSAEALGAHGLVLPQRR 275 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S + +AK A+GALEH P R+ NL +L ++ G+ IGL+ D L + Sbjct: 276 SAGLTGSVAKVAAGALEHFPVARVVNLNRSLIELKDAGYSVIGLAGDGDFVLNEVDLLGP 335 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + L++G+E KGL T+ + + + G+ +LN S AA+++LY Sbjct: 336 LVLVIGSEDKGLSVLTRRNCDQLVRVPLRGVTSSLNASVAASISLYEIA 384 >gi|306820001|ref|ZP_07453651.1| 23S rRNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551949|gb|EFM39890.1| 23S rRNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 251 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 99/276 (35%), Gaps = 27/276 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++ I +K Q+ ++ + F G+ + + Sbjct: 1 MKYIQSIDNKYIKLVKSL-------------------QQGKYRQKNSMFFDEGIKNIELS 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + F L+ L V + I + QG+ Sbjct: 42 LKSNYKMNFVLIREDFKDTSLIKSLEEKLGEDKILVLNEKIFTSISDTVNSQGIIAVYDM 101 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + +++LD + DP NIG I+R+A +FS + I +K + S Sbjct: 102 KKDEDIKSDK----ILILDRIQDPGNIGTIIRTAESFSINTIFYSKGTADVFS----PKV 153 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 A Y D + K+ S G++ ++ + ++K+ALILG E G+ Sbjct: 154 VRATMGSIYFVNFVKLDDISKLKSEGYKIYASCLENAISSKSAFTDEKMALILGNESVGI 213 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + M G ++LNV+ A A+ +Y Sbjct: 214 SEDLINQSDKKIKIDMTGNAQSLNVATAGAILIYEM 249 >gi|303257674|ref|ZP_07343686.1| RNA methyltransferase, TrmH family, group 3 [Burkholderiales bacterium 1_1_47] gi|331000773|ref|ZP_08324422.1| RNA methyltransferase, TrmH family, group 3 [Parasutterella excrementihominis YIT 11859] gi|302859644|gb|EFL82723.1| RNA methyltransferase, TrmH family, group 3 [Burkholderiales bacterium 1_1_47] gi|329570505|gb|EGG52230.1| RNA methyltransferase, TrmH family, group 3 [Parasutterella excrementihominis YIT 11859] Length = 247 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 66/245 (26%), Positives = 114/245 (46%), Gaps = 9/245 (3%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTI 101 + E+ L G H VS+ + S I + ++ R + + + Sbjct: 2 KKEDTVLAGFHAVSSRMKRDSSSIRIVYYDPKRRDQRMRRMIEEIEKAGIRLMQADNNRL 61 Query: 102 DKIVGKEAVHQG-----LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 D E HQG ++ +D + + LL++LD V DP N GA LR A A Sbjct: 62 DGFS-HEVPHQGLIALAAPIDIGMSFDTLMDNLAGNPLLLLLDGVTDPRNFGACLRVADA 120 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +IT K S + +A K+++GA E +P +R++NL ++ ++ G IG + ++ Sbjct: 121 AGVSAVITPKDRSATLTAAAVKASAGASETVPIVRVTNLAGSIVELVDAGVPIIGTAGEA 180 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +K + + + +LGAEG GLR T+ + +A + M G +++LNVS AA + L+ T Sbjct: 181 QKTIYEFDQKGAFGWVLGAEGDGLRQLTRRRCSDLAKIPMLGTVESLNVSVAAGICLFET 240 Query: 277 QNHFA 281 Sbjct: 241 VRQRT 245 >gi|325285564|ref|YP_004261354.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489] gi|324321018|gb|ADY28483.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489] Length = 241 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 93/252 (36%), Gaps = 19/252 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K +++ QK ++ ++ + + G+ TV L N K + + T NA Sbjct: 6 QIKFIKNLQQK-KYRTENKLFVVEGIKTVKE-LVNAKVKPYAIYTTSNA-------VLED 56 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + F + + + KI + + LA+ P ++ L+ +D V DP N+G Sbjct: 57 NAFKCELISETDLKKISALKTPNNILAVFYQPKTKEIIEDN----WLVAVDDVRDPGNLG 112 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R F + +K+ + ++ G+L + + Q Sbjct: 113 TIIRLCDWFGVANLFCSKQTVDCYNPKTIQATMGSLARVNIVYGDLEAFLKQTNLPVYGA 172 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI--IKALNVS 266 + + K+ L++G E G+ +E T + G ++LNV+ Sbjct: 173 FMDGKNVYKEDFTA----QSGVLVMGNEANGVSKTVEELITKKISIPQFGNKTTESLNVA 228 Query: 267 NAAAVALYITQN 278 A A+ L + Sbjct: 229 TATAILLNEIRR 240 >gi|195440808|ref|XP_002068232.1| GK13008 [Drosophila willistoni] gi|194164317|gb|EDW79218.1| GK13008 [Drosophila willistoni] Length = 409 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 36/293 (12%), Positives = 88/293 (30%), Gaps = 27/293 (9%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 D + +L + + + + + + G + AL+ + + + K Sbjct: 116 DLEFVRLNLQDPLLSTLMITVRSRKRRDKNRQIIIEGRRLIREALSCGLKMQTLIFSQKE 175 Query: 77 ALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS- 132 LA L + L + VP + + + P A Sbjct: 176 QLALLREEVALAQQKTQTKIYKVPQHDLKTWSTLVTPPGVMGIFERPSSRGLETAKTTPT 235 Query: 133 ----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + +V D++ +P+N+G+I+R+ A C ++ + + G +P Sbjct: 236 SSSLPITVVCDNIREPNNLGSIIRTCAALPCHQVVVIHGSCDPWESKALRGGCGGQFRLP 295 Query: 189 YIRISNL------------TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 + + + + + + N LI+G E Sbjct: 296 IRDDIAWDDLALTIPPETADNCHVYIAENNLEKLAEHTAIEYADMPAAPNGHQILIIGGE 355 Query: 237 GKGLRPKTQETAT-------SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G+ + ++ + +LNV++A + L+ + + Sbjct: 356 SHGVSSEAYSFMNLVGQNKGKCVYIPLAEGTDSLNVASALTLLLFELRRKLKQ 408 >gi|297622073|ref|YP_003710210.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] gi|297377374|gb|ADI39204.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] Length = 243 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 53/252 (21%), Positives = 105/252 (41%), Gaps = 16/252 (6%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 H K++ + ++ + Q ++ + G V R + LL T + Sbjct: 8 QHPLIKRLTALRKERKMRQQEGSVVIEGKKLVRE----NVRLVRTLLTTS-----PSTEF 58 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 +LP V V P+ I KI G ++ LA P+ Q L+VL+++NDP Sbjct: 59 SLPESAEVYAVSPEMIQKISGVKSPEGVLAEV----KMPSFKLPARLQRLLVLENLNDPG 114 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ++R+++AF DG+ + +++ GA+ +P + + + Sbjct: 115 NLGTLIRTSLAFGWDGVFLLGNCCDPFNDKAIRASKGAIFKLPIVVGDLESLKTLLID-- 172 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 ++ ++ K + K K+AL+LG+E G + + + + +LNV Sbjct: 173 HQMSVFIADLEGKKIGAIPKVSKMALVLGSEAHGPSKEVISIG-ERLTIPISSGLDSLNV 231 Query: 266 SNAAAVALYITQ 277 + A + L+ Q Sbjct: 232 AVAGGILLHHFQ 243 >gi|124267154|ref|YP_001021158.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] gi|124259929|gb|ABM94923.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] Length = 261 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 93/257 (36%), Gaps = 8/257 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ +++ Q + ++L G H A ++ +++ + Sbjct: 10 SRDNALLVRLRKLAQDPGAYRKLGAVWLEGDHLCEACVSRGVVPAQAVVSEAGWVDPRLQ 69 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 P + V ++ G E+ + + + + A + +VLD + D Sbjct: 70 RLARAAP-RIAVVADALFAQLSGLESPARLGFVLDHATEATAVQAGVAT---VVLDRLQD 125 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G++LRSA A ++ K + S+ + ++ GA + + + + D Sbjct: 126 AGNVGSVLRSAAALGVAQVVALKGTAALWSSKVLRAGMGAHFALHLVESAEVGDLDALGV 185 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + +LG EG+G+ + + PG ++L Sbjct: 186 PLLATSSHAGLALAEGR----LPSPCGWVLGHEGQGVGKALLARCSETRRIPQPGGQESL 241 Query: 264 NVSNAAAVALYITQNHF 280 NV+ AAA+ LY + Sbjct: 242 NVAAAAAICLYESLRQR 258 >gi|300173976|ref|YP_003773142.1| TrmH family RNA methyltransferase [Leuconostoc gasicomitatum LMG 18811] gi|299888355|emb|CBL92323.1| RNA methyltransferase, TrmH family, group 3 [Leuconostoc gasicomitatum LMG 18811] Length = 252 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 116/245 (47%), Gaps = 13/245 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDK 103 + F+YG + AL +++I ++ ++ + ++ P +D+ Sbjct: 9 QTEFVYGHYASVEALK-GTQEINKVWLQTGLQDKIRNEVTQLAKKKGLVIQQAPKSKLDE 67 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + HQG+ L A T+D ++LD + DPHN+G+ILR+A A Sbjct: 68 LTD-GGNHQGVVLSVAAFNYATIDDLFENAKKHEAEPFFLILDGIEDPHNLGSILRTADA 126 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GII KR + +A +AK ++GA+EH+P R++NL + + ++ G G Sbjct: 127 AGVHGIIIPKRRAVQLTATVAKISTGAIEHVPVARVTNLVNTVSELKDRGIWVFGTDMAG 186 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + K ALI+G EGKG+ P ++ SM + M G +++LN S AA++ +Y Sbjct: 187 EDYRRWDAK-GATALIIGNEGKGISPLLKKKVDSMLTIPMTGHVQSLNASVAASLLMYQG 245 Query: 277 QNHFA 281 + Sbjct: 246 FSSRN 250 >gi|326329912|ref|ZP_08196227.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium Broad-1] gi|325952303|gb|EGD44328.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium Broad-1] Length = 267 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 98/254 (38%), Gaps = 4/254 (1%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY+ ++ + S G V A+ L L L D Sbjct: 16 ADYRDLRDVELRKSLESSEGLFLAEGEKVVRRAVTGGFEP-RSFLMAPKWLDGLA-DVLE 73 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P + + +++ G LA L + ++ ++VL+ + D N+ Sbjct: 74 STDAPCYVMSEKAAEEVTGFHVHRGALASLKRRPLPSVESVLEGARSVLVLEDIVDHTNV 133 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDALQKMHSW 205 GAI RS A D ++ R + K A GA+ +P+ R + Sbjct: 134 GAIFRSGAALGFDAVLLAPRCADPLYRRSIKVAMGAVFALPWTRLLDWYEALPSLSAAGF 193 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + L+ D+ + DK+AL+LG+EG GL P+ Q+ A A + M I +LNV Sbjct: 194 TTVALTLADDAVDIEKAVEGVDKVALVLGSEGHGLSPRWQQAADRRAIIPMSAGIDSLNV 253 Query: 266 SNAAAVALYITQNH 279 + A AVA Y+T Sbjct: 254 AAATAVACYVTARR 267 >gi|319790074|ref|YP_004151707.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio ammonificans HB-1] gi|317114576|gb|ADU97066.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio ammonificans HB-1] Length = 239 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 109/240 (45%), Gaps = 11/240 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD-WDANLPHPFPVKTVPPQTIDKIVGKE 108 +YGV+ V+ AL I ++ KN R + V Q + ++ K Sbjct: 2 VIYGVNPVAEALRAGY-PIMKIFVEKNFKDREKVLETARQAGIKVVKTTKQKLTELA-KT 59 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ +P+ + + + L+ LD + DPHN+GAI RSA AF GI+ Sbjct: 60 TKHQGIVALVSPVEPKPFEELAQKAVEENGYLLFLDRIEDPHNLGAIFRSADAFKVTGIV 119 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + S + + +AK+++GAL ++P+ +++ + + KPL + Sbjct: 120 IPRDRSVTVTETVAKTSTGALFYVPFAVVNSF-VTALREFKEMGGWLVGLEAGGKPLSKF 178 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNHFA 281 + L+ G+EG+GL T + + + M G + +LNVSNA A+ LY Q + Sbjct: 179 EFPFPLGLVAGSEGRGLSRSTVKQLDELVEIEMGGHVNSLNVSNAVAIGLYKVFCQRYIN 238 >gi|241563421|ref|XP_002401697.1| rRNA methylase, putative [Ixodes scapularis] gi|215501889|gb|EEC11383.1| rRNA methylase, putative [Ixodes scapularis] Length = 229 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 5/228 (2%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++YG H V +ALNNP R+I +L T+ D + L + V + K++ + Sbjct: 1 YYMYGKHPVFSALNNPKRQIENILCTREIF---DTNKKLIGTRSYEIVNNDILSKLLENQ 57 Query: 109 AVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 A +D + +LD + D NIGAI+RSA AF + II + Sbjct: 58 IHQGIAAKVRPIFSYNLENIDIKNPKCKIAILDQITDTQNIGAIIRSAAAFDINAIILPQ 117 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 SP+ES +AK+A G LE IP I+++NL + + GF IGL+ + ++ + Sbjct: 118 DNSPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSANDYFTDKLIS 177 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 DKIAL+ G+E KG+R +ET +A + + +++LNVSNAA++ + Sbjct: 178 DKIALVFGSEDKGMRRLVEETCDYLAKIPISKRVESLNVSNAASIIFH 225 >gi|225469664|ref|XP_002266337.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 459 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 53/287 (18%), Positives = 98/287 (34%), Gaps = 26/287 (9%) Query: 18 SHYAKL-RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN----NPSRKIF--Q 70 SH + ++ K S + + + G + R + Sbjct: 170 SHVKSITSPSNPFVKHCFKLRHSSSYRYSHGSALVVGTTPIREIYKFQQSTQERTVEMDC 229 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD--- 127 LL A D V ++ + + + E+V + D Sbjct: 230 LLILDKAEIPEGLDVFSVRLVRVSSMVMKKLSGLQSTESVEAIALMRIPTSFFSVNDDTY 289 Query: 128 ------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 ++ ++VLD + DP N+G +LRSA+AF G+ + +++ Sbjct: 290 EKDCRRWFQSPHRILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSGCCDPFNGKALRASR 349 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---------KIALI 232 GA +P + S + K G ++K + + L+ Sbjct: 350 GASFQLPIVSGSWIHLETLKNEFQMKMIAGHPDSNQKRKPVSPLSQGLADSLADVPLCLV 409 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 LG+EG GL K+ + + + M G ++LNVS A + LY+ Q Sbjct: 410 LGSEGSGLSEKSWQLC-ELVSIPMAGEFESLNVSVAGGIFLYMLQPQ 455 >gi|282882505|ref|ZP_06291126.1| RNA methyltransferase, TrmH family [Peptoniphilus lacrimalis 315-B] gi|281297647|gb|EFA90122.1| RNA methyltransferase, TrmH family [Peptoniphilus lacrimalis 315-B] Length = 247 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 36/255 (14%), Positives = 87/255 (34%), Gaps = 15/255 (5%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ YK ++ F QK ++ + + G A+ + + + + Sbjct: 8 SKDNKYYKYLKKFLQK-KYRYEENLFLVEGPIVFKEAIKYMTPSYIAI-----RDDKEEQ 61 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 +L P +KI ++ ++ + + + LD ++D Sbjct: 62 YKDLLGDRDYFIFPSHLFNKISDSQSPQGIISYFPMVHKKFQEKSGK----FLYLDKISD 117 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G I+R+A AF+ G+I ++ + ++ ++ +P + Sbjct: 118 AGNMGTIIRTADAFNLSGVIISEYSCDIYNPKTIRATMASIFRVPIYFLKEDELIKNNFK 177 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + L++G E G+ K E A + + + +L Sbjct: 178 IIVSALEDSKPIKECD-----LSGDLILVIGNEAHGVSQKILERANLKVKIPIRDSVDSL 232 Query: 264 NVSNAAAVALYITQN 278 N AA + Y Sbjct: 233 NAGVAAGIFAYEMSK 247 >gi|157828863|ref|YP_001495105.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801344|gb|ABV76597.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila Smith'] Length = 240 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 117/238 (49%), Gaps = 5/238 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ + V Sbjct: 2 QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIFETHKKLIGTRA---YEIVNN 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K++ + A +D + +LD + D NIGAI+RSA A Sbjct: 59 DILSKLLENQIHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAAA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F + II + SP+E+ +AK+A G LE IP I+++NL + + GF IGL+ + Sbjct: 119 FDINAIILPQDNSPNENGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ +DKI L+ G+E KG+R ET +A + + +++LNVSNAA++ + Sbjct: 179 NDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAASILFH 236 >gi|328943536|ref|ZP_08241001.1| RNA methyltransferase [Atopobium vaginae DSM 15829] gi|327491505|gb|EGF23279.1| RNA methyltransferase [Atopobium vaginae DSM 15829] Length = 372 Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 69/353 (19%), Positives = 122/353 (34%), Gaps = 81/353 (22%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQ-------------------SFNQKS------ 40 KK ++K +++++H+ + K+ + S ++S Sbjct: 17 KKPTKKNKNVQNAHFTSNEKGAPYKKRTRVSGDSGTRARSSSAHARSFSSQKRSSGASSA 76 Query: 41 --RHTSQPENL--FLYGVHTVSAALNNPSRKIFQLLATKN-------ALARLDWDANLPH 89 R + + G AL + +LL +N A Sbjct: 77 YMRPRRERGVRAPMIEGRRACFEALEA-HLPLKKLLVQENMNAALQTADVERLITCARER 135 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--------------------- 128 + V +D + A HQG+ E AP Sbjct: 136 GIACEYVKKSAMDSLSSHGA-HQGVMFEAAPFAYAEFGDVLAAIDRKGARATDASAADAS 194 Query: 129 ----------------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 + + L+++LDHV D N GAI+RSA +I Sbjct: 195 AADASAADAHELVTNTDNQTAAHKQASLVVLLDHVVDEGNFGAIVRSAEVVGASCVIIAN 254 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 S K+++GA+ H+P +++ NL A+ ++ GF IG S +++ + Sbjct: 255 ARCASVGVGAYKTSAGAVLHMPIVQVVNLARAIDELKEHGFWVIGASEHAQQTVWDAPFT 314 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K+ LI+G+E G+ Q+ + L G I++LNV+ AA V Y Sbjct: 315 GKVCLIMGSEENGISSLVQKKCDFICKLPQRGRIESLNVAQAATVMCYEWMRQ 367 >gi|195128039|ref|XP_002008474.1| GI11797 [Drosophila mojavensis] gi|193920083|gb|EDW18950.1| GI11797 [Drosophila mojavensis] Length = 412 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 90/289 (31%), Gaps = 24/289 (8%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + + +L + + + + + + + + G + AL + + + + K+ Sbjct: 119 NLEFLRLTLQDPLMSTLLTEVRSRKRHDKNKQIIVEGRRLIQEALQSGLKMLSLFFSQKD 178 Query: 77 ALARLDWDANLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 LA L + VP + LA+ P Sbjct: 179 QLALLRDQVAQAQQEQNTKIYKVPQHDLKTWSSLVTPPGLLAIFERPPPQGLQQRQDTDP 238 Query: 134 L--LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +V D++ +P+N+G+I+R+ A C ++ T + + G +P Sbjct: 239 LPITVVCDNIREPNNLGSIIRTCAAVPCSQVVVTHGCCDPWESKALRGGCGGQFRLPIHD 298 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-------------ALILGAEGK 238 + + T + P + + + LI+G E Sbjct: 299 DVTWEQLPLHIPAEVADTCHVFIAENNPSKTAKRAGRTVDYAELDQTGAHNVLIIGGESH 358 Query: 239 GLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G+ ++ + I +LNV++A + L+ + Sbjct: 359 GVSDDAYSFMKLVGDRGKCVYIPLAAGIDSLNVASALTLILFELRKKLI 407 >gi|327395414|dbj|BAK12836.1| 23S rRNA RlmB [Pantoea ananatis AJ13355] Length = 188 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 55/158 (34%), Positives = 82/158 (51%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P L L+VLD V DPHN+GA LRSA A +I K S +A K ASGA Sbjct: 30 PDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAGAHAVIVPKDRSAPLNATAKKVASGA 89 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 E++P IR++NL L+ + + +G + ++ + Q +AL++GAEG+G+R Sbjct: 90 AENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADHTVYQSKMTGPMALVMGAEGEGMRRL 149 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 T+E + + M G + +LNVS A V L+ Sbjct: 150 TREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRN 187 >gi|198463831|ref|XP_001352955.2| GA12757 [Drosophila pseudoobscura pseudoobscura] gi|198151430|gb|EAL30456.2| GA12757 [Drosophila pseudoobscura pseudoobscura] Length = 405 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 38/294 (12%), Positives = 94/294 (31%), Gaps = 28/294 (9%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + + +L + + + + + + + G + AL + + + K+ Sbjct: 111 NLEFVRLTLQDPLTSTLLTTVRSRKRRDKNRQIIIEGRRLIKEALQCGLKMSTLIFSQKD 170 Query: 77 ALARLDWDANLPHP---FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 LA L + + VP + LA+ P + + Sbjct: 171 QLALLKEEVAQAQQETHTKIYKVPQHDLKTWSSLVTPPGLLAVFDRPSEKGLEKNLAEQE 230 Query: 134 LL--------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L +V D++ +P+N+G+I+R+ A C ++ T+ + + G Sbjct: 231 RLGSQPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVITRGCCDPWESKALRGGCGGQF 290 Query: 186 HIPYIRISNLT-----------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 +P + D + + + + + LI+G Sbjct: 291 RVPIRDDVSWEELSMTIPADAADDCHVFIAESNKEKLANRRAIDYADIAQIGSHNLLIIG 350 Query: 235 AEGKGLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 E G+ + ++ + I +LNV++A + L+ + ++ Sbjct: 351 GESHGVSEEAYSFMNLVGGKGRCVYIPLAAGIDSLNVASALTLLLFELRRKLSQ 404 >gi|194874184|ref|XP_001973355.1| GG13393 [Drosophila erecta] gi|190655138|gb|EDV52381.1| GG13393 [Drosophila erecta] Length = 405 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 38/292 (13%), Positives = 93/292 (31%), Gaps = 28/292 (9%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + ++ +L + + + + + + + G + AL + L + K+ Sbjct: 108 NLNFVRLTLQDPLTSTLLTTVRSRKRRDKNRQIIVEGRRLIQEALQCGLKMEALLFSQKD 167 Query: 77 ALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 LA + + + + VP + + + P + Q Sbjct: 168 QLALVKEEVGMAQLGTGTKIYKVPQHDLKTWSSLVTPPGLMGIFDRPSDKGLEKNLAEQQ 227 Query: 134 LL--------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L +V D++ +P+N+G+I+R+ A C ++ T + + G Sbjct: 228 RLGSQPFPITVVCDNIREPNNLGSIIRTCGALPCSQVVVTHGCCDPWESKALRGGCGGQF 287 Query: 186 HIPYIRISNLT-----------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 +P D + Q ++ + + + LI+G Sbjct: 288 RVPIRDDVTWEELALTIPPEAADDCHVFIAESNQRKRENNQTIDYADIQSLGAHNLLIIG 347 Query: 235 AEGKGLRPKTQETATS------MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ + ++ + I +LNV++A + L+ + Sbjct: 348 GESHGVSEEAYRFLNMVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRRKL 399 >gi|238810259|dbj|BAH70049.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 244 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 103/235 (43%), Gaps = 9/235 (3%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 E L++ G ++V AL I + +L ++ Sbjct: 15 EKLYVCGRNSVEDALKVN-LPIETIYVNS---FQLAQKLKQITKAKIEMKDNSFFANY-- 68 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + HQG+ L+ ++ ++VLDH+ DPHN+GAI+R+A +I Sbjct: 69 RNDNHQGVIAILRDFPIYDLETIKKDNPENVLVLDHIQDPHNLGAIIRTANTCGIKHLII 128 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223 +K S + ++ + K +SG ++ I++++++ L K+ W + + ++ + + Q Sbjct: 129 SKERSANITSTVLKVSSGGFVNMKIIKVNSISATLTKLKKWNYWIYVSALDETAQKVNQV 188 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 N L++G EG G+ T A + ++ G ++++NVS A + LY Sbjct: 189 TFNKPSVLVVGNEGDGVSKSTLNEADQVIYIPQKGSVQSMNVSVATGILLYELTK 243 >gi|329898069|ref|ZP_08272279.1| von Willebrand factor, type A [gamma proteobacterium IMCC3088] gi|328920968|gb|EGG28392.1| von Willebrand factor, type A [gamma proteobacterium IMCC3088] Length = 256 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 9/237 (3%) Query: 51 LYGVHTVSAALNNP--SRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVG 106 +YG + V A L + K+ L + +LD L V+ + +I Sbjct: 20 VYGRNPVEACLQDAQLRPKVLHLADSNQKSDKLDRLIALAEKRGCDVRFHDRDALARISK 79 Query: 107 KEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + QG+AL+ L + L++LD V +P N+G ILRS A G Sbjct: 80 NKKQDQGVALDVECQAFNDLSVFLQSTSEETCRLILLDRVTNPQNLGMILRSTTAAGITG 139 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +R ++AK+++G L H P +R ++ ++AL + GF LSS ++ Sbjct: 140 VIVPERGCAPLGPLVAKASAGTLFHAPVLRCTSSSEALDALLGLGFTCYTLSSHTESNFF 199 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +E K +LG E +G+ P + + M +++LNV+ AA+ Y Sbjct: 200 EEHIPAKAVFVLGNESEGVAPDIASRCQAKVRIPMHNGVESLNVAITAALIAYYLDR 256 >gi|319956873|ref|YP_004168136.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM 16511] gi|319419277|gb|ADV46387.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM 16511] Length = 270 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 59/262 (22%), Positives = 110/262 (41%), Gaps = 10/262 (3%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 K ++ + S+ +K + L +YG + V AL +PS +I +L +++ Sbjct: 3 EKNSTHNAQRTTLVSYEEKKSFYEK--VLTIYGRNPVLEALEDPSLQIHRLHLSESNKPS 60 Query: 81 LDWD----ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQ 133 D ++T + + +I QG+AL+ T D Sbjct: 61 KQLDRMVALAKKRGIEIRTHEKKALSRISKNSRQDQGVALDVVLENLTTPDAFLNEHKRF 120 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-LAKSASGALEHIPYIRI 192 L+ LD V +P N+G I+RS A DGI+ + + + + K+++G L IP IR Sbjct: 121 RLIALDRVTNPQNVGMIIRSCAAGRIDGIVMSAKGNAPLVSPLTIKASAGTLFKIPIIRA 180 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +L L+ G + L S + + + ILG E +G+ P+ + Sbjct: 181 DSLLGTLRLFREAGAKLYTLDSHASTDYRKLDPTSREVFILGNESEGVSPEIAALSDERI 240 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M +++LNV+ A++ + Sbjct: 241 AIPMNRGVESLNVAVTASLLAF 262 >gi|195173298|ref|XP_002027429.1| GL20885 [Drosophila persimilis] gi|194113281|gb|EDW35324.1| GL20885 [Drosophila persimilis] Length = 405 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 38/294 (12%), Positives = 94/294 (31%), Gaps = 28/294 (9%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + + +L + + + + + + + G + AL + + + K+ Sbjct: 111 NLEFVRLTLQDPLTSTLLTTVRSRKRRDKNRQIIIEGRRLIKEALQCGLKMSTLIFSQKD 170 Query: 77 ALARLDWDANLPHP---FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 LA L + + VP + LA+ P + + Sbjct: 171 QLALLKEEVAQAQQETHTKIYKVPQHDLKTWSSLVTPPGLLAVFDRPSEKGLEKNLAEQE 230 Query: 134 LL--------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L +V D++ +P+N+G+I+R+ A C ++ T+ + + G Sbjct: 231 RLGSQPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVITRGCCDPWESKALRGGCGGQF 290 Query: 186 HIPYIRISNLT-----------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 +P + D + + + + + LI+G Sbjct: 291 RVPIRDDVSWEELSMTIPADAADDCHVFIAESNKEKLANRRAIDYADIAQIGTHNLLIIG 350 Query: 235 AEGKGLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 E G+ + ++ + I +LNV++A + L+ + ++ Sbjct: 351 GESHGVSEEAYSFMNLVGGKGKCVYIPLAAGIDSLNVASALTLLLFELRRKLSQ 404 >gi|126662427|ref|ZP_01733426.1| putative tRNA/rRNA methyltransferase [Flavobacteria bacterium BAL38] gi|126625806|gb|EAZ96495.1| putative tRNA/rRNA methyltransferase [Flavobacteria bacterium BAL38] Length = 241 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 98/254 (38%), Gaps = 21/254 (8%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S QK ++ Q + F GV V LN+ + L TK + + Sbjct: 6 QIKLITSLQQK-KYRKQEQLFFAEGVKVVQELLNSNFE-LQDLFTTKEDFPSVYKN---- 59 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V V + KI + LA+ P +++ L++ LD V DP N+G Sbjct: 60 ---KVHAVSDLELKKISALTTPNTCLAVFKMPKAKNFVESG----LILALDDVRDPGNLG 112 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R F + + ++ + + ++ G++ + + S + + Sbjct: 113 TIIRLCDWFGIETLFCSEESVDIYNPKVVQATMGSISRVNVVYGSL-----EAFLTKTKL 167 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII---KALNV 265 I + + QE + +++G E G+ P ++ + + G I ++LNV Sbjct: 168 PIFGTFMDGSNIYQEALPKEGVIVMGNEANGISPSVEKLVSERIAIPRFGNIQLTESLNV 227 Query: 266 SNAAAVALYITQNH 279 + A A+ L + + Sbjct: 228 ATATAIILSEFKRN 241 >gi|261368263|ref|ZP_05981146.1| SpoU rRNA methylase family protein [Subdoligranulum variabile DSM 15176] gi|282569778|gb|EFB75313.1| SpoU rRNA methylase family protein [Subdoligranulum variabile DSM 15176] Length = 257 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 110/256 (42%), Gaps = 10/256 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R + K S + + F G + AT+ ALA+ Sbjct: 8 SRENPKIKYACSVRDSEKQRAADGLFFAEGPKLCLELAKSC--TPRTAYATEAALAKTPA 65 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 A+L +P P V P +K+ G ++ L P P L + +++ ++ L+ V D Sbjct: 66 LASL-NPMP---VAPHVAEKLAGTKSSQGVFVLFETPQTDPAL--LDSARRILALEGVQD 119 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LRSA AF D ++ + S +S+ GA +P + NL L ++ Sbjct: 120 PGNVGTLLRSAAAFGFDAVVLGPGCAAPFSPKTLRSSMGAAGRLPVVHTENLPGTLHRLR 179 Query: 204 SWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 G + + +PL++E + +++G+EG+GL +T + + + M ++ Sbjct: 180 ERGVTCLAAALYHSRPLDEEGRDFPAGVCVVIGSEGQGLTDETVQACDAAVRIPMTDRVE 239 Query: 262 ALNVSNAAAVALYITQ 277 +LN A +V L+ + Sbjct: 240 SLNAGVAGSVLLWHFR 255 >gi|325282012|ref|YP_004254554.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM 20712] gi|324313821|gb|ADY34374.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM 20712] Length = 253 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 90/256 (35%), Gaps = 11/256 (4%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + K+ +K + + + G V L++P KI L+A + L+ + Sbjct: 4 KQVTKIVQNLEKKKFREKYNLFKIEGEKLVGELLHSP-LKIHSLIAFPSW---LEQNKKA 59 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + + + I +++ + +AL P+ + V L +VL+ + DP N+ Sbjct: 60 LSNVNIIEADEREMHGISNFQSLPEVIALAEIPVHIYRKEEV-LDSLSLVLNGIQDPGNL 118 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ILR A F I + + +++ GA+ + + Sbjct: 119 GTILRVADWFGIGNIFCDADCAGVYNPKCVQASMGAIFRVKTFYTDLPVLLSELKQEGLP 178 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKAL 263 K + + + +++G EGKG+ + + + ++L Sbjct: 179 VFGTFLD--GKNIYTTALSTRGLIVMGNEGKGISAEIEALTGQKLTIPSFARNSESTESL 236 Query: 264 NVSNAAAVALYITQNH 279 NV A + L + Sbjct: 237 NVGVATGIILSEFKRR 252 >gi|296270633|ref|YP_003653265.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833] gi|296093420|gb|ADG89372.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM 43833] Length = 275 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 61/266 (22%), Positives = 107/266 (40%), Gaps = 17/266 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY +++ + ++ G + A+ R + +L T L RL Sbjct: 14 ADYVRLRDSELRKSLEAERGLFIAEGEKVIRRAVATGHR-LRSVLTTAKWLDRLADVI-- 70 Query: 88 PHPFPVKTVPPQTIDKIVGKE-------AVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 P V + + I G + AV + A LL+ +++L+ Sbjct: 71 -GDVPTYLVSDEVMRGIAGFQVHRGALAAVERPELPSVAGLLTGPGSGEGPPGRILILED 129 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + D N+GAI R A A D II + R + K + GA+ IPY R+ + L Sbjct: 130 LVDHGNVGAIFRCAAALGVDAIILSPRCADPLYRRAVKVSMGAVFAIPYARMDDWYHGLG 189 Query: 201 KMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG- 258 ++ + GF+ + L+ D + +++AL+LG+EG GL + + A + M Sbjct: 190 EVRAAGFRLLALTPDQSAVPLHEAELGERVALLLGSEGDGLSARWLDLADERVCIPMSPA 249 Query: 259 ----IIKALNVSNAAAVALYITQNHF 280 + +LNV AAA+A + Sbjct: 250 AMARGVDSLNVVAAAAIACHGLMRGR 275 >gi|218661645|ref|ZP_03517575.1| tRNA/rRNA methyltransferase protein [Rhizobium etli IE4771] Length = 254 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 128/216 (59%), Positives = 162/216 (75%), Gaps = 1/216 (0%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 YG+HTV AAL+NP RK +L T+NALARL+ D + V P IDK++G EA+H Sbjct: 25 YGLHTVRAALDNPERKKIKLSVTQNALARLEIDVETL-GIAFEIVSPHEIDKVLGPEAIH 83 Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 QG+ LET PL L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ Sbjct: 84 QGVMLETRPLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPT 143 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 ES VLAKSASGALE IPYI+I+NL DAL ++H GF TIGL S+ PLE DK+AL Sbjct: 144 ESGVLAKSASGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKVAL 203 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +LG+EGKGLR KT+ET T++A L MPG IK+LNVSN Sbjct: 204 VLGSEGKGLRQKTRETVTALARLDMPGAIKSLNVSN 239 >gi|332827938|gb|EGK00660.1| hypothetical protein HMPREF9455_02934 [Dysgonomonas gadei ATCC BAA-286] Length = 252 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 96/256 (37%), Gaps = 17/256 (6%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K ++S +K + S+ G VS L P K L+A L+ L+ Sbjct: 9 KYIRSLKEK-KFRSEYGTFIAEGNKLVSDLL--PYMKCQLLVALPGFLSELNITDIE--- 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 V V + + + Q LA N+QL++ LD + DP N+G I Sbjct: 63 -EVIEVNESQLAQASFLQNPQQVLA--VFYQPKHPEAIDINNQLVLALDGIQDPGNLGTI 119 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + I T + + + ++ GAL + + + + + Sbjct: 120 VRLADWYGIKHIFCTHDTADIYNPKVVQATMGALARVTIHHVDLA----GFLDNNKHIPV 175 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALNVS 266 + K + ++ +++G EG G+RP+ ++ T ++ ++LNV+ Sbjct: 176 YGTLLDGKNMYEQDITPHGIIVMGNEGNGIRPEIEKRITKKLYIPNYPEGNTTSESLNVA 235 Query: 267 NAAAVALYITQNHFAK 282 A A+ + K Sbjct: 236 IATAIVCAEFRRRSNK 251 >gi|255327493|ref|ZP_05368560.1| RNA methyltransferase, TrmH family [Rothia mucilaginosa ATCC 25296] gi|255295387|gb|EET74737.1| RNA methyltransferase, TrmH family [Rothia mucilaginosa ATCC 25296] Length = 292 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 4/253 (1%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 R Y ++ +S Q + AL + + L ++ L Sbjct: 38 RYYTQLTDVKLRSAMEPQWGIYIAESSKVIRRALAAGHQPV-SFLMSEKWADDLADVLRA 96 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P + ++++ G LA P P ++ + + +L+ + D N+ Sbjct: 97 HPDTPAYVGSEEQLEQVTGFHLHRGALAAMARPAPQPLEQLLQGASRVAILEDIVDHTNV 156 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RSA A + D ++ T R + + + G + +P+ R+ + LQ +H GF Sbjct: 157 GAIFRSAAALNVDAVLVTPRCADPLYRRSIRVSMGTVFQVPWARLESWPADLQTLHELGF 216 Query: 208 QTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ L+ + +++K+ALILG EG GL P+T + M + +LN Sbjct: 217 KSAALALEEDSLTLEELSARRDEKLALILGTEGHGLSPRTLAACDDTVMIPMSHGVDSLN 276 Query: 265 VSNAAAVALYITQ 277 V+ A+AVA + T+ Sbjct: 277 VAAASAVAFWETR 289 >gi|305664506|ref|YP_003860793.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170] gi|88708523|gb|EAR00759.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170] Length = 240 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 39/252 (15%), Positives = 89/252 (35%), Gaps = 20/252 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S QK ++ +Q + G+ +V LN+ + + Sbjct: 6 QIKFIKSLQQK-KYRNQHRMFAVEGIKSVKELLNSNIEAHKVYCVNPSLIENESGL---- 60 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V+ + KI + + L + P + L+ LD V DP N+G Sbjct: 61 ----VELISAGDFKKISTLKNPNGVLGVFIIPKPKVV----DQNDWLLALDDVRDPGNLG 112 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R F ++ ++ + + +++ G++ + + Sbjct: 113 TIIRLCDWFGIKNLLCSENTVDCFNPKVLQASMGSITRVNVVYTDL-----VTFLEQTKL 167 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI--IKALNVS 266 + + + + + K L++G EG G+ + S + G ++LNV+ Sbjct: 168 PVYGTFMNAASVYNKALPKKGILVMGNEGNGISSDIENLVNSKISIPQFGDKATESLNVA 227 Query: 267 NAAAVALYITQN 278 +A ++ L + Sbjct: 228 SATSIFLSEIRR 239 >gi|222110441|ref|YP_002552705.1| tRNA/rRNA methyltransferase SpoU [Acidovorax ebreus TPSY] gi|221729885|gb|ACM32705.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax ebreus TPSY] Length = 260 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 92/254 (36%), Gaps = 10/254 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ K+++ +Q S + ++L G H SAAL + + + L Sbjct: 10 SRDNALLKELRRLSQDSSAYRKQGRVWLEGDHLCSAALARGQKPAIAVFSESFWPQALAE 69 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 A V + + + + LD +VLD + D Sbjct: 70 YARAATK---NVVIADVLWSDISALESPAPMGFVLPLPEAEGLD---GRMPTVVLDRLQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G+ILRSA AF + K + S + ++ GA A + Sbjct: 124 AGNVGSILRSASAFGFTQVAALKGTAALWSGKVLRAGMGAHF----ALRLVEGLAPADID 179 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + SS L + I+G EG+G+ P Q+ A + PG ++L Sbjct: 180 RLEVPLLATSSHEGDFLHRAALPWPCGWIMGHEGQGVSPALQQRARRHIRIAQPGGEESL 239 Query: 264 NVSNAAAVALYITQ 277 NV AAA+ L+ + Sbjct: 240 NVGAAAAICLHASA 253 >gi|88856163|ref|ZP_01130823.1| rRNA methyltransferase [marine actinobacterium PHSC20C1] gi|88814482|gb|EAR24344.1| rRNA methyltransferase [marine actinobacterium PHSC20C1] Length = 267 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 105/254 (41%), Gaps = 9/254 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQLLATKNALARLDWDAN 86 D+ + + R + ++ AL R + L + +A L D Sbjct: 16 DFANLTDVALRRRTEPEGGLYIAESSKVIARALRAGHVPRAVLVLEQWLDDVAELLGD-- 73 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 PV + ++++ G LA P L + +++++ +++L+ + D N Sbjct: 74 --SDAPVYVGESELLEQLTGFNLHRGALASMHRPALRSVSELIKDARRIVILEDIVDHTN 131 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GA+ RSA A D ++ T R + + + G + +P+ RI N + + G Sbjct: 132 VGAVFRSAAALGADAVLITPRCADPLYRRSVRVSMGTVLQVPWTRILNWPADAALLKAAG 191 Query: 207 FQTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F +++ALILG EG GL +T E A S+ + M + +L Sbjct: 192 FHLAALALNDDSIDLDTFAANAPERVALILGTEGDGLSRQTIEAADSVVKIPMMHGVDSL 251 Query: 264 NVSNAAAVALYITQ 277 NV+ A+AV +Y + Sbjct: 252 NVAAASAVGMYTLR 265 >gi|291549718|emb|CBL25980.1| rRNA methylases [Ruminococcus torques L2-14] Length = 285 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 89/268 (33%), Gaps = 19/268 (7%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y + ++ + + AL+ I L+ K + L Sbjct: 18 YARYTEAQLLNKDRPEDGLFIAESPKVIGRALDAGYIPISVLVEKKQMEENEETQEVLAR 77 Query: 90 ----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + T + ++ G + L L + +L+ V +P Sbjct: 78 FENTGTSIFTAEFAVLTQLTGFKLTRGMLCALKRRPLEDFRKLCEGKNRIAILEDVMNPT 137 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI RSA A D ++ T S ++ + G + IP+ I + + Sbjct: 138 NVGAIFRSAAAMHIDTVLLTSGCSNPLYRRASRVSMGTVFQIPWTFIQDDKERRCDRKDI 197 Query: 206 GFQTIGLS---------------SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + Q + +K+A+ILG EG GL +T + Sbjct: 198 WPVQAIENLKALGYKTAALALTDDSVSIDDPQLMSEEKLAVILGTEGDGLMQETIKACDY 257 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278 + M + +LNV+ A+AVA + + Sbjct: 258 TVKIPMSHGVDSLNVAAASAVAFWQLRK 285 >gi|171780263|ref|ZP_02921167.1| hypothetical protein STRINF_02051 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281611|gb|EDT47046.1| hypothetical protein STRINF_02051 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 218 Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 10/224 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 + G H A + + + + R++ ++ V V P+ + ++ Sbjct: 2 IEGWHLFEEAQKADAEFLN-IFVLEEFSDRVEGLSH------VTYVTPEVLKELTD-SKT 53 Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 QG+ E P D + L++ + V DP N+G ++R+A A DG++ +++ + Sbjct: 54 PQGIIAEVVMPSLPLADLKADRYLVL--EDVQDPGNVGTMIRTADAAGLDGVLISEKTAD 111 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + +S G+ H+P + + S + + A Sbjct: 112 IYNQKTLRSMQGSHFHLPVWCTNVYEACQKLQSLGVPLVATTLSKDSVDYKTVEHKGEFA 171 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L++G EG G+ + + A +AH+ MPG ++LNV+ A + L+ Sbjct: 172 LVMGNEGNGISEQMTKQADILAHIIMPGQAESLNVAVATGIVLF 215 >gi|270291198|ref|ZP_06197421.1| RNA methyltransferase, TrmH family, group 3 [Pediococcus acidilactici 7_4] gi|304385483|ref|ZP_07367828.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284] gi|270280594|gb|EFA26429.1| RNA methyltransferase, TrmH family, group 3 [Pediococcus acidilactici 7_4] gi|304328690|gb|EFL95911.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284] Length = 251 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 115/242 (47%), Gaps = 11/242 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 + ++ + F+ G H A+L + K+F K+ ++ V Sbjct: 3 NENKQQPDFVIGRHPAMASLKSGHSINKVFIQEGLKSESIGQIIAKAKKQGLVIQRVSKS 62 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152 +D + + HQG+ L A +L+ + +++LD + DPHN+G+ILR Sbjct: 63 KLDTLANGQ-NHQGVVLAVASFEYASLEQVFELAESRNEAPFVVILDGIEDPHNLGSILR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A G+I KR + ++ +AK+++GA+E +P ++++NL + L+++ G G Sbjct: 122 TADAAGVHGVIIPKRRAVGLTSTVAKTSAGAIERVPVVQVNNLVNTLKELKDRGLWIFGT 181 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + LI+G EGKG+ T+E M + M G I++LN S AA + Sbjct: 182 DMAGTDYRRWD-ATGPVGLIIGNEGKGMARLTKENVDEMLTIPMVGDIQSLNASVAAGLL 240 Query: 273 LY 274 +Y Sbjct: 241 IY 242 >gi|296313879|ref|ZP_06863820.1| RNA methyltransferase, TrmH family, group 3 [Neisseria polysaccharea ATCC 43768] gi|296839525|gb|EFH23463.1| RNA methyltransferase, TrmH family, group 3 [Neisseria polysaccharea ATCC 43768] Length = 194 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 83/162 (51%) Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L L+ + LL++LD + DPHN+GA LR+A A +I K S +A ++K Sbjct: 26 HVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSK 85 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 A GA E +PYI ++NL L+++ +G IG L D A ++G EG Sbjct: 86 VACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYHCDLPDSAAWVMGNEGD 145 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G+R T+E + + M G ++++NVS +A + L T+ Sbjct: 146 GMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 187 >gi|195020532|ref|XP_001985214.1| GH16936 [Drosophila grimshawi] gi|193898696|gb|EDV97562.1| GH16936 [Drosophila grimshawi] Length = 410 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 91/291 (31%), Gaps = 27/291 (9%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + + +L + + + + + + + + G + AL R + K+ Sbjct: 115 NLEFTRLTLQDPLMSTLLTEVRSRKRRDKNKQIIIEGRRLIEEALECGLRMHALFFSQKD 174 Query: 77 ALARLDW---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--- 130 L L A H + VP + LAL P L + Sbjct: 175 QLGLLREPVAQAQQEHNTMIYKVPQHDLKTWSALVTPPGLLALFERPSARGLLQQQQLGS 234 Query: 131 -NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + +V D++ +P+N+G+I+R+ A C ++ T + + G +P Sbjct: 235 EPLPITVVCDNIREPNNLGSIIRTCAALPCTQVVVTHGCCDPWESKALRGGCGGQFRLPI 294 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--------------ALILGA 235 + + + P ++ + + LI+G Sbjct: 295 RDDVTWEQLALHIPPEAAEDCHVFIAENNPEKRTSQEGRTTVDYAELGKVGAHNILIIGG 354 Query: 236 EGKGLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ ++ + I +LNV++A + L+ + Sbjct: 355 ESHGVSEDAYRFMHLVGSRGKCVYIPLAMGIDSLNVASALTLILFELRRKL 405 >gi|22537746|ref|NP_688597.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R] gi|76788278|ref|YP_330224.1| RNA methyltransferase [Streptococcus agalactiae A909] gi|76799024|ref|ZP_00781219.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 18RS21] gi|22534636|gb|AAN00470.1|AE014264_25 RNA methyltransferase, TrmH family [Streptococcus agalactiae 2603V/R] gi|76563335|gb|ABA45919.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909] gi|76585610|gb|EAO62173.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 18RS21] gi|319745519|gb|EFV97821.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC 13813] Length = 247 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 10/230 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + + G H A ++ + + T+ A+ RL P V + ++ Sbjct: 25 RKSSYLIEGWHLFEEAEKYGAQFLN-IFVTETAIDRLR------KPERAIVVTDDVLKEL 77 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + QG+ E A + D + L++ + V DP N+G ++R+A A + D + Sbjct: 78 TDSQ-TPQGIVAEIAFQETRWTDIKKGRFLVL--EDVQDPGNLGTMVRTADAANFDAVFL 134 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 +++ + + +S G+ H+P R+ S+ + Sbjct: 135 SQKSADLYNQKTLRSMQGSHFHLPVFRVEIEQFVNFCKAEGITMIATTLSEQSVNYKNLP 194 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K D ALI+G EG+G+ E A +AH+ MPG ++LNV+ AA V ++ Sbjct: 195 KYDYFALIMGNEGQGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIF 244 >gi|269957727|ref|YP_003327516.1| RNA methyltransferase, TrmH family, group 3 [Xylanimonas cellulosilytica DSM 15894] gi|269306408|gb|ACZ31958.1| RNA methyltransferase, TrmH family, group 3 [Xylanimonas cellulosilytica DSM 15894] Length = 327 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 71/289 (24%), Positives = 121/289 (41%), Gaps = 30/289 (10%) Query: 20 YAKLRRNHRDYKKMQSFNQKSR---------------HTSQPENLFLYGVHTVSAALNNP 64 A+ R H +KK Q +++ S + G ++V AL Sbjct: 40 KAEDREYHPAFKKKQEAEKRAAGQRQRGAARGVVRGTRRSTDGVEVIAGRNSVLEALRTD 99 Query: 65 SRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 I + + R + V +D++ + VHQG+A + P Sbjct: 100 -VPITTVYVATRLDHDDRTREILQHAASAGLALLEVTKPELDRLTDGQ-VHQGVAAQVPP 157 Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 +D L++ LD V DP N+GAILRSA AF G++ +R S + Sbjct: 158 YEYRDVDDLLDAAEASGRPPLIVALDGVTDPRNLGAILRSAGAFGAHGVLVPERRSAGVT 217 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232 A K ++GA H+P R +NL AL ++ G +GL D + + + D + ++ Sbjct: 218 ASAWKVSAGAAAHVPVARATNLARALGELKKAGCFVVGLDGDGDQLVGELSLATDPLVVV 277 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHF 280 +G+EGKG+ +ET +A + + +++LN A ++ALY Sbjct: 278 VGSEGKGMGRLVRETCDVIASIPIDSTAVESLNAGVATSIALYEIAQSR 326 >gi|195646036|gb|ACG42486.1| spoU rRNA Methylase family protein [Zea mays] Length = 345 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 52/273 (19%), Positives = 97/273 (35%), Gaps = 26/273 (9%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K + + L L G+ + + I LL +A Sbjct: 66 NPLVKHCVKLRLSAAYRRSCRRLLLVGLAPILEVCSFELEAIDYLLLLDGV---EAPEAL 122 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------------VRNSQL 134 + V + K+ G ++V A+ + + D + Sbjct: 123 REFSGDILYVSAAVMKKVSGMQSVDSTEAVAVMHMPNLFRDLGSHQDGDALDGLFSYPKR 182 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++VLD + DP N+G ++RSA AF DG+ + ++A GA +P + + Sbjct: 183 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGTW 242 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEI----------KNDKIALILGAEGKGLRPKT 244 G S ++ N+ + L+LG+EG GL +T Sbjct: 243 HDLHALVTKYRMKMMAGHPESSSDASKETYSLSNELADSLLNESLCLVLGSEGNGLSAET 302 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + ++ M G ++LNVS A + L++ Q Sbjct: 303 LQAC-ELVNIPMEGTFESLNVSVAGGIFLFMLQ 334 >gi|225351944|ref|ZP_03742967.1| hypothetical protein BIFPSEUDO_03548 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157191|gb|EEG70530.1| hypothetical protein BIFPSEUDO_03548 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 288 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 91/267 (34%), Gaps = 22/267 (8%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y + +++ + AL I L+ + A + Sbjct: 17 YTNLTEIQLRNKLEPSKGLFIAESPKVIDRALTADREPISLLVEEPWIGGMSETFARIDQ 76 Query: 90 ----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV P+ + ++ G LA L + R ++ + V++++ D Sbjct: 77 RWGTDIPVYVASPEQLKQLTGYRLHRGALAAMKRWPLPSVEEVCRGARRIAVMENIVDHT 136 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA++RSA A + D ++ T A+ + G + IP+ RI Sbjct: 137 NVGALMRSAAALNVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHYWPFTGM 196 Query: 206 GFQTIGLSSDSKK------------------PLEQEIKNDKIALILGAEGKGLRPKTQET 247 + ++ DK+ALI G EG GL T Sbjct: 197 QELRDLGFTTVAMALEDDSISLEELVRRLNNDNGEKDHIDKLALIFGTEGDGLSHHTISR 256 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M + +LNV+ ++AVA Y Sbjct: 257 ADLTVKIPMSHGVDSLNVAASSAVAFY 283 >gi|116670041|ref|YP_830974.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] gi|116610150|gb|ABK02874.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] Length = 298 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 87/276 (31%), Gaps = 27/276 (9%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-NNPSR-------KIFQLLATKNALAR 80 + + + + G V AL + R + ++ A++ L R Sbjct: 19 RVRDVAKLAGRP-ARLKRGQFLAEGPQAVREALVLHQKRMAAGEPGVVHEVFASEACLDR 77 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 L + + + + +A+ ++ +L+ VL Sbjct: 78 YPEFEKLAEGVNARLATDEVLAAMADTVNPQGIIAVCAFVDVALEAVLDAGPRLIAVLCQ 137 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N G +LR+A A D ++ T + +S +G+L H+P + +L+D Sbjct: 138 VRDPGNAGTVLRAADAAGADAVVLTASSVDIYNPKAVRSTAGSLFHLPVVLGVDLSDLAT 197 Query: 201 KMHSW------------------GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + + A + G E +GL Sbjct: 198 ACRERGIGVLAADGYGQLDLDQLQDENAARRLGNPGAESAYDLGRPTAWLFGNEAQGLSD 257 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + + G ++LNV AA V LY + Sbjct: 258 AELALADHRVAVPVYGAAESLNVGTAATVCLYASAR 293 >gi|295091750|emb|CBK77857.1| rRNA methylases [Clostridium cf. saccharolyticum K10] Length = 274 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 90/245 (36%), Gaps = 8/245 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + +P + AL+ I L+ TK+ + PV T + Sbjct: 30 YEPEPGIFIAESPKVIERALDAGYEPISLLMETKHVEGQGREVIARCGHIPVYTAQFDVL 89 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++ G + L + ++ ++VL++V +P N+GAI RSA A D Sbjct: 90 TRLTGFQLTRGVLCAMRRKRMPEACSICAGARRIVVLENVMNPTNVGAIFRSAAALGMDA 149 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK--------MHSWGFQTIGLS 213 ++ T S + + G + IP+ + M Sbjct: 150 VLLTPGCSDPLYRRAVRVSMGTVFQIPWTFFDGKKVKWPENGQELLREMGFKTAAMALSD 209 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + +K+A+I+G EG+GL +T + + + M + +LNV+ A+AVA Sbjct: 210 DSVSIDEPALRREEKLAVIMGTEGEGLCAQTIRESDYVVRIPMSHGVDSLNVAAASAVAF 269 Query: 274 YITQN 278 + Sbjct: 270 WQLGR 274 >gi|227501820|ref|ZP_03931869.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC 49725] gi|227077845|gb|EEI15808.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC 49725] Length = 268 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 102/254 (40%), Gaps = 7/254 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + ++ + + + G + V AA++ + + T+ A R Sbjct: 14 PRIVNAAKLH-RAASRMKAKQFIIEGENAVDAAVSTGAATD--VFVTEKAAERFADIVTA 70 Query: 88 PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDP 144 V + + + AL ++ +L +L+ V ++P Sbjct: 71 CGYMDVYVHPITDKAAKHLADTATTTGIFALCSSSVLWSAGKILNGKPKLISVPVLTSEP 130 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N G ++R++ A DG+I + +A++++G+L H+P R N+ D L ++ Sbjct: 131 GNAGTLIRTSDAMGADGVIFAGETVDPLGSKVARASAGSLFHVPVARDPNIKDVLGQLRK 190 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G Q + ++D + L + A + G E GL + E A + + G ++LN Sbjct: 191 SGMQIVATAADGEVELADADLSQPTAWLFGNEAHGLG-ELLEEADMRVRIPLRGRAESLN 249 Query: 265 VSNAAAVALYITQN 278 ++ AA++ LY + Sbjct: 250 LATAASICLYESAK 263 >gi|291087701|ref|ZP_06572067.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1] gi|291074221|gb|EFE11585.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1] Length = 297 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 90/245 (36%), Gaps = 8/245 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + +P + AL+ I L+ TK+ + PV T + Sbjct: 53 YEPEPGIFIAESPKVIERALDAGYEPISLLMETKHVEGQGREVIARCGHIPVYTAQFDVL 112 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++ G + L + ++ ++VL++V +P N+GAI RSA A D Sbjct: 113 TRLTGFQLTRGVLCAMRRKRMPEACSICAGARRIVVLENVMNPTNVGAIFRSAAALGMDA 172 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK--------MHSWGFQTIGLS 213 ++ T S + + G + IP+ + M Sbjct: 173 VLLTPGCSDPLYRRAVRVSMGTVFQIPWTFFDGKKVKWPENGQELLREMGFKTAAMALSD 232 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + +K+A+I+G EG+GL +T + + + M + +LNV+ A+AVA Sbjct: 233 DSVSIDEPALRREEKLAVIMGTEGEGLCAQTIRESDYVVRIPMSHGVDSLNVAAASAVAF 292 Query: 274 YITQN 278 + Sbjct: 293 WQLGR 297 >gi|296111487|ref|YP_003621869.1| tRNA/rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154] gi|295833019|gb|ADG40900.1| tRNA/rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154] Length = 253 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 68/253 (26%), Positives = 120/253 (47%), Gaps = 13/253 (5%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKT 95 KS H + E F+YG + AL +++I ++ ++ + ++ Sbjct: 2 KSEHQAPNETGFIYGHYASVEALK-GTQEINKVWLQTGLQDKIRHSVTQLAKKKGLVIQQ 60 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIG 148 P +D++ HQG+ L A T+D + ++LD + DPHN+G Sbjct: 61 APKSKLDELTD-GGNHQGVVLSVASFNYATIDDLFENAKKHQAEPFFLILDGIEDPHNLG 119 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +ILR+A A GII KR + +A +AK ++GA+EH+P R++NL + + ++ G Sbjct: 120 SILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEHVPVTRVTNLVNTVSELKDRGLW 179 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + + ALI+G EGKG+ P ++ SM + M G +++LN S A Sbjct: 180 VFGTDMAGEDYRHWD-ATGATALIIGNEGKGISPLLKKKVDSMLTIPMIGHVQSLNASVA 238 Query: 269 AAVALYITQNHFA 281 A++ +Y + Sbjct: 239 ASLLIYQGFSSRN 251 >gi|84516419|ref|ZP_01003778.1| RNA methyltransferase, TrmH family, group 3 [Loktanella vestfoldensis SKA53] gi|84509455|gb|EAQ05913.1| RNA methyltransferase, TrmH family, group 3 [Loktanella vestfoldensis SKA53] Length = 258 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 85/239 (35%), Positives = 138/239 (57%), Gaps = 9/239 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++++ + E ++L+G+H V AL NP+R+ +L+ T+NAL RL DA + Sbjct: 10 KEQAKRVASQETVWLFGLHAVRDALENPAREKLRLIVTRNALERLG-DAVATGGIEPEIS 68 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAIL 151 P+ + ++VHQG ALE PL +L V +++LD V DPHN+GAIL Sbjct: 69 DPRKFAAPLDPQSVHQGAALEVKPLDWGSLQDVALREGPMPPRIVLLDRVTDPHNVGAIL 128 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F ++ +R++ E+ LAK+ASGALE PY+R+ NL D++ ++ G+ +G Sbjct: 129 RSAEVFGARAVVAMQRHAAPETGALAKTASGALERQPYLRVRNLADSIVELQQMGYLVLG 188 Query: 212 LSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L +++ +E+ ++ + AL++GAEG GLR KT+ET + + +LNVSN Sbjct: 189 LDGEAETTIEEAVEGKRDRAVALVMGAEGPGLRDKTRETCDILVRIDASADFGSLNVSN 247 >gi|169627980|ref|YP_001701629.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC 19977] gi|169239947|emb|CAM60975.1| Hypothetical tRNA/rRNA methyltransferase [Mycobacterium abscessus] Length = 270 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 105/253 (41%), Gaps = 6/253 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 ++ + S +++ S + GV V L + R + LL T L+ L D P Sbjct: 17 FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPL-ALLGTDRRLSELAADLE-PV 74 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P + + ++VG LA P P D ++ ++ + VL+ VND N+G+ Sbjct: 75 DVPYYRASAEVMAEVVGFHLNRGVLAASRRPEELPAADLLQTARTVAVLEGVNDHENLGS 134 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I R+A D ++ + + + G +P+ R+ +L ++ GF+ Sbjct: 135 IFRNAAGMGVDAVLFGSGCADPLYRRAVRVSMGHALLVPFARLPEWPKSLYRLRDSGFRL 194 Query: 210 IGLSSDSKKPLEQEIKN----DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + ++ + +K+AL++GAEG GL + + M +LNV Sbjct: 195 LAMTPAGDSKALADAIPPLRAEKVALMVGAEGPGLTDVALRASDLRVRIPMANGTDSLNV 254 Query: 266 SNAAAVALYITQN 278 + AAA+A Y Sbjct: 255 ATAAALAFYERAR 267 >gi|145354481|ref|XP_001421512.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581749|gb|ABO99805.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 318 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 56/258 (21%), Positives = 99/258 (38%), Gaps = 26/258 (10%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLAT-----------KNALARLDWDANLPHPFPVKTVP 97 +YG + V AL R +F L VK Sbjct: 62 EIVYGTNPVLEALRRNRRALFALYVQTGEGGAANGGKGAGAESEILRLAEARAVTVKRAS 121 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAIL 151 ++ + HQG+ L+ L PTL+ + + + LD + DP N+GA L Sbjct: 122 KHDLN-MACDNKPHQGVLLDAEALEIPTLEDLPKWDGRGEPPVWLALDEIVDPQNLGAAL 180 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA DG++ + S +A ++K+++GA+E + + L K G+ +G Sbjct: 181 RSAHFLGVDGVVCCAKNSAPFNATVSKASAGAMEAQVVHQTGVMHRFLAKARDEGWDVVG 240 Query: 212 LSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVS 266 ++D + + L++G EG GLR + + + + +LNVS Sbjct: 241 AAADARAEDVSDFSVRAPTILVMGNEGSGLRTNVRRACNRLIEIPRSASSAAGVDSLNVS 300 Query: 267 NAAAVALY---ITQNHFA 281 AA + ++ + A Sbjct: 301 VAAGILIHRLVAARRSRA 318 >gi|189485694|ref|YP_001956635.1| 23S rRNA methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287653|dbj|BAG14174.1| 23S rRNA methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 251 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 112/248 (45%), Gaps = 7/248 (2%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTV 96 S++ S+ + G + V L R + +++ ++ A + + +V Sbjct: 3 SKNNSRSSENVVCGRNPVLELLKAARRTVNKIMVSRTARGVVISEIINLAKQKGIALHSV 62 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTL---DAVRNSQLLMVLDHVNDPHNIGAILRS 153 PP+ +DK L LL++LD + DPHN+GAI+R+ Sbjct: 63 PPEKLDKFSESSQGIVAEVSPVQYTELSDLIERSKKSLKPLLVILDGLEDPHNLGAIIRN 122 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 VAF DG+I K + + ++KS++GA+EHI R+ N A+ + F +G Sbjct: 123 CVAFGADGVIIPKWRAAGVNETVSKSSAGAVEHISISRVENTNQAIGLLKENSFWIVGA- 181 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + LE+ +A+I+G+EG GL T++ + + + II +LN S A+AV L Sbjct: 182 ENGGRILEKIDLPFPLAVIIGSEGFGLHSLTKKNSDFLISIPQENIISSLNASCASAVIL 241 Query: 274 YITQNHFA 281 Y Sbjct: 242 YEIAKKRK 249 >gi|58697096|ref|ZP_00372541.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Drosophila simulans] gi|58536620|gb|EAL59943.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Drosophila simulans] Length = 236 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 125/226 (55%), Gaps = 9/226 (3%) Query: 58 SAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGL 114 +AL N +R+ +LLA +N + V+ V + ++ ++ K A HQG+ Sbjct: 1 MSALTNQNRRCIELLAPENFYREHKKEIRQCVDSKGIKVRLVESKILNDVLPKGANHQGI 60 Query: 115 ALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 AL AP+L ++ +S +++LD V D HNIG+ILR++ F+ D ++ +S Sbjct: 61 ALNVAPILYNLSIEEIAESSNDSSTIVILDQVTDTHNIGSILRTSACFNVDALVLPHNHS 120 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDK 228 PSE+A +AK+ASGAL+ +P I ++N+ +Q + G+ G ++K+ +++ K Sbjct: 121 PSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGFDCNTKENIDEIKSFEKK 180 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +I G+E KG+R +E + + M I +LNVSNAAA+ LY Sbjct: 181 RVIIFGSEEKGVRRLVKENCDYLLKIPMSNAINSLNVSNAAAIGLY 226 >gi|326385529|ref|ZP_08207168.1| RNA methyltransferase TrmH, group 3 [Novosphingobium nitrogenifigens DSM 19370] gi|326210068|gb|EGD60846.1| RNA methyltransferase TrmH, group 3 [Novosphingobium nitrogenifigens DSM 19370] Length = 304 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 89/222 (40%), Positives = 130/222 (58%), Gaps = 5/222 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPHPFPVKTVPPQTIDKIVGKE 108 L+G H V AAL NP+R +L T+ A+ D +A LP PV+ + ++V ++ Sbjct: 49 LWGRHAVEAALTNPARTAKKLWGTREAIQAMLDDHEAELPSSLPVEYAQAADLARLVARD 108 Query: 109 AVHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 A HQGL L+ +PL LD + L++LD V DPHN+GAILR+ AF +IT Sbjct: 109 APHQGLVLDCSPLEDIALDEVLDEAEGRTLVILDQVTDPHNVGAILRTCAAFDVAAMITQ 168 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 R++P ES LAK+ASGALE +P++R+ NL+ AL+ + G+ I L + K + Sbjct: 169 DRHAPPESGTLAKAASGALEVVPWVRVVNLSRALESIAEAGYWRIALDGEGKAEFPSALP 228 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +AL+LGAEG+GLR + S+A L + I++LNVSN Sbjct: 229 TGPVALVLGAEGEGLRHNVLQHCDSVARLPISRAIESLNVSN 270 >gi|222099913|ref|YP_002534481.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga neapolitana DSM 4359] gi|221572303|gb|ACM23115.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga neapolitana DSM 4359] Length = 216 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 89/195 (45%), Gaps = 5/195 (2%) Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPH 145 + + ++ G + HQG+ + +++ + + L+++LD + DPH Sbjct: 18 RGIRYSFESEENLRRLSGTKK-HQGVVFDIQEYRYSSVEEILESKTPPLIVILDQIQDPH 76 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI+R++V +GII K S + + K ++G + ++NL ++++ Sbjct: 77 NLGAIVRTSVGAGANGIIIPKDKSVKVTETVVKVSAGTVFRAKIAIVTNLARTIEELKER 136 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + S + P+ +E A + G EG+G+R +E + + M I +LNV Sbjct: 137 GVW-VYASDVNGTPIYEEDFTLPTAFVFGNEGEGIRRLVKEKCDRVLTIPMENDIDSLNV 195 Query: 266 SNAAAVALYITQNHF 280 S + + L+ Sbjct: 196 SVSVGIVLFEAVRQR 210 >gi|83319473|ref|YP_424103.1| RNA methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283359|gb|ABC01291.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 244 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 92/240 (38%), Gaps = 9/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG H + L + ++ L LD + V +D+++ Sbjct: 5 LIYGKHVIYELLKKHKNMVKEIWV--KNLKLLDEFDLKNTKIKINVVSENKLDQLLKTNE 62 Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 +HQG+ + D + L++VLD ++DP+N GAI+RS + DGII Sbjct: 63 LHQGIIAQIKDFNYTPFDELLNDLNTKEKSLVLVLDQIHDPYNFGAIIRSCSLLNVDGII 122 Query: 164 T-TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 K+ S VL S+ A + + ++ + + + + + Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFDIKISKTNNLNNAIKILKNNGFWIYATNLNQNSTDMTK 182 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +K +I+G E KG+ + + ++ I + N S A ++ + N+ K Sbjct: 183 TQFANKSVVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242 >gi|262037386|ref|ZP_06010850.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia goodfellowii F0264] gi|261748548|gb|EEY35923.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia goodfellowii F0264] Length = 244 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 57/230 (24%), Positives = 105/230 (45%), Gaps = 3/230 (1%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G++ V+ L + KI K + + + +T + G Sbjct: 16 IIGINPVTEVLKSDKNIEKIEVYKGIKKDTIKEILNLASKRNIKIFYTDRRT-ENSQGVV 74 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 A+ ++ ++++LD + DP N GAI+RSA F DGI+ R Sbjct: 75 ALVSEFDYYLELTEFFEKVLAKDKSIVVILDQIQDPRNFGAIIRSAECFGVDGIVIQDRN 134 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + + + KS++GA+EH+ I+++N++D + K +G++ G +D + +E K Sbjct: 135 NVKVTETVVKSSTGAIEHVDIIKVTNISDTIDKFKKYGYKVYGAEADGENLYYEESYPKK 194 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L+LG+EG G+R K +E +H+ G +LNVS A + L Sbjct: 195 VCLVLGSEGNGMRKKVREHCDKTLKIHLKGQTNSLNVSVAGGIILAEMSK 244 >gi|254495075|ref|ZP_05107999.1| SpoU rRNA methylase [Polaribacter sp. MED152] gi|85819425|gb|EAQ40582.1| SpoU rRNA methylase [Polaribacter sp. MED152] Length = 242 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 87/252 (34%), Gaps = 21/252 (8%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K + S +QK ++ + GV V L S K+ QL A D Sbjct: 9 KVITSLSQK-KYREKHGLFIAEGVKVVEELLQF-SLKVMQLFALDGYDLEGYEDV----- 61 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 V + + KI ++ ++ P +++ ++ LD +NDP N+G I Sbjct: 62 --VTRISEAELKKISKLKSPNKV----VGLFKIPDEQQLQHKGFILALDEINDPGNLGTI 115 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R F ++ +K + + +++ G+L + + Sbjct: 116 IRLCDWFGVQQLVCSKNTVDCYNQKVVQASMGSLTRVSIKYLDLEAYLNSTKTPIYIA-- 173 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSN 267 + ++ L++G E G+ + + + G ++LNV+ Sbjct: 174 ---DMQGSNVYSSQLPEEAILVMGNEANGISDAVRAIVQNKISIPRFGDTQETESLNVAT 230 Query: 268 AAAVALYITQNH 279 A A+ L + Sbjct: 231 ATAILLSEFKRR 242 >gi|284035913|ref|YP_003385843.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74] gi|283815206|gb|ADB37044.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74] Length = 248 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 90/243 (37%), Gaps = 10/243 (4%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +QS +QK ++ Q + G +V L + + +L+ + + Sbjct: 8 KYIQSLHQK-KYRQQHGAFLVEGAKSVQEVLQSDFQT--ELVVATEGFYKENAHLTDHQR 64 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV+ +++ E+ + LA+ P L L++ D + DP N+G I Sbjct: 65 TPVEIASVAELERAGTLESNNAALAVVRTKENRPLLAGPNEIALIL--DDIRDPGNLGTI 122 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR A + I+ ++ + + + ++ G+ + + Q + + Sbjct: 123 LRIADWYGVRKILCSETTADVYNPKVISASKGSFTRVNWWYGDITRVLAQATSAVYGAFL 182 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + L++G E G+RP+ T + G ++LNV A A Sbjct: 183 DGEDVHS-----LGFDASGYLVMGNESNGIRPEVGTFVTQRVTIPRYGDAESLNVGIATA 237 Query: 271 VAL 273 V L Sbjct: 238 VLL 240 >gi|62955359|ref|NP_001017695.1| RNA methyltransferase-like protein 1A [Danio rerio] gi|82178059|sp|Q566V3|RML1A_DANRE RecName: Full=RNA methyltransferase-like protein 1A gi|62202803|gb|AAH93318.1| RNA methyltransferase like 1 [Danio rerio] gi|182890496|gb|AAI64530.1| RNA methyltransferase like 1 [Danio rerio] Length = 435 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 51/322 (15%), Positives = 98/322 (30%), Gaps = 47/322 (14%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K+ L + K ++ S + + + L G + AL+ Sbjct: 99 ESSQINKLK-LAGLRFEKAPAGDNRLARVSSVARSRAFRDKEGKVLLEGRRLICDALSAG 157 Query: 65 SRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 + + L L D VK + +V + + + A L+ Sbjct: 158 ASPQMIFFSLLERLQELPLDKLQQAKLIKVKYEDIKLWSDLVTPQGLIAIFSKPDASRLT 217 Query: 124 PTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 DA ++ L ++ D+V D N+G ILR A A D ++ +K + + +SA G Sbjct: 218 FPKDARLQSVPLFLICDNVRDAGNLGTILRCAAAAGGDRVLLSKGCVDAWEPKVLRSAMG 277 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQT--------------------------------- 209 A +P + D + + Sbjct: 278 AHFRLPVFPNLDWDDISKHLPKNVIVHVADNYSTSTKQLVSGQTENVSSDDYSESDSDDD 337 Query: 210 -------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPG 258 L + + AL++G E GL + A + M Sbjct: 338 DDEEEDEDSLPHVKPQVYHECWAQRSAALVIGGETHGLSVEALRLAEETDGKRLFVPMAP 397 Query: 259 IIKALNVSNAAAVALYITQNHF 280 +++LN + AA + L+ + Sbjct: 398 GVESLNSAMAAGILLFEGRRQL 419 >gi|282890318|ref|ZP_06298846.1| hypothetical protein pah_c016o017 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499700|gb|EFB41991.1| hypothetical protein pah_c016o017 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 254 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 59/253 (23%), Positives = 112/253 (44%), Gaps = 13/253 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K + Q S + + +++ L G ++ + I +LL L + A Sbjct: 15 QNPLVKHLVKIRQNSDYRQEHQSVVLEGSTVIAEV--AKTHPIKRLLTVDLCLIPSEISA 72 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + V +DKI G + G+ E L +R+ L+VL+ +NDP Sbjct: 73 E-----EILQVDQAILDKISGMQHSP-GVLAEVKMPSPSPLKNIRS---LLVLNQINDPG 123 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ++RSA+AF +GI + + +SA GA +PY + L+++ + Sbjct: 124 NLGTLIRSALAFGWEGIFIVNQSCDIFNEKAIRSARGATFRLPYRKGDLQ--ELEEILTH 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 T ++ S P++ +K+AL+L E +G+ T + + M G +++LNV Sbjct: 182 NKLTTWVADVSGTPMQDITPPEKVALVLSNEARGVSSSTHPLFSQHVTIPMSGKMESLNV 241 Query: 266 SNAAAVALYITQN 278 + A A+ L+ + Sbjct: 242 AVAGAILLHYLKK 254 >gi|297559549|ref|YP_003678523.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843997|gb|ADH66017.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 272 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 61/257 (23%), Positives = 100/257 (38%), Gaps = 8/257 (3%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY +++ N + ++ G + A LL A D Sbjct: 15 ADYTRLRDVNLRRHLEAEHGLFMAEGDKVIRRAAAAGFEPRSFLLT--ERRAEALDDVVA 72 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P+ V T +K+VG + LA L P D + ++ ++VL+ + D N+ Sbjct: 73 ASSAPLYVVGEDTAEKLVGFDLHRGALAAFHRRALPPLDDVLAGARTIVVLEDLVDHTNV 132 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-----ALQKM 202 GAI RSA D I+ R + K + GA+ +P+ R+ + Sbjct: 133 GAIFRSAAGLGVDAIVLAPRCADPLYRRAVKVSMGAVFTLPHTRLDDWYGGLDTLRAAGF 192 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-IK 261 H S + + D++ L+LG EG GL + E AT+ H+ M + Sbjct: 193 HLMALTPGEGSLPLRDAMAALAPGDRVGLLLGTEGDGLSSRWLERATARVHIPMADRDVD 252 Query: 262 ALNVSNAAAVALYITQN 278 +LNV+ AAA+A Y Sbjct: 253 SLNVTAAAAIACYELTR 269 >gi|50954851|ref|YP_062139.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951333|gb|AAT89034.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 277 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 51/253 (20%), Positives = 101/253 (39%), Gaps = 4/253 (1%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY ++ + + ++ AL R +L + L ++ Sbjct: 15 ADYSRLTDVALRRVSEPEGGLYIAESTKVITRALAAGHRP-RSVLLQEQWLPDVEPLLAP 73 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 PV + ++ G LA P L +D +R ++ ++VL+ + D N+ Sbjct: 74 FPEAPVFVGEAAALQRLTGYHLHRGALAAMHRPALPAPVDLLREARRIVVLEDIVDHTNV 133 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RS D ++ + R + + + G + +P+ RI +A + GF Sbjct: 134 GAIFRSVAGLGADAVLVSPRCADPLYRRSVRVSMGTVLQVPWTRIPEWDEAAPLLRDAGF 193 Query: 208 QTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + +++A++LG+EG GL + A + + M + +LN Sbjct: 194 EIAALALADEAVALDEYAVAPPERVAMVLGSEGDGLSRRELAAADRVVAIPMLHGVDSLN 253 Query: 265 VSNAAAVALYITQ 277 V++A+AVAL+ + Sbjct: 254 VASASAVALWALR 266 >gi|291288813|ref|YP_003505629.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM 12809] gi|290885973|gb|ADD69673.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM 12809] Length = 225 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 9/231 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK-- 107 ++G +TV AL + L N+ + +T P+ + GK Sbjct: 2 IIHGRNTVEEALKLG--IVKLLFVKVNSTFDTS-----KYDVETRTYGPKEFEHYYGKEA 54 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + + + D + +++LD + DP N GAI+R+A F I+ Sbjct: 55 QGIAAEIRDMLPKKFDKAFDEIVEKGSVVLLDRIFDPMNYGAIIRAANCFGIKTILVGLD 114 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 ++ + K++SG + + + N AL+K+ G+ + K L+ + Sbjct: 115 RQAPITSAVCKASSGTIFYTDIVGAVNTATALKKLQENGYTAYAADVNGKVELKDVEFAE 174 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K +I+G+EGKG+RP +TA + M G I +LNVS +AAV LY N Sbjct: 175 KSIIIMGSEGKGIRPALLDTADVHIKIPMNGDIDSLNVSQSAAVILYEYAN 225 >gi|297802134|ref|XP_002868951.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297314787|gb|EFH45210.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Length = 355 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 28/278 (10%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-----NNPSR-KIFQLLATKNALAR 80 + K Q S + ++ + G + +I LL + A Sbjct: 74 NPFVKHCLKLRQSSSYRHAHGSVLVVGAIPIREVCMFQMNKQGITSEIECLLLHEEAQIP 133 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-----------PLLSPTLDAV 129 ++ V ++ + + + E+V + + Sbjct: 134 QGLESLSIRIVRVSSLVMKKLSGVQSTESVEAIALMRIPSSFIDLKDDKDIITDCNKWFP 193 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++ ++VLD + DP N+G ++RSA+AF DG + +++ GA +P Sbjct: 194 SSAHRVLVLDSIQDPGNLGTLIRSAMAFHWDGAFLLPGCCDPFNDKALRASRGASFQLPI 253 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK----------NDKIALILGAEGKG 239 + + + + G + S + + K + LILG+EG G Sbjct: 254 VSGNWNHLKVLEHEFQMKLLAGHPATSTQKPKLVSKLSVEFAQSVAEKPLCLILGSEGNG 313 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L ++++ + + M G ++LNVS A + L++ Q Sbjct: 314 LSEQSRKVC-ELVSIPMAGDFESLNVSVAGGIFLFMLQ 350 >gi|255036484|ref|YP_003087105.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM 18053] gi|254949240|gb|ACT93940.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM 18053] Length = 253 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 42/251 (16%), Positives = 90/251 (35%), Gaps = 6/251 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S K ++ + G +V L++ I +L T + Sbjct: 6 RIKYINSLKIK-KYRQLHGAFMVEGAKSVLELLDSDFE-IEFVLVTPEFQQKYSSILTR- 62 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 H V+TV Q ++ + + +L A + + +++LD V DP N+G Sbjct: 63 HNVSVETVTAQELEGLGSFQTN--DSSLAVAKTKENAFLSPAAKEYILMLDDVRDPGNLG 120 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A + I+ ++ + + + +A G+ + + + + Sbjct: 121 TIIRIADWYGITKIVCSRDTTDIYNPKVIAAAKGSFTRVNLYYTDLIQYFEEIKDTGRQV 180 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + + +I+G E G+ + ++ T+ + G ++LNV A Sbjct: 181 IGAFLGGDSLYEFEYPADGG-IIIMGNESNGISEQVEQFVTNKIMIPRFGAAESLNVGIA 239 Query: 269 AAVALYITQNH 279 AV L + Sbjct: 240 TAVMLDNMRRQ 250 >gi|288927754|ref|ZP_06421601.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317 str. F0108] gi|288330588|gb|EFC69172.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317 str. F0108] Length = 263 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 89/258 (34%), Gaps = 16/258 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 K +++ K +H G V L K+ A + + Sbjct: 6 AKIKYIRALETK-KHRDAEGVFVAEGPKVVGELLAKTPAKLLV------ATPQWRASNAV 58 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQG--LALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + TV + K+ +A Q + + S T V ++L ++LD + DP Sbjct: 59 QEGTELITVSNDELHKLSFMQAPQQVLAVFPKLYEGESTTAGNVETNELTLMLDGIQDPG 118 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R A F ++ + + + ++ G++ + T S+ Sbjct: 119 NLGTIIRLADWFGIRHVVCSTDTVDVYNPKVVQATMGSIARVKVSYTPLETLLDALPPSF 178 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIK 261 L D+ + +++G EGKGL ++ T + + Sbjct: 179 PVYGTLLDGDNIYTQQLCAYG---IIVMGNEGKGLSQGVRKRVTHRLLIPSFAIGEERAE 235 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV+NA A+ + Sbjct: 236 SLNVANATAIVCAEFRRQ 253 >gi|332187397|ref|ZP_08389135.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Sphingomonas sp. S17] gi|332012558|gb|EGI54625.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Sphingomonas sp. S17] Length = 247 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 91/221 (41%), Positives = 134/221 (60%), Gaps = 9/221 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 +G H V+AAL NP+R + ++ T+ ALA LD LP P+ + ++V +A H Sbjct: 19 WGRHAVTAALANPNRTVRKIWGTREALAALD----LPPVVPITYADAADLGRLVPADAPH 74 Query: 112 QGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 QGL E PL L + + + L+VLD V DPHN+GAILRSA AF GI+T Sbjct: 75 QGLVAEVDPLEDMWLGDLLHEGQDDQRPLVVLDQVTDPHNVGAILRSAAAFDALGIVTQD 134 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R++P ES +A+SASGALE +P+IR+ NL AL+++ GF IGL+ + + L Q + Sbjct: 135 RHAPPESGTVARSASGALETVPWIRVVNLARALEEIAEAGFWRIGLTGHANQTLAQAMGT 194 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +I ++LGAEG+G+R T+ +A L + +++LNVSN Sbjct: 195 QRICIVLGAEGEGMRQNTEAHCDELAKLPISPKVESLNVSN 235 >gi|220912252|ref|YP_002487561.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] gi|219859130|gb|ACL39472.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] Length = 297 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 87/280 (31%), Gaps = 28/280 (10%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--------IFQLLATKNALAR 80 + + + + + G +V AL + + + A++ L R Sbjct: 19 RVRDVAKLAGRP-ARLKRGHFLAEGPQSVREALRLHQERLAAGSPGVVTDVYASEACLDR 77 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 L + + + +A+ +S +L+ VL Sbjct: 78 FPEFEELAEGTNAWLATDEVLAAMADTVNPQGIIAVCRFVDVSLESVLDAGPRLIAVLCQ 137 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N G +LR+A + D ++ T + +S +G+L H+P + + + + Sbjct: 138 VRDPGNAGTVLRAADSAGADAVVLTGSSVDIYNPKAVRSTAGSLFHLPVVLGAEVAHLAE 197 Query: 201 KMHSW------------------GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 S + P A + G E +GL Sbjct: 198 ACKSRGIGILAADGYGSLNLDALQDENARRRLTGSGPDSAYDLGGPTAWLFGNEAQGLSE 257 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HFA 281 E A + + G ++LN+ AA V LY + Sbjct: 258 AELELADHRVAVPVYGAAESLNLGTAATVCLYASARSQRN 297 >gi|119716827|ref|YP_923792.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614] gi|119537488|gb|ABL82105.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614] Length = 267 Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 64/268 (23%), Positives = 109/268 (40%), Gaps = 8/268 (2%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 + D +L DY+ ++ + + G V ++ L Sbjct: 6 EITDPTDPRL----ADYRDLRDVELRKHLEATHGLFLAEGEKVVRRSVEAGFTP-RSFLM 60 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 L L + P V +++ G LA L + ++ Sbjct: 61 APRWLDGLAEVLDRS-DAPCYVVSAALAEEVTGFHVHRGALASLERRPLPSVDSVLSGAR 119 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++VL+ + D NIGAI RS A D ++ R + K A GA+ +P+ R+ Sbjct: 120 SVLVLEDIVDHTNIGAIFRSGAALGFDAVLLAPRCADPLYRRSIKVAMGAVFAVPWTRLP 179 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSM 251 + AL ++ + GF T+ L+ + + DK+AL+LG+EG GL P+ ++ A Sbjct: 180 DWYGALPELSAAGFTTVALTLATDAVPIESAVAGLDKVALVLGSEGHGLSPRWEQAADRR 239 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M I +LNV+ A AVA Y+T Sbjct: 240 AIIPMREGIDSLNVAAATAVACYVTARR 267 >gi|299143771|ref|ZP_07036851.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518256|gb|EFI41995.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 226 Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 109/224 (48%), Gaps = 5/224 (2%) Query: 59 AALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L N K++ + + + + + + +D++ + A HQG+ Sbjct: 1 EILKNKKADKLYVQMGNFEGSMKKIYAMAKEQNILITELNKKKLDELS-EGANHQGVVAL 59 Query: 118 TAPLLSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + TL+ + + + +++LD + DPHN+GAI RSA AF GII K S + V Sbjct: 60 VSGYEYSTLEDLILNGINQILILDKIEDPHNLGAIARSAEAFGFKGIIIPKHKSVYVNDV 119 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + K+++GA++++ + +NL+++++K+ G+ G + + KI L++G Sbjct: 120 VYKTSAGAIDNVSVVIETNLSNSIEKLKENGYWIFGA-DMEGEEYFKSDLKGKIVLVVGN 178 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 EGKGL P ++ + + M G I +LN S AA++ + Sbjct: 179 EGKGLSPAVRKHCDKIISIPMAGKINSLNASCAASILMAEVLKQ 222 >gi|261879397|ref|ZP_06005824.1| TrmH family RNA methyltransferase [Prevotella bergensis DSM 17361] gi|270333965|gb|EFA44751.1| TrmH family RNA methyltransferase [Prevotella bergensis DSM 17361] Length = 273 Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 94/260 (36%), Gaps = 12/260 (4%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 K + S K ++ + G V+ L S L+AT A + N Sbjct: 20 ATVKLIHSLGLK-KNRDKEGLFVAEGPKVVADLLAVASP--LHLIATSEWFAGHRMEMNQ 76 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQ--GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + V + K ++ Q G+ T + QL + LD V DP Sbjct: 77 WGKVKISEVTEDELRKASFQKTPQQVIGVFPIPETEAQDTATDMPGRQLCLALDGVQDPG 136 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R A F + + ++ + + + + ++ G++ + I+ H Sbjct: 137 NLGTIIRIADWFGIEHVYCSEDTADAYNPKVVQATMGSIARVKVHSINLPQFIT---HLP 193 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIK 261 I + + + + + +++G EGKG+ + ++ T + + Sbjct: 194 EGVPIYGTLLDGQNIYTQELSANGLIVMGNEGKGISEEIRKLVTHKLFIPSFPPDTDTAE 253 Query: 262 ALNVSNAAAVALYITQNHFA 281 +LNV+ A AV + + Sbjct: 254 SLNVAIATAVTCAEFRRRIS 273 >gi|50364903|ref|YP_053328.1| rRNA methylase [Mesoplasma florum L1] gi|50363459|gb|AAT75444.1| rRNA methylase [Mesoplasma florum L1] Length = 242 Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 91/244 (37%), Gaps = 12/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 +YG H V+ + I ++ + + + F + V + I+ +V Sbjct: 2 ENLSLIYGKHAVNEFIKKHPNLIKKIYISSDFKIDKS-----NNEFQILKVDLKKIENLV 56 Query: 106 GKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 G EA HQG+ E +L+++LD + DP+N GAI+RS+ Sbjct: 57 GNEANHQGIVAEVKEFNYKPFGEALNQMKDDEPKLVLILDQIQDPYNFGAIIRSSSLLGV 116 Query: 160 DGIITTKRYSPSESAVLAKSASGA-LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D I+ ++ + K+++G + + + + + Sbjct: 117 DQIVILDHKQVFVNSTVVKTSAGTVYDMNISKVTNLSNAIKDLQKNGFWIYSTHLNSESN 176 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + ++ A+++G E G+ + + + I + N + A ++ LY N Sbjct: 177 DMRKVDFANRTAIVIGNEHNGVSDLVMKNSDMNVFIPSTNTIDSYNANVATSLILYHVAN 236 Query: 279 HFAK 282 + K Sbjct: 237 YIGK 240 >gi|326334732|ref|ZP_08200939.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693182|gb|EGD35114.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 251 Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 108/239 (45%), Gaps = 11/239 (4%) Query: 51 LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++G+H V A+ KIF K AL + P VP + + ++ Sbjct: 11 IFGLHPVIEAIEAGKTIDKIFIQKGLKGALFSQLLSLVETYHLPHSYVPIEKLQRLT--R 68 Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQG+ +P+ L+ L ++LDH++D N+GAI+R+A +G Sbjct: 69 GNHQGIVALLSPVEFVPLEELVLSTIESGRVPLFLILDHLSDVRNVGAIIRTAECTGVNG 128 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 I+ K+ S S + K+++GA+ ++P ++ NL DA+ + G + +G + + L Sbjct: 129 ILLPKQGSASIGEDMVKTSAGAIFNLPLCKVDNLIDAIYYLQGSGIKVLGATEKASSLLY 188 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ +A+++GAE G+ + A L + G +LNVS A LY Sbjct: 189 DFSLSEPLAIVMGAEDTGISKGVLKVLDEKAKLPLQGETSSLNVSVACGAFLYEVVRQR 247 >gi|312129342|ref|YP_003996682.1| tRNA/rRNA methyltransferase (spou) [Leadbetterella byssophila DSM 17132] gi|311905888|gb|ADQ16329.1| tRNA/rRNA methyltransferase (SpoU) [Leadbetterella byssophila DSM 17132] Length = 241 Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 43/243 (17%), Positives = 97/243 (39%), Gaps = 16/243 (6%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +QS + K ++ ++ + G +S L++ + I Q+ T+ +L NL Sbjct: 8 KYIQSLHNK-KYRTEYGQFLVEGEKGISELLHSDYQ-IIQIYITEEFAQKLPTHKNL--- 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 P I+ + ++ G+A+ + +++LD + DP N+G I Sbjct: 63 ---MVAPVTQIESVSTYKSNASGIAVVQQKRFEVPENFQGR---ILILDGLRDPGNLGTI 116 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + + +I ++ + + S G+ + + + + H + Sbjct: 117 IRLADWYGIEHLICSEDTVEFYNPKVISSTMGSFTRVKPYYLDIHSFMEKYPHPILGADL 176 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + K +AL++G+E G+ +T+ T ++ G ++LN + A Sbjct: 177 EGQNVHKWD-----FPKNMALVIGSESHGISAETERQLTDKVNIPRIGKAESLNAAMATG 231 Query: 271 VAL 273 + L Sbjct: 232 IIL 234 >gi|237785425|ref|YP_002906130.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] gi|237758337|gb|ACR17587.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] Length = 324 Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 93/288 (32%), Gaps = 35/288 (12%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + KS + + + G + V AL+ K + + + Sbjct: 30 PRIIAARKLL-KSAGRRKEKKFLVEGFNGVEGALSAGVAKEVFVADSAWDKFSTLRELAR 88 Query: 88 PHPFPVKTVPPQT---IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 PV + + + + V V L + + S A R L+ V ++DP Sbjct: 89 EQHVPVSVIDDKAASALSETVSHSGVCATCQLLSTSVESCINRARRGRGLVAVGIDMSDP 148 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD------- 197 N G +R+A A D ++ + +SA+G++ IP R ++T+ Sbjct: 149 GNAGTFIRTADAVGADCVVFLGNSVDIHNGKTVRSAAGSVFRIPIGRERDITNSLADLSS 208 Query: 198 ------------------------ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + + +G + D+ + A + Sbjct: 209 AGFQIVATTIDGETSLDDAADDAAQWRIRRVQATEGVGGTEDTGASSNPPMMTRPSAWLF 268 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G E GL + A + + G ++ NV+ AAA+ LY + Sbjct: 269 GNEAHGLSTDVVDFANVRVRIPIRGSAESFNVAGAAAITLYEASRALS 316 >gi|294790826|ref|ZP_06755984.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304] gi|294458723|gb|EFG27076.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304] Length = 284 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 92/261 (35%), Gaps = 13/261 (4%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLP 88 Y ++ ++R + AL + + L+ + + A Sbjct: 20 YTRLTEVQLRNRLEPDKGIFIAESPKVIDRALAAGVQPLSFLVEGSWLDSMKDLFSAAEK 79 Query: 89 H---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV + KI G L+ L D R++ + VL+++ D Sbjct: 80 RWGYDIPVFVAGFDLLHKITGYRLHRGALSAMRRWKLPTVEDICRDAHRVAVLENIVDYT 139 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI---------RISNLT 196 N+GAI+RSA A + D ++ T + A+ + G + +P+ Sbjct: 140 NVGAIMRSAAALNVDAVLLTPSCADPLYRRAARVSMGTVFQVPWTRIGGDNPHAWPQPSI 199 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 L + K D++ALI G EG GL +T A + M Sbjct: 200 HQLTDLGFTTVSMALTDDSISLDQLVSRKIDRLALIFGTEGDGLSRRTLAAADLTVKIPM 259 Query: 257 PGIIKALNVSNAAAVALYITQ 277 + +LNV+ ++AVA Y T Sbjct: 260 SHQVDSLNVAASSAVAFYATM 280 >gi|295698469|ref|YP_003603124.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Riesia pediculicola USDA] gi|291157499|gb|ADD79944.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Riesia pediculicola USDA] Length = 259 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 101/240 (42%), Gaps = 8/240 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVG 106 +YG+HTV++ LN+ + + KN+ + ++ V + +D + Sbjct: 5 IIYGIHTVNSYLNDKNVVFELVYILKNSRNNRIFQIKKKLESFGVSIRLVNRRFLDHLSN 64 Query: 107 KEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + LA+ +++ + L ++LD + D N+G+ LR+A F D Sbjct: 65 YISHQGILAVINCFQKKASMNILNKIPFQKKILFLILDGITDVRNLGSCLRTAHFFGVDA 124 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I +K S + ++ K + GA ++P IR + + + ++ + Sbjct: 125 VIVSKNRSARINEIVEKVSCGASRYVPMIRTNLVNCIEKLKKYDVQVLGTDEKANRSIYD 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 EI KIA+I+G E KG+R ++ + + + +LNVS A + L+ Sbjct: 185 LEINEKKIAIIVGNEEKGIRQIIKKNCSRLFRIPTKKQTSSLNVSVTAGIFLFEVCRQRK 244 >gi|308177384|ref|YP_003916790.1| RNA methyltransferase [Arthrobacter arilaitensis Re117] gi|307744847|emb|CBT75819.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117] Length = 277 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 53/279 (18%), Positives = 100/279 (35%), Gaps = 10/279 (3%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I E+I + D A+L +Y ++ + + R + V A Sbjct: 1 MPEILNP--ERIMQVADLSDARLD----EYLRLSEAHLRMRTDVENGLYIAESTKVVQRA 54 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 +N L + L +L + N P+ + ++ +VG +A P Sbjct: 55 INAEHVP-RSFLLAEKHLDQLVEEFNRFPDAPIFIGDDRQLEDLVGFHLHRGAMASMNRP 113 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + S + +L+ + D N+GAI+RSA D ++ T + A+ + Sbjct: 114 EPLDLSQVLEASSRVAILEDIADHTNLGAIIRSASGLGVDAVLLTPKCVDPWYRRSARVS 173 Query: 181 SGALE---HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 G + + + L++ Q K+A+ILG EG Sbjct: 174 MGTVFDLPWVRMLSWPEDIRTLKQHGYQMLAMELTDDAIPLNEVQITAGQKVAMILGNEG 233 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +G+ + E + M + +LNV A+A+A + Sbjct: 234 RGVTAQALEAVDQTVIIPMHREVDSLNVGAASAIAFWHL 272 >gi|269303406|gb|ACZ33506.1| RNA methyltransferase, TrmH family [Chlamydophila pneumoniae LPCoLN] Length = 265 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 81/260 (31%), Gaps = 7/260 (2%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 +++ K+ + K + + G + AL +T + ++ Sbjct: 6 KHNPLVKE--ALALKRSRCRKSSWFLVEGAREIQKALRAGYLCQHVFCSTHLSEKEKEFL 63 Query: 85 ANLPHP-FPVKTVPPQTIDKIV---GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 L + T+ ++ ++ + + ++++ Sbjct: 64 YELKRNSTKILYCLDSTLAQLSFKEHHDSFVAVIQKRVWNKEDFLIQRKNAQPFYLIIEQ 123 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V P N+GAILR A DG+I + + +S+ GA+ +P + IS Sbjct: 124 VEKPGNVGAILRIADGAGVDGVILCNPIVDLYNPNVVRSSLGAVFSLPILSISREEGKEL 183 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + AL+ G+E GL S L M G Sbjct: 184 FKQEGWTVFVTSPRAETMYFSKNYL-GPTALVFGSEKDGLTEDWFSEDFSEIALPMLGES 242 Query: 261 KALNVSNAAAVALYITQNHF 280 +LN++ + A Y Sbjct: 243 DSLNLATSVAAVAYEVVRQR 262 >gi|300789799|ref|YP_003770090.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32] gi|299799313|gb|ADJ49688.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32] Length = 253 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 99/242 (40%), Gaps = 8/242 (3%) Query: 46 PENLF-LYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTI 101 + +YG V AL + ++ +++ A A PV+ + Sbjct: 10 KDRFLTVYGRKPVLEALADDGLRVDKVILADTARGPGAAEIQRAAKAAGVPVQRASAHRV 69 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD----AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + G QG+ + L R +++LD + P N+G ILR+A A Sbjct: 70 KVLAGNGKQDQGVLADVLAPRMRALSAALADRRPPSRVLLLDGITTPANVGMILRTATAA 129 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I +R + ++ K+++G P +R + +A + + GF L + ++ Sbjct: 130 GLDGVIVPRRGVAALDPLVVKASAGVAFRAPVLRCGSAREAAEMLAEAGFGLYALGASAR 189 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + A +LG E G+ + E T + MPG +++LNVS AAAV + Sbjct: 190 TTVFDVDLPQRAAFVLGGETAGVGAEVGELVTEWLSIPMPGDVESLNVSAAAAVLSFELV 249 Query: 278 NH 279 Sbjct: 250 RR 251 >gi|158317422|ref|YP_001509930.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec] gi|158112827|gb|ABW15024.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec] Length = 332 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 55/298 (18%), Positives = 100/298 (33%), Gaps = 35/298 (11%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67 + +I ++ D ++ DY + + R G + AL R Sbjct: 33 RERRIVAIDDPADPRVE----DYVALTDVALRRRREPAEGLFIAEGERVIDRALRAGYRP 88 Query: 68 IFQLLATK----------------------------NALARLDWDANLPHPFPVKTVPPQ 99 L++ + H PV P Sbjct: 89 RSVLVSPARLGGVPEGFWSTPTHGGHGECGGHGESAGHDEHSGRERPDHHEAPVYVAGPA 148 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + +I G E LA L ++ +R ++ ++V + + N+GAI RSA Sbjct: 149 VLAQITGFEVHRGALASMCRRPLLNPVELLRVARRVLVCEDLVSHTNLGAIFRSAAGLGM 208 Query: 160 DGIITTKRYSPSESAVLAKSASG---ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D ++ + R + + + G A+ + L + S Sbjct: 209 DAVMLSPRCADPLYRRSVRVSMGEVFAVPYARLDPWPGALSLLGEAGFEVLALTPASDAD 268 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + D++AL+LG EG+GL + TAT + M + +LNV+ AA+A Y Sbjct: 269 ELAVATAGPGDRVALLLGTEGQGLTGEVLATATRRVRIPMAHGVDSLNVAATAAIACY 326 >gi|156932878|ref|YP_001436794.1| putative methyltransferase [Cronobacter sakazakii ATCC BAA-894] gi|156531132|gb|ABU75958.1| hypothetical protein ESA_00679 [Cronobacter sakazakii ATCC BAA-894] Length = 357 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 98/244 (40%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 113 RRQRAEETRVYGENACQALFQSRPESIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDA 172 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ ++D + ++ L+ V +PHN+GAI+RS Sbjct: 173 ELTKASGTE-HHGGVCFLIKKRSGASVDQWLSKAGDEDCVLALEDVGNPHNLGAIVRSCA 231 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + S ES ++A G EH+ I + +DAL + + G+ + SS Sbjct: 232 HFGVKGVVV-QDASLLESGAAVRTAEGGAEHVEPITGDSFSDALAQFRAAGYAIVTTSSH 290 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 PL + K+ L+LG E +G+ TQ A + G +++LNVS A V L Sbjct: 291 KGTPLFKATLPKKMVLVLGQESEGISEATQANADLSLSIDGTGNVESLNVSVATGVLLAE 350 Query: 276 TQNH 279 Sbjct: 351 WWRQ 354 >gi|116751047|ref|YP_847734.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB] gi|116700111|gb|ABK19299.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobacter fumaroxidans MPOB] Length = 252 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 108/237 (45%), Gaps = 7/237 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++ G + V L ++ +++ + + R + + + +VG Sbjct: 13 WVSGFNPVREVLLTGRVEVLEMIVARSDQRVRELVELGALRGIAPRQETRDGLSALVGH- 71 Query: 109 AVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 A HQG+AL L+ + L++LD + DP N+GA+LRSA G+I Sbjct: 72 AHHQGVALRMREFPYAALEALLEKPTGEREPLVILDCLQDPQNLGAMLRSACFLGARGVI 131 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + S ++ + + A+GA ++P I+++NL AL+++ G GL + + + + Sbjct: 132 VPRDRSARVTSTVIRIAAGATAYLPVIQVNNLVRALEQLKECGLWIFGLDAQAAQTIYDA 191 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L++G E KGLRP +M + G +++LN + + A+AL Q Sbjct: 192 DLTVPLGLVVGNEQKGLRPLVARACDAMVRIPEHGPLQSLNAATSGAIALAEVQRRR 248 >gi|313678222|ref|YP_004055962.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45] gi|312950379|gb|ADR24974.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45] Length = 243 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 100/271 (36%), Gaps = 33/271 (12%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68 +++I S + + K+++ E + G H V L + Sbjct: 2 NQRITSTQ----------NPKIKQLRKIFND----KNSEFFIVEGYHLVEEVLK--ENLV 45 Query: 69 FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 +L + A+ + V + I + +AL + L Sbjct: 46 IELYELDSKTAKYENSI---------IVSDNVLKAITKTKTPEGVVALCRKKSNTSEL-- 94 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 ++ LD+V DP N+G I+R+A +F+ D +++ + + ++ A + + Sbjct: 95 ---GNRVVFLDNVQDPGNVGTIIRAAKSFNFDTVVSNVNFYNDKIVRSSQGALFTVNLVN 151 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQET 247 Y + + + + S + P+ + N+KI +I G EG G + + Sbjct: 152 YAYDNLHSVLKKYKQNGFKIYCTSLSKNSVPINKISFENEKIVIIFGNEGSGASETSIKI 211 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + ++ + ++LNV+ A + LY Sbjct: 212 ADKLVYVPI--DFESLNVAVCAGIVLYEANK 240 >gi|254514484|ref|ZP_05126545.1| trna/rrna methyltransferase [gamma proteobacterium NOR5-3] gi|219676727|gb|EED33092.1| trna/rrna methyltransferase [gamma proteobacterium NOR5-3] Length = 263 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 101/258 (39%), Gaps = 17/258 (6%) Query: 39 KSRHTSQPENLF-LYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPV 93 + + +YG V ALN+ L + + R DA Sbjct: 5 RKPDRQERRRFLTVYGRKAVLEALNDRHMDCRILHLASSNRSGGVLREIQDAADARGLDC 64 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----------RNSQLLMVLDHVN 142 + + + +I QG+AL+ LD Q L+ LD V Sbjct: 65 REHSREELARISRNGRQDQGVALDVYCPAMRELDDYINDINDISGESGKPQRLLALDGVT 124 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 +P N+G ++RSA A DG++ R +P+ ++ K+++G + P +R ++L A Q + Sbjct: 125 NPQNMGMVIRSAAAAGIDGVLYADRGNPALGPLVIKASAGTVFRAPLLRCASLFKASQSL 184 Query: 203 HSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 GF+ L + + + + + +LG E G+ + + M ++ Sbjct: 185 CEQGFRLYRLQASGSRTLFDGQPFAHRALFVLGGESDGISRELSALPGENLSIPMANGVE 244 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV+ + A+ Y+ Sbjct: 245 SLNVAVSGALVAYVAATQ 262 >gi|159899036|ref|YP_001545283.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC 23779] gi|159892075|gb|ABX05155.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC 23779] Length = 266 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 45/255 (17%), Positives = 93/255 (36%), Gaps = 9/255 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-----SRKIFQLLATKNALARLDWD 84 K+++ + + ++ G V+ A+N +LL+ A Sbjct: 12 VKEIRQL-RSRDARDRTGTYYIEGARIVAQAINAGLPLEIGAISLELLSRTEHSAGTVSA 70 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 V + I KE + G+ P + + + L+ V +P Sbjct: 71 LRKAAKQMV-ELSASAFAGISFKENLQ-GIGAVVKLQQEPLSNVQLTDRPWVALNGVGNP 128 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GAI+R+ A C+G+I + +++ G+L + + + + Sbjct: 129 GNLGAIMRTCDAVGCEGLILIGDTTDPYHPAAIRASMGSLF-ALRMVRTTFDEFAAWKQT 187 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G+ IG + D ++ + L++G+E GL Q ++ + M G +LN Sbjct: 188 NGYHVIGTTPDVEQEYQTISYPSPAILLMGSERLGLSVGEQSVCDTLVRIPMAGTCDSLN 247 Query: 265 VSNAAAVALYITQNH 279 + A ++ LY Sbjct: 248 LGVATSIVLYEMFRQ 262 >gi|283769025|ref|ZP_06341931.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219] gi|283104382|gb|EFC05759.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219] Length = 237 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 93/235 (39%), Gaps = 6/235 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106 + G +V AAL R + L R PV + + I+ + Sbjct: 2 IIEGATSVKAALEAKKRVVNALYVDDKKKDRNLNYILFKAHEAHVPVYRLKREEINTLA- 60 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 H GL + + L+ R+S LL+ L+ V DP N G ++R+A + DGI+ + Sbjct: 61 FGKTHGGLLADVEERIMDHLEISRSSFLLV-LEGVVDPFNFGYMVRTAYSAGVDGILIPE 119 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + +V+ KS++GA +H I +L L+ + GF D+ ++ Sbjct: 120 YHWHDLESVILKSSAGAFDHCSIIPSKDLAQDLRLLKEKGFTIYAGYRDNAIVYDEADYT 179 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVALYITQNHF 280 + +G E +GL + E ++ K LN ++A +V + Sbjct: 180 NPTVFCVGGELRGLSKQVLEQVDQAVYIPYANGFKNALNAASACSVFCFEVLRQR 234 >gi|298209014|ref|YP_003717193.1| putative tRNA/rRNA methyltransferase [Croceibacter atlanticus HTCC2559] gi|83848941|gb|EAP86810.1| putative tRNA/rRNA methyltransferase [Croceibacter atlanticus HTCC2559] Length = 244 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 45/255 (17%), Positives = 88/255 (34%), Gaps = 22/255 (8%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K ++S NQK + + + GV +++ F + + + L H Sbjct: 8 KLIRSLNQK-KFRLKHGLFVVEGVKSINE---------FLNSSLELYSLLSTENVFLSHS 57 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + + + + I LA+ P+ R L+ LD V DP N+G I Sbjct: 58 KETQLISLKELQAISHLSTAQVALAVFKIPVPKTDFKQNR----LLALDGVRDPGNLGTI 113 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R F+ +I +K + + ++ G+L + I + Sbjct: 114 IRLCDWFNIQSLICSKDTVDCYNPKVVQATMGSLTRVEVIYTDLHKHLNTLDLPIFGTFM 173 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSN 267 S KP + +++G E G+ + +E + G ++LNV+ Sbjct: 174 NGESVYSKP-----LPEDFVIVMGNEANGVTKEIEELCNHRIAIPQFGSGAPTESLNVAT 228 Query: 268 AAAVALYITQNHFAK 282 A A+ L + Sbjct: 229 ATAITLSEFSRRLIE 243 >gi|293374145|ref|ZP_06620479.1| RNA methyltransferase, TrmH family [Turicibacter sanguinis PC909] gi|325837433|ref|ZP_08166415.1| RNA methyltransferase, TrmH family [Turicibacter sp. HGF1] gi|292647248|gb|EFF65224.1| RNA methyltransferase, TrmH family [Turicibacter sanguinis PC909] gi|325490965|gb|EGC93263.1| RNA methyltransferase, TrmH family [Turicibacter sp. HGF1] Length = 248 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 90/238 (37%), Gaps = 11/238 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + Q + G H V A+ + ++L + L+ D + + + Sbjct: 22 YRYQSLEYIVEGEHLVLEAIKMN--VVKEVLVKEGTTLHLNEDYHAVSN--IYLLKENLF 77 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 D+I E + ++N L++LD V DP N+G +LRSAVAF DG Sbjct: 78 DQIASTETPQP-----IMAVCEMKTMNIKNQHRLLLLDRVQDPGNLGTLLRSAVAFGFDG 132 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +S GA+ +P + + + + E Sbjct: 133 VILGDGCVDLYNEKVIRSTQGAIFKLPILNQNLEEAVTSLKEQGVRIYGTSLQNGRPLNE 192 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E K+A ILG EG G+ + + M I++LNVS A ++ +Y Sbjct: 193 IEE-TMKMAFILGNEGSGVSKELLSLTDGNIFIEMSENIESLNVSIAGSIIMY-RFRQ 248 >gi|119960734|ref|YP_947381.1| 23S rRNA methyltransferase [Arthrobacter aurescens TC1] gi|119947593|gb|ABM06504.1| putative 23S rRNA methyltransferase [Arthrobacter aurescens TC1] Length = 303 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 92/276 (33%), Gaps = 27/276 (9%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--------NNPSRKIFQLLATKNALAR 80 + + + + G V AL + ++ A++ L R Sbjct: 19 RVRDVAKLAGRP-ARLKRGRFLAEGPQAVREALTLHRERTAAGGPAVVHEVFASEACLER 77 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 L A+L ++ + + + +A+ + +S +L+ V+ Sbjct: 78 LPELADLALGTLLRLASDEVLAAMADTVNPQGIVAVCSFVDVSLDSVLDAGPRLIAVMCQ 137 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N G +LR+A A D ++ T + +S +G+L H+P + +++ + + Sbjct: 138 VRDPGNAGTVLRAADAAGADAVVLTGSSVDIYNPKAVRSTAGSLFHLPVVLGADVEELVA 197 Query: 201 KMHSW------------------GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + + + A + G E +GL Sbjct: 198 QCRRRGIGILAADGYGTVNLDKLQDENAARRLGNGSVASDYALESPTAWLFGNEAQGLSD 257 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + + G ++LN+ AA V LY + Sbjct: 258 AELALADHRVAVPVYGAAESLNLGTAATVCLYASAR 293 >gi|77412543|ref|ZP_00788838.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae CJB111] gi|77161411|gb|EAO72427.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae CJB111] Length = 247 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 10/230 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + + G H A ++ + + T+ A+ RL P V + ++ Sbjct: 25 RKSSYLIEGWHLFEEAEKYGAQFLN-IFVTETAIDRLR------KPERAIVVTDDILKEL 77 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + QG+ E A + D + L++ + V DP N+G ++R+A A + D + Sbjct: 78 TDSQ-TPQGIVAEIAFQETRWTDIKKGRFLVL--EDVQDPGNLGTMVRTADAANFDAVFL 134 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 +++ + + +S G+ H+P R+ S+ + Sbjct: 135 SQKSADLYNQKTLRSMQGSHFHLPVFRVEIEQFVNFCKAEGITMIATTLSEQSVNYKNLP 194 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K D ALI+G EG+G+ E A +AH+ MPG ++LNV+ AA V ++ Sbjct: 195 KYDYFALIMGNEGQGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIF 244 >gi|257125181|ref|YP_003163295.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia buccalis C-1013-b] gi|257049120|gb|ACV38304.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia buccalis C-1013-b] Length = 232 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 3/230 (1%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G++ V L + K+ K + + + +T + G Sbjct: 4 IIGINPVIEVLKSDKNIEKLEVYKKIKKETIKEILNLASKRNIKIFYTDRRT-ENSQGVV 62 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 A+ + +++VLD V DP N GAI+RSA F DGII R Sbjct: 63 ALVSEFDYYVDFTAFLEKLLRKEKSIVVVLDQVQDPRNFGAIIRSAECFGVDGIIIQDRN 122 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S + + KS++GA+EH+ ++++N++D + K+ +G+ G +D + QE +K Sbjct: 123 SVKVTETVVKSSTGAIEHVDIVKVTNISDTIDKLKKYGYTVYGAEADGQNYYYQENYPEK 182 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+LG+EG G+R K +E + +H+ G I +LNVS A + L Sbjct: 183 ACLVLGSEGNGMRKKVKEHCDKIVKIHLKGEINSLNVSVAGGIILSEMSK 232 >gi|291320023|ref|YP_003515281.1| rRNA methylase [Mycoplasma agalactiae] gi|290752352|emb|CBH40323.1| rRNA methylase [Mycoplasma agalactiae] Length = 243 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 98/271 (36%), Gaps = 33/271 (12%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68 S++I S++ + K+++ E + G H V AL Sbjct: 2 SQRITSVQ----------NPKIKQLRKIFND----KNSEFFIVEGYHLVEEALKEN---- 43 Query: 69 FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 L ++ +D ++ V ++ + + +AL L Sbjct: 44 LVLELYESDYKTAIYDNSIL-------VSQNVLEALTKTKNPEGIVALCRKKPNFEQL-- 94 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 ++ LD+V DP N+G I+R A +F D +++ + + ++ A + + Sbjct: 95 ---GNKVVFLDNVQDPGNVGTIIRIAKSFGFDTVVSNVNFYNDKVIRSSQGALFTVNLVN 151 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQET 247 Y + L+ + S +E+ +DK ++ G EG G+ + Sbjct: 152 YNYDNLTNILLKYKQNGFKIYATSLDKSSVEIEKVKFESDKAVIVFGNEGSGISSALADI 211 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + ++ + ++LNV+ A + LY Sbjct: 212 ADMLIYVPI--NFESLNVAVCAGIVLYEANK 240 >gi|325830209|ref|ZP_08163666.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1] gi|325487676|gb|EGC90114.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1] Length = 283 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 89/268 (33%), Gaps = 19/268 (7%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLP 88 + ++ +S+ + + AL + L+ K + D Sbjct: 16 FARLTEAQLRSKLEPEKALFIAESGKVIERALAAGMEPLSLLMEAKWLPAMQPIIDEISA 75 Query: 89 H---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV P + K+ G E L P L D VR ++ + VL+ + + Sbjct: 76 RWGDGVPVFVAPHDELTKLTGFELTRGALGAFRRPQLPSVADIVRGARRIAVLEDITNHT 135 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI RSA A D ++ T + + G + +P+ RI A Sbjct: 136 NVGAIFRSAAALGIDAVLVTPACYDPLYRRAVRVSMGTVFQVPWTRIGEEAGAGATGTGG 195 Query: 206 GFQTIGLSSDSKKPLEQEIK---------------NDKIALILGAEGKGLRPKTQETATS 250 T +++AL+ G EG GL T Sbjct: 196 WAPTGVPLLHELGFKTAAFALTDDSVPLDDPALNAEERLALVFGTEGDGLAHDTIARCDY 255 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278 + M + +LNV+ A+AVA + + Sbjct: 256 TVRIPMACGVDSLNVAAASAVAFWQLRR 283 >gi|257789988|ref|YP_003180594.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243] gi|317489433|ref|ZP_07947943.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA] gi|257473885|gb|ACV54205.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243] gi|316911362|gb|EFV32961.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA] Length = 283 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 51/268 (19%), Positives = 88/268 (32%), Gaps = 19/268 (7%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLP 88 + ++ +S+ + + AL + L+ K + D Sbjct: 16 FARLTEAQLRSKLEPEKALFIAESGKVIERALAAGMEPLSLLMEAKWLPAMQPIIDEISA 75 Query: 89 H---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV P + K+ G E L P L D VR ++ + VL+ + + Sbjct: 76 RWGDGVPVFVAPHDELTKLTGFELTRGALGAFRRPQLPSVADIVRGARRITVLEDITNHT 135 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI RSA A D ++ T + + G + +P+ RI A Sbjct: 136 NVGAIFRSAAALGIDAVLVTPACYDPLYRRAVRVSMGTVFQVPWTRIGEEAGAGATGTGG 195 Query: 206 GFQTIGLSSDSKKPLEQEIK---------------NDKIALILGAEGKGLRPKTQETATS 250 +++AL+ G EG GL T Sbjct: 196 WAPDGVPLLHELGFKTAAFALTDDSVPLDDPALNAEERLALVFGTEGDGLAHDTIARCDY 255 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278 + M + +LNV+ A+AVA + + Sbjct: 256 TVRIPMACGVDSLNVAAASAVAFWQLRR 283 >gi|331698924|ref|YP_004335163.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans CB1190] gi|326953613|gb|AEA27310.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans CB1190] Length = 256 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 107/252 (42%), Gaps = 11/252 (4%) Query: 39 KSRHTSQPENLF-LYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVK 94 +S S + +YG V AL + S + ++L + + DA V+ Sbjct: 5 RSSTRSPKDTFITVYGRKPVLEALADESLVVDKVLLAEGSRGEPVRAIRDAARARGVRVE 64 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIG 148 T + + G QG+ + ++ R ++VLD V +P N+G Sbjct: 65 TASAHRVKVLAGNGRHDQGVLADVVAPRMAPVEEFVSDLGTRRGASVLVLDAVTNPANVG 124 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ILRSA A DG++ +R P+ ++ K+++G P +R + + + GF Sbjct: 125 MILRSATAAGLDGVLLPRRGVPAIDPLVIKASAGVAFSAPVLRSATAAQGCAVLRAAGFA 184 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + + L + +++AL+LG E +GL +E + M G +++LNV++A Sbjct: 185 -VHGLAAGGDSLLEAELPERVALVLGNESEGLSADVREELDGTLAIPMFGGVESLNVASA 243 Query: 269 AAVALYITQNHF 280 AVA Y Sbjct: 244 GAVAAYELLRRR 255 >gi|38233380|ref|NP_939147.1| putative methyltransferase [Corynebacterium diphtheriae NCTC 13129] gi|38199640|emb|CAE49299.1| Putative methyltransferase [Corynebacterium diphtheriae] Length = 298 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 101/283 (35%), Gaps = 19/283 (6%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I L D +L D++ + + + + G V L + + L Sbjct: 20 IEHLTDPLDPRLD----DFRDLNHSDNRPDLPGGKGLVIAEG-SLVIPRLVDSRFPVRCL 74 Query: 72 LATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 + N L +L + +L PV +V +T+ ++ G + LA A Sbjct: 75 VGFPNKLEKLLANVHLRAQLADVPVFSVDRETLAQVAGFDMHRGLLASADRVAGMSIAQA 134 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + ++ +++L+ V D NIG++ R+A D ++ + + + + G + P Sbjct: 135 IDGARTVVILEGVGDHENIGSMFRNAAGMGVDAVLFGNGCADPLYRRVVRVSMGHVLRTP 194 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-----------KIALILGAEG 237 + + Q+ + + D K+AL++GAEG Sbjct: 195 FAHFGGKSTTWQRELQELRDAGFHIVSLTPNPQADHLADALVDANGAPYAKVALLVGAEG 254 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 GL A + M +LN++ +AA+A Y Sbjct: 255 PGLTEHAMRATDQRARIPMASGTDSLNLATSAAIAFYERDRSL 297 >gi|256420719|ref|YP_003121372.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588] gi|256035627|gb|ACU59171.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588] Length = 248 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 85/246 (34%), Gaps = 7/246 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 K +QS K ++ + G V L + ++ AT +A + Sbjct: 5 AQIKYIQSLQHK-KYRQKSSQFMAEGDKIVPELLQEG-VPVKEVYATSAWIAAHRALLDR 62 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V V + ++ +Q +AL P + + + L+ + DP N+ Sbjct: 63 TKDVNVTEVDENVLRQLSALTTPNQAIALLDIPGSAAIAPGSLKGTVSLALETIQDPGNL 122 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R A F II T + + ++ G++ + + T + Sbjct: 123 GTIIRIADWFGIRQIICTPDCVDAYNPKTIQATMGSIARVKILESDISTLIKEAGVPSYA 182 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T+ ++ +E +++G E +GL +T + G ++LN Sbjct: 183 ATLHGRDITEFSKLEEG-----IILIGNESRGLSEAVISASTHKITIPRLGGAESLNAGV 237 Query: 268 AAAVAL 273 AA + Sbjct: 238 AAGIIC 243 >gi|305681831|ref|ZP_07404635.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii ATCC 14266] gi|305658304|gb|EFM47807.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii ATCC 14266] Length = 266 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 93/255 (36%), Gaps = 7/255 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 K + ++ + + G ++V AA+ S + T A R Sbjct: 15 PRIVKAAKLH-RTAVRRKEGRFIVEGSNSVEAAVATGSATD--VFITAEAAKRFADIVVA 71 Query: 88 PHPFPVKTVPPQTID--KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V P T + A+ L R+ +L+ V NDP Sbjct: 72 AGHMQVFVHPITTGAARSLADTATAPGIFAVCRPVLWRVGEALGRSPRLVTVAVGTNDPG 131 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--KMH 203 N G ++R + A D +I +S+ ++++G++ H+P R ++ + L+ K Sbjct: 132 NAGTLVRVSDALGADAVIFAGDTVDPQSSKAVRASAGSVFHVPVARSRDVGEVLRLLKGR 191 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + E+ A + G E GL P+ E A + + G ++L Sbjct: 192 GLQLMATAADGEVDLGTANELLARPTAWLFGNEAHGLGPELMELADHRVAIPIKGSAESL 251 Query: 264 NVSNAAAVALYITQN 278 N++ AA++ L+ + Sbjct: 252 NLATAASICLWESSK 266 >gi|67458667|ref|YP_246291.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2] gi|67004200|gb|AAY61126.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2] Length = 240 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 73/238 (30%), Positives = 122/238 (51%), Gaps = 5/238 (2%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 +++ ++YG H V +ALNNP R+I +L T+ D + L + V Sbjct: 2 QNKKLDSKNCYYMYGKHPVFSALNNPKRQIENILCTREIF---DTNKKLIGTRSYEIVNN 58 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K++ + A +D + +LD + D NIGAI+RS+ A Sbjct: 59 DILSKLLENQTHQGIAAKVRPIFSYNLEDVDIKNPKCKIAILDQITDTQNIGAIIRSSAA 118 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F D II + SP+ES +AK+A G LE IP I+++NL + + GF IGL+ + Sbjct: 119 FDIDAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSA 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ +DK+AL+ G+E KG+R +ET +A + + +++LNVSNAA++ + Sbjct: 179 NDYFTDKLISDKMALVFGSEDKGIRRLVEETCDYLAKILISKRVESLNVSNAASIIFH 236 >gi|226323091|ref|ZP_03798609.1| hypothetical protein COPCOM_00863 [Coprococcus comes ATCC 27758] gi|225208281|gb|EEG90635.1| hypothetical protein COPCOM_00863 [Coprococcus comes ATCC 27758] Length = 288 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 95/272 (34%), Gaps = 23/272 (8%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y + ++ + + AL+ + L+ K + + Sbjct: 18 YARYTEARLLNKDHPEEGMFIAESPKVIGRALDAGYEPLSVLVEKKQMEENEETSQIMNR 77 Query: 90 ----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + T + + K+ G + L L D + +L++V +P Sbjct: 78 FDDTKVSIFTADFEVLTKLTGFKLTRGMLCAMRRKPLRKFQDLCDGINRIAILENVQNPT 137 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI RSA A + + ++ + S ++ + G + IP+ I + + K Sbjct: 138 NVGAIFRSAAALNMEAVLLSPGCSDPLYRRASRVSMGTVFQIPWTFIRDSNEMRCKREVI 197 Query: 206 GFQTIG---------------LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + + +K +K+A+ILG EG+GL +T Sbjct: 198 WPKQAIAELKKLGYKTAALALTDDSVSIDDSELMKEEKLAVILGNEGEGLENETIALCDY 257 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M + +LNV+ A+AVA + K Sbjct: 258 TVKIPMTHGVDSLNVAAASAVAFW----QLGK 285 >gi|167973464|ref|ZP_02555741.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|167974681|ref|ZP_02556958.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|167976160|ref|ZP_02558437.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|167988658|ref|ZP_02570329.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|168363160|ref|ZP_02696330.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195867662|ref|ZP_03079664.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273649|ref|ZP_03206184.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554556|ref|YP_002284727.1| rRNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550441|ref|ZP_03771390.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551107|ref|ZP_03772053.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903015|gb|EDT49304.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184208931|gb|EDU05974.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018840|gb|EDU56880.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997857|gb|EDU66954.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659595|gb|EDX52975.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660719|gb|EDX53974.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249677|gb|EDY74458.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209542057|gb|ACI60286.1| rRNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378922|gb|EEH01287.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379595|gb|EEH01957.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 257 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 87/254 (34%), Gaps = 8/254 (3%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWD 84 + D + ++ + + G + AL N + ++ + + + Sbjct: 10 NEDIIHFYNLIHDKKYREANQLFIIEGFKLLDEALQNQQTIVAIIINERVYDKEFETIFK 69 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 L + V I K+ ++ + + +++LD++ DP Sbjct: 70 YTLYDNVQIYKVSENVIKKLSVNIDPSP-----ILAIVKMKEETCDVNDNVLLLDNIQDP 124 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G ILR+ AF+ +I + + S + S+ + + Sbjct: 125 GNLGTILRTCFAFNVKQVIFNNCVDLYNAKTIKASMGAIFKINFLRFNSSKLTLEFLLKN 184 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + + L + K L++G EG GL + A+ + M ++LN Sbjct: 185 NFYLIATILDKNAISLNELKIKQKYCLMVGNEGHGLSQNFIDYASIKTMIKMN-QTESLN 243 Query: 265 VSNAAAVALYITQN 278 V+ A A+ LY Sbjct: 244 VAVATAIFLYELNK 257 >gi|29833282|ref|NP_827916.1| rRNA methyltransferase [Streptomyces avermitilis MA-4680] gi|29610404|dbj|BAC74451.1| putative rRNA methyltransferase [Streptomyces avermitilis MA-4680] Length = 308 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 89/269 (33%), Gaps = 11/269 (4%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK---IFQLLATKNALA 79 + + +++ + + G V A + + + +L AT A Sbjct: 31 ISPRSPRVSAARRLAKRN-FRGKEQLFLAEGPQAVREAAAHRAADAATLVELFATAEAAE 89 Query: 80 RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137 R V I I + + +L+ V Sbjct: 90 RYADIIGEARDAGARVHLADEAVIADISTTVTPQGLVGICRFLDTPFEEILAARPRLVAV 149 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L HV DP N G +LR A A + ++ T + +++ G+L H+P + Sbjct: 150 LAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKSVRASVGSLFHLPVAVGVPVDQ 209 Query: 198 A----LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 A D L++ A + G E GL +T+ A ++ Sbjct: 210 AVAGLKDAGVRILAADGAGDDDLDDELDKGTMGGPTAWVFGNEAWGLPEETRALADAVVR 269 Query: 254 LHMPGIIKALNVSNAAAVALYITQN-HFA 281 + + G ++LN++ AAAV LY + A Sbjct: 270 VPIHGKAESLNLATAAAVCLYASARAQRA 298 >gi|194217234|ref|XP_001917920.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1 homolog [Equus caballus] Length = 355 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 57/277 (20%), Positives = 107/277 (38%), Gaps = 28/277 (10%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-----LARLDWDAN 86 +++ + S+ L+G+ AL R++ +LL A Sbjct: 35 RLRLDDLAPTVRSETGLELLFGLSPCLLALQAARRRVARLLLQAGRSGLQGERAELLRAA 94 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALET-------APLLSPTLDAVRNSQLLMVLD 139 PV + +D + + VHQG+ +E QL ++L+ Sbjct: 95 EAQDIPVLRPRRKQLDALCHYQ-VHQGVCMEVSPLRPLPWTESREARPGDDPQQLWLILE 153 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI------- 192 + DP N+GA+LRSA D +IT++R S + V++K+++GA+E + Sbjct: 154 GLQDPRNLGAVLRSAYFLGVDKVITSRRNSCPLTPVVSKASAGAVEVMDVFSTDDLAGFL 213 Query: 193 ----SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + G +T S + + + L+LG EG GL + Q + Sbjct: 214 QVKARQGWLVAGTVGCPGPETSLSSEMPITSCLEFVWDQPTLLVLGNEGSGLSQEVQASC 273 Query: 249 TSMAHL-H---MPGIIKALNVSNAAAVALYITQNHFA 281 + + +P +++LNVS A + L+ + Sbjct: 274 QVLLTILPGRQLPPGLESLNVSVATGILLHSICSQRK 310 >gi|317124938|ref|YP_004099050.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum DSM 43043] gi|315589026|gb|ADU48323.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum DSM 43043] Length = 251 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 56/241 (23%), Positives = 107/241 (44%), Gaps = 7/241 (2%) Query: 46 PENLF-LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTI 101 + +YG + V L +P + +++ +A + V++ P + + Sbjct: 8 KDRFITVYGRNPVHEVLLDPDLHVDKVVIADSARGSGLTEIRRAAGRRGITVQSAPAERV 67 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 K+ G QG+ + L+ + + ++VLD + P N+G ILRSA A Sbjct: 68 KKLAGNGRQDQGVFADVVAPRMLPLEVAIDHADLRTVLVLDGITTPANVGMILRSATAAG 127 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 DGI+ +R S ++ K+++G P ++ +A+ + GF +GL +D Sbjct: 128 IDGIVVPRRGVASIDPLVVKASAGIAFRAPILKTFTAVEAVTALKEAGFHIVGLDADGDD 187 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L +++A++LG+E G P+ + + M G +++LNVS AAAV + Sbjct: 188 DLFTAHLRERVAVVLGSETAGHGPEVARLVDTWVSIPMTGGVESLNVSAAAAVVCFELVR 247 Query: 279 H 279 Sbjct: 248 R 248 >gi|15639103|ref|NP_218549.1| rRNA methylase, putative [Treponema pallidum subsp. pallidum str. Nichols] gi|189025343|ref|YP_001933115.1| rRNA methylase [Treponema pallidum subsp. pallidum SS14] gi|3322373|gb|AAC65100.1| rRNA methylase, putative [Treponema pallidum subsp. pallidum str. Nichols] gi|189017918|gb|ACD70536.1| possible rRNA methylase [Treponema pallidum subsp. pallidum SS14] gi|291059527|gb|ADD72262.1| RNA methyltransferase, TrmH family, group 3 [Treponema pallidum subsp. pallidum str. Chicago] Length = 292 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 94/275 (34%), Gaps = 47/275 (17%) Query: 50 FLYGVHTVSAALNNPS--------------------RKIFQLLATKNALARLDWDANLPH 89 + G+ + L R + A +NA + Sbjct: 2 VISGLRAIEEFLRAQPAALEGLHAGGKNSKTQQSCVRVLTLYYAAENARIKRLLGMAAAR 61 Query: 90 PFPVKTVP------------------PQTIDKIVGKEAVHQGL-----ALETAPLLSPTL 126 + + + A QG TL Sbjct: 62 GIRITHTTCAVLDKLARSLPPALRDHRGILAVLSSPSATPQGSHTRKKRPAVDSSQERTL 121 Query: 127 DA---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 L++VLD + DPHN+GAI+RSA FS D ++ + + + + ++GA Sbjct: 122 LHALATHTHALVLVLDAITDPHNVGAIVRSADQFSVDAVLLPHHHGAGGTETITRVSAGA 181 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + +P +R+ NL + GF G + + K AL+LG EG G+ P Sbjct: 182 VAWVPLVRVRNLVRTAGILKRSGFWLYGADVAGEAIGART-FPPKTALVLGNEGHGVSPL 240 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ + G + +LNVS AA + LY + Sbjct: 241 LRTHCDALISIPTQGNVDSLNVSVAAGILLYEIRR 275 >gi|159038777|ref|YP_001538030.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205] gi|157917612|gb|ABV99039.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205] Length = 307 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 96/280 (34%), Gaps = 23/280 (8%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 I+ ++I DY+ + ++R G + AL Sbjct: 43 QITDPDDDRI---------------ADYRALTDVELRTRWEPPHGLFIAEGELVLRRALR 87 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 L+ K R++ A+L PV P + ++ G LA Sbjct: 88 AGYPARSYLVDAK----RVEQLADLDTGDAPVYAAAPDVLRRVTGFHVHRGVLASFRRRR 143 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 D + ++ +++L+ VN+ N+G+I R+ D ++ + + + + Sbjct: 144 QPTATDLLATARRVVILEDVNNHTNLGSIFRAVAGLGVDAVLLSPTCADPLYRRSVRVSM 203 Query: 182 G---ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 G A+ + + ++ + + + AL+LGAEG Sbjct: 204 GEVFAVPYAMLGPWPDALAEVRAAGFTVLALTPAPDAVPIQRLEPGQRSRAALLLGAEGS 263 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 GL + E + + M + +LNV+ A AVA + Sbjct: 264 GLTREAMEASDVRVVIPMRRGVDSLNVAAATAVACWELGR 303 >gi|225022603|ref|ZP_03711795.1| hypothetical protein CORMATOL_02645 [Corynebacterium matruchotii ATCC 33806] gi|224944511|gb|EEG25720.1| hypothetical protein CORMATOL_02645 [Corynebacterium matruchotii ATCC 33806] Length = 266 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 92/255 (36%), Gaps = 7/255 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 K + ++ + + G ++V AA+ S + T A R Sbjct: 15 PRIVKAAKLH-RTAVRRKEGRFIVEGSNSVEAAVATGSATD--VFITAEAAKRFADIVVA 71 Query: 88 PHPFPVKTVPPQTID--KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V P + A+ L R+ +L+ V NDP Sbjct: 72 AGHMQVFVHPITAGAARSLADTATAPGIFAVCRPVLWRVGEALGRSPRLVTVAVGTNDPG 131 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--KMH 203 N G ++R + A D +I +S+ ++++G++ H+P R ++ + L+ K Sbjct: 132 NAGTLVRVSDALGADAVIFAGDTVDPQSSKAVRASAGSVFHVPVARSRDVGEVLRLLKGR 191 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + E+ A + G E GL P+ E A + + G ++L Sbjct: 192 GLQLMATAADGEVDLGTANELLARPTAWLFGNEAHGLGPELMELADHRVAIPIKGSAESL 251 Query: 264 NVSNAAAVALYITQN 278 N++ AA++ L+ + Sbjct: 252 NLATAASICLWESSK 266 >gi|103487534|ref|YP_617095.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256] gi|98977611|gb|ABF53762.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256] Length = 270 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 83/260 (31%), Gaps = 4/260 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K+M+ +K RH G+ + A + L A L Sbjct: 12 SNPLVKRMRLLREK-RHRRAEGLFLAEGLRIATEAREAGVFPAWLFLGPDGAAHPLAQAL 70 Query: 86 NL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 V + K+ GK+ + + P + + + +V + + Sbjct: 71 VADTMAAGGEVIDTTAAILSKLSGKDNPQTIVGIYAEPATTLAAIDRNAAPIWLVAERLR 130 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G +LR+ A G+I + +++ GA+ ++ Sbjct: 131 DPGNLGTMLRTGDAVGAGGLILLGDSTDPYGVEAVRASMGAIFTQRLVQARWDAFLPWLR 190 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G D + +++G E +GL A + M G + Sbjct: 191 SGQGELVATWLGDDSVDYQAVRYAAPTFILVGNESQGLPADYAAAADVRVKMPMLGKADS 250 Query: 263 LNVSNAAAVALYITQNHFAK 282 LN + AAAV Y N + Sbjct: 251 LNAAVAAAVMAYEVLNQRRR 270 >gi|260598962|ref|YP_003211533.1| putative methyltransferase [Cronobacter turicensis z3032] gi|260218139|emb|CBA32949.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Cronobacter turicensis z3032] Length = 257 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 13 RRQRAEETRVYGENACQALFQSRPESIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDA 72 Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ L + ++ L+ V +PHN+GAI+RS Sbjct: 73 ELTKASGTE-HHGGVCFLIKKRSGASVEQWLSKAGDEDCVLALEDVGNPHNLGAIVRSCA 131 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + S ES ++A G EH+ I + +DAL + + G+ + SS Sbjct: 132 HFGVKGVVV-QDASLLESGAAVRTAEGGAEHVEPITGDSFSDALAQFRAAGYAIVTTSSH 190 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 PL + K+ L+LG E +G+ TQ A + G +++LNVS A V L Sbjct: 191 KGTPLFKATLPKKMVLVLGQESEGISEATQANADLSLSIDGTGNVESLNVSVATGVLLAE 250 Query: 276 TQNH 279 Sbjct: 251 WWRQ 254 >gi|283458109|ref|YP_003362724.1| rRNA methylase [Rothia mucilaginosa DY-18] gi|283134139|dbj|BAI64904.1| rRNA methylase [Rothia mucilaginosa DY-18] Length = 292 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 4/253 (1%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 R Y ++ +S Q + AL + + L ++ L Sbjct: 38 RYYTQLTDVKLRSAMEPQWGIYIAESSKVIRRALVAGHQPV-SFLMSEKWADDLADVLRA 96 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P + ++++ G LA P P ++ + + +L+ + D N+ Sbjct: 97 HPDTPAYVGSEEQLEQVTGFHLHRGALAAMARPEPQPLEQLLQGASRVAILEDIVDHTNV 156 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RSA A + D ++ T R + + + G + +P+ R+ + LQ +H GF Sbjct: 157 GAIFRSAAALNVDAVLVTPRCADPLYRRSIRVSMGTVFQVPWARLESWPADLQTLHELGF 216 Query: 208 QTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ L+ + +++K+ALILG EG GL P+T + M + +LN Sbjct: 217 KSAALALEEDSLTLEELSARRDEKLALILGTEGHGLSPRTLAACDDTVMIPMSHGVDSLN 276 Query: 265 VSNAAAVALYITQ 277 V+ A+AVA + T+ Sbjct: 277 VAAASAVAFWETR 289 >gi|187918381|ref|YP_001883944.1| 23S rRNA methyltransferase [Borrelia hermsii DAH] gi|119861229|gb|AAX17024.1| 23S rRNA methyltransferase [Borrelia hermsii DAH] Length = 244 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 106/239 (44%), Gaps = 15/239 (6%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE------ 108 +++ ++ N +L +K + L ++ + + KI+G Sbjct: 7 NSIIESIKNNKG--LRLYISK-TSPKSINIEKLAKEHKIQIIKVNDLAKIIGNNDHRGFA 63 Query: 109 ------AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + + +N+ +++LD + DP N GAILR++ F+ D + Sbjct: 64 LKLKTLKSNNTKKQDKNLEEFLEEFQHQNNVFILILDGIEDPQNFGAILRTSEQFNIDLV 123 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 IT++R S ++A + +++SGA +++ + + N+ + ++ + GF K Sbjct: 124 ITSQRRSAKDNATILRTSSGASQYVNKLVVPNINNVIKYLKKNGFWIYASDIKGKAINTT 183 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 I + KIALI+G EGKG+ +E + + + G I +LNVS + + ++ + Sbjct: 184 PINDTKIALIMGNEGKGIHKLIKENSDFLVRIPTKGKIDSLNVSVSTGILIFEIKRQLN 242 >gi|47213835|emb|CAG00639.1| unnamed protein product [Tetraodon nigroviridis] Length = 364 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 114/299 (38%), Gaps = 26/299 (8%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSR-HTSQPENLFLYGVHTVSAALNNPSR 66 + +K S KL +K Q QK++ + + ++G+ AL+ R Sbjct: 67 QKKKNGSKVSLELRKLSLEDSPREKWQQLRQKTKVDSRSDSHEIVFGIAPCLLALSQGRR 126 Query: 67 KIFQLLATKNALARLDW-----DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 K F+L A + + V +DK+ VHQG+ L+ + L Sbjct: 127 KAFKLFVKDGEAAERASVLKVCEEAHSRGVQICHVRKNDLDKMS-LGRVHQGVCLQASRL 185 Query: 122 LSPTLDAVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 T L +VL+ + DP N+GAILRSA D + ++ S S Sbjct: 186 DFLTKTTCNSRGSKDSNRPPLWLVLEEIQDPMNLGAILRSAYFLGVDRVASSVHRSCPLS 245 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ-------TIGLSSDSKKPLEQEIKN 226 V++K++SG +E + +L D L+ + G+Q + Sbjct: 246 PVVSKASSGVMEVMEVYGYESLEDMLRMKVAQGWQVVGSVGTEAEATHIPIIRCSDFHLT 305 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVALYITQNHFA 281 L++G EG+GL ++ + + I++LNVS AA + L+ Sbjct: 306 KPTLLLMGGEGEGLSRGLLSLCQALLSIPAGRNLFPGIESLNVSVAAGIILHSMLQSRK 364 >gi|213962822|ref|ZP_03391082.1| tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno] gi|213954479|gb|EEB65801.1| tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno] Length = 242 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 91/246 (36%), Gaps = 21/246 (8%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +Q QK ++ ++ + G ++ L R +LL A + Sbjct: 8 KLIQKLQQK-KYRNELNLFIVEGKKSIVEFLQAGYR--LELLIATEVF------AEVLSH 58 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 P+ V + + K+ + +GLA+ L +++ LD+V DP N+G + Sbjct: 59 HPITLVSKEELRKVSALKNPDEGLAIFHQRKHKGIL----QEGIILALDNVQDPGNLGTL 114 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R F + ++ + + + ++ G+L + + + + Sbjct: 115 IRLCDWFGIETLLCNTQTVDCYNPKVVQATMGSLTRVAVHYVDL-----AGFLATCSLPV 169 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSN 267 + + L + LILG E G+ P+ + A + ++LNV+ Sbjct: 170 YVMDLEGENLYTTEFPEDCVLILGNEANGITPEVRSLANKAITIPRFSKHQQTESLNVAM 229 Query: 268 AAAVAL 273 A A+ L Sbjct: 230 AGAIVL 235 >gi|260753219|ref|YP_003226112.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552582|gb|ACV75528.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 249 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 95/236 (40%), Positives = 136/236 (57%), Gaps = 11/236 (4%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 +++ + + G H V AALNNP R I ++ AT+ ALA + D PV Sbjct: 3 RSRNKASPSHPRFW--GRHAVEAALNNPERHIRRIWATREALAPYNID----KSIPVTLS 56 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAIL 151 + + V +A HQG+ +E PL L + + L+VLD V DPHN+GAIL Sbjct: 57 DVADLGRFVPNDAPHQGIVIEVDPLPDIWLSDLLDLPETDKRPLLVLDQVTDPHNVGAIL 116 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA AF GIIT R++P ES LA++ASGALE +P++R++NL AL ++ G+ IG Sbjct: 117 RSAAAFDALGIITQDRHAPPESGALARAASGALEVVPWVRVTNLARALDEIAEAGYWRIG 176 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L+ S+ L Q + + K AL+LGAEG+GLR T+ +A L + I++LNVSN Sbjct: 177 LTGHSEATLSQTLGSGKTALVLGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232 >gi|296187098|ref|ZP_06855496.1| RNA methyltransferase, TrmH family [Clostridium carboxidivorans P7] gi|296048292|gb|EFG87728.1| RNA methyltransferase, TrmH family [Clostridium carboxidivorans P7] Length = 213 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 5/212 (2%) Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 IF + K+ D + L + V Q + + E A+ + L+ Sbjct: 4 IFVSESHKSRFQSFDIKSKLQKSTKIYWVSEQVLKLLSDTETPQGITAVV----DNKELN 59 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 +++D V DP N+G I+R+A A G+I TK + +S G++ H+ Sbjct: 60 VENKEGFYVLVDKVQDPGNMGTIIRTAHASKALGVIITKGTVDIYNEKTLRSTMGSIFHV 119 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P I+ ++L + + + GF + S ++ K K + +G EG G+ + Sbjct: 120 PVIQDNDL-NKVNFLKEKGFNLVASSLNTDKNFYDVDLKGKKIIAVGNEGSGISDEIYNM 178 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + MPG ++LNVS AA V ++ Sbjct: 179 ADIKVKIPMPGGAESLNVSVAAGVMMFEVIRQ 210 >gi|256394616|ref|YP_003116180.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM 44928] gi|256360842|gb|ACU74339.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM 44928] Length = 272 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 88/247 (35%), Gaps = 9/247 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQ 99 ++ G V A + + +L AT A R + P+ Sbjct: 27 FRAKQRLFLAEGPQAVREAADLDGVLV-ELFATGEAAERYGEILAAAGKQGSKITIATPE 85 Query: 100 TIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + + + + + + A R +L+ +L HV DP N G ++R A A Sbjct: 86 LLASLSETVTPQGLIGVCRFLDVPLESFLAARAPKLVALLAHVRDPGNAGTVIRCADAAG 145 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D +I T + ++++G+L H+P + +A+ + + + + Sbjct: 146 ADLVIVTSESVDVYNPKAVRASAGSLFHVPVAVGVSAQEAVDMLRAAELRVLAADGGGAA 205 Query: 219 PLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L+ E + G E GL A + + G ++LN++ AAAV LY Sbjct: 206 DLDDELDAGRLAAPTCWMFGNEAWGLPEALLALADEAVRVPIHGRAESLNLATAAAVCLY 265 Query: 275 ITQN-HF 280 + Sbjct: 266 SSARAQR 272 >gi|303232390|ref|ZP_07319082.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae PB189-T1-4] gi|302481474|gb|EFL44542.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae PB189-T1-4] Length = 390 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 54/253 (21%), Positives = 107/253 (42%), Gaps = 15/253 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 + + + ++ G + AL P ++ ++ R A + P + V Sbjct: 106 RKSRAGAQVHYIEGRRACNEALSLAMPLKRALIQKDVQSPDIRAFEQACIARDIPCEYVS 165 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------------RNSQLLMVLDHVNDPH 145 +D A HQG+ L T P V QL++VLDHV D Sbjct: 166 KAALDAASSHGA-HQGVMLVTKPFTYTEFADVLRTIDERAAATSALPQLVVVLDHVVDEG 224 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA +RSA +I + K+++GA+ +P ++++N+ A+ ++ + Sbjct: 225 NLGACVRSAEIVGATAVIIANARAAQVGVGAYKTSAGAVLRVPIVQVANVARAVLELKNH 284 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF + + +++ + + L++G+E +G+ +++ L G+I++LNV Sbjct: 285 GFWAMAATEHAERAVWSSPTAGNVCLVMGSEQQGISALVRKSCDFECKLPQRGVIESLNV 344 Query: 266 SNAAAVALYITQN 278 + AA V Y Sbjct: 345 AQAATVMCYEWLR 357 >gi|196006710|ref|XP_002113221.1| hypothetical protein TRIADDRAFT_37807 [Trichoplax adhaerens] gi|190583625|gb|EDV23695.1| hypothetical protein TRIADDRAFT_37807 [Trichoplax adhaerens] Length = 267 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 95/262 (36%), Gaps = 25/262 (9%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATK-------NALARLDWDANLPHPFPVKTVPP 98 + +YG+ AL RKI+ + N V Sbjct: 5 EDREIIYGIAPCQLALKADRRKIYHIYVRDPAGTLKPNKSIEHIIFKARKLGIHVLPSDK 64 Query: 99 QTIDKIV---GKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAIL 151 + +DK+ + V L+ LD + L + L+ V DP N+GA++ Sbjct: 65 RYLDKLTEGRPHQGVAMKATPLRPNLIRHDLDKTAMANNRKALWLGLNDVQDPMNLGALI 124 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF---- 207 R+A + ++ R + SAV++K+++GA+E P + NL+ L + + Sbjct: 125 RTAALMGVNRVVVNSRKTARLSAVVSKASAGAMEVYPIYAVKNLSKYLDYLVENDWNIIG 184 Query: 208 ---QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM----PGII 260 + L+LG EG G+ +E S + P I Sbjct: 185 TVGHKEVNQYQAMSCQNFNHNGKPTILMLGNEGFGISASIKEKCNSFLTIPTSSSCPPDI 244 Query: 261 KALNVSNAAAVALYITQNHFAK 282 +LNVS AA + LY + + Sbjct: 245 DSLNVSVAAGILLYSLRGRLNR 266 >gi|146312707|ref|YP_001177781.1| putative methyltransferase [Enterobacter sp. 638] gi|145319583|gb|ABP61730.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter sp. 638] Length = 365 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 96/244 (39%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V + Sbjct: 121 RRQRAEETRVYGENACQALFQSRPECIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDE 180 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L+ V +PHN+GA++RS Sbjct: 181 ELTKASGTE-HHGGVCFLIKKRNGTTVKQWVSQADADDCVLALEDVGNPHNLGAMMRSCA 239 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I ++ DA+++ G+ + SS Sbjct: 240 HFGVKGVLL-QDAAIVESGAAIRTAEGGAEHVQPITGESVLDAIEEFRKAGYSIVTTSSH 298 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + PL Q K+ L+LG E GL TA + G +++LNVS A V L Sbjct: 299 TGTPLFQATLPRKMVLVLGQERDGLSDAALSTADLSVSIEGTGKVESLNVSVATGVLLAE 358 Query: 276 TQNH 279 Sbjct: 359 WWRQ 362 >gi|301108904|ref|XP_002903533.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4] gi|262097257|gb|EEY55309.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4] Length = 326 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 87/239 (36%), Gaps = 10/239 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 +YG+H+V AL + R L + V+ + + Sbjct: 88 VYGIHSVLQALESGHRDTHALYVREERAPMDGQRPKKKSAADVRALERIHDLAGSKGVEI 147 Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 H + S +++VLD ++DP N GAILRSA C ++ + R + Sbjct: 148 HSTSKWMLNHITGDKPHQSNRSPVILVLDEIHDPQNFGAILRSAHFLGCSAVVVSDRNTA 207 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--- 227 S +++++ GALE + L +M + + Sbjct: 208 PLSPAVSRASVGALEVMVANDKLMKARNLHEMLAVSGDFGWRVVGASSGPNSVTSTKLSD 267 Query: 228 --KIALILGAEGKGLRPKTQETATSMAHLHMPG-----IIKALNVSNAAAVALYITQNH 279 L++G E +GLR ++ + + + +LNVS A+A+ LY +H Sbjct: 268 GQPTILVMGNEHRGLRKHIRQCCQDVVIIPGQATDEDTRVDSLNVSVASAILLYELLHH 326 >gi|313906489|ref|ZP_07839823.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6] gi|313468679|gb|EFR64047.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6] Length = 263 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 91/243 (37%), Gaps = 11/243 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA---ALNNPSRKIFQLLATKNALARLD 82 +++ K++ N K++ + G+ AL R + ++ R Sbjct: 6 SNQQIKRVIQLNAKAKSRREEGCFVAEGIKLFRETPAALR--DRVFVEASFAEDDQHREI 63 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLD 139 + F V V + +K+ QG+ + + + L++VL+ Sbjct: 64 MEEVRKGSFEV--VEDRVFEKMCD-TRTPQGILTIARMPEYRAEELLGSEGHVPLILVLE 120 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N+G I+R+A GI + + + + +S G++ +P+IR +L L Sbjct: 121 DLQDPGNLGTIIRTAEGAGVTGIFMSNKTADPFQPKVIRSTMGSIYRVPFIREEDLCARL 180 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + + QE A ++G EG GL + A + + M G Sbjct: 181 DWLREREVYAYAAHLKGENSYNQEDYRKGTAFLIGNEGNGLSDQLAGKAAHLIRIPMEGQ 240 Query: 260 IKA 262 +++ Sbjct: 241 VES 243 >gi|269123132|ref|YP_003305709.1| RNA methyltransferase, TrmH family, group 3 [Streptobacillus moniliformis DSM 12112] gi|268314458|gb|ACZ00832.1| RNA methyltransferase, TrmH family, group 3 [Streptobacillus moniliformis DSM 12112] Length = 232 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 57/228 (25%), Positives = 107/228 (46%), Gaps = 3/228 (1%) Query: 53 GVHTVSAALNNP--SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 G++ V L + K+ + + + + D G A Sbjct: 6 GINPVIEILKSQTTIEKLEIYKGINKGHIKQLLELASKRNLKIFYTDKRD-DNSQGVVAY 64 Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 + +++ +++LD + DP N GAI+RS F GII R + Sbjct: 65 ISEYDYYIDFSAFLEKELMKDESTIVILDQIQDPRNFGAIIRSCECFGVSGIIMQDRNNV 124 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + + KS++GA+EH+ ++++N+ D+++K+ +G+ G ++ +K +E K A Sbjct: 125 KVTETVVKSSTGAIEHVDIVQVTNIADSIEKLQKYGYFVYGAEANGEKFYYEEKYPKKKA 184 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+LG+EGKG+R + +E+ S+ +H+ G I +LNVS AA + L Sbjct: 185 LVLGSEGKGMRKRVRESCDSILKIHLKGEINSLNVSVAAGILLSEMSK 232 >gi|308812149|ref|XP_003083382.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri] gi|116055262|emb|CAL57658.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri] Length = 320 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 57/283 (20%), Positives = 105/283 (37%), Gaps = 25/283 (8%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHTSQPEN----------LFLYGVHTVSAALNNPSRKI 68 A+ + + + + + +YG + V AL R + Sbjct: 32 RRAREVAEDARRRGTATRYDRRAIRRERGDGPTIAEGLIGEMVYGTNPVLEALRQNRRTL 91 Query: 69 FQLLAT---KNALARLDWDANLPHPFPVKTVPPQTID-KIVGKEAVHQGLALETAPLLSP 124 F L L V+ D + HQG+ L+ L P Sbjct: 92 FALYVQTGEGGGGHGTSEILRLAKELKVEVKSASKHDLNMACDNKPHQGVLLDAEALEIP 151 Query: 125 TLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 T++ + + + LD V DP N+GA+LRSA DGI+ + S +A ++K Sbjct: 152 TVEELPRWNGVGSPPVWLALDEVVDPQNLGAMLRSAHFLGVDGIVVCTKNSAPFNATVSK 211 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEG 237 +++GA+E R + L + G+ +G ++D + + L++G EG Sbjct: 212 ASAGAMEAQVVHRTGVMHRFLARARDDGWDVVGAAADPRAENIHAFEVAAPTVLVVGNEG 271 Query: 238 KGLRPKTQETATSMAHLHM----PGIIKALNVSNAAAVALYIT 276 G+R + + + + +LNVS AA + ++ Sbjct: 272 VGIRTNVRRACNRLVSIPRGVSATDGVDSLNVSVAAGILIHAL 314 >gi|110638315|ref|YP_678524.1| tRNA and rRNA methylase [Cytophaga hutchinsonii ATCC 33406] gi|110280996|gb|ABG59182.1| tRNA and rRNA methylase [Cytophaga hutchinsonii ATCC 33406] Length = 249 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 86/245 (35%), Gaps = 10/245 (4%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K +S K + + G +V L + KI +LL T A+ Sbjct: 6 TVKFTKSLQNK-KFRRLYNQFIIEGEKSVLEVL-SSDFKIQKLLVTSYFHAKYKELLAPF 63 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 ++ +D I ++ A+ + L + ++ LD++NDP N+G Sbjct: 64 SGI-IELAGDTELDSIGSLQSN--DAAIAVCAVNEVLLPETIKGEWVIALDNINDPGNLG 120 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A + II ++ + + + ++ G+ + Sbjct: 121 TIIRIADWYGISKIICSEDTADFYNPKVINASKGSFLRVKVHYTDL-----SAFLKQQRV 175 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 ++ + + + + L++G E G+ + T M + G ++LNV A Sbjct: 176 SVYGADLHGENIHTASFKEVGILVMGNEAHGISEGVKACITQMLTIPRFGQAESLNVGIA 235 Query: 269 AAVAL 273 A+ Sbjct: 236 TAICC 240 >gi|194476573|ref|YP_002048752.1| tRNA/rRNA methyltransferase (SpoU) [Paulinella chromatophora] gi|171191580|gb|ACB42542.1| tRNA/rRNA methyltransferase (SpoU) [Paulinella chromatophora] Length = 268 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 54/283 (19%), Positives = 90/283 (31%), Gaps = 28/283 (9%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 LIS +++ + +K H A +++ L G H + Sbjct: 2 LISSRRNPLVNRIKSLHEAV-------------------GRRATDSILLEGTHLFQEIVR 42 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 + + + NLP +K V + + I Q + Sbjct: 43 LGLVPNEIVATPQWIQTNNNLIINLPKNNLLKLVTIEVLRAIS---TTKQPDGVIAILPK 99 Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L+VLDH+ DP N+G ++R+A+A D + + P + VL SA Sbjct: 100 GQLPLGPIIPNFLLVLDHLQDPGNLGTLMRTALAAGVDYVWLLEGADPWQPKVLRASAGA 159 Query: 183 A------LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 + + NL + +P Q L LG E Sbjct: 160 TLALPLKRFLEKKLLLQNLQILKGMQRVATRVNKHEVTPFIQPYWQLNWCKPTILFLGNE 219 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 G GL P + T + ++++LNV AAA L Sbjct: 220 GSGLDPGLEAVCTDAVTIPHTSLVESLNVGVAAAPLLLERIRQ 262 >gi|317055279|ref|YP_004103746.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7] gi|315447548|gb|ADU21112.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7] Length = 269 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 81/238 (34%), Gaps = 6/238 (2%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + AL+ + L+ + + PV + + ++K Sbjct: 27 KNRGLFVAESPKVIRTALDAGYEAVSLLMDERYISGQAADIVERVGDVPVYSAGKKLLEK 86 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 I G + L L + VL+ + + N+GAI RSA A D ++ Sbjct: 87 ITGFKLTQGVLCAMKRKSEDTAL--PAEVHRVAVLEDIMNQTNMGAIFRSAAALGVDAVL 144 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ----TIGLSSDSKKP 219 T S + + G + +P+ I + Sbjct: 145 LTDGCSDPLFRRTIRVSMGTVFQVPWKFIGKSDSGYIYRLKKEGFLTAAMALRADTVSIE 204 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 E + +K+A++LG EG GL+ T E + M + +LNV+ A AVA + + Sbjct: 205 DEGLKRAEKLAIVLGTEGDGLKASTIEDCDMTIKIPMAHGVDSLNVAAAGAVAFWEMR 262 >gi|114570367|ref|YP_757047.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10] gi|114340829|gb|ABI66109.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10] Length = 289 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 78/270 (28%), Positives = 130/270 (48%), Gaps = 17/270 (6%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 K S++ + + K + + S K T +++G H V AA+ N R Sbjct: 6 KSSDRPKTGARTIVTKTPMRNTSKRPDYSRRSKPAGTGDSG--WIWGRHAVLAAVANKRR 63 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 +I +L T+NA +LP + V P+ ID + + AVHQG A L S ++ Sbjct: 64 EILELKVTRNAAR------DLPDGTDHQQVEPKVIDNALPEGAVHQGFAARARALPSESV 117 Query: 127 D--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + L+VLD + DPHN+GA+LRSA AF +I R +P + KSA GA Sbjct: 118 NGVIDPTHGALLVLDQITDPHNVGAVLRSAAAFGIRAVIMQDRKAPPLFGTVCKSAVGAA 177 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-------LEQEIKNDKIALILGAEG 237 E + ++R++N+ D L + G +GL+ +++ + + + L++G+E Sbjct: 178 ERVAHVRVTNIADTLLEFSKAGRHVLGLAGEAELDLATALAAPDGKGWGPGLVLVMGSED 237 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSN 267 KGLR + E + + M +++LNVSN Sbjct: 238 KGLRQRVAECCDQLVRIPMTDTVESLNVSN 267 >gi|227497644|ref|ZP_03927862.1| RNA methyltransferase [Actinomyces urogenitalis DSM 15434] gi|226832915|gb|EEH65298.1| RNA methyltransferase [Actinomyces urogenitalis DSM 15434] Length = 306 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 52/274 (18%), Positives = 100/274 (36%), Gaps = 19/274 (6%) Query: 26 NHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++ ++ + ++ E + G V A+++ I L AT++A AR Sbjct: 16 DNPSSARVSRVAALARRSTRTKYERFLVEGPQGVREAVHHACGDILDLYATQDASARYPE 75 Query: 84 DANLPHPFPVKT--VPPQTIDKIVGKE------------AVHQGLALETAPLLSPTLDAV 129 + V T V P + + A AP ++ + Sbjct: 76 ILSEARAAGVYTHLVTPAVMAAMSADAQGLLAVVRTQAVARPSAAGGSRAPQVAELKQVL 135 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +++L+ VL DP N G I+R+A A D ++ + + + +S +G+L H+P Sbjct: 136 DSARLVAVLTQAQDPGNAGTIIRAADAAGADAVVLARGSVDPTNPKVVRSTAGSLFHLPV 195 Query: 190 IRIS--NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + + + A LG E GL P++ Sbjct: 196 LWGLGLEEISQAVHGAGLAILAADGRGELNLFESETLLARPTAWWLGNEAHGLSPESLTQ 255 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN-HF 280 A ++ + + G ++LNV+ AAAV Y + Sbjct: 256 ADAVVSIPLYGQAESLNVATAAAVCFYASARVQR 289 >gi|314933335|ref|ZP_07840700.1| RNA methyltransferase, TrmH family [Staphylococcus caprae C87] gi|313653485|gb|EFS17242.1| RNA methyltransferase, TrmH family [Staphylococcus caprae C87] Length = 246 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 100/277 (36%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ KI + + R + + G+H + A Sbjct: 1 MEQITSAQNNKIKNANKLKKKRDR-------------------DKTGLALIEGIHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + D + + + + G QG Sbjct: 42 YQSGIEITQLFVIEPDRTDEALLDYANEA----YEINMKVAEALSG-TVTPQGFFAVIEK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 ++A++ ++++D + DP N+G ++R+A A D I+ K + + +++ Sbjct: 97 PQYNEIEALQ----VLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTADPYQDKVMRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ HIP + T + + + K+ Q AL+LG EG+G+ Sbjct: 153 QGSIFHIPVVIKDLATYITEFEGPVYGTALENAVSFKEIESQSQF----ALLLGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + T + + G ++LNV+ A ++ LY + Sbjct: 209 NKDLLQRTTKNLIIPIYGKAESLNVAIAGSILLYQLK 245 >gi|183984618|ref|YP_001852909.1| rRNA methyltransferase [Mycobacterium marinum M] gi|183177944|gb|ACC43054.1| rRNA methyltransferase [Mycobacterium marinum M] Length = 279 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 99/254 (38%), Gaps = 6/254 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ S + GV V L + LL T L L D Sbjct: 25 DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMLASRFSP-RALLGTDRRLLELKDDLA-G 82 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P V P + ++VG LA + + V ++ + VL+ VND N+G Sbjct: 83 VGVPYYRVSPDVMAQVVGFHLNRGVLAAASRVVEPSVGQVVDGARTIAVLEGVNDHENLG 142 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +I R+A D +I + + + G +PY R ++ L + GF+ Sbjct: 143 SIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELVALKERGFR 202 Query: 209 TIGLSSDSK----KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ + + +AL++GAEG GL + + M +LN Sbjct: 203 LLALTPKGDARALPEAMDAVGDQPVALLVGAEGPGLTAAALRISDLRVRIPMSRGTDSLN 262 Query: 265 VSNAAAVALYITQN 278 V+ AAA+A Y Sbjct: 263 VATAAALAFYERAR 276 >gi|110598736|ref|ZP_01386998.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM 13031] gi|110339639|gb|EAT58152.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM 13031] Length = 266 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 111/264 (42%), Gaps = 9/264 (3%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLA 73 +K L + +K +QK + + G+ TV+ N P + L Sbjct: 1 MKQQEREPLSKE--KLRKYTRLHQK-KQREREGLFLAEGLRTVTELCRNLPDNDMLVALL 57 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNS 132 + + A+ V ++ + ++ + + + + Sbjct: 58 IRETQSDDSGFAHAFSG-KVFSISDKECLQLAQTTTSQGVFGVFRQQPDPEPFGEGKKGA 116 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++VLD V DP N+G ILR+AV F DG+I + +A +S++G++ IP+ + Sbjct: 117 SFIVVLDDVQDPGNVGTILRTAVWFGADGVICSGGTVDRYNAKTVRSSAGSIYAIPHYGV 176 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 ++ D L ++ + G+ I S + K E + +K L++G E G+ + Q + + Sbjct: 177 EHVADELNRLKALGYCIISASLEGKDFREFSFRPEKQVLVIGNEANGVSEQVQTLSDRLV 236 Query: 253 HLHMPGI---IKALNVSNAAAVAL 273 + G +++LN S +AA+ + Sbjct: 237 RIPHAGKKARVESLNASVSAAILI 260 >gi|332883970|gb|EGK04250.1| hypothetical protein HMPREF9456_01278 [Dysgonomonas mossii DSM 22836] Length = 250 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 94/253 (37%), Gaps = 17/253 (6%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K ++S +K ++ ++ G VS L QLL A A++ + Sbjct: 9 KYIRSLKEK-KYRTEFGTFVAEGHKMVSDLL---PFIKCQLLV---ATPEFLKSADVANV 61 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 V V + + + + Q LA D + +L++ LD + DP N+G I Sbjct: 62 EEVIEVNDRELAQASFLQNPQQVLA--VFYQSENVTDIKIDDELVLALDGIQDPGNMGTI 119 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + I ++ + + ++ GAL + + H + Sbjct: 120 IRLADWYGIHHIFCSQDTVDVYNPKVVQATMGALARVNIHYTDLSDFLTRNKHLS----V 175 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVS 266 + + + ++ +++G EG G+RP+ + T ++ ++LNV+ Sbjct: 176 YGTFLDGENMYEKKITSHGIIVMGNEGNGIRPEIERLITEKLYIPNYPVGNPTSESLNVA 235 Query: 267 NAAAVALYITQNH 279 A A+ + Sbjct: 236 IATAIICAEFRRR 248 >gi|320354874|ref|YP_004196213.1| TrmH family RNA methyltransferase [Desulfobulbus propionicus DSM 2032] gi|320123376|gb|ADW18922.1| RNA methyltransferase, TrmH family, group 3 [Desulfobulbus propionicus DSM 2032] Length = 269 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 65/268 (24%), Positives = 110/268 (41%), Gaps = 17/268 (6%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALA 79 RR K + F +P L+G + V L +I Sbjct: 5 RRESTVTKPARPFAS-----DEPSEDLLWGFNAVWETLQQEGCGGISEILVQKGKAGPRL 59 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-------PTLDAVRNS 132 + D H V+ V + A LLS T + Sbjct: 60 QQIIDHAKSHAIAVRFVDGARMGVPKNCRHQGVVARQSEARLLSLEDLLAGITDEEQTTQ 119 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++VLD + DP N+G+ILRSA+A +I T+ S + +A++++GA+ H+ ++ Sbjct: 120 ARILVLDSLQDPRNVGSILRSALAAGFSRVILTRERSVPLTGTVARTSAGAVSHLRLCQV 179 Query: 193 SNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 NL DAL ++ GF G ++ + P+ + I L++G+EGKG+RP ++ + Sbjct: 180 VNLVDALNRLKEQGFWIFGAIAEANAAPIYTTDFSGPICLVIGSEGKGIRPLVRKQCDVL 239 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +LN S AAAV ++ Sbjct: 240 VTIPMQASFNSLNASVAAAVIMFEIARR 267 >gi|229083411|ref|ZP_04215759.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44] gi|228699844|gb|EEL52481.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44] Length = 232 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 107/226 (47%), Gaps = 12/226 (5%) Query: 65 SRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 R I ++ + A ++ + ++ P + +D++V E HQG+ + A Sbjct: 4 GRDINKIWIAEGAAKGQVQIVLALAKENKIILQHAPKKKLDQLV--EGNHQGVIAQVAAY 61 Query: 122 LSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L+ ++LD + DPHN+G+I+R+A A GII KR + +A Sbjct: 62 QYAELEDLFEAAAKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTA 121 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 +AK+++GA+E+IP R++NL+ + + G G + K N I L++G Sbjct: 122 AVAKASTGAIEYIPVARVTNLSRTIDDLKERGLWIAGTDARGKTDYRNLDGNMPIGLVIG 181 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +EGKG+ E + +L M G + +LN S AA++ +Y Sbjct: 182 SEGKGMSRIIGEKCDFLINLPMVGKVTSLNASVAASLLMYEVYRKR 227 >gi|297564710|ref|YP_003683682.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus silvanus DSM 9946] gi|296849159|gb|ADH62174.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus silvanus DSM 9946] Length = 237 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 112/236 (47%), Gaps = 13/236 (5%) Query: 50 FLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 +YG + V A+ +++ +N L R + +P +D+ V + Sbjct: 2 LIYGRNPVLEAIKEGRAVRVWVAKGVENWLIRELEGL----GADYELLPRIELDQKV-RT 56 Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 HQGL E A L + + LL++LD V DP N GAI+R+AVA G Sbjct: 57 TQHQGLVAEVAELKFSDPEAPFRLAKERQEGVLLVLLDGVTDPRNYGAIIRTAVALGAHG 116 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I+ +R S S ++ K+++G +P +++ NL ++++ G G S ++K L Sbjct: 117 VISEERRSAPLSPLVLKASAGTAHKLPLVQVKNLPRYMEEIKKRGVWIYGASGKAQKDLT 176 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A+++G+EG+G+R ++ A + + ++LN S A A+ LY + Sbjct: 177 MLDYKRPLAIVIGSEGEGMRRLVEQRCDETARIPLGPGAESLNASVALAIFLYQAR 232 >gi|319943811|ref|ZP_08018092.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599] gi|319743044|gb|EFV95450.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599] Length = 328 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 91/302 (30%), Gaps = 53/302 (17%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL----- 81 + + ++ + R + L G H + + L + + QL+ + +L Sbjct: 27 NPRLRHLRELLESGRERRRSGQTVLEGWHLLESWL-AGGQPVLQLVLPRRTFQQLGQGGE 85 Query: 82 -------------------------------------------DWDANLPHPFPVKTVPP 98 + Sbjct: 86 PSSPASRREHGRSPSANPWQRVSPQRQPGAPIPSGNVASMNGNPEMVAQAAQASWLVLDD 145 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 D++ + L P L A L++LD + DP N+G ILR+A A Sbjct: 146 WLFDQLDIMPSPS--PLLAVVETPRPALPASAPDHDLVILDRIQDPGNVGTILRTAAAAG 203 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 ++TT + + + ++ G H N+ K G + Sbjct: 204 IRTVLTTAGTAACWAPKVLRAGMGG--HFVLEIHENIPLEQLKAQVGALPLAGTVLQDGQ 261 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L +A + G EG+G+ P+ Q + +++LNV+ +AAV L+ + Sbjct: 262 SLYASDLRQPLAWVFGNEGEGIDPELQARLGCRLTIPQDPGVESLNVAASAAVCLFEQRR 321 Query: 279 HF 280 Sbjct: 322 QR 323 >gi|326693586|ref|ZP_08230591.1| tRNA/rRNA methyltransferase [Leuconostoc argentinum KCTC 3773] Length = 253 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 64/253 (25%), Positives = 120/253 (47%), Gaps = 13/253 (5%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKT 95 K + + F+YG + AAL +++I ++ ++ + ++ Sbjct: 2 KREQETPNQTEFVYGHYASVAALK-GTQEINKVWLQTGLQDKIRNEVTQLAKKRGLVIQQ 60 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIG 148 P +D++ HQG+ L A T+D + + ++LD + DPHN+G Sbjct: 61 APKSKLDELTD-GGNHQGVVLSVAAFTYATIDDLFARAEERQEAPFFLILDGIEDPHNLG 119 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +ILR+A A GII KR + +A +AK ++GA+E++P R++NL + + ++ G Sbjct: 120 SILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEYVPVARVTNLVNTVNELKDRGVW 179 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + + K AL++G EGKG+ P ++ M + M G +++LN S A Sbjct: 180 IFGTDMAGEDYRRWDAK-GATALVIGNEGKGISPLLKKKVDGMLTIPMVGHVQSLNASVA 238 Query: 269 AAVALYITQNHFA 281 A++ +Y + Sbjct: 239 ASLLIYQGFSSRN 251 >gi|163856832|ref|YP_001631130.1| putative RNA methyltransferase [Bordetella petrii DSM 12804] gi|163260560|emb|CAP42862.1| putative RNA methyltransferase [Bordetella petrii] Length = 258 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 90/256 (35%), Gaps = 7/256 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ +K++Q Q + +P L GVH A L + + + Sbjct: 6 SRDNPQFKQLQRLAQHAGRRGEPA--ILEGVHLCQAWLAEAGPPAWAVF--DAGRVQQPE 61 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 A L P + + E V G + R + ++ LD V D Sbjct: 62 LAALLAAVPPRQALLLESRLLRHLETVETGQGVLFVVDPPTPALPARLDEPMVWLDRVQD 121 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ILR A ++ + + + S + + GA + + D Sbjct: 122 PGNVGTILRVCAAAGIGRVLLSPGCAAAWSPKVLRGGQGAHF---ALALHEHADLQACAQ 178 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + L A + G EG+G+ P Q+ A + +++L Sbjct: 179 RLEIPLAATTLEGAQDLYATRLPPACAWVFGHEGQGVAPALQQAAALRVRIDHAPAVESL 238 Query: 264 NVSNAAAVALYITQNH 279 NV+ AAA+ L+ + Sbjct: 239 NVAVAAALCLFEQRRQ 254 >gi|312880239|ref|ZP_07740039.1| RNA methyltransferase, TrmH family, group 3 [Aminomonas paucivorans DSM 12260] gi|310783530|gb|EFQ23928.1| RNA methyltransferase, TrmH family, group 3 [Aminomonas paucivorans DSM 12260] Length = 261 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 11/245 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQT 100 + + LYG + V A L + R+ ++ K + D P++ + + Sbjct: 6 QKEQEDLLYGRNAVWALLESQPRRCLKVWLAKGTRDPFRSRILDRCREAGIPLQELDGKG 65 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRS 153 +++++ VHQG+A TA + L L++VLDH+ DPHN GAI+RS Sbjct: 66 LERML-PGKVHQGVAARTAGVELLELREVLARIPPAPEPVLVVVLDHLEDPHNAGAIVRS 124 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A A + R + + K+++GA +P RI N+ L+ + G +GL Sbjct: 125 AEAVGALAALLPLRRGALPTGAMVKASTGAALRLPLGRIGNVGQDLRLLQEAGLWVVGLE 184 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + ++ L + + ++AL++G+EGKGL T + + H+ M G +LN S AAA+ L Sbjct: 185 AQGERSLFETPLSPRMALVVGSEGKGLGRTTLQGCDEVLHIPMRGESGSLNGSVAAALGL 244 Query: 274 YITQN 278 Y Sbjct: 245 YEWFR 249 >gi|294678305|ref|YP_003578920.1| TrmH family RNA methyltransferase [Rhodobacter capsulatus SB 1003] gi|294477125|gb|ADE86513.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter capsulatus SB 1003] Length = 264 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 89/227 (39%), Positives = 130/227 (57%), Gaps = 10/227 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV--GK 107 +L+G+H V AL NP+R +L+ TKNA +L + V P+ D V G Sbjct: 23 WLFGLHAVRDALMNPARVKLRLVLTKNAADKLAEAIA-AGGLAPEIVDPRKFDAHVPLGP 81 Query: 108 EAVHQGLALETAPLLSPTLDAVRNS----QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + VHQG ALE PL L V + L+++LD V DPHN+GAILRSA F ++ Sbjct: 82 DQVHQGAALEVKPLDWGKLADVALTGAGLPLVVMLDRVTDPHNVGAILRSAEVFGARAVV 141 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ- 222 R+S E+ LAK+ASGALE PY+R++NL++A+ + G+ IGL+ +++ L + Sbjct: 142 APARHSAPETGALAKTASGALERQPYLRVTNLSEAMGALRDMGYVLIGLAGEAEMTLAEG 201 Query: 223 --EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 E+ +A++LGAEG GLR KT+ T + + G +LNVSN Sbjct: 202 LAEVGTRPVAIVLGAEGPGLREKTRATCDHLVRIPFAGAFGSLNVSN 248 >gi|227501361|ref|ZP_03931410.1| possible rRNA methyltransferase [Anaerococcus tetradius ATCC 35098] gi|227216460|gb|EEI81870.1| possible rRNA methyltransferase [Anaerococcus tetradius ATCC 35098] Length = 246 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 97/248 (39%), Gaps = 18/248 (7%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + +K + K ++ + + + V A+ + I + + Sbjct: 7 QNPKFKLINKLRNK-KYRDKEDLFVIESKKLVEEAIKSSLD-IEFIFIREG--------L 56 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 +L FP+ +K+ + G + + R +++LDH+NDP Sbjct: 57 DLACNFPLVVFDESLFNKLS-ELKSPDGFGAVVRKKKEEEISSNR----VLLLDHINDPG 111 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ++RSA AF + II T+ + +++ G++ + +++SN K Sbjct: 112 NMGTMIRSAEAFGFNDIILTEGCVDIYNEKSLRASMGSVFRLKLVKLSNDEIVNLKSRYK 171 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + D +K + I L +G E GL + S + M G I++LN Sbjct: 172 FLASHMEGCDVRKYDASL---ENIILAIGNEANGLSDFLRSLTDSFVKIAMQGKIESLNA 228 Query: 266 SNAAAVAL 273 + AA++ + Sbjct: 229 AIAASIMM 236 >gi|15618441|ref|NP_224726.1| rRNA methylase [Chlamydophila pneumoniae CWL029] gi|15836061|ref|NP_300585.1| rRNA methylase [Chlamydophila pneumoniae J138] gi|16752511|ref|NP_444773.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39] gi|33241882|ref|NP_876823.1| tRNA methylase [Chlamydophila pneumoniae TW-183] gi|4376820|gb|AAD18670.1| rRNA Methylase [Chlamydophila pneumoniae CWL029] gi|8163389|gb|AAF73643.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39] gi|8978901|dbj|BAA98736.1| rRNA methylase [Chlamydophila pneumoniae J138] gi|33236392|gb|AAP98480.1| tRNA methylase [Chlamydophila pneumoniae TW-183] Length = 265 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 81/260 (31%), Gaps = 7/260 (2%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 +++ K+ + K + + G + AL +T + ++ Sbjct: 6 KHNPLVKE--ALALKRSRCRKSSWFLVEGAREIQKALRTGYLCQHVFCSTHLSEKEKEFL 63 Query: 85 ANLPHP-FPVKTVPPQTIDKIV---GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 L + T+ ++ ++ + + ++++ Sbjct: 64 YELKRNSTKILYCLDSTLAQLSFKEHHDSFVAVIQKRVWNKEDFLIQRKNAQPFYLIIEQ 123 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V P N+GAILR A DG+I + + +S+ GA+ +P + IS Sbjct: 124 VEKPGNVGAILRIADGAGVDGVILCNPIVDLYNPNVVRSSLGAVFSLPILSISREEGKEL 183 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + AL+ G+E GL S L M G Sbjct: 184 FKQEGWTVFVTSPRAETMYFSKNYL-GPTALVFGSEKDGLTEDWFSEDFSEIALPMLGES 242 Query: 261 KALNVSNAAAVALYITQNHF 280 +LN++ + A Y Sbjct: 243 DSLNLATSVAAVAYEVVRQR 262 >gi|193211994|ref|YP_001997947.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327] gi|193085471|gb|ACF10747.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327] Length = 256 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 95/247 (38%), Gaps = 10/247 (4%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPH 89 ++ ++K ++ G+ TVS L++ + L+ + A +LD Sbjct: 4 RLAKLSRK-KYRDSEGLFLAEGLRTVSELLDSLPDLSMLHALVLDEAAAGQLDGLKRFAG 62 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 V ++ + ++ LD V DP N+G Sbjct: 63 --KVWLGDADAFKRLAQTASPQ--GVCAAFRKPEMGEFRPAERSFVVALDDVQDPGNVGT 118 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A F + +I + +A +S +G++ + I + +L L+++ + GF Sbjct: 119 IIRTAAWFGAEAVICGPGTADPWNAKTVRSTAGSIFALRIIDVPDLAAELKRLQAAGFTV 178 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVS 266 + D + D+ AL++G E G+ K A S + G +++LN S Sbjct: 179 AAAALDGQDYRSFGEWPDRRALVIGNEANGISEKVLALADSRLLIPHAGTHPAVESLNAS 238 Query: 267 NAAAVAL 273 +A + + Sbjct: 239 VSAGILM 245 >gi|123966693|ref|YP_001011774.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9515] gi|123201059|gb|ABM72667.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9515] Length = 296 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 99/278 (35%), Gaps = 18/278 (6%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 +++ + +++ K+ +SF +K +T + + G H + + + + ++L T Sbjct: 12 IENIYPKITSKSNALVKRFRSF-KKGSNTKDKDYFCIEGTHLIEEIIKSGNYP-SKILTT 69 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134 + L + + + P + V + + V G+A + Sbjct: 70 EKWLYKNEELSQKFDPSLIIVVSEEVLASAVS-TKNPDGVAALVQSSSILNFEINNEDDF 128 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-------------SESAVLAKSAS 181 ++VLD + DP N+G + R+A+A + ++ +P Sbjct: 129 MLVLDRIQDPGNMGNLFRTALAAGVNKVLLAGGANPLGQKVLRASSGSVFHLPFKRFDGG 188 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 + + S+KP + + ALILG EG G+ Sbjct: 189 EEEIINSLLTSLDQFSKNGFQIISTSSHNKNPDKSQKPYWEIDWSKPTALILGNEGNGIH 248 Query: 242 PKTQETATSMAHLHMPGIIKALNVS-NAAAVALYITQN 278 + QE T + ++++LNV+ A + L + Sbjct: 249 ERIQEAFTETITIPHSELVESLNVACVAVPLLL-ERKR 285 >gi|88809150|ref|ZP_01124659.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 7805] gi|88787092|gb|EAR18250.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 7805] Length = 291 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 48/294 (16%), Positives = 89/294 (30%), Gaps = 30/294 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M+ IS + E I S R + K+++S ++ + + + L G H V Sbjct: 1 MSAISGAEGEPISS----------RRNPLIKRIRSLQSRT-GREKEQCVLLEGTHQVQEL 49 Query: 61 LNNPS---RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L + L A LP P ++ + + + + + Sbjct: 50 LAQALPWTDPLQVLATPLWFQNHQALLAGLPGPVQLQLMSSEALGAALSTVHP---DGVA 106 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS------ 171 + ++ LD + DP N+G +LR+A+A + + P Sbjct: 107 CLWPFNRLPSPGPQPNFVLALDRLQDPGNVGTLLRTALAADVEQVWMGAGADPLGSKVVR 166 Query: 172 -------ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + + A + +P Q Sbjct: 167 SAAGAILTLPLRRFGLTDAQGVEQLATALKEARTRGLQVVATLVPNAATGLQVEPYWQLD 226 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+LG EG GL P+ + L +++LNV+ AA L + Sbjct: 227 WCRPTVLVLGNEGSGLHPRLLACCSHGVTLPHGRKVESLNVAAAAVPLLLERRR 280 >gi|116491407|ref|YP_810951.1| rRNA methylase [Oenococcus oeni PSU-1] gi|116092132|gb|ABJ57286.1| rRNA methylase [Oenococcus oeni PSU-1] Length = 233 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 11/231 (4%) Query: 58 SAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 L N + I +L +K+ + V+ V Q +D++ HQG+ Sbjct: 1 METLENN-QTINKLYLSKSLAKNRAQQFRQTAEQNKIVVQEVDNQRLDELTNH-GNHQGI 58 Query: 115 ALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 AL A LD + + L++LD + DPHN+G+ILR+A A DGII KR + Sbjct: 59 ALSIAAYEYVPLDDILNGIKDHDPFLVILDEIEDPHNLGSILRTADATGVDGIIIPKRRA 118 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + V+AK+++GA+EH+P R+ N+ + + K+ F G + + + Sbjct: 119 VQLTQVVAKTSTGAIEHVPVARVVNVNNTIDKLKKANFWIFGTDMKGTDYTDWN-ADGPV 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A+++G EGKG+ +T++ M + M G +++LN S AAA+ +Y N Sbjct: 178 AIVIGNEGKGISAQTKKKVDQMLTIPMIGHVQSLNASVAAALLIYQGFNSR 228 >gi|119026609|ref|YP_910454.1| tRNA/rRNA methyltransferase protein [Bifidobacterium adolescentis ATCC 15703] gi|118766193|dbj|BAF40372.1| tRNA/rRNA methyltransferase protein [Bifidobacterium adolescentis ATCC 15703] Length = 329 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 71/296 (23%), Positives = 129/296 (43%), Gaps = 29/296 (9%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ R ++ + + ++ TS+ ++L + G + V AL Sbjct: 23 TPKAEDRVYHKAYKAKKAADRRKMADPRLAARRRVAKFTSESDDLVI-GRNAVLEALRCG 81 Query: 65 SRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + R H + +D+I + + HQG+ L+ P Sbjct: 82 -VPATTLYVAARIEHDDRTREIVRLAGIHGLHLLEADRLEMDRIA-RSSNHQGVVLKAQP 139 Query: 121 LLSPTL---------------------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +L + L + LD V DP N+GA++RSA AF Sbjct: 140 FQYSSLAELVDRADKKARAMEAADSESARIAARPLFIALDGVTDPQNLGAVIRSAAAFGA 199 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +G+I +R S S +A K ++GA H+P R+ NLT A++ + G+ ++GL Sbjct: 200 NGVILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSVGLDGGGDAL 259 Query: 220 LEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + D + ++LG+EG GL +E S+A + M ++++LN S AA + LY Sbjct: 260 VGETGFETDPLVVVLGSEGNGLSRLVREACDSIAGIPMSNMVESLNASVAAGITLY 315 >gi|154487598|ref|ZP_02029005.1| hypothetical protein BIFADO_01455 [Bifidobacterium adolescentis L2-32] gi|154083727|gb|EDN82772.1| hypothetical protein BIFADO_01455 [Bifidobacterium adolescentis L2-32] Length = 330 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 71/296 (23%), Positives = 129/296 (43%), Gaps = 29/296 (9%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ R ++ + + ++ TS+ ++L + G + V AL Sbjct: 25 TPKAEDRVYHKAYKAKKAADRRKMADPRLAARRRVAKFTSESDDLVI-GRNAVLEALRCG 83 Query: 65 SRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + R H + +D+I + + HQG+ L+ P Sbjct: 84 -VPATTLYVAARIEHDDRTREIVRLAGIHGLHLLEADRLEMDRIA-RSSNHQGVVLKAQP 141 Query: 121 LLSPTL---------------------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +L + L + LD V DP N+GA++RSA AF Sbjct: 142 FQYSSLAELVDRADKKARAMEAADSESARIAARPLFIALDGVTDPQNLGAVIRSAAAFGA 201 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +G+I +R S S +A K ++GA H+P R+ NLT A++ + G+ ++GL Sbjct: 202 NGVILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSVGLDGGGDAL 261 Query: 220 LEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + D + ++LG+EG GL +E S+A + M ++++LN S AA + LY Sbjct: 262 VGETGFETDPLVVVLGSEGNGLSRLVREACDSIAGIPMSNMVESLNASVAAGITLY 317 >gi|121594908|ref|YP_986804.1| tRNA/rRNA methyltransferase SpoU [Acidovorax sp. JS42] gi|120606988|gb|ABM42728.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax sp. JS42] Length = 260 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 91/254 (35%), Gaps = 10/254 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ K+++ +Q S + ++L G H SAAL + + + R Sbjct: 10 SRDNALLKELRRLSQDSSAYRKQGRVWLEGDHLCSAALARGQKPAVAVF--SESFWRQAP 67 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V + + + + LD +VLD + D Sbjct: 68 AEYARAAIK-NVVIADVLWSDISALESPAPMGFVLPLPEAEGLD---GRMPTVVLDRLQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G+ILRSA AF + K + S + ++ GA A + Sbjct: 124 AGNVGSILRSASAFGFTQVAALKGTAALWSGKVLRAGMGAHF----ALRLVEGLAPADID 179 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + SS L + I+G EG+G+ P Q+ A + PG ++L Sbjct: 180 RLEVPLLATSSHEGDFLHRAALPWPCGWIMGHEGQGVSPALQQRARRHIRIAQPGGEESL 239 Query: 264 NVSNAAAVALYITQ 277 NV AAA+ L+ + Sbjct: 240 NVGAAAAICLHASA 253 >gi|296169646|ref|ZP_06851264.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895643|gb|EFG75339.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 277 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 58/253 (22%), Positives = 104/253 (41%), Gaps = 6/253 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 ++ + S +++ S + GV V L + LL T LA L D Sbjct: 24 FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLAS-RFTAHALLGTDRRLAELAGDLA-GR 81 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P + + ++VG LA V ++ + VL+ VND N+G+ Sbjct: 82 AVPFYRTSAEVMAQVVGFHLNRGVLAAARRVPEPTVAGLVEGARTVAVLEGVNDHENLGS 141 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I R+A D ++ + + + G +PY R ++ L+ + GF+ Sbjct: 142 IFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKMLKQKGFRV 201 Query: 210 IGLSSDSKKPL----EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + ++ DS ++++IA+++GAEG GL P T + + + M +LNV Sbjct: 202 LAMTPDSTACALPEAMAAARDERIAVVVGAEGPGLTPATLRLSDARVRIPMSRGTDSLNV 261 Query: 266 SNAAAVALYITQN 278 + AAA+A Y Sbjct: 262 ATAAALAFYERAR 274 >gi|261337350|ref|ZP_05965234.1| tRNA/rRNA methyltransferase [Bifidobacterium gallicum DSM 20093] gi|270277727|gb|EFA23581.1| tRNA/rRNA methyltransferase [Bifidobacterium gallicum DSM 20093] Length = 293 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 58/277 (20%), Positives = 93/277 (33%), Gaps = 28/277 (10%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y + +++ + AL + L+ + D A + Sbjct: 17 YVNLTELQLRNKLEPSKGLFIAESPKVIDRALAAGREPLSLLVEEQWIDGMGDEFAFIDE 76 Query: 90 ----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV T+ K+ G LA L D RN+ + VL++V D Sbjct: 77 HWGPDIPVYIGSEATLHKLTGYRLHRGALAAMRRWPLPSVEDVCRNATRVAVLENVVDHT 136 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAI+RSA A D ++ T + A+ + G + +P+ RI D Sbjct: 137 NVGAIMRSAAALDVDAVLVTPSCADPLYRRAARVSMGTVFQVPWTRIGGEGDVRTADKHA 196 Query: 206 GFQTIGLSSDSKKPLEQEI------------------------KNDKIALILGAEGKGLR 241 + + DK+ALI G EG GL Sbjct: 197 WPEAGLEQLHGLGFTTVAMALTDDSISMQELERRLRSDPLERDHIDKLALIFGTEGDGLS 256 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 T A + M + +LNV+ ++AVA Y T+ Sbjct: 257 HTTIAHADLTVKIPMSHGVDSLNVAASSAVAFYATRK 293 >gi|158312236|ref|YP_001504744.1| RNA methyltransferase [Frankia sp. EAN1pec] gi|158107641|gb|ABW09838.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EAN1pec] Length = 386 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 13/245 (5%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVP--P 98 + + G + V AL L + R+ L + V Sbjct: 134 RRVETDELVVGRNAVVEALRAG-VPATTLYIAGGLDFDERIADARRLAGRAGLAVVDIGR 192 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILR 152 +D++ G A HQGLAL P D L++ LD V DP N+GA++R Sbjct: 193 FELDRLCG-TAPHQGLALSVPPFEYAHPDDVLAAAQAAAPGLVVALDGVTDPRNLGAVVR 251 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA AF G++ +R + +A K+++GA +P R NLT L+ G +GL Sbjct: 252 SAAAFGASGVVVPERRAAGVTAAAWKTSAGAAARLPVARAVNLTRTLRSFAESGLFVVGL 311 Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 ++D + L++ D + L++G+EGKGL E + M G +++LN A + Sbjct: 312 AADGEVSLDELQVATDPLVLVIGSEGKGLSRLVGECCDLRVRIPMAGQVESLNAGVATGI 371 Query: 272 ALYIT 276 AL Sbjct: 372 ALSEI 376 >gi|241761486|ref|ZP_04759574.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374393|gb|EER63890.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 249 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 95/236 (40%), Positives = 136/236 (57%), Gaps = 11/236 (4%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 +++ + + G H V AALNNP R I ++ AT+ ALA + D PV Sbjct: 3 RSRNKASPSHPRFW--GRHAVEAALNNPERHIRRIWATREALAPYNID----KSIPVTLS 56 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAIL 151 + + V +A HQG+ +E PL L + + L+VLD V DPHN+GAIL Sbjct: 57 DVADLGRFVPNDAPHQGIVIEVDPLPDIWLADLLDLPETDKRPLLVLDQVTDPHNVGAIL 116 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA AF GIIT R++P ES LA++ASGALE +P++R++NL AL ++ G+ IG Sbjct: 117 RSAAAFDALGIITQDRHAPPESGALARAASGALEVVPWVRVTNLARALDEIAEAGYWRIG 176 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L+ S+ L Q + + K AL+LGAEG+GLR T+ +A L + I++LNVSN Sbjct: 177 LTGHSEATLSQTLGSGKTALVLGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232 >gi|56551128|ref|YP_161967.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis ZM4] gi|56542702|gb|AAV88856.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis ZM4] Length = 249 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 95/236 (40%), Positives = 136/236 (57%), Gaps = 11/236 (4%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 +++ + + G H V AALNNP R I ++ AT+ ALA + D PV Sbjct: 3 RSRNKASPSHPRFW--GRHAVEAALNNPERHIRRIWATREALAPYNID----KSIPVTLS 56 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAIL 151 + + V +A HQG+ +E PL L + + L+VLD V DPHN+GAIL Sbjct: 57 DVADLGRFVPNDAPHQGIVIEVDPLPDIWLADLLDLPETDKRPLLVLDQVTDPHNVGAIL 116 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA AF GIIT R++P ES LA++ASGALE +P++R++NL AL ++ G+ IG Sbjct: 117 RSAAAFDALGIITQDRHAPPESGALARAASGALEVVPWVRVTNLARALDEIAEAGYWRIG 176 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L+ S+ L Q + + K AL+LGAEG+GLR T+ +A L + I++LNVSN Sbjct: 177 LTGHSEATLSQTLGSGKTALVLGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232 >gi|72382704|ref|YP_292059.1| tRNA/rRNA methyltransferase SpoU [Prochlorococcus marinus str. NATL2A] gi|72002554|gb|AAZ58356.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. NATL2A] Length = 278 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 46/272 (16%), Positives = 89/272 (32%), Gaps = 19/272 (6%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + + +K++ +K+ + +L L G H + AL + + + Sbjct: 4 SKRNPLVRKLRGLLKKT-GREEHSSLLLEGSHLLEEALKTNFLPTEVIATPEWCDQHEEI 62 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + V ++ + A+ L + A ++ ++ LD + D Sbjct: 63 LKKIASRTLLTLVTKNVLETSLSTVTPDGVAAIFPMQGLPKSGKAPKH---ILALDRIQD 119 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS---------- 193 P N+G + RSA+A + + P VL SA L Sbjct: 120 PGNLGNLFRSALAGEYEAMWLASGADPLNQKVLRSSAGSVLHMPFERIGHSSSSSIEMLV 179 Query: 194 ---NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 N+ ++ KP + + L+LG EG G+ + T Sbjct: 180 SKLNIAIDDNYQVVGTISPNKITDKKVKPYWELDWDLPTVLVLGNEGSGVHASIEACCTD 239 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 L ++ +LNV++AA L K Sbjct: 240 FVTLPHSSLVDSLNVASAAVPLLLE--RQRVK 269 >gi|166032323|ref|ZP_02235152.1| hypothetical protein DORFOR_02026 [Dorea formicigenerans ATCC 27755] gi|166028046|gb|EDR46803.1| hypothetical protein DORFOR_02026 [Dorea formicigenerans ATCC 27755] Length = 288 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 94/262 (35%), Gaps = 23/262 (8%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKT 95 ++ + + AL+ + L+ + L P+ T Sbjct: 28 NKDNPEAGLFIEESPKVIGRALDAGYIPVSALVEKHQMKENEETRQILERFEGSDVPIFT 87 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + + K+ G + L L D +++L++V +P N+GAI RSA Sbjct: 88 AEFEVLTKLTGFKLTRGMLCAMKRKPLLNYQDMCAGKDRIVILENVMNPTNVGAIFRSAA 147 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A + D + T S ++ + G + IP+ I + + + + Sbjct: 148 ALNMDAVFLTPGCSDPLYRRASRVSMGTVFQIPWTFIQDNNEMRCQREILWPRQAITELR 207 Query: 216 SKKP---------------LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + ++ +K+A+ILG EG+GL +T E + M + Sbjct: 208 EMGYKTAALALTDDSVGIDNPELMQEEKLAIILGTEGEGLMDRTIEMCDYTVKIPMSHDV 267 Query: 261 KALNVSNAAAVALYITQNHFAK 282 +LNV+ A+AVA + K Sbjct: 268 DSLNVAAASAVAFW----QLGK 285 >gi|188533075|ref|YP_001906872.1| putative methyltransferase [Erwinia tasmaniensis Et1/99] gi|188028117|emb|CAO95974.1| Predicted tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99] Length = 344 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 87/243 (35%), Gaps = 6/243 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG H A + I + ++ R + TV Sbjct: 101 RRQRMEETRVYGEHACQALFQSRPESIVRAWFVQSVTPRFRDALKWMAANRKAYHTVDDA 160 Query: 100 TIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K G V + +S L ++ L+ + +PHN+G I+RS Sbjct: 161 ELQKASGTEHHGGVCFLIKKRVGMPVSEWLAQSGQKDCVLALEDIGNPHNLGGIMRSCAH 220 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F G++ S ES ++A G EH+ I + L G+ + SS Sbjct: 221 FGAKGLLV-DDASLLESGAAVRTAEGGAEHVQAISGESFAAGLDAFRKAGYTIVTTSSHQ 279 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 PL + K+ L+LG E GL T E + G +++LNVS A V L Sbjct: 280 GIPLAKAELPAKMVLVLGQERDGLSDSTLEQGDLSVSISGTGNVESLNVSVATGVLLAEW 339 Query: 277 QNH 279 Sbjct: 340 WRQ 342 >gi|158334661|ref|YP_001515833.1| RNA methyltransferase [Acaryochloris marina MBIC11017] gi|158304902|gb|ABW26519.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017] Length = 261 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 94/238 (39%), Gaps = 6/238 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWD 84 + K+M+ Q +H Q L L G H + +A +I A W Sbjct: 6 QNPLIKQMRKLQQ-VKHRRQQGKLLLEGTHLLQSAWEQNWSFEIVCYTDRWQAKYPQIWQ 64 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 ++ V P+ + + G+ + +P+L L + L+ + DP Sbjct: 65 QIQDRTTRLERVSPEVL-QATATTVHPDGVVAVISRPATPSL---PIQTLGLALETIQDP 120 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G ++R++VA +G++ ++ + ES + ++++GA H+P LQ Sbjct: 121 GNLGTLIRTSVATQVEGLLLNQQCADLESPKVLRASAGAWFHLPQRATDKFVTVLQTYKQ 180 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G Q I D+ Q +++G EG GL + A ++ + +++ Sbjct: 181 QGMQLIATVPDASHTFWQVDYRQPTLILIGNEGAGLSQPVLDLADHQVNIPIAPGVES 238 >gi|119357948|ref|YP_912592.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM 266] gi|119355297|gb|ABL66168.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM 266] Length = 268 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 102/251 (40%), Gaps = 10/251 (3%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWDANLPH 89 ++ +K ++ Q G+ TV N P + L + L +P Sbjct: 15 RRFVKLQEK-KYRDQDGLFLAEGLRTVRELCQNIPDESMLLALLLREGEIGLGGFPEIPE 73 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + + + + A + + + D + LL+ LD V DP Sbjct: 74 D-KLYVMNSEQCSLLSSTAAPQGVIGVFRQQQVSRYPCGFKDEKKGRSLLIALDEVQDPG 132 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ILR+A F D +I + + +A + +S++G+L +P+ + L AL+++ + Sbjct: 133 NVGTILRTAAWFGADALICSTGTADRYNAKVVRSSAGSLYALPHYTVERLDLALEELAAS 192 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKA 262 G+ I S D + K L++G E G+ Q A + + G +++ Sbjct: 193 GYAIICSSLDGEDFRSFVSWPQKQVLVIGNEANGVSRVVQNLAERLVRIPHGGGKSRVES 252 Query: 263 LNVSNAAAVAL 273 LN S +AA+ + Sbjct: 253 LNASVSAAILM 263 >gi|295111122|emb|CBL27872.1| rRNA methylase, putative, group 3 [Synergistetes bacterium SGP1] Length = 305 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 68/253 (26%), Positives = 116/253 (45%), Gaps = 10/253 (3%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVK 94 ++S P + +G V + N + +LL N D + Sbjct: 46 RRSAERPLPPDDVCWGRQPVLDLVRNTPSRCTRLLIANNVRPPYLDELVDLARAGRVVYQ 105 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIG 148 V P+ +DK+ E HQG+A + L+ L++VLDHV DPHN+G Sbjct: 106 LVAPEALDKLCPGER-HQGVACRLTETVPVDLEPFLKALPAEAPALIVVLDHVEDPHNLG 164 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+RSA A + ++R S + K+++GA +P I + N+ L ++ + GF Sbjct: 165 AIVRSAEAAGAAAAVYSRRRSALPGGTVVKTSAGASLRLPMIPVVNVVRTLAQLQAAGFW 224 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 T+GL + L ++ ++AL++GAEG+GL E+ + + + G + +LN S A Sbjct: 225 TVGLEGRAGASLWEDGLPARLALVVGAEGEGLSRLVGESCDQLLRIPIQGGVGSLNASVA 284 Query: 269 AAVALYITQNHFA 281 AA ++ A Sbjct: 285 AAFGMFEWSRTRA 297 >gi|194337498|ref|YP_002019292.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme BU-1] gi|194309975|gb|ACF44675.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme BU-1] Length = 269 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 10/254 (3%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDAN 86 +K +QK + Q G+ TV LN PS ++ L + A + Sbjct: 12 AKLQKYVKLHQK-KFRDQERLFLAEGLRTVRELCLNLPSEEMLVALLVREGEAEVARF-A 69 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVN 142 P + ++ + ++ + + A + L++ LD V Sbjct: 70 QPWKGKLFSIGEKECAQLSETATSQGIFGVFRQQRPVEPAAEAVSATSDKSLIVALDDVQ 129 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ILR+AV F D +I + + +A +S +G++ I + + L L Sbjct: 130 DPGNVGTILRTAVWFGADALICSTGTADRYNAKAVRSCAGSIYAIRHYGVDRLERELLWF 189 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---I 259 G+ S + K E K L++G E G+ + A + + G Sbjct: 190 KKQGYSITSSSLEGKDFREFSSWPAKQVLVIGNEANGISEPVKALADRLVRIPHSGRSVR 249 Query: 260 IKALNVSNAAAVAL 273 +++LN + +AA+ + Sbjct: 250 VESLNAAVSAAILM 263 >gi|284991463|ref|YP_003410017.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM 43160] gi|284064708|gb|ADB75646.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM 43160] Length = 261 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 83/242 (34%), Gaps = 4/242 (1%) Query: 35 SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94 + G V+ AL +P+ L A A D P PV+ Sbjct: 15 RKLTRRAGRDAAGLFLAEGRQAVAEALADPAGVREVL--ATEAAAAAHRDLLAAAPVPVR 72 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 V + + +A+ + + L + L + DP N G +LR+A Sbjct: 73 LVTDKAAAALSETVTPQGLVAVCALRDVPTDVLVDAPPSLTVALAELADPGNAGTVLRTA 132 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD--ALQKMHSWGFQTIGL 212 A ++ + +S++G+L H+ +R + L + + Sbjct: 133 DACGAGAVVFGAGSADPYGGKAVRSSAGSLFHVDVVRGAPLPELLPRLRAAGVTVLAADG 192 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 ++ + + G E +G+ A + + M G ++LN++ AAA+ Sbjct: 193 GGEAALDELGPELAGPVLWLFGNEARGVPAALAALADARVRIPMRGRAESLNLAAAAAIC 252 Query: 273 LY 274 LY Sbjct: 253 LY 254 >gi|291455637|ref|ZP_06595027.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve DSM 20213] gi|291382565|gb|EFE90083.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve DSM 20213] Length = 332 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 68/304 (22%), Positives = 127/304 (41%), Gaps = 28/304 (9%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ R ++ + + + S + +YG ++V AL Sbjct: 25 TPKAEDRVYHKAYKAKKAAERRQMADPRLAARRRVDKFASADTSDLVYGRNSVLEALRVG 84 Query: 65 SRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + R + + +D+I + HQG+ L+ P Sbjct: 85 -VPSSTLYIMSRIEHDDRTREIVKIAGMNGLHMLEADRLEMDRIA-RSGNHQGVILKVDP 142 Query: 121 LLSPTL---------------------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +L + L + LD V DP N+GA++RSA AF Sbjct: 143 FQYSSLRELADRAEKKAKAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGA 202 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +G+I +R S S +A K ++GA H+P R+ NLT A++ + G+ +GL K Sbjct: 203 NGVILPERRSASVNAAAWKVSAGAAAHMPVARVVNLTKAIEGLKERGYYVVGLDGGGDKL 262 Query: 220 LEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + D + ++LG+EG GL +E+ ++A + + +++LN S AA ++LY Sbjct: 263 VGETGFETDPLVVVLGSEGSGLSRLVRESCDAIAGIPISSSVESLNASVAAGISLYAVSR 322 Query: 279 HFAK 282 + Sbjct: 323 ARRE 326 >gi|145589617|ref|YP_001156214.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048023|gb|ABP34650.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 274 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 94/265 (35%), Gaps = 12/265 (4%) Query: 24 RRNHRDYKKMQSFN----QKSRHTSQPENLFLYGVHTVSAALNNPSRKI----FQLLATK 75 +++ +K+++ + + L G+H V L +P KI L Sbjct: 8 SKDNALFKEVRLLQATGSKGQKARLACGQALLEGIHLVQTWLGDPGLKILFTSEVGLKNS 67 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ--GLALETAPLLSPTLDAVRNSQ 133 + + V + D + GL L+P+ + Sbjct: 68 EIAQAVYSHLEICPDTKVYQLDSALWDLLSELVNAPHLAGLLDLPKSSLAPSQSIATLAG 127 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++LD V D N+G+ILR+A A ++ + S + ++ GA + + Sbjct: 128 DVVILDRVQDAGNVGSILRTAAAAGFTQVLALSGCAHLWSNKVLRAGMGAH-RLLDLYEG 186 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + + + +A ++G+EG+G+ A Sbjct: 187 WSNQQVLSAVTAPLLAATADAKCDLFSLKNDLLHPVAWVMGSEGQGVSEDLLAQAKG-IS 245 Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278 + + +++LNVS AAA+ L+ T Sbjct: 246 IPIDPRVESLNVSTAAAICLFETVR 270 >gi|317480785|ref|ZP_07939871.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36] gi|316903126|gb|EFV24994.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36] Length = 265 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 84/236 (35%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + + ++R + AL+ + L K+ Sbjct: 17 FSTLTEAQLRNRLEPDKGLFIAESPKVIKVALDAGYEPLAFLCEHKHIYGDAAEIIERCG 76 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + ++ G L P+ D R ++ ++V+D V D NIGA Sbjct: 77 DIPVYTSGRELLAELTGYVLTRGVLCAMRRPVPKSMEDVCRGARRIVVIDGVVDTTNIGA 136 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T+ + + + G + +P+ + D L ++ Sbjct: 137 IFRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGPLDTLGELGFRTAAM 196 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + ++A+++G EG GL + A + + M + +LNV Sbjct: 197 ALTDNSISIDNPVLKTEPRLAIVMGTEGDGLSHEAIAGADYVVRIPMAHGVDSLNV 252 >gi|163868747|ref|YP_001609964.1| TrmH family tRNA methyltransferase [Bartonella tribocorum CIP 105476] gi|161018411|emb|CAK01969.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella tribocorum CIP 105476] Length = 271 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 67/266 (25%), Positives = 114/266 (42%), Gaps = 13/266 (4%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I ++ +++ +LR H + + + + G T+SA L++ L Sbjct: 5 IITIDETNDPRLRDYHNI--REKDLVGR------QQQFIAEGKITLSALLHSKEFSALSL 56 Query: 72 LATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQG---LALETAPLLSPTLD 127 L L L P P+ VP + +D I G +T P L L Sbjct: 57 LIVAKRLPGLLPLLEKTQPPCPIYCVPQKVMDDITGFHVHRGILGIGKRKTLPSLQSFLK 116 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + L++VL +++ N+G+I R+A AF+ GII K + ++GA + Sbjct: 117 NLPEKALILVLCGISNHDNMGSIFRNAAAFASHGIIVDKTSCDPLYRKSIRVSAGAALKV 176 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 PY + +++ D + +H F LS + L Q K + ALI G EG GL P + Sbjct: 177 PYTQNADINDIIAALHDENFHLYALSPSAPHTLRQAHKTKRTALIFGTEGDGLPPHVLQQ 236 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 +T+ + M +LNV+ A+ +AL Sbjct: 237 STA-LRIPMTDGFDSLNVATASGIAL 261 >gi|145595526|ref|YP_001159823.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440] gi|145304863|gb|ABP55445.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440] Length = 321 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 96/280 (34%), Gaps = 23/280 (8%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 I+ ++I DY+ + ++R G + AL Sbjct: 57 QITDPDDDRI---------------ADYRALTDVELRTRWEPPHGLFIAEGELVLRRALR 101 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 L+ K R++ A+L PV P + +I G LA Sbjct: 102 AGYPARSYLVDAK----RVEQIADLHTGEAPVYAATPDVLRQITGFHVHRGVLASFRRQR 157 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 + + ++ +++L+ VN+ N+G+I R+ D ++ + + + + Sbjct: 158 QPTAAEVLGTARRVVILEDVNNHTNLGSIFRAVAGLGVDAVLLSPTCADPLYRRSVRVSM 217 Query: 182 G---ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 G A+ + + ++ + + + AL+LGAEG Sbjct: 218 GEVFAVPYATLGPWPDALAEVRAAGFSVLALTPAPDAVPIQRLEPGQRARAALLLGAEGS 277 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 GL + E + + M + +LNV+ A AVA + Sbjct: 278 GLTREAMEASDVRLVIPMRRSVDSLNVAAATAVACWELGR 317 >gi|15843192|ref|NP_338229.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] gi|308232506|ref|ZP_07416270.2| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001] gi|13883545|gb|AAK48043.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] gi|308213805|gb|EFO73204.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001] Length = 253 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 104/234 (44%), Gaps = 10/234 (4%) Query: 53 GVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEA 109 G + V L + A RL + + +D++ Sbjct: 3 GRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLRADLDRMTANH- 61 Query: 110 VHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 +HQG+AL+ P D + LL+ LD+++DP N+GAI+RS AF G++ Sbjct: 62 LHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVL 121 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +R S S +AV ++++GA IP R +NLT L+ G + IGL + L+ Sbjct: 122 IPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALDDV 181 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D + +++G+EGKGL ++ + + M ++LN S AA V L Sbjct: 182 DGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIA 235 >gi|323464763|gb|ADX76916.1| RNA methyltransferase, TrmH family [Staphylococcus pseudintermedius ED99] Length = 248 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 107/277 (38%), Gaps = 30/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ KI + +K + + L G H + A Sbjct: 1 MEAITSIQNPKIK-------------------NYNKLKKKKERDKQGLAILEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + K+ QL + + + V + + + + G Sbjct: 42 VES-QIKVTQLFMIEPSRVPTELIEAAE---EVYEITQKVAETLSGTVTPQG-----IFA 92 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 ++ V ++ +++LD + DP N+G ++R+A A D I+ TK + + +++ Sbjct: 93 IIEKPQVDVTAAKQVLILDRIQDPGNLGTMIRTADAAGLDLIVMTKGTADVYQDKVLRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ HIP + +++ + + T + + + D ALILG EG+G+ Sbjct: 153 QGSVFHIPIQYVDDMSAWMSSFKGPIYGTALQDA--TTYHQVASQQDTFALILGNEGEGV 210 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 T + + G ++LNV+ AA V ++ + Sbjct: 211 AMDLLAHTTQNLIIPIYGQAESLNVAVAAGVLMFYLK 247 >gi|327290181|ref|XP_003229802.1| PREDICTED: RNA methyltransferase-like protein 1-like [Anolis carolinensis] Length = 406 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 39/324 (12%), Positives = 89/324 (27%), Gaps = 62/324 (19%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + Y K + K+ + + + + L G + AL + ++ Sbjct: 72 EPRYEKAGPGDKRLSKVVTLAKSRAFREKHGKILLEGRRLILDALEAGAAPQTLFFSSTE 131 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH----QGLALETAPLLSPTLDAVRNS 132 L L A + V + + + A + P + Sbjct: 132 HLKELP--AAKLRGASLIKVNSKDLKDWSDVVTSQGAIGIFSRPDHAKMTYPEVPEEHQL 189 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L ++ D++ DP N+G ILRSA C ++ K + + ++ GA +P + Sbjct: 190 PLSLICDNIRDPGNLGTILRSAAGAGCSRVLLVKGCVDAWEPKVLRAGMGAHFRLPIVSN 249 Query: 193 SNL----------------------------------------------------TDALQ 200 Sbjct: 250 LEWDLVPNYLLPESCVYVADGSHAAGPQTDTGPPPPSPSKACSHGWVSRSSGLKPWADWD 309 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHM 256 + + + + + +A+++G E G+ + A + + Sbjct: 310 RDLDSQEEGEDEKTVEGQCCYDPWMDLSVAVVIGGETHGVSEEAMRLAQDTGGRRLLIPI 369 Query: 257 PGIIKALNVSNAAAVALYITQNHF 280 + +LN + AA++ L+ + Sbjct: 370 APGVDSLNAAMAASILLFEAKRQL 393 >gi|296090517|emb|CBI40848.3| unnamed protein product [Vitis vinifera] Length = 1306 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 53/287 (18%), Positives = 98/287 (34%), Gaps = 26/287 (9%) Query: 18 SHYAKL-RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN----NPSRKIF--Q 70 SH + ++ K S + + + G + R + Sbjct: 1008 SHVKSITSPSNPFVKHCFKLRHSSSYRYSHGSALVVGTTPIREIYKFQQSTQERTVEMDC 1067 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD--- 127 LL A D V ++ + + + E+V + D Sbjct: 1068 LLILDKAEIPEGLDDFSVRLVRVSSMVMKKLSGLQSTESVEAIALMRIPTSFFSVNDDTY 1127 Query: 128 ------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 ++ ++VLD + DP N+G +LRSA+AF G+ + +++ Sbjct: 1128 EKDCRRWFQSPHRILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSGCCDPFNGKALRASR 1187 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---------KIALI 232 GA +P + S + K G ++K + + L+ Sbjct: 1188 GASFQLPIVSGSWIHLETLKNEFQMKMIAGHPDSNQKRKPVSPLSQGLADSLADVPLCLV 1247 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 LG+EG GL K+ + + + M G ++LNVS A + LY+ Q Sbjct: 1248 LGSEGSGLSEKSWQLC-ELVSIPMAGEFESLNVSVAGGIFLYMLQPQ 1293 >gi|189467568|ref|ZP_03016353.1| hypothetical protein BACINT_03958 [Bacteroides intestinalis DSM 17393] gi|189435832|gb|EDV04817.1| hypothetical protein BACINT_03958 [Bacteroides intestinalis DSM 17393] Length = 267 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 85/236 (36%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + + ++R + AL+ + L K+ + Sbjct: 17 FSTLTEAQLRNRIEPDKGLFIAESPKVIRVALDAGYEPLALLCEQKHITGDAADIISRCG 76 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + + G L P D R+++ ++V+D V D NIGA Sbjct: 77 DVPVYTGGRELLATLTGYVLTRGVLCAMRRPAPRTVEDTCRDARRIVVIDGVVDTTNIGA 136 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T+ + + + G++ +P+ + L + Sbjct: 137 IFRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWLDGTLSDLARHGFRTAAM 196 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + ++A+++G EG+GL P T A + + M + +LNV Sbjct: 197 ALTDNSISIADPVLTSEPRLAIVMGTEGEGLPPDTIAAADYVVRIPMAHGVDSLNV 252 >gi|291456687|ref|ZP_06596077.1| tRNA/rRNA methyltransferase [Bifidobacterium breve DSM 20213] gi|291381964|gb|EFE89482.1| tRNA/rRNA methyltransferase [Bifidobacterium breve DSM 20213] Length = 292 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 96/276 (34%), Gaps = 28/276 (10%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD----WDA 85 Y + ++R + AL + L+ + D Sbjct: 17 YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAAGREPLSLLVEEPWLEGMTETFDFIDD 76 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV P+ + ++ G L L + ++++ + V++++ D Sbjct: 77 RWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWPLPSVAEVCKDARRVAVMENIVDHT 136 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA++RSA A D ++ T A+ + G + IP+ RI+ + + + Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGRNEDGTENKHY 196 Query: 206 GFQT------------------------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 L+ P E +K+ALI G EG GL Sbjct: 197 WPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIEKLALIFGTEGDGLS 256 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 T A + M + +LNV+ ++AVA Y T+ Sbjct: 257 HHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292 >gi|118616143|ref|YP_904475.1| rRNA methyltransferase [Mycobacterium ulcerans Agy99] gi|118568253|gb|ABL03004.1| rRNA methyltransferase [Mycobacterium ulcerans Agy99] Length = 268 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 97/254 (38%), Gaps = 6/254 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ S + GV V L + LL T L L D Sbjct: 14 DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMLASRFSP-RALLGTDRRLLELKEDLA-G 71 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P V P + ++VG LA + + V ++ + VL+ VND N+ Sbjct: 72 VGAPYYRVSPDVMAQVVGFHLNRGVLAAASRVVEPSVGQVVDGARTIAVLEGVNDHENLS 131 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +I R+A +I + + + G +PY R ++ L + GF+ Sbjct: 132 SIFRNAAGLGVHAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELVALKERGFR 191 Query: 209 TIGLSSDSK----KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ + + +AL++GAEG GL + + M +LN Sbjct: 192 LLALTPKGDARALPEAMDAVGDQPVALLVGAEGPGLTAAALRISDLRVRIPMSRGTDSLN 251 Query: 265 VSNAAAVALYITQN 278 V+ AAA+A Y Sbjct: 252 VATAAALAFYERAR 265 >gi|290508236|ref|ZP_06547607.1| TrmH family RNA methyltransferase [Klebsiella sp. 1_1_55] gi|289777630|gb|EFD85627.1| TrmH family RNA methyltransferase [Klebsiella sp. 1_1_55] Length = 361 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 91/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 117 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 176 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ ++ ++ L+ V +PHN+GAI+RS Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRHGTSVAQWVAKAAEEDCVLALEDVGNPHNLGAIMRSCA 235 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + ES ++A G EH+ I + D L + G+ + SS Sbjct: 236 HFGVKGVVV-QDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFRKAGYAIVSTSSH 294 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + PL + K+ L+LG E GL ++ + G +++LNVS A V L Sbjct: 295 NGTPLFKAELPKKMVLVLGQERDGLSDAAISSSDLSVAIDGTGNVESLNVSVATGVLLAE 354 Query: 276 TQNH 279 Sbjct: 355 WWRQ 358 >gi|288934040|ref|YP_003438099.1| tRNA/rRNA methyltransferase (SpoU) [Klebsiella variicola At-22] gi|288888769|gb|ADC57087.1| tRNA/rRNA methyltransferase (SpoU) [Klebsiella variicola At-22] Length = 361 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 91/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 117 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 176 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ ++ ++ L+ V +PHN+GAI+RS Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRHGTSVAQWVAKAAEEDCVLALEDVGNPHNLGAIMRSCA 235 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + ES ++A G EH+ I + D L + G+ + SS Sbjct: 236 HFGVKGVVV-QDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFRKAGYAIVSTSSH 294 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + PL + K+ L+LG E GL ++ + G +++LNVS A V L Sbjct: 295 NGTPLFKAELPKKMVLVLGQERDGLSDAAISSSDLSVAIDGTGNVESLNVSVATGVLLAE 354 Query: 276 TQNH 279 Sbjct: 355 WWRQ 358 >gi|194467106|ref|ZP_03073093.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23] gi|194454142|gb|EDX43039.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23] Length = 290 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 55/271 (20%), Positives = 102/271 (37%), Gaps = 20/271 (7%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-----AN 86 ++ P + AL R L+ K L N Sbjct: 20 RLNEAQLFHAFEPNPGLFIAESPKVIERALRAGYRPASLLIEEKELERDLADLDHEMAIN 79 Query: 87 LPHPF---PVKTVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLD-----AVRNSQLLMV 137 P+ V + + ++ G + +G + P+LD + + + Sbjct: 80 QTRGLEQTPIYVVNSKLLRQLAGGGYNLLRGALAAMHRVERPSLDNFLATMPSDHPRIAI 139 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L+ V +P NIGAI RSA A DG+I T + ++ A G + +P+ + Sbjct: 140 LESVVNPTNIGAIFRSAAALGIDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDAKAW 199 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKN------DKIALILGAEGKGLRPKTQETATSM 251 + + ++ + + +I + D++A+ILG+EG GLR +T + Sbjct: 200 RSEGIDLLHRFGYKTAAMALRHNTVDIDDPQLAEADRLAIILGSEGPGLREETITQSDFT 259 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M + +LNV+ A+A+A + N K Sbjct: 260 IKIPMAAGVDSLNVAAASALAFWELGNRKVK 290 >gi|228476265|ref|ZP_04060967.1| SpoU rRNA Methylase family protein [Staphylococcus hominis SK119] gi|228269668|gb|EEK11170.1| SpoU rRNA Methylase family protein [Staphylococcus hominis SK119] Length = 246 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 97/277 (35%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ KI + + +K + + + G+H + A Sbjct: 1 MEQITSTQNNKIK-------------------LANKLKKKKERDKTGLALIEGIHLIDEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + + + + + G Sbjct: 42 FKSNIMIKQLFVIEPERTDSRLLEYAKEA----YEINMKVAESLSGTITPQ--GFFAVIE 95 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + +++LD + DP N+G ++R+A A D ++ K + + + +++ Sbjct: 96 KPKHDISKAKQ---VLLLDRIQDPGNLGTLIRTADAAGIDMVVMEKGTADAYQDKVMRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ HIP + Q + + K Q+I AL+LG EG+G+ Sbjct: 153 QGSVFHIPIVTTELNKFIEQFDGPVYGTALENAVSYKNIESQDIF----ALLLGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + + G ++LNV+ A ++ LY + Sbjct: 209 NKELLAHTSQNLIIPIYGKAESLNVAIAGSILLYHLK 245 >gi|253584032|ref|ZP_04861230.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725] gi|251834604|gb|EES63167.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725] Length = 255 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 88/274 (32%), Gaps = 27/274 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M+ I+ ++ I +K K + + + G Sbjct: 1 MDYINSLENSTIKKIKKLKIKK-------------------YREEEQLFIAEGRK----F 37 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+ P + + V + ++ +E Sbjct: 38 LDFPFEPEIIIFRESYEITEEIQLKLKKFQCRKIVVSEKVFTQLTSQENSQGV----III 93 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + ++VLD + DP N+G I+R A A I+ TK + + +S+ Sbjct: 94 YPYIKGALENLQKNVVVLDKIGDPGNLGTIIRVADAAGFKDILLTKGSVDCYNEKVVRSS 153 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ ++ I + + + Q +K A++ G+EG G+ Sbjct: 154 MGSIFNMNIIYMEEEELIALLKKEEYKIVVTALEKNSVSYTQMKLAEKNAIVFGSEGDGV 213 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + GI ++LNV+ A+ + LY Sbjct: 214 SQNFLKVCDEKIIIPIYGIAESLNVAMASGIILY 247 >gi|124026423|ref|YP_001015538.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. NATL1A] gi|123961491|gb|ABM76274.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. NATL1A] Length = 278 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 87/272 (31%), Gaps = 19/272 (6%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + + +K++ +K+ + +L L G H + AL + + + Sbjct: 4 SKRNPLVRKLRGLLKKT-GREEHSSLLLEGSHLLEEALKTNFLPTEVIATPEWCDQHEEI 62 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + V ++ + + L + A ++ ++ LD + D Sbjct: 63 LKKIASRTLLTLVNKNVLETSLSTVTPDGVATIFPMQGLPKSGKAPKH---ILALDRIQD 119 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS---------- 193 P N+G + RS +A + + P VL SA L Sbjct: 120 PGNLGNLFRSGLAGEYEVMWLASGADPLNQKVLRSSAGSVLHMPFERIGHSSSSSIEMLV 179 Query: 194 ---NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 N+ ++ KP + + L+LG EG G+ + T Sbjct: 180 SKLNIAIDDNYQVVGTISPNKITDKKVKPYWELDWDLPTVLVLGNEGSGVHASIEACCTD 239 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 L ++ +LNV++AA L K Sbjct: 240 FVTLPHSSLVDSLNVASAAVPLLLE--RQRVK 269 >gi|149187261|ref|ZP_01865559.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1] gi|148838797|gb|EDL55736.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1] Length = 246 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 41/252 (16%), Positives = 90/252 (35%), Gaps = 14/252 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ +QK + + G V L S I + AT L + Sbjct: 8 KLLRALSQK-KQRKAHGLFLVEGEKNVLELLET-SMVIKHVFATSEF---LASNREALQR 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + + K + + +A+ P + +++ LD V+DP N+G I Sbjct: 63 VECIEASLEELTKASSLVSNNAAVAVVAIPQT----EIPAAKGMMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + I+ + + + ++ G+ + + + Q + Sbjct: 119 IRIADWYGIKHIVASTDCADPYNPKTIRATMGSFGRVQVTLLDLPSYLEQASLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + K + + L++G+E G+RP + T + G ++LNV+ A Sbjct: 179 EGENVHKMT-----FSPEGILLMGSESHGVRPDAAQYVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNHFAK 282 + L + ++ Sbjct: 234 IILDNFRRQHSE 245 >gi|325295000|ref|YP_004281514.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065448|gb|ADY73455.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium thermolithotrophum DSM 11699] Length = 237 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 7/238 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGV+ V+ AL + ++ A K R + + K Sbjct: 2 VVYGVNPVAEALRAGY-PVLKIYAEKTFRDREKILPFARKRGIKIVKVGKKKLFELAKTE 60 Query: 110 VHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 HQG+ +P+ + + L L+ LD + DPHN+GAI RSA AF GI+ Sbjct: 61 KHQGIVAVISPVEPKDFEELVQRALETNGCLLFLDRIEDPHNLGAIFRSADAFGVAGIVL 120 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 K S + + + K+++GA+ +IP+ +S+ K + K + Sbjct: 121 PKDRSATITNTVVKASTGAVFYIPFSIVSSF-RLALKKFKEAGGWLIGLESGGKSISNYS 179 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + L+ G+EGKGL T + + M G + +LNVSNA A+ LY+ +K Sbjct: 180 FPFPLGLVAGSEGKGLSKTTLKLLDDTVTIPMKGHVNSLNVSNAVAIGLYLVSQQQSK 237 >gi|320093952|ref|ZP_08025781.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979110|gb|EFW10624.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 287 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 47/264 (17%), Positives = 97/264 (36%), Gaps = 13/264 (4%) Query: 26 NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++ +++ S+ + + G V L + + + + A Sbjct: 3 DNPRSDRVRRVAGLSGRSARSRASAVLVEGPQAVRELLVHRPASVRDVYISAAARLAHPG 62 Query: 84 DANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 A V TV + + A + + + +++ Sbjct: 63 IAGAARSATRWVHTVTDEVAAALSADCQ----GVCAVASADAIVREWPADGGFYVIIAQG 118 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+A A ++T + S + ++++G++ H+P I A+ Sbjct: 119 RDPGNVGTIIRTADAMGARAVLTVAGTADVTSPKVVRASAGSVFHLPVIPHPAFGAAVDA 178 Query: 202 MHSWGFQTIGLSSDSKKPLEQEI-----KNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 +H+ G + +G S + + A LG E +GL + + M Sbjct: 179 LHARGARVLGTSGGPRAVPLPAVEEEGALAGPHAWALGNEARGLDADEVAACDLLVAIPM 238 Query: 257 PGIIKALNVSNAAAVALYITQNHF 280 G+ ++LNV++AAAV LY +Q Sbjct: 239 TGLAESLNVASAAAVCLYASQRAR 262 >gi|270296205|ref|ZP_06202405.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273609|gb|EFA19471.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 265 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 84/236 (35%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + + ++R + AL+ + L K+ Sbjct: 17 FSTLTEAQLRNRFEPDKGLFIAESPKVIKVALDVGYEPLALLCEHKHIYGDAAEIIERCG 76 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + ++ G L P+ D R ++ ++V+D V D NIGA Sbjct: 77 DIPVYTSGRELLAELTGYVLTRGVLCAMRRPVPKSMEDVCRGARRIVVIDGVVDTTNIGA 136 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T+ + + + G + +P+ + D L ++ Sbjct: 137 IFRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGPLDTLGELGFRTAAM 196 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + ++A+++G EG GL + A + + M + +LNV Sbjct: 197 ALTDNSISIDNPVLKTEPRLAIVMGTEGDGLSHEAIAGADYVVRIPMAHGVDSLNV 252 >gi|291563020|emb|CBL41836.1| rRNA methylases [butyrate-producing bacterium SS3/4] Length = 280 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 86/247 (34%), Gaps = 7/247 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + +P + + ALN + L+ K A + PV T + Sbjct: 30 NEPKPGIFIAESPNVIERALNAGYEPLAVLIEEKQADDLIPKLFFAYPELPVYTAKFDLL 89 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + G L +L + + VL++V +P NIGAI RSA A D Sbjct: 90 TNLTGFALTRGLLCAMKRKILPSVAEICEGKHRIAVLENVMNPTNIGAIFRSAAALGMDA 149 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ T S A+ + G + IP+ D ++ + Sbjct: 150 VLLTSGCSDPLYRRAARVSMGTVFQIPWTFFPKNADLSCGGLEALRSLGFQTAAMALKED 209 Query: 222 QEIKNDK-------IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +D +A+ILG EG GL T + M + +LNV+ A+AVA + Sbjct: 210 SVSIDDPKLLAAEKLAVILGTEGDGLASATIGGCDHTVMIPMAHGVDSLNVAAASAVAFW 269 Query: 275 ITQNHFA 281 + Sbjct: 270 ELTKNRK 276 >gi|294630049|ref|ZP_06708609.1| TrmH family RNA methyltransferase [Streptomyces sp. e14] gi|292833382|gb|EFF91731.1| TrmH family RNA methyltransferase [Streptomyces sp. e14] Length = 335 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 10/220 (4%) Query: 70 QLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 Q + R + P +D++ HQGL L+ P + Sbjct: 116 QQFIDNDERVREALQLAAERGGINLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPED 174 Query: 129 -------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L++ LD V DP N+GA++RS AF G++ +R + +A K+++ Sbjct: 175 LADAAADAGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSA 234 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGL 240 G P R +NLT AL++ G +GL++D + L + +++G+EGKGL Sbjct: 235 GTAARTPVARATNLTRALEQYQKAGLTVVGLAADGEAELGDLDALEGPVVIVVGSEGKGL 294 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ET + MPG ++LN AA + LY Sbjct: 295 SRLVGETCDVRVRIPMPGGAESLNAGVAAGIVLYEAARRR 334 >gi|296122016|ref|YP_003629794.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces limnophilus DSM 3776] gi|296014356|gb|ADG67595.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces limnophilus DSM 3776] Length = 271 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 106/265 (40%), Gaps = 28/265 (10%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-------------------- 84 +++G H VSA ++ +L + + D Sbjct: 7 NHNRSWIWGRHLVSATIHAKYWIPLELHYDSHRFSPHDPLGDPIVGDFPLGDSIEEAHST 66 Query: 85 --ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMV 137 NL ++ V + +++ + HQGLA + + LL++ Sbjct: 67 SLKNLCEAVGIQLVASTADQLSRLI-RAEDHQGLAARMPEFPYADFEGLFQAQLPALLVI 125 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD + D N+GAI+R A A GI+ ++ ++ A+S++GA+ +P R+ L Sbjct: 126 LDGIQDSFNLGAIIRCAEALGAGGIVLPEKGQSGVNSQAARSSAGAVNFLPIYRVPALDR 185 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 A+ ++ S G + + + S++ L + + LI+G EGKG+ + M Sbjct: 186 AIDQLKSRGMKILAATEKSEQSLWNVVIPAPLCLIIGNEGKGVSSALLSACDIQVRIPMA 245 Query: 258 GIIKALNVSNAAAVALYITQNHFAK 282 G +LN + AA + L Q K Sbjct: 246 GQTSSLNAAVAAGILLAEIQRQSLK 270 >gi|289741955|gb|ADD19725.1| SPOU rRNA methylase family protein [Glossina morsitans morsitans] Length = 388 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 46/306 (15%), Positives = 98/306 (32%), Gaps = 30/306 (9%) Query: 1 MNLISKKKSEKIFSLKDS--HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS 58 + ISK + I + K+ + KL M + + + + + + G + Sbjct: 77 LEKISKSE---IINDKELGFEFTKLSLTDSRLTTMMTTVRSKKRRDKNRQIVIEGRRLIL 133 Query: 59 AALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115 AL R L + ++ LA + + + VP + LA Sbjct: 134 EALECGLRLKTILFSQRDQLAAIKEEVTVLQKAKQTEIYKVPHHDLKIWSTLTTPPGVLA 193 Query: 116 LETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 + P + +V D++ DP+N+G+I+R+ A C ++ T Sbjct: 194 IFERPCSQHVRKTLSKVPPPLPITVVCDNIRDPNNLGSIIRTCAALPCLQVVITIGCCDP 253 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---- 227 + + G I + + + + + + + Sbjct: 254 WESKSLRGGCGGHFRIQIHDDVHWEEVPLVIPAELADNCWVFIAENNISKSAGLTNVLDY 313 Query: 228 --------KIALILGAEGKGLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVAL 273 +I+G E G+ + + H+ + I +LNV++A + L Sbjct: 314 TNIEQTGSHSVVIIGGESHGVSTEAYQFMQTVGNRGRCLHIPVAEGIDSLNVASALTLIL 373 Query: 274 YITQNH 279 Y + H Sbjct: 374 YELRKH 379 >gi|300722282|ref|YP_003711566.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297628783|emb|CBJ89361.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] Length = 357 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 52/271 (19%), Positives = 84/271 (30%), Gaps = 11/271 (4%) Query: 17 DSHYAKLRRNHRDY--KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 L+ +H K Q R + +YG + A N I + Sbjct: 87 RPEEESLKPDHGGISGKSYIDPEQLRRQRLEETR--IYGENACLAMFQNRPDAIVRAWFV 144 Query: 75 KNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDA 128 ++ R + V Q + K G E H G+ L Sbjct: 145 QSVTPRFRNALKWMAANRKAYHVVDDQELAKASGTE-HHGGVCFLIKKRNGLGVETYLQQ 203 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 ++ L++V +PHN+GAI+RS F G++ A + + GA Sbjct: 204 APAKDCVLALENVGNPHNLGAIMRSCAHFGVQGVVLQDTAMLESGAAVRTAEGGAEHIKG 263 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + S L Q +K+ L+LG E GL E Sbjct: 264 IDADGFTDTLNKFRNEGYTIVTTSSHKGSTALAQATLPEKMVLVLGQESDGLSDSIWEDG 323 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G +++LNVS A + L Sbjct: 324 DIRLSIGGTGRVESLNVSVATGILLAEWWRQ 354 >gi|170017894|ref|YP_001728813.1| rRNA methylase [Leuconostoc citreum KM20] gi|169804751|gb|ACA83369.1| rRNA methylase [Leuconostoc citreum KM20] Length = 253 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 65/252 (25%), Positives = 118/252 (46%), Gaps = 13/252 (5%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKT 95 K + + F+YG + +L +++I ++ ++ + ++ Sbjct: 2 KREQGTADQAEFVYGHYASVESLK-GTQEINKVWLQTGLQDKIRNEITQLAKKRGLVIQQ 60 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIG 148 P +D++ HQG+ L A T+D + ++LD + DPHN+G Sbjct: 61 APKSKLDELTD-GGNHQGVVLSVAAFAYATVDDLFDFADAHHEAPFFLILDGIEDPHNLG 119 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +ILR+A A GII KR + +A +AK ++GA+EH+P R++NL + + ++ G Sbjct: 120 SILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEHVPVARVTNLVNVVGELKDRGVW 179 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + K AL++G EGKG+ P ++ SM + M G +++LN S A Sbjct: 180 VFGTDMSGDDYRRWDAK-GPTALVIGNEGKGISPLLKKKVDSMLTIPMVGHVQSLNASVA 238 Query: 269 AAVALYITQNHF 280 A++ +Y N Sbjct: 239 ASLLIYQGFNSR 250 >gi|87312089|ref|ZP_01094195.1| putative rRNA methylase [Blastopirellula marina DSM 3645] gi|87285185|gb|EAQ77113.1| putative rRNA methylase [Blastopirellula marina DSM 3645] Length = 269 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 61/277 (22%), Positives = 101/277 (36%), Gaps = 18/277 (6%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I S++ + K Q R Q + GV + AL + Sbjct: 3 ERITSVQ----------NPRIKAASKLRQ-RRARQQQGRTIIDGVREIDRALATG-FPLL 50 Query: 70 QLLATKNALARLD-----WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 +L L + + + + +K+ E +A+ P Sbjct: 51 ELFVCDELLVGEEAAALRQRISQDRELNLFEITRDVCEKLSFGERAEGVIAVANYPDTML 110 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 D + + L++VL+ V P N+GAILR+A A D +I + + +++ G + Sbjct: 111 DHDQLSDRPLIVVLEGVEKPGNLGAILRTADAVGADCLIAADARTDIFNPNAIRASLGTI 170 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + L + + G Q + EQ ALILG+E +GL + Sbjct: 171 F-AVPTFEATTAETLAFLRAAGAQMFAARVEGAVSYEQVELIGPTALILGSEAEGLSDRW 229 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + L M GI +LNVS AAV LY A Sbjct: 230 LADDVTNIRLPMRGIADSLNVSTTAAVLLYEANRQRA 266 >gi|332299037|ref|YP_004440959.1| RNA methyltransferase, TrmH family, group 3 [Treponema brennaborense DSM 12168] gi|332182140|gb|AEE17828.1| RNA methyltransferase, TrmH family, group 3 [Treponema brennaborense DSM 12168] Length = 262 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 88/255 (34%), Gaps = 26/255 (10%) Query: 50 FLYGVHTVSAALNNPSRK------IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + G H V + + + + A + A P K +DK Sbjct: 5 IVTGFHAVEEYVRRAAVQEKQPAALQLFYAAPGPRVKKILAAAEKAGIPCKKTESGELDK 64 Query: 104 IVGKEAV----HQGLALETAPLLSPTLDAVRN--------------SQLLMVLDHVNDPH 145 + +V H+G+ L + TL+ + Q ++VLD V DPH Sbjct: 65 LTASLSVTAREHRGVVLRVSGAAEETLNRIDFDGYVASVSAPGAAERQTVVVLDSVTDPH 124 Query: 146 NIGAILRSAVAFSCDGIITTKRY--SPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 NIGAILRS + +R + + + AS I I++ Sbjct: 125 NIGAILRSCDQLGVSLAVLPERRGVKNVDGSEVISRASAGASAWVPISIASNLVRAVGQL 184 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 I + P+ + LI+G+EG G+ E + + G + +L Sbjct: 185 KAAGFWIYGADSGGTPVTDVDFPPRTVLIMGSEGSGISRLLAEQCDRIVSIPTCGKLDSL 244 Query: 264 NVSNAAAVALYITQN 278 NVS AA + LY Sbjct: 245 NVSVAAGILLYDIYR 259 >gi|332882239|ref|ZP_08449869.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679862|gb|EGJ52829.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 242 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 40/252 (15%), Positives = 89/252 (35%), Gaps = 21/252 (8%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K +Q + K ++ ++ + G +++ L L+AT+ + Sbjct: 6 QVKLIQKLHHK-KYRNELNLFIVEGKKSINEFLQAGYTP-QLLIATEAFTTSVPQHL--- 60 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + V + K+ + +GLA+ P L +++ LD+V DP N+G Sbjct: 61 ----ITPVSKDELRKVSTLQNPDEGLAVFQQPKHKGIL----QEGVIVALDNVQDPGNLG 112 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R F + ++ + + + ++ G+L + + + Sbjct: 113 TIIRLCDWFGVETLLCNTQTVDCYNPKVVQATMGSLTRVAVHYLDL-----AAFLTTTAL 167 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH---MPGIIKALNV 265 + + L LILG E G+ + + + + + ++LNV Sbjct: 168 PVYTMDLEGENLYTATFPKDCILILGNEANGISSEVRALSNEVITIPRFSQHQRTESLNV 227 Query: 266 SNAAAVALYITQ 277 + A A+ L Sbjct: 228 AMAGAIILSEVM 239 >gi|291297886|ref|YP_003509164.1| RNA methyltransferase TrmH family, group 3 [Stackebrandtia nassauensis DSM 44728] gi|290567106|gb|ADD40071.1| RNA methyltransferase, TrmH family, group 3 [Stackebrandtia nassauensis DSM 44728] Length = 339 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 112/270 (41%), Gaps = 12/270 (4%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--P 64 K K K+ A + + + +S+ L G + V AL P Sbjct: 54 PKKTKWKQEKERRAAAAEGRAPKAGRPKRPSTQSKRRDSDGVDVLVGRNPVVEALRAHVP 113 Query: 65 SRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 ++ + T+ + R + V +D++ + A+HQGL L+ P Sbjct: 114 GTALYVVNGTELDDRIRESIRLAGNRGISILEVSKSELDRLC-QGALHQGLGLQVPPFHY 172 Query: 124 PTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 LL+ LD V DP N+GA +RSA AF G++ +R + +A Sbjct: 173 EEYADVLAAAGEHPQPPLLVALDGVTDPRNLGATIRSAAAFGAHGVVVPQRRAAGMTATA 232 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGA 235 ++++GA +P + +NLT A+Q+ G GL +D + L D + L++G+ Sbjct: 233 WRASAGAAARLPIAKATNLTRAIQQAQQAGLLVAGLDADGEIDLFDLPAAVDPLMLVVGS 292 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNV 265 EG+GL E+ + + +++LN Sbjct: 293 EGRGLSRLVGESCDLRVRIPIASAVESLNA 322 >gi|270284654|ref|ZP_05966454.2| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium gallicum DSM 20093] gi|270276599|gb|EFA22453.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium gallicum DSM 20093] Length = 348 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 74/295 (25%), Positives = 130/295 (44%), Gaps = 27/295 (9%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN- 63 + K ++++ R+ R ++ + + ++ TS ++L + G + V AL Sbjct: 38 TPKAEDRVYHKAYKAKKAAERHTRADPRLAARRRVAKFTSDSDDLVI-GRNAVLEALRVS 96 Query: 64 --PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 S + R + +D+I K HQG+ ++ P Sbjct: 97 VPASTLYVAARLEHDDRTREIMRLAGIQGLHILEADRLEMDRIA-KGGHHQGVIMKAQPF 155 Query: 122 LSPTLD---------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 +L+ + L + LD V DP N+GA++RSA AF + Sbjct: 156 QYSSLNELADRAERKARAMQEASNESARINARPLFIALDGVTDPQNLGAVIRSAAAFGAN 215 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I +R S S +A K ++GA H+P R+ NLT A++ + G+ +GL K + Sbjct: 216 GVILPERRSASVTAAAWKVSAGAAAHMPIARVVNLTKAIEGLKERGYYAVGLDGSGSKEV 275 Query: 221 EQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q D + ++LG+EGKGL T+E +A + M ++++LN S AA + LY Sbjct: 276 GQTGFETDPLIVVLGSEGKGLSRLTREACDCIAGIPMTSMVESLNASVAAGITLY 330 >gi|149200224|ref|ZP_01877246.1| RNA methyltransferase, TrmH family, group 3 [Lentisphaera araneosa HTCC2155] gi|149136666|gb|EDM25097.1| RNA methyltransferase, TrmH family, group 3 [Lentisphaera araneosa HTCC2155] Length = 197 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 74/153 (48%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + +++LD V DPHN+GA +R+A D +I K + + + + G + Sbjct: 44 KKTPFVLILDGVQDPHNLGACIRTANGAGVDAVIIPKDNAAPITDTVMSVSCGGASNTAI 103 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R+ N+ ++K+ G G S + + L +AL++G+EGKG+R T+E Sbjct: 104 FRVVNIARTMEKLKKIGVWIAGTSDKADQDLYNSDLKGPVALVMGSEGKGMRRLTEEKCD 163 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + M G + LNVS A V LY A+ Sbjct: 164 FLLTIPMGGTVPCLNVSVATGVCLYEIVRQRAE 196 >gi|255009330|ref|ZP_05281456.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12] gi|313147083|ref|ZP_07809276.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135850|gb|EFR53210.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 253 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 93/255 (36%), Gaps = 16/255 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K ++ + G V L L AT L Sbjct: 8 RVKYIRSLELK-KNRKEERVFLAEGPKLVGDLL--GHFPCKFLAATSEWLREHSAVKA-- 62 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V V P+ + + ++ Q LAL P + +RNS L + LD + DP N+G Sbjct: 63 --VEVIEVGPEDLSRASLLKSPQQVLALFEQPKYEIDTEVIRNS-LCLALDDIQDPGNLG 119 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I + + ++ G + + I+ + +H G Sbjct: 120 TIIRLADWFGIEHIFCSPNTVDVFNPKAIQATMGGIARVKVHYIALP----ELIHVLGNV 175 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264 + + K + ++ + +++G EG G+ + ++ ++ ++LN Sbjct: 176 PVYGTFLDGKNMYEQPLSKNGIIVMGNEGNGIGAEVEKLVNRKLYIPNYPQERETSESLN 235 Query: 265 VSNAAAVALYITQNH 279 V+ A A+ + Sbjct: 236 VAIATAIVCAEFRRQ 250 >gi|149926571|ref|ZP_01914832.1| putative RNA methyltransferase [Limnobacter sp. MED105] gi|149824934|gb|EDM84148.1| putative RNA methyltransferase [Limnobacter sp. MED105] Length = 273 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 91/285 (31%), Gaps = 28/285 (9%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 I ++E++ + L NH G+H L+ Sbjct: 9 QIESAQNERLKAAIKL----LSSNHAL--------------RNSGLAAAEGLHLAETLLH 50 Query: 63 NPSRKIFQLLATKNALARLDW-------DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115 P I + ++ L + +W D + K+ + Sbjct: 51 LPGAHIESVWIPQSLLNKPEWLTMSALSDVLENGEVRCLVLSDTLYSKLSKLNTPTGPMI 110 Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 S T+D ++ LL D + DP N+G +LR+ A + + + S Sbjct: 111 FFKPVNASATIDLKQDIALL---DGIQDPGNVGTLLRNCAAAGVQQVALSDHSAWVWSDK 167 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + ++ GA + +L AL S + L + G+ Sbjct: 168 VLRAGMGAQFGLQLYTELDLLQALSAAKSKIPVRVTSLHPKSVDLFNADLKPAGVWVFGS 227 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 EG+G+ + A+ + I++LNV +++AV L+ Sbjct: 228 EGQGVSQAWLDRASEHIRIPQSKTIESLNVGSSSAVCLFEQFRQR 272 >gi|319892126|ref|YP_004149001.1| rRNA methylase [Staphylococcus pseudintermedius HKU10-03] gi|317161822|gb|ADV05365.1| rRNA methylase [Staphylococcus pseudintermedius HKU10-03] Length = 248 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 106/277 (38%), Gaps = 30/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ KI + +K + + L G H + A Sbjct: 1 MEAITSIQNPKIK-------------------NYNKLKKKKERDKQGLAILEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + QL + + + V + + + + G Sbjct: 42 VES-QIMVTQLFMIEPSRVPTELIEAAE---EVYEITQKVAETLSGTVTPQG-----IFA 92 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 ++ V ++ +++LD + DP N+G ++R+A A D I+ TK + + +++ Sbjct: 93 IIEKPQVDVTAAKQVLILDRIQDPGNLGTMIRTADAAGLDLIVMTKGTADVYQDKVLRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ HIP + +++ + + T + + + D ALILG EG+G+ Sbjct: 153 QGSVFHIPIQYVDDMSAWMSSFKGPIYGTALQDA--TTYHQVASQQDTFALILGNEGEGV 210 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 T + + G ++LNV+ AA + ++ + Sbjct: 211 AMDLLAHTTQNLIIPIYGQAESLNVAVAAGILMFYLK 247 >gi|237748844|ref|ZP_04579324.1| RNA methyltransferase [Oxalobacter formigenes OXCC13] gi|229380206|gb|EEO30297.1| RNA methyltransferase [Oxalobacter formigenes OXCC13] Length = 260 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 97/259 (37%), Gaps = 9/259 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ Y++++ S + L G+H + L + + +++ + Sbjct: 6 SKDNPQYRELKQLASSSAARRKSGQSVLDGIHLCQSYLEHIDVPLLCVVSEASQHHPEVA 65 Query: 84 DA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 + + E L L P+ D +Q ++LD Sbjct: 66 AIMGECERRGGECLLLTDSLFHPLSQVENGIDILFLIVTPVHE---DCPELTQTGVLLDR 122 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G+ILRSA A + + + S + ++ GA + +L ++ Sbjct: 123 IQDPGNLGSILRSAAAAGIRQVFCSPGTAAVWSPRVLRAGMGAHFLLEVFEDVSLEKLIE 182 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + I + +KK + N +A +LG EG+G+ + A+ + G + Sbjct: 183 ---TAKIPVIATTPYTKKTIYDFDLNRPVAWLLGHEGRGVDERLMVMASDKLVIPHMGAM 239 Query: 261 KALNVSNAAAVALYITQNH 279 ++LNV+ AAV + Sbjct: 240 ESLNVAACAAVCFFEQVRQ 258 >gi|150005579|ref|YP_001300323.1| putative tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482] gi|149934003|gb|ABR40701.1| putative tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482] Length = 251 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 96/256 (37%), Gaps = 16/256 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K + + + G V L L+AT N L + Sbjct: 6 KIKYIRSLELKKK-RKEEQVFVAEGHKLVGDLL--GHFPCKLLIATSNWL----KMNHSA 58 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + V + + + ++ + LA+ P + +++S L + LD V DP N+G Sbjct: 59 TANEIIEVTQEELSRASLQKTPQEVLAVFVQPSYDLNPEVIKSS-LCLALDDVQDPGNLG 117 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I + + + ++ GAL + S Q + S Sbjct: 118 TIIRLADWFGIEHIFCSTGTADVYNPKTVQATMGALARVKVHYCSLP----QLIESLTDI 173 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264 + + + + E + +++G EGKG+ P+ ++ ++ ++LN Sbjct: 174 PVYGTFLNGNIIYTESLSAHGLIVMGNEGKGVSPEVEKLINKKLYIPNYPQERETSESLN 233 Query: 265 VSNAAAVALYITQNHF 280 V+ A AV + Sbjct: 234 VAIATAVVCSEFRRRL 249 >gi|148377354|ref|YP_001256230.1| rRNA methylase [Mycoplasma agalactiae PG2] gi|148291400|emb|CAL58784.1| rRNA methylase [Mycoplasma agalactiae PG2] Length = 243 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 89/254 (35%), Gaps = 23/254 (9%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K+++ E + G H V AL +L + + Sbjct: 9 QNPKIKQLRKIFND----KNSEFFIVEGYHLVEEALKEN-----IVLELYESDYKTAIYD 59 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 N V ++ + + +AL L ++ LD+V DP Sbjct: 60 NS------ILVSQNVLEALTKTKNPEGIVALCRKKPNFEQL-----GNKVVFLDNVQDPG 108 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R A +F D +++ + + ++ A + + Y + L+ + Sbjct: 109 NVGTIIRVAKSFGFDTVVSNVNFYNDKVIRSSQGALFTVNLVNYNYDNLTNILLKYKQNG 168 Query: 206 GFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 S +E+ +DK ++ G EG G+ + A + ++ + ++LN Sbjct: 169 FKIYATSLDKSSVEIEKVKFESDKAVIVFGNEGSGISSALADIADMLIYVPI--NFESLN 226 Query: 265 VSNAAAVALYITQN 278 V+ A + LY Sbjct: 227 VAICAGIVLYEANK 240 >gi|218283694|ref|ZP_03489655.1| hypothetical protein EUBIFOR_02249 [Eubacterium biforme DSM 3989] gi|218215683|gb|EEC89221.1| hypothetical protein EUBIFOR_02249 [Eubacterium biforme DSM 3989] Length = 147 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 43/144 (29%), Positives = 76/144 (52%) Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 +D + DPHN+GAILR+ DG+I TK S + + K+++GA +P ++NL+ Sbjct: 1 MDGIQDPHNVGAILRTCDCAGVDGVILTKHNSCGLTPTVVKASTGAAYTVPVSIVTNLSQ 60 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 L+ + G+ +G + + + + L++G+EG+G+ ++ M +L M Sbjct: 61 TLRNLKQEGYWVVGTDMKDAREYREGMYDSPTVLVIGSEGQGISNLVKKQCDYMVYLPMV 120 Query: 258 GIIKALNVSNAAAVALYITQNHFA 281 G I +LN S AAA+ +Y N Sbjct: 121 GSITSLNASVAAAILMYEVYNQRN 144 >gi|94268732|ref|ZP_01291270.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1] gi|93451488|gb|EAT02319.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1] Length = 302 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 65/256 (25%), Positives = 104/256 (40%), Gaps = 24/256 (9%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQT 100 QPE ++G+H V+ L + +L + + H P + Sbjct: 41 DQPEASLVWGIHPVTELLRRRPGLVRELYLAGGRDDGRVAAIVELAASHRIP---LDRAG 97 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL-----------------DHVND 143 + E HQG+A AP +L + + D + D Sbjct: 98 L-PPAAAELPHQGVAARVAPPSPLSLAELLQRLPALGPEPASSPAASPPPLLLVLDSLQD 156 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GA+LRSA AF DG+I K S S + K+A+G + R +NL AL + Sbjct: 157 PHNLGAVLRSAAAFGVDGVILPKDRSAPLSGTVLKAAAGTAALLDICRTTNLAGALGTLK 216 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 GF G S ++ L + L+LG E KG+RP ++ + + + +++L Sbjct: 217 KHGFWIYGASGEASGNLYETDFTGPTCLVLGNEQKGIRPLLKKHCDFLLAIPLAAGVESL 276 Query: 264 NVSNAAAVALYITQNH 279 NVS AA + L + Sbjct: 277 NVSVAAGIMLVEIRRR 292 >gi|118475710|ref|YP_891491.1| RNA methyltransferase [Campylobacter fetus subsp. fetus 82-40] gi|261886292|ref|ZP_06010331.1| RNA methyltransferase [Campylobacter fetus subsp. venerealis str. Azul-94] gi|118414936|gb|ABK83356.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter fetus subsp. fetus 82-40] Length = 226 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 87/224 (38%), Gaps = 5/224 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG L K+ + K+ + + ++ + + V + + + + Sbjct: 2 IIYGKQLFLHLLEKHKEKLINIYLAKD-IEKDIFNKIVKSGVKIHKVDNKK-AQALARGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG E +L+ ++ L+VL ++D NIG+I+R+ A G+I + + Sbjct: 60 NHQGFLAEVCEFEFASLNEIKKQDFLVVLYGLSDVGNIGSIVRTTYALGGGGVIMISKSA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 E AS A + I + + +L I S K + K Sbjct: 120 SME---GIIRASSAAAYELPITLVSDGLSLLNELKQLGFKIYGSDAKGKNPSECKFGKKT 176 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L++G+EG+G+ K E ++M +LNVS A + Sbjct: 177 VLVMGSEGEGIPRKALEKCDENLGINMREGWDSLNVSVAFGILF 220 >gi|291005305|ref|ZP_06563278.1| putative tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 270 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 103/250 (41%), Gaps = 4/250 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + + +++ + GV V L + LL + + L D P Sbjct: 20 DFRDLSTADRRPDRPGGRGLVIAEGV-VVVERLVASPYPVRALLGVRRRIEALA-DLLAP 77 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P P + +VG LA+ V S+ L VL+ V D N+G Sbjct: 78 LDVPAYVAEPDVMASVVGFHLNRGVLAVADRAPELTAEHLVATSRRLAVLEGVGDHENLG 137 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A+ R+A A DG++ + S + + G + +P+ R+ + D L + GF+ Sbjct: 138 ALFRNAAALGVDGVLLGEGCSDPLYRRSVRVSMGHVLRVPFTRLKSWPDDLDLLRDGGFR 197 Query: 209 TIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 L+ + +E + +A++LG+EG GL + A + M G + +LNV+ Sbjct: 198 VAALTPRADAVSLREAALDSGPVAVVLGSEGPGLTEQAIAAADVAVRIPMAGGVDSLNVA 257 Query: 267 NAAAVALYIT 276 A A+A + Sbjct: 258 TAGAIAFHAM 267 >gi|134097236|ref|YP_001102897.1| putative tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|133909859|emb|CAL99971.1| hypothetical tRNA/rRNA methyltransferase Rv0881 [Saccharopolyspora erythraea NRRL 2338] Length = 287 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 103/250 (41%), Gaps = 4/250 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + + +++ + GV V L + LL + + L D P Sbjct: 37 DFRDLSTADRRPDRPGGRGLVIAEGV-VVVERLVASPYPVRALLGVRRRIEALA-DLLAP 94 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P P + +VG LA+ V S+ L VL+ V D N+G Sbjct: 95 LDVPAYVAEPDVMASVVGFHLNRGVLAVADRAPELTAEHLVATSRRLAVLEGVGDHENLG 154 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A+ R+A A DG++ + S + + G + +P+ R+ + D L + GF+ Sbjct: 155 ALFRNAAALGVDGVLLGEGCSDPLYRRSVRVSMGHVLRVPFTRLKSWPDDLDLLRDGGFR 214 Query: 209 TIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 L+ + +E + +A++LG+EG GL + A + M G + +LNV+ Sbjct: 215 VAALTPRADAVSLREAALDSGPVAVVLGSEGPGLTEQAIAAADVAVRIPMAGGVDSLNVA 274 Query: 267 NAAAVALYIT 276 A A+A + Sbjct: 275 TAGAIAFHAM 284 >gi|296118312|ref|ZP_06836893.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes DSM 20306] gi|295968870|gb|EFG82114.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes DSM 20306] Length = 266 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 97/262 (37%), Gaps = 10/262 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 + ++ N+ + S + G H V + L + + ++ NAL Sbjct: 6 PHDPRLDDIRDLNKSDK--SGEGLVIAEG-HLVVSRLVSSRFPVRCIVGFANALKHYVET 62 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 P P+ V T+ ++VG + +A +A+ +++ ++VL+ V D Sbjct: 63 YGEP-GCPMYEVDRATLAEVVGFDMHRGLVAAADRVAPLEVSEAISDAKTVVVLEGVGDH 121 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIG++ R+A D ++ + + + G + +P+ R Q+ Sbjct: 122 ENIGSLFRNAAGMDVDAVLLGAGAADPLYRRSVRVSMGHVLRLPFARFDGGFTTWQRNLD 181 Query: 205 WGFQTIGLSSDSKKPLEQEIK------NDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 E +DK+AL++GAEG GL A + M Sbjct: 182 LLADAGFHLVSLTPDNEAVHLAEALAGHDKVALMVGAEGPGLTEHAMRATHVRARIPMAE 241 Query: 259 IIKALNVSNAAAVALYITQNHF 280 + NV+ AAA+A Y Q Sbjct: 242 GTDSFNVATAAAIAFYERQRSL 263 >gi|51892235|ref|YP_074926.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863] gi|51855924|dbj|BAD40082.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863] Length = 273 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 88/258 (34%), Gaps = 8/258 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 H ++ + ++ R + + GV V AL + L + A + Sbjct: 10 PKHALVRQARELARERRAREESGLAHMEGVRLVEEALAAGVEVAYLLYTPELAERPRGAE 69 Query: 85 A---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 P+ V P+ +++ + LS TLD + L++VLD + Sbjct: 70 LLRTAAARGVPLHPVTPEALERAADTRTPQGVVG--VFRPLSRTLDDLGPG-LVLVLDGL 126 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G +RS A G + + + + DAL Sbjct: 127 QDPGNLGTAIRSLEAMGGGGAVVAG--GVDPYNPKVVRGAMGSLFRLPVVKRPIGDALAG 184 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + G + + A+++G+E G P+ + A + + M G + Sbjct: 185 LRAAGRRIYLAEAGGALAPWAVDLARGAAVVVGSEAAGPSPEARALADGVVSIPMAGPTE 244 Query: 262 ALNVSNAAAVALYITQNH 279 +LN AA++ Y Sbjct: 245 SLNAGVAASLLAYEAMRQ 262 >gi|294085941|ref|YP_003552701.1| TrmH family RNA methyltransferase [Candidatus Puniceispirillum marinum IMCC1322] gi|292665516|gb|ADE40617.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Puniceispirillum marinum IMCC1322] Length = 312 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 95/303 (31%), Positives = 147/303 (48%), Gaps = 40/303 (13%) Query: 1 MNLISKKKSEKIFSL-KDSHYAKLRRN-HRDYKKMQSFNQKSRHTSQ------------- 45 M+ S KK K+ S K+ + ++R + + ++ Sbjct: 1 MSAKSSKKRPKVKSQGKNPLFDPVKRAADASGRSASNAPRRGAPRRGAPARQNDDSQIKA 60 Query: 46 -----PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---------DANLPHPF 91 FL+G H V+AAL NP R+I L T ++ D A LP Sbjct: 61 APKPPQGGYFLWGRHAVAAALVNPDRRIAALYVTDDSRDSFDEMWQTLAMDRQAELPDAR 120 Query: 92 PVKTVPPQTIDKIVGKEA---VHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVND 143 P++ + +D I G ++ VHQG+A PL +P LD +++LD ++D Sbjct: 121 PIE---RRRLDGIGGHDSEKVVHQGMAAAVWPLDAPHLDDFIADIADKPVRIIMLDQISD 177 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GAILRSA AF CD IITT+R++P E+ LA++A+GALEHIP IR+ NL A++ + Sbjct: 178 PRNVGAILRSARAFGCDAIITTQRHAPEENGALARTATGALEHIPIIRVVNLARAVESLQ 237 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 GL+ D + ++A++LGAEG GLR ++E + + + +L Sbjct: 238 DHDITVAGLAGDGTMDVGALADFPRLAIMLGAEGPGLRRLSREHCDHLVRIDIAPDADSL 297 Query: 264 NVS 266 NVS Sbjct: 298 NVS 300 >gi|260911434|ref|ZP_05918024.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472 str. F0295] gi|260634433|gb|EEX52533.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472 str. F0295] Length = 257 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 84/258 (32%), Gaps = 16/258 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 K +++ K +H G V L K+ A L Sbjct: 6 AKIKYIRALEAK-KHRDAEGVFVAEGPKVVGELLATMPAKLLVATPQWQAP------VAL 58 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL--DAVRNSQLLMVLDHVNDPH 145 + TV + K+ A Q +A+ + D V ++L ++LD V DP Sbjct: 59 HASTELITVNDDELQKLSFMRAPQQVMAVFPKFSQQGDVLKDCVETNELTLMLDGVQDPG 118 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R A F ++ + + + + ++ G++ + Sbjct: 119 NLGTIVRLADWFGIRHVVCSLDTADVYNPKVVQATMGSIARVKVSYTPLE---PLLDALP 175 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIK 261 + + + + +++G EGKGL ++ + + Sbjct: 176 PSFPVYGTLLDGDNIYGQQLCAHGIIVMGNEGKGLSTSVRQRVNHKLLIPHFATGEQRAE 235 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV+ A A+ + Sbjct: 236 SLNVAIATAIVCAEFRRQ 253 >gi|296104254|ref|YP_003614400.1| putative methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058713|gb|ADF63451.1| putative methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 361 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 95/244 (38%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 117 RRQRAEETRVYGENACQALFQSRPECIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDA 176 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L+ V +PHN+GA++RS Sbjct: 177 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGTDDCVLALEDVGNPHNLGAMMRSCA 235 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I ++ DA+++ G+ + SS Sbjct: 236 HFGVKGVLL-QDAALLESGAAIRTAEGGAEHVQPITGDSVLDAIEQFRKAGYSIVTTSSH 294 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + PL + K+ L+LG E GL +A + G +++LNVS A V L Sbjct: 295 AGTPLFKATLPRKMVLVLGQERDGLSDAALSSADLSVSIDGTGNVESLNVSVATGVLLAE 354 Query: 276 TQNH 279 Sbjct: 355 WWRQ 358 >gi|78186184|ref|YP_374227.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273] gi|78166086|gb|ABB23184.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273] Length = 265 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 52/254 (20%), Positives = 105/254 (41%), Gaps = 9/254 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDW 83 + K++ Q+ ++ + G+ TV L + + L+ T LA Sbjct: 10 SRALLKRIARLQQR-KYRDREGLFIAEGLRTVRELLGQMAGADMLDCLICTAEGLAFFPE 68 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVN 142 + +++ G + L + P+ + LL+ LD V Sbjct: 69 SSIYSGSL--FLASEDDFNRVAGTSSPQGVLGVFRQPVFPLPYERPYSGRALLVALDEVQ 126 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N G ILR+A DG++ +A +S++G+L +P+ R +L AL+++ Sbjct: 127 DPGNAGTILRTAAWLGADGLLAGPGTVDLYNAKTVRSSAGSLLGMPHTRAGDLPAALRQL 186 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM---PGI 259 GF+ I S + + ++ L++G E G+ P+ + A + + P Sbjct: 187 QKAGFKVICSSLEGEDFRSGGAWPERTVLVVGNEANGVGPEVRVLADRLVKIPHGRGPAR 246 Query: 260 IKALNVSNAAAVAL 273 +++LN + +AA+ + Sbjct: 247 VESLNAAVSAAILM 260 >gi|314936683|ref|ZP_07844030.1| RNA methyltransferase, TrmH family [Staphylococcus hominis subsp. hominis C80] gi|313655302|gb|EFS19047.1| RNA methyltransferase, TrmH family [Staphylococcus hominis subsp. hominis C80] Length = 246 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 96/277 (34%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ KI + + +K + + + G+H + A Sbjct: 1 MEQITSTQNNKIK-------------------LANKLKKKKERDKTGLALIEGIHLIDEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + + + + + G Sbjct: 42 FKSNIMIKQLFVIEPERTDSRLLEYAKEA----YEINMKVAESLSGTITPQ--GFFAVIE 95 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + +++LD + DP N+G ++R+A A D ++ K + + + +++ Sbjct: 96 KPKHNISKAKQ---VLLLDRIQDPGNLGTLIRTADAAGIDMVVMEKGTADAYQDKVMRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ HIP + Q + + K Q+ AL+LG EG+G+ Sbjct: 153 QGSVFHIPIVTTELNKFIEQFDGPVYGTALENAVSYKNIESQDTF----ALLLGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + + G ++LNV+ A ++ LY + Sbjct: 209 NKELLAHTSQNLIIPIYGKAESLNVAIAGSILLYHLK 245 >gi|28493313|ref|NP_787474.1| tRNA/rRNA methyltransferase [Tropheryma whipplei str. Twist] gi|28572576|ref|NP_789356.1| rRNA methyltransferase [Tropheryma whipplei TW08/27] gi|28410708|emb|CAD67094.1| putative rRNA methyltransferase [Tropheryma whipplei TW08/27] gi|28476354|gb|AAO44443.1| tRNA/rRNA methyltransferase [Tropheryma whipplei str. Twist] Length = 263 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 14/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 + G++ V AL I L+ AL + + + P VP T+D++ Sbjct: 26 IVGINPVYEALRERVPSIKLLIDKSFALKHNPRVSKIMNYSDIPHIFVPRSTLDRLTDL- 84 Query: 109 AVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+AL + L + D V DP N+GAI+RSA AF ++ Sbjct: 85 -PHQGVALLCKSYRPSRAEELLKQTWPRPPLFIACDQVTDPRNLGAIVRSAAAFRASAVL 143 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K S + ++ K+++GA+ +P + NLT + + +G +GL S+SK P+++ Sbjct: 144 IGKNRSARVTPMVWKASAGAVGKLPIAEVGNLTRYIVRFREYGGFVLGLDSNSKTPIDKS 203 Query: 224 IKNDK-----IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K + LI+G+EG G+ ++ + + + +LNVS A ++ALY Q Sbjct: 204 VFLKKEDKRALLLIVGSEGSGISHLVKKHCDELLTIPTDASVDSLNVSVAVSIALYELQR 263 >gi|311278485|ref|YP_003940716.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter cloacae SCF1] gi|308747680|gb|ADO47432.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter cloacae SCF1] Length = 352 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 96/244 (39%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 108 RRQRAEETRVYGENACQALFQSRPECIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDA 167 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L+ V +PHN+GA++RS Sbjct: 168 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQADADDCVLALEDVGNPHNLGAMMRSCA 226 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I ++ +A+++ S G+ + SS Sbjct: 227 HFGVKGVLL-QDAALLESGAAIRTAEGGAEHVQPITGDSVLEAIEQFRSAGYTIVTTSSH 285 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 PL + K+ L+LG E GL +A ++ G +++LNVS A V L Sbjct: 286 EGTPLFKATLPRKMVLVLGQERDGLSDAALSSADLSVSINGTGNVESLNVSVATGVLLAE 345 Query: 276 TQNH 279 Sbjct: 346 WWRQ 349 >gi|183602645|ref|ZP_02964009.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis HN019] gi|219684006|ref|YP_002470389.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|241191611|ref|YP_002969005.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|241197016|ref|YP_002970571.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218063|gb|EDT88710.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis HN019] gi|219621656|gb|ACL29813.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|240250003|gb|ACS46943.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251570|gb|ACS48509.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177745|gb|ADC84991.1| 23S rRNA Gm2251 methyltransferase [Bifidobacterium animalis subsp. lactis BB-12] gi|295794603|gb|ADG34138.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis V9] Length = 331 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 76/304 (25%), Positives = 135/304 (44%), Gaps = 29/304 (9%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ + + R ++ + + + TS ++L + G ++V AL Sbjct: 25 TPKAEDRVYHKAYKAKKQAEKRQRSDPRLAARRRAAHFTSNSDDLVI-GRNSVLEALRVG 83 Query: 65 SRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + R H + +D+I + HQG+ L+ P Sbjct: 84 -VPASVLYVANRIEHDDRTREIVRLAGQHGLNLLEADRLEMDRIA-RSGNHQGVILKADP 141 Query: 121 LLSPTLD---------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +L + L + LD + DP N+GA++RSA AF Sbjct: 142 FQYSSLHELVERAERKARAMEMADSKASRLSARPLFIALDGITDPQNLGAVIRSAAAFGV 201 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +G+I +R S S +A K ++GA H+P R+ NLT A++ + G+ +IGL K Sbjct: 202 NGVILPERRSASVNAAAWKVSAGAAAHMPIARVVNLTKAIEALKERGYYSIGLDGGGSKL 261 Query: 220 LEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + D + ++LG+EGKGL T+E ++A + + +++LN S AA +ALY T N Sbjct: 262 VGETGFETDPLVVVLGSEGKGLSRLTREACDAIASIPITSAVESLNASVAAGIALYATVN 321 Query: 279 HFAK 282 K Sbjct: 322 ARRK 325 >gi|298345950|ref|YP_003718637.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304390347|ref|ZP_07372300.1| RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657555|ref|ZP_07910437.1| RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236011|gb|ADI67143.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304326103|gb|EFL93348.1| RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492027|gb|EFU81636.1| RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 325 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 17/261 (6%) Query: 34 QSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP---SRKIFQLLATKNALARLDWDANLP 88 Q + R+ ++ ++G + V A R K+ Sbjct: 61 QRAAARDRYRPNTAADSEIIFGRNPVVEAAAAGVPLKRLFVSASLMKDERLSKVVQRGAA 120 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----------NSQLLMV 137 ++ P +D+I A A + +D + LL+V Sbjct: 121 SGAKLQECSPADLDRITAGGTHQGIAAEIAAYNYAEVMDLWDRAVTRAKSEPNHPPLLIV 180 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD V DPHN+GA LRSA AF DG+I + S S +A + K ++GA +P + NLT Sbjct: 181 LDQVTDPHNLGATLRSAAAFGADGVIIGEHRSASVTAAVWKVSAGAAAIVPVAKARNLTH 240 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHM 256 ALQ++ + G IGL L + + ++ G+EGKG+ +ET + + + Sbjct: 241 ALQQLQAEGAFAIGLDGGGDVDLPDLKLADQPLVVVTGSEGKGISRLVRETCDQIVSIPI 300 Query: 257 PGIIKALNVSNAAAVALYITQ 277 +++LN + A +ALY Sbjct: 301 DKRMESLNAAVATGIALYQIA 321 >gi|203284425|ref|YP_002222165.1| rRNA methylase [Borrelia duttonii Ly] gi|201083868|gb|ACH93459.1| rRNA methylase [Borrelia duttonii Ly] Length = 244 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 101/237 (42%), Gaps = 11/237 (4%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP----------QTIDKI 104 +++ ++ N + ++ + H + + + Sbjct: 7 NSIIESIKNNKG-LELYISKTSPKTISIEQLARQHNIKIIKINDLTKILGNNNHRGFALK 65 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + + + +N+ L+++LD + DP N GAILR+A F+ D +IT Sbjct: 66 LQNLKDYNTINKNKNLEEYLKEFQHKNNILILILDSIEDPQNFGAILRTAEQFNIDLVIT 125 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 +R S ++ + +++SGA +++ + + N+ + ++ + GF + +I Sbjct: 126 NQRKSVKDNETVLRTSSGASQYVNKLTVPNINNVIRYLKKQGFWIYASDIKGQAINNTKI 185 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++KIALI+G EGKG+ + + + + G I +LNVS + + ++ + Sbjct: 186 TDNKIALIMGNEGKGIHNLLKNNSDFLIKIPTKGKIDSLNVSVSTGILIFEIKRQLN 242 >gi|315654540|ref|ZP_07907446.1| RNA methyltransferase [Mobiluncus curtisii ATCC 51333] gi|315491004|gb|EFU80623.1| RNA methyltransferase [Mobiluncus curtisii ATCC 51333] Length = 325 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 17/261 (6%) Query: 34 QSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP---SRKIFQLLATKNALARLDWDANLP 88 Q + R+ ++ ++G + V A R K+ Sbjct: 61 QRAAARDRYRPNTAADSEIIFGRNPVVEAAAAGVPLKRLFVSASLMKDERLSKVVQRGAA 120 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----------NSQLLMV 137 ++ P +D+I A A + +D + LL+V Sbjct: 121 SGAKLQECSPADLDRITAGGTHQGIAAEIAAYNYAEVMDLWDRAVTRAKSEPSHPPLLIV 180 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD V DPHN+GA LRSA AF DG+I + S S +A + K ++GA +P + NLT Sbjct: 181 LDQVTDPHNLGATLRSAAAFGADGVIIGEHRSASVTAAVWKVSAGAAAIVPVAKARNLTH 240 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHM 256 ALQ++ + G IGL L + + ++ G+EGKG+ +ET + + + Sbjct: 241 ALQQLQAEGAFAIGLDGGGDVDLPDLTLADQPLVVVTGSEGKGISRLVRETCDQIVSIPI 300 Query: 257 PGIIKALNVSNAAAVALYITQ 277 +++LN + A +ALY Sbjct: 301 DKRMESLNAAVATGIALYQIA 321 >gi|212715739|ref|ZP_03323867.1| hypothetical protein BIFCAT_00639 [Bifidobacterium catenulatum DSM 16992] gi|212661106|gb|EEB21681.1| hypothetical protein BIFCAT_00639 [Bifidobacterium catenulatum DSM 16992] Length = 290 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 89/269 (33%), Gaps = 22/269 (8%) Query: 27 HRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 + ++++ ++ + + + G +V L + L + Sbjct: 10 NPKSERVRRVSELADRKGRKRSGRFMVEGPQSVRELLTYHPGLVEDLYVEVESAQPDASF 69 Query: 85 A----------NLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQ 133 A + V V + ++ + V ++ S LD Sbjct: 70 ATPVVAQMAGKAMQSGVYVHKVTHAVMHRMSADAQGVLAVADMQAFLDSSAVLDDFDGHA 129 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH------- 186 ++ V DP N G ++RSA A C ++ + + +S +G+L H Sbjct: 130 MVAAFWQVRDPGNAGTVIRSADAAGCSAVVLVDDCVDMFNPKVVRSTAGSLFHLPILTMG 189 Query: 187 --IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + A+ +G + S + E A++ G E +GL + Sbjct: 190 TDDFFAWCDTHELAVYAADVYGTDSRQPESLTDVIAMPETLAGAKAVLFGNEARGLTKEV 249 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273 E + + + G ++LN+ +++V L Sbjct: 250 LERTDRIVSIPLYGKAESLNLGTSSSVML 278 >gi|242373369|ref|ZP_04818943.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis M23864:W1] gi|242348732|gb|EES40334.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis M23864:W1] Length = 270 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 97/277 (35%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ KI + + R + + G+H + A Sbjct: 25 MEQITSAQNNKIKNANKLKKKRDR-------------------DKTGQALIEGIHLIEEA 65 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + + + + + + + G QG Sbjct: 66 QQSGITIQQLFVIEPDRTDEALLNYANET----YEINMKVAEALSG-TVTPQGFFAVIDK 120 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 A + ++++D + DP N+G ++R+A A D I+ K + + +++ Sbjct: 121 PQYDVSKAQQ----VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPYQDKVMRAS 176 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ HIP + T + + K+ Q AL+LG EG+G+ Sbjct: 177 QGSIFHIPVVTEDLATYMNNFDGPVYGTALENAVSFKEIEAQSTF----ALLLGNEGEGV 232 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + T + + G ++LNV+ A ++ LY + Sbjct: 233 NQELLQQTTKNLIIPIYGKAESLNVAIAGSILLYQLK 269 >gi|171741926|ref|ZP_02917733.1| hypothetical protein BIFDEN_01025 [Bifidobacterium dentium ATCC 27678] gi|283457050|ref|YP_003361614.1| SpoU rRNA methylase family protein [Bifidobacterium dentium Bd1] gi|171277540|gb|EDT45201.1| hypothetical protein BIFDEN_01025 [Bifidobacterium dentium ATCC 27678] gi|283103684|gb|ADB10790.1| SpoU rRNA methylase family protein [Bifidobacterium dentium Bd1] Length = 329 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 71/297 (23%), Positives = 129/297 (43%), Gaps = 31/297 (10%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS--RHTSQPENLFLYGVHTVSAALN 62 + K +++ ++ AK + R + ++ + S+ ++L + G + V AL Sbjct: 25 TPKAENRVYH--KAYKAKKVADRRKMADPRLAARRRVAKFASESDDLVI-GRNAVLEALR 81 Query: 63 NP---SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 S + R H + +D+I + + HQG+ ++ Sbjct: 82 CGVPASTLYIAARIEHDDRTREIVRLAGIHGLHLMEADRLEMDRIA-RSSNHQGIVMKAQ 140 Query: 120 PLLSPTL---------------------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 P +L + L + LD V DP N+GA++RSA AF Sbjct: 141 PFQYSSLAELVERADKKSRAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFG 200 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +G+I +R S S +A K ++GA H+P R+ NLT A++ + G+ +IGL Sbjct: 201 ANGVILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSIGLDGGGDA 260 Query: 219 PLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + D + ++LG+EG GL + T +A + M ++++LN S AA + LY Sbjct: 261 LVGETGFETDPLVVVLGSEGNGLSRLVRSTCDVIAGIPMSSMVESLNASVAAGITLY 317 >gi|70726825|ref|YP_253739.1| hypothetical protein SH1824 [Staphylococcus haemolyticus JCSC1435] gi|68447549|dbj|BAE05133.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 246 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 98/277 (35%), Gaps = 32/277 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ KI + + R + + G+H + A Sbjct: 1 MEQITSAQNSKIKNANKLKKKRDR-------------------DKTGQALIEGIHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + + N D + + + + G QG Sbjct: 42 YQSGIAIKQLFVIEPNRTDEALKDYAEET----FEINMKVAESLSGTI-TPQGFFAVIEK 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + ++ ++++D + DP N+G ++R++ A D I+ K + + +++ Sbjct: 97 PKYDV----KQAKQVLLIDRIQDPGNLGTLIRTSDAAGIDLIVMEKGTADPYQDKVLRAS 152 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ HIP I T + + K+ Q+I AL+LG EG+G+ Sbjct: 153 QGSVFHIPVITADLKTFIAGFNGPVYGTALENAQPYKEVASQDIF----ALLLGNEGEGV 208 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + G ++LNV+ A ++ LY + Sbjct: 209 NKALLNETSQNLTIPIYGKAESLNVAIAGSILLYHLK 245 >gi|227530112|ref|ZP_03960161.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus vaginalis ATCC 49540] gi|227349968|gb|EEJ40259.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus vaginalis ATCC 49540] Length = 288 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 57/269 (21%), Positives = 97/269 (36%), Gaps = 20/269 (7%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y ++ QP + AL + LL K AL R D + Sbjct: 18 YVRLNEAQLFHALEPQPGLFIAESPKVIERALRAGYQPA-SLLIEKKALDRDLADLDHEM 76 Query: 90 PF---------PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----AVRNSQLLM 136 P+ V + + ++ G + LA + + Sbjct: 77 AINQTSGLGQTPIYVVSSELLSQLSGYNLLRGALAAMHRVKRPDLASFLATMPKAHPRIA 136 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VL+ V +P NIGAI RSA A DG++ T + ++ + G + +P+ + Sbjct: 137 VLESVVNPTNIGAIFRSAAALGIDGVVVTSDSADPFYRRASRVSMGTVFQVPWTYVDAKL 196 Query: 197 DAL------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ + Q + DK+A+ILG+EG GLR KT + Sbjct: 197 WQAEGISLLHRLGYKTAAMALRHNTVNIDDPQLDQVDKLAIILGSEGPGLREKTIAQSDF 256 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M + +LNV+ A+A+A + N Sbjct: 257 TIKIPMAPGVDSLNVAAASALAFWELGNR 285 >gi|163839504|ref|YP_001623909.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209] gi|162952980|gb|ABY22495.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209] Length = 300 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 91/281 (32%), Gaps = 30/281 (10%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--------PSRKIFQLLATKNALAR 80 K + + ++ G V AL + + ++ A++ L R Sbjct: 20 RVKDVAKLAGRPS-RTRRRQFLAEGPQAVREALRAHRDCLAAGGNAVVDEVYASRGCLDR 78 Query: 81 LDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 L P ++ + + +A+ + QL+ +L Sbjct: 79 YPDFEELTESGPQIRIASELVLSAMADTVKPQGIIAVCRFVDVPLQEVLAAKPQLIAMLC 138 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N G +LR+A A D +I + + +S G+L H+P + ++ + Sbjct: 139 RVQDPGNAGTVLRAADAAGADAVIFSNSSVDVYNPKAVRSTVGSLFHLPVVLGADPAEVA 198 Query: 200 QKMH------------------SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 ++ ++ S D + P G E +GL Sbjct: 199 RQCRIAGIGVLAADGYGALNLDQLQDESAARSFDQETPESAYPLEQPTLWFFGNEAQGLS 258 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN--HF 280 + E A + + G ++LNV AA V LY + Sbjct: 259 TEELEAADHRVAVPVHGSAESLNVGTAATVCLYASARAQQR 299 >gi|156744301|ref|YP_001434430.1| RNA methyltransferase [Roseiflexus castenholzii DSM 13941] gi|156235629|gb|ABU60412.1| RNA methyltransferase, TrmH family, group 3 [Roseiflexus castenholzii DSM 13941] Length = 248 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 9/210 (4%) Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQ 133 PV+ + + +D+ + +A HQG+ALE LD Sbjct: 39 EIVRLAGEIGVPVERIDRRELDRRL-LDANHQGVALECGDYPYVDLDDCLTLAEERNEPA 97 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL++LDH+ DP N+G +LR+A G+I R + + + +++GA+EH+ + +S Sbjct: 98 LLLMLDHIQDPQNVGTLLRTAEVVGVHGVIIPGRRAAEITPAVVNASAGAVEHLRIVVVS 157 Query: 194 N-LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 N + H+ + + + ++ + + L+LGAEG GL T+E + Sbjct: 158 NLAATIERVQHAGVWVVGVEDDERARVFDEVDLDLPLTLVLGAEGSGLARLTRERCDFLV 217 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFAK 282 L M G I +LNV+ A ++ LY + Sbjct: 218 RLPMRGRIASLNVAVAGSIVLYHAWRVRVR 247 >gi|270284211|ref|ZP_05965753.2| putative 23S rRNA methyltransferase [Bifidobacterium gallicum DSM 20093] gi|270277338|gb|EFA23192.1| putative 23S rRNA methyltransferase [Bifidobacterium gallicum DSM 20093] Length = 305 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 36/277 (12%), Positives = 82/277 (29%), Gaps = 33/277 (11%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---- 84 +K++ + + + + + G V L + L ++ Sbjct: 18 RFKRIMELSNR-KRREKANRFIVEGPQAVRELLQWMPSVVLDLYVAVDSTEPDAAFINPT 76 Query: 85 ------ANLPHPFPVKTVPPQTIDKIVG-------------KEAVHQGLALETAPLLSPT 125 + V + + + G + G Sbjct: 77 IGQCAGLAMQAGAYVHKATVEVMHHVSGDCQGIFAIADLNQCRELMTGNEQADVLDDEQL 136 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + L+ V DP N G ++RSA A C+ ++ + + +S +G+L Sbjct: 137 DRGTARAPLIAAFWQVRDPGNAGTVIRSADAAGCECVVLVGDCVDVFNPKVIRSTTGSLF 196 Query: 186 H---------IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 H L +G + + ++ ++ G E Sbjct: 197 HLPILTMDESTFAQWCHERGMTLVAADVYGTKERSPRTLPVVLAQRTFAQQPTCVLFGNE 256 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +GL E A + + + G ++LN++ +A++ L Sbjct: 257 ARGLETGMLEQADDIVSIPIYGKAESLNLATSASIML 293 >gi|203287959|ref|YP_002222974.1| rRNA methylase [Borrelia recurrentis A1] gi|201085179|gb|ACH94753.1| rRNA methylase [Borrelia recurrentis A1] Length = 244 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 104/238 (43%), Gaps = 13/238 (5%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPP----------QTIDK 103 +++ ++ N +L +K + + H + + + Sbjct: 7 NSIIESIKNNKG--LELYISKTSPKAISIEQLARQHNIKIIKINDLTKILGNNNHRGFAL 64 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + + + +N+ L+++LD + DP N GAILR+A F+ D +I Sbjct: 65 KLQNLKDYNTINKNKNLEEYLKEFQHKNNILILILDSIEDPQNFGAILRTAEQFNIDLVI 124 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 T +R S ++A + +++SGA +++ + + N+ + ++ + GF + + Sbjct: 125 TNQRKSVKDNATVLRTSSGASQYVNKLTVPNINNVIRYLKKQGFWIYASDIKGQAINNTK 184 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 I ++KIALI+G EGKG+ + + + + G I +LNVS + + ++ + Sbjct: 185 ITDNKIALIMGNEGKGIHNLLKNNSDFLIKIPTKGKIDSLNVSVSTGILIFEIKRQLN 242 >gi|291535725|emb|CBL08837.1| rRNA methylases [Roseburia intestinalis M50/1] Length = 294 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 90/261 (34%), Gaps = 26/261 (9%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP----------- 90 +P + AL+ + L+ K+ + Sbjct: 30 FEPKPGIFIAESPKVIERALDAGCVPMSFLMEKKHVETQAKEILARCEKLQSRDLTQKSL 89 Query: 91 --------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 PV + + KI G + L P L +N++ + +L++V Sbjct: 90 VYREDEHVIPVYVAEVEVLAKITGYQLTRGMLCAMYRPTLPSVEQLCKNARRVAILENVV 149 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 +P N+GAI RSA A D ++ T + ++ + G + IP+ Sbjct: 150 NPTNVGAIFRSAAALGMDAVLLTPACADPLYRRASRVSMGTVFQIPWTYFDKNACWPDGA 209 Query: 203 HSWGFQTIGLSSDS-------KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + ++ E+ + +K+A++LG EG GL T + Sbjct: 210 MDVLHKLGYKTAAMALRDDSVSIDDEKMMSEEKLAIVLGTEGDGLADHTIADCDYTVKIP 269 Query: 256 MPGIIKALNVSNAAAVALYIT 276 M + +LNV+ A+AVA + Sbjct: 270 MTHGVDSLNVAAASAVAFWQL 290 >gi|257469642|ref|ZP_05633734.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|317063878|ref|ZP_07928363.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|313689554|gb|EFS26389.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] Length = 255 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 40/274 (14%), Positives = 88/274 (32%), Gaps = 27/274 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M+ I+ ++ I +K K + + + G Sbjct: 1 MDYINSLENNTIKKIKKLKIKK-------------------YREEEQLFIAEGRK----F 37 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+ + +A + V + ++ +E Sbjct: 38 LDFTFEPEIIVFRENYEIAGEIEEKLEKFQCRKIIVSEKVFGQLTSQENSQGV----IVV 93 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + ++VLD + DP N+G I+R A A II TK + + +S+ Sbjct: 94 YPYIKGSLEKLQKNIVVLDKIGDPGNLGTIIRVADAAGFKDIILTKGSVDCYNEKVVRSS 153 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ ++ + + + + ++ A++ G+EG G+ Sbjct: 154 MGSILNMNILYMEEEELITFLKREGYKIEVTALDKDSVSYTEMKLTERNAIVFGSEGDGV 213 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + GI ++LNV+ A + LY Sbjct: 214 SQNFLKMCDEKIIIPIYGIAESLNVAMACGIILY 247 >gi|257791998|ref|YP_003182604.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243] gi|257475895|gb|ACV56215.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243] Length = 279 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 62/277 (22%), Positives = 100/277 (36%), Gaps = 16/277 (5%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I L+D +L Y M + S + AL R + L Sbjct: 3 IIHLEDLDDPRL----AAYSGMTDAQLRDCPDSANGLFIGESRKVIERALAAGVR-MRSL 57 Query: 72 LATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 + L + +D + FPV + + G E LA P L D Sbjct: 58 FMEEKWLDQTMPLVDSLLDGDPDFPVLVATREQFRALTGYEVTRGALAAFERPPLPRVED 117 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + +++ + VL+ V + NIGA+ RSA A D ++ T A+ + G + + Sbjct: 118 LLASARRVAVLEDVTNYTNIGAVFRSAAALGIDAVLVTPSCHDPLYRRAARVSMGTVFQV 177 Query: 188 PYIRISNLTDALQKMHSWGFQTIG-------LSSDSKKPLEQEIKNDKIALILGAEGKGL 240 P+ RI + + E+ DK+AL+LG EG GL Sbjct: 178 PWTRIGSERAWAAEGVPLLRSLGFATAALALSDEAIYLHDERLRACDKLALVLGTEGDGL 237 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P T + M + +LNV+ A+AVA + + Sbjct: 238 APSTIANCDYTVKIPMDHEVDSLNVAAASAVAFWELR 274 >gi|257458363|ref|ZP_05623510.1| RNA methyltransferase, TrmH family, group 3 [Treponema vincentii ATCC 35580] gi|257444237|gb|EEV19333.1| RNA methyltransferase, TrmH family, group 3 [Treponema vincentii ATCC 35580] Length = 274 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 54/272 (19%), Positives = 99/272 (36%), Gaps = 41/272 (15%) Query: 50 FLYGVHTVSAALNN--------------------------PSRKIFQLLATKNALARLDW 83 + G H + L PS ++ A + + Sbjct: 3 IITGFHAIEELLRAVEAQLEKNFSGTKSSQIGKKAGGGKTPSVRLKLFYAKQGPRVKKIL 62 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------------ 131 P++ +DK+V + + + Sbjct: 63 AQAEKLSVPIERRTDAELDKLVAPLPEYLQNHRGIILIDERPQEQSPKLSSDALLAELAS 122 Query: 132 --SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++VLD + DPHN GAI+RSA FS D ++ +R S + ++K ++GA +P Sbjct: 123 REKAFVVVLDSITDPHNTGAIIRSADQFSVDAVVLPERRSAGDFQTVSKISAGAAAWVPL 182 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + +NL ++++ GF G + + DK LI+G+EG G+ + + Sbjct: 183 LYTANLVRTVEELKRNGFWVFGADAQGEPLP-HTKFPDKTLLIMGSEGSGISRLLKTSCD 241 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 S + G + +LNVS AA + +Y + Sbjct: 242 SFTAIPTSGKLDSLNVSVAAGILMYEVRRQQN 273 >gi|145640974|ref|ZP_01796556.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae R3021] gi|145274488|gb|EDK14352.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 22.4-21] Length = 189 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 1/153 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + + LL+VLD V DPHN+GA LR+A A +I K S +++ K A GA E +P Sbjct: 34 NKQNPLLLVLDGVTDPHNLGACLRTADAAGAVAVIVPKDKSAQLTSIARKVACGAAETVP 93 Query: 189 YIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 IR++NL+ + +G + ++ + + Q +AL++GAEG+G+R T+E Sbjct: 94 LIRVTNLSRTLRDLQQNHNIWVVGTAGEATETIYQSKLTGPLALVMGAEGEGMRRLTREH 153 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G + +LNVS A V L+ Sbjct: 154 CDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 186 >gi|41406918|ref|NP_959754.1| hypothetical protein MAP0820 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395268|gb|AAS03137.1| hypothetical protein MAP_0820 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 289 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 98/255 (38%), Gaps = 10/255 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 ++ + S +++ S + GV V L + R L RL + Sbjct: 22 FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPHALL----GTERRLAELRDDLA 77 Query: 90 PFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 PV + ++VG LA + + S+ + VL+ VND N+ Sbjct: 78 GVPVPYYRTSADVMARVVGFHLNRGVLAAARRVPEPGVAELLAGSRTVAVLEGVNDHENL 137 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI R+A D +I + + + G +PY R ++ L+ + GF Sbjct: 138 GAIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKENGF 197 Query: 208 QTIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + ++ + D++A+++GAEG GL P + + M +L Sbjct: 198 RLLAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSL 257 Query: 264 NVSNAAAVALYITQN 278 NV+ AAA+A Y Sbjct: 258 NVATAAALAFYERSR 272 >gi|240850924|ref|YP_002972324.1| 23S ribosomal RNA methyltransferase [Bartonella grahamii as4aup] gi|240268047|gb|ACS51635.1| 23S ribosomal RNA methyltransferase [Bartonella grahamii as4aup] Length = 269 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 65/259 (25%), Positives = 109/259 (42%), Gaps = 6/259 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + + K + +K Q G T+SA L++ LL N L+ L Sbjct: 10 KTDDPRLKAYHNIREKDLVGRQH-QFIAEGKVTLSALLHSKDFSAISLLIVANRLSGLLP 68 Query: 84 DANLPHP-FPVKTVPPQTIDKIVGKEAVHQ---GLALETAPLLSPTLDAVRNSQLLMVLD 139 P P+ VP + +D I G +T P L L + L++VL Sbjct: 69 LLEKTQPLCPIYCVPQKVMDNITGFHVHRGVLGIGKRKTLPSLQSFLQHLPEKALILVLC 128 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 +++ N+G+I R+A AF+ +GII K + ++GA +PY + +++ D + Sbjct: 129 GISNHDNMGSIFRNAAAFASNGIIVDKTSCDPLYRKSIRVSAGAALKVPYTQNADINDII 188 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + F LS + L+Q K ++ALI G EG GL + + + M Sbjct: 189 AALKDKNFHLYALSPSASHTLKQANKTKRMALIFGTEGDGLPTHILQQS-KTLRIPMTNG 247 Query: 260 IKALNVSNAAAVALYITQN 278 +LNV+ A+ +AL N Sbjct: 248 FDSLNVATASGIALAHFIN 266 >gi|238060046|ref|ZP_04604755.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149] gi|237881857|gb|EEP70685.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149] Length = 297 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 95/280 (33%), Gaps = 23/280 (8%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 I+ ++I DY+ + ++R G + AL Sbjct: 29 QITDPDDDRI---------------ADYRALTDVELRTRWEPPHGLFIAEGELVLRRALR 73 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 L+ K R+D A+L PV P +++ G LA Sbjct: 74 AGYPARSFLVDAK----RVDQLADLDTGDAPVYAATPDVLERATGFHVHRGVLASFRRKP 129 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L + +++ ++L+ VN+ N+GAI R+ A D ++ + + + + Sbjct: 130 LPDAAGVLADARRAVILEDVNNHTNLGAIFRAVAALGVDAVLLSPSCADPLYRRSVRVSM 189 Query: 182 G---ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 G A+ + ++ + + AL+LGAEG Sbjct: 190 GEVFAVPYARLEPWPEALAGVRAAGFTVLAMTPAPDAVPIQRLTVAQRARSALLLGAEGA 249 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 GL + + + + M + +LNV+ A AVA + Sbjct: 250 GLTRAALDASDARVVIPMRRGVDSLNVAAATAVACWELGR 289 >gi|255635868|gb|ACU18281.1| unknown [Glycine max] Length = 324 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 55/288 (19%), Positives = 102/288 (35%), Gaps = 27/288 (9%) Query: 16 KDSHYAKLRR----NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA------LNNPS 65 + SH K + ++ K S + + + G + + + S Sbjct: 34 RTSHEEKPKPITSVSNPFVKHCLKLRNSSSYRRSHASAIVVGATPIREICRFRESIQDGS 93 Query: 66 RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE-------T 118 + L+ A D + V +V + + + E++ ++ Sbjct: 94 VLMDCLILPDKADIPDGLDKSTASVVRVSSVVMRKLSGLQTTESLDAIALMKIPASFFSV 153 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L + ++VLD + DP N+G +LRSAVAF DG+ + + Sbjct: 154 DDHQKNCLKWFPSVHRILVLDGIQDPGNLGTLLRSAVAFRWDGVFLLPGCCDPFNEKALR 213 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS---------KKPLEQEIKNDKI 229 ++ GA +P + S K G + + + Sbjct: 214 ASRGASFQLPVVSGSWNHLESLKKEFQMRFLAGHPEHEGLVKPVSSLSPSFCDSLSDTPL 273 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L+LG+EG GL K+ +T + + M G ++LNVS A + LY+ Q Sbjct: 274 CLVLGSEGSGLSEKSLQTC-ELVSIAMTGEYESLNVSVAGGIFLYMLQ 320 >gi|260891370|ref|ZP_05902633.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia hofstadii F0254] gi|260858753|gb|EEX73253.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia hofstadii F0254] Length = 233 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 3/230 (1%) Query: 51 LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G++ V L + K+ K + + + +T + G Sbjct: 4 IIGINPVIEVLKSDKNIEKLEVYKKIKKETIKEILNLASRRNIKIFYTDRRT-ENSQGVV 62 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 A+ + +++VLD V DP N GAI+RSA F DGII R Sbjct: 63 ALVSEFDYYVDFSAFLEKLLKKEKSIVVVLDQVQDPRNFGAIIRSAECFGVDGIIIQDRN 122 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S + + KS++GA+EH+ ++++N++D + K+ +G+ G +D + +E +K Sbjct: 123 SVKVTETVVKSSTGAIEHVDIVKVTNISDTIDKLKKYGYAVYGAEADGQNYYYEENYPEK 182 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+LG+EG G+R K +E + +H+ G I +LNVS A + L Sbjct: 183 ACLVLGSEGNGMRKKVKEHCDKIVKIHLKGQINSLNVSVAGGIILAEMSK 232 >gi|115454647|ref|NP_001050924.1| Os03g0685100 [Oryza sativa Japonica Group] gi|108710455|gb|ABF98250.1| RNA methyltransferase, TrmH family protein, expressed [Oryza sativa Japonica Group] gi|113549395|dbj|BAF12838.1| Os03g0685100 [Oryza sativa Japonica Group] gi|215765471|dbj|BAG87168.1| unnamed protein product [Oryza sativa Japonica Group] Length = 340 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 55/282 (19%), Positives = 101/282 (35%), Gaps = 26/282 (9%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 +H + K S + + L G+ + + I LL Sbjct: 54 NHKQVASVANPLVKHCVRLRLSSAYRRSCRRILLVGLIPILEMCSFEFSTIETLLLLDG- 112 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---------- 127 L + V V + K+ G ++V A+ + D Sbjct: 113 -IELPEELYGFSG-NVVYVSAAVMKKVSGMQSVDSTEAIAIIHMPKYFRDLDSDQGGAVL 170 Query: 128 --AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + +++ ++VLD + DP N+G ++RSA AF DG+ + ++A GA Sbjct: 171 DEWLGSAKRILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRAARGASL 230 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI----------KNDKIALILGA 235 +P + + S G S E+ ++ + L+LG+ Sbjct: 231 QLPVVSGNWSDLHALMAKSDMKMLAGHPESSSNGSERTHVLSKELADSLMSESVCLVLGS 290 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 EG GL T + + ++ M G ++LNVS A + L++ Q Sbjct: 291 EGNGLSADTLQAC-ELVNIPMQGTFESLNVSVAGGIFLFMLQ 331 >gi|13174243|gb|AAK14417.1|AC087851_9 putative RNA methyltransferases [Oryza sativa Japonica Group] gi|222625582|gb|EEE59714.1| hypothetical protein OsJ_12143 [Oryza sativa Japonica Group] Length = 329 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 55/282 (19%), Positives = 101/282 (35%), Gaps = 26/282 (9%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 +H + K S + + L G+ + + I LL Sbjct: 43 NHKQVASVANPLVKHCVRLRLSSAYRRSCRRILLVGLIPILEMCSFEFSTIETLLLLDG- 101 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---------- 127 L + V V + K+ G ++V A+ + D Sbjct: 102 -IELPEELYGFSG-NVVYVSAAVMKKVSGMQSVDSTEAIAIIHMPKYFRDLDSDQGGAVL 159 Query: 128 --AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + +++ ++VLD + DP N+G ++RSA AF DG+ + ++A GA Sbjct: 160 DEWLGSAKRILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRAARGASL 219 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI----------KNDKIALILGA 235 +P + + S G S E+ ++ + L+LG+ Sbjct: 220 QLPVVSGNWSDLHALMAKSDMKMLAGHPESSSNGSERTHVLSKELADSLMSESVCLVLGS 279 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 EG GL T + + ++ M G ++LNVS A + L++ Q Sbjct: 280 EGNGLSADTLQAC-ELVNIPMQGTFESLNVSVAGGIFLFMLQ 320 >gi|260425256|ref|ZP_05779236.1| RNA methyltransferase, TrmH family, group 3 [Citreicella sp. SE45] gi|260423196|gb|EEX16446.1| RNA methyltransferase, TrmH family, group 3 [Citreicella sp. SE45] Length = 278 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 88/239 (36%), Positives = 132/239 (55%), Gaps = 9/239 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++S+ E ++L+G+H V AL NP R+ +L+ T NA A+L DA + Sbjct: 30 KEQSKKARAAETVWLFGLHAVRDALMNPRREKLRLIVTLNAQAKL-EDAIAAGGIEPEIH 88 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAIL 151 P+ + ++VHQG ALE PL L+ V L++LD V DPHN+GAIL Sbjct: 89 DPRKFGAPLDPQSVHQGAALEVKPLDWGRLEDVAMGDGETPPRLVLLDRVTDPHNVGAIL 148 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F +I T+ ++ E+ LAK+ASGALE PY+R NL D ++ + G+ +G Sbjct: 149 RSAEVFGAQAVIGTQHHAAPETGALAKTASGALERQPYLRERNLADTIRALQEMGYLVLG 208 Query: 212 LSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L ++ +E +++ +AL+LGAEG GLR KT+ET + + +LNVSN Sbjct: 209 LDGEADTTIETALEGMRDRAVALVLGAEGPGLREKTKETVDRLVRIEFARSFGSLNVSN 267 >gi|288923467|ref|ZP_06417588.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EUN1f] gi|288345177|gb|EFC79585.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EUN1f] Length = 361 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 103/244 (42%), Gaps = 11/244 (4%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQ 99 + F+ G + V AL L+ + V V Sbjct: 108 RRGETDEFVVGRNAVVEALRAGVPASSLLIAGGLEFDERVADARRLAGRAGLTVVDVGRV 167 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRS 153 +D++ A HQGLAL P D L++ LD V DP N+GA++RS Sbjct: 168 ELDRLC-PNAPHQGLALSVPPFEYAHPDDVLAATQSAAPGLVVALDGVTDPRNLGAVVRS 226 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF +G++ +R + +A K+++GA +P R NLT L+ G +GL+ Sbjct: 227 AAAFGANGVVVPERRAAGMTAAAWKTSAGAAARLPVARAVNLTRTLRSFAESGLFVVGLA 286 Query: 214 SDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 +D + ++ D + L++G+EG+GL E + M G +++LN A +A Sbjct: 287 ADGEVDIDDLQVAADPLVLVVGSEGRGLSRLVGECCDLKVRIPMAGAMESLNAGVATGIA 346 Query: 273 LYIT 276 L Sbjct: 347 LAEI 350 >gi|218193529|gb|EEC75956.1| hypothetical protein OsI_13060 [Oryza sativa Indica Group] Length = 329 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 101/282 (35%), Gaps = 26/282 (9%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 +H + K S + + L G+ + + I LL Sbjct: 43 NHKQVASVANPLVKHCVRLRLSSVYRRSCRRILLVGLIPILEMCSFEFSTIETLLLLDG- 101 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---------- 127 L + V V + K+ G ++V A+ + D Sbjct: 102 -IELPEELYGFSG-NVVYVSAAVMKKVSGMQSVDSTEAIAIIHMPKYFRDLDSDQGGAVL 159 Query: 128 --AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + +++ ++VLD + DP N+G ++RSA AF DG+ + ++A GA Sbjct: 160 DEWLGSAKRILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRAARGASL 219 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI----------KNDKIALILGA 235 +P + + G S E+ ++ + L+LG+ Sbjct: 220 QLPVVSGNWSDLHALMAKPDMKMLAGHPESSSNGSERTHVLSKELADSLMSESVCLVLGS 279 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 EG GL +T + + ++ M G ++LNVS A + L++ Q Sbjct: 280 EGNGLSAETLQAC-ELVNIPMQGTFESLNVSVAGGIFLFMLQ 320 >gi|229488371|ref|ZP_04382237.1| rRNA methyltransferase [Rhodococcus erythropolis SK121] gi|229323875|gb|EEN89630.1| rRNA methyltransferase [Rhodococcus erythropolis SK121] Length = 268 Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 57/251 (22%), Positives = 107/251 (42%), Gaps = 3/251 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ + GV L + I LL + L L D + Sbjct: 17 DFRDLNSSDRRPDLPEGKGLVIAEGVFVTQRLLTSRFEPI-SLLGVERRLLELADDLD-G 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + + ++VG LA P D +++++ ++VL+ VND N+G Sbjct: 75 VDVPFYRTSAEVMAEVVGFHLNRGVLAAAARPAPLAVSDVLKDAKTVVVLEGVNDHENLG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++ R+A D ++ K + + + G + +P+ ++ L ++ GFQ Sbjct: 135 SMFRNAAGLGVDAVLFGKGCADPLYRRSVRVSMGHVLRVPFAHVAKWPHDLDELRGNGFQ 194 Query: 209 TIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 I L+ + + + + +K+AL+LGAEG GL A + M +LNV+ Sbjct: 195 LISLTPNPEAVTLAEAMTGEKVALLLGAEGPGLTEHAMRATDIRAKIPMAPGTDSLNVAT 254 Query: 268 AAAVALYITQN 278 AAA+A Y Sbjct: 255 AAAMAFYERVR 265 >gi|111023734|ref|YP_706706.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1] gi|110823264|gb|ABG98548.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1] Length = 283 Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 103/265 (38%), Gaps = 10/265 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA--LARLDW 83 + +++ QS+ ++ + GV ++ AL + I LL + L+ Sbjct: 20 RNARFQQWQSYLTNRAKRTKAGRFLIQGVRPLNLALEHDW-PIESLLHRIDGPPLSDWAR 78 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDHV 141 + V + + ++ K + A +P L +R L++V D Sbjct: 79 ELLETRSVEQIGVSAELMAELGEKTTTTAPELIAIAKTRTPRLKDLRLQSVPLIVVFDRP 138 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 P N+G ++RSA AF D ++ + ++++G+L +P + +S++ + L Sbjct: 139 ASPGNLGTLVRSANAFGADAVVVVGHGADPFDPRSVRASTGSLFAMPVVTVSSVDEILAF 198 Query: 202 MHSWGF-----QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + +G ++ L++G E +G+ ++ ++ ++ + Sbjct: 199 RDARRASGTDLHIVGTDETGSVTIDAHDFGGGTVLVIGNETRGMSAAWRDGCDTVVNIPI 258 Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281 G +L +A AVALY Sbjct: 259 GGAASSLGAPSAGAVALYEIARQRK 283 >gi|290476233|ref|YP_003469133.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004] gi|289175566|emb|CBJ82369.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004] Length = 339 Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 79/244 (32%), Gaps = 7/244 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A N I + ++ R + V + Sbjct: 94 RRQRLEETRIYGENACQAMFKNRPEAIVRAWFVQSVTPRFRDALKWMAANRKAYHVVDDE 153 Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ L ++ L++V +PHN+GAI+RS Sbjct: 154 ELVKASGTE-HHGGVCFLIKKRNGLDVETYLQQAPAKDCVLALENVGNPHNLGAIMRSCA 212 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G+I A + + GA T Q + S Sbjct: 213 HFGVQGVILQDVAMLESGAAVRTAEGGAEHIKGIDADGFTTTLNQFRCAGYTIVTTSSHK 272 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L + +K+ L+LG E GL E + G I++LNVS A + L Sbjct: 273 GSTTLAKADLPEKMVLVLGQESDGLSDSIWEDGDIRLSIGGTGRIESLNVSVATGIMLAE 332 Query: 276 TQNH 279 Sbjct: 333 WWRQ 336 >gi|254773895|ref|ZP_05215411.1| SpoU rRNA methylase family protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 289 Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 98/255 (38%), Gaps = 10/255 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 ++ + S +++ S + GV V L + R L RL + Sbjct: 22 FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPHALL----GTERRLAELRDDLA 77 Query: 90 PFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 PV + ++VG LA + + S+ + VL+ VND N+ Sbjct: 78 GVPVPYYRTSADVMARVVGFHLNRGVLAAARRVPEPGVAELLAGSRTVAVLEGVNDHENL 137 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI R+A D +I + + + G +PY R ++ L+ + GF Sbjct: 138 GAIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKEKGF 197 Query: 208 QTIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + ++ + D++A+++GAEG GL P + + M +L Sbjct: 198 RLLAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSL 257 Query: 264 NVSNAAAVALYITQN 278 NV+ AAA+A Y Sbjct: 258 NVATAAALAFYERSR 272 >gi|118466066|ref|YP_880268.1| SpoU rRNA methylase family protein [Mycobacterium avium 104] gi|118167353|gb|ABK68250.1| SpoU rRNA methylase family protein [Mycobacterium avium 104] Length = 432 Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 98/255 (38%), Gaps = 10/255 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 ++ + S +++ S + GV V L + R L RL + Sbjct: 165 FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPHALL----GTERRLAELRDDLA 220 Query: 90 PFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 PV + ++VG LA + + S+ + VL+ VND N+ Sbjct: 221 GVPVPYYRTSADVMARVVGFHLNRGVLAAARRVPEPGVAELLAGSRTVAVLEGVNDHENL 280 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI R+A D +I + + + G +PY R ++ L+ + GF Sbjct: 281 GAIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKEKGF 340 Query: 208 QTIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + ++ + D++A+++GAEG GL P + + M +L Sbjct: 341 RLLAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSL 400 Query: 264 NVSNAAAVALYITQN 278 NV+ AAA+A Y Sbjct: 401 NVATAAALAFYERSR 415 >gi|322688977|ref|YP_004208711.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F] gi|320460313|dbj|BAJ70933.1| putative RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F] Length = 292 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 97/276 (35%), Gaps = 28/276 (10%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP 88 Y + ++R + AL + L+ + +D Sbjct: 17 YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAADREPLSLLVEEPWLEGMKDTFDFIDG 76 Query: 89 H---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV P+ + ++ G L L + ++++ + V++++ D Sbjct: 77 RWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWPLPSVAEVCKSARRVAVMENIVDHT 136 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA++RSA A D ++ T A+ + G + IP+ RI+ D + + Sbjct: 137 NVGALMRSAAALDVDVVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKHY 196 Query: 206 GFQT------------------------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 L+ P E DK+ALI G EG GL Sbjct: 197 WPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLALIFGTEGDGLS 256 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 T A + M + +LNV+ ++AVA Y T+ Sbjct: 257 HHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292 >gi|198435468|ref|XP_002131824.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1 homolog [Ciona intestinalis] Length = 326 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 61/321 (19%), Positives = 102/321 (31%), Gaps = 47/321 (14%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLY 52 +LIS + KDS K+ + K+ + N ++ Q N FLY Sbjct: 10 SLISSCRHILRKYGKDSKPIKISKQ----KRKTNLNHNTKARHQRFDKIETSDFGNEFLY 65 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWD--------ANLPHPFPVKTVPPQTIDKI 104 G + AL + R IF++ + D P++ V + +I Sbjct: 66 GRSVCNLALLSSRRPIFKMFINSKWEVQEPEDPRVQTSLKEAEERNIPIEFVSVSDLFEI 125 Query: 105 VGKEAVHQGLALETAPLLSPTL----------DAVRNSQLLMVLDHVNDPHNIGAILRSA 154 HQG+ LE L L + + ++L + DP N+G ILR+ Sbjct: 126 TQGF-PHQGICLEVGQLPVIPLTQDTITSLIHHKLEQCPVWVLLYDIIDPMNVGNILRTC 184 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 +I T + +P S+ S+ Y Sbjct: 185 HFLGVHAVIMTPQCAPLSSSACKASSGATEIMQIYSVRKPTQFIQDMSEKNWEILGTDIF 244 Query: 215 DSKKPLEQEIK-------NDKIALILGAEGKGLRPKTQETATSMAHL-HMPGIIK----- 261 + LILG+EG G+ +E T + + + + Sbjct: 245 REDNNTHCPVLDVVEHKVTKPSLLILGSEGSGIPSDVKEICTKLLTIKPLKTNTENPQLS 304 Query: 262 --ALNVSNAAAVALYITQNHF 280 LNVS A A+ L+ + Sbjct: 305 VPCLNVSAATAIILHQILLNR 325 >gi|111021948|ref|YP_704920.1| RNA methyltransferase [Rhodococcus jostii RHA1] gi|110821478|gb|ABG96762.1| probable RNA methyltransferase [Rhodococcus jostii RHA1] Length = 278 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 99/251 (39%), Gaps = 3/251 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ + GV L + I L + D Sbjct: 27 DFRDLNSSDRRPDLPEGKGLVIAEGVLVAQRLLTSRFDPI--ALLGVDRRLEELTDDLAH 84 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + ++VG LA P D + +++ + VL+ VND N+G Sbjct: 85 VDVPFYRTTADVMAEVVGFHLNRGVLAAARRPAPLELPDVLEHTRTVAVLEGVNDHENLG 144 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++ R+A D ++ K + + + G + +P+ ++ L + GFQ Sbjct: 145 SMFRNAAGLGVDAVVFGKGCADPLYRRAVRVSMGHVLRVPFAHVTKWPHDLDALRERGFQ 204 Query: 209 TIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 I L+ + + + + +K+AL+LGAEG GL A + M +LNV+ Sbjct: 205 LISLTPNPEAVTLAEAMTGEKVALLLGAEGPGLTEHAMRATDIRARIPMAPGTDSLNVAT 264 Query: 268 AAAVALYITQN 278 AAA+A Y Sbjct: 265 AAAMAFYERVR 275 >gi|23335009|ref|ZP_00120247.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A] gi|23465439|ref|NP_696042.1| tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705] gi|189439462|ref|YP_001954543.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|312132870|ref|YP_004000209.1| spou1 [Bifidobacterium longum subsp. longum BBMN68] gi|317482198|ref|ZP_07941220.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA] gi|322690946|ref|YP_004220516.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|23326090|gb|AAN24678.1| possible tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705] gi|189427897|gb|ACD98045.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|311773840|gb|ADQ03328.1| SpoU1 [Bifidobacterium longum subsp. longum BBMN68] gi|316916336|gb|EFV37736.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA] gi|320455802|dbj|BAJ66424.1| putative RNA methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] Length = 292 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 97/276 (35%), Gaps = 28/276 (10%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP 88 Y + ++R + AL + L+ + +D Sbjct: 17 YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAADREPLSLLVEEPWLEGMKDTFDFIDG 76 Query: 89 H---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV P+ + ++ G L L + ++++ + V++++ D Sbjct: 77 RWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWPLPSVAEVCKSARRVAVMENIVDHT 136 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA++RSA A D ++ T A+ + G + IP+ RI+ D + + Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKHY 196 Query: 206 GFQT------------------------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 L+ P E DK+ALI G EG GL Sbjct: 197 WPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLALIFGTEGDGLS 256 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 T A + M + +LNV+ ++AVA Y T+ Sbjct: 257 HHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292 >gi|187735575|ref|YP_001877687.1| RNA methyltransferase, TrmH family, group 3 [Akkermansia muciniphila ATCC BAA-835] gi|187425627|gb|ACD04906.1| RNA methyltransferase, TrmH family, group 3 [Akkermansia muciniphila ATCC BAA-835] Length = 193 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 82/152 (53%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++ LL++LD V DPHN+GAILR+A D +I + S + + + + GA E +P+ Sbjct: 42 SSNPLLLILDCVQDPHNLGAILRTADGAGVDAVIAPRDKSVGITETVLRVSVGAAEKVPF 101 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I+++NL ++++ S G G S + L + AL++GAEG+G+R T+E Sbjct: 102 IQVTNLARTMKQLQSRGIWIFGTSDKGDRGLYETDFTGPAALVMGAEGEGMRRLTEENCD 161 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M G I LNVS A V LY + Sbjct: 162 FLLRIPMKGSIPCLNVSVATGVCLYEMVRQRS 193 >gi|85858093|ref|YP_460295.1| 23S rRNA methyltransferase [Syntrophus aciditrophicus SB] gi|85721184|gb|ABC76127.1| 23S rRNA methyltransferase [Syntrophus aciditrophicus SB] Length = 272 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 50/271 (18%), Positives = 108/271 (39%), Gaps = 13/271 (4%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 + ++++ A+LR + S K + + G V A L + Sbjct: 4 PRHLTMQNPSKAQLR--------LWSRLDKVKTREETGLFLAEGFKVVQALLESRWDVQA 55 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP--TLD 127 L+ + + LP P+ + + + + LA+ P L Sbjct: 56 LLILEEKKDRWAAFCETLPVSLPLYGLTRKEWKGLTQDVSPEGILAVGITPPRLQLADLM 115 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A L++L +N+P N+G ++R+A+ F G++ ++ + + ++A G++ H+ Sbjct: 116 AKGARGPLLLLHEINNPGNLGTLVRTALWFGFAGVVLSQGSVDPLNPKVIRAAMGSIFHV 175 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P++ ++L+ L ++ P +K AL+LG+E GL + Sbjct: 176 PFLFGADLSKVLPRVKENFHVVGSSVRTGTLPHAC---GEKTALLLGSESHGLPETLLKL 232 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 H+ G+ ++L++ AAA+ +Y Sbjct: 233 TDEQWHIPRRGVGESLSLPQAAAILMYECVR 263 >gi|114564277|ref|YP_751791.1| tRNA guanosine-2'-O-methyltransferase [Shewanella frigidimarina NCIMB 400] gi|114335570|gb|ABI72952.1| tRNA guanosine-2'-O-methyltransferase [Shewanella frigidimarina NCIMB 400] Length = 233 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L + LD V+ +NI A+LRSA I ++ Sbjct: 15 NRQVDLTVCLDKVHMTNNIAAVLRSADCVGIHQI-HAVWPDDDMRVSGNTASGSQQWVDT 73 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + SDS + A+++G E G+ + A Sbjct: 74 VKHYTFEEAHQAFKKQKMQVLTTTFSDSAVDFREIDYTQPTAIVMGNERDGVSAEAIAAA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS AAA+ +Y Q Sbjct: 134 DQHIIIPMRGMVQSLNVSVAAALVMYEAQRQR 165 >gi|206577025|ref|YP_002237077.1| RNA methyltransferase, TrmH family [Klebsiella pneumoniae 342] gi|206566083|gb|ACI07859.1| RNA methyltransferase, TrmH family [Klebsiella pneumoniae 342] Length = 361 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 91/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 117 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 176 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ ++ ++ L+ V +PHN+GAI+RS Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRHGTSVAQWVAKAAEDDCVLALEDVGNPHNLGAIMRSCA 235 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + ES ++A G E + I + D L + G+ + SS Sbjct: 236 HFGVKGVVV-QDAGVLESGAAIRTAEGGAERVEPITGDSFIDTLDQFRKAGYAIVSTSSH 294 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + PL + K+ L+LG E GL ++ ++ G +++LNVS A V L Sbjct: 295 NGTPLFKAELPKKMVLVLGQERDGLSDAAISSSDLSVAINGTGNVESLNVSVATGVLLAE 354 Query: 276 TQNH 279 Sbjct: 355 WWRQ 358 >gi|298706974|emb|CBJ29793.1| tRNA/rRNA methyltransferase (SpoU) [Ectocarpus siliculosus] Length = 354 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 96/281 (34%), Gaps = 23/281 (8%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 I+ ++ K+ ++ H K R + G V + Sbjct: 66 ITSAQNPKVKLMRSFH-------------------KRRTRDDGGKILAEGHRLVCDLIEG 106 Query: 64 PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 +++ + A V ++V + A + Sbjct: 107 GLTPTLVIVSPEALRASPGPRLQAALETLSADVVAVAPAEVVQRCCDTVTSQGVVALVER 166 Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P L Q +++ D + DP N+G ++R+A D ++ T + +++ GA Sbjct: 167 PVLPLPPTLQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGA 226 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 +P +R+ + + ++ M + G + ++ AL++GAE +GL Sbjct: 227 SFRLPSLRLESWQEVVELMRARGIRMYAADGGARLSHFDADWTSPSALVVGAEARGLSDA 286 Query: 244 TQETAT----SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + + G +++LN + A A+ L Q Sbjct: 287 ARLELESGGIAGVSVPLEGGVESLNAAVAGAIVLGEAQRQR 327 >gi|197284301|ref|YP_002150173.1| methyltransferase [Proteus mirabilis HI4320] gi|227358559|ref|ZP_03842884.1| RNA methyltransferase [Proteus mirabilis ATCC 29906] gi|194681788|emb|CAR41011.1| putative tRNA/rRNA methyltransferase [Proteus mirabilis HI4320] gi|227161270|gb|EEI46344.1| RNA methyltransferase [Proteus mirabilis ATCC 29906] Length = 367 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 79/243 (32%), Gaps = 5/243 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A N I + + R + V + Sbjct: 122 RRQRLEETRIYGENACQAMFKNRPEAIVRAWFLQEVTPRFREALKWMAANRKAYHVVEEE 181 Query: 100 TI---DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + V + L ++ L+ V +PHN+GAI+RS Sbjct: 182 EMVKAARTDHHGGVCFLIKKRVGHDAQTYLKDAPTKDCVLALEDVGNPHNVGAIMRSCAH 241 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F G+I+ A + + GA + Q + S Sbjct: 242 FGVKGVISPDSSVLESGAAVRTAEGGAEYIQGIDADNFAQTLEQFKQAGYTLVTTSSHKG 301 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 PL + +K+ LILG E GL T + ++ G I++LNVS A+ V L Sbjct: 302 SVPLAKAQLPEKMVLILGQEKDGLSDSTLKQGDMSIYIGGTGHIESLNVSVASGVLLAEW 361 Query: 277 QNH 279 Sbjct: 362 WRQ 364 >gi|145219176|ref|YP_001129885.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris vibrioformis DSM 265] gi|145205340|gb|ABP36383.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeovibrioides DSM 265] Length = 250 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 102/245 (41%), Gaps = 9/245 (3%) Query: 36 FNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPV 93 Q+ ++ Q E G+ TV L + + L + +A A L + V Sbjct: 3 RLQRKKYRDQEEMFLGEGLRTVRELLLHLPGPDSLVALFLSPDAEALLPE--AEAYRGKV 60 Query: 94 KTVPPQTIDKIVGKEAVH--QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 +V ++ G E+ G + L ++++ LD V DP N G IL Sbjct: 61 FSVDSADFLRLTGTESPQGVVGAFRQPRFSPVDELPVTGEGRMVVALDGVQDPGNAGTIL 120 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A F D +++ + +S++G+L +P+ + +LTD L+++ G+ + Sbjct: 121 RTAAWFGADALLSGPGTVDLYNPKTVRSSAGSLFSLPHYSVDSLTDELERLKQNGYGVLC 180 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSNA 268 S + + E ++ L++G E G+ A + + +++LN S + Sbjct: 181 SSLEGRDFREFTDWPERKVLVVGNEANGISSGVLSLADRLVLIPHGRGGVRVESLNASVS 240 Query: 269 AAVAL 273 AAV L Sbjct: 241 AAVLL 245 >gi|226308108|ref|YP_002768068.1| RNA methyltransferase [Rhodococcus erythropolis PR4] gi|226187225|dbj|BAH35329.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4] Length = 281 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 57/251 (22%), Positives = 108/251 (43%), Gaps = 3/251 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ + GV L + + I LL + L L D + Sbjct: 30 DFRDLNSSDRRPDLPEGKGLVIAEGVFVTQRLLTSRFQPI-SLLGVERRLLELADDLD-G 87 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + + ++VG LA P D +++++ ++VL+ VND N+G Sbjct: 88 VDVPFYRTSAEVMAEVVGFHLNRGVLAAAARPAPLAVSDVLKDAKTVVVLEGVNDHENLG 147 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++ R+A D ++ K + + + G + +P+ ++ L ++ GFQ Sbjct: 148 SMFRNAAGLGVDAVLFGKGCADPLYRRSVRVSMGHVLRVPFAHVAKWPHDLDELRGNGFQ 207 Query: 209 TIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 I L+ + + + + +K+AL+LGAEG GL A + M +LNV+ Sbjct: 208 LISLTPNPEAVTLAEAMTGEKVALLLGAEGPGLTEHAMRATDIRAKIPMAPGTDSLNVAT 267 Query: 268 AAAVALYITQN 278 AAA+A Y Sbjct: 268 AAAMAFYERVR 278 >gi|239622037|ref|ZP_04665068.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515228|gb|EEQ55095.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516989|emb|CBK70605.1| rRNA methylases [Bifidobacterium longum subsp. longum F8] Length = 292 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 97/276 (35%), Gaps = 28/276 (10%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP 88 Y + ++R + AL + L+ + +D Sbjct: 17 YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAADREPLSLLVEEPWLEGMKDTFDFIDG 76 Query: 89 H---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV P+ + ++ G L L + R+++ + V++++ D Sbjct: 77 RWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWPLPSVAEVCRSARRVAVMENIVDHT 136 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA++RSA A D ++ T A+ + G + IP+ RI+ D + + Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKHY 196 Query: 206 GFQT------------------------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 L+ P E DK+ALI G EG GL Sbjct: 197 WPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLALIFGTEGDGLS 256 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 T A + M + +LNV+ ++AVA Y T+ Sbjct: 257 HHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292 >gi|91216324|ref|ZP_01253291.1| putative tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755] gi|91185462|gb|EAS71838.1| putative tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755] Length = 242 Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 87/254 (34%), Gaps = 20/254 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S N+K +H + GV + L +P R NAL + ++ Sbjct: 6 QIKLIKSLNKK-KHRLENGLFVAEGVKVIKEFLKSPFRL--------NALYSIADIFHIE 56 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + + + +I + LA+ P S + V L + LD + DP N+G Sbjct: 57 EG-ESHIISEKDLQQISNLKTAQTALAVFEIPKSSVPDEKVE---LTLALDSIRDPGNLG 112 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R F +I + + A TD + S Sbjct: 113 TIIRMCDWFGVKQLICSLDTVDCFN----PKVVQATMGSLTRVNVIFTDLESYLLSTSNF 168 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNV 265 G D + E +K ++LG E G+ + + + G ++LNV Sbjct: 169 KYGAFMDGENIYETSLKTKNAIIVLGNEANGISSEINSQLDAKISIPRHGVIKSAESLNV 228 Query: 266 SNAAAVALYITQNH 279 + A A+ L + Sbjct: 229 AMAGAIMLSEFKRR 242 >gi|167771637|ref|ZP_02443690.1| hypothetical protein ANACOL_03009 [Anaerotruncus colihominis DSM 17241] gi|167666277|gb|EDS10407.1| hypothetical protein ANACOL_03009 [Anaerotruncus colihominis DSM 17241] Length = 264 Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 89/260 (34%), Gaps = 8/260 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALA 79 R + K+ + R + GV A L T++ Sbjct: 8 SRENPAVKQYTALASSRRRRREDGRFTTEGVKLTLEAFTAGYTP-EALFLTQDLTDSVRR 66 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 RL A + P K+ G + + + ++ ++L Sbjct: 67 RLMPVAAACRRL--YEISPSVAAKLAGAVSPQGVFGVFMMLDNRTQPVKIGSNGKYLLLS 124 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + DP N+G ILR+A AF DG+I + + + +++ G + +L+ ++ Sbjct: 125 SLQDPGNVGTILRTAAAFGTDGVILSADCPDLYAPKVLRASMGGVFRARACVSDDLSASI 184 Query: 200 QK-MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + + ++ L + A+++G EG G+ P+ + M Sbjct: 185 AALRAAGVPVWAAMPAEGSVSLRDISLHGGGAVVVGNEGGGIAPELAALCDGALTIPMEP 244 Query: 259 IIKALNVSNAAAVALYITQN 278 ++LN + AA V L+ Sbjct: 245 GCESLNAAMAAGVILWEMYR 264 >gi|332653528|ref|ZP_08419273.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16] gi|332518674|gb|EGJ48277.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16] Length = 253 Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 95/277 (34%), Gaps = 28/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRH-TSQPENLFLYGVHTVSA 59 M +I+ R + +K++ + R + G+ + Sbjct: 2 MEIITS------------------RKNPLMQKIRQLSSGGRSVREKAGEYLGDGIKLLEE 43 Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 AL + + T + LP + VP ++ I + L L Sbjct: 44 ALK------WDVPLTTVVVTPEVTPPALPAGVRLVQVPRDVMETISPMKTPQGALFLAQL 97 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 +P L++ D V DP N+G I RSA A DG++ + S + ++ Sbjct: 98 SSTTPPQRLEGKRYLVL--DGVQDPGNVGTIWRSADALGADGLLLVNGCADPYSPKVVRA 155 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 GA +P + S + + Q + A+++G+EG+G Sbjct: 156 TMGACFRLPVWETTVEELEGLLKTSQIPLYATALREDTVDVRQADL-GRAAVVIGSEGRG 214 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + A + M ++LN ++AA V L+ Sbjct: 215 VSQALLDRAEQTVKIPMRERCESLNAASAAVVVLWEM 251 >gi|227501411|ref|ZP_03931460.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725] gi|306835564|ref|ZP_07468577.1| SpoU rRNA methylase [Corynebacterium accolens ATCC 49726] gi|227077436|gb|EEI15399.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725] gi|304568564|gb|EFM44116.1| SpoU rRNA methylase [Corynebacterium accolens ATCC 49726] Length = 268 Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 51/263 (19%), Positives = 100/263 (38%), Gaps = 10/263 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 +++ N+ + S + G V+A L + L+ L + Sbjct: 6 PRDPRLDDIRNLNKSDK--SGEGLVIAEGP-LVAARLMESRFPMRCLVGFPQKLEAFFAE 62 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 P PV V +T+ ++ G + +A + + ++ + VL+ V D Sbjct: 63 YGEPE-CPVYEVSRETLAEVAGFDMHRGLVAAADRAPEPEVGEILEQARTIAVLEGVGDH 121 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK--- 201 NIGAI R A + D ++ + + + G + +P+ + Q+ Sbjct: 122 ENIGAIFRHAAGMNVDAVLLGSGAADPLYRRSVRVSMGHVLRVPFAHLEGGFTTWQRSLQ 181 Query: 202 ---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 S+ ++ + + E DK+A+++GAEG GL + A + M Sbjct: 182 ALADASFTLISLTPNPQAVHLAEAMHGQDKVAMLVGAEGPGLTEHAMKATDIRARIPMAP 241 Query: 259 IIKALNVSNAAAVALYITQNHFA 281 +LNV+ AAA++ Y Q + Sbjct: 242 GTDSLNVATAAAISFYERQRSLS 264 >gi|189459414|ref|ZP_03008199.1| hypothetical protein BACCOP_00037 [Bacteroides coprocola DSM 17136] gi|189433871|gb|EDV02856.1| hypothetical protein BACCOP_00037 [Bacteroides coprocola DSM 17136] Length = 257 Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 84/255 (32%), Gaps = 14/255 (5%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K ++ + G V+ +N+ L+ATK L Sbjct: 6 KIKYIRSLELK-KNRKEEHAFLAEGNKLVNDLINH--FSCQLLVATKEWLQSHPHLQAA- 61 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + V + + + + + LA+ P + S L + LD V DP N+G Sbjct: 62 ---EIIEVTHEELSRASLLKTPQEVLAVFEQPHYEFDANVTEQS-LCLALDDVQDPGNLG 117 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I + + + ++ GA+ + + Sbjct: 118 TIIRIADWFGIEHIFCSSGTADVYNPKTIQATMGAIARVKLHYCNLPDFLKSASQKNTPI 177 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264 ++ +I+G EG G+ + E T + ++LN Sbjct: 178 FGTFLDGENIYTQE--LPANGIIIMGNEGNGISKQIAEMVTHRILIPNYPQGCETSESLN 235 Query: 265 VSNAAAVALYITQNH 279 V+ A A+ + Sbjct: 236 VAVATAIVCAEFRRR 250 >gi|294778614|ref|ZP_06744036.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510] gi|294447563|gb|EFG16141.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510] Length = 251 Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 95/256 (37%), Gaps = 16/256 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K + + + G V L L+AT N L + Sbjct: 6 KIKYIRSLELKKK-RKEEQVFVAEGHKLVGDLL--GHFPCKLLIATSNWL----KMNHSA 58 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + V + + + ++ + LA+ P + +++S L + LD V DP N+G Sbjct: 59 TANEIIEVTQEELSRASLQKTPQEVLAVFVQPSYDLNPEVIKSS-LCLALDDVQDPGNLG 117 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I + + + ++ GAL + S Q + S Sbjct: 118 TIIRLADWFGIEHIFCSTGTADVYNPKTVQATMGALARVKVHYCSLP----QLIESLTDI 173 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264 + + + + E + +++G EGKG+ P+ + ++ ++LN Sbjct: 174 PVYGTFLNGNIIYAESLSAHGLIVMGNEGKGVSPEVERLINKKLYIPNYPQERETSESLN 233 Query: 265 VSNAAAVALYITQNHF 280 V+ A AV + Sbjct: 234 VAIATAVVCSEFRRRL 249 >gi|160892176|ref|ZP_02073179.1| hypothetical protein BACUNI_04639 [Bacteroides uniformis ATCC 8492] gi|156858654|gb|EDO52085.1| hypothetical protein BACUNI_04639 [Bacteroides uniformis ATCC 8492] Length = 265 Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 84/236 (35%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + + ++R + AL+ + L K+ Sbjct: 17 FSTLTEAQLRNRLEPDKGLFIAESPKVIKVALDVGYEPLALLCEHKHIYGDAAEIIERCG 76 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + ++ G L P+ D R ++ ++V+D V D NIGA Sbjct: 77 DIPVYTSGRELLAELTGYVLTRGVLCAMRRPVPKSMEDVCRGARRIVVIDGVVDTTNIGA 136 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T+ + + + G + +P+ + D L ++ Sbjct: 137 IFRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGPLDTLGELGFRTAAM 196 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + ++A+++G EG GL + A + + M + +LNV Sbjct: 197 ALTDNSISIDNPVLKTEPRLAIVMGTEGDGLSHEAIAGADYVVRIPMAHGVDSLNV 252 >gi|15828775|ref|NP_326135.1| tRNA/rRNA methyltransferase [Mycoplasma pulmonis UAB CTIP] gi|14089718|emb|CAC13477.1| TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pulmonis] Length = 250 Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 94/281 (33%), Gaps = 36/281 (12%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 +IS K++EKI LK Q ++ + + G H + AL Sbjct: 3 KVISSKENEKIKHLKKL-------------------QNKKYRQKFNEFLIEGDHLIDEAL 43 Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 N Q+ +TK + + + + Q +A Sbjct: 44 KNNFE--CQIYSTKPNEKHD------------FLITKEVLKHVSLLVNSEQKIAKVKIKE 89 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 S + ++ L+++ DP NIG +LRSA++F+ II + + A Sbjct: 90 TSNDFLNIDQKSNILFLNNLQDPTNIGTLLRSALSFNFKNIIYDNLDIYNPKIIRASQG- 148 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 + ++ L Q + KI LILG EG G+ Sbjct: 149 AIFALNFFKSKNHQKTLKYLQEKNYEIIGTFLHSDSTNLYQNSFDKKIVLILGNEGLGIE 208 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + + ++LNV+ A ++ + +N +K Sbjct: 209 KEILTLIDKNVIVPI--NFESLNVAIAGSIIMSYVENKGSK 247 >gi|320106654|ref|YP_004182244.1| tRNA/rRNA methyltransferase SpoU [Terriglobus saanensis SP1PR4] gi|319925175|gb|ADV82250.1| tRNA/rRNA methyltransferase (SpoU) [Terriglobus saanensis SP1PR4] Length = 264 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 93/257 (36%), Gaps = 9/257 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + + K++++ + R + + G H ++ AL + + + ++A L Sbjct: 14 SKTNPRVKQLRAAFEGRRK-LAEGQIAMEGPHLMAEALRSGME-LKAIFVREDARELLSQ 71 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V + + V E+ R+ L +VL+ + D Sbjct: 72 LDLAEENAVV--LSREVFASAVATESSQGIA---ALAYPPEARMPKRSDGLFLVLERLQD 126 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++RSA AF ++ + + ++++G+ IP I + + Sbjct: 127 PGNLGTLVRSAEAFGAAAVLCLPGTADVWNQKALRASAGSAFRIPVIAVEIERLFALQNA 186 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F E A+++G EG GL + + A + PG +++L Sbjct: 187 GMRFIAAVARE--GGTPEAIDLRGGCAVMIGNEGAGLSVELLALSDERATIPCPGAVESL 244 Query: 264 NVSNAAAVALYITQNHF 280 N + A ++ LY Sbjct: 245 NAAVAGSLLLYAASVQR 261 >gi|52081372|ref|YP_080163.1| putative RNA methylase YsgA [Bacillus licheniformis ATCC 14580] gi|52786747|ref|YP_092576.1| YsgA [Bacillus licheniformis ATCC 14580] gi|319647279|ref|ZP_08001501.1| YsgA protein [Bacillus sp. BT1B_CT2] gi|52004583|gb|AAU24525.1| putative RNA methylase YsgA [Bacillus licheniformis ATCC 14580] gi|52349249|gb|AAU41883.1| YsgA [Bacillus licheniformis ATCC 14580] gi|317390626|gb|EFV71431.1| YsgA protein [Bacillus sp. BT1B_CT2] Length = 248 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 89/266 (33%), Gaps = 30/266 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K++K+ K H + ++ + G H V A Sbjct: 1 MKRIESAKNQKVKDWKKLHAK-------------------KERTKTNTFLIEGEHLVEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L P + +++ A D ++ + I E A Sbjct: 42 LKTPG-VVKEIMVADEADFPAMIDESVAR----YVLSADAFSAIAETETPQA-----VAA 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + L++ D V DP N+G I+R+A A D ++ + +A +SA Sbjct: 92 VCRMPESGPFQYEKLLLADAVQDPGNLGTIIRTADAAGIDAVVIGQGTVDPYNAKTLRSA 151 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ HIP ++ + P + + AL++G EG G+ Sbjct: 152 QGSHFHIPILKRELSELIEELKGKSVPVYGTA-LQGAVPFREAEPSQSFALLIGNEGSGV 210 Query: 241 RPKTQETATSMAHLHMPGIIKALNVS 266 P ++ + G ++LNV+ Sbjct: 211 DPALLAQTDQNLYVPIYGKAESLNVA 236 >gi|284931714|gb|ADC31652.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. F] Length = 260 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 104/256 (40%), Gaps = 12/256 (4%) Query: 35 SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94 FN K ++ + E L L+G + V L N KI ++ K L + Sbjct: 8 QFNNKHQNKHKKERLCLFGYNAVYEGLINN-LKIKKVYLHKE--DHLLLKLIKQKGIEYE 64 Query: 95 TVPPQTIDKIVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + D + HQG E +++VLD ++DP N Sbjct: 65 LHTIKWFDNQYRDLSNHQGFVAEIDGSSLTISFNQFCEKIKNEQQGIVVVLDQIHDPGNF 124 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWG 206 G ILRS +A + G+I K S + + K++ GA ++ I ++NL+ A++ +G Sbjct: 125 GGILRSCLAANVLGVIFKKDNQASINNTVIKTSLGACFYLNLIEVANLSYAIKDLQDKYG 184 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNV 265 F + + + +K LI+G E KG+ + + A + M I++LNV Sbjct: 185 FWSYVSNLSDQAQDYNVDYANKSILIVGNEQKGVSSQLIKNADYQIKIPMYTDKIQSLNV 244 Query: 266 SNAAAVALYITQNHFA 281 S A + L+ + Sbjct: 245 SVATGIMLFNMKQKIK 260 >gi|254884507|ref|ZP_05257217.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319640801|ref|ZP_07995514.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A] gi|254837300|gb|EET17609.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317387613|gb|EFV68479.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A] Length = 251 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 98/256 (38%), Gaps = 16/256 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K + + + G V L L+AT N L R++ A Sbjct: 6 KIKYIRSLELKKK-RKEEQVFVAEGHKLVGDLL--GHFPCKLLIATSNWL-RMNHSATAN 61 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + V + + + ++ + LA+ P + +++S L + LD V DP N+G Sbjct: 62 ---EIIEVTQEELSRASLQKTPQEVLAVFVQPSYDLNPEVIKSS-LCLALDDVQDPGNLG 117 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I + + + ++ GAL + S Q + S Sbjct: 118 TIIRLADWFGIEHIFCSTGTADVYNPKTVQATMGALARVKVHYCSLP----QLIESLTDI 173 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264 + + + + E + +++G EGKG+ P+ + ++ ++LN Sbjct: 174 PVYGTFLNGNIIYAESLSAHGLIVMGNEGKGVSPEVERLINKKLYIPNYPQERETSESLN 233 Query: 265 VSNAAAVALYITQNHF 280 V+ A AV + Sbjct: 234 VAIATAVVCSEFRRRL 249 >gi|84496489|ref|ZP_00995343.1| rRNA methyltransferase [Janibacter sp. HTCC2649] gi|84383257|gb|EAP99138.1| rRNA methyltransferase [Janibacter sp. HTCC2649] Length = 269 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 87/242 (35%), Gaps = 6/242 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY + + R + + AL R L + L L Sbjct: 14 ADYVSLTDVALRRRTEPERGLYIAESEKVIRRALAAGHRP-RSYLMAERWLTDLGDLVAQ 72 Query: 88 PH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV I+ G LA P L + V +++ ++V++ V D Sbjct: 73 AEQDGIPVFVADHDVIEGFTGFHLHRGTLASMQRPELKSVEEVVADARRVLVIEDVVDHT 132 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA+ RSA A D ++ T R + + + G + +P+ RI + + Sbjct: 133 NVGAVFRSAAALGMDAVLVTPRCADPLYRRAIRVSMGTVFQVPWTRIDPWPRGINLLRDS 192 Query: 206 GFQTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 GF +++AL+LG EG GL +T E A + + M G + + Sbjct: 193 GFTVAALALSDDAVGLDELAANPPERLALVLGTEGDGLSRRTVEGADVVVKIPMAGGVDS 252 Query: 263 LN 264 LN Sbjct: 253 LN 254 >gi|187478243|ref|YP_786267.1| RNA methyltransferase [Bordetella avium 197N] gi|115422829|emb|CAJ49357.1| putative RNA methyltransferase [Bordetella avium 197N] Length = 257 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 87/283 (30%), Gaps = 28/283 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M LIS R++ K + ++ P L L GVH A Sbjct: 1 MKLISS------------------RDNPTVKTLHRLLDQAGRRGAP--LLLEGVHLCEAW 40 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + + + + QG+A Sbjct: 41 LQRHGLPEQAVFDYERLDRPELAHLAREVSEARCIALESRLMRGLASVESDQGVAFVVRA 100 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + V + +L+ D + DP N+G +LR+ A + + S + +S Sbjct: 101 PQLSLPERVGTNCVLL--DRIQDPGNVGTLLRTCAAAGIRQAFLATGTAAAWSPKVLRSG 158 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GA + I D + D L +A + G EG+G+ Sbjct: 159 QGAHF---AMDIHEHVDLHALSARLDVPLAVTTLDDATSLYDTALPASLAWVFGHEGQGV 215 Query: 241 RPKTQETATSMAHLH--MPGIIKALNVSNAAAVALYITQNHFA 281 P Q A + M +++LNV AAA+ L+ + Sbjct: 216 DPALQAQAALRLRIPHDMQ-AVESLNVGAAAAICLFEQRRQRI 257 >gi|213692458|ref|YP_002323044.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523919|gb|ACJ52666.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458603|dbj|BAJ69224.1| putative RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 292 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 56/276 (20%), Positives = 98/276 (35%), Gaps = 28/276 (10%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP 88 Y + ++R + AL + L+ + +D Sbjct: 17 YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAADREPLSLLVEEPWLEGMKDTFDFIDG 76 Query: 89 H---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV P+ + ++ G L LL + R+++ + V++++ D Sbjct: 77 RWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWLLPSVAEVCRSARRVAVMENIVDHT 136 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA++RSA A D ++ T A+ + G + IP+ RI+ D + + Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKHY 196 Query: 206 GFQT------------------------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 L+ P E DK+ALI G EG GL Sbjct: 197 WPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPDEDPTHIDKLALIFGTEGDGLS 256 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 T A + M + +LNV+ ++AVA Y T+ Sbjct: 257 HHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292 >gi|228989300|ref|ZP_04149291.1| tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442] gi|228995483|ref|ZP_04155151.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17] gi|228764212|gb|EEM13091.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17] gi|228770378|gb|EEM18951.1| tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442] Length = 212 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 9/209 (4%) Query: 79 ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRN 131 ++ + ++ P + +D++V E HQG+ + A L+ Sbjct: 1 MQIVLALAKENKIILQHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFEVAAKRNE 58 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++LD + DPHN+G+I+R+A A GII KR + +A +AK+++GA+E+IP R Sbjct: 59 DPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVAR 118 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++NL+ + ++ G G + K N I L++G+EGKG+ E + Sbjct: 119 VTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFL 178 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 HL M G + +LN S AA++ +Y Sbjct: 179 IHLPMVGKVTSLNASVAASLLMYEVYRKR 207 >gi|33861505|ref|NP_893066.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634082|emb|CAE19407.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 428 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 86/292 (29%), Positives = 139/292 (47%), Gaps = 23/292 (7%) Query: 4 ISKKKSEKIFSLKDSHYA-----KLRRNHRDYKKMQSFNQKSRHTSQPEN----LFLYGV 54 I + + S + + ++ + S N + P +++G Sbjct: 135 IKSNEYSYLKSKEKPRNSFNQSQTRFSSNAQQTENYSENSSKKFQLSPNERNYEDWIWGK 194 Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAV 110 H+V AAL N R I ++ T + + L ++ VP + ++ AV Sbjct: 195 HSVFAAL-NSERPINRIWCTSEIFSSEKFYLLLKDLKSKGVLIEEVPWSRLSQLTS-GAV 252 Query: 111 HQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+AL+ A S +L+ ++ +++ LD V DPHN GAI+RSA AF C GII Sbjct: 253 HQGVALQHASTESISLEKLIDISKSKSSNPIIVALDGVTDPHNFGAIIRSAEAFDCKGII 312 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +R S + +AK A+GALEHIP R+ NL A+ ++ GF IGLS D + P+ + Sbjct: 313 VPQRRSAGLTGTVAKVAAGALEHIPVSRVVNLNRAIDELKKKGFIIIGLSGDGQVPISEF 372 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV-ALY 274 + + +I+GAE KG+ Q+ + + + G +LN S AAA+ Y Sbjct: 373 KEKAPVVVIVGAENKGISLLVQKKCDYLLKIPLKGKTSSLNASVAAAISLCY 424 >gi|260063680|ref|YP_003196760.1| rRNA methylase [Robiginitalea biformata HTCC2501] gi|88783125|gb|EAR14298.1| rRNA methylase [Robiginitalea biformata HTCC2501] Length = 237 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 84/248 (33%), Gaps = 22/248 (8%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K+++S +QK ++ + G+ V L++ + LP Sbjct: 8 KRIRSLHQK-KYRIREGQFLAEGMKLVGELLDSGLEPVGLYSTAPE---------ELPGS 57 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 P+ + +V V P + + + LD V DP N+G + Sbjct: 58 QPITEGELRKASALVRPSGV-------LGVFPIPDPEPLTFEGWTLALDGVRDPGNLGTL 110 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R F ++ + + + ++ G++ + + ++ Sbjct: 111 IRLCDWFGIGELLCSPDTVDCYNPKVLQATMGSIARVRVVYKDLAETLDASGLPVYGASM 170 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + + L++G+E GL ++ + + G ++LNV+ AAA Sbjct: 171 EGEAIGGEQPL-----SPGILVMGSESHGLSGPVRDRLSQTWAIPSFGRAESLNVATAAA 225 Query: 271 VALYITQN 278 + LY + Sbjct: 226 ILLYEIRR 233 >gi|323342892|ref|ZP_08083124.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464004|gb|EFY09198.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 235 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 93/253 (36%), Gaps = 24/253 (9%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K ++K ++ + + + G H + A + + Sbjct: 7 QNDFVKHCTKLSKK-KYRDEHNEVLIEGEHLIQEA-------------NTAGIVKKTIGL 52 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + Q + + HQ + D ++ D V DP Sbjct: 53 TESDDVQITEHIAQKLSNTIS--GSHQFAIISKPQRELKEADRY------LICDGVQDPG 104 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A +F D +I ++ + + +S G++ HIP IR+ A+ ++ +W Sbjct: 105 NLGTIIRTAHSFGFDAVIVSETCVDEFNDKVIRSTQGSIFHIPVIRMPLD-VAIAQIKAW 163 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 Q+IK IA+++G+EG G+ + + ++LNV Sbjct: 164 NIPVYASYLGENTHNLQDIKTCPIAVVMGSEGSGVSDAVVDLCDGTVKIETS-QFESLNV 222 Query: 266 SNAAAVALYITQN 278 + A+A+ Y + Sbjct: 223 AIASAIICYTLRK 235 >gi|229159265|ref|ZP_04287289.1| tRNA/rRNA methyltransferase [Bacillus cereus R309803] gi|228624157|gb|EEK80959.1| tRNA/rRNA methyltransferase [Bacillus cereus R309803] Length = 212 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 9/209 (4%) Query: 79 ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRN 131 ++ + ++ P + +D++V E HQG+ + A L+ Sbjct: 1 MQIVLALAKENKIILQHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNE 58 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++LD + DPHN+G+I+R+A A GII KR + +A +AK+++GA+E+IP R Sbjct: 59 DPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVAR 118 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++NL+ + ++ G G + K N I L++G+EGKG+ E + Sbjct: 119 VTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFL 178 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M G + +LN S AA++ +Y Sbjct: 179 ITLPMVGKVTSLNASVAASLLMYEVYRKR 207 >gi|227545915|ref|ZP_03975964.1| rRNA methylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213549|gb|EEI81398.1| rRNA methylase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 292 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 97/276 (35%), Gaps = 28/276 (10%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP 88 Y + ++R + AL + L+ + +D Sbjct: 17 YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAADREPLSLLVEEPWLEGMKDTFDFIDG 76 Query: 89 H---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV P+ + ++ G L L + ++++ + V++++ D Sbjct: 77 RWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWPLPSVAEVCKSARRVAVMENIVDHT 136 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA++RSA A D ++ T A+ + G + IP+ RI+ D + + Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKHY 196 Query: 206 GFQT------------------------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 L+ P E DK+ALI G EG GL Sbjct: 197 WPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLALIFGTEGDGLS 256 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 T A + M + +LNV+ ++AVA Y T+ Sbjct: 257 HHTISRADLTVKIPMSHGVDSLNVAASSAVAFYATR 292 >gi|227329037|ref|ZP_03833061.1| putative methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 383 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 88/244 (36%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A N S I + + R + V + Sbjct: 139 RRQRQEETRVYGENACQALFKNRSEVIVRAWFLQEVTPRFRDALRWMAANRKAYHVVEEE 198 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ L ++ L+ V +PHN+G I+RS Sbjct: 199 ELIKASGTE-HHGGVCFLIKKRQGMDVREYLKTAGEHDCVLALEDVGNPHNLGGIMRSCA 257 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I + L + + G+ + SS Sbjct: 258 HFGVKGVLV-QDAALLESGAAVRTAEGGAEHVKAINADDFLSVLTEFRNAGYTIVTTSSH 316 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L + K ++LG EG GL + + G +++LN+S A + L Sbjct: 317 KGTVLSKATLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSE 376 Query: 276 TQNH 279 Sbjct: 377 WWRQ 380 >gi|87200913|ref|YP_498170.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM 12444] gi|87136594|gb|ABD27336.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM 12444] Length = 267 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 88/255 (34%), Gaps = 7/255 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----L 81 ++ K ++S + +H + G+ ++ A R LL + A Sbjct: 10 SNPTVKFVRSLRE-KKHRRRERKFLAEGLRLLTDA-REGGRLPEILLMAEGREAHPLLDE 67 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 A V +P + K+ GKE + S L + + +V + Sbjct: 68 LEQAVDAAGGEVIELPLDILSKVTGKENPQAVAGVFAEWDTSIRLIDRNAAPIWLVAHAM 127 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G +LR+A A G+I S +++ GA+ + + + Sbjct: 128 RDPGNLGTMLRTADAVGAGGLILIDDCVDPFSVEAVRASMGAIFTEKLAQARWD-EFIAW 186 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + Q + S P +++G E +GL + + M G Sbjct: 187 LRAGEGQLVAASLRDAVPYRGAPYVAPCFVMVGNESRGLPEDYELACDLRVTMPMKGRAD 246 Query: 262 ALNVSNAAAVALYIT 276 +LN + A AV Y Sbjct: 247 SLNAAVAGAVLAYEV 261 >gi|269795534|ref|YP_003314989.1| rRNA methylase [Sanguibacter keddieii DSM 10542] gi|269097719|gb|ACZ22155.1| rRNA methylase [Sanguibacter keddieii DSM 10542] Length = 280 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 59/299 (19%), Positives = 109/299 (36%), Gaps = 38/299 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ +S+++ K ++S + + S+ + G V A Sbjct: 1 MTEITSTRSDRV------------------KMVRSLSGRP-ARSRTGRFLVEGPQGVREA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV--PPQTIDKIV----GKEAVHQGL 114 + + + + T + R V P+ I+ + G AV Sbjct: 42 VRHRPEAVRDVYLTAESRDRYREIVADAEAARVYFHVTTPEVIEAMSPDSQGVLAVLDLP 101 Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 A P + R +L+ VL +V DP N GA++R+A A D ++ T S Sbjct: 102 APGDGPEAALDAALARAPRLVAVLSNVRDPGNAGAVIRAADAAGADLVVLTTNSVDIHSP 161 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK------------PLEQ 222 + +S +G+L H+P + L + + + G QT+ P Sbjct: 162 KVVRSTAGSLFHLPVVTGVPLDQVVAALSAHGLQTLAADGVGTHDLDELLDVAGSAPEGV 221 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HF 280 A + G E GL + A ++ + + G+ ++LN++ AA V LY + Sbjct: 222 PDLAAHSAWVFGNEAWGLTEDERGLADAVVRVPIRGLAESLNLATAATVCLYASSRAQR 280 >gi|171463286|ref|YP_001797399.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192824|gb|ACB43785.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 274 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 94/267 (35%), Gaps = 16/267 (5%) Query: 24 RRNHRDYKKMQSFN----QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 + + +K++++ + + L G+H V + + LL ++ L Sbjct: 8 SKENPLFKEIRNLQATGSKGQKSRMASGQALLEGIHLVQTWV--GDPALKTLLTSEVGLK 65 Query: 80 RLD------WDANLPHPFPVKTVPPQTIDKIVGKEAVHQ--GLALETAPLLSPTLDAVRN 131 L+ + V + D + + GL L+ Sbjct: 66 NLEISQAVYEHLEICPSTKVFQLDGALWDLLSDLVSAPHIAGLLDLPKSTLTTPQSIATL 125 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +++L V D N+G+ILR+A A I + S + ++ GA + + Sbjct: 126 DGDVVILARVQDAGNVGSILRTAAAAGFTQAIALTGCAHLWSTKVLRAGMGAH-KLLDLY 184 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + ++ ++ +A ++G+EG+G+ A Sbjct: 185 EGWSNQQVLSAITAPLLAATADAEQDLYSLKKDLLHPVAWVMGSEGQGISEDLLAQAKG- 243 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQN 278 + + +++LNVS AAA+ L+ T Sbjct: 244 VSIPIDPRVESLNVSTAAAICLFETLR 270 >gi|59712920|ref|YP_205696.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio fischeri ES114] gi|59481021|gb|AAW86808.1| 23S rRNA (Gm2251)-methyltransferase [Vibrio fischeri ES114] Length = 248 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 11/244 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104 N +++G+H A L + ++ K RL N F ++ +P +T+D Sbjct: 3 NDYIFGIHAAKAVLERDPARFIEVFVLKGRQDDRLLPILNELTQLGFKIQELPRKTLDDK 62 Query: 105 VGKEAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A HQG+ + + + LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-NGANHQGIIARVTPAKQLNEHDLDDIVSQTENPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSASMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGK-GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + Q +A+++GAE + K +T + + M G + +L VS A+ + L+ Sbjct: 182 DVFQSKLTGPLAIVMGAERRWHASLKHVKTCDDLIKIPMAGSVSSLKVSVASGICLFEAV 241 Query: 278 NHFA 281 A Sbjct: 242 RQRA 245 >gi|317488634|ref|ZP_07947177.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA] gi|325831627|ref|ZP_08164844.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1] gi|316912286|gb|EFV33852.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA] gi|325486498|gb|EGC88947.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1] Length = 279 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 62/277 (22%), Positives = 100/277 (36%), Gaps = 16/277 (5%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I L+D +L Y M + S + AL R + L Sbjct: 3 IIHLEDLDDPRL----AAYSGMTDAQLRDCPDSTHGLFIGESRKVIERALAAGVR-MRSL 57 Query: 72 LATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 + L + +D + FPV + + G E LA P L D Sbjct: 58 FMEEKWLDQTMPLVDSLLDGDPDFPVLVATREQFRALTGYEVTRGALAAFERPPLPRVED 117 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + +++ + VL+ V + NIGA+ RSA A D ++ T A+ + G + + Sbjct: 118 LLASARRVAVLEDVTNYTNIGAVFRSAAALGIDAVLVTPSCHDPLYRRAARVSMGTVFQV 177 Query: 188 PYIRISNLTDALQKMHSWGFQTIGL-------SSDSKKPLEQEIKNDKIALILGAEGKGL 240 P+ RI + + E+ DK+AL+LG EG GL Sbjct: 178 PWTRIGSERAWAAEGVPLLRSLGFSTAALALSDEAIFLHDERLRGCDKLALVLGTEGDGL 237 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P T + M + +LNV+ A+AVA + + Sbjct: 238 APSTIANCDYTVKIPMDHDVDSLNVAAASAVAFWELR 274 >gi|311746529|ref|ZP_07720314.1| RNA methyltransferase, TrmH family [Algoriphagus sp. PR1] gi|126575429|gb|EAZ79761.1| RNA methyltransferase, TrmH family [Algoriphagus sp. PR1] Length = 249 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 92/245 (37%), Gaps = 10/245 (4%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K +++ +QK ++ Q + F+ G +V +N+ L+ + NL Sbjct: 6 TVKFIKTLHQK-KYRIQSQKFFVEGEKSVLEVINSGFLIDMILVTERFYERHEGKLKNL- 63 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + ++ I + AL + + ++L++ LD V DP N+G Sbjct: 64 -NAEILHATQNQLENIGQYRSNE--TALAVVNMKPNDRFSFPENELVIALDDVRDPGNLG 120 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A + ++ + + + + + +S+ G+ + + + Sbjct: 121 TIIRIADWYGIKNLLFSSQTADFYNPKVIQSSMGSFTRVNFYYGDLKEVFEEWGVPIYGA 180 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +G S+ + L++G E G+ + + + + G ++LNV+ A Sbjct: 181 YLGGSNIHELKSPAAG-----VLLMGNESNGISKELEPFVSKKLTIPGSGEAESLNVAIA 235 Query: 269 AAVAL 273 A+ Sbjct: 236 TAILC 240 >gi|330951485|gb|EGH51745.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae Cit 7] Length = 234 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 108/224 (48%), Gaps = 8/224 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ + + R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P LD S LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Q Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + +I+GAEGKG+R T+E + L M G + +LNVS Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVGLPMAGSVSSLNVS 230 >gi|239978462|ref|ZP_04700986.1| rRNA methylase [Streptomyces albus J1074] gi|291450358|ref|ZP_06589748.1| rRNA methylase [Streptomyces albus J1074] gi|291353307|gb|EFE80209.1| rRNA methylase [Streptomyces albus J1074] Length = 267 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 91/240 (37%), Gaps = 5/240 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + R G + A+ + LL ++ L + D Sbjct: 17 DYTDLTDVALRRRREPAEGLFIAEGEKVIRRAVEAGYT-LRSLLLSEKWLD-VMADVIEA 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV V P+ +++ G LA L D + ++ + VL+ + D N+G Sbjct: 75 ADAPVHLVTPELAEQVTGYHVHRGALAAMERKPLPDPADILTTARRVAVLEDIVDHANVG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A R+A A D ++ + R + K + GA+ +P+ R+ + + GF Sbjct: 135 AAFRNAAALGVDAVLLSPRCADPLYRRAVKVSMGAVLQLPWTRLPDWPAGAGLLGRHGFL 194 Query: 209 TIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 T + + +K+AL+ G EG GL P A + + M I +LNV Sbjct: 195 TAAFCLGDRSITLDELAARRPEKLALMFGTEGDGLTPGALAAADTWVRIPMDAGIDSLNV 254 >gi|15606763|ref|NP_214143.1| rRNA methylase SpoU [Aquifex aeolicus VF5] gi|3915169|sp|O67577|TRMH_AQUAE RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName: Full=tRNA [Gm18] methyltransferase gi|75765771|pdb|1ZJR|A Chain A, Crystal Structure Of A. Aeolicus TrmhSPOU TRNA MODIFYING Enzyme gi|2983982|gb|AAC07528.1| rRNA methylase SpoU [Aquifex aeolicus VF5] Length = 211 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 53/153 (34%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L++ D+V + HN AI+R+ A + + Sbjct: 22 RQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKKAKINEGITQGSHKWVFIE 81 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + L+ + S + L++G E +G+ P+ E A Sbjct: 82 KVDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIAD 141 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G+ ++LNVS A + LY Q + Sbjct: 142 KKIVIPMYGMAQSLNVSVATGIILYEAQRQREE 174 >gi|317493379|ref|ZP_07951801.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918772|gb|EFV40109.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 371 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 78/244 (31%), Gaps = 7/244 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V + Sbjct: 127 RRQRAEETRVYGENACQALFASRPDAIVRAWFVQSVTPRFREALRWMAANRKAYHVVDDE 186 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ L ++ ++ L+ V +PHN+G I+R+ Sbjct: 187 ELTKASGTE-HHGGVCFLIKKRNGLDARSYLKTAADTDCVLALEDVGNPHNLGGIMRTCA 245 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ A + + GA + + S Sbjct: 246 HFGVKGLMVQDASMLESGAAVRTAEGGAEHIQAIDADGFDGALDEFRRAGYTIVTTSSHK 305 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 PL + K+ L+LG E GL + + G +++LNVS A + L Sbjct: 306 GTTPLTKATLPKKMVLVLGQERDGLSETVMQQGDLSLSIGGTGQVESLNVSVATGILLAE 365 Query: 276 TQNH 279 Sbjct: 366 WWRQ 369 >gi|315655513|ref|ZP_07908412.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 51333] gi|315490168|gb|EFU79794.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 51333] Length = 275 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 92/262 (35%), Gaps = 16/262 (6%) Query: 26 NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLD 82 ++ +++ + + + G VS L + + + L T+ A Sbjct: 9 DNPGSDRIRKVAGLSRRSARLRSGMTRVEGPQAVSELLRSAPQGAVTDLYVTEAGAATRP 68 Query: 83 WDANLPH------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 + TV PQ + QG P++ L + Sbjct: 69 ELLEFAQSTVSAGGLHIHTVSPQVEKTLSDA---AQGWIAVARFEAFPSVTGSPEGNLAL 125 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-- 194 +L DP N G ++R A A + + + + S + +++ G++ H+P R + Sbjct: 126 ILPATQDPGNAGTLIRLADACGASTVFMGQDCADATSPKVIRASVGSVFHVPTPRFQDLA 185 Query: 195 --LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + + + ++ N K+A ++G E GL + + Sbjct: 186 AVVKALRAEGWTIVGTSLSGDVMLTPVTAGTWSNKKVAWVMGNEAHGLDATEESWCDVLV 245 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M G ++LNV++AA + L+ Sbjct: 246 SIPMFGRAESLNVTSAATLCLW 267 >gi|221632708|ref|YP_002521929.1| RNA methyltransferase, TrmH family, group 3 [Thermomicrobium roseum DSM 5159] gi|221156305|gb|ACM05432.1| RNA methyltransferase, TrmH family, group 3 [Thermomicrobium roseum DSM 5159] Length = 261 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 12/249 (4%) Query: 42 HTSQPEN--LFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKT 95 QP +LYG + V+ AL R+ +L +A PV Sbjct: 2 RRLQPGRPSEYLYGRNAVAEALR-GRRRHRRLFVASGIETHGRIVALMEAARVRGIPVIV 60 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPT---LDAVRNSQLLMVLDHVNDPHNIGAILR 152 +P +D++VG HQG+ LET+P L ++++LDH+ DP NI +LR Sbjct: 61 IPRSELDRMVG-SVNHQGVVLETSPYPYVDFATLLDPAPESIVLLLDHLQDPQNIATLLR 119 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A A G++ +R + + + +++GA+EH+ ++NL A+ + G+ + L Sbjct: 120 TAEAAGVRGVVLPERRAAGITPAVVNASAGAVEHLQITLVTNLARAVDTLREHGYWIVAL 179 Query: 213 SS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + L + + L++GAEG GL P + A + M G I++LN + A ++ Sbjct: 180 EPGPNAQSLFRAPLPLPLVLLVGAEGHGLSPVLLKRADVQVIIPMLGQIESLNAAVAGSI 239 Query: 272 ALYITQNHF 280 ALY Sbjct: 240 ALYEIVRRL 248 >gi|317131314|ref|YP_004090628.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense YUAN-3] gi|315469293|gb|ADU25897.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense YUAN-3] Length = 263 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 49/260 (18%), Positives = 93/260 (35%), Gaps = 5/260 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ + + + L G + AL + R + + T A + Sbjct: 6 SRDNPLVRDYVRLRENRAFRRETGRFVLEGARLLGDALESGVR-METVFFTGEACEKHPA 64 Query: 84 DANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 V V K+ A A + LD + L+++ Sbjct: 65 LLASARDGGARVCLVGDAVAAKLADTAAPQGVFAAAFMLDKAFALDKINLGGAYAALENI 124 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+GA+LR+A A G++ + + + + +++ GA+ + + +L AL Sbjct: 125 RDPGNLGAVLRTAEALGLSGVLLSAGCADIYAPKVVRASMGAVFRTAFFQTEDLPAALSL 184 Query: 202 MHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + G QT+ + L Q + +G EG GL + + M G Sbjct: 185 LREKGLQTLAALAGGTTRLLTQLDLRGGVVAAIGNEGAGLSDACVDACD-PFTIPMKGRA 243 Query: 261 KALNVSNAAAVALYITQNHF 280 ++LN + AAA+ L+ Sbjct: 244 ESLNAAAAAAIILWEIMRSR 263 >gi|261822727|ref|YP_003260833.1| methyltransferase [Pectobacterium wasabiae WPP163] gi|261606740|gb|ACX89226.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium wasabiae WPP163] Length = 383 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 88/244 (36%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A N S I + + R + V + Sbjct: 139 RRQRQEETRVYGENACQALFKNRSEVIVRAWFLQEVTPRFRDALRWMAANRKAYHVVEEE 198 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ L + ++ L+ V +PHN+G I+RS Sbjct: 199 ELIKASGTE-HHGGVCFLIKKRQGMDVREYLKTAGENDCVLALEDVGNPHNLGGIMRSCA 257 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I + L + G+ + SS Sbjct: 258 HFGVKGVLV-QDAALLESGAAVRTAEGGAEHVKAINADDFLSVLAEFRHAGYTIVTTSSH 316 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L Q K ++LG EG GL + + G +++LN+S A + L Sbjct: 317 KGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSE 376 Query: 276 TQNH 279 Sbjct: 377 WWRQ 380 >gi|226364458|ref|YP_002782240.1| RNA methyltransferase [Rhodococcus opacus B4] gi|226242947|dbj|BAH53295.1| putative RNA methyltransferase [Rhodococcus opacus B4] Length = 278 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 100/253 (39%), Gaps = 7/253 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ + GV L + I L RL+ A Sbjct: 27 DFRDLNSSDRRPDLPEGKGLVIAEGVLVAQRLLASRFDPIALL----GVDRRLEELAGDL 82 Query: 89 HPFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 V + ++VG LA P D + +S+ + VL+ VND N Sbjct: 83 DGVDVPYYRTTADVMAEVVGFHLNRGVLAAARRPAPLELPDVLEHSRTVAVLEGVNDHEN 142 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G++ R+A D ++ K + + + G + +P+ ++ L + G Sbjct: 143 LGSMFRNAAGLGVDAVVFGKGCADPLYRRAVRVSMGHVLRVPFAHVTKWPHDLDALRERG 202 Query: 207 FQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 FQ I L+ + + + +K+AL+LGAEG GL A + M +LNV Sbjct: 203 FQLISLTPNPGAVTLAEAMTGEKVALLLGAEGPGLTEHAMRATDIRARIPMAPGTDSLNV 262 Query: 266 SNAAAVALYITQN 278 + AAA+A Y Sbjct: 263 ATAAAMAFYERVR 275 >gi|254458669|ref|ZP_05072093.1| tRNA/rRNA methyltransferase [Campylobacterales bacterium GD 1] gi|207084435|gb|EDZ61723.1| tRNA/rRNA methyltransferase [Campylobacterales bacterium GD 1] Length = 250 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 100/230 (43%), Gaps = 7/230 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG + V L + S ++ +L + + + ++ +I Sbjct: 20 LYGRNVVVEVLQDSSVEVHKLHMASSNKPDGAIKTILALAKTRKIEITYHEKSSLSRISK 79 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+A++ + +++ L+ LD + +P N+G I+RS A + DGII Sbjct: 80 NAKQDQGVAVDIIAQTYKSAHEIKDMKSFRLIALDGIQNPQNLGMIIRSCAAGNVDGIIL 139 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 K+ S S ++ K++SG L +P + L + + + LSS +K + + Sbjct: 140 PKKSSAKISPLVIKASSGTLFKLPIYYCNTLDEIFPDLDADTRIYS-LSSHAKTSIYDVV 198 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +K +LG E G+ P+ ++ + M +++LNV+ A++ + Sbjct: 199 PTEKSIFVLGNESDGVSPEVEKLCNDSISIPMQRGVESLNVAVTASLLAF 248 >gi|46445775|ref|YP_007140.1| hypothetical protein pc0141 [Candidatus Protochlamydia amoebophila UWE25] gi|46399416|emb|CAF22865.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 249 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 107/256 (41%), Gaps = 17/256 (6%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 H K + + SR+ + + L L G + L+ + +++ T L ++ Sbjct: 10 QHPFVKHLVKLRENSRYRLEHKALILEGSKPIREVLS----FVKKIIYTSAYAPYLTFE- 64 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 F V + KI G + +G+ E +L + +Q ++VLD +NDP Sbjct: 65 ----GFEKWQVTEGIMKKISG-NSTPEGVIAEIQMPPFSSL---KQAQNILVLDGINDPG 116 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ++R+A+AF +GI + + +SA GA H + L+ + Sbjct: 117 NLGTLMRTALAFGWNGIYLLPTSCDPYNEKVLRSARGA--HFKIPLRRGNINELELLAKQ 174 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G ++ + L+ + + LI+G E G P+ + A + M G +++LNV Sbjct: 175 GNFQTLVADLKGQILKSTVSKKRKILIMGNEAHGPSPEVFKFA-EPICIPMSGEMESLNV 233 Query: 266 SNAAAVALYITQNHFA 281 + A + LY N Sbjct: 234 AVAGGILLY-ALNQMN 248 >gi|304392320|ref|ZP_07374261.1| rRNA methylase [Ahrensia sp. R2A130] gi|303295424|gb|EFL89783.1| rRNA methylase [Ahrensia sp. R2A130] Length = 285 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 89/266 (33%), Gaps = 11/266 (4%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDW 83 + K +++ K ++ + G AL+ L A + R Sbjct: 18 NPRVKSIRALAMK-KNRDREGLFIAEGEKLARDALDGGWHIDTLLYAKSATDDERRREGL 76 Query: 84 D----ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 + V + + I ++ +++ + + +VLD Sbjct: 77 ETLAVKVRARGGDVLLTNAKVLTAITKRDNSQAVVSVLKSQTTDAAKITPQGDTCWLVLD 136 Query: 140 HVNDPHNIGAILRSAVAFSCDGII---TTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 V DP N+G I+R+A A G++ T E+ + A + R L Sbjct: 137 RVRDPGNLGTIIRTADALGVAGVVLVGETTDPFGLEAVRATMGSLFAKPLVRLSRADYLV 196 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 A G + + + + L++G E +GL + + +A + M Sbjct: 197 LAESWKAGGGHIVGTHLAGAVDHRTIDYAAKPLLLLMGNEQQGLDDEMAASCDHLALIAM 256 Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282 G +LN++ A + + ++H K Sbjct: 257 GGAADSLNLAVATGIVTFAARSHALK 282 >gi|320459501|dbj|BAJ70122.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 330 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 74/306 (24%), Positives = 133/306 (43%), Gaps = 32/306 (10%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS--RHTSQPENLFLYGVHTVSAALN 62 + K ++++ ++ AK R + ++ + S + +YG ++V AL Sbjct: 25 TPKAEDRVYH--KAYKAKKVAERRQMADPRLAARRRVDKFASADTSDLVYGRNSVLEALR 82 Query: 63 NPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + R + + +D+I + HQG+ L+ Sbjct: 83 VG-VPSSTLYIMSRIEHDDRTREIVKIAGMNGLHMLEADRLEMDRIA-RSGNHQGVILKV 140 Query: 119 APLLSPTLD---------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 P +L+ + L + LD V DP N+GA++RSA AF Sbjct: 141 DPFQYSSLNELADRAEKKAKAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAF 200 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +G+I +R S S +A K ++GA H+P R+ NLT AL+ + G+ +GL Sbjct: 201 GANGVILPERRSASVNAAAWKVSAGAAAHMPVARVVNLTKALEGLKERGYYVVGLDGGGD 260 Query: 218 KPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K + + +D + ++LG+EG GL +ET ++A + + +++LN S AA ++LY Sbjct: 261 KLVGETGFESDPLVVVLGSEGSGLGRLVRETCDAIAGIPISSSVESLNASVAAGISLYAV 320 Query: 277 QNHFAK 282 N K Sbjct: 321 SNARRK 326 >gi|213693319|ref|YP_002323905.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524780|gb|ACJ53527.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 333 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 74/306 (24%), Positives = 133/306 (43%), Gaps = 32/306 (10%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS--RHTSQPENLFLYGVHTVSAALN 62 + K ++++ ++ AK R + ++ + S + +YG ++V AL Sbjct: 28 TPKAEDRVYH--KAYKAKKVAERRQMADPRLAARRRVDKFASADTSDLVYGRNSVLEALR 85 Query: 63 NPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L + R + + +D+I + HQG+ L+ Sbjct: 86 VG-VPSSTLYIMSRIEHDDRTREIVKIAGMNGLHMLEADRLEMDRIA-RSGNHQGVILKV 143 Query: 119 APLLSPTLD---------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 P +L+ + L + LD V DP N+GA++RSA AF Sbjct: 144 DPFQYSSLNELADRAEKKAKAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAF 203 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 +G+I +R S S +A K ++GA H+P R+ NLT AL+ + G+ +GL Sbjct: 204 GANGVILPERRSASVNAAAWKVSAGAAAHMPVARVVNLTKALEGLKERGYYVVGLDGGGD 263 Query: 218 KPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K + + +D + ++LG+EG GL +ET ++A + + +++LN S AA ++LY Sbjct: 264 KLVGETGFESDPLVVVLGSEGSGLGRLVRETCDAIAGIPISSSVESLNASVAAGISLYAV 323 Query: 277 QNHFAK 282 N K Sbjct: 324 SNARRK 329 >gi|50122437|ref|YP_051604.1| putative methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|49612963|emb|CAG76414.1| putative tRNA/rRNA methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 383 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 88/244 (36%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A N S I + + R + V + Sbjct: 139 RRQRQEETRVYGENACQALFKNRSEVIVRAWFLQEVTPRFRDALRWMAANRKAYHVVEEE 198 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ L ++ L+ V +PHN+G I+RS Sbjct: 199 ELIKASGTE-HHGGVCFLIKKRQGMDVREYLKTAGEHDCVLALEDVGNPHNLGGIMRSCA 257 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I + L + S G+ + SS Sbjct: 258 HFGVKGVLV-QDAALLESGAAVRTAEGGAEHVKAINADDFLSVLAEFRSAGYTIVTTSSH 316 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L + K ++LG EG GL + + G +++LN+S A + L Sbjct: 317 KGTVLSKATLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSE 376 Query: 276 TQNH 279 Sbjct: 377 WWRQ 380 >gi|167645570|ref|YP_001683233.1| RNA methyltransferase [Caulobacter sp. K31] gi|167348000|gb|ABZ70735.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter sp. K31] Length = 278 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 89/272 (32%), Positives = 145/272 (53%), Gaps = 5/272 (1%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-FQL 71 + + K RD++ N K +++G H V AAL+NP+R +L Sbjct: 3 SHSERNDRKKPSSPGRDFRSKPRENNKFSKGQGDAKDWIWGTHAVEAALSNPARPAPKRL 62 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--V 129 LAT + RL + + + I + + AVHQG+AL+ + ++ Sbjct: 63 LATADRAKRLAPNLAKAPFLTI--MEGAEIARQLPTGAVHQGVALKIDEPEALSVYDLGT 120 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 LL++LD + DP NIGAI RSA AF G+I R++P+ + VLAK+A GA++ I Y Sbjct: 121 PAQGLLVMLDQITDPQNIGAIFRSAAAFGARGVILQDRHAPALTGVLAKTAVGAVDKIAY 180 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R+ NL+ AL+++ G++ + L+ ++++ L+Q + L+LG+EG+G+R E Sbjct: 181 ARVVNLSRALEELADLGWRAVALAGEAQQTLDQVLDGRPTVLVLGSEGEGVRRLVSEHCD 240 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +M + MPG ++LNVS AAAVALY + Sbjct: 241 AMGKIAMPGGFESLNVSAAAAVALYEASKVRS 272 >gi|330444231|ref|YP_004377217.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58] gi|328807341|gb|AEB41514.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58] Length = 266 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 44/261 (16%), Positives = 87/261 (33%), Gaps = 9/261 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW- 83 +++ K+ + K + + E + GV + AL+ LL T N + Sbjct: 6 KHNPKIKE--ALALKRTKSRKGEFFLVEGVREIRKALDAGY-PFQHLLCTANLSEEEESL 62 Query: 84 -DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL---LSPTLDAVRNSQLLMVLD 139 + +++ ++ KE +A+ ++++ Sbjct: 63 CQEAAKRSIAIFFFHEESLSELSYKENSGHVIAVVRKTFLSTQEFLASRRNPVPFYLIIE 122 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V P N+GA+LR+ DG+I + + +S+ G + +P + S Sbjct: 123 QVEKPGNVGALLRTGDGVGVDGVILCDPIVDLYNPNVIRSSLGTVFTLPVLCASLPEVLQ 182 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + +KK +E A++ G+E GL L M G Sbjct: 183 LIRKESWEVYVTS-PRAKKLYFEETFLAPTAIVFGSEKDGLMQPWFHERFKEITLPMRGK 241 Query: 260 IKALNVSNAAAVALYITQNHF 280 +LN+S + A Y Sbjct: 242 ADSLNLSTSVAAIAYEVLRQR 262 >gi|265756534|ref|ZP_06090740.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263233722|gb|EEZ19337.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 251 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 97/259 (37%), Gaps = 22/259 (8%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K + + + G V L L+AT N + Sbjct: 6 KIKYIRSLELKKK-RKEEQVFVAEGHKLVGDLL--GYFPCKLLIATSNW-------LKIN 55 Query: 89 HPF---PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 HP + V + + + ++ + LA+ P + +++S L + LD V DP Sbjct: 56 HPVTANEIIEVTQEELSRASLQKTPQEVLAVFVQPFYDLNPEVIKSS-LCLALDDVQDPG 114 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R A F + I + + + ++ GAL + S Q + S Sbjct: 115 NLGTIIRLADWFGIEHIFCSAGTADVYNPKTVQATMGALARVKVHYCSLP----QLIESL 170 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IK 261 + + S + E + +++G EGKG+ P+ ++ ++ + Sbjct: 171 ADIPVYGTFLSGNIIYAESLSAHGLIVMGNEGKGVSPEVEKLINKKLYIPNYPQERETSE 230 Query: 262 ALNVSNAAAVALYITQNHF 280 +LNV+ A AV + Sbjct: 231 SLNVAIATAVVCSEFRRRL 249 >gi|332663063|ref|YP_004445851.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM 1100] gi|332331877|gb|AEE48978.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM 1100] Length = 253 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 84/247 (34%), Gaps = 9/247 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + + QK + S+ + G V + P ++ +LA L Sbjct: 6 KIKYITAL-QKKKFRSELQCFLAEGDKIVRELVAFPQWELECILAVPEWLENHRGLFA-G 63 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + ++ ++KI + +Q +A+ + ++ L + LD + DP N+G Sbjct: 64 RKIEIISITTAELEKISTLQTPNQVMAI-VKMPSEFDWNTHFSTDLALYLDGIQDPGNLG 122 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ILR A F + + + + ++ G+ I + + + Sbjct: 123 TILRIADWFGILQVFLSPDCVELYNPKVIQATMGSFLRIKTAIVELPALKVGIPGLTTYG 182 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNVS 266 + + + LI+G EGKG+R + + G ++LN Sbjct: 183 ALLSGENVFETKV----QHPALLIIGNEGKGIREEYISLIDRAISIPRHADGGAESLNAG 238 Query: 267 NAAAVAL 273 A + Sbjct: 239 VATGIIC 245 >gi|229074153|ref|ZP_04207199.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-18] gi|229094814|ref|ZP_04225819.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29] gi|229100891|ref|ZP_04231695.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28] gi|229113768|ref|ZP_04243203.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3] gi|228669639|gb|EEL25046.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3] gi|228682470|gb|EEL36543.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28] gi|228688557|gb|EEL42430.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29] gi|228708923|gb|EEL61050.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-18] Length = 212 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 55/209 (26%), Positives = 100/209 (47%), Gaps = 9/209 (4%) Query: 79 ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRN 131 ++ + ++ P + +D++V E HQG+ + A L+ Sbjct: 1 MQIVLALAKENKIILQHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNE 58 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++LD + DPHN+G+I+R+A A G+I KR + +A +AK+++GA+E+IP R Sbjct: 59 DPFFLILDEIEDPHNLGSIMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEYIPVAR 118 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++NL+ + ++ G G + K I L++G+EGKG+ E + Sbjct: 119 VTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFL 178 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M G + +LN S AA++ +Y Sbjct: 179 ITLPMVGKVTSLNASVAASLLMYEVYRKR 207 >gi|148240081|ref|YP_001225468.1| rRNA methylase [Synechococcus sp. WH 7803] gi|147848620|emb|CAK24171.1| rRNA methylase [Synechococcus sp. WH 7803] Length = 291 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 52/294 (17%), Positives = 91/294 (30%), Gaps = 30/294 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I++ + E I S R + K+++S K+ + + L H V Sbjct: 1 MPVIARAEGEPISS----------RRNPLIKRIRSLQSKA-GRESEQCVLLEVTHQVQEL 49 Query: 61 LNNPS---RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L + L+ D A LP P V+ + P+ + + Sbjct: 50 LAQGEAWTDPLSVLVTPLWLQRHRDLLAQLPGPVQVQLMTPEALG---AALTTVHPDGVA 106 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS------ 171 L A + ++ LD + DP N+G +LR+A+A + + P Sbjct: 107 CLWPLKSLPAAGPHPNFVLALDRLQDPGNVGTLLRTALAADVEQVWMGAGADPLGSKVVR 166 Query: 172 -------ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + A + +P Q Sbjct: 167 SAAGALLSMPYQRFGPTDAQGVEQLATALKDARTRGLQVVATLVPDAAAGLPVQPYWQLD 226 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+LG EG GL P+ + L +++LNV+ AA L + Sbjct: 227 WCRPTVLVLGNEGAGLHPQLLGCCSHGVTLPHGRKVESLNVAAAAVPLLLERRR 280 >gi|163787545|ref|ZP_02181992.1| rRNA methylase [Flavobacteriales bacterium ALC-1] gi|159877433|gb|EDP71490.1| rRNA methylase [Flavobacteriales bacterium ALC-1] Length = 245 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 42/254 (16%), Positives = 95/254 (37%), Gaps = 22/254 (8%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S + K ++ + + GV +S L N ++ +L T +L ++A+ Sbjct: 6 QIKLIKSLSLK-KNRQELGLFIVEGVKGISEFL-NSDFQLEKLFTT-----KLIFEASSD 58 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V + KI + + LA+ P + + L++ LD + DP N+G Sbjct: 59 QTI---EVSETELKKISSLKNPNTALAIFKTPKPTLPENVG----LIIALDAIRDPGNLG 111 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R + ++ + ++ + ++ G+L + + + Sbjct: 112 TIIRLCDWYGVKDLVCSTNTVDCYNSKVVQATMGSLTRVNVNYLDL-----ESYLESTKV 166 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNV 265 + + + + + ++ +ILG E G+ + G ++LNV Sbjct: 167 DVFGAFMNGENIYATNLPNEGVIILGNEANGISEIIASKVDRQITIPQFGENKSTESLNV 226 Query: 266 SNAAAVALYITQNH 279 +NA A+ L Sbjct: 227 ANATAIILSEFSRR 240 >gi|157413860|ref|YP_001484726.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9215] gi|157388435|gb|ABV51140.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9215] Length = 276 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 93/272 (34%), Gaps = 18/272 (6%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 +N+ K+ ++F ++ + + G H + L + ++L T+ L + Sbjct: 2 KITSKNNNLVKRFRTF-KRGSSPKHQDFFCIEGTHLIEELLKSGKNP-SKILVTEKWLRK 59 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 + H + V + + + G+A P ++VLD Sbjct: 60 NQNLSRKFHQSLINIVTEEVLASAISTI-NPDGIAALVEISTIPNYKFDTKDDFVLVLDR 118 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSP-------------SESAVLAKSASGALEHI 187 + DP N+G++ R+A+A D I P L + Sbjct: 119 IQDPGNMGSLFRTALAAGVDAIFLAGGAHPLGQKVLRASSGAVFHLPFLRFDGTEEEILN 178 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 ++ + + S KP + + ALILG EG+G+ K QE Sbjct: 179 SLLKSLSELSNVGFKIFSTSSNNKSSKKPSKPYWEVDWSRSTALILGNEGQGIHKKIQEA 238 Query: 248 ATSMAHLHMPGIIKALNVS-NAAAVALYITQN 278 + ++++LNV+ A + L + Sbjct: 239 FNETITIPHSELVESLNVACVAVPLLL-ERKR 269 >gi|154497125|ref|ZP_02035821.1| hypothetical protein BACCAP_01418 [Bacteroides capillosus ATCC 29799] gi|150273524|gb|EDN00652.1| hypothetical protein BACCAP_01418 [Bacteroides capillosus ATCC 29799] Length = 258 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 61/266 (22%), Positives = 104/266 (39%), Gaps = 33/266 (12%) Query: 37 NQKSRHTSQPENL---FLYGVHTVSAALNNP--SRKIFQLLATKNALARLDWDANLPHPF 91 ++ +PE + G + V AL KIF +A + Sbjct: 2 REQKDRRREPEAEADGMIEGRNAVIEALRAGTPIDKIFLARGETDATLGHIASSAREKGI 61 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144 V + +D + A HQG+ A T+D + L++V D ++DP Sbjct: 62 VVVEADRRKLDGMSRTHA-HQGVIAMAAVREYATVDDILNAAREKGEPPLIVVCDELSDP 120 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+GA++R+A G+I KR S +AV+AK+++GA+ ++P R+ NLT L+++ Sbjct: 121 HNLGAVIRTAECAGAHGVIIPKRRSAGLTAVVAKTSAGAVSYVPVARVPNLTALLKELKD 180 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----- 259 G G ++D L A+++G+EG G+ E + M G Sbjct: 181 EGLWIFGTAADGNTTLYDADLKGPAAIVIGSEGDGMGRLVSEQCDFKVSIPMKGKLNSLN 240 Query: 260 -----IKALNVSNAAAVALYITQNHF 280 + LY Sbjct: 241 ASAAAA----------ILLYEAVRQR 256 >gi|268611052|ref|ZP_06144779.1| hypothetical protein RflaF_16350 [Ruminococcus flavefaciens FD-1] Length = 269 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 87/236 (36%), Gaps = 4/236 (1%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + AL + I L K + PV T Q + + G Sbjct: 33 MFIAESPKVIRTALGSGYEPISLLTERKYIDGQAKDIIEKCGDIPVYTASSQQLTALTGY 92 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + L L + S + VL+ V + NIGA+ RSA A D ++ T Sbjct: 93 KLTQGVLCAMKRKRLPKAEYILAKSVRVAVLEDVMNQTNIGAVFRSAAALGFDAVLLTPS 152 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN- 226 S + + G + +P+ + N + + + ++ Sbjct: 153 SSDPLFRRSVRVSMGTVFQLPWTYLENGSPDYIGELRNAGFVTAAMALRRDTIKINDPRL 212 Query: 227 ---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 D++A++LG EG+GL+ +T ++ + M + +LNV+ A+AVA + H Sbjct: 213 ASVDRLAVLLGTEGEGLKDETIDSCDYTIKIPMSHGVDSLNVAAASAVAFWQLGKH 268 >gi|262277080|ref|ZP_06054873.1| SpoU rRNA Methylase family [alpha proteobacterium HIMB114] gi|262224183|gb|EEY74642.1| SpoU rRNA Methylase family [alpha proteobacterium HIMB114] Length = 242 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 62/238 (26%), Positives = 115/238 (48%), Gaps = 7/238 (2%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + +L G HTV+ AL N + IF++ + L + Q IDK+ Sbjct: 8 KEFWLGGKHTVNHALKNENNAIFKVFLSSKNNINEIPKKYLN---LISIKSHQEIDKLFS 64 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQL----LMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + HQG A++ + +R + + +++L++V D NIG+I+RS VAF + Sbjct: 65 TKINHQGYAVKIKERKTFQFSELRKNIIKYDEIIILNNVFDDRNIGSIIRSCVAFDVKCL 124 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K + S ++ KSASG +E+I +SNL + ++ + + L +S K + Sbjct: 125 IVEKNNFRAGSELMNKSASGGMEYIDIYLVSNLNNVIKVLQQNAYWVYSLDGESNKNIFD 184 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 N K A I G+EG G++ ++ + + + + I++LN+SN+ ++ L + Sbjct: 185 IKFNKKSAFIFGSEGDGIKSLVKKNSDEIISIPINKKIESLNLSNSVSIVLSNIKKAR 242 >gi|294776509|ref|ZP_06741983.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510] gi|294449638|gb|EFG18164.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510] Length = 268 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 85/233 (36%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + + R + +S AL+ + + K+ P Sbjct: 20 LTEAQLRQRMEPGKGVFIAESPNVISRALDAGYEPLALMCERKHISGSAAHIIKRCGDVP 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + + + G L P+L + R+++ ++V+D V D NIGAI R Sbjct: 80 VYTGDRELLATLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIFR 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D ++ T+ + + + G++ +P+ ++ L K Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWLNGTIGDLNKFGFRTAAMALT 199 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 ++A+++G EG GL KT A + + M + +LNV Sbjct: 200 DDSISIDHPILAAEPRLAIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLNV 252 >gi|294055486|ref|YP_003549144.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis DSM 45221] gi|293614819|gb|ADE54974.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis DSM 45221] Length = 188 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 74/157 (47%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 L ++ L+++L+ V DPHN+GA LR+A ++ + S + + + G Sbjct: 31 FNLIEQTDNPLILLLEGVQDPHNLGACLRTASGAGVTALLAPMKGSCGITHTVRDVSCGG 90 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + +P+++I N + L+K G Q IG S + L +ILG+EG GLR Sbjct: 91 ADEVPFLKIKNTSQLLRKFRDQGIQIIGTSDRGTEMLYDTDLTGPTCIILGSEGWGLRKV 150 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T + + + M G + LNVS +A V LY Sbjct: 151 TGDLCDQLVSIPMAGKVDCLNVSVSAGVCLYEAVRQR 187 >gi|315503266|ref|YP_004082153.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5] gi|315409885|gb|ADU08002.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5] Length = 294 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 90/243 (37%), Gaps = 8/243 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDK 103 G V AL + +L T AL R A PV V + Sbjct: 39 AGRFLAEGPQAVREALARAGTVV-ELFGTPAALDRYADLAAAAARADVPVSEVTDDALAA 97 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + A +A+ + R +L+ VL + DP N G +LR+A A +I Sbjct: 98 LTETVAPQGLVAVCRHLDVPLEQAVARGPRLVAVLVGIRDPGNAGTVLRTADAAGAGAVI 157 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH----SWGFQTIGLSSDSKKP 219 + ++++G+L H+ +R ++ A++ + T SD Sbjct: 158 FAGEAVDPYNGKCVRASAGSLFHVDVVRAADPLAAVEALRAAGLEILATTGYGDSDLDDL 217 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN- 278 + A + G+E GL + A + + + G ++LN++ AAAV LY + Sbjct: 218 ADAGRLAAPTAWLFGSEAHGLPDELTGAADARVRVPLHGRAESLNLAAAAAVCLYSSARA 277 Query: 279 HFA 281 A Sbjct: 278 QRA 280 >gi|262197042|ref|YP_003268251.1| RNA methyltransferase, TrmH family, group 3 [Haliangium ochraceum DSM 14365] gi|262080389|gb|ACY16358.1| RNA methyltransferase, TrmH family, group 3 [Haliangium ochraceum DSM 14365] Length = 267 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 70/250 (28%), Positives = 107/250 (42%), Gaps = 23/250 (9%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR--------LDWDANLPHPFPVKTVPPQTI 101 +YGV V L +R+I L + +R + V+ + + + Sbjct: 6 LVYGVGPVEELLGRRAREIAVLYVNPSRRSRQRAGDPVAAVAEQARRRGVSVEELSREQL 65 Query: 102 DKIV--------GKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIG 148 D +V G HQG+ L+ + L + LD V DPHN+G Sbjct: 66 DALVAGRGDAEDGGRVHHQGVVALVGAFEYAALEDLIAAPRQRPALFVALDSVTDPHNLG 125 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGF 207 AI+RSA DG+I K + S V+ K ++GA E I +++NL AL++ + + Sbjct: 126 AIVRSAHVLGADGVILPKDRAAQVSGVVTKVSAGATEQIAIAQVTNLARALEQLKQAEVW 185 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVS 266 + + L + L+LGAEG GLRP T + + M G + +LNVS Sbjct: 186 IAGLAAGEGATSLPAFDATGALCLVLGAEGTGLRPLVARTCDFLIEIPMLGAGVGSLNVS 245 Query: 267 NAAAVALYIT 276 AA VALY Sbjct: 246 VAAGVALYEV 255 >gi|269137918|ref|YP_003294618.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202] gi|267983578|gb|ACY83407.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202] gi|304557970|gb|ADM40634.1| hypothetical tRNA/rRNA methyltransferase YfiF [Edwardsiella tarda FL6-60] Length = 393 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 77/246 (31%), Gaps = 9/246 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + + R + V Sbjct: 146 RRQRAEETRVYGENACQALFASRPEAIVRAWFLQAVTPRFREALRWMAANRKAYHVVDDA 205 Query: 100 TIDKIVGKEAVHQGLALETAP------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + K G + H G+ A ++ L++V +PHN+G I+R+ Sbjct: 206 ELTKASGTD-HHGGVCFLIKKRRSLDAQQYLANQAEDAVDCVLALENVANPHNLGGIMRT 264 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 F GII + + A + + GA + S Sbjct: 265 CAHFGIRGIIAPESAALESGAAVRTAEGGAEHVQAIDAEDFSAALDTFRRAGYTIVTTSS 324 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L + KI L++G EG GL T + + G +++LNVS A + L Sbjct: 325 HKGTTQLHRATLPAKIVLVVGHEGDGLSDGTLQQGDLSVSIGGTGSVESLNVSVATGIML 384 Query: 274 YITQNH 279 Sbjct: 385 AEWWRQ 390 >gi|194751485|ref|XP_001958057.1| GF10725 [Drosophila ananassae] gi|190625339|gb|EDV40863.1| GF10725 [Drosophila ananassae] Length = 421 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 38/294 (12%), Positives = 93/294 (31%), Gaps = 28/294 (9%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + + +L + + + + + + L G + AL + L + K+ Sbjct: 119 NLEFVRLTLQDPLTSTLLTTVRSKKRRDKNRQIILEGRRLIQEALQCGLKMQTLLFSQKD 178 Query: 77 ALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 LA + + + VP + +A+ P + + Sbjct: 179 QLALVKEEVGKAQQGTGSKIYKVPQHDLKTWSSLVTPPGLMAIFDRPSDKGLESNLAEQE 238 Query: 134 LL--------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + +V D++ +P+N+G+I+R+ A C ++ T + + G Sbjct: 239 RVGTKPLPVTVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQF 298 Query: 186 HIPYIRISNLTD-----------ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 IP + + + + S ++ + + LI+G Sbjct: 299 RIPILDDVTWEELSNIIPPEVSSDCRVFIAENNLEKRESHETIDYADISDVGAQNFLIIG 358 Query: 235 AEGKGLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 E G+ ++ + I +LNV++A + L+ + + Sbjct: 359 GESHGVSEAAYRFKHLVGGKGKCVYIPLAAGIDSLNVASALTLLLFELRRKINQ 412 >gi|167754583|ref|ZP_02426710.1| hypothetical protein CLORAM_00085 [Clostridium ramosum DSM 1402] gi|167705415|gb|EDS19994.1| hypothetical protein CLORAM_00085 [Clostridium ramosum DSM 1402] Length = 238 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 97/251 (38%), Gaps = 19/251 (7%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K + QK ++ + + + G H V+ AL ++ ++ + + Sbjct: 7 NSTIKTLMKLKQK-KYRDEMKAYLVEGDHLVTEALKANQVELLISTKHIDSELEVLEVSE 65 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 + K+ ++ +A + R ++LD + DP N Sbjct: 66 E------------VMAKLAFTKSPQSIMAKCRMQKEIQLKEGRRY----LLLDDLQDPGN 109 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IG ++R+A+AFS D +I + + L +S GA H+ I + Q Sbjct: 110 IGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHLSCIYGNLTQLISQLQEKGV 169 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + K + + K+A ++G EG G+ P+ + ++ + I++LNV+ Sbjct: 170 VVIGSALENGKNIAQINRYS-KMAFVVGNEGNGMNPEVLAKCDDIGYIPIN-TIESLNVA 227 Query: 267 NAAAVALYITQ 277 A + +Y + Sbjct: 228 IAGGIMMYHFK 238 >gi|331006043|ref|ZP_08329383.1| tRNA/rRNA methyltransferase (SpoU) [gamma proteobacterium IMCC1989] gi|330420152|gb|EGG94478.1| tRNA/rRNA methyltransferase (SpoU) [gamma proteobacterium IMCC1989] Length = 266 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 102/249 (40%), Gaps = 19/249 (7%) Query: 45 QPENLF-----LYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKT 95 + + F L+G V L +P ++++ +++ + + V Sbjct: 13 RKKQFFNQVITLFGRKPVLEVLQDPKLTVYRVHLSESNKPQGIISEILEIAKKREIEVLY 72 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----------RNSQLLMVLDHVNDPH 145 Q + +I QG+ ++ + + + L+ LD + +P Sbjct: 73 HSKQALSRISKNAKQDQGVCIDILCPKHQSYEDFLASVSLSQSPDKTIRLIALDRITNPQ 132 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+RS A DG++ + + +++ K+++G L P + +LT AL + Sbjct: 133 NLGMIIRSVCAGKIDGLLLPSKGCATIDSLVVKASAGTLFKAPLLHCESLTGALHESKKQ 192 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G GLSS + + + + + + +LG E +G+ + + M +++LNV Sbjct: 193 GATVYGLSSHATQSISDKQTDQFVIYVLGNETEGMSQEISTLCDKRISIPMNNGVESLNV 252 Query: 266 SNAAAVALY 274 + A++ + Sbjct: 253 AITASLLAF 261 >gi|289450456|ref|YP_003475578.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185003|gb|ADC91428.1| RNA methyltransferase, TrmH family [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 267 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 53/262 (20%), Positives = 104/262 (39%), Gaps = 13/262 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + + YK+ + + + L G+ A+ + + + +A R + Sbjct: 8 SKTNPSYKRWLKYCEHP--EKNRDIYLLEGLRLCRDAVEAGEKWRIREVCFNDAALRHET 65 Query: 84 DANLPH------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137 V + + QG+ + +P N + +++ Sbjct: 66 GHAFYQLCVNRFGASTVNVFADNLFAKLADTVSSQGIMMAVSPEGERP---TANWRRVLL 122 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L+ V DP N+G+I RSA AF D +I + + +SA G++ H+P + S+ Sbjct: 123 LERVQDPGNLGSIWRSADAFGFDAVILAAGGASPNNRKTLRSAMGSVFHVPVLPFSDTEA 182 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLH 255 A + F + D + E ++D KIAL +G EG GL ++ A + ++ Sbjct: 183 AYTFLKQENFWIAAATLDGRPLAEIARRHDLPKIALAIGNEGNGLSSYARKEADATVYIP 242 Query: 256 MPGIIKALNVSNAAAVALYITQ 277 + G ++LN + AA + Y + Sbjct: 243 ISGKAESLNAACAAGILCYEFR 264 >gi|300858020|ref|YP_003783003.1| hypothetical protein cpfrc_00602 [Corynebacterium pseudotuberculosis FRC41] gi|300685474|gb|ADK28396.1| hypothetical protein cpfrc_00602 [Corynebacterium pseudotuberculosis FRC41] gi|302205744|gb|ADL10086.1| Putative methyltransferase [Corynebacterium pseudotuberculosis C231] gi|302330299|gb|ADL20493.1| Putative methyltransferase [Corynebacterium pseudotuberculosis 1002] gi|308275979|gb|ADO25878.1| Putative methyltransferase [Corynebacterium pseudotuberculosis I19] Length = 290 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 95/283 (33%), Gaps = 19/283 (6%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I + D+ +L D++ + + + + G V L + + L Sbjct: 12 IVHIADAEDTRLD----DFRDLNHSDNRPDLPGGKGLVIAEGPLVVGRLLQS-RFPVRCL 66 Query: 72 LATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 + L D + PV ++ +T+ + G + LA +A Sbjct: 67 IGFPAKLESFLSDPAMAELVRDIPVYSLDRETLASVAGFDMHRGLLAAADRVAGLSIEEA 126 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 V ++ + +L+ V D NIG++ R+A D I+ + + + + G + P Sbjct: 127 VSTARTVAILEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRTP 186 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-----------NDKIALILGAEG 237 + Q+ E DK+AL++GAEG Sbjct: 187 FAHFGGKRTTWQRELEGLKAAGFHLVSLTPHPEAVHLADALVDATGQPYDKVALLVGAEG 246 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 GL A + M +LN++ +AA+A Y Sbjct: 247 PGLTEHAMRATDVRARIPMAPGTDSLNLATSAAIAFYERDRSL 289 >gi|114766067|ref|ZP_01445077.1| RNA methyltransferase, TrmH family, group 3 [Pelagibaca bermudensis HTCC2601] gi|114541702|gb|EAU44742.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. HTCC2601] Length = 259 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 87/239 (36%), Positives = 133/239 (55%), Gaps = 9/239 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 ++++ E ++L+G+H V AL NP R+ +L+ T NA A+L + Sbjct: 11 KEQAKKARSAETVWLFGLHAVRDALLNPRREKLRLILTPNAEAKLADAVAEA-GIAPEIH 69 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAIL 151 P+ + ++VHQG ALE PL LD V L++LD V+DPHN+GAIL Sbjct: 70 DPRKFGAPLDPQSVHQGAALEVKPLDWGRLDDVAVRDDDRPARLVLLDRVSDPHNVGAIL 129 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F +I + +S E+ LAK+ASGALE PY+R NL D ++ + + G+ +G Sbjct: 130 RSAEVFGAQAVIGVQHHSAPETGALAKTASGALERQPYLRERNLADTIRTLQTMGYLVLG 189 Query: 212 LSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L +++ +EQ + ++ +AL+LGAEG GLR KT+ T + + G +LNVSN Sbjct: 190 LDGEAEGTIEQALEGLRDRPVALVLGAEGPGLREKTKTTVDKLVRIDFAGGFGSLNVSN 248 >gi|51598770|ref|YP_072958.1| rRNA methylase [Borrelia garinii PBi] gi|51573341|gb|AAU07366.1| rRNA methylase [Borrelia garinii PBi] Length = 246 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 103/239 (43%), Gaps = 13/239 (5%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE------ 108 +++ ++ N ++ K++ + + + +DKI+ + Sbjct: 7 NSIIESIKNNKG-FELYISKKSSKTKEIERLAKTQNIKIIKISINELDKILKSKDHRGFA 65 Query: 109 ------AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 G + +++LD + DP N GAILR+A FS D + Sbjct: 66 LKLKLEKNKNGKTQTKDFENLLETFKKKEHAFILLLDEIEDPQNFGAILRTAEQFSIDLV 125 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 +TT++ S ++ + +++SGA +++ I ++N+ + + + GF + + Sbjct: 126 VTTQKRSAKDNLTVLRTSSGASQYVKKITVTNINNTIYFLKKHGFWIYAGDIKGQDINKI 185 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +I + KIALILG E KG+ +E + + + G I +LNVS + + ++ + Sbjct: 186 KINDKKIALILGNESKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244 >gi|332258703|ref|XP_003278433.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Nomascus leucogenys] Length = 353 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 105/263 (39%), Gaps = 28/263 (10%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-----LARLDWDANLPHPFPVKTVPPQT 100 L+G+ AL R + +LL PV Q Sbjct: 47 SRLELLFGLSPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRRQK 106 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRS 153 +D + + VHQG+ +E +PL QL +VLD + DP N GA+LRS Sbjct: 107 LDTMCRYQ-VHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRS 165 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A D +IT++R S + V++KS++GA+E + +LT LQ G+ G Sbjct: 166 AHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225 Query: 214 SDSK-----------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPG 258 + + + L+LG EG GL + Q + + + +P Sbjct: 226 GCPSAEDPQSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPP 285 Query: 259 IIKALNVSNAAAVALYITQNHFA 281 +++LNVS AA + L+ N Sbjct: 286 GLESLNVSVAAGILLHSICNQRK 308 >gi|240171957|ref|ZP_04750616.1| rRNA methyltransferase [Mycobacterium kansasii ATCC 12478] Length = 275 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 95/254 (37%), Gaps = 6/254 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ S + GV V L + + + + D Sbjct: 21 DFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFTP--RAMLGTDRRLAELRDDLTG 78 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + + + VG LA + V ++ ++VL+ VND N+G Sbjct: 79 STAPYYRASAEVMARAVGFHLNRGVLASASRLPELTVAQVVDGARTVVVLEGVNDHENLG 138 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +I R+A D ++ + + + G +PY R ++ L + GF+ Sbjct: 139 SIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYARAADWPADLLMLQQLGFR 198 Query: 209 TIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + ++ ++ IAL++GAEG GL + + M +LN Sbjct: 199 LLAMTPHGDARELGEAMDAVREQPIALLVGAEGPGLTAAALRISDLRVRIPMSRGTDSLN 258 Query: 265 VSNAAAVALYITQN 278 V+ AAA+A Y Sbjct: 259 VATAAALAFYERAR 272 >gi|226366171|ref|YP_002783954.1| rRNA methyltransferase [Rhodococcus opacus B4] gi|226244661|dbj|BAH55009.1| rRNA methyltransferase [Rhodococcus opacus B4] Length = 282 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 102/263 (38%), Gaps = 9/263 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA--LARLDW 83 + +++ QS+ ++ + GV ++ AL++ I LL + L+ Sbjct: 20 RNARFQQWQSYLTNRAKRTKAGRFLIQGVRPLNLALDHDW-PIESLLHRIDGPPLSDWAR 78 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVN 142 + V + + ++ K L + + +++ L++V D Sbjct: 79 ELLASRSVEQIGVSAELMAELGEKTDTAPELIAVAKTRVPRLKELRLQSAPLVVVFDRPA 138 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 P N+G ++RSA AF D ++ + ++++G+L +P + +S++ + L Sbjct: 139 SPGNLGTLVRSANAFGADAVVVVGHGADPFDPRSVRASTGSLFAMPVVTVSSVDEILAFR 198 Query: 203 HSWGF-----QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 + +G ++ L++G E +G+ + ++ ++ + Sbjct: 199 DARRASGTELHIVGTDETGSVTIDAHDFGGGTVLVIGNETRGMSAAWRNACDTVVNIPIG 258 Query: 258 GIIKALNVSNAAAVALYITQNHF 280 G +L +A AVALY Sbjct: 259 GAASSLGAPSAGAVALYEIARQR 281 >gi|237738319|ref|ZP_04568800.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817] gi|229420199|gb|EEO35246.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817] Length = 255 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 82/241 (34%), Gaps = 8/241 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + + G L+ +L V + Sbjct: 23 YREEEKKFLAEGRK----FLDFTYIPDLIILKENFEDFENITTKLERFDCRKIVVNDKIF 78 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + +E + + + ++VLD + DP N+G I+R+A A Sbjct: 79 KDLTSQENSQGV----ILVYPYCETNIGKINNNIIVLDKIQDPGNLGTIIRAADAAGFKD 134 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II TK + +S+ G++ ++ + + L + ++ Sbjct: 135 IILTKGSVDCYNEKCVRSSMGSIFNMNIVYMEELQLIQFLKEKKYKFLVTALENNSIEYT 194 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++K A+I G+EG G+ + A + + G ++LNV+ A+ + LY + Sbjct: 195 DITLSEKNAIIFGSEGNGVSDNFLKVADETVIIPIYGSAESLNVAMASGIILYKVRELMN 254 Query: 282 K 282 K Sbjct: 255 K 255 >gi|126640406|ref|YP_001083390.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 226 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 9/223 (4%) Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 +F L + + P V+ +++K+ G HQG+ P + Sbjct: 4 LFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGLP-FHQGVVAAVRPHPTLNEK 62 Query: 128 A------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 LL+ LD V DPHN+GA +R+A A +I + S S + K A+ Sbjct: 63 DLDQLLAETPDALLLALDQVTDPHNLGACIRTAAAMGVQAVIVPRDRSASLTPTARKVAA 122 Query: 182 GALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 G E + +I+++NL K + + ++ P+++ + + +++GAE G Sbjct: 123 GGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDENALPIQKCDFSGAVVIVMGAEDTG 182 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 LRP TQ A++ M G +++LNVS A +ALY ++ Sbjct: 183 LRPITQAQCDQKAYIPMSGNLQSLNVSVATGMALYEACRQRSE 225 >gi|23335906|ref|ZP_00121137.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A] gi|189440335|ref|YP_001955416.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|227547049|ref|ZP_03977098.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622892|ref|ZP_04665923.1| tRNA/rRNA methyltransferase protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296455116|ref|YP_003662260.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JDM301] gi|312133669|ref|YP_004001008.1| spou4 [Bifidobacterium longum subsp. longum BBMN68] gi|317482327|ref|ZP_07941347.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA] gi|322690129|ref|YP_004209863.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F] gi|322692082|ref|YP_004221652.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|189428770|gb|ACD98918.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|227212466|gb|EEI80355.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514889|gb|EEQ54756.1| tRNA/rRNA methyltransferase protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517770|emb|CBK71386.1| rRNA methylase, putative, group 3 [Bifidobacterium longum subsp. longum F8] gi|296184548|gb|ADH01430.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum subsp. longum JDM301] gi|311772933|gb|ADQ02421.1| SpoU4 [Bifidobacterium longum subsp. longum BBMN68] gi|316916207|gb|EFV37609.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA] gi|320456938|dbj|BAJ67560.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|320461465|dbj|BAJ72085.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F] Length = 330 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 72/304 (23%), Positives = 130/304 (42%), Gaps = 28/304 (9%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 + K ++++ R ++ + + + S + +YG ++V AL Sbjct: 25 TPKAEDRVYHKAYKAKKAAERRQMADPRLAARRRVDKFASADTSDLVYGRNSVLEALRVG 84 Query: 65 SRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + R + + +D+I + HQG+ L+ P Sbjct: 85 -VPSSTLYIMSRIEHDDRTREIVKIAGMNGLHMLEADRLEMDRIA-RSGNHQGVILKVDP 142 Query: 121 LLSPTLD---------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +L+ + L + LD V DP N+GA++RSA AF Sbjct: 143 FQYSSLNELADRAEKKAKAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGA 202 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +G+I +R S S +A K ++GA H+P R+ NLT AL+ + G+ +GL K Sbjct: 203 NGVILPERRSASVNAAAWKVSAGAAAHMPVARVVNLTKALEGLKERGYYVVGLDGGGDKL 262 Query: 220 LEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + +D + ++LG+EG GL +ET ++A + + +++LN S AA ++LY N Sbjct: 263 VGETGFESDPLVVVLGSEGSGLGRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSN 322 Query: 279 HFAK 282 K Sbjct: 323 ARRK 326 >gi|289428651|ref|ZP_06430334.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] gi|289158049|gb|EFD06269.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] gi|313807984|gb|EFS46465.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL087PA2] gi|313819552|gb|EFS57266.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL046PA2] gi|313822125|gb|EFS59839.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL036PA1] gi|313823641|gb|EFS61355.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL036PA2] gi|313825966|gb|EFS63680.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL063PA1] gi|314924709|gb|EFS88540.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL036PA3] gi|314962120|gb|EFT06221.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL002PA2] gi|314978998|gb|EFT23092.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL072PA2] gi|314986555|gb|EFT30647.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL005PA2] gi|314990914|gb|EFT35005.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL005PA3] gi|315087106|gb|EFT59082.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL002PA3] gi|315089280|gb|EFT61256.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL072PA1] gi|327329699|gb|EGE71455.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL096PA3] gi|327446385|gb|EGE93039.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL013PA2] gi|328752374|gb|EGF65990.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL020PA1] gi|332675955|gb|AEE72771.1| rRNA methylase family protein [Propionibacterium acnes 266] Length = 269 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 9/243 (3%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY ++ N + ++ G + A LLA + D L Sbjct: 16 ADYVNLRDVNLRKSLEAEHGLFIAEGAKVIRRACEAGYPPRSFLLAPRWIDGLRDLFDGL 75 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V V +T+ + V VH+G + + ++ L+V + + D N+ Sbjct: 76 --DVEVFVVS-ETLAEQVTGFHVHRGALASMCRQTRWSAADLMAARRLVVCEDIVDHTNV 132 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQK 201 GAI+R A DG++ R + K++ G + +P+ R+ + Sbjct: 133 GAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGELRDHGF 192 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + + + + K+AL++G EG GL A + + M G + Sbjct: 193 TVAAMELSGDSVTLDEFSADLRQNPRKVALLMGTEGAGLSAHWISQADVVVRIPMAGGVD 252 Query: 262 ALN 264 +LN Sbjct: 253 SLN 255 >gi|260654702|ref|ZP_05860192.1| RNA methyltransferase, TrmH family, group 3 [Jonquetella anthropi E3_33 E1] gi|260630718|gb|EEX48912.1| RNA methyltransferase, TrmH family, group 3 [Jonquetella anthropi E3_33 E1] Length = 278 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 63/245 (25%), Positives = 112/245 (45%), Gaps = 8/245 (3%) Query: 43 TSQP-ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQT 100 + L +G + L + ++ + A + L ++ V Sbjct: 29 RDESDGLLLCWGRNPSLEQLERSGESVERVWLARGVEAEFEAQVVRLAGRTALERVDRLA 88 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAV 155 +D++ G AVHQG+AL +LD L+++LD DPHN+G+++R+A Sbjct: 89 LDQMTG-GAVHQGIALSLRRPDEVSLDDLLDQLAGGPALVILLDRCQDPHNLGSVIRTAE 147 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A ++ K S + + K+++GA P I + N+ AL + GF +GL+ + Sbjct: 148 AAGASAVLVPKDRSVRLTGTVVKASAGAALRFPVISVVNVKRALDDLKEAGFWVVGLAGE 207 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 S +PL + + + L +GAEG GL T+++ +A + M G ++LN AAA+ Y Sbjct: 208 SSEPLGKLAWDQRTVLAVGAEGTGLAELTRKSCDFLARIPMSGQAESLNAGVAAALGAYE 267 Query: 276 TQNHF 280 F Sbjct: 268 WARRF 272 >gi|212693396|ref|ZP_03301524.1| hypothetical protein BACDOR_02912 [Bacteroides dorei DSM 17855] gi|212664040|gb|EEB24614.1| hypothetical protein BACDOR_02912 [Bacteroides dorei DSM 17855] Length = 251 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 96/259 (37%), Gaps = 22/259 (8%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K + + + G V L L+AT N + Sbjct: 6 KIKYIRSLELKKK-RKEEQVFVAEGHKLVGDLL--GYFPCKLLIATSNW-------LKIN 55 Query: 89 HPF---PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 HP + V + + + ++ + LA+ P + +++S L + LD V DP Sbjct: 56 HPVTANEIIEVTQEELSRASLQKTPQEVLAVFVQPSYDLNPEVIKSS-LCLALDDVQDPG 114 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R A F + I + + ++ GAL + S Q + S Sbjct: 115 NLGTIIRLADWFGIEHIFCSAGTVDVYNPKTVQATMGALARVKVHYCSLP----QLIESL 170 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IK 261 + + S + E + +++G EGKG+ P+ ++ ++ + Sbjct: 171 ADIPVYGTFLSGNIIYAESLSAHGLIVMGNEGKGVSPEVEKLINKKLYIPNYPQERETSE 230 Query: 262 ALNVSNAAAVALYITQNHF 280 +LNV+ A AV + Sbjct: 231 SLNVAIATAVVCSEFRRRL 249 >gi|225351596|ref|ZP_03742619.1| hypothetical protein BIFPSEUDO_03193 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157940|gb|EEG71223.1| hypothetical protein BIFPSEUDO_03193 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 333 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 73/286 (25%), Positives = 128/286 (44%), Gaps = 40/286 (13%) Query: 27 HRDYKKMQSFNQKS-------------RHTSQPENLFLYGVHTVSAALNNP---SRKIFQ 70 H+ YK+ Q+ N++ + +S+ ++L + G + V AL S Sbjct: 34 HKAYKEKQATNRRKMADPRLAARRRAAKFSSESDDLVI-GRNAVLEALRCGVPASTLYVA 92 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL---- 126 + R H + +D+I + + HQG+ ++ P +L Sbjct: 93 ARIEHDDRTREIIRLAGIHGLNLMEADRLEMDRIA-RSSNHQGVVMKAQPFQYSSLAELV 151 Query: 127 -----------------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 + L + LD V DP N+GA++RSA AF +G+I +R S Sbjct: 152 ERADKKSRAMEAANSASARIAARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRS 211 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDK 228 S +A K ++GA H+P R+ NLT A++ + G+ ++GL + + D Sbjct: 212 ASVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSVGLDGGGDALVGETGFETDP 271 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++LG+EG GL +ET S+A + M ++++LN S AA + LY Sbjct: 272 LVVVLGSEGNGLSRLVRETCDSIAGIPMSNMVESLNASVAAGITLY 317 >gi|212716506|ref|ZP_03324634.1| hypothetical protein BIFCAT_01432 [Bifidobacterium catenulatum DSM 16992] gi|212660587|gb|EEB21162.1| hypothetical protein BIFCAT_01432 [Bifidobacterium catenulatum DSM 16992] Length = 333 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 73/286 (25%), Positives = 128/286 (44%), Gaps = 40/286 (13%) Query: 27 HRDYKKMQSFNQKS-------------RHTSQPENLFLYGVHTVSAALNNP---SRKIFQ 70 H+ YK+ Q+ N++ + +S+ ++L + G + V AL S Sbjct: 34 HKAYKEKQATNRRKMADPRLAARRRAAKFSSESDDLVI-GRNAVLEALRCGVPASTLYVA 92 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL---- 126 + R H + +D+I + + HQG+ ++ P +L Sbjct: 93 ARIEHDDRTREIIRLAGIHGLNLMEADRLEMDRIA-RSSNHQGVVMKAQPFQYSSLAELV 151 Query: 127 -----------------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 + L + LD V DP N+GA++RSA AF +G+I +R S Sbjct: 152 ERADKKSRAMEAANSTSARIAARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRS 211 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDK 228 S +A K ++GA H+P R+ NLT A++ + G+ ++GL + + D Sbjct: 212 ASVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSVGLDGGGDALVGETGFETDP 271 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++LG+EG GL +ET S+A + M ++++LN S AA + LY Sbjct: 272 LVVVLGSEGNGLSRLVRETCDSIAGIPMSNMVESLNASVAAGITLY 317 >gi|259507138|ref|ZP_05750038.1| SpoU rRNA methylase family protein [Corynebacterium efficiens YS-314] gi|259165275|gb|EEW49829.1| SpoU rRNA methylase family protein [Corynebacterium efficiens YS-314] Length = 278 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 92/259 (35%), Gaps = 9/259 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + + + + G V+ L + L+ + L + + Sbjct: 19 DFRDLNRSDFRPDLPGGRGLVIAEGP-LVTGRLLESRFPVRALVGFRGKLDAFLAEHEV- 76 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV V + + ++ G + LA + ++ ++VL+ V D NIG Sbjct: 77 GDIPVYEVTREVLAEVAGFDMHRGLLAAADRVEEPTVASVLDGARTVVVLEGVGDHENIG 136 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++ R+A D I+ + + + + G + +PY ++ Q+ + Sbjct: 137 SMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPYAHLAGTYTTWQRSLTELAD 196 Query: 209 TIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 E D K+AL++GAEG GL A + M + Sbjct: 197 AGFHLVSLTPDPEAVHLEDALAGREKVALLVGAEGPGLTEHAMRATDVRARIPMAPGTDS 256 Query: 263 LNVSNAAAVALYITQN-HF 280 LN++ +AA+A Y Sbjct: 257 LNLATSAAIAFYERDRSQR 275 >gi|253689696|ref|YP_003018886.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756274|gb|ACT14350.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 382 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 87/244 (35%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A N S I + + R + V + Sbjct: 138 RRQRQEETRVYGENACQALFKNRSEVIVRAWFLQEVTPRFRDALRWMAANRKAYHVVEEE 197 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ L ++ L+ V +PHN+G I+RS Sbjct: 198 ELIKASGTE-HHGGVCFLIKKRQGLDVREYLKTADEHDCVLALEDVGNPHNLGGIMRSCA 256 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F GI+ + + ES ++A G EH+ I + L + G+ + SS Sbjct: 257 HFGVKGILV-QDAALLESGAAVRTAEGGAEHVKAINADDFLSVLAEFRRAGYTIVTTSSH 315 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L Q K ++LG EG GL + + G +++LN+S A + L Sbjct: 316 KGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSE 375 Query: 276 TQNH 279 Sbjct: 376 WWRQ 379 >gi|25027456|ref|NP_737510.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314] gi|23492738|dbj|BAC17710.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314] Length = 301 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 92/259 (35%), Gaps = 9/259 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + + + + G V+ L + L+ + L + + Sbjct: 42 DFRDLNRSDFRPDLPGGRGLVIAEGP-LVTGRLLESRFPVRALVGFRGKLDAFLAEHEV- 99 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV V + + ++ G + LA + ++ ++VL+ V D NIG Sbjct: 100 GDIPVYEVTREVLAEVAGFDMHRGLLAAADRVEEPTVASVLDGARTVVVLEGVGDHENIG 159 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++ R+A D I+ + + + + G + +PY ++ Q+ + Sbjct: 160 SMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPYAHLAGTYTTWQRSLTELAD 219 Query: 209 TIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 E D K+AL++GAEG GL A + M + Sbjct: 220 AGFHLVSLTPDPEAVHLEDALAGREKVALLVGAEGPGLTEHAMRATDVRARIPMAPGTDS 279 Query: 263 LNVSNAAAVALYITQN-HF 280 LN++ +AA+A Y Sbjct: 280 LNLATSAAIAFYERDRSQR 298 >gi|257451967|ref|ZP_05617266.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|317058516|ref|ZP_07923001.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|313684192|gb|EFS21027.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] Length = 257 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 87/236 (36%), Gaps = 11/236 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + + G L + L ++ P+ ++ + Sbjct: 26 YREEAKLFLAEGRK----FLEYSENASYVLFRED---IPIEETILEKFNCPIISLSSKCF 78 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +K+ V + + R+++ L++LD + DP N+G I+R A Sbjct: 79 EKVS----VQENSQGVIILYSYKNIVLSRDARQLIILDDIQDPGNLGTIIRLVDASGFSD 134 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II TK + + +S+ G++ H+ + + + + P Sbjct: 135 IILTKNSVDYYNEKVVRSSMGSIFHVNLHTMEKIEIVDYLKKQQYNIVVTSLQEDSIPYM 194 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +++ A + G EG G+ + E A + + G ++LNV+ A + L+ ++ Sbjct: 195 EMSLDERNAFVFGNEGHGVSKEFLEIADEKVIIPISGQAESLNVAMALGILLFYSR 250 >gi|257069324|ref|YP_003155579.1| rRNA methylase [Brachybacterium faecium DSM 4810] gi|256560142|gb|ACU85989.1| rRNA methylase [Brachybacterium faecium DSM 4810] Length = 295 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 58/276 (21%), Positives = 104/276 (37%), Gaps = 25/276 (9%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 +K+ + +S + + G V + L++ ++ AT+ L Sbjct: 17 RVRKVAALAGRS-ARRKQGRFRIEGPQAVRSLLSHRPDLAREVFATERTAGDHPELITLA 75 Query: 89 HPFPV--KTVPPQTIDKIV--------------GKEAVHQGL--------ALETAPLLSP 124 V + V Q + +V G QG+ A A + Sbjct: 76 RDAAVALRIVDEQIVRALVREPAGEGADDGTAAGTLVSPQGVVAVGTLPEADAAAATGAL 135 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + ++VL V DP N+G ++R+A A D ++ T+ + S ++A+G+L Sbjct: 136 RALPGEDPATVVVLHEVRDPGNVGTLIRTADAAGADLVLLTRTSADPYSPKAVRAATGSL 195 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 H+P + + + D L + + G S + L +IA I G E GL T Sbjct: 196 FHLPVLTGAEIGDVLAALAAGGLTAAATSGHASSELFDVELPPRIAWIFGNEAHGLDRAT 255 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + + G ++LNV AA V L+ T Sbjct: 256 LDAAPLRVRIPLAGRAESLNVHTAATVCLFETLRRR 291 >gi|269120819|ref|YP_003308996.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC 33386] gi|268614697|gb|ACZ09065.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC 33386] Length = 256 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 42/254 (16%), Positives = 87/254 (34%), Gaps = 10/254 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ YK ++ ++K ++ + G + +++ ++ L+ Sbjct: 7 SPDNKFYKILRKLDKK-KYRDKNNIFKAEGEKFLKE-----KINFTKIIIKESKYEYLEN 60 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + + D+I +E +++LD V D Sbjct: 61 KYKITQFNNLTILKDDLFDEISEQENSQGV----IVLYSKLLTSIEEIDGDVVILDDVQD 116 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P NIG I+R+ A +I TK + ++ G + I + Sbjct: 117 PGNIGTIIRTMEASGFKNLILTKGSVDVYNPKTVRATMGGIFKSNIIYETPERITEFLKD 176 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + L + +K A I G EG G+ E+ A + + G + +L Sbjct: 177 NNYQVISTLLDKNSIDYRDVELKEKNAYIFGNEGHGISDIFIESTDIKAIIPIYGDVDSL 236 Query: 264 NVSNAAAVALYITQ 277 NVS A+ + LY + Sbjct: 237 NVSVASGIFLYKMR 250 >gi|258645251|ref|ZP_05732720.1| RNA methyltransferase, TrmH family [Dialister invisus DSM 15470] gi|260402601|gb|EEW96148.1| RNA methyltransferase, TrmH family [Dialister invisus DSM 15470] Length = 269 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 99/279 (35%), Gaps = 25/279 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ K N+R + QK ++ + + + G+ Sbjct: 1 MEHITSK------------------NNRWIRLAIRLKQK-KYRDKNKMFLMEGLRNAED- 40 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP---PQTIDKIVGKEAVHQGLALE 117 + N L + + + + +++ QG+ L Sbjct: 41 VQNQEISDIVCLVQSERAENGSVQHIFERGENLHWLFCEVEEPLMRLISGTENGQGIILL 100 Query: 118 TAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 ++LD V DP N+GAI+R+A A C G++ TK + S Sbjct: 101 VKQPYVMDYPQLLNGLHGKYVLLDTVQDPGNVGAIIRTAAAAGCSGVLLTKGSADPYSEK 160 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + +S+ G++ +P ++ + IG S + + + I G Sbjct: 161 VVRSSMGSILRLPIYHDLDIEFLKEIKSFSKVPFIGTSLSASQNYRHAKFVTEGVFIFGN 220 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 EG G+ P+ + + M G +++LNVS+ AA+ L+ Sbjct: 221 EGSGISPEILDLTDWNVFIPMAGTVESLNVSSTAAIILF 259 >gi|228898845|ref|ZP_04063127.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222] gi|228905889|ref|ZP_04069786.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200] gi|228963192|ref|ZP_04124361.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228796450|gb|EEM43889.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228853704|gb|EEM98464.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200] gi|228860745|gb|EEN05123.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222] Length = 212 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 9/209 (4%) Query: 79 ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRN 131 ++ + ++ P + +D++V E HQG+ + A L+ Sbjct: 1 MQIVLALAKENKVILQHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNE 58 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++LD + DPHN+G+I+R+A A GII KR + +A +AK+++GA+E+IP R Sbjct: 59 DPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVAR 118 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++NL+ + ++ G G + K I L++G+EGKG+ E + Sbjct: 119 VTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFL 178 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M G + +LN S AA++ +Y Sbjct: 179 ITLPMVGKVTSLNASVAASLLMYEVYRKR 207 >gi|228474088|ref|ZP_04058829.1| tRNA/rRNA methyltransferase [Capnocytophaga gingivalis ATCC 33624] gi|228274602|gb|EEK13443.1| tRNA/rRNA methyltransferase [Capnocytophaga gingivalis ATCC 33624] Length = 250 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 95/250 (38%), Gaps = 21/250 (8%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +Q +QK +H S+ + G ++ + K + AT A L Sbjct: 8 KLVQKLSQK-KHRSETGLFVVEGKKSIVEFVEAGY-KAEVIYATDTFSASLGQQ------ 59 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 P+ V + + K+ + +G+A+ P L L++ LD++ DP N+G + Sbjct: 60 -PLTLVSKEELSKLSTLKHPDEGVAIFRQPKRKGIL----QEGLILALDNIQDPGNLGTL 114 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R F + ++ +++ + + +++ G+L + + + T+ Sbjct: 115 IRLCDWFGIETLLCSEQTVDCYNPKVVQASMGSLSRVEVHYLPLAGFLVTCDLPVYVATL 174 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSN 267 + ++LG E G+ P+ A + G ++LNV+ Sbjct: 175 AGEDLYT-----TTFPEDCVIVLGNEANGVSPEVAALANGAITIPRFGKRQQAESLNVAM 229 Query: 268 AAAVALYITQ 277 A A+ + + Sbjct: 230 AGAIIVSQIK 239 >gi|119505868|ref|ZP_01627933.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium HTCC2080] gi|119458296|gb|EAW39406.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium HTCC2080] Length = 255 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 58/247 (23%), Positives = 113/247 (45%), Gaps = 9/247 (3%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFP 92 + +S ++ + L +YG + V AL++P+ +L K+ + A+ Sbjct: 2 SDRSSLENRHQILTIYGRNAVFEALSDPTIACLRLHWATSNQKSPATKRILQASEARGID 61 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNI 147 V+ +T+ +I QG+AL+ + D +++S ++ LD + +P N+ Sbjct: 62 VREHTRKTLSRISRNGKQDQGVALDITCEKFSSFDELKDSLSTSSLRILALDGITNPQNV 121 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+RSAVA D I+ K+ + ++ K+++G + P I +L AL+++ G Sbjct: 122 GMIIRSAVAGGIDAILYPKKGVATLGPLVIKASAGIVFKAPIIPCDSLAPALEQLQIGGA 181 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L +S L + +LG E G+ + A H+ M +++LNV+ Sbjct: 182 AIATLEGNSATSLFTYRPAKSVVYVLGGESDGVSSQVSNLADIKLHIPMGSGVESLNVAV 241 Query: 268 AAAVALY 274 AA++ Y Sbjct: 242 AASLVAY 248 >gi|313671984|ref|YP_004050095.1| RNA methyltransferase, trmh family, group 3 [Calditerrivibrio nitroreducens DSM 19672] gi|312938740|gb|ADR17932.1| RNA methyltransferase, TrmH family, group 3 [Calditerrivibrio nitroreducens DSM 19672] Length = 230 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 99/226 (43%), Gaps = 7/226 (3%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 YG + ALN+ KI + K+ + D + + + + GK+A Sbjct: 7 YGKNPFFEALNSN--KIIKAYIRKDDRIK---DLLIRKKILFEELTADKHKEKFGKDAQG 61 Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 E L + + +LDH+ DPHN GAI+R+ F I K Sbjct: 62 YAFEFEVEYCDLDELGQNSGN--ICILDHIQDPHNFGAIVRAGHCFGVRNFIIAKDNQSP 119 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + V+ KS++GA + + + N+ +++++ G+ + + L N+ + Sbjct: 120 VTPVVVKSSAGAAIYSRFYEVVNINRSIEELKEKGYWIYAADMNGETKLGDIRPNEPYVV 179 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 I+G+EG+G+R + A + + M G+I +LN S +AA+A Y Sbjct: 180 IIGSEGEGIRKNVLKKADVVFRIPMRGVIDSLNASQSAAIAFYHFY 225 >gi|314968474|gb|EFT12572.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL037PA1] Length = 269 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 9/243 (3%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY ++ N + ++ G + A LLA + D L Sbjct: 16 ADYVNLRDVNLRKSLEAEHGLFIAEGAKVIRRACEAGYPPRSFLLAPRWIDGLRDLFDGL 75 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V V +T+ + V VH+G + + ++ L+V + + D N+ Sbjct: 76 --DVEVFVVS-ETLAEQVTGFHVHRGALASMCRQTRWSAADLMAARRLVVCEDIVDHTNV 132 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQK 201 GAI+R A DG++ R + K++ G + +P+ R+ + Sbjct: 133 GAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGELRDHGF 192 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + + + + K+AL++G EG GL A + + M G + Sbjct: 193 TVAAMALSGDSVTLDEFSADLRQNPRKVALLMGTEGAGLSAHWISQADVVVRIPMAGGVD 252 Query: 262 ALN 264 +LN Sbjct: 253 SLN 255 >gi|50843004|ref|YP_056231.1| rRNA methylase family protein [Propionibacterium acnes KPA171202] gi|289426359|ref|ZP_06428102.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187] gi|295131075|ref|YP_003581738.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137] gi|50840606|gb|AAT83273.1| rRNA methylase family protein [Propionibacterium acnes KPA171202] gi|289153087|gb|EFD01805.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187] gi|291376146|gb|ADE00001.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137] gi|313763557|gb|EFS34921.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL013PA1] gi|313793949|gb|EFS41973.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL110PA1] gi|313801336|gb|EFS42587.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL110PA2] gi|313811547|gb|EFS49261.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL083PA1] gi|313813395|gb|EFS51109.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL025PA1] gi|313816737|gb|EFS54451.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL059PA1] gi|313829433|gb|EFS67147.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL063PA2] gi|313839942|gb|EFS77656.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL086PA1] gi|314914711|gb|EFS78542.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL005PA4] gi|314919328|gb|EFS83159.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL050PA1] gi|314920763|gb|EFS84594.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL050PA3] gi|314930642|gb|EFS94473.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL067PA1] gi|314954402|gb|EFS98808.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL027PA1] gi|314957514|gb|EFT01617.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL002PA1] gi|314963698|gb|EFT07798.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL082PA1] gi|315079548|gb|EFT51541.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL053PA2] gi|315081223|gb|EFT53199.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL078PA1] gi|315099183|gb|EFT71159.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL059PA2] gi|315100333|gb|EFT72309.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL046PA1] gi|315106854|gb|EFT78830.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL030PA1] gi|315108983|gb|EFT80959.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL030PA2] gi|327334215|gb|EGE75929.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL097PA1] gi|327452027|gb|EGE98681.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL092PA1] gi|327454935|gb|EGF01590.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL087PA3] gi|327457778|gb|EGF04433.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL083PA2] gi|328755231|gb|EGF68847.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL087PA1] gi|328758289|gb|EGF71905.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL025PA2] Length = 269 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 9/243 (3%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY ++ N + ++ G + A LLA + D L Sbjct: 16 ADYVNLRDVNLRKSLEAEHGLFIAEGAKVIRRACEAGYPPRSFLLAPRWIDGLRDLFDGL 75 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V V +T+ + V VH+G + + ++ L+V + + D N+ Sbjct: 76 --DVEVFVVS-ETLAEQVTGFHVHRGALASMCRQTRWSAADLMAARRLVVCEDIVDHTNV 132 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQK 201 GAI+R A DG++ R + K++ G + +P+ R+ + Sbjct: 133 GAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGELRDHGF 192 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + + + + K+AL++G EG GL A + + M G + Sbjct: 193 TVAAMALSGDSVTLDEFSADLRQNPRKVALLMGTEGAGLSAHWISQADVVVRIPMAGGVD 252 Query: 262 ALN 264 +LN Sbjct: 253 SLN 255 >gi|257057053|ref|YP_003134885.1| rRNA methylase [Saccharomonospora viridis DSM 43017] gi|256586925|gb|ACU98058.1| rRNA methylase [Saccharomonospora viridis DSM 43017] Length = 256 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 98/256 (38%), Gaps = 16/256 (6%) Query: 35 SFNQKSRHTSQPENLF-LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHP 90 + +YG V AL +P+ + +++ + A Sbjct: 4 KQATSPKDR-----FLTVYGRKPVLEALRDPALDVDKVIMADTVRGPAIAEIQRAAEARG 58 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHN 146 PV+ + + G QG+ + L + L+VLD + N Sbjct: 59 VPVRRASAHRVKVLAGNGKQDQGVLADVVAPRMRPLAAALEGRTPPSPLLVLDGITTSAN 118 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G ILR+A A G++ +R + ++ K+++G P +R + +A++ + G Sbjct: 119 VGMILRTATAAGIPGVVVPRRGVAALDPLVVKASAGVAFRAPVLRCATAVEAVESLVEVG 178 Query: 207 FQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + L + + D ++A +LG E +G+ + + MPG +++L Sbjct: 179 YTVYALGARADAESTSLFDTDVPSRVAFVLGGETEGVSAAVADLVAGWVSIPMPGDVESL 238 Query: 264 NVSNAAAVALYITQNH 279 NVS AAAV + Sbjct: 239 NVSAAAAVVCFDLVRR 254 >gi|46200169|ref|YP_005836.1| tRNA (guanosine-2'-O-)-methyltransferase [Thermus thermophilus HB27] gi|55980096|ref|YP_143393.1| tRNA (guanosine-2'-O-) methyltransferase [Thermus thermophilus HB8] gi|48425869|pdb|1V2X|A Chain A, Trmh gi|11079208|dbj|BAB17605.1| tRNA (Gm18) methyltransferase [Thermus thermophilus] gi|46197797|gb|AAS82209.1| tRNA (Guanosine-2'-O-)-methyltransferase [Thermus thermophilus HB27] gi|55771509|dbj|BAD69950.1| tRNA (guanosine-2'-O-) methyltransferase [Thermus thermophilus HB8] Length = 194 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 1/153 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L ++L++V+ PHN+ AILR+ A + S ++ Sbjct: 19 RQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPTFNETSGGSHKWVYLRV 78 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + K + L D + + A++ GAE G+ + A Sbjct: 79 HPDLHEAFRFLKERGFTVYATALRED-ARDFREVDYTKPTAVLFGAEKWGVSEEALALAD 137 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G++++LNVS AAAV L+ Q K Sbjct: 138 GAIKIPMLGMVQSLNVSVAAAVILFEAQRQRLK 170 >gi|294634934|ref|ZP_06713452.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda ATCC 23685] gi|291091643|gb|EFE24204.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda ATCC 23685] Length = 267 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 78/246 (31%), Gaps = 9/246 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 20 RRQRAEETRVYGENACQALFASRPEAIVRAWFLQSVTPRFRDALRWMAANRKAYHVVDDA 79 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 + K G + H G+ S + ++ L++V +PHN+G I+R+ Sbjct: 80 ELTKASGTD-HHGGVCFLIKKRRSLDAQQYLASQAEQAVDCVLALENVANPHNLGGIMRT 138 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 F GI+ + + A + + GA + S Sbjct: 139 CAHFGIRGIMAPESAALESGAAVRTAEGGAEHVQAIDAEDFAATLDTFRRAGYTIVTTSS 198 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L + KI L++G EG GL T + G +++LNVS A + L Sbjct: 199 HKGTTQLHRATLPAKIVLVVGHEGDGLSDGTLRQGDLSISIGGTGSVESLNVSVATGIML 258 Query: 274 YITQNH 279 Sbjct: 259 AEWWRQ 264 >gi|302866851|ref|YP_003835488.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029] gi|302569710|gb|ADL45912.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC 27029] Length = 294 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 89/239 (37%), Gaps = 7/239 (2%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDK 103 G V AL + +L T AL R A PV V + Sbjct: 39 AGRFLAEGPQAVREALARTGTVV-ELFGTPAALDRYADLAAAAARADVPVSEVTDDALAA 97 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + A +A+ + R +L+ VL + DP N G +LR+A A +I Sbjct: 98 LTETVAPQGLVAVCRHLDVPLEQAVARGPRLVAVLAGIRDPGNAGTVLRTADAAGAGAVI 157 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH----SWGFQTIGLSSDSKKP 219 + ++++G+L H+ +R ++ A++ + T SD Sbjct: 158 FAGEAVDPYNGKCVRASAGSLFHVDVVRAADPLAAVEALRAAGLEILATTGYGDSDLDDL 217 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + A + G+E GL + A + + + G ++LN++ AAAV LY + Sbjct: 218 ADAGRLAAPTAWLFGSEAHGLPDELTAAADARVRVPLHGRAESLNLAAAAAVCLYSSAR 276 >gi|311740920|ref|ZP_07714747.1| SpoU rRNA methylase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304440|gb|EFQ80516.1| SpoU rRNA methylase [Corynebacterium pseudogenitalium ATCC 33035] Length = 268 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 48/263 (18%), Positives = 93/263 (35%), Gaps = 10/263 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 +++ N+ + S + G V + L + L+ + + Sbjct: 6 PADPRLHDIRNLNKSDK--SGEGLVIAEGP-LVVSRLAESRFPMRCLVGFPKKVEAYISE 62 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 P P+ V +T+ ++ G + +A + V +++ + VL+ V D Sbjct: 63 YGEPE-CPIYEVSRETLAEVAGFDMHRGLVAAADRAPEPEVSEIVDSAKTIAVLEGVGDH 121 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIGAI R A D ++ + + + G + +P+ + Q+ Sbjct: 122 ENIGAIFRHAAGMGVDAVLLGSGAADPLYRRSVRVSMGHVLRLPFAHLEGGFTTWQRSLQ 181 Query: 205 WGFQTIGLSSDSKKPLEQEIKN------DKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 E DK+A+++GAEG GL + A + M Sbjct: 182 ALADASFTLISLTPNPEAVHLAEAMHGLDKVAMLVGAEGPGLTEHAMKATDIRARIPMAP 241 Query: 259 IIKALNVSNAAAVALYITQNHFA 281 +LNV+ AAA++ Y Q + Sbjct: 242 GTDSLNVATAAAISFYERQRSLS 264 >gi|320535491|ref|ZP_08035597.1| RNA methyltransferase, TrmH family, group 3 [Treponema phagedenis F0421] gi|320147683|gb|EFW39193.1| RNA methyltransferase, TrmH family, group 3 [Treponema phagedenis F0421] Length = 255 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 98/252 (38%), Gaps = 22/252 (8%) Query: 50 FLYGVHTVSAALNNPSRK----IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + G H++ L + + I A + +D + Sbjct: 3 IISGFHSIEERLRASTAEERSGITLYYAKSGPRVKKIIAQAGQLGVQCIQSTDAQLDSMA 62 Query: 106 G-----------------KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 K+ +G + + S L+++ D + DPHNIG Sbjct: 63 SSLPESLRAHRGVLLTAEKKESAKGSVSSISIEEIFAAVRKKESALILMADSITDPHNIG 122 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI+RSA F D +I +R+S +S ++AK ++GA +P I + NL ++ GF Sbjct: 123 AIVRSADQFGVDAVIVPQRHSAGDSEIIAKISAGATAWVPLIEVPNLVRTAEQCKKEGFW 182 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G + + + K LILG+EG G+ + S+ + G + +LNVS A Sbjct: 183 VYGADASGEPIG-KLSFPQKTLLILGSEGSGIARLLKNCCDSLIAIPTRGKLDSLNVSVA 241 Query: 269 AAVALYITQNHF 280 A + LY + Sbjct: 242 AGILLYEIRRSL 253 >gi|300933427|ref|ZP_07148683.1| putative rRNA methylase [Corynebacterium resistens DSM 45100] Length = 278 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 96/246 (39%), Gaps = 15/246 (6%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 G + V++ALN+ S + ++ T++A R + P+ + + D + Sbjct: 32 FLAEGENAVTSALNHGS--VIEIFVTESAAQRFSSLLDATSSTPISFISDRAADHLSETV 89 Query: 109 AVHQGLALETAPLLS---PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 AL + L A +N L+ V +P N G ++R + A G++ Sbjct: 90 TSTGLFALCNSQLSDLTAVVESAKKNLPLIAVPVETGEPGNAGTLIRVSDALGAAGVVFA 149 Query: 166 KRYSPSESAVLAKSASGALEHIPY---------IRISNLTDALQKMHSWGFQTIGLSSDS 216 + ++++G++ H+P I + + + + Sbjct: 150 GQSVDPLGGKAVRASAGSIFHLPVAREAGVADVIDRLHEEGFTVMATAMDGDVSLEEAST 209 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +P E+ I A + G E GL Q+ A + M G +++N++ AA++ LY + Sbjct: 210 SEPGEKPILAQPTAWLFGNEAHGLG-HWQDLADLRISIPMRGRAESMNLATAASICLYQS 268 Query: 277 QNHFAK 282 N A+ Sbjct: 269 ANALAR 274 >gi|238896030|ref|YP_002920766.1| putative methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|238548348|dbj|BAH64699.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 361 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 90/244 (36%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 117 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 176 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ ++ ++ L+ V +PHN+GAI+RS Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRHGTSVAQWVAKAGEEDCVLALEDVGNPHNLGAIMRSCA 235 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + ES ++A G EH+ I + D L + G+ + SS Sbjct: 236 HFGVKGVVV-QDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFRKAGYAIVSTSSH 294 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + PL + K+ L LG E GL +A + G +++LNVS A V L Sbjct: 295 NGTPLFKAELPKKMVLALGQERDGLSDAAISSADLSVAIDGTGNVESLNVSVATGVLLAE 354 Query: 276 TQNH 279 Sbjct: 355 WWRQ 358 >gi|152971435|ref|YP_001336544.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956284|gb|ABR78314.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 361 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 90/244 (36%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 117 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 176 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ ++ ++ L+ V +PHN+GAI+RS Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRHGTSVAQWVAKAGEEDCVLALEDVGNPHNLGAIMRSCA 235 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + ES ++A G EH+ I + D L + G+ + SS Sbjct: 236 HFGVKGVVV-QDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFRKAGYAIVSTSSH 294 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + PL + K+ L LG E GL +A + G +++LNVS A V L Sbjct: 295 NGTPLFKAELPKKMVLALGQERDGLSDAAISSADLSVAIDGTGNVESLNVSVATGVLLAE 354 Query: 276 TQNH 279 Sbjct: 355 WWRQ 358 >gi|229009601|ref|ZP_04166827.1| tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048] gi|229053938|ref|ZP_04195372.1| tRNA/rRNA methyltransferase [Bacillus cereus AH603] gi|229131099|ref|ZP_04260011.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196] gi|229165080|ref|ZP_04292875.1| tRNA/rRNA methyltransferase [Bacillus cereus AH621] gi|228618343|gb|EEK75373.1| tRNA/rRNA methyltransferase [Bacillus cereus AH621] gi|228652312|gb|EEL08237.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196] gi|228721356|gb|EEL72877.1| tRNA/rRNA methyltransferase [Bacillus cereus AH603] gi|228751623|gb|EEM01423.1| tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048] Length = 222 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 9/203 (4%) Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMV 137 + ++ P + +D++V E HQG+ + A L+ ++ Sbjct: 17 LAKENKVILQHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKLAEKRNEDPFFLI 74 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD + DPHN+G+I+R+A A G+I KR + +A +AK+++GA+E+IP R++NL+ Sbjct: 75 LDEIEDPHNLGSIMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSR 134 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 + ++ G G + K N I L++G+EGKG+ E + L M Sbjct: 135 TIDELKERGLWIAGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLITLPMV 194 Query: 258 GIIKALNVSNAAAVALYITQNHF 280 G + +LN S AA++ +Y Sbjct: 195 GKVTSLNASVAASLLMYEVYRKR 217 >gi|296123594|ref|YP_003631372.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM 3776] gi|296015934|gb|ADG69173.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM 3776] Length = 285 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 98/258 (37%), Gaps = 32/258 (12%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + GV TV L + L+ + W +P PV +P + +++G Sbjct: 32 FIVEGVRTVERLLASKFETASILVTQEKVA---AWAGLIPPEIPVYIMPTEMASQLIGFH 88 Query: 109 AVHQGLALETAPLLSPTLDA--------------------------VRNSQLLMVLDHVN 142 +H G+ + +L+ LL+V + + Sbjct: 89 -LHVGVMACGLRRRTASLEQLLGLPEPPKDQRLATTTSIEKYHELTAFQKPLLIVCPNCD 147 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRISNLTDALQ 200 +P N+GAI+R A AF G++ K S + + + G + I R + Sbjct: 148 NPENLGAIIRIASAFRATGLLLGKACCDPFSRRVIRVSMGNIFGLTIRESRHLDHDLQRL 207 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 K + S+S L+ + ++AL+LG E +GL + + + + MP + Sbjct: 208 KTEFGFETMGAILSESAVSLKNVQRPHRLALLLGNEAEGLTTEWMDHCNHLVTIPMPPDV 267 Query: 261 KALNVSNAAAVALYITQN 278 +LNV+ AA + LY N Sbjct: 268 DSLNVAVAAGIFLYQLTN 285 >gi|88705071|ref|ZP_01102783.1| SpoU rRNA methylase family protein [Congregibacter litoralis KT71] gi|88700766|gb|EAQ97873.1| SpoU rRNA methylase family protein [Congregibacter litoralis KT71] Length = 257 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 96/246 (39%), Gaps = 11/246 (4%) Query: 43 TSQPENLF-LYGVHTVSAALNNPSRKIFQLLATKNAL----ARLDWDANLPHPFPVKTVP 97 + +YG V AL + L + R A + Sbjct: 9 RQERRRFLTIYGRKAVLEALQDEDMDCRILHMANSNRGGGIIRDIQRAAQERGLDCREHS 68 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILR 152 + + +I QG+AL+ LD Q ++ LD V +P N+G ++R Sbjct: 69 REELARISRNGRQDQGVALDVYCAAMGELDAYLRDMSDAPQRILALDGVTNPQNMGMVIR 128 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A G+I R +P+ ++ K+++G + P +R + D +++ GF L Sbjct: 129 SAAAAGIQGLIYADRGNPALGPLVIKASAGTVFRAPLLRCQTVMDGARQLSDAGFTLYRL 188 Query: 213 SSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 +D ++ + + + +LG E G+ + + M +++LNV+ + A+ Sbjct: 189 QADGRRSLFDGQDFAQRALFVLGGESDGISEALRGLPGENLSIPMRNGVESLNVAVSGAL 248 Query: 272 ALYITQ 277 YI Sbjct: 249 VAYIAA 254 >gi|269123340|ref|YP_003305917.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis DSM 12112] gi|268314666|gb|ACZ01040.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis DSM 12112] Length = 254 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 98/256 (38%), Gaps = 11/256 (4%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 + ++R YK ++ N K ++ + G + N K+ + ++ + Sbjct: 6 VSTDNRYYKLIKKLNDK-KYRDESGVFLAEGEKFLEE--KNNFSKV---IVKESKYMYYE 59 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 N+ + + + D I + L + + L + + + L++LD + Sbjct: 60 EKYNISKYENLTILSDKLFDNISTQNNSQGILFIYSKHLSNLSELSGD----LIILDAIQ 115 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP NIG I+R+ VA + +I TK S + ++ G + ++ I Sbjct: 116 DPGNIGTIIRTLVAANYRTLILTKSSVDVYSPKVVRATMGGIFNVNIIYEEKENIIKFLK 175 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + S + K A I G EG G+ + E + A + + G I+ Sbjct: 176 ENGYNIISTALSKESIDYREVELKKDKNAYIFGNEGGGVSDEFLEISHQKAIIPIYGKIE 235 Query: 262 ALNVSNAAAVALYITQ 277 +LNVS A + LY + Sbjct: 236 SLNVSIALGIFLYKMR 251 >gi|325954299|ref|YP_004237959.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922] gi|323436917|gb|ADX67381.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922] Length = 243 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 90/249 (36%), Gaps = 17/249 (6%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 K+ + ++ + + GV V L + + +L T + + + Sbjct: 8 KIITSLGSKKYRQKYNLFVVEGVKNVKEVLKSNIT-VKELYTT-------NQNFDAKGNL 59 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV + P + KI ++ + P L +VLD +NDP N+G I+ Sbjct: 60 PVHYLSPNELKKISFLSTPNE---CLAVCEIPPQRSIAPVKGLTLVLDTINDPGNLGTII 116 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R A F II +K + + S G+ + ++ I Sbjct: 117 RLADWFGITQIICSKESVDVYNPKVIMSTMGSFARVAVHYTDI-----LEVIENYKYPIL 171 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-IKALNVSNAAA 270 + + + Q + L++G+E G+ ++ T+ + G ++LNV+ A + Sbjct: 172 GAFMEGESIFQFPFPENAMLVMGSEAHGISKAVEDKITNKISIPAIGKQTESLNVAMATS 231 Query: 271 VALYITQNH 279 + + + Sbjct: 232 IIVGEVFSQ 240 >gi|227485251|ref|ZP_03915567.1| possible rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] gi|227236711|gb|EEI86726.1| possible rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] Length = 239 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 36/248 (14%), Positives = 87/248 (35%), Gaps = 19/248 (7%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++++K + K ++ + + + V A+ + + K+ + + Sbjct: 7 SNQNFKFLNKLKMK-KYRDKENSFIIESKKLVDEAIASSA-KVDFIFLKEGVSYETSHKT 64 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + +++ + G+ + + + +++LD NDP Sbjct: 65 LIFC---------ESLFTKISSMTSPDGIGAVIKKKDPVEISSSK----ILLLDGTNDPG 111 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G ++RSA AF +I + + + A + Sbjct: 112 NLGTMIRSAEAFGFKDVILMPGTADVYN----EKTLRASMGSIFRLNILNKTYDDIKKLK 167 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 I + + K+ KI + +G E GL + +E + M G I++LN Sbjct: 168 SCYRILSADMDGLDIRNYKKDSKIIIAIGNEANGLSQEMREITDEFIKIPMEGEIESLNA 227 Query: 266 SNAAAVAL 273 + AA++ + Sbjct: 228 AIAASIIM 235 >gi|225445088|ref|XP_002280407.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 595 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 79/336 (23%), Positives = 127/336 (37%), Gaps = 60/336 (17%) Query: 1 MNLISKKKSEKIFSL-KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP--ENLF------- 50 M +I + +KI + ++ K R + ++ R T + E+ Sbjct: 240 MEVIDDPRWDKIKNRYTETGDVKGRYERPELRRWNKQENWGRKTWKEATESTIPKIVGEG 299 Query: 51 LYGVHTVSAALNNPSRKIFQLLATKN-----------ALARLDWDANLPHPFPVKTVPPQ 99 +YGV V AAL+ R+ + L + + L + Sbjct: 300 IYGVGPVLAALSAGRREFYALYVQEGLDLSGNNRKKKDKKGFEKVLKLAEKIGLSIKDLS 359 Query: 100 TID-KIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 D +V HQGL L+ +PL P L L + LD V DP N+GAI+ Sbjct: 360 KHDLNMVVDNRPHQGLVLDASPLEMVKIKELDPVLTEGEKGPLWVALDEVTDPQNLGAII 419 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F G++ + S S V++K+++G+LE + N+ L G+Q +G Sbjct: 420 RSAYFFGVSGVVLCAKNSAPLSGVVSKASAGSLELMELRFCKNMMQFLTSSAENGWQVLG 479 Query: 212 LSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLH--------------- 255 S + EI L+LG+EG GLRP + + T + + Sbjct: 480 GSVSPRAIPLNEISPGAPTILVLGSEGTGLRPLVERSCTQLIRIPGNIPVHVTAGEVEDV 539 Query: 256 ----MPGI-----------IKALNVSNAAAVALYIT 276 M +++LNVS AA V L+ Sbjct: 540 DTSEMDRRCLTEDFQSFLAVESLNVSVAAGVLLHHL 575 >gi|310764912|gb|ADP09862.1| putative methyltransferase [Erwinia sp. Ejp617] Length = 344 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 85/243 (34%), Gaps = 6/243 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + + R + TV Sbjct: 101 RRQRMEETRVYGENACQALFQSRPESIVRAWFVQGVTPRFREALKWMAANRKAYHTVDDA 160 Query: 100 TIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K G V + +S L ++ L+ + +PHN+G I+RS Sbjct: 161 ELQKASGTEHHGGVCFLIKKRVGMPVSEWLAQAGQKDCVVALEDIGNPHNLGGIMRSCAH 220 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F G++ S ES ++A G EH+ I + L G+ + SS Sbjct: 221 FGAKGLLV-DDASLLESGAAVRTAEGGAEHVQAISGESFAAGLDAFRQAGYTIVTTSSHQ 279 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 PL K+ L+LG E GL T + + G +++LNVS A V L Sbjct: 280 GVPLSTAELPAKMVLVLGQERDGLSDSTFQQGDLSVSISGTGNVESLNVSVATGVLLAEW 339 Query: 277 QNH 279 Sbjct: 340 WRQ 342 >gi|298346967|ref|YP_003719654.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|315656580|ref|ZP_07909467.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298237028|gb|ADI68160.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|315492535|gb|EFU82139.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 275 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 93/262 (35%), Gaps = 16/262 (6%) Query: 26 NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLD 82 ++ +++ + + + G V+ L+ + + L T+ A Sbjct: 9 DNPGSDRIRKVAGLSRRSARLRSGLTRVEGPQAVTELLHCAPQGAVTDLYVTEAGAATRP 68 Query: 83 WDANLPH------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 + TV PQ + QG P++ L + Sbjct: 69 ELLEFAQSTVSAGGLHIHTVSPQVEKALSDA---AQGWIAVARFEAFPSVTGSPEGSLAL 125 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-- 194 +L DP N+G ++R A A + + + + S + +++ G++ H+P R + Sbjct: 126 ILPATQDPGNVGTLIRLADACGASTVFMGQDCADATSPKVIRASVGSVFHVPTPRFQDLA 185 Query: 195 --LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + + + ++ N K+A ++G E GL + + Sbjct: 186 AVVKALRSEGWTIVGTSLSGDVMLTPVTAGTWSNKKVAWVMGNEAHGLDATEESWCDVLV 245 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M G ++LNV++AA + L+ Sbjct: 246 SIPMFGRAESLNVTSAATLCLW 267 >gi|255324981|ref|ZP_05366088.1| 23S ribosomal RNA methyltransferase [Corynebacterium tuberculostearicum SK141] gi|255297970|gb|EET77280.1| 23S ribosomal RNA methyltransferase [Corynebacterium tuberculostearicum SK141] Length = 268 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 93/263 (35%), Gaps = 10/263 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 +++ N+ + S + G V + L + +L+ + + Sbjct: 6 PADPRLDDIRNLNKSDK--SGEGLVIAEGP-LVVSRLAESRFPMRRLVGFPKKVEAYISE 62 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 P P+ V +T+ ++ G + +A + + ++ + VL+ V D Sbjct: 63 YGEPE-CPIYEVSRETLAEVAGFDMHRGLVAAADRAPEPEVSEILETAKTIAVLEGVGDH 121 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIGAI R A D ++ + + + G + +P+ + Q+ Sbjct: 122 ENIGAIFRHAAGMGVDAVLLGSGAADPLYRRSVRVSMGHVLRLPFAHLEGGFTTWQRSLQ 181 Query: 205 WGFQTIGLSSDSKKPLEQEIKN------DKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + DK+A+++GAEG GL + A + M Sbjct: 182 ALADASFTLISLTPNPQAVHLAEAMHGLDKVAMLVGAEGPGLTEHAMKATDIRARIPMAP 241 Query: 259 IIKALNVSNAAAVALYITQNHFA 281 +LNV+ AAA++ Y Q + Sbjct: 242 GTDSLNVATAAAISFYERQRSLS 264 >gi|288957949|ref|YP_003448290.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510] gi|288910257|dbj|BAI71746.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510] Length = 271 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 95/257 (36%), Gaps = 6/257 (2%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW- 83 + + ++ + G V + + + LL + + L+ Sbjct: 10 PEDPRIEPYRDVRER-DLVGRDGLFIAEGAVVVRSLVQSSRTLARSLLVAEKRVTALEPM 68 Query: 84 DANLPHPFPVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 A LP PV T +D+I G + + P + LDA +++L Sbjct: 69 LAALPPGTPVYTATQPVLDRIAGFPLHRGILAVGERISIPSAADLLDACGPVARVVMLFG 128 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + + N+G I R+A AF D +I + + GA +P R+ D L Sbjct: 129 IGNHDNMGGIFRNAAAFGADAVILDPGCCDPLYRKAIRVSVGATLLVPTARLDAGEDPLA 188 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + F+ + LS + L + AL+ G+EG GL P A + M G Sbjct: 189 LLDRFRFEAVALSPAGAETLAALTPPRRAALLFGSEGPGLPPALLARA-RSVRIPMAGGF 247 Query: 261 KALNVSNAAAVALYITQ 277 +LNV+ + + L+ Sbjct: 248 DSLNVATTSGIVLHHVA 264 >gi|240047304|ref|YP_002960692.1| TRNA/rRNA methyltransferase [Mycoplasma conjunctivae HRC/581] gi|239984876|emb|CAT04869.1| TRNA/rRNA methyltransferase [Mycoplasma conjunctivae] Length = 229 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 12/228 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 F+ G H++ A+ N F L K L + VP ++++ + Sbjct: 4 FICGKHSLLEAIENNIPFKFIYLTKK-------PTEALLAKQNYQIVPMSFLNQLT--TS 54 Query: 110 VHQGLALETAPLLSPTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQG + P+ L+ L++LDH+ DP+N+GAI+RSA A II + Sbjct: 55 NHQGYVGQIEPIRFYPLEVLQKEQPNYLLILDHIQDPYNLGAIIRSANAMGVKHIILPNK 114 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKN 226 + + V K +SG I +I +++L+ A++K+ WGF + D ++ N Sbjct: 115 RASKITEVSLKVSSGGFVGIKFIEVNSLSTAIEKLKKWGFWVYASALDKSSLEIDSVNLN 174 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A+I+G+E KG+ + A + ++ M G +++LNVS A + L+ Sbjct: 175 TPAAIIVGSESKGVSKTILKQADEIFYIPMFGSVQSLNVSVATGIILF 222 >gi|157736425|ref|YP_001489108.1| TrmH family tRNA methyltransferase [Arcobacter butzleri RM4018] gi|315635558|ref|ZP_07890824.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22] gi|157698279|gb|ABV66439.1| tRNA methyltransferase, TrmH family [Arcobacter butzleri RM4018] gi|315480316|gb|EFU70983.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22] Length = 229 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 92/230 (40%), Gaps = 3/230 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG V L N + + ++ +K +L + L + + Q + + K Sbjct: 2 IIYGKQIVLYVLENHPKLVEEVFLSKEIDNKL-FSKFLKLGKKIHRLDNQK-AQALAKGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD-GIITTKRY 168 HQG L+ + + ++ ++VLD V D NIGAI R+A + D I + + Sbjct: 60 NHQGFFLKLSQFDYAPIKELKAMNFILVLDGVTDVGNIGAIARTAYSLGIDGIIASNIKT 119 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + V + + S + + + K + K+DK Sbjct: 120 INNSGIVRTSAGALLDLPFCIHPRSADLASELIDAGFTLIGATMDGVDLKKYGKIEKSDK 179 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +AL LG+EG+G+ PK + + M +LNVS AA + +Y + Sbjct: 180 VALFLGSEGEGISPKVAKKLDLKVSIKMEHEFDSLNVSVAAGILIYNLKR 229 >gi|304389322|ref|ZP_07371287.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327440|gb|EFL94673.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 275 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 93/262 (35%), Gaps = 16/262 (6%) Query: 26 NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLD 82 ++ +++ + + + G V+ L+ + + L T+ A Sbjct: 9 DNPGSDRIRKVAGLSRRSARLRSGLTRVEGPQAVTELLHCAPQGAVTDLYVTEAGAATRP 68 Query: 83 WDANLPH------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 + TV PQ + QG P++ L + Sbjct: 69 ELLEFAQSTVSAGGLHIHTVSPQVEKALSDA---AQGWIAVARFEAFPSVTGSPEGSLAL 125 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-- 194 +L DP N+G ++R A A + + + + S + +++ G++ H+P R + Sbjct: 126 ILPATQDPGNVGTLIRLADACGASTVFMGQDCADATSPKVIRASVGSVFHVPTPRFQDLA 185 Query: 195 --LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + + + ++ N K+A ++G E GL + + Sbjct: 186 AVVKALRAEGWTIVGTSLSGDVMLTPVTAGTWSNKKVAWVMGNEAHGLDATEESWCDVLV 245 Query: 253 HLHMPGIIKALNVSNAAAVALY 274 + M G ++LNV++AA + L+ Sbjct: 246 SIPMFGRAESLNVTSAATLCLW 267 >gi|313773496|gb|EFS39462.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL074PA1] gi|313831288|gb|EFS69002.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL007PA1] gi|313834898|gb|EFS72612.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL056PA1] gi|314974163|gb|EFT18259.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL053PA1] gi|314976546|gb|EFT20641.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL045PA1] gi|314984365|gb|EFT28457.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL005PA1] gi|315095303|gb|EFT67279.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL038PA1] gi|327328435|gb|EGE70197.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL096PA2] gi|327444221|gb|EGE90875.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL043PA2] gi|327444899|gb|EGE91553.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL043PA1] gi|328760022|gb|EGF73604.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL099PA1] Length = 269 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 9/243 (3%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY ++ N + ++ G + A LLA + D L Sbjct: 16 ADYVNLRDVNLRKSLEAEHGLFIAEGAKVIRRACEAGYPPRSFLLAPRWIDGLRDLFDGL 75 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V V +T+ + V VH+G + + ++ L+V + + D N+ Sbjct: 76 --DVEVFVVS-ETLAEQVTGFHVHRGALASMCRQTRWSAADLMAARRLVVCEDIVDHTNV 132 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQK 201 GAI+R A DG++ R + K++ G + +P+ R+ + Sbjct: 133 GAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGELRDHGF 192 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + + + + K+AL++G EG GL A + + M G + Sbjct: 193 TVAAMALSGDSVTLDEVSADLRQNPRKVALLMGTEGAGLSAHWISQADVVVRIPMAGGVD 252 Query: 262 ALN 264 +LN Sbjct: 253 SLN 255 >gi|240144927|ref|ZP_04743528.1| tRNA/rRNA methyltransferase [Roseburia intestinalis L1-82] gi|257203016|gb|EEV01301.1| tRNA/rRNA methyltransferase [Roseburia intestinalis L1-82] Length = 296 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 92/261 (35%), Gaps = 26/261 (9%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-------------- 87 +P + AL+ + L+ K+ + Sbjct: 30 FEPKPGIFIAESPKVIERALDAGCVPMSFLMEKKHVETQAKEILARCDKLQSRDLTQESL 89 Query: 88 -----PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 H PV + + KI G + L P LS +N++ + +L++V Sbjct: 90 VYREDEHVIPVYVAEVEMLAKITGYQLTRGMLCAMYRPALSSVEQLCKNARRVAILENVV 149 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 +P N+GAI RSA A D ++ T + ++ + G + IP+ Sbjct: 150 NPTNVGAIFRSAAALGMDAVLLTPACADPLYRRASRVSMGTVFQIPWTYFDKNACWPDGA 209 Query: 203 HSWGFQTIGLSSDS-------KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + ++ E+ + +K+A++LG EG GL T + Sbjct: 210 MDVLHKLGYKTAAMALRDDSVCIDDEKMMSEEKLAIVLGTEGDGLADHTIADCDYTVKIP 269 Query: 256 MPGIIKALNVSNAAAVALYIT 276 M + +LNV+ A+AVA + Sbjct: 270 MTHGVDSLNVAAASAVAFWQL 290 >gi|148656461|ref|YP_001276666.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus sp. RS-1] gi|148568571|gb|ABQ90716.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus sp. RS-1] Length = 432 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 87/252 (34%), Gaps = 8/252 (3%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-- 89 +++ + G S AL+ + + T L L Sbjct: 177 RLRDL-GNAAGRRARGQFLAEGSLLASRALD--DLPVEDMFYTGELLRDPAGAPLLQRAG 233 Query: 90 --PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P + + I + + + +++V + +++P N+ Sbjct: 234 DLGVPAYRISDGLMGLITPTRPLPAIVTAIWGRVRDVAAYRPGKQAVILVAEQISNPENL 293 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G LR+A A + + ++A GA+ IP ++L + ++ + G Sbjct: 294 GMTLRTADAAG-AEAVVVAGGADPLHRECVRAARGAVGRIPIYSCADLPAWIGQLRTQGI 352 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +G + + ++ L +A+++G E GL T +S+ + M +LNV Sbjct: 353 PVVGATGNVERELYDVDLPIPLAIVVGNETDGLTDATLAACSSLVRIPMAPGQDSLNVGV 412 Query: 268 AAAVALYITQNH 279 AA V LY Sbjct: 413 AAGVLLYDVVRR 424 >gi|297522035|ref|ZP_06940421.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli OP50] Length = 103 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 42/83 (50%) Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ + +G + ++ L Q ++AL++GAEG+G+R T+E + + M G Sbjct: 21 MRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAG 80 Query: 259 IIKALNVSNAAAVALYITQNHFA 281 + +LNVS A + L+ + Sbjct: 81 SVSSLNVSVATGICLFEAVRQRS 103 >gi|300718026|ref|YP_003742829.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661] gi|299063862|emb|CAX60982.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661] Length = 345 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 85/243 (34%), Gaps = 6/243 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + + R + V Sbjct: 102 RRQRLEETRVYGENACQALFQSRPDCIVRAWFVQEVTPRFREALKWMAANRKAYHVVDEA 161 Query: 100 TIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K G V + +S L ++ L+ + +PHN+G ++RS Sbjct: 162 ELVKASGTEHHGGVCFLIKKRVGMPVSEWLSNAGEKDCVVALEQIGNPHNLGGMMRSCAH 221 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F G++ S ES ++A G EH+ I + + L G+ + SS Sbjct: 222 FGAKGLLV-DDASLLESGAAVRTAEGGAEHVQAISGESFAEGLNAFRKAGYTIVTTSSHK 280 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 PL Q K L+LG E GL T + + G +++LNVS A + L Sbjct: 281 GTPLAQAELPAKTVLVLGQERDGLSDSTWQQGDLSVSIGGTGNVESLNVSVATGILLAEW 340 Query: 277 QNH 279 Sbjct: 341 WRQ 343 >gi|226331060|ref|ZP_03806578.1| hypothetical protein PROPEN_04990 [Proteus penneri ATCC 35198] gi|225201855|gb|EEG84209.1| hypothetical protein PROPEN_04990 [Proteus penneri ATCC 35198] Length = 367 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 78/243 (32%), Gaps = 5/243 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A N I + ++ R + V + Sbjct: 122 RRQRLEETRIYGENACQAMFKNRPDAIVRAWFLQDVTPRFRDALKWMAANRKAYHVVEEE 181 Query: 100 TI---DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + V + L ++ L+ V +PHN+GAI+RS Sbjct: 182 EMVKAARTDHHGGVCFLIKKRVGHDAETYLKDAPEHDCVLALEDVGNPHNVGAIMRSCAH 241 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F G+I+ A + + GA + + + S Sbjct: 242 FGVKGVISPDSAVLESGAAVRTAEGGAEYIQGIDADNFAQTLDKFKKAGYTLVATSSHKG 301 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 PL + K+ LILG E GL T ++ G +++LNVS A+ V L Sbjct: 302 SVPLSKAQLPAKMVLILGQEKDGLSESTLNQGDMSIYIGGTGHVESLNVSVASGVLLAEW 361 Query: 277 QNH 279 Sbjct: 362 WRQ 364 >gi|237733780|ref|ZP_04564261.1| tRNA/rRNA methyltransferase [Mollicutes bacterium D7] gi|229383118|gb|EEO33209.1| tRNA/rRNA methyltransferase [Coprobacillus sp. D7] Length = 238 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 98/251 (39%), Gaps = 19/251 (7%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K + QK ++ + + + G H V+ AL ++ ++ + + Sbjct: 7 NSTIKTLMKLKQK-KYRDEMKAYLVEGDHLVTEALKANQVELLISTKHIDSELEVLEVSE 65 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 + K+ ++ +A + R ++LD + DP N Sbjct: 66 E------------VMAKLAFTKSPQSIMAKCRMQKEIQLKEGRRY----LLLDDLQDPGN 109 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IG ++R+A+AFS D +I + + L +S GA H+ I + Q Sbjct: 110 IGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHLSCIYGNLTQLISQLQEKGV 169 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + K + + K+A ++G EG G+ P+ + ++ + I++LNV+ Sbjct: 170 VVIGSALENGKNIAQINRYS-KMAFVVGNEGNGMNPEVLAKCDDIGYIPIN-TIESLNVA 227 Query: 267 NAAAVALYITQ 277 A ++ +Y + Sbjct: 228 IAGSIMMYHFK 238 >gi|307721996|ref|YP_003893136.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM 16294] gi|306980089|gb|ADN10124.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM 16294] Length = 262 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 85/252 (33%), Gaps = 11/252 (4%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 YK+++ +S + V+ L + + I +L T+ L + Sbjct: 16 YKELRDNAFRSDR-----SFIADSPKVVNLLLQSDIQ-IKSILVTQEYYDEFMPLVALKN 69 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 + + + KIVG + H + ++ +++LD++ N+G+ Sbjct: 70 IPKIYLTTKEEMGKIVGHKIHHN---CMAHGIRPDDIELSSAGDRIIMLDNITSSENVGS 126 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASG-ALEHIPYIRISNLTDALQKMHSWGFQ 208 I RSA A K + + + G A ++ + Sbjct: 127 IARSAAALGVKSYFLPKSSPHPFNRRALRVSMGYAHMLGIHVYKDIFETIEALKAAGYRV 186 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + PL K LI+G EGKG+ + + + M IK+ NV A Sbjct: 187 YAAEVTPDSTPLSSLHVTSKWVLIMGHEGKGISQDILDVCDEVVSIEMQEGIKSFNVGVA 246 Query: 269 AAVALYITQNHF 280 A++ +Y Sbjct: 247 ASIMMY-AFRQR 257 >gi|229525446|ref|ZP_04414851.1| RNA methyltransferase TrmH family [Vibrio cholerae bv. albensis VL426] gi|229339027|gb|EEO04044.1| RNA methyltransferase TrmH family [Vibrio cholerae bv. albensis VL426] Length = 244 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 92/249 (36%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N + K+ + AT LA D Sbjct: 8 KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEHAQDLA---G 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K+ + + +A+ P ++ + L++ LD V+DP N+G I Sbjct: 63 FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II ++ + + + G+ + ++ + + Sbjct: 119 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S + + L++G+E G+R + + T + G ++LNV+ A Sbjct: 179 EGVSVHQ-----TAFQAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNIRRQ 242 >gi|258404224|ref|YP_003196966.1| RNA methyltransferase, TrmH family, group 3 [Desulfohalobium retbaense DSM 5692] gi|257796451|gb|ACV67388.1| RNA methyltransferase, TrmH family, group 3 [Desulfohalobium retbaense DSM 5692] Length = 244 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 94/239 (39%), Gaps = 10/239 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G+H V L ++ +L K + D + +P +DK++ Sbjct: 7 VVAGLHPVKELLERTPDRVETVLLQKGGRQQKEIKDLCQATGIRFQILPRAQLDKLIS-- 64 Query: 109 AVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 A HQG+A LL+ LD V DP NIG + R+ + G+ Sbjct: 65 AHHQGIAARVFSPGFVDPQVLLETVADAPLPLLIALDQVQDPGNIGTLARTLYSLGGAGL 124 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLE 221 + K S K++SGAL ++P +++NL L++ + + + Sbjct: 125 VLPKNRSAPLGGGALKASSGALNYLPVAQVTNLGRFLEQATQAALPVIGTGLTPDSLSVY 184 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + L+LG E KG+RP + ++ + + +LNV+ A A+ + Sbjct: 185 KARLSTPAVLVLGNEHKGMRPGVAKKCETVVSIPLQRQFDSLNVAQAGAILISEFLRQR 243 >gi|213966333|ref|ZP_03394515.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum SK46] gi|213951039|gb|EEB62439.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum SK46] Length = 276 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 98/250 (39%), Gaps = 12/250 (4%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-----NLPHPFPV 93 ++ + + G ++V AA+ + ++ T A + + V Sbjct: 27 RAAKRKKAGRFLVEGFNSVDAAIRA--EAVVEIFVTAPAAEQFCELLTGYLESGTQRKSV 84 Query: 94 KTVPPQTIDKIVGKEAVHQGLALE----TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 + + A+ + L ++ + S L++ NDP N+G Sbjct: 85 SLIDDSAARSLSETVTTTGLFAVCDTGAVSTSLEEAIEVGKQSGCLVIPVECNDPGNVGT 144 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R A +I ++ +S++G++ H P R ++ ++++ GF T Sbjct: 145 IVRMTDALGAGAVILAGDSVDPLNSKAVRSSAGSVFHTPVARERDIDVVVERVREAGFTT 204 Query: 210 IGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + + D L + D +A + G E GL + +A + + + G ++LN++ A Sbjct: 205 LATAMDGALTLGVDALPDGPVAWLFGNEAHGLSEEITASAGASVAIPIKGEAESLNLATA 264 Query: 269 AAVALYITQN 278 AA+ L+ T Sbjct: 265 AAMCLWETVR 274 >gi|123966264|ref|YP_001011345.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9515] gi|123200630|gb|ABM72238.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9515] Length = 349 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 81/286 (28%), Positives = 135/286 (47%), Gaps = 30/286 (10%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN----------------LFLYGVHTVSAA 60 + +K + + + + + + + +++G H+V A Sbjct: 62 NILRSKAKSRNNFIQPKRKISTNNTKAEKYAENSSKNLLINTNVKTFDDWIWGKHSVFAT 121 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 L N R I ++ T + + L V+ V + ++ AVHQG+AL Sbjct: 122 L-NTERPINRIWCTSEIFSSEKFFLLLKDLKSKGVLVEEVSWSRLSQLTS-GAVHQGVAL 179 Query: 117 ETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 + A + +LD N+ + + LD + DPHN+GAI+RSA AF C GII +R S Sbjct: 180 QLATSQTLSLDKLIGITKSKSNNPIFVALDGITDPHNLGAIIRSAEAFDCKGIIIPQRRS 239 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +AK A+GALEHIP R+ NL A+ ++ GF +GLS D + P+ + + I Sbjct: 240 AGLTGTVAKVAAGALEHIPVSRVVNLNRAIDELKKNGFLIVGLSGDGQIPISKFDQKAPI 299 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV-ALY 274 +++GAE KG+ TQ+ + + + G +LN S AAA+ Y Sbjct: 300 VVVVGAENKGISLLTQKKCDYLLKIPLRGKTSSLNASVAAAISLCY 345 >gi|119946835|ref|YP_944515.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37] gi|119865439|gb|ABM04916.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37] Length = 247 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 41/242 (16%), Positives = 89/242 (36%), Gaps = 9/242 (3%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 K+ ++ + + + G V L N + QL AT + + + N Sbjct: 8 KLIHALEQKKQRKKNGLFLVQGEKNVGE-LFNSDFTVKQLFATSSYINKNSRALNEFGLV 66 Query: 92 PV-KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + + K + + LA L ++ +L++VLD V DP N+G I Sbjct: 67 SLTIEATEDELKKAGTLISNNSVLA--VVECKIMPLPQIQKDELILVLDQVGDPGNLGTI 124 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II + + + + ++ G+ + Q+ + + Sbjct: 125 IRVADWYGIKHIICSPDCADFYNPKVIAASMGSFARVQVSHTDLSEYLSQQSMAIYGAFL 184 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + K N +++G+E G+ P+ ++ + + G ++LNV+ A Sbjct: 185 EGENIHK-----ANLNKSAFIVMGSESHGISPEIEKFISHKMTIPSFGGAESLNVAMATG 239 Query: 271 VA 272 + Sbjct: 240 II 241 >gi|87199385|ref|YP_496642.1| RNA methyltransferase TrmH, group 3 [Novosphingobium aromaticivorans DSM 12444] gi|87135066|gb|ABD25808.1| RNA methyltransferase TrmH, group 3 [Novosphingobium aromaticivorans DSM 12444] Length = 271 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 97/222 (43%), Positives = 135/222 (60%), Gaps = 5/222 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPHPFPVKTVPPQTIDKIVGKE 108 L+G H V AAL NP+R +L T+ A+ D DA LP PV+ + ++V K+ Sbjct: 36 LWGRHAVEAALTNPNRDAKKLWGTREAIQAMLDDHDAELPASLPVEYAQAADLGRLVAKD 95 Query: 109 AVHQGLALETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 A HQGL L+ APL LD V + + ++VLD V DPHN+GAILRS AF ++T Sbjct: 96 APHQGLVLDCAPLDDVVLDDVLDEAEGRTIVVLDSVTDPHNVGAILRSCAAFDVAALVTQ 155 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 R++P ES LAKSASGALE +P++R+ NL+ AL++M G+ IGL D K + Sbjct: 156 DRHAPPESGTLAKSASGALEIVPWVRVVNLSRALERMSEEGYWRIGLDGDGKAVFPAALP 215 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + +AL+LGAEG+GLR + S+A L + I++LNVSN Sbjct: 216 SGPVALVLGAEGEGLRHNVAQHCDSIARLPIASAIESLNVSN 257 >gi|257467228|ref|ZP_05631539.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|315918357|ref|ZP_07914597.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|313692232|gb|EFS29067.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 257 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 87/236 (36%), Gaps = 11/236 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + + G L + L ++ P+ ++ + Sbjct: 26 YREEAKLFLAEGRK----FLEYSENASYVLFRED---IPIEETILEKFNCPIISLSSKCF 78 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +K+ V + + R+++ L++LD + DP N+G I+R A Sbjct: 79 EKVS----VQENSQGVIILYSYKNIVLSRDARQLIILDDIQDPGNLGTIIRLVDASGFSD 134 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II TK + + +S+ G++ H+ + + + + P Sbjct: 135 IILTKNSVDYYNEKVVRSSMGSIFHVNLHTMEKIEIVDYLKKQQYNIVVTSLQEDSIPYM 194 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +++ A + G EG G+ + + A + + G ++LNV+ A + L+ ++ Sbjct: 195 EMSLDERNAFVFGNEGHGVSKEFLDIADEKVIIPISGQAESLNVAMALGILLFYSR 250 >gi|270296788|ref|ZP_06202987.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317480146|ref|ZP_07939256.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36] gi|270272775|gb|EFA18638.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316903693|gb|EFV25537.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36] Length = 253 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 85/255 (33%), Gaps = 15/255 (5%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S QK ++ + G V L LLAT L+R L Sbjct: 7 RIKYIHSLEQK-KNRKADKVFLAEGPKLVGDLL--GHFPCQFLLATSEWLSRNRP---LS 60 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V V + + + + Q LA+ P + + L + LD V DP N+G Sbjct: 61 TVTDVTEVSEEELSRASLLKTPQQVLAVFRQPDEETDISVIS-HSLCLALDDVQDPGNLG 119 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I + + A + T + + S Sbjct: 120 TIVRLADWFGIEHIFCSPNTVDIYN----PKTVQATMGGIARVRLHYTPLPEFIRSLKDI 175 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264 + + + + + + +++G EG G+ + + ++ ++LN Sbjct: 176 PVYGTFLDGENMYGQPLSKNGLIVMGNEGNGIGKEVEALINRKLYIPNYPASRETSESLN 235 Query: 265 VSNAAAVALYITQNH 279 V+ A AV + Sbjct: 236 VAIATAVVCAEFRRQ 250 >gi|218297230|ref|ZP_03497886.1| tRNA guanosine-2'-O-methyltransferase [Thermus aquaticus Y51MC23] gi|218242423|gb|EED08963.1| tRNA guanosine-2'-O-methyltransferase [Thermus aquaticus Y51MC23] Length = 194 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 1/150 (0%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 L +++++V+ PHN+ AILR+ A + S ++ Sbjct: 20 QPDLTVLMENVHKPHNLSAILRTCDAVGILQAHAVNPTGGVPTFNETSGGSHKWVYLEVH 79 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + + + L + + A++LGAE G+ + A Sbjct: 80 PTTEAAFRHLRERGFSVYATALKEG-ARDYREVDYTRPTAIVLGAEKWGVSEEALALADG 138 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + H+ M G++++LNVS AAAV L+ Q Sbjct: 139 LIHIPMLGMVQSLNVSVAAAVILFEAQRQR 168 >gi|150006258|ref|YP_001301002.1| putative rRNA methylase [Bacteroides vulgatus ATCC 8482] gi|149934682|gb|ABR41380.1| putative rRNA methylase [Bacteroides vulgatus ATCC 8482] Length = 268 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 85/233 (36%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + + R + +S AL+ + + K+ P Sbjct: 20 LTEAQLRQRMEPGKGVFIAESPNVISRALDAGYEPLALMCERKHISGSAAHIIKRCGDVP 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + + + G L P+L + R+++ ++V+D V D NIGAI R Sbjct: 80 VYTGDRELLTTLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIFR 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D ++ T+ + + + G++ +P+ ++ L K Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWLNGTIGDLNKFGFRTAAMALT 199 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 ++A+++G EG GL KT A + + M + +LNV Sbjct: 200 DDSISIDHPILAAEPRLAIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLNV 252 >gi|187924418|ref|YP_001896060.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phytofirmans PsJN] gi|187715612|gb|ACD16836.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phytofirmans PsJN] Length = 275 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 105/261 (40%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + + L G H A L+ + + T AL Sbjct: 16 KAITSRDNPLYKRLKALAGSTHQQRKSGHALLEGFHLAGAYLDVAGQPEMCI-VTDGALR 74 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G L L +P D V + L++ Sbjct: 75 HDEAQAIVARIEDHRVVTLPDALFGQLSNVVHGVGTLLLVEKLDTPLPDTVAQTCLVL-- 132 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +S GA + + Sbjct: 133 DGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDAEAQAL 192 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++++ T +++ + + +A + G EG G+ ++ + + PG Sbjct: 193 IERLAVPIVITDSHGAEAIYDCD---LSGPLAWVFGNEGAGVSQIWRDKVSLRVTIPQPG 249 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV ++ Sbjct: 250 GMESLNVAAAAAVCVFEQCRQ 270 >gi|171910482|ref|ZP_02925952.1| RNA methyltransferase, TrmH family protein [Verrucomicrobium spinosum DSM 4136] Length = 193 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 85/183 (46%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 Q K + ++ A + + L++VLD + DPHN+GA LR+A A Sbjct: 3 RQENQARANKHSNPTASIRIYEEDDLASVLADKPNPLVLVLDCIQDPHNLGACLRTADAA 62 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 CD ++ K + S + + A G E++P R++NL A+ K+ G +G + K Sbjct: 63 GCDLVVMPKDKTAPISDTVIRVACGGAENVPIARVTNLARAMDKLKDLGVWFVGTEDEGK 122 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + I +++GAEG+G+R T E + + M G + LNVS A V L+ Sbjct: 123 QSIYDVDLKGPIGIVMGAEGEGMRRLTGERCDFLVKIPMTGQVPCLNVSVATGVCLFEVV 182 Query: 278 NHF 280 Sbjct: 183 RQR 185 >gi|126698277|ref|YP_001087174.1| putative RNA methylase [Clostridium difficile 630] gi|115249714|emb|CAJ67531.1| putative tRNA/rRNA methyltransferase, SpoU [Clostridium difficile] Length = 226 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 90/214 (42%), Gaps = 2/214 (0%) Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 I + K +L D + + + ++V E + + + + Sbjct: 15 INEEFENKKEHVKLLEDLDK-KNTKIYKTTNKNFKELVDTENTQGIIGVVSFKKKKLSES 73 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + + +++LD + DP N+G I+R+A + D II K + + +S G++ Sbjct: 74 INKKDKFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIF-D 132 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 I ++ + + + S F + +++ ++ K+AL++G E G+ + Sbjct: 133 MNIIDASQDETVDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGNEANGINEELVSK 192 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + + + G ++LN + ++A+ +Y + + Sbjct: 193 SDILVKIPIYGKAESLNAAISSAILMYEIKKYLI 226 >gi|296284434|ref|ZP_06862432.1| tRNA/rRNA methyltransferase [Citromicrobium bathyomarinum JL354] Length = 267 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 82/252 (32%), Gaps = 5/252 (1%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 ++ K ++S +K +H + G+ ++ A + ++A+K Sbjct: 2 PRREITSYSNPTIKALRSLREK-KHRQRERRFLAEGLRLLTDARESGRVPEVLVMASKRD 60 Query: 78 LARLDWDAN---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134 L V P + KI GK+ S + + Sbjct: 61 PHPLIDALEHAVEAAGGDVIETTPDILSKITGKDNPQAVAGAFAEWDTSLDRIDRNAAPI 120 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +V + DP N+G +LR+A A G+I + +++ GA+ R Sbjct: 121 WLVAQALRDPGNLGTMLRTADAVGAGGLILIDDCADPFGVEAVRASMGAIFTQNLARARW 180 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + L + Q + S P +++G E +GL + + Sbjct: 181 E-EFLPWLRQGPGQLVAASLREAVPYRGAPYASPCFVMVGNESQGLPEAYETACDLRVTM 239 Query: 255 HMPGIIKALNVS 266 M G +LN + Sbjct: 240 PMRGRADSLNAA 251 >gi|259907580|ref|YP_002647936.1| putative methyltransferase [Erwinia pyrifoliae Ep1/96] gi|224963202|emb|CAX54686.1| Predicted tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96] gi|283477422|emb|CAY73338.1| hypothetical protein EPYR_00958 [Erwinia pyrifoliae DSM 12163] Length = 344 Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 84/243 (34%), Gaps = 6/243 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + + R + TV Sbjct: 101 RRQRMEETRVYGENACQALFQSRPESIVRAWFVQGVTPRFREALKWMAANRKAYHTVDDA 160 Query: 100 TIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K G V + +S L ++ L+ + +PHN+G I+RS Sbjct: 161 ELQKASGTEHHGGVCFLIKKRVGMPVSEWLAQAGQKDCVVALEDIGNPHNLGGIMRSCAH 220 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F G++ S ES ++A G EH+ I + L G+ + SS Sbjct: 221 FGAKGLLV-DDASLLESGAAVRTAEGGAEHVRAISGESFAAGLDAFRQAGYTIVTTSSHQ 279 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 PL K+ L+LG E GL T + G +++LNVS A V L Sbjct: 280 GVPLSTAELPAKMVLVLGQERDGLSDSTFRQGDLSVSISGTGNVESLNVSVATGVLLAEW 339 Query: 277 QNH 279 Sbjct: 340 WRQ 342 >gi|297700649|ref|XP_002827351.1| PREDICTED: LOW QUALITY PROTEIN: rRNA methyltransferase 1, mitochondrial-like [Pongo abelii] Length = 353 Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 106/263 (40%), Gaps = 28/263 (10%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-----LARLDWDANLPHPFPVKTVPPQT 100 L+G+ AL R + +LL PV Q Sbjct: 47 SRLELLFGLSPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRRQK 106 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRS 153 +D + + VHQG+ +E +PL QL +VLD + DPHN GA+LRS Sbjct: 107 LDTMCRYQ-VHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPHNFGAVLRS 165 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A D +IT++R S + V++KS++GA+E + +LT LQ G+ G Sbjct: 166 AHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225 Query: 214 SDSK-----------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPG 258 + + + L+LG EG GL + Q + + + +P Sbjct: 226 GCPSAEDPQSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPP 285 Query: 259 IIKALNVSNAAAVALYITQNHFA 281 +++LNVS AA + L+ + Sbjct: 286 GLESLNVSVAAGILLHSICSQRK 308 >gi|302390627|ref|YP_003826448.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter oceani DSM 16646] gi|302201255|gb|ADL08825.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter oceani DSM 16646] Length = 252 Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 99/238 (41%), Gaps = 9/238 (3%) Query: 51 LYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 + G + V AL+ P KI+ ++ + + + PV + P++ + + Sbjct: 11 IEGRNAVLEALSASMPLNKIYIKKGERHGVMQKIRELARSSGIPVVELDPKSFEHMARTR 70 Query: 109 AVHQGL------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + + + T + R + + VL+ + DP N+G+ILR+A G+ Sbjct: 71 NPQGVIALSSPKEYVSVDDILETAERRREAPFVFVLNEITDPQNLGSILRTADCLGVHGV 130 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I KR + + + K + GA ++ R++N+ + + + + +P + Sbjct: 131 IIPKRRACGVTPAVVKVSEGAAGYVNVARVTNI-ASTLECLKEKGLWVVGADMDGEPYHR 189 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +AL++G E KGL +E + L M G + +LN + AAAV Y Sbjct: 190 VDLTGPVALVIGGEDKGLGRLVREKCDLLVKLPMRGHVPSLNAAVAAAVLGYEILRQR 247 >gi|31792069|ref|NP_854562.1| rRNA methyltransferase [Mycobacterium bovis AF2122/97] gi|121636804|ref|YP_977027.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215402681|ref|ZP_03414862.1| putative rRNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|215410467|ref|ZP_03419275.1| putative rRNA methyltransferase [Mycobacterium tuberculosis 94_M4241A] gi|215426147|ref|ZP_03424066.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T92] gi|215429738|ref|ZP_03427657.1| putative rRNA methyltransferase [Mycobacterium tuberculosis EAS054] gi|215445022|ref|ZP_03431774.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T85] gi|218752546|ref|ZP_03531342.1| putative rRNA methyltransferase [Mycobacterium tuberculosis GM 1503] gi|219556746|ref|ZP_03535822.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T17] gi|224989275|ref|YP_002643962.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253800097|ref|YP_003033098.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435] gi|254231189|ref|ZP_04924516.1| hypothetical protein TBCG_00871 [Mycobacterium tuberculosis C] gi|254363812|ref|ZP_04979858.1| rRNA methyltransferase spoU [Mycobacterium tuberculosis str. Haarlem] gi|254549858|ref|ZP_05140305.1| rRNA methyltransferase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185777|ref|ZP_05763251.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A] gi|260199901|ref|ZP_05767392.1| rRNA methyltransferase [Mycobacterium tuberculosis T46] gi|260204083|ref|ZP_05771574.1| rRNA methyltransferase [Mycobacterium tuberculosis K85] gi|289442291|ref|ZP_06432035.1| rRNA methyltransferase [Mycobacterium tuberculosis T46] gi|289446446|ref|ZP_06436190.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A] gi|289555338|ref|ZP_06444548.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 605] gi|289568845|ref|ZP_06449072.1| rRNA methyltransferase [Mycobacterium tuberculosis T17] gi|289573507|ref|ZP_06453734.1| rRNA methyltransferase [Mycobacterium tuberculosis K85] gi|289744611|ref|ZP_06503989.1| rRNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|289749403|ref|ZP_06508781.1| rRNA methyltransferase [Mycobacterium tuberculosis T92] gi|289752936|ref|ZP_06512314.1| rRNA methylase [Mycobacterium tuberculosis EAS054] gi|289756966|ref|ZP_06516344.1| rRNA methyltransferase [Mycobacterium tuberculosis T85] gi|289761012|ref|ZP_06520390.1| rRNA methylase [Mycobacterium tuberculosis GM 1503] gi|294996361|ref|ZP_06802052.1| rRNA methyltransferase [Mycobacterium tuberculosis 210] gi|297633398|ref|ZP_06951178.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207] gi|297730383|ref|ZP_06959501.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN R506] gi|298524373|ref|ZP_07011782.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium tuberculosis 94_M4241A] gi|306792256|ref|ZP_07430558.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu005] gi|313657710|ref|ZP_07814590.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN V2475] gi|38258679|sp|P59968|Y905_MYCBO RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mb0905 gi|31617656|emb|CAD93766.1| POSSIBLE RRNA METHYLTRANSFERASE (RRNA METHYLASE) [Mycobacterium bovis AF2122/97] gi|121492451|emb|CAL70919.1| Possible rRNA methyltransferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600248|gb|EAY59258.1| hypothetical protein TBCG_00871 [Mycobacterium tuberculosis C] gi|134149326|gb|EBA41371.1| rRNA methyltransferase spoU [Mycobacterium tuberculosis str. Haarlem] gi|224772388|dbj|BAH25194.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253321600|gb|ACT26203.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435] gi|289415210|gb|EFD12450.1| rRNA methyltransferase [Mycobacterium tuberculosis T46] gi|289419404|gb|EFD16605.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A] gi|289439970|gb|EFD22463.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 605] gi|289537938|gb|EFD42516.1| rRNA methyltransferase [Mycobacterium tuberculosis K85] gi|289542599|gb|EFD46247.1| rRNA methyltransferase [Mycobacterium tuberculosis T17] gi|289685139|gb|EFD52627.1| rRNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|289689990|gb|EFD57419.1| rRNA methyltransferase [Mycobacterium tuberculosis T92] gi|289693523|gb|EFD60952.1| rRNA methylase [Mycobacterium tuberculosis EAS054] gi|289708518|gb|EFD72534.1| rRNA methylase [Mycobacterium tuberculosis GM 1503] gi|289712530|gb|EFD76542.1| rRNA methyltransferase [Mycobacterium tuberculosis T85] gi|298494167|gb|EFI29461.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium tuberculosis 94_M4241A] gi|308339179|gb|EFP28030.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu005] gi|323720590|gb|EGB29668.1| rRNA methyltransferase [Mycobacterium tuberculosis CDC1551A] gi|326904900|gb|EGE51833.1| rRNA methyltransferase [Mycobacterium tuberculosis W-148] gi|328459835|gb|AEB05258.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207] Length = 288 Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 99/254 (38%), Gaps = 6/254 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ + + GV V L + + L T LA L D Sbjct: 28 DFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPL-ALFGTDRRLAELKDDLA-G 85 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + +++G LA V ++ + VL+ VND N+G Sbjct: 86 VGAPYYRASADVMARVIGFHLNRGVLAAARRVPEPSVAQVVAGARTVAVLEGVNDHENLG 145 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +I R+A S D ++ + + + G +PY R ++ L + GF+ Sbjct: 146 SIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFR 205 Query: 209 TIGLSSDSKKPLEQ----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + ++ + +++IAL++GAEG GL + + M +LN Sbjct: 206 LLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLN 265 Query: 265 VSNAAAVALYITQN 278 V+ AAA+A Y Sbjct: 266 VATAAALAFYERTR 279 >gi|313639754|gb|EFS04505.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri FSL S4-171] Length = 190 Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 83/158 (52%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 +A ++LD + DPHN+G+I+R+A + GII KR + + +AK+++G Sbjct: 28 FNAAEAKGEMPFFIILDELEDPHNLGSIMRTADSVGAHGIIIPKRRAVGLTQTVAKASTG 87 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 A+E++P +R++N+ ++++ G G + + +A+++G+EG G+ Sbjct: 88 AMEYVPVVRVTNMVRTMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIVIGSEGFGMSR 147 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +E + HL M G + +LN S AA++ LY Sbjct: 148 LVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYRKR 185 >gi|307267644|ref|ZP_07549106.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii Rt8.B1] gi|306917333|gb|EFN47645.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii Rt8.B1] Length = 217 Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 83/223 (37%), Gaps = 11/223 (4%) Query: 58 SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 AL + + + ++P + I K + Q + Sbjct: 1 MEALKSDFEIEYIV-------MGEGVKIDIPKGDFEIAHTTERIFKKISDTVTPQMVMAI 53 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 ++ + ++ D++ DP N+G I+R+A AF I T + + Sbjct: 54 IKIPKYEENTYIKEKGVYVIADNIQDPGNLGTIIRTADAFGVSAIFTINNCVDIFNPKVL 113 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +++ G++ HIP I ++ K L + +DK+A +LG E Sbjct: 114 RASMGSIFHIPVIATTSQILLKLKRRGIKVFATHLKAQKLVHECNI--SDKVAFVLGNEA 171 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 KG+ + + M G ++LNVS AA++ LY +Q Sbjct: 172 KGVS--VVDLVDDFVKIPMTGEAESLNVSIAASIFLYESQRQR 212 >gi|262192463|ref|ZP_06050614.1| RNA methyltransferase TrmH family [Vibrio cholerae CT 5369-93] gi|262031622|gb|EEY50209.1| RNA methyltransferase TrmH family [Vibrio cholerae CT 5369-93] Length = 244 Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N + K+ + AT LA Sbjct: 8 KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVHHIFATAEFLAEHAQALA---G 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K+ + + +A+ P ++ + L++ LD V+DP N+G I Sbjct: 63 FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II ++ + + + G+ + ++ + + Sbjct: 119 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S + + L++G+E G+R + + T + G ++LNV+ A Sbjct: 179 EGVSVHQ-----TAFKAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNIRRQ 242 >gi|304373038|ref|YP_003856247.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma hyorhinis HUB-1] gi|304309229|gb|ADM21709.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma hyorhinis HUB-1] Length = 225 Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 112/228 (49%), Gaps = 11/228 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++ G +++ A+ N I ++ L ++ + NL + + V V +DK+ Sbjct: 4 YICGKNSLLDAIKNN-VPIKKIY-----LTKIVPNLNL-NTYQVHIVEKSFLDKLAKGI- 55 Query: 110 VHQGLALETAPLLSPTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQG E + ++ N + ++VLDH+ D HN+GAI+RSA A II K Sbjct: 56 NHQGFVAEIENVKYFPIESIFKDNPKRILVLDHIQDNHNLGAIIRSANAAGIKHIILPKD 115 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN 226 + + + +SG I +I +++L +K+ F S S + KPL+Q + N Sbjct: 116 NCAKINDSVIRISSGGFVGIKFILVNSLLATFEKLKKHNFWIYASSLSKTAKPLDQIVFN 175 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A++LG+E KG+ + + ++ M G +++LNVS AA + L+ Sbjct: 176 QPSAIVLGSEAKGISKSLLNQSDEIFYIPMQGTVQSLNVSVAAGIILF 223 >gi|238918595|ref|YP_002932109.1| methyltransferase [Edwardsiella ictaluri 93-146] gi|238868163|gb|ACR67874.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 357 Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 78/246 (31%), Gaps = 9/246 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + + R + V Sbjct: 110 RRQRAEETRVYGENACQALFASRPEAIVRAWFLQAVTPRFRDALRWMAANRKAYHVVDDA 169 Query: 100 TIDKIVGKEAVHQGLALETAP------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + K G + H G+ A ++ L++V +PHN+G I+R+ Sbjct: 170 ELTKASGTD-HHGGVCFLIKKRRSLDAQQYLANQAEDAVDCVLALENVANPHNLGGIMRT 228 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 F GII + + A + + GA + S Sbjct: 229 CAHFGIRGIIAPESAALESGAAVRTAEGGAEHVQAIDAEDFSATLDTFRRAGYTIVTTSS 288 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L + + KI L++G EG GL T + + G +++LNVS A + L Sbjct: 289 HKGTTQLHRAVLPAKIVLVVGHEGDGLSDGTLQQGDLSISIGGTGSVESLNVSVATGIML 348 Query: 274 YITQNH 279 Sbjct: 349 AEWWRQ 354 >gi|103486336|ref|YP_615897.1| RNA methyltransferase TrmH, group 3 [Sphingopyxis alaskensis RB2256] gi|98976413|gb|ABF52564.1| RNA methyltransferase TrmH, group 3 [Sphingopyxis alaskensis RB2256] Length = 272 Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 90/243 (37%), Positives = 135/243 (55%), Gaps = 21/243 (8%) Query: 40 SRHTSQPE--------NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 SRH + G H V AAL NP R + ++ T+ AL +LD LP Sbjct: 22 SRHRRPSGGNQRGQTVRFW--GRHAVLAALANPDRAVRRIWGTREALGQLD----LPPVI 75 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDP 144 P+ + ++V ++A HQGL +E PL L + + L++LD V DP Sbjct: 76 PISYADVADLARLVARDAPHQGLVIEVDPLDGVHLGDLLQEEVDAESRRPLVILDQVTDP 135 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HNIGA+LRSA AF I+T R+SP ES V+A+SASGALE +P++R+ NL+ AL+++ Sbjct: 136 HNIGAVLRSAAAFDAAAIVTQDRHSPPESGVIARSASGALETVPWVRVVNLSRALEEIAE 195 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + IGL D++ L + + K+AL+LG+EG G+R E +A L + +++LN Sbjct: 196 AQYWRIGLMGDTETTLGETLDGSKVALVLGSEGDGMRHNVMEHCDVLARLPISPRMESLN 255 Query: 265 VSN 267 +SN Sbjct: 256 ISN 258 >gi|293372857|ref|ZP_06619231.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|292632146|gb|EFF50750.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] Length = 147 Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 66/145 (45%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +LD V D N GAI R+ + D +I R S S +A K+++GAL +P R NL Sbjct: 1 MLDGVTDVRNFGAIARTCECAAVDAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLR 60 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 LQ + GF+ + + + + +I+GAE G+ + + M Sbjct: 61 STLQYLKDSGFRIVAATEKGDYDYTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPM 120 Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281 G I++LNVS AA + +Y Sbjct: 121 LGTIESLNVSVAAGILIYEAVKQRN 145 >gi|118100342|ref|XP_001235387.1| PREDICTED: hypothetical protein [Gallus gallus] Length = 317 Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 65/281 (23%), Positives = 116/281 (41%), Gaps = 33/281 (11%) Query: 31 KKMQSFNQKSRHT-----SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----- 80 ++ ++ + L+GV S AL+ R +F+L ++ + Sbjct: 32 REASKGRRRPEGRALPIERTRGSEILFGVAPCSMALSQARRDLFRLFLKRSGGPQRLVTS 91 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-----------V 129 PV V + +D + G VHQG+ LE PL L+ Sbjct: 92 EFVLQAAARGVPVLHVGRRELDTLCG-GRVHQGVCLEATPLRFKRLEEAEEPGLGDGESP 150 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 L + L+ + DP N+GA+LRSA D ++T++R S + ++K++SGA+E Sbjct: 151 NRQLLWLALEQIQDPMNLGALLRSAYFLGVDRVVTSQRNSCPLTPTVSKASSGAMEVFDV 210 Query: 190 IRISNLTDALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 +L L+ + G+ Q+ + + + N I L++G+EG GL Sbjct: 211 YSTDDLRSFLKAKAAEGWEVVGTVSQSETVENVPVISCLEFRWNKPIILVIGSEGDGLSL 270 Query: 243 KTQETATSMAHLH----MPGIIKALNVSNAAAVALYITQNH 279 +TQ M + + I++LNVS A + L+ + Sbjct: 271 ETQLLCHQMLVIPSGRALHPGIESLNVSVATGILLHSICSQ 311 >gi|330723348|gb|AEC45718.1| tRNA/rRNA methyltransferase [Mycoplasma hyorhinis MCLD] Length = 225 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 112/228 (49%), Gaps = 11/228 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++ G +++ A+ N I ++ L ++ + NL + + V V +DK+ Sbjct: 4 YICGKNSLLDAIKNN-VPIKKIY-----LTKIVPNLNL-NTYQVHIVEKSFLDKLAKGI- 55 Query: 110 VHQGLALETAPLLSPTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQG E + ++ N + ++VLDH+ D HN+GAI+RSA A II K Sbjct: 56 NHQGFVAEIENVKYFPIESIFKDNPKRILVLDHIQDNHNLGAIIRSANAAGIKHIILPKD 115 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN 226 + + + +SG I +I +++L +K+ F + S + KPL+Q + N Sbjct: 116 NCAKINDSVIRISSGGFVGIKFILVNSLLATFEKLKKHNFWIYASALSKTAKPLDQIVFN 175 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A++LG+E KG+ + + ++ M G +++LNVS AA + L+ Sbjct: 176 QPSAIVLGSEAKGISKSLLNQSDEIFYIPMQGTVQSLNVSVAAGIILF 223 >gi|282877059|ref|ZP_06285902.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310] gi|281300830|gb|EFA93156.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310] Length = 288 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 92/272 (33%), Gaps = 18/272 (6%) Query: 18 SHYAKLRR--NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 + K +R + K + + K + G V L++ + ++AT+ Sbjct: 21 PQHIKTKRMISKAKLKYINALQTK-KGRLAHGTFVAEGPKVVHDLLSS--FQPELIVATE 77 Query: 76 NALARLDWDANL----PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131 L R + + + V P + KI H L Sbjct: 78 QWLERHEDEILKGNQGDRRPQIIAVSPDELQKIS--LLQHPQEVLAVFEQRHMPAHIDPT 135 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +L++ LD + DP N+G I+R A F +I ++ + + + ++ G++ H+ Sbjct: 136 HELVLALDGIQDPGNLGTIIRIADWFGIRNVICSEDTADVYNPKVVQATMGSIAHVDVTY 195 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++ S L + +I+G EG G+ + Sbjct: 196 LNLCDFVDALPASTPVYGTLLDGEDIYQQ---TLTATGIIIMGNEGNGISKDLRARINHA 252 Query: 252 AHLH----MPGIIKALNVSNAAAVALYITQNH 279 + +P ++LNV+ A A+A + Sbjct: 253 LLIPNFSTLPNKAESLNVAIATAIACSEFKRR 284 >gi|254883838|ref|ZP_05256548.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319641488|ref|ZP_07996178.1| rRNA methylase [Bacteroides sp. 3_1_40A] gi|254836631|gb|EET16940.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317386889|gb|EFV67778.1| rRNA methylase [Bacteroides sp. 3_1_40A] Length = 268 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 85/233 (36%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + + R + +S AL+ + + K+ P Sbjct: 20 LTETQLRQRMEPGKGVFIAESPNVISRALDAAYEPLALMCERKHISGSAAHIIKRCGDVP 79 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + + + G L P+L + R+++ ++V+D V D NIGAI R Sbjct: 80 VYTGDRELLATLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIFR 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D ++ T+ + + + G++ +P+ ++ L K Sbjct: 140 SAAALGIDAVLLTRNSCDPLNCRAVRVSMGSVFLVPWTWLNGTIGDLNKFGFRTAAMALT 199 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 ++A+++G EG GL KT A + + M + +LNV Sbjct: 200 DDSISIDHPILAAEPRLAIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLNV 252 >gi|314923774|gb|EFS87605.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL001PA1] gi|314966212|gb|EFT10311.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL082PA2] gi|315095102|gb|EFT67078.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL060PA1] gi|315104331|gb|EFT76307.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL050PA2] gi|327328119|gb|EGE69888.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL103PA1] Length = 277 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 88/243 (36%), Gaps = 9/243 (3%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY ++ N + ++ G + A LLA + D L Sbjct: 16 ADYVSLRDVNLRKSLEAEHGLFIAEGAKVIRRACEAGYPPRSFLLAPRWIDGLRDLFDGL 75 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V V +T+ + V VH+G + + ++ L+V + + D N+ Sbjct: 76 --DVEVFVVS-ETLAEQVTGFHVHRGALASMCRQTRWSAADLMAARRLVVCEDIVDHTNV 132 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQK 201 GAI+R A DG++ R + K++ G + +P+ R+ + Sbjct: 133 GAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLDELRDHGF 192 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + S + + K+AL++G EG GL A + + M G + Sbjct: 193 TVAAMALSGDSLSLDEFSADLRQNPRKVALLMGTEGTGLSAHWISQADVVVRIPMAGGVD 252 Query: 262 ALN 264 +LN Sbjct: 253 SLN 255 >gi|150024430|ref|YP_001295256.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149770971|emb|CAL42438.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 242 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 89/253 (35%), Gaps = 21/253 (8%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S QK ++ Q + F G + L + + L TK + + Sbjct: 6 QIKLITSLVQK-KYRKQYQLFFAEGAKVIQELLQSNFE-LEHLYCTKPMFSDVSELKK-- 61 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + + KI + A P + NS L++ LD + DP N+G Sbjct: 62 -----TIISDSDLKKITALTTAND----CLAVFKIPQEKQIENSGLIVALDDIRDPGNLG 112 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R F I+ +++ + + ++ G++ + + + + Sbjct: 113 TIIRLCDWFGIAQIVCSEQTVDVYNPKVVQATMGSITRVNITYLDL-----ETYLAEAKT 167 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNV 265 + + K + + ++LG E G+ +E T + G ++LNV Sbjct: 168 AVFGTFMDGKDIYKTQLPPSGIIVLGNEANGISKIIEEKVTQKITIPRFGDLQRTESLNV 227 Query: 266 SNAAAVALYITQN 278 + A A+ L + Sbjct: 228 ATATAIVLSEFKR 240 >gi|171742772|ref|ZP_02918579.1| hypothetical protein BIFDEN_01886 [Bifidobacterium dentium ATCC 27678] gi|283456178|ref|YP_003360742.1| methylase [Bifidobacterium dentium Bd1] gi|306822630|ref|ZP_07456008.1| SpoU family rRNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|309800805|ref|ZP_07694937.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium JCVIHMP022] gi|171278386|gb|EDT46047.1| hypothetical protein BIFDEN_01886 [Bifidobacterium dentium ATCC 27678] gi|283102812|gb|ADB09918.1| rRNA methylase [Bifidobacterium dentium Bd1] gi|304554175|gb|EFM42084.1| SpoU family rRNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|308222341|gb|EFO78621.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium JCVIHMP022] Length = 290 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 35/269 (13%), Positives = 90/269 (33%), Gaps = 22/269 (8%) Query: 27 HRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 + ++++ + + + + + G +V L + L Sbjct: 10 NPKAERIRRVAELAERKGRKRAGRFLVEGPQSVRELLTWHPDIVRDLYVEAIGTEPDAPF 69 Query: 85 A----------NLPHPFPVKTVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLDAVRNSQ 133 + V V + + + V ++ + +++ ++ Sbjct: 70 LTDTVAQMAGKAMQAGAYVHKVTHAVMRHMSSDAQGVLAVADMQGFLDAAGNVESFGDNA 129 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP---YI 190 ++ V DP N G ++RSA A C ++ + + +S +G+L H+P Sbjct: 130 MVAAFWQVRDPGNAGTVIRSADAAGCAAVVFVDECVDIFNPKVIRSTAGSLFHLPVLTMG 189 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL------ILGAEGKGLRPKT 244 + ++ + + + ++ + L I G E +GL + Sbjct: 190 TEAFFAWCDERNLAIYAADVYGTDSRPPEPLTDVLAEPSTLAGAKTMIFGNEARGLTREV 249 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + + G ++LN+ +AAV L Sbjct: 250 LDRTDRIVSIPIYGKAESLNLGTSAAVML 278 >gi|148555341|ref|YP_001262923.1| RNA methyltransferase [Sphingomonas wittichii RW1] gi|148500531|gb|ABQ68785.1| RNA methyltransferase, TrmH family, group 3 [Sphingomonas wittichii RW1] Length = 247 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 90/221 (40%), Positives = 133/221 (60%), Gaps = 9/221 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 +G H V AAL NP R + +L T+ A++ L+ LP PV + ++V +A H Sbjct: 18 WGRHAVIAALANPDRTVKRLWGTREAVSALE----LPPVIPVTYADAADLGRLVPHDAPH 73 Query: 112 QGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 QGL +E PL L + + L+VLD V DPHN+GA+LRSA AF GI+T Sbjct: 74 QGLVIEVDPLPDIWLGDLLEAAQGDRRPLVVLDQVTDPHNVGAVLRSAAAFDAVGIVTQD 133 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R++P ES LA+SASGALE +P++R+ NL AL ++ GF IGLS ++ L Q + + Sbjct: 134 RHAPPESGALARSASGALELVPWVRVVNLARALDEIAEAGFWRIGLSGHARGTLAQVMGD 193 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +IA++LGAEG+G+R T+ +A L + +++LN+SN Sbjct: 194 SRIAIVLGAEGEGMRQNTEAHCDELAKLPISPKVESLNISN 234 >gi|227113626|ref|ZP_03827282.1| putative methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 383 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 87/244 (35%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A N S I + + R + V Sbjct: 139 RRQRQEETRVYGENACQALFKNRSEVIVRAWFLQEVTPRFRDALRWMAANRKAYHVVEED 198 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ L ++ L+ V +PHN+G I+RS Sbjct: 199 ELIKASGTE-HHGGVCFLIKKRQGLDVREYLKTAGEQDCVLALEDVGNPHNLGGIMRSCA 257 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I + L + + G+ + SS Sbjct: 258 HFGVKGVLV-QDAALLESGAAVRTAEGGAEHVKAINADDFLSVLTEFRNAGYTIVTTSSH 316 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L Q K ++LG EG GL + + G +++LN+S A + L Sbjct: 317 KGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSE 376 Query: 276 TQNH 279 Sbjct: 377 WWRQ 380 >gi|239815595|ref|YP_002944505.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus S110] gi|239802172|gb|ACS19239.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus S110] Length = 264 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 89/252 (35%), Gaps = 10/252 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ K+++ Q + ++L G H AAL R + + Sbjct: 12 SRDNPLLKELRKLAQDPGAYRRLGRVWLEGDHLCRAALARGIRPAVAVF--SESFWPSAP 69 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V + + G E+ + P L + +VLD + D Sbjct: 70 AEWASSAIKTVVVDDDLLRAVSGLESPAPMGFVLDLPARPELLPDAPS----VVLDRLQD 125 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N G+ILRSA AF +I K + + + ++ GA + Sbjct: 126 AGNAGSILRSAAAFGFKQVIALKGTAALWAPKVLRAGMGAHF----GLRLIEGVEADALD 181 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + SS L + A +LG EG+G+ + A+ + PG ++L Sbjct: 182 ELKVPLVATSSHRGDWLHEARLPHPCAWLLGHEGQGVSAALEARASHHIRIAQPGGEESL 241 Query: 264 NVSNAAAVALYI 275 NV+ AAA+ L+ Sbjct: 242 NVAAAAAICLHA 253 >gi|119953304|ref|YP_945513.1| 23S rRNA methyltransferase [Borrelia turicatae 91E135] gi|119862075|gb|AAX17843.1| 23S rRNA methyltransferase [Borrelia turicatae 91E135] Length = 244 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 106/239 (44%), Gaps = 15/239 (6%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV---- 110 +++ ++ N +L +K + + + + + + KI+G Sbjct: 7 NSIIESIKNNKG--LELYISK-ISPKSINIEKIAREYNTQIIKVNDLAKIIGNNNHRGFA 63 Query: 111 --------HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + + +N+ +++LD + DP N GAILR++ F+ D + Sbjct: 64 LKLKISKSNNTNKQDKNLEEFLEKFQYKNNVFILILDGIEDPQNFGAILRTSEQFNIDLV 123 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 IT++R S ++A +++SGA +++ + + N+ + ++ + GF K Sbjct: 124 ITSQRRSAKDNATTLRTSSGASQYVNKLIVPNINNVIKDLKKNGFWIYASDIKGKAINTI 183 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +I + KIALI+G EGKG+ +E + + + G I +LNVS + + ++ + Sbjct: 184 KINDTKIALIMGNEGKGIHKLIKENSDFLVKIPTTGKIDSLNVSVSTGILIFEIKRQLN 242 >gi|321472146|gb|EFX83117.1| hypothetical protein DAPPUDRAFT_302082 [Daphnia pulex] Length = 308 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 58/278 (20%), Positives = 103/278 (37%), Gaps = 30/278 (10%) Query: 32 KMQSFNQKSRHTSQPENL-FLYGVHTVSAALNNPSRKIFQLLATKNALA-----RLDWDA 85 + S +K + LYG+H +S AL R I + ++ L + + Sbjct: 26 DLMSLEKKQSPGREEFYFDILYGIHPISCALEAKRRTIETVYYRRDLLNHSGRVKEILER 85 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----------QL 134 +P ID IV K HQGL +T L ++ + Sbjct: 86 CWEENIKTLPIPSSKIDTIVPKGKPHQGLLAKTTRLYYIPTPCTQSIAQLSSEKEASKPV 145 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---------VLAKSASGALE 185 ++L+ + DP N G+ILRSA CD I T S S + + + Sbjct: 146 WLLLNEIQDPMNFGSILRSAYFMGCDKIFVTSHKSCSLTPVVSKASSGVMELMPIHSIMN 205 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + ++ + ++ P+ ++ +ILG EG+GL + Sbjct: 206 TTEFCQLLKESKWDVVGTGSKTDESNGTACKPTPVGSFQLSNPTLIILGNEGRGLPDELV 265 Query: 246 ETATSMAHL----HMPGIIKALNVSNAAAVALYITQNH 279 + T ++ ++ + ++NVS AAAV L+ N+ Sbjct: 266 DLCTHQIYVESRSNLNKNVDSMNVSAAAAVILHSVLNN 303 >gi|226227758|ref|YP_002761864.1| putative RNA methyltransferase [Gemmatimonas aurantiaca T-27] gi|226090949|dbj|BAH39394.1| putative RNA methyltransferase [Gemmatimonas aurantiaca T-27] Length = 265 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 80/249 (32%), Gaps = 5/249 (2%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPH 89 + Q+ + + G TV L + L+ ++ Sbjct: 6 LARDLQRRKGRERQHRFVAEGTRTVEGLLASGLPVTGVLVSASGLEDGRTAALVAQARDR 65 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 V V + E+ G+ + ++VLD + DP N+G Sbjct: 66 GVQVLEVGDAELMGAADTESPQ-GILAVAPIPDHRLPTPMPPCARILVLDALQDPGNVGT 124 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-IRISNLTDALQKMHSWGFQ 208 ++R+A A I +A + + + GAL H P A + ++ Sbjct: 125 VIRTAAALGVSATIALPGTVDLWNAKVVRGSMGALFHHPVLAMSWEDCAAQLGLAAFVIM 184 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + L D++AL+ EG GL T + M +++LNV A Sbjct: 185 AADTDGVNIADLRPGQVPDRVALVASNEGAGLSAHLASAVTQRVAIAMEPTVESLNVGVA 244 Query: 269 AAVALYITQ 277 + L+ + Sbjct: 245 TGILLHALR 253 >gi|260221272|emb|CBA29671.1| hypothetical protein Csp_A13310 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 66 Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + Q +AL+LGAEG G+R T +T + + M G +++LNVS A+ + LY Sbjct: 1 MYQADLKGPVALVLGAEGDGMRQLTAKTCDQLVSIPMQGAVESLNVSVASGLCLYEALRQ 60 Query: 280 FA 281 Sbjct: 61 RT 62 >gi|326384165|ref|ZP_08205847.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] gi|326197030|gb|EGD54222.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] Length = 288 Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 52/278 (18%), Positives = 93/278 (33%), Gaps = 13/278 (4%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 I ++ +D + R + + GV + + Sbjct: 20 IVDPSDPRVDDFRDLNSVDRRPDVPAL---------PGGRVGKGLVIAEGVLVAQRMIAS 70 Query: 64 PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 + LD D P P + + +++G LA P+ Sbjct: 71 RFAP-HAFFGVDRRMGELDADLRDPSLRGVPFYRASAEVMAEVIGFHLNRGVLAAARRPV 129 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 +D + +++ + VL+ VND NIG+I R+A D ++ + + + Sbjct: 130 ERTVVDVIEHARTVAVLEGVNDHENIGSIFRNAAGLGVDAVVFGAGCADPLYRRCVRVSM 189 Query: 182 GALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G +P+ + + S + PL + K+A ++GAEG GL Sbjct: 190 GHALLVPFAKSQDWPGDLDVLRDSGFTTVALTPGEGSVPLAGAVSGGKVAFLVGAEGPGL 249 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 T A + M +LNV+ AAAVA Y Sbjct: 250 AEHTMRRCDVRARIPMSRGTDSLNVATAAAVAFYERAR 287 >gi|193212564|ref|YP_001998517.1| tRNA guanosine-2'-O-methyltransferase [Chlorobaculum parvum NCIB 8327] gi|193086041|gb|ACF11317.1| tRNA guanosine-2'-O-methyltransferase [Chlorobaculum parvum NCIB 8327] Length = 221 Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 1/162 (0%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L R + L +V+D+VN PHN+ AI+RS A + R S + Sbjct: 7 FQKIHQLLERRQTDLTLVMDNVNKPHNLAAIIRSCDAVGIHQVHAISRRSSI-RTKQHTA 65 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 A + + S + + + + A+++G E G Sbjct: 66 AGASRWVKVGLSDSIVPVGEKIREAGMQILVATYRPDAVDFRSIDYTRPTAIVMGEELTG 125 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + A ++ M G++++LNVS AAA+ L+ Q Sbjct: 126 PSEEAMNLADHFVYIPMFGMVESLNVSVAAALILFEAQRQRK 167 >gi|182413334|ref|YP_001818400.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] gi|177840548|gb|ACB74800.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] Length = 262 Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 83/250 (33%), Gaps = 11/250 (4%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-- 85 + ++++S +K +H + G V+ L DA Sbjct: 5 AEIQRLRSLREK-KHRETLGLFVIEGEKVVAELLAVGFPFEEIFATHAWNRPGPAEDATP 63 Query: 86 --NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + + +I A+ DA+ L + LD V D Sbjct: 64 SPLRDARPRIVRLDAADMARISHFPTPSSVFAVGRLQRQPLPPDALN-HGLTLALDGVQD 122 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G +LR A F+ D ++ + + + ++ G+ + + T Sbjct: 123 AGNVGTLLRIADWFALDRVLLSPDCADVFHQKVINASMGSFARVQVHSVELPTALAGVRV 182 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + P + +++G+EG+GL P E + + G ++L Sbjct: 183 PVLGCDLTGENVHALPPLAD-----AVIVIGSEGRGLSPAVAELVSRRVTIPRYGQAESL 237 Query: 264 NVSNAAAVAL 273 N + AAA+ Sbjct: 238 NAAIAAAIVC 247 >gi|282854676|ref|ZP_06264011.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139] gi|282582258|gb|EFB87640.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139] gi|314981978|gb|EFT26071.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL110PA3] gi|315090889|gb|EFT62865.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL110PA4] Length = 277 Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 88/243 (36%), Gaps = 9/243 (3%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY ++ N + ++ G + A LLA + D L Sbjct: 16 ADYVSLRDVNLRKSLEAEHGLFIAEGAKVIRRACEAGYPPRSFLLAPRWIDGLRDLFDGL 75 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V V +T+ + V VH+G + + ++ L+V + + D N+ Sbjct: 76 --DVEVFVVS-ETLAEQVTGFQVHRGALASMCRQTRWSAADLMAARRLVVCEDIVDHTNV 132 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQK 201 GAI+R A DG++ R + K++ G + +P+ R+ + Sbjct: 133 GAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLDELRDHGF 192 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + S + + K+AL++G EG GL A + + M G + Sbjct: 193 TVAAMALSGDSLSLDEFSADLRQNPRKVALLMGTEGTGLSAHWISQADVVVRIPMAGGVD 252 Query: 262 ALN 264 +LN Sbjct: 253 SLN 255 >gi|291300541|ref|YP_003511819.1| tRNA/rRNA methyltransferase SpoU [Stackebrandtia nassauensis DSM 44728] gi|290569761|gb|ADD42726.1| tRNA/rRNA methyltransferase (SpoU) [Stackebrandtia nassauensis DSM 44728] Length = 236 Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 12/234 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108 G V+ A+ + ++ AT+ AL+R V V + + Sbjct: 2 AEGPQAVAEAVRAGG--VTEVFATEAALSRHTGLLAEAESFGARVFAVADSGLAALTDTV 59 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 A +L +VLD + DP N G ILR+A A ++ Sbjct: 60 HPQG----IVAVCGYVDTTLPETVRLAVVLDGIADPGNAGTILRTADAAGAQAVVFPHGS 115 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---- 224 + +++ G+L H+P +R + + L + + G + + + L+ I Sbjct: 116 VDPYNGKCVRASVGSLFHLPVVRGGDTDEHLDALRAKGLRILAADVRGETDLDAAIDDGL 175 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + G+E GL E A + + G ++LN++ AAAV LY + Sbjct: 176 LRQPTAWLFGSEAHGLSDALTERADVRVRVPIYGAAESLNLATAAAVCLYASAR 229 >gi|15806040|ref|NP_294741.1| rRNA methylase [Deinococcus radiodurans R1] gi|6458745|gb|AAF10591.1|AE001953_5 rRNA methylase [Deinococcus radiodurans R1] Length = 265 Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 94/234 (40%), Gaps = 6/234 (2%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + + G + A + + +L + + P + +K+ G Sbjct: 33 GVMLIEGARELMRA-ESAGVTVPELFVCPELFSPEAREL-FPEVTGATELSRAAFEKVSG 90 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 +E L APL +P L + +++VL + P N+GAILR+A A G++ Sbjct: 91 RENP--DGVLGVAPLPAPRLPQPGDDTVVVVLHGLEKPGNVGAILRTADAAGAAGVLVLG 148 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R + + +++ GA+ + AL + F+T+ + D+ Sbjct: 149 RGADPYGPNVIRASQGAVF-SVPTAVLGEDAALGWLAEHNFRTVACTPDAPADYWDTPLT 207 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++AL+LG E GL + + A + M G +LNV+ AAA+ LY Sbjct: 208 GRVALLLGTEHAGLPAEWRA-AHQAVRVPMHGQADSLNVATAAALVLYEALRQR 260 >gi|296454038|ref|YP_003661181.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp. longum JDM301] gi|296183469|gb|ADH00351.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. longum JDM301] Length = 292 Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 98/276 (35%), Gaps = 28/276 (10%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP 88 Y + ++R + AL + L+ + +D Sbjct: 17 YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAADREPLSLLVEEPWLEGMKDTFDFIDG 76 Query: 89 H---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV P+ + ++ G L LL + R+++ + V++++ D Sbjct: 77 RWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWLLPSVAEVCRSARRVAVMENIVDHT 136 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA++RSA A D ++ T A+ + G + IP+ RI+ D + + Sbjct: 137 NVGALMRSAAALDVDAVLATPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKHY 196 Query: 206 GFQT------------------------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 L+ P E DK+A+I G EG GL Sbjct: 197 WPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLAMIFGTEGDGLS 256 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 T A + M + +LNV+ ++AVA Y T+ Sbjct: 257 HHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292 >gi|126437415|ref|YP_001073106.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] gi|126237215|gb|ABO00616.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] Length = 270 Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 103/254 (40%), Gaps = 6/254 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ S + GV V + + LL T L L D + Sbjct: 17 DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMVASRFTP-RALLGTDRRLTELGTDLD-A 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + + ++VG LA + P DA+ ++ + VL+ VND N+G Sbjct: 75 VDAPFYRADAEVMAEVVGFHLNRGVLASASRPPEISVADALDGARAVAVLEGVNDHENLG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +I R+A D +I + + + G +P+ R + D L + GFQ Sbjct: 135 SIFRNAAGLGVDAVIFGAGCADPLYRRAVRVSMGHALMVPFARAATWPDELNTLRDKGFQ 194 Query: 209 TIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + ++ D + +K+A ++GAEG GL + + + M +LN Sbjct: 195 LLAMTPDPAADTLATAMTALAGEKVAFLVGAEGPGLTERVMRASDRRVRIPMSRGTDSLN 254 Query: 265 VSNAAAVALYITQN 278 V+ AAA+A Y Sbjct: 255 VATAAALAFYERVR 268 >gi|319779560|ref|YP_004130473.1| RNA methyltransferase, TrmH family [Taylorella equigenitalis MCE9] gi|317109584|gb|ADU92330.1| RNA methyltransferase, TrmH family [Taylorella equigenitalis MCE9] Length = 259 Score = 99.5 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 55/280 (19%), Positives = 102/280 (36%), Gaps = 26/280 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K+ + YK ++ ++ T L G H V Sbjct: 1 MEIITSKE------------------NLYYKNLKKALSNNKCT----QTVLEGPHLVKQW 38 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L++ + F L + + V + K + + +QG+ L Sbjct: 39 LDSG--RAFNKFVMSETLYNKGGNDFEGYTISNPIVLSDNLFKSLSEVVTNQGILLLIDI 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 ++ + +++LD + DP N+G +LR+ VA + K S + S+ + +SA Sbjct: 97 PTY-NINNLSMQNTIVLLDSIQDPGNLGTLLRTCVAVGISDVALNKGCSSAWSSKVLRSA 155 Query: 181 SGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 G+ + +L ++ S K L + N KIA I G EG G Sbjct: 156 QGSHAFLKIYHHVDLIGLIEILQAGGYEIIATALDLSSKNLFELNLNKKIAWIFGNEGNG 215 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + + I++LNV AA++ LY Sbjct: 216 VSSEILSLGLEKCIIPINQNIESLNVGVAASICLYEQYRQ 255 >gi|283786196|ref|YP_003366061.1| RNA methyltransferase [Citrobacter rodentium ICC168] gi|282949650|emb|CBG89269.1| putative RNA methyltransferase [Citrobacter rodentium ICC168] Length = 345 Score = 99.5 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ ++ + ++ L+++ +PHN+G ++RS Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTSVKQWVGNAQAQDCVLALENIANPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I ++ + L G+ + S D Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDSIVNVLDDFRQAGYTVVTTSGD 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL +K+ L+LG E GL ++ + G +++LNVS + L Sbjct: 279 RGKPLFATALPEKMVLVLGQEADGLPDAARDPDDLCVKIDGTGNVESLNVSVVTGILLAE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|13357887|ref|NP_078161.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|167971835|ref|ZP_02554112.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|168282544|ref|ZP_02690211.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|168308698|ref|ZP_02691373.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|170762188|ref|YP_001752409.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|11357051|pir||C82904 rRNA methylase UU327 [imported] - Ureaplasma urealyticum gi|6899305|gb|AAF30736.1|AE002130_3 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827765|gb|ACA33027.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902435|gb|EDT48724.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675668|gb|EDT87573.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701207|gb|EDU19489.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 257 Score = 99.5 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 91/280 (32%), Gaps = 26/280 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 + +I+ K+E+I ++ + + G + A Sbjct: 2 LKIITSNKNEEIIH------------------FYRLIHDKKYREANKLFIIEGFKLLDEA 43 Query: 61 LNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L N + ++ N + L + V I K+ LA+ Sbjct: 44 LQNQQTIVSIIINEHVYNKEFETIFKYTLYDNIQIYKVSGNIIKKLSVNIEPSPILAVVK 103 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 ++ +++LD++ DP N+G ILR+ AF+ +I + Sbjct: 104 IKQEMCDINDN-----ILLLDNIQDPGNLGTILRTCFAFNIKQVIFNNCVDLYNPKTIKA 158 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 S + + + + + + + L + K L++G EG Sbjct: 159 SMGAIFKINFLRFNDSKLALNFLLKNKFYLIATILDKNAISLNEITIKQKYCLMVGNEGH 218 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 GL + A + M ++LNV+ AAA+ LY Sbjct: 219 GLVQTFIDHAHIKTMIKMN-QTESLNVAVAAAIFLYELNK 257 >gi|213163301|ref|ZP_03349011.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 124 Score = 99.5 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 41/83 (49%) Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ + +G + ++ L Q ++AL++GAEG+G+R T+E + + M G Sbjct: 42 MRMLQEENIWIVGTAGEADHTLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAG 101 Query: 259 IIKALNVSNAAAVALYITQNHFA 281 + +LNVS A + L+ Sbjct: 102 SVSSLNVSVATGICLFEAVRQRT 124 >gi|330886610|gb|EGH20271.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020] Length = 75 Score = 99.5 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 7 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 66 Query: 281 A 281 + Sbjct: 67 S 67 >gi|289672601|ref|ZP_06493491.1| RNA methyltransferase [Pseudomonas syringae pv. syringae FF5] Length = 129 Score = 99.5 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 61 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 120 Query: 281 A 281 + Sbjct: 121 S 121 >gi|257482400|ref|ZP_05636441.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 138 Score = 99.5 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q+ +I+GAEGKG+R T+E + L M G + +LNVS A V L+ Sbjct: 70 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 129 Query: 281 A 281 + Sbjct: 130 S 130 >gi|119357014|ref|YP_911658.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides DSM 266] gi|119354363|gb|ABL65234.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides DSM 266] Length = 224 Score = 99.5 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 55/153 (35%), Gaps = 1/153 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L +V+D+VN HN+ AI+RS A I A A Sbjct: 4 HRQPDLSLVMDNVNKAHNLSAIIRSCDAVGIHEIHAVSYRKNIFDRQTAA-AGTTRWVEV 62 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + S + S ALILGAE G+ + E A Sbjct: 63 TLHQSITSGLSMIAGRGMQILAASGSSKNVDFRSIDYTRPTALILGAEWDGVSTEALEAA 122 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G+I++LNVS AAAV L+ + Sbjct: 123 DHHISIPMHGMIESLNVSVAAAVILFEAERQRT 155 >gi|298252979|ref|ZP_06976771.1| rRNA methylase [Gardnerella vaginalis 5-1] gi|297532374|gb|EFH71260.1| rRNA methylase [Gardnerella vaginalis 5-1] Length = 313 Score = 99.5 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 70/303 (23%), Positives = 126/303 (41%), Gaps = 31/303 (10%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS-RHTSQPENLFLYGVHTVSAALNN 63 + K ++++ +++AK R + + ++ + + G + AL Sbjct: 7 TPKAEDRVYH--KAYFAKKAAIKRTFADPRLAARRRVDKLGSDSDELVIGRNAALEALRV 64 Query: 64 PSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 QL + R + +D+I HQG+ ++ Sbjct: 65 G-VPSTQLYVANRIEHDDRTREIVKLAGMQGLRLLEADRLEMDRIA-HSTNHQGIIVKVQ 122 Query: 120 PLLSPTLD---------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 P +L + L + LD V DP N+GA++RSA AF Sbjct: 123 PYQYHSLQELVERAEKKARAMEAADSDSARINARPLFIALDGVTDPQNLGAVIRSAAAFG 182 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +G+I +R S S +A K ++GA H+P R+ NL A+Q + G+ IGL K Sbjct: 183 ANGVILPERRSASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDK 242 Query: 219 PLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + D + ++LG+EGKG+ T+E ++A + + +++LN S AA ++LY Sbjct: 243 LVGETGFETDPLVVVLGSEGKGMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVA 302 Query: 278 NHF 280 N Sbjct: 303 NAR 305 >gi|283783774|ref|YP_003374528.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis 409-05] gi|283441096|gb|ADB13562.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis 409-05] Length = 331 Score = 99.5 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 70/303 (23%), Positives = 126/303 (41%), Gaps = 31/303 (10%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS-RHTSQPENLFLYGVHTVSAALNN 63 + K ++++ +++AK R + + ++ + + G + AL Sbjct: 25 TPKAEDRVYH--KAYFAKKAAIKRTFADPRLAARRRVDKLGSDSDELVIGRNAALEALRV 82 Query: 64 PSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 QL + R + +D+I HQG+ ++ Sbjct: 83 G-VPSTQLYVANRIEHDDRTREIVKLAGMQGLRLLEADRLEMDRIA-HSTNHQGIIVKVQ 140 Query: 120 PLLSPTLD---------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 P +L + L + LD V DP N+GA++RSA AF Sbjct: 141 PYQYHSLQELVERAEKKARAMEAADSDSARINARPLFIALDGVTDPQNLGAVIRSAAAFG 200 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +G+I +R S S +A K ++GA H+P R+ NL A+Q + G+ IGL K Sbjct: 201 ANGVILPERRSASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDK 260 Query: 219 PLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + D + ++LG+EGKG+ T+E ++A + + +++LN S AA ++LY Sbjct: 261 LVGETGFETDPLVVVLGSEGKGMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVA 320 Query: 278 NHF 280 N Sbjct: 321 NAR 323 >gi|238912713|ref|ZP_04656550.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 345 Score = 99.5 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 93/244 (38%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ + ++ L+ V +PHN+G ++RS Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I ++ D L G+ + SSD Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L +K+ L+LG E L +E + ++ G +++LNVS A V L Sbjct: 279 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPSDLCVKINGTGNVESLNVSVATGVLLAE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|90416529|ref|ZP_01224460.1| putative rRNA methylase [marine gamma proteobacterium HTCC2207] gi|90331728|gb|EAS46956.1| putative rRNA methylase [marine gamma proteobacterium HTCC2207] Length = 258 Score = 99.5 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 97/249 (38%), Gaps = 13/249 (5%) Query: 36 FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL----ARLDWDANLPHPF 91 +KS + + +YG V L + S +IF+L + Sbjct: 10 LARKSAYDR---LITVYGRKPVYEILADRSLEIFRLHLADSNRGGGIVEQIKSLAAQRNI 66 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPH 145 + + + +I QG+A + + + L+ LD + +P Sbjct: 67 EICYHSREQLARISRNSKQDQGVACDIHSAGYQPYKKALEKLPSADQRPLIALDGITNPQ 126 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+RS A G++ + SA++ K+++G + +R +L AL Sbjct: 127 NLGMIIRSITASPAYGLLLPSKGCADISALVIKASAGTVFKGNILRCESLAKALPAFIEK 186 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF+ LSS PL + I +LG E +G+ + + + M +++LNV Sbjct: 187 GFEVCTLSSHQATPLAEFKPQAPIIYVLGNETEGVSKEIAALSKHRVGIPMANGVESLNV 246 Query: 266 SNAAAVALY 274 + AA+ + Sbjct: 247 AITAALIAF 255 >gi|116493236|ref|YP_804971.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745] gi|116103386|gb|ABJ68529.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745] Length = 252 Score = 99.5 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 11/244 (4%) Query: 46 PENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + F+ G H A+L + K+F K+ ++ V +D Sbjct: 8 QQPDFVIGRHPAMASLQSDHSINKVFIQEGLKSDGIGQIIAKAKKQGLVIQRVTKSKLDT 67 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + HQG+ L A LD +++LD + DPHN+G+ILR+A A Sbjct: 68 LSNGQ-NHQGVVLAVASFEYAELDDIFKLAKAREEEPFILILDGIEDPHNLGSILRTADA 126 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I KR + ++ +AK+++GA+E +P +++SNL +A++++ G G Sbjct: 127 AGVHGVIIPKRRAVGLTSTVAKTSAGAIERVPVVQVSNLVNAIKELKERGLWIFGTDMKG 186 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + K + LI+G EGKG+ T++ M + M G I++LN S AA + +Y Sbjct: 187 TDYRRWDAK-GAVGLIIGNEGKGMARLTKDNVDEMLTIPMVGEIQSLNASVAAGLLIYQG 245 Query: 277 QNHF 280 N Sbjct: 246 YNSR 249 >gi|254225060|ref|ZP_04918674.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51] gi|125622447|gb|EAZ50767.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51] Length = 257 Score = 99.5 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N + K+ + AT LA Sbjct: 21 KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEHAQALA---G 75 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K+ + + +A+ P ++ + L++ LD V+DP N+G I Sbjct: 76 FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 131 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II ++ + + + G+ + ++ + + Sbjct: 132 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPYYLAKANLPVYGAFL 191 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S + + L++G+E G+R + + T + G ++LNV+ A Sbjct: 192 EGVSVHQ-----TAFKAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 246 Query: 271 VALYITQNH 279 + L + Sbjct: 247 IILDNIRRQ 255 >gi|170692157|ref|ZP_02883320.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia graminis C4D1M] gi|170142587|gb|EDT10752.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia graminis C4D1M] Length = 262 Score = 99.1 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 108/261 (41%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + + L G H SA L+ + + T+ AL Sbjct: 2 KAITSRDNPLYKRLKALAGSTHQQRRSGHALLEGFHLASAYLDVAGQPEMCI-VTEGALR 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G+ L L +P D V + +++ Sbjct: 61 HDEAQAIVSRIDEQRIVTLPDALFGQLSNVVHGVGMLLLVEKLDTPLPDTVAQTCIVL-- 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +S GA + Sbjct: 119 DGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDVEAQTL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++++ T +++ + + ++A + G EG G+ ++ T + PG Sbjct: 179 IERLAVPVVITDSHGAEAIYDCD---LSAELAWVFGNEGAGVSQAWRDAVTLRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV ++ Sbjct: 236 GMESLNVAAAAAVCVFEQCRQ 256 >gi|297243268|ref|ZP_06927203.1| rRNA methylase [Gardnerella vaginalis AMD] gi|296888802|gb|EFH27539.1| rRNA methylase [Gardnerella vaginalis AMD] Length = 332 Score = 99.1 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 31/303 (10%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS-RHTSQPENLFLYGVHTVSAALNN 63 + K ++++ +++AK R + + ++ + + G + AL Sbjct: 25 TPKAEDRVYH--KAYFAKKAAIKRTFADPRLAARRRVDKLGSDSDELVIGRNAALEALRV 82 Query: 64 PSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 QL + R + +D+I HQG+ L+ Sbjct: 83 G-VPSTQLYVANRIEHDDRTREIVKLAGMQGLRLLEADRLEMDRIA-HSTNHQGIILKVQ 140 Query: 120 PLLSPTLD---------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 P +L + L + LD V DP N+GA++RSA AF Sbjct: 141 PYQYHSLQELVERAEKKARAMEAADSDSARINARPLFIALDGVTDPQNLGAVIRSAAAFG 200 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +G+I +R S S +A K ++GA H+P R+ NL A+Q + G+ IGL K Sbjct: 201 ANGVILPERRSASVTAAAWKVSAGAAAHLPVARVVNLNKAIQSLRERGWYAIGLDGGGDK 260 Query: 219 PLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + D + ++LG+EGKG+ T+E ++A + + +++LN S AA ++LY Sbjct: 261 LVGETGFETDPLVVVLGSEGKGMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVA 320 Query: 278 NHF 280 N Sbjct: 321 NAR 323 >gi|225352209|ref|ZP_03743232.1| hypothetical protein BIFPSEUDO_03825 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157456|gb|EEG70795.1| hypothetical protein BIFPSEUDO_03825 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 290 Score = 99.1 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 87/269 (32%), Gaps = 22/269 (8%) Query: 27 HRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 + ++++ ++ + + + G +V L + L + Sbjct: 10 NPKSERVRRVSELADRKGRKRSGRFMVEGPQSVRELLTWHPGLVEDLYVEVESAQPDASF 69 Query: 85 A----------NLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQ 133 A + V V + ++ + V ++ S D Sbjct: 70 ATPVVAQMAGKAMQSGVYVHKVTHAVMHRMSADAQGVLAVADMQAFLDSSAAPDDFDEHA 129 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH------- 186 ++ V DP N G ++RSA A C ++ + + +S G+L H Sbjct: 130 MVAAFWQVRDPGNAGTVIRSADAAGCSAVVLVDDCVDVFNPKVIRSTVGSLFHLPILTMG 189 Query: 187 --IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + A+ +G + S + E A++ G E +GL + Sbjct: 190 TDDFFAWCDTHELAVYAADVYGTDSRQPESLTDVIAAPETLAGAKAVLFGNEARGLTKEV 249 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273 E + + + G ++LN+ ++AV L Sbjct: 250 LERTDRIVSIPLYGKAESLNLGTSSAVML 278 >gi|85708105|ref|ZP_01039171.1| rRNA methylase [Erythrobacter sp. NAP1] gi|85689639|gb|EAQ29642.1| rRNA methylase [Erythrobacter sp. NAP1] Length = 265 Score = 99.1 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 141/247 (57%), Gaps = 10/247 (4%) Query: 29 DYKKMQSFNQKSRHTSQPEN-----LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 K ++ + + + L+G H V AAL NP+R+ +L AT+ + LD Sbjct: 6 RKKALRGRAGRMKGGRGSGKGTAGHVRLWGRHPVEAALKNPARQHRKLWATREGIDSLDG 65 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLDH 140 + LP F V+ + ++V K+A HQGL LE PL LD ++ ++VLD Sbjct: 66 E--LPPDFAVEYAEVTDLARLVAKDAPHQGLVLECEPLEDVFLDDVANGDPARPVVVLDQ 123 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DPHN+GAILRSA AF I+T R++P E VLAKSASGALE +P++R+ NL AL Sbjct: 124 VTDPHNVGAILRSAAAFGAACIVTQDRHAPPEGGVLAKSASGALETVPWVRVVNLARALD 183 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 ++ G+ IGL+ +++ L + +AL+LGAEG+G+R + ++A L + I Sbjct: 184 ELADLGYWRIGLAGEAEATLSGSLTTGALALVLGAEGEGMRHNIAQHCDTLAKLPITSAI 243 Query: 261 KALNVSN 267 ++LNVSN Sbjct: 244 ESLNVSN 250 >gi|229513059|ref|ZP_04402525.1| RNA methyltransferase TrmH family [Vibrio cholerae TMA 21] gi|229349952|gb|EEO14906.1| RNA methyltransferase TrmH family [Vibrio cholerae TMA 21] Length = 244 Score = 99.1 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 91/251 (36%), Gaps = 14/251 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N + K+ + AT LA Sbjct: 8 KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEHAQALA---G 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K+ + + +A+ P ++ + L++ LD V+DP N+G I Sbjct: 63 FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II ++ + + + G+ + ++ + + Sbjct: 119 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S + + L++G+E G+R + + T + G ++LNV+ A Sbjct: 179 EGVSVHQ-----TAFQAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNHFA 281 + L + Sbjct: 234 IILDNIRRQHN 244 >gi|110597515|ref|ZP_01385801.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium ferrooxidans DSM 13031] gi|110340834|gb|EAT59308.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium ferrooxidans DSM 13031] Length = 215 Score = 99.1 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 1/153 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L +V+D+VN HN+ AI+RS + Y S +A + Sbjct: 16 HRQPDLTVVMDNVNKAHNLSAIIRSCDTVGIGELHAVS-YRKSIYTEQDAAAGASKWTTL 74 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ T + + SS AL++GAE G+ A Sbjct: 75 HLYHEMATVYKKLSDQNMQILVASSSAGCMDFRNIDYTMPTALVVGAEWDGISEAALHGA 134 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G++++LNVS A A+ L+ Q + Sbjct: 135 DQTIAIPMFGMVESLNVSVATALILFEAQRQRS 167 >gi|326335202|ref|ZP_08201398.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692610|gb|EGD34553.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 242 Score = 99.1 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 88/235 (37%), Gaps = 20/235 (8%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + ++ + G ++ L K + AT L P+ V P+ + Sbjct: 18 YRNELGLFVVEGKKSIIEFLKAGY-KAKAIYATNAFSPHLV-------GHPLILVSPEEL 69 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++ + +G A + L++ LD+V DP N+G ++R F + Sbjct: 70 QRLSTLKHPDEG----VAIFQQHERKEILQEGLILALDNVQDPGNLGTLIRLCDWFGIET 125 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +++ + + +++ G+L + + + + + +++ + L Sbjct: 126 LLCSEQTVDCYNPKVVQASMGSLSRVEVHYLPL-----EGFLATCALPVYVANLEGENLY 180 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSNAAAVAL 273 + ++LG E G+ P+ A + G ++LNV+ A + + Sbjct: 181 TTTFPEDCVIVLGNEANGVSPEVAALANGAITIPRFGKLQQAESLNVAMAGGIII 235 >gi|291538217|emb|CBL11328.1| rRNA methylases [Roseburia intestinalis XB6B4] Length = 296 Score = 99.1 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 93/261 (35%), Gaps = 26/261 (9%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-------------- 87 +P + AL+ + L+ K+ + Sbjct: 30 FEPKPGIFIAESPKVIERALDAGCVPMSFLMEKKHVETQAKEILARCDKLQSRDLTQESL 89 Query: 88 -----PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 H PV + + KI G + L P LS +N++ + +L++V Sbjct: 90 VYREDEHVIPVYVAEVEMLAKITGYQLTRGMLCAMYRPALSSVEQLCKNARRVAILENVV 149 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 +P N+GAI RSA A D ++ T+ + ++ + G + IP+ Sbjct: 150 NPTNVGAIFRSAAALGMDAVLLTQACADPLYRRASRVSMGTVFQIPWTYFDKSASWPDGA 209 Query: 203 HSWGFQTIGLSSDS-------KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + ++ E+ + +K+A++LG EG GL T + Sbjct: 210 MDVLHKLGYKTAAMALRDDSVCIDDEKMMSEEKLAIVLGTEGDGLADHTIADCDYTVKIP 269 Query: 256 MPGIIKALNVSNAAAVALYIT 276 M + +LNV+ A+AVA + Sbjct: 270 MTHGVDSLNVAAASAVAFWQL 290 >gi|296158889|ref|ZP_06841717.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. Ch1-1] gi|295890764|gb|EFG70554.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. Ch1-1] Length = 261 Score = 99.1 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 107/261 (40%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + + L G H SA L+ + + T AL Sbjct: 2 KAITSRDNPLYKRLKALAGSTHQQRKSGHALLEGFHLASAYLDVAGQPEMCI-VTDGALR 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G+ L L +P D V + L++ Sbjct: 61 HDEAQAIVSRIEDHRLVTLPDALFGQLSNVVHGVGILLLVEKLDTPLPDEVAQTCLVL-- 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +S GA + Sbjct: 119 DGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDVEAQAL 178 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++++ + T +++ + + +A + G EG G+ ++ + + PG Sbjct: 179 IERLAAPIVITDSHGAEAIYDCD---LSGPLAWVFGNEGAGVSQIWRDAVSLRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV ++ Sbjct: 236 GMESLNVAAAAAVCVFEQCRQ 256 >gi|283769024|ref|ZP_06341930.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219] gi|283104381|gb|EFC05758.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219] Length = 235 Score = 99.1 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 106/274 (38%), Gaps = 43/274 (15%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ K+ + K R +HR + H + A Sbjct: 2 MESITSLQNRKVKIWTSLQHKKGRDSHR-------------------LFLVETEHLIEEA 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + A ++ V + + + + +H+ + Sbjct: 43 --------------QKAQILQTIISDQKGDILVTEAILKKLK--ISQSTIHRIGLCQMPH 86 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + +++LD + DP N+G I+R+A +F + + ++ + + +++ Sbjct: 87 FEKKEVKK------VILLDEIQDPGNLGTIIRTAKSFGYEAVYCSENCCDAFNPKCVQAS 140 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GA+ + +L + + + G + +G S PL++ K D IA++LG EG+G+ Sbjct: 141 QGAIF-SIPVFREDLKNVISSLQERGIKVLGTSLQQSIPLKKVKKEDDIAILLGNEGQGV 199 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + E + + M G ++LNV+ A A+ +Y Sbjct: 200 KGNLLELCDEITRIEMSG-FESLNVAVAGAILMY 232 >gi|295676810|ref|YP_003605334.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1002] gi|295436653|gb|ADG15823.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1002] Length = 262 Score = 99.1 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 103/261 (39%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + + L G H SA L+ + + T AL Sbjct: 2 KAITSRDNPLYKRLKALAGSTHQQRRSGHALLEGFHLASAYLDVAGQPELCV-VTDGALR 60 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G+ L L +P + V + L++ Sbjct: 61 HEEAQAIVSRIDEHRLVTLPDALFGQLSNVVHGVGILLLVEKLDAPPPERVEQNCLVL-- 118 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + + S+ + +S GA + + Sbjct: 119 DGVQDAGNVGSILRSAAAAGIEHVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDVDA--- 175 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + S + + + +A + G EG G+ ++ + + PG Sbjct: 176 SALIERLAVPIAITDSHGAEAIYDCDLSRPLAWVFGNEGAGVSQVWRDAVSLRVTIPQPG 235 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV ++ Sbjct: 236 GMESLNVAAAAAVCVFEQCRQ 256 >gi|237785055|ref|YP_002905760.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] gi|237757967|gb|ACR17217.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] Length = 325 Score = 99.1 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 57/301 (18%), Positives = 105/301 (34%), Gaps = 42/301 (13%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 I ++ ++ +++ R + K + G+ V + Sbjct: 18 YIEDPSDPRLDDFRNLNHSDKRPDMPGGK---------------GLVIAEGLLVVPRLIR 62 Query: 63 NPSRKIFQLLATKNALARLDWDANLP-----HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 + + ++ T+ L L DA+L PV V + + +IVG + +H+GL Sbjct: 63 S-RFPVRAIMGTEAKLHSLLDDADLAATLAQANIPVWCVSREVMAEIVGFD-MHRGLLAS 120 Query: 118 TAPLLSPTL--------------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + P++ D S + VL+ V D NIGA+ R+A D + Sbjct: 121 ANRVDVPSISDVLDELDARRDRPDQPPVSGTIAVLEGVGDHENIGALFRNAAGLGVDAVF 180 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + + + + G + +P+ Q+ S Q + Sbjct: 181 FGAGCADPLYRRVVRVSMGHVLRVPFAYFDGNRSTWQRGLSELQQRGYRCVALTPSDDAV 240 Query: 224 IKN------DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + ALI+GAEG GL + A + M +LNV+ AAA+ Y Sbjct: 241 MLPEALDGAQRAALIVGAEGPGLTEHAMRASDVRARIPMAPGTDSLNVATAAAMGFYERA 300 Query: 278 N 278 Sbjct: 301 R 301 >gi|284045070|ref|YP_003395410.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684] gi|283949291|gb|ADB52035.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684] Length = 245 Score = 99.1 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 82/255 (32%), Gaps = 27/255 (10%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++ K+++ +K R + G ++AA R + + Sbjct: 6 SPHNERLKELRRLARK-RGRDESGRFVAEGEDLLAAADEAGWRPVERYC----------- 53 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 P V + + G + L + L + D Sbjct: 54 --AAGSGLPGTEVEADVLAHVS-----QLGSGTRALAVYEQRWADAPAGPLCVYLHGIAD 106 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LRSA+AF + + +++ GA+ L A + Sbjct: 107 PGNVGTVLRSALAFGAASVALGPGCADPFGPKAVRASMGAVF------QVPLARASGDVA 160 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + TI L + + + L++GAE GL E A + + ++L Sbjct: 161 ALPGTTIALDAHAGSGPLHGPLGEPATLLIGAERAGLPEALLEACDRTARIPIRS--ESL 218 Query: 264 NVSNAAAVALYITQN 278 N + AA +ALY Sbjct: 219 NAAMAATIALYEATR 233 >gi|269217458|ref|ZP_06161312.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral taxon 848 str. F0332] gi|269213079|gb|EEZ79419.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral taxon 848 str. F0332] Length = 326 Score = 99.1 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 74/297 (24%), Positives = 135/297 (45%), Gaps = 24/297 (8%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ----PENLFLYGVHTVSAA 60 + K ++++ +H KL ++ + +R + P + + G + V A Sbjct: 33 TPKAEDRVYHP--AHKRKLAAE-AARREQARLEKANRLRPELSLAPGHELIAGRNAVLEA 89 Query: 61 LNNPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 + + + ++ + + P+ +D++ AVHQG+A+ Sbjct: 90 VRSGI-PLSRVFVSGGVASDERLGEVVRTATALGAPLFEASRTELDRMTD-GAVHQGVAI 147 Query: 117 ETAPLLSPTLD----------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 E P ++ L++ LD V DPHN+GA++RSA AF DG++ + Sbjct: 148 EVPPYEYADVEDLVERAGKGARAGRPGLVVALDSVTDPHNLGAVMRSASAFGADGVVVPE 207 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R S +A + K ++GA +P R+ NL AL K+ + G+ +GL +E Sbjct: 208 RRSAGVNATVWKVSAGAAARVPAARVPNLVAALGKLKTRGYFAVGLDGRGDTAIEDISFA 267 Query: 227 D-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 D I L+ G+EGKGL T+ET ++A + + +++LNV+ A +ALY A+ Sbjct: 268 DAPIVLVTGSEGKGLARLTRETCDAIASVPIAAELESLNVAVATGIALYQIDRLRAR 324 >gi|15608021|ref|NP_215396.1| rRNA methyltransferase [Mycobacterium tuberculosis H37Rv] gi|148660658|ref|YP_001282181.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|167968352|ref|ZP_02550629.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|307083402|ref|ZP_07492515.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu012] gi|1731374|sp|Q10543|Y881_MYCTU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Rv0881/MT0904 gi|1314020|emb|CAA97388.1| POSSIBLE RRNA METHYLTRANSFERASE (RRNA METHYLASE) [Mycobacterium tuberculosis H37Rv] gi|148504810|gb|ABQ72619.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|308366818|gb|EFP55669.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu012] Length = 288 Score = 99.1 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 99/254 (38%), Gaps = 6/254 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ + + GV V L + + L T LA L D Sbjct: 28 DFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPL-ALFGTDRRLAELKDDLA-G 85 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + +++G LA V ++ + VL+ VND N+G Sbjct: 86 VGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAVLEGVNDHENLG 145 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +I R+A S D ++ + + + G +PY R ++ L + GF+ Sbjct: 146 SIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFR 205 Query: 209 TIGLSSDSKKPLEQ----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + ++ + +++IAL++GAEG GL + + M +LN Sbjct: 206 LLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLN 265 Query: 265 VSNAAAVALYITQN 278 V+ AAA+A Y Sbjct: 266 VATAAALAFYERTR 279 >gi|256824064|ref|YP_003148024.1| rRNA methylase [Kytococcus sedentarius DSM 20547] gi|256687457|gb|ACV05259.1| rRNA methylase [Kytococcus sedentarius DSM 20547] Length = 271 Score = 99.1 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 48/263 (18%), Positives = 88/263 (33%), Gaps = 9/263 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-----AL 78 + K ++ + R + + G + AL R +L + A Sbjct: 10 SPANPRIKALRELRR-RRAREATGSTLVEGYEELQIALAGGVRP-RELYLCEELMADPAA 67 Query: 79 ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMV 137 + + + T+ +K +E + T + L L +V Sbjct: 68 QQDVVELASQRGAGIVTLSRAVFEKAAYREGPDGFLAVVPTPGVALADLPQPDGPGLYVV 127 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 +H+ P N+GAILR+A A D +I S + + + Sbjct: 128 AEHLEKPGNLGAILRTADAAGVDAVIA-ADPVTDWGNPNVVRGSKGTVFSVPVATAPTPE 186 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 L + G + + ++ Q +A+ +GAE GL E AT + M Sbjct: 187 VLDFLAGRGMTLVATTPHTEVLHTQVDLTGPVAIAVGAEKTGLTASALEGATHRVRIPMV 246 Query: 258 GIIKALNVSNAAAVALYITQNHF 280 G +LNV+ +AA+ +Y Sbjct: 247 GRANSLNVATSAAIVVYEAVRQR 269 >gi|227496369|ref|ZP_03926659.1| tRNA/rRNA methyltransferase [Actinomyces urogenitalis DSM 15434] gi|226834096|gb|EEH66479.1| tRNA/rRNA methyltransferase [Actinomyces urogenitalis DSM 15434] Length = 330 Score = 99.1 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 69/264 (26%), Positives = 116/264 (43%), Gaps = 16/264 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDAN 86 K+++ + R + G + V+ A I ++ + + RL Sbjct: 65 RTKQLEKI--RRRFDVPEGYEIVCGRNAVAEAARAG-VPISRVFMAVSAESDDRLGAVVR 121 Query: 87 LPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMV 137 PV ++ + AVHQG+A+E + AV ++ LL+ Sbjct: 122 RATLIGCPVLETTKLDLEALTD-GAVHQGVAIEVPAYGYTSALDLLDRARAVGHTPLLVA 180 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD V DPHN+GA+LRS AF DG+I +R S +A + K ++GA +P R +NL Sbjct: 181 LDQVTDPHNLGAVLRSTGAFGGDGVIIPERRSVGVNATVWKVSAGAAARVPVARETNLVR 240 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHM 256 L+ + G +GL + +E D + L+ GAEG GL +ET +A + + Sbjct: 241 TLETLKKEGCFVVGLDGGGETLMEDLSLADSPLVLVTGAEGAGLSRLVRETCDVIASIPI 300 Query: 257 PGIIKALNVSNAAAVALYITQNHF 280 +++LN + A ++LY Sbjct: 301 SQTVESLNAAVATGISLYEVDRLR 324 >gi|302380365|ref|ZP_07268835.1| RNA methyltransferase, TrmH family [Finegoldia magna ACS-171-V-Col3] gi|302311855|gb|EFK93866.1| RNA methyltransferase, TrmH family [Finegoldia magna ACS-171-V-Col3] Length = 243 Score = 99.1 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 44/253 (17%), Positives = 104/253 (41%), Gaps = 18/253 (7%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ YK ++S +K ++ + + G A+ + ++ Sbjct: 6 SNKIYKHVKSLYKK-KYRQKYNEFVIEGYKLYQEAIKSNINIKQVIIREGENFIDE---- 60 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 +T + + +G+ + + + + + ++ L+++NDP Sbjct: 61 -------CVYFDSKTFNSLSEM-NNPEGIICVVSFIEQKDVKSDQ----ILFLENINDPG 108 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+RSA AF + I+ + ++ +SA G+L + + K + + Sbjct: 109 NLGTIIRSAEAFGYNKIVLSNNSCDIYNSKTIRSAMGSLFRMNISYENINVLEKYKSNGF 168 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 L +S+ LE + K +K LI+G E G+ + ++ A + M + ++LN Sbjct: 169 KIYETSLEKNSRSILEIKNK-EKHVLIIGNEANGISDEIKKYADEFLIIPMDNVTESLNA 227 Query: 266 SNAAAVALYITQN 278 S AA+++++ Sbjct: 228 SIAASLSMFYLSK 240 >gi|322831470|ref|YP_004211497.1| tRNA/rRNA methyltransferase (SpoU) [Rahnella sp. Y9602] gi|321166671|gb|ADW72370.1| tRNA/rRNA methyltransferase (SpoU) [Rahnella sp. Y9602] Length = 367 Score = 99.1 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 88/244 (36%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 123 RRQRQEETRVYGENACQALFASRPDAIVRAWFVQSVTPRFREALRWMAANRKAYHVVEDD 182 Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ L ++ L++V +PHN+G I+RS Sbjct: 183 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQTAPAKDCVLALENVGNPHNLGGIMRSCA 241 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F + + + + ES ++A G EH+ I N + L+ G+ + SS Sbjct: 242 HFGIN-GMMVQDPAQLESGAAVRTAEGGAEHVKAISADNFLEVLETFRKAGYTIVTTSSH 300 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L + K+ L+LG E GL + + G +++LNVS A+ + L Sbjct: 301 KGTALGKAQLPAKMVLVLGEESDGLSDSAWQQGDLSVSIGGTGKVESLNVSVASGILLAE 360 Query: 276 TQNH 279 Sbjct: 361 WWRQ 364 >gi|293363662|ref|ZP_06610412.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma alligatoris A21JP2] gi|292552769|gb|EFF41529.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma alligatoris A21JP2] Length = 231 Score = 99.1 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 108/230 (46%), Gaps = 10/230 (4%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G ++V A N + I ++ + +A FPV+ + + +++ + HQ Sbjct: 8 GKNSVVDAY-NNNWPIEKVFLLHEQNKKFFKNA----KFPVEVIRKEKMEEWTNE--NHQ 60 Query: 113 GLALETAPLLSPTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 G + L+ + +L++VLDH+ DPHN+GAI+RSA A II + S Sbjct: 61 GFLATIKEINYSNLNSLIIDKPKLVLVLDHIQDPHNLGAIIRSANAAGVKHIILPRDRSA 120 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 ++ + K +SG I +IR+++++ + ++ + + Q ++++ Sbjct: 121 EINSTVIKVSSGGFIGIKFIRVNSVSATINFLKNNNFWVYASALDKKAQAYNQVSYSEQV 180 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ALI+G EG G+ T A ++ G +++LNVS A + L+ + Sbjct: 181 ALIVGNEGNGVSKSTLNMADQKIYIEQFGTVQSLNVSVATGILLFEIIKN 230 >gi|283458458|ref|YP_003363084.1| rRNA methylase [Rothia mucilaginosa DY-18] gi|283134499|dbj|BAI65264.1| rRNA methylase [Rothia mucilaginosa DY-18] Length = 344 Score = 99.1 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 60/293 (20%), Positives = 104/293 (35%), Gaps = 42/293 (14%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--IFQLLATKNALARLDWDAN 86 + + ++ ++ + G V AL +K + + T+ A R + A Sbjct: 49 RVRDIAKLRTRA-ARTKKGQFLVEGPQAVREALKAHLQKPILDAVYVTEAAFDRHEDIAE 107 Query: 87 LP------------HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---N 131 L ++ V + ++ + + +A+ S +L N Sbjct: 108 LLEQVYGTPTPEEGRRVFMRVVTDEVLEAMADSVSPQGIIAVSFMVDASFSLLWGDGALN 167 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +L+ VL V DP N G ILR A A D +ITTK + +S +G+L H+P I+ Sbjct: 168 PKLIAVLSRVQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKTVRSTAGSLFHVPIIQ 227 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLE-----------------------QEIKNDK 228 L D + + S G + L+ + Sbjct: 228 GVQLEDFAEDVKSQGTAVLAADGYGAVNLQELSEYTAARRAGVEASAPSGVKGNFDLSKP 287 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280 + G E +GL + + AT + + G ++LNV AAAV LY Sbjct: 288 TMWLFGNEAQGLNAEEKAAATMRVAVPVYGSAESLNVGTAAAVCLYASAMAQR 340 >gi|226324182|ref|ZP_03799700.1| hypothetical protein COPCOM_01961 [Coprococcus comes ATCC 27758] gi|225207731|gb|EEG90085.1| hypothetical protein COPCOM_01961 [Coprococcus comes ATCC 27758] Length = 159 Score = 99.1 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 76/156 (48%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 LDA LLMVLD++ DP N+G ILR+ A G+I + + + +S G++ Sbjct: 3 DLDAQGRKPLLMVLDNLQDPGNLGTILRAGEAAGVTGVIMSHDCVDIYNPKVIRSTMGSV 62 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P++ + +L + L+ + G + K +QE A ++G EG GLR + Sbjct: 63 YRMPFVYVEHLPETLEVLAEAGIHSYAAHLKGKNSYDQEDYTRGTAFLIGNEGNGLRDEV 122 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + M G +++LN + A++V ++ Sbjct: 123 ADVAECYIKIPMCGEVESLNAAVASSVLMFEAARQR 158 >gi|146299225|ref|YP_001193816.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] gi|146153643|gb|ABQ04497.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] Length = 242 Score = 99.1 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 44/254 (17%), Positives = 94/254 (37%), Gaps = 21/254 (8%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S +QK + + F GV + L + + L T N + Sbjct: 6 QIKLISSLHQK-KQRFANQLFFAEGVKVIQELLQSNFE-LEHLYTTLNDFEEVQSSKRTL 63 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + Q + KI + LA+ P+ + +++ L++ LD + DP N+G Sbjct: 64 -------INEQELKKISALTTPNSCLAVFKMPVENQIINSG----LILALDDIRDPGNLG 112 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R F I+ +K + + ++ G++ + + + S Sbjct: 113 TIMRLCDWFGIKQIVCSKETVDIYNPKVVQATMGSIARVNVNYVDL-----KAFLSQTKL 167 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNV 265 + + + Q +I+G E G+ + ++ T+ + G ++LNV Sbjct: 168 PVFGTFMDGDTIYQSNLPQNGIIIMGNEANGISAEIEKIVTTRLTIPRFGELQKTESLNV 227 Query: 266 SNAAAVALYITQNH 279 + A A+ L + + Sbjct: 228 ATATAIILSEFKRN 241 >gi|227545546|ref|ZP_03975595.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri CF48-3A] gi|300908384|ref|ZP_07125847.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri SD2112] gi|227184483|gb|EEI64554.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri CF48-3A] gi|300893791|gb|EFK87149.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri SD2112] Length = 290 Score = 99.1 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 94/260 (36%), Gaps = 20/260 (7%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-----ANLPHPF---PVK 94 P + AL R L+ K L N P+ Sbjct: 31 EPNPGLFIAESPKVIERALRAGYRPASLLIEEKELERDLADLDHEMAINQTRGLEQTPIY 90 Query: 95 TVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIG 148 V + + ++ G + +G + P+L+ + + +L+ V +P NIG Sbjct: 91 VVNSKLLRQLAGGGYNLLRGALAAMHRVERPSLNNFLATMPSDHPRIAILESVVNPTNIG 150 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL------QKM 202 AI RSA A DG+I T + ++ A G + +P+ + + Sbjct: 151 AIFRSAAALGIDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDAKVWQSEGVDLLHRA 210 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + Q K D++A+ILG+EG GLR T + + M + + Sbjct: 211 GYKTAAMALRHNTVDIDDPQLAKVDRLAIILGSEGPGLRENTITQSDFTIKIPMATGVDS 270 Query: 263 LNVSNAAAVALYITQNHFAK 282 LNV+ A+A+A + N K Sbjct: 271 LNVAAASALAFWELGNRKVK 290 >gi|317503287|ref|ZP_07961339.1| TrmH family RNA methyltransferase [Prevotella salivae DSM 15606] gi|315665593|gb|EFV05208.1| TrmH family RNA methyltransferase [Prevotella salivae DSM 15606] Length = 250 Score = 99.1 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 93/259 (35%), Gaps = 17/259 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 K ++S K ++ Q G V L ++ ++AT + + Sbjct: 5 AKIKFIKSLQLK-KNREQTHLFLAEGYKLVGELLA--KQRAHTIVATHEW----IENQSC 57 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V V + + K+ + Q L P D + S L ++LD V DP N+ Sbjct: 58 VQANEVIEVTQEELKKVSLLQHPQQVLG--VFPFFQTGNDTIDISALTLMLDGVQDPGNL 115 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R A F + I + + + + ++ G++ + +S + Sbjct: 116 GTIIRIADWFGINDIFCSHETADLYNPKVVQATMGSITRVRLHYVSLV---SVLKQLPED 172 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKAL 263 I + + E + +I+G EG G+ + ++ + + ++L Sbjct: 173 YPIYGTLLEGNNIYDEQLSTNGLIIMGNEGNGISTEIRQLVSHPLRIPNYPPDAATAESL 232 Query: 264 NVSNAAAVALYITQNHFAK 282 NV+ A A+ + +K Sbjct: 233 NVAIATAITCAEFRR-LSK 250 >gi|153840022|ref|ZP_01992689.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio parahaemolyticus AQ3810] gi|149746420|gb|EDM57441.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio parahaemolyticus AQ3810] Length = 128 Score = 99.1 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + Q +A+++GAEG G+R T+ET + + M G + +LNVS A+ + L+ Sbjct: 62 HDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAV 121 Query: 278 NHF 280 Sbjct: 122 RQR 124 >gi|153800597|ref|ZP_01955183.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3] gi|124123886|gb|EAY42629.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3] Length = 257 Score = 99.1 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N + K+ + AT LA Sbjct: 21 KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEHAQALA---G 75 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K+ + + +A+ P ++ + L++ LD V+DP N+G I Sbjct: 76 FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 131 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II ++ + + + G+ + ++ + + Sbjct: 132 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 191 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S + + L++G+E G+R + + T + G ++LNV+ A Sbjct: 192 EGVSVHQ-----TAFQAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 246 Query: 271 VALYITQNH 279 + L + Sbjct: 247 IILDNIRRQ 255 >gi|229505582|ref|ZP_04395092.1| RNA methyltransferase TrmH family [Vibrio cholerae BX 330286] gi|229510746|ref|ZP_04400225.1| RNA methyltransferase TrmH family [Vibrio cholerae B33] gi|229517867|ref|ZP_04407311.1| RNA methyltransferase TrmH family [Vibrio cholerae RC9] gi|229523380|ref|ZP_04412787.1| RNA methyltransferase TrmH family [Vibrio cholerae TM 11079-80] gi|229608600|ref|YP_002879248.1| RNA methyltransferase TrmH family [Vibrio cholerae MJ-1236] gi|255744607|ref|ZP_05418558.1| RNA methyltransferase TrmH family [Vibrio cholera CIRS 101] gi|262161261|ref|ZP_06030372.1| RNA methyltransferase TrmH family [Vibrio cholerae INDRE 91/1] gi|229339743|gb|EEO04758.1| RNA methyltransferase TrmH family [Vibrio cholerae TM 11079-80] gi|229344582|gb|EEO09556.1| RNA methyltransferase TrmH family [Vibrio cholerae RC9] gi|229350711|gb|EEO15652.1| RNA methyltransferase TrmH family [Vibrio cholerae B33] gi|229357805|gb|EEO22722.1| RNA methyltransferase TrmH family [Vibrio cholerae BX 330286] gi|229371255|gb|ACQ61678.1| RNA methyltransferase TrmH family [Vibrio cholerae MJ-1236] gi|255737638|gb|EET93032.1| RNA methyltransferase TrmH family [Vibrio cholera CIRS 101] gi|262029011|gb|EEY47664.1| RNA methyltransferase TrmH family [Vibrio cholerae INDRE 91/1] Length = 244 Score = 99.1 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N + K+ + AT LA Sbjct: 8 KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEHAQALA---G 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K+ + + +A+ P ++ + L++ LD V+DP N+G I Sbjct: 63 FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II ++ + + + G+ + ++ + + Sbjct: 119 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S + + L++G+E G+R + + T + G ++LNV+ A Sbjct: 179 EGVSVHQ-----TAFQAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNIRRQ 242 >gi|15640821|ref|NP_230452.1| RNA methyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121585767|ref|ZP_01675562.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80] gi|121725984|ref|ZP_01679283.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52] gi|147674554|ref|YP_001216286.1| RNA methyltransferase [Vibrio cholerae O395] gi|153817294|ref|ZP_01969961.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457] gi|153821410|ref|ZP_01974077.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33] gi|227080982|ref|YP_002809533.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2] gi|254847940|ref|ZP_05237290.1| RNA methyltransferase [Vibrio cholerae MO10] gi|297581202|ref|ZP_06943126.1| RNA methyltransferase [Vibrio cholerae RC385] gi|298499065|ref|ZP_07008872.1| RNA methyltransferase [Vibrio cholerae MAK 757] gi|9655252|gb|AAF93967.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121550130|gb|EAX60146.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80] gi|121631466|gb|EAX63836.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52] gi|126512210|gb|EAZ74804.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457] gi|126521120|gb|EAZ78343.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33] gi|146316437|gb|ABQ20976.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395] gi|227008870|gb|ACP05082.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2] gi|227012627|gb|ACP08837.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395] gi|254843645|gb|EET22059.1| RNA methyltransferase [Vibrio cholerae MO10] gi|297534518|gb|EFH73355.1| RNA methyltransferase [Vibrio cholerae RC385] gi|297543398|gb|EFH79448.1| RNA methyltransferase [Vibrio cholerae MAK 757] Length = 257 Score = 99.1 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N + K+ + AT LA Sbjct: 21 KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEHAQALA---G 75 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K+ + + +A+ P ++ + L++ LD V+DP N+G I Sbjct: 76 FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 131 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II ++ + + + G+ + ++ + + Sbjct: 132 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 191 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S + + L++G+E G+R + + T + G ++LNV+ A Sbjct: 192 EGVSVHQ-----TAFQAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 246 Query: 271 VALYITQNH 279 + L + Sbjct: 247 IILDNIRRQ 255 >gi|255326342|ref|ZP_05367426.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296] gi|255296559|gb|EET75892.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296] Length = 333 Score = 99.1 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 60/293 (20%), Positives = 104/293 (35%), Gaps = 42/293 (14%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--IFQLLATKNALARLDWDAN 86 + + ++ ++ + G V AL +K + + T+ A R + A Sbjct: 38 RVRDIAKLRTRA-ARTKKGQFLVEGPQAVREALKAHLKKPILDAVYVTEAAFDRHEDIAE 96 Query: 87 LP------------HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---N 131 L ++ V + ++ + + +A+ S +L N Sbjct: 97 LLEQVYGTPTPEEGRRVFMRVVTDEVLEAMADSVSPQGIIAVSFMVDASFSLLWGEGALN 156 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +L+ VL V DP N G ILR A A D +ITTK + +S +G+L H+P I+ Sbjct: 157 PKLIAVLSRVQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKTVRSTAGSLFHVPIIQ 216 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLE-----------------------QEIKNDK 228 L D + + S G + L+ + Sbjct: 217 GVQLEDFAEDVKSQGTAVLAADGYGAVNLQELSEYTAARRAGVEASAPSGVKGNFDLSKP 276 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280 + G E +GL + + AT + + G ++LNV AAAV LY Sbjct: 277 TMWLFGNEAQGLNAEEKAAATMRVAVPVYGSAESLNVGTAAAVCLYASAMAQR 329 >gi|254411771|ref|ZP_05025547.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC 7420] gi|196181493|gb|EDX76481.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC 7420] Length = 306 Score = 98.8 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 49/280 (17%), Positives = 101/280 (36%), Gaps = 25/280 (8%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 +++ K+ + +++ H AK RR + + + A Sbjct: 42 MLTSTKNPLVKAIRKLHTAKGRREEQLLLLEGTHLL-------------------AEACA 82 Query: 63 NPSRKIFQLLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + L T + W PH V+ V + + Q + Sbjct: 83 VNY-PLVTLCCTPDWQQSHPQLWQDATPHCQRVELVSASVLKAMA---TTVQPDGVVVTA 138 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 S L +VL+ + DP N+G I+R+A A DG+ + E+ + +++ Sbjct: 139 KSSFLAPPQIPCSLGLVLETLQDPGNLGTIIRTATAAGVDGLWLSPDSVDLENPKVLRAS 198 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 +G +P +NL+ +++ + G Q + + + ++LG E GL Sbjct: 199 AGQWFRLPISANANLSQVVRQSQAQGVQVVATLPKAPLSYWEIDWRIPTLILLGNEAAGL 258 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + + +++LNV+ AAA+ +Y Sbjct: 259 SSELTVLADQAVQIPLGQDVESLNVAIAAALIVYEALRQR 298 >gi|27367704|ref|NP_763231.1| RNA methyltransferase, TrmH family [Vibrio vulnificus CMCP6] gi|27359276|gb|AAO08221.1| RNA methyltransferase, TrmH family [Vibrio vulnificus CMCP6] Length = 244 Score = 98.8 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N + K+ Q+ AT L + + Sbjct: 8 KLLRALGQK-KQRKALGLFLVQGEKNVLE-LANSTLKVKQVFATAEFLQQHAVELA---G 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + + K + + A + P ++ + L++ LD V+DP N+G I Sbjct: 63 YECIEASLDDLTKASTLVSNNA----AIAVVEIPAIETPKAQGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II + + + + G+ + + + Q + Sbjct: 119 IRVADWYGIKHIIASSDCADPYNPKTISATMGSFGRVQVSLVDLPSYLEQANLPIYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K + + L++G+E G+R + + T + G ++LNV+ A Sbjct: 179 EGESVHK-----TTFSAQGILLMGSESHGVREQASKLVTDKITIPTFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNIRRQ 242 >gi|269838434|ref|YP_003320662.1| tRNA guanosine-2'-O-methyltransferase [Sphaerobacter thermophilus DSM 20745] gi|269787697|gb|ACZ39840.1| tRNA guanosine-2'-O-methyltransferase [Sphaerobacter thermophilus DSM 20745] Length = 190 Score = 98.8 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 57/151 (37%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +V+++V+DPHNI A+LRS A + SAS Sbjct: 8 RQPDLTVVIENVHDPHNISAVLRSCDAVGLLTVHLVYTIEEWPELSRVSSASAVKWLDIV 67 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S S + + L +AL+ G E +G+ + A Sbjct: 68 RHESIEACYQALRAQGFTIYATHLSAASRDLYDLDLTGPVALVFGNEHRGVSDEAVANAD 127 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LN+S A AV+LY Sbjct: 128 GSVVIPMMGMVQSLNISVACAVSLYEALRQR 158 >gi|108801430|ref|YP_641627.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS] gi|119870583|ref|YP_940535.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS] gi|108771849|gb|ABG10571.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS] gi|119696672|gb|ABL93745.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS] Length = 270 Score = 98.8 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 103/254 (40%), Gaps = 6/254 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ S + GV V + + LL T L L D + Sbjct: 17 DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMVASRFTP-RALLGTDRRLTELGTDLD-A 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + + ++VG LA + P DA+ ++ + VL+ VND N+G Sbjct: 75 VDAPFYRADAEVMAEVVGFHLNRGVLASASRPPEISVADALDGARTVAVLEGVNDHENLG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +I R+A D +I + + + G +P+ R + D L + GFQ Sbjct: 135 SIFRNAAGLGVDAVIFGAGCADPLYRRAVRVSMGHALLVPFARAAAWPDELNTLRDKGFQ 194 Query: 209 TIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + ++ D + +++A ++GAEG GL + + + M +LN Sbjct: 195 LLAMTPDPAADTLATAMTALAGERVAFLVGAEGPGLTERVMRASDRRVRIPMSRGTDSLN 254 Query: 265 VSNAAAVALYITQN 278 V+ AAA+A Y Sbjct: 255 VATAAALAFYERVR 268 >gi|91784104|ref|YP_559310.1| putative RNA methylase [Burkholderia xenovorans LB400] gi|91688058|gb|ABE31258.1| Putative RNA methylase [Burkholderia xenovorans LB400] Length = 275 Score = 98.8 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 106/261 (40%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + + L G H SA L+ + + T AL Sbjct: 16 KAITSRDNPLYKRLKALAGSTHQQRKSGHALLEGFHLASAYLDVAGQPEMCI-VTDGALR 74 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G+ L L +P D V + L++ Sbjct: 75 HDEAQAIVSRIEDHRLVTLPDALFGQLSNVVHGVGILLLVEKLATPLPDEVAQTCLVL-- 132 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +S GA + Sbjct: 133 DGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDVEAQAL 192 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++++ T +++ + + +A + G EG G+ ++ + + PG Sbjct: 193 IERLAVPIVITDSHGAEAIYDCD---LSGPLAWVFGNEGAGVSQIWRDAVSLRVTIPQPG 249 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV ++ Sbjct: 250 GMESLNVAAAAAVCVFEQCRQ 270 >gi|315608080|ref|ZP_07883073.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574] gi|315250549|gb|EFU30545.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574] Length = 276 Score = 98.8 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 81/263 (30%), Gaps = 17/263 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 K + S K ++ G V L + L AT+ + ++ Sbjct: 11 AKIKYIHSLELK-KNRKAEGKFVAEGPKIVGELLAVGQASL--LAATREWFEKNSPISSS 67 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDH 140 + V + I + + V + P++ + L++ LD Sbjct: 68 TEKYEVTEEELRKISFLQHPQMVIGVFDIPNKHSTPPSITQEAYTASAAWDSSLILALDG 127 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R A F I+ ++ + + + ++ G++ + Sbjct: 128 VQDPGNLGTIIRIADWFGITDIVCSEDTADAYNPKTVQATMGSIARTKIVYTDLSAYLES 187 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI- 259 + L +I+G EGKG+ + + Sbjct: 188 LPNETPVYGTMLDGTDIYEQS---LTHHGVIIMGNEGKGISKEITRHINHRLFIPGYPKD 244 Query: 260 ---IKALNVSNAAAVALYITQNH 279 ++LNV+ A A+ + Sbjct: 245 RPSAESLNVAIATAITCAEFRRR 267 >gi|259502996|ref|ZP_05745898.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] gi|259169034|gb|EEW53529.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] Length = 288 Score = 98.8 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 97/269 (36%), Gaps = 20/269 (7%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---- 85 Y ++ QP + AL R LL + LAR D Sbjct: 18 YVRLNEAQLFHARGPQPGLFIAESPKVIERALRAGYRPA-SLLMEEKVLARDLADLDHEM 76 Query: 86 -----NLPHPFPVKTVPPQTIDKIVGKE----AVHQGLALETAPLLSPTLDAVRNSQLLM 136 P+ V Q I ++ G A+ + L + Sbjct: 77 AANQTAGLGQTPIYVVNNQLISQLAGYNLLRGALAAMYRVPRPDLNHFLATLPAAHPRIA 136 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VL+ + +P N+GAI RSA A DGII T + ++ A G + +P+ I T Sbjct: 137 VLERIVNPANVGAIFRSAAALGIDGIIVTSDSADPLYRRSSRVAMGTVFQVPWTYIDAHT 196 Query: 197 DAL------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 ++ + + Q + DK+A+ILG+EG GL +T + Sbjct: 197 WQTAGVRLLHRLGYQTAAMALRHNTVRIDDPQLAQVDKLAIILGSEGPGLAEQTIAQSDF 256 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M + +LNV+ A+A+A + N Sbjct: 257 TIKIPMAAGVDSLNVAAASALAFWELGNR 285 >gi|229530071|ref|ZP_04419461.1| RNA methyltransferase TrmH family [Vibrio cholerae 12129(1)] gi|229333845|gb|EEN99331.1| RNA methyltransferase TrmH family [Vibrio cholerae 12129(1)] gi|327483584|gb|AEA77991.1| RNA methyltransferase, TrmH family [Vibrio cholerae LMA3894-4] Length = 244 Score = 98.8 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N + K+ + AT LA Sbjct: 8 KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEHAQALA---G 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K+ + + +A+ P ++ + L++ LD V+DP N+G I Sbjct: 63 FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II ++ + + + G+ + ++ + + Sbjct: 119 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S + + L++G+E G+R + + T + G ++LNV+ A Sbjct: 179 EGVSVHQ-----TAFKAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNIRRQ 242 >gi|153824637|ref|ZP_01977304.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2] gi|153828259|ref|ZP_01980926.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39] gi|148876213|gb|EDL74348.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39] gi|149741855|gb|EDM55884.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2] Length = 257 Score = 98.8 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N + K+ + AT LA Sbjct: 21 KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEHAQALA---G 75 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K+ + + +A+ P ++ + L++ LD V+DP N+G I Sbjct: 76 FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 131 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II ++ + + + G+ + ++ + + Sbjct: 132 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 191 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S + + L++G+E G+R + + T + G ++LNV+ A Sbjct: 192 EGVSVHQ-----TAFKAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 246 Query: 271 VALYITQNH 279 + L + Sbjct: 247 IILDNIRRQ 255 >gi|300727201|ref|ZP_07060617.1| tRNA/rRNA methyltransferase [Prevotella bryantii B14] gi|299775439|gb|EFI72033.1| tRNA/rRNA methyltransferase [Prevotella bryantii B14] Length = 257 Score = 98.8 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 90/261 (34%), Gaps = 16/261 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 K + S QK +H + G V L + + A + + N+ Sbjct: 5 AKIKYIHSLEQK-KHRKEEGVFVAEGPKIVGDLLKLLNPTLIV------ATQKWLLENNV 57 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT--LDAVRNSQLLMVLDHVNDPH 145 H V + + K+ + Q LA+ L ++ +L + LD V DP Sbjct: 58 SHNCEVIEATAEELRKVSFLQHPQQVLAVFPQFKNETDKNLVSLPTQKLTLALDDVQDPG 117 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R A F + I+ + + + + ++ G++ + Q S Sbjct: 118 NLGTIIRIADWFGIENIVCSMDTADIYNPKVIQATMGSIARVKITYTDLKQYLKQIDKST 177 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IK 261 L + E + +I+G EGKG+ P T + Sbjct: 178 PIYGTLLDGKNIYQQE---LSSHGLIIMGNEGKGISPDIAAMVTHKLLIPNYPEGKDTAD 234 Query: 262 ALNVSNAAAVALYITQNHFAK 282 +LNV+ A A+ + + + Sbjct: 235 SLNVAIATAITCSEFRRYGNR 255 >gi|289178492|gb|ADC85738.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis BB-12] Length = 309 Score = 98.8 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 39/264 (14%), Positives = 84/264 (31%), Gaps = 20/264 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--- 85 +++ +H + + G V AL + I + + A Sbjct: 32 RIRRISEL-TNRKHRQKAGKFLIEGPQCVREALTWQPQIIQDVYVRTDGADPDSPIASTA 90 Query: 86 -------NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + V + + ++ +A + L Sbjct: 91 LGKLAGEAMEERIHVHKMTQEVEHRVSHDAQGVFAVADLNSCRDLLGRVPQTPHPFLAAF 150 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 + DP N G ++RSA A CD ++ + + ++ +G+L H+P + + Sbjct: 151 WQMRDPGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLPVLAMDERAFF 210 Query: 199 LQKMHS---------WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +G + S +E+ A++ G E +GL + + Sbjct: 211 DLCRERDTTVLAADVYGTEGKPPVSLPDLLRNRELVEGSKAVLFGNEARGLTTELLDECA 270 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + + G ++LN+ +AAV L Sbjct: 271 MSVSIPIYGKAESLNLGTSAAVML 294 >gi|219683722|ref|YP_002470105.1| rRNA methylase [Bifidobacterium animalis subsp. lactis AD011] gi|219621372|gb|ACL29529.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis AD011] Length = 292 Score = 98.8 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 39/264 (14%), Positives = 84/264 (31%), Gaps = 20/264 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--- 85 +++ +H + + G V AL + I + + A Sbjct: 15 RIRRISEL-TNRKHRQKAGKFLIEGPQCVREALTWQPQIIQDVYVRTDGADPDSPIASTA 73 Query: 86 -------NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + V + + ++ +A + L Sbjct: 74 LGKLAGEAMEERIHVHKMTQEVEHRVSHDAQGVFAVADLNSCRDLLGRVPQTPHPFLAAF 133 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 + DP N G ++RSA A CD ++ + + ++ +G+L H+P + + Sbjct: 134 WQMRDPGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLPVLAMDERAFF 193 Query: 199 LQKMHS---------WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +G + S +E+ A++ G E +GL + + Sbjct: 194 DLCRERDTTVLAADVYGTEGKPPVSLPDLLRNRELVEGSKAVLFGNEARGLTTELLDECA 253 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + + G ++LN+ +AAV L Sbjct: 254 MSVSIPIYGKAESLNLGTSAAVML 277 >gi|183601746|ref|ZP_02963116.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis HN019] gi|241190756|ref|YP_002968150.1| rRNA methylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196162|ref|YP_002969717.1| rRNA methylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219352|gb|EDT89993.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis HN019] gi|240249148|gb|ACS46088.1| rRNA methylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250716|gb|ACS47655.1| rRNA methylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793745|gb|ADG33280.1| rRNA methylase [Bifidobacterium animalis subsp. lactis V9] Length = 301 Score = 98.8 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 39/264 (14%), Positives = 84/264 (31%), Gaps = 20/264 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--- 85 +++ +H + + G V AL + I + + A Sbjct: 24 RIRRISEL-TNRKHRQKAGKFLIEGPQCVREALTWQPQIIQDVYVRTDGADPDSPIASTA 82 Query: 86 -------NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + V + + ++ +A + L Sbjct: 83 LGKLAGEAMEERIHVHKMTQEVEHRVSHDAQGVFAVADLNSCRDLLGRVPQTPHPFLAAF 142 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 + DP N G ++RSA A CD ++ + + ++ +G+L H+P + + Sbjct: 143 WQMRDPGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLPVLAMDERAFF 202 Query: 199 LQKMHS---------WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +G + S +E+ A++ G E +GL + + Sbjct: 203 DLCRERDTTVLAADVYGTEGKPPVSLPDLLRNRELVEGSKAVLFGNEARGLTTELLDECA 262 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + + G ++LN+ +AAV L Sbjct: 263 MSVSIPIYGKAESLNLGTSAAVML 286 >gi|237746707|ref|ZP_04577187.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS] gi|229378058|gb|EEO28149.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS] Length = 271 Score = 98.8 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 94/259 (36%), Gaps = 9/259 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-- 81 R++ Y+K++ S + + E L G+H A L + + + + + Sbjct: 6 SRDNPQYRKLRQLASNSAASRKGEYAILDGIHLCQAYLGHVGIPVLCVASQTSQHHPEVS 65 Query: 82 -DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 + I V G+ + Q ++LD Sbjct: 66 AIVQECKSGGAKCLLLTDSLYRPISQ---VENGVDIVFVISKPAVQTCPVLRQTAVLLDR 122 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G+ILRSA A + + + + S + ++ GA + + L D ++ Sbjct: 123 IQDPGNLGSILRSAAAAGIARVFCSAGTASAWSPRVLRAGMGAHFLLEIVENVVLEDVME 182 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 T + + + +A +LG EGKG+R + A+ + G + Sbjct: 183 ASEIPVIATTPYTETTIYDCD---LRLPVAWLLGHEGKGIRESLLDKASDRVVVPHQGAM 239 Query: 261 KALNVSNAAAVALYITQNH 279 ++LNV+ AAV + Sbjct: 240 ESLNVAACAAVCFFEQVRQ 258 >gi|327284696|ref|XP_003227072.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Anolis carolinensis] Length = 382 Score = 98.8 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 63/284 (22%), Positives = 100/284 (35%), Gaps = 24/284 (8%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA--R 80 LR + KK + L+G+ S AL R +L Sbjct: 97 LRNDDFPRKKRVRAQVVLPVERSDGSEMLFGIAPCSLALATSKRSFSRLFLKAGVTPTTE 156 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEA-----------VHQGLALETAPLLSPTLDAV 129 PV+TVP + +D++ G A L Sbjct: 157 AFSRQAEDRKIPVQTVPRKVLDRLSHGGVHQGVCLEATPLHPTGWTQAPAHRLEGATTEE 216 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 L + L+ + DP N+GA+LRSA DGI+ +++ S + V++K++SGA+E + Sbjct: 217 APQLLWLALEGIQDPMNLGAVLRSAHFLGVDGIVMSRKNSCPLTPVVSKASSGAMEVLDV 276 Query: 190 IRISNLTDALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 +L L+ G+ L+LG EG GL P Sbjct: 277 FSADDLPGFLKVKSKEGWEVLGTVAHAKAQDGIPVVSCLDFRWMKPTILVLGNEGHGLSP 336 Query: 243 KTQETATSMAHL-HMP---GIIKALNVSNAAAVALYITQNHFAK 282 +T+ M + I++LNVS AA + L+ K Sbjct: 337 ETKSLCRRMLTIAPGRELEPGIESLNVSVAAGILLHSICAQKVK 380 >gi|198275948|ref|ZP_03208479.1| hypothetical protein BACPLE_02131 [Bacteroides plebeius DSM 17135] gi|198271577|gb|EDY95847.1| hypothetical protein BACPLE_02131 [Bacteroides plebeius DSM 17135] Length = 252 Score = 98.8 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 38/257 (14%), Positives = 80/257 (31%), Gaps = 14/257 (5%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K ++ + G V+ L L+AT L Sbjct: 6 RIKYIRSLEMK-KYRKAEKAFLAEGNKLVNDLL--GHFSCKLLIATAQWLETHPLLLAQE 62 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V + + + Q + D++ L + LD V DP N+G Sbjct: 63 T----IEVSAEELAR-ASLLKTPQEVLAVFDLPSYTYDDSLPGHSLCLALDDVQDPGNLG 117 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I ++ + + + ++ GAL + + Sbjct: 118 TIIRIADWFGIEDIFCSQGTADAFNPKTVQATMGALARVRLHYCDLKEFIRVQTERNVPV 177 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264 ++ +++G EG G+ + + + + ++LN Sbjct: 178 FGTFLDGKNIYSQKLSAQG--VIVMGNEGNGVCKEIENLVSQKLLIPNYPQGKETSESLN 235 Query: 265 VSNAAAVALYITQNHFA 281 V+ A A+ + + Sbjct: 236 VAVATAIVCAEFRRRLS 252 >gi|254505367|ref|ZP_05117514.1| rRNA methylase [Vibrio parahaemolyticus 16] gi|219551484|gb|EED28462.1| rRNA methylase [Vibrio parahaemolyticus 16] Length = 244 Score = 98.8 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 92/249 (36%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N S + Q+ AT+ L + + Sbjct: 8 KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSSLTVKQIFATQEF---LAQNQSELSG 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K + + A + P+++ + L++ LD V+DP N+G I Sbjct: 63 FECIEASLDDLTKASTLVSNNA----AIAVVEIPSVETPKAQGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + I+ + + + + G+ + ++ + Q + Sbjct: 119 IRVADWYGIKHIVASTDCADPYNPKTISATMGSFGRVTVSQLDLPSYLEQSNLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K + L++G+E G+R + + T + G ++LNV+ A Sbjct: 179 EGESVHK-----TEFAAEGILLMGSESHGIREQAAKFVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNLRRQ 242 >gi|254285517|ref|ZP_04960481.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226] gi|150424379|gb|EDN16316.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226] Length = 257 Score = 98.8 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N + K+ + AT LA Sbjct: 21 KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEHAQALA---G 75 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K+ + + +A+ P ++ + L++ LD V+DP N+G I Sbjct: 76 FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 131 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II ++ + + + G+ + ++ + + Sbjct: 132 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 191 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K + L++G+E G+R + + T + G ++LNV+ A Sbjct: 192 EGVSVHK-----TAFKAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 246 Query: 271 VALYITQNH 279 + L + Sbjct: 247 IILDNIRRQ 255 >gi|296138567|ref|YP_003645810.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM 20162] gi|296026701|gb|ADG77471.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM 20162] Length = 266 Score = 98.8 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 99/256 (38%), Gaps = 11/256 (4%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + + +++ T + GV V L + A +LD A Sbjct: 17 DFRDLSTADKRPDTTR--GVVLAEGVPVVERMLASRFAP----HAIMGTAPKLDRLAGQA 70 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P V + ++VG LA P + +++++VL+ VND N+G Sbjct: 71 PAVPRYAVTADLMAEVVGFHLNRGVLAAAERPAPLDPARLLDEARIVVVLEGVNDHENLG 130 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-----LEHIPYIRISNLTDALQKMH 203 +I R+ A D ++ R S + + G H+P AL Sbjct: 131 SIFRNCAALGADAVLFGPRCSDPLYRRAVRVSMGHVLLVPFAHLPAAGWPGDGLALLAER 190 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + S +S + +++AL++GAEG GL + A A + M +L Sbjct: 191 GFRTVALTPSGESTVAQALAGRPERVALVVGAEGPGLSAEMLAAADVRAAIPMHRGTDSL 250 Query: 264 NVSNAAAVALYITQNH 279 NV+ A AVALY + Sbjct: 251 NVATATAVALYECMSQ 266 >gi|291456412|ref|ZP_06595802.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Bifidobacterium breve DSM 20213] gi|291381689|gb|EFE89207.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Bifidobacterium breve DSM 20213] Length = 292 Score = 98.8 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 87/273 (31%), Gaps = 26/273 (9%) Query: 26 NHR---DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA--------- 73 ++ +++ +++ + + G +V A+ + L Sbjct: 9 DNPKSDRVRRITDLA-RAKGRERSGRFLIEGPQSVREAVTWRPDVVQDLYVEVAQALDHP 67 Query: 74 -TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT---LDAV 129 ++ +A+ V I +I + A LD Sbjct: 68 RIVSSTLERIVEASQDATIYVHQCTGDVIRRISADAQGILAVGNAQAMQSDVDDLALDTA 127 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH--- 186 + + V DP N G ++R+A A CD +I + + +S +G+L H Sbjct: 128 DYAPRIAAFWQVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPV 187 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL------ILGAEGKGL 240 + + K + DK A+ + G E +GL Sbjct: 188 FTMRTNEFFDWTSDHHVDVWAADVYGTEKRKPESLPAVLADKAAVSMSQAVLFGNEARGL 247 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 P+ E + + + G ++LN+ +AAV L Sbjct: 248 EPEILERCGRIVSIPLYGKAESLNLGTSAAVML 280 >gi|45644682|gb|AAS73070.1| predicted rRNA methylase [uncultured marine gamma proteobacterium EBAC20E09] Length = 238 Score = 98.8 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 2/230 (0%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAV 110 YG H++ + +NN I +L + + L F +K + K + V Sbjct: 9 YGFHSIESIINNNPHTIKKLFIPSSRDDKRIHQLISLAEKFEIKYEISNKLKKD-PEAIV 67 Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 L D+ + +++LD++ DP N+G+ +RSA + D +I K + Sbjct: 68 ANSETGSLKDLKVFIEDSSNLNLSILILDNIIDPRNLGSCIRSAAVYEIDALIINKHHCA 127 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + V ++G E I +SNL + L+ + GLS ++K + A Sbjct: 128 PLNEVAHNVSAGGAELINIFYVSNLINCLKYLRKSNIDIYGLSEHAQKIYTSCDFTNSSA 187 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +ILG+E G+R KT E+ + L++ K+ NVS A + L Sbjct: 188 IILGSEESGMRQKTSESCDELIKLNLNKKFKSFNVSVATGIILSEISRQR 237 >gi|21674700|ref|NP_662765.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS] gi|21647908|gb|AAM73107.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS] Length = 263 Score = 98.8 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 93/247 (37%), Gaps = 9/247 (3%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPH 89 ++ QK +H G+ TVS L + + L+ + A +LD Sbjct: 16 RLARLGQK-KHRDSEGLFLAEGLRTVSELLQSLSDPSMLHALVFDEKAAGQLDGLERFAG 74 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P ++ + G+ S ++ LD V DP N+G Sbjct: 75 KA--WLAGPNEFKRLAQTTSPQ-GVVAAFRKPESGEFRPASARSFVVALDDVQDPGNVGT 131 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+A F + +I + + +A +S++G++ + +L L+++ + GF Sbjct: 132 IIRTAAWFGAEAVICGRGTADPYNAKSVRSSAGSIFALAIDTTPDLAKTLRRLQADGFTV 191 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNVS 266 + D + + L++G E G+ + A + G +++LN S Sbjct: 192 AASALDGQDYRFFAEWPARRVLVIGNEANGISAEILALADRRLLIPPAGARPAVESLNAS 251 Query: 267 NAAAVAL 273 +A + + Sbjct: 252 VSAGILM 258 >gi|288925042|ref|ZP_06418978.1| RNA methyltransferase, TrmH family [Prevotella buccae D17] gi|288338232|gb|EFC76582.1| RNA methyltransferase, TrmH family [Prevotella buccae D17] Length = 270 Score = 98.8 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 81/263 (30%), Gaps = 17/263 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 K + S K ++ G V L + L AT+ + ++ Sbjct: 5 AKIKYIHSLELK-KNRKAEGKFVAEGPKIVGELLAVGQASL--LAATREWFEKNSPISSS 61 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDH 140 + V + I + + V + P++ + L++ LD Sbjct: 62 TEKYEVTEEELRKISFLQHPQMVIGVFDIPNKHSTPPSITQEAYTASDAWDSSLILALDG 121 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R A F I+ ++ + + + ++ G++ + Sbjct: 122 VQDPGNLGTIIRIADWFGITDIVCSEDTADAYNPKTVQATMGSIARTKIVYTDLSAYLES 181 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI- 259 + L +I+G EGKG+ + + Sbjct: 182 LPNETPVYGTMLDGTDIYEQS---LTHHGVIIMGNEGKGISKEITRYINHRLFIPGYPKD 238 Query: 260 ---IKALNVSNAAAVALYITQNH 279 ++LNV+ A A+ + Sbjct: 239 RPSAESLNVAIATAITCAEFRRR 261 >gi|121604675|ref|YP_982004.1| tRNA/rRNA methyltransferase SpoU [Polaromonas naphthalenivorans CJ2] gi|120593644|gb|ABM37083.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas naphthalenivorans CJ2] Length = 259 Score = 98.8 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 51/254 (20%), Positives = 94/254 (37%), Gaps = 10/254 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ K ++ +Q + + ++L G H AAL + + + + Sbjct: 14 SRDNALIKDLRRLSQDNTAYRKQGRVWLEGDHLCRAALARGLKPVMAVF--SESFWPFAH 71 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + + +I G E+ + + P P V + ++LD V D Sbjct: 72 AEWAQAAIKNIVISDALLPEISGLESPARMGFVLELPTAPPLQANVAS----VILDRVQD 127 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G+ILRSA AF II K + S + ++ GA + + + Sbjct: 128 AGNVGSILRSAAAFGFGQIIALKGTAALWSPKVLRAGMGAHFALRLVEGVDPEALAALTV 187 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + S + A +G EG+G+ A+ + PG ++L Sbjct: 188 PIVVTSSHHGSFLHQQPI----PMPCAWAMGHEGQGVSDDLMARASLKVRIDQPGGEESL 243 Query: 264 NVSNAAAVALYITQ 277 NV+ AAA+ LY + Sbjct: 244 NVAAAAAICLYASA 257 >gi|315226503|ref|ZP_07868291.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105] gi|315120635|gb|EFT83767.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105] Length = 324 Score = 98.4 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 56/304 (18%), Positives = 105/304 (34%), Gaps = 40/304 (13%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I ++ SL D A Y ++ ++R + A Sbjct: 23 MQII------RVDSLDDGRLA-------LYTQLTEIQLRNRLEPDKGIFIAESPKVIDRA 69 Query: 61 LNNPSRKIFQLL--ATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLAL 116 L + L+ A + + + PV + + ++ G L+ Sbjct: 70 LAAGVEPVSFLVEEAWLDGMKAEFDQVDRAWGSTVPVFVASAELLHRLTGYRLHRGALSA 129 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 +L + + ++ + VL+++ D N+GAI+RSA A D ++ T + Sbjct: 130 MHRWVLPTVEEVCKEARRVAVLENIVDYTNVGAIMRSAAALDVDAVLVTPSCADPLYRRA 189 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK------------------ 218 A+ + G + +P+ RI + Sbjct: 190 ARVSMGTVFQVPWTRIGGDDSHAWPHPGIDLLHRLGFTTVAMALIDDSIGLDDLVRRIYD 249 Query: 219 -----PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + DK+ALI G EG GL KT + + M + +LNV+ ++AVA Sbjct: 250 PDAAADATRDQRVDKVALIFGTEGDGLSRKTLASTDLTVKIPMSHQVDSLNVAASSAVAF 309 Query: 274 YITQ 277 Y T Sbjct: 310 YATM 313 >gi|294786867|ref|ZP_06752121.1| RNA methyltransferase, TrmH family [Parascardovia denticolens F0305] gi|294485700|gb|EFG33334.1| RNA methyltransferase, TrmH family [Parascardovia denticolens F0305] Length = 302 Score = 98.4 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 56/304 (18%), Positives = 105/304 (34%), Gaps = 40/304 (13%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I ++ SL D A Y ++ ++R + A Sbjct: 1 MQII------RVDSLDDGRLA-------LYTQLTEIQLRNRLEPDKGIFIAESPKVIDRA 47 Query: 61 LNNPSRKIFQLL--ATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLAL 116 L + L+ A + + + PV + + ++ G L+ Sbjct: 48 LAAGVEPVSFLVEEAWLDGMKAEFDQVDRAWGSTVPVFVASAELLHRLTGYRLHRGALSA 107 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 +L + + ++ + VL+++ D N+GAI+RSA A D ++ T + Sbjct: 108 MHRWVLPTVEEVCKEARRVAVLENIVDYTNVGAIMRSAAALDVDAVLVTPSCADPLYRRA 167 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK------------------ 218 A+ + G + +P+ RI + Sbjct: 168 ARVSMGTVFQVPWTRIGGDDSHAWPHPGIDLLHRLGFTTVAMALIDDSIGLDDLVRRIYD 227 Query: 219 -----PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ + DK+ALI G EG GL KT + + M + +LNV+ ++AVA Sbjct: 228 PDAAADATRDQRVDKVALIFGTEGDGLSRKTLASTDLTVKIPMSHQVDSLNVAASSAVAF 287 Query: 274 YITQ 277 Y T Sbjct: 288 YATM 291 >gi|120405985|ref|YP_955814.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1] gi|119958803|gb|ABM15808.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii PYR-1] Length = 275 Score = 98.4 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 102/254 (40%), Gaps = 6/254 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ S + GV V L + LL T L L D Sbjct: 21 DFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFVP-RALLGTDRRLTELGTDLAGL 79 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + + +VG LA + + ++ + VL+ VND N+G Sbjct: 80 -DAPFYRASAEVMADVVGFHLNRGVLASASRAPELTVPHVLDGARTVAVLEGVNDHENLG 138 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++ R+A DG+I + + + G +P+ + +N L+ + GF+ Sbjct: 139 SVFRNAAGLGVDGVIFGSGCADPLYRRAVRVSMGHALLVPFAKAANWPGDLELLRDQGFR 198 Query: 209 TIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + ++ D + + ++A+++GAEG GL+ T + + M +LN Sbjct: 199 LLAMTPDPTVQTLAQAMSGLAEQRVAILVGAEGPGLKEHTMRASDVRVRIPMSRGTDSLN 258 Query: 265 VSNAAAVALYITQN 278 V+ AAA+A Y Sbjct: 259 VATAAALAFYERDR 272 >gi|323494049|ref|ZP_08099165.1| RNA methyltransferase, TrmH family [Vibrio brasiliensis LMG 20546] gi|323311676|gb|EGA64824.1| RNA methyltransferase, TrmH family [Vibrio brasiliensis LMG 20546] Length = 244 Score = 98.4 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 92/249 (36%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N + Q+ AT LA+ + + Sbjct: 8 KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSELTVKQIFATGEFLAQHAQELS---G 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K + + A + P+++ + L++ LD V+DP N+G I Sbjct: 63 FECIEASLDELTKASTLVSNNA----AIAVVEIPSVEVPKAQGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + I+ + + + + G+ + ++ Q + Sbjct: 119 IRVADWYGIKHIVASTDCADPYNPKTISATMGSFGRVTVSQLDLPAYLEQANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S + + + L++G+E G+R + + T + G ++LNV+ A Sbjct: 179 EGESVHR-----TEFSAQGILLMGSESHGVREQAAKFVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNLRRQ 242 >gi|114667932|ref|XP_001173585.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Pan troglodytes] Length = 353 Score = 98.4 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 65/263 (24%), Positives = 104/263 (39%), Gaps = 28/263 (10%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-----LARLDWDANLPHPFPVKTVPPQT 100 L+G+ AL R + +LL PV Q Sbjct: 47 SRLELLFGMSPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRRQK 106 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRS 153 +D + + VHQG+ +E +PL QL +VLD + DP N GA+LRS Sbjct: 107 LDTMCRYQ-VHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRS 165 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A D +IT++R S + V++KS++GA+E + +LT LQ G+ G Sbjct: 166 AHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225 Query: 214 SDSK-----------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPG 258 + + L+LG EG GL + Q + + + +P Sbjct: 226 GCPSTEDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPP 285 Query: 259 IIKALNVSNAAAVALYITQNHFA 281 +++LNVS AA + L+ + Sbjct: 286 GLESLNVSVAAGILLHSICSQRK 308 >gi|313141621|ref|ZP_07803814.1| 23S rRNA methyltransferase [Helicobacter canadensis MIT 98-5491] gi|313130652|gb|EFR48269.1| 23S rRNA methyltransferase [Helicobacter canadensis MIT 98-5491] Length = 244 Score = 98.4 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 85/241 (35%), Gaps = 5/241 (2%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 M N+ + ++ + + +YG V L KI + K P Sbjct: 1 MSKINKYKNNENRIKLMVVYGKRIVELILAQHQEKIINIYLAKEVDKTFFNRLKKTQK-P 59 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + + + + K HQG LE L +++ ++VL ++D N+G++ R Sbjct: 60 ILRLDAKKAQAMA-KGGNHQGYLLEIEALEPVEFHFIKSMDFVLVLCGISDVGNLGSLFR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA DGI+ ++ + VL S+ + + L Sbjct: 119 SAYGLGVDGIVICGIHNFKQEGVLRASSGA---MLGMPFCVVYNPLDVFHELKQADFVLL 175 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + K AL+LG EG+GL K + M +LNV A A+ Sbjct: 176 GTSLQGQNLPISLESKKALVLGNEGEGLSKKVLAKMDYNLTIPMKRDFDSLNVGVAGAIL 235 Query: 273 L 273 + Sbjct: 236 I 236 >gi|303233677|ref|ZP_07320331.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4] gi|302495111|gb|EFL54863.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4] Length = 243 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 44/253 (17%), Positives = 104/253 (41%), Gaps = 18/253 (7%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ YK ++S +K ++ + + G A+ + ++ Sbjct: 6 SNKIYKHVKSLYKK-KYRQKYNEFVIEGYKLYQEAIKSNINIKQVIIREGENFLDE---- 60 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 +T + + +G+ + + + + + ++ L+++NDP Sbjct: 61 -------CVYFDSKTFNSLSEM-NNPEGIICVVSFIEKKDVKSDQ----ILFLENINDPG 108 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+RSA AF + I+ + ++ +SA G+L + + K + + Sbjct: 109 NLGTIIRSAEAFGYNKIVLSNNSCDIYNSKTIRSAMGSLFRMNISYENINVLEKYKSNGF 168 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 L +S+ LE + K +K LI+G E G+ + ++ A + M + ++LN Sbjct: 169 KIYETSLEKNSRSILEIKNK-EKHVLIIGNEANGISDEIKKYADEFLIIPMDNLTESLNA 227 Query: 266 SNAAAVALYITQN 278 S AA+++++ Sbjct: 228 SIAASLSMFYLSK 240 >gi|189500156|ref|YP_001959626.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides BS1] gi|189495597|gb|ACE04145.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides BS1] Length = 216 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 1/157 (0%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L A R L +++D+VN PHN+ AI+RS A + + ++ A S Sbjct: 13 LLAYRQPDLTVLMDNVNKPHNLSAIIRSCDAVGIETVHAVSEEKIIKNRQRAARGSSKWV 72 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 ++ A + + A+++GAE G T Sbjct: 73 NLELHETIEHAFACLRAQGMQVLVAHHHEE-SVDFRTLDYTLPTAIVMGAELFGPSATTL 131 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A H+ M G++++LNVS AAAV L+ Q + Sbjct: 132 SGADHCIHIPMQGMVESLNVSVAAAVILFEAQRQRTE 168 >gi|313683406|ref|YP_004061144.1| tRNA/rRNA methyltransferase (spou) [Sulfuricurvum kujiense DSM 16994] gi|313156266|gb|ADR34944.1| tRNA/rRNA methyltransferase (SpoU) [Sulfuricurvum kujiense DSM 16994] Length = 250 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 104/243 (42%), Gaps = 16/243 (6%) Query: 45 QPENLF-----LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKT 95 + + F LYG + L + + +I +L +K+ + L +K Sbjct: 9 EKKRFFDSVITLYGRNVAVEVLRDDAVQIHKLHLSKSNRIDETIEEILALAEMRGIEIKY 68 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAIL 151 +++ +I A QG+A++ + + +S L+ LD +N+P N+G I+ Sbjct: 69 HTKESLSRISKNSAQDQGVAIDVVSQNYRSASNIATDLPSSFRLLALDGINNPQNLGMIV 128 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA A DGI+ +R S S ++ K+++G + I I D + + I Sbjct: 129 RSAAASKIDGIVLPRRNSTKLSPLVMKASAG---TLFKIPIYYCEDLSEILGIKDTAIIT 185 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 LSS +K + + +LG E +G+ +T + M +++LNV+ A + Sbjct: 186 LSSHAKDDIHTLKIPSRAIFVLGNETEGVSDAVMRASTHSVSIPMYRGVESLNVAVTAGI 245 Query: 272 ALY 274 + Sbjct: 246 VSF 248 >gi|242238337|ref|YP_002986518.1| methyltransferase [Dickeya dadantii Ech703] gi|242130394|gb|ACS84696.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech703] Length = 349 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 90/243 (37%), Gaps = 6/243 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A N+ I + + R + V Sbjct: 105 RRQRAEETRVYGENACQALFNSRPDAIVRAWFLQEVTPRFREALRWMAANRKAYHVVDND 164 Query: 100 TIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + + G V + + L ++ L+ V +PHN+G I+RS Sbjct: 165 ELTRASGTEHHGGVCFLIKKRRGLDVQTYLPHAPEKDCVLALEDVGNPHNLGGIVRSCAH 224 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F +G++ + S ES ++A G EH+ I+ NL DAL + G+ + SS Sbjct: 225 FGVNGVLV-RDASQLESGAAVRTAEGGAEHVKAIQSDNLIDALSQFRKAGYTIVTTSSHK 283 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L + ++LG E GL + ++ G +++LN+S A + L Sbjct: 284 GTALYDTQLPARTVIVLGQESDGLSDGAWQQGDMKVSINGTGNVESLNISVATGILLAEW 343 Query: 277 QNH 279 H Sbjct: 344 WRH 346 >gi|302550249|ref|ZP_07302591.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302467867|gb|EFL30960.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 287 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 56/291 (19%), Positives = 101/291 (34%), Gaps = 24/291 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN + E I S + S RR K + G A Sbjct: 1 MNRMPTP--ELI-SPRSSRVLAARR-----------LAKRNFRGKERLFLAEGPQAAREA 46 Query: 61 LNN---PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLA 115 + S + +L AT A R V Q + I + Sbjct: 47 AEHRAGGSATLVELFATPEAAERYADIVGAARDAGARVHLASEQVVADISTTVTPQGLVG 106 Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + +L+ +L +V DP N G +LR A A + ++ T + Sbjct: 107 ICRFLDTPFEEVLAARPRLVALLANVRDPGNAGTVLRCADAAGAEAVVLTDASVDVYNPK 166 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIAL 231 +++ G+L H+P ++ A++ + + G + + + L+ E A Sbjct: 167 AVRASVGSLFHLPVAVGVSVERAVEGLRAEGVRVLAADGAGDRDLDAELDKGTMGGPTAW 226 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HFA 281 + G E GL +T+ ++ + + G ++LN++ AAAV LY + A Sbjct: 227 VFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLYASARAQRA 277 >gi|312882046|ref|ZP_07741800.1| tRNA/rRNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] gi|309370341|gb|EFP97839.1| tRNA/rRNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] Length = 244 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 93/249 (37%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V + R + Q+ AT++ L R Sbjct: 8 KLIRALGQK-KQRRAHGLFLVQGEKNVLELVKTDYR-VQQVFATQDFLDRYSQCLI---G 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + + + K + + A + P L ++ LD V+DP N+G I Sbjct: 63 YECIEATLEDLTKASTLVSNNA----AIAIVEIPQLIEPEAEGFMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + I+ ++ + S + G+ + +++ I Sbjct: 119 IRLADWYGIKHIVASEDCADPYSPKTISATMGSFARVTVTQLNL-----PDYLKHAHLPI 173 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + + + + + L++G+E G+R + + T+ + G ++LNV+ AA Sbjct: 174 YGAFLDGENVHNVSFSAQGILLMGSESHGIREQASQHVTNKITIPSFGGAESLNVAMAAG 233 Query: 271 VALYITQNH 279 + + + H Sbjct: 234 IIIDNIRRH 242 >gi|224418084|ref|ZP_03656090.1| hypothetical protein HcanM9_02289 [Helicobacter canadensis MIT 98-5491] gi|253827413|ref|ZP_04870298.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491] gi|253510819|gb|EES89478.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491] Length = 228 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 78/224 (34%), Gaps = 5/224 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG V L KI + K P+ + + + + K Sbjct: 2 VVYGKRIVELILAQHQEKIINIYLAKEVDKTFFNRLKKTQK-PILRLDAKK-AQAMAKGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG LE L +++ ++VL ++D N+G++ RSA DGI+ ++ Sbjct: 60 NHQGYLLEIEALEPVEFHFIKSMDFVLVLCGISDVGNLGSLFRSAYGLGVDGIVICGIHN 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + VL S+ + + L + + K Sbjct: 120 FKQEGVLRASSGA---MLGMPFCVVYNPLDVFHELKQADFVLLGTSLQGQNLPISLESKK 176 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL+LG EG+GL K + M +LNV A A+ + Sbjct: 177 ALVLGNEGEGLSKKVLAKMDYNLTIPMKRDFDSLNVGVAGAILI 220 >gi|308235518|ref|ZP_07666255.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis ATCC 14018] Length = 331 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 31/303 (10%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS-RHTSQPENLFLYGVHTVSAALNN 63 + K ++++ +++AK R + + ++ + + G + AL Sbjct: 25 TPKAEDRVYH--KAYFAKKAAIKRTFADPRLAARRRVDKLGTDSDELVIGRNAALEALRV 82 Query: 64 PSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 QL + R + +D+I HQG+ L+ Sbjct: 83 G-VPSTQLYVANRIEHDDRTREIVKLAGMQGLRLLEADRLEMDRIA-HSTNHQGIILKVQ 140 Query: 120 PLLSPTLD---------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 P +L + L + LD V DP N+GA++RSA AF Sbjct: 141 PYQYYSLQELVDRAEKKSRAMEAADSSAARINARPLFIALDGVTDPQNLGAVIRSAAAFG 200 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +G+I +R S S +A K ++GA H+P R+ NL A+Q + G+ IGL K Sbjct: 201 ANGVILPERRSASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDK 260 Query: 219 PLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + D + ++LG+EGKG+ T+E ++A + + +++LN S AA ++LY Sbjct: 261 LVGETGFETDPLVVVLGSEGKGMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVA 320 Query: 278 NHF 280 N Sbjct: 321 NAR 323 >gi|311114079|ref|YP_003985300.1| RNA methyltransferase [Gardnerella vaginalis ATCC 14019] gi|310945573|gb|ADP38277.1| RNA methyltransferase [Gardnerella vaginalis ATCC 14019] Length = 360 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 31/303 (10%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS-RHTSQPENLFLYGVHTVSAALNN 63 + K ++++ +++AK R + + ++ + + G + AL Sbjct: 54 TPKAEDRVYH--KAYFAKKAAIKRTFADPRLAARRRVDKLGTDSDELVIGRNAALEALRV 111 Query: 64 PSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 QL + R + +D+I HQG+ L+ Sbjct: 112 G-VPSTQLYVANRIEHDDRTREIVKLAGMQGLRLLEADRLEMDRIA-HSTNHQGIILKVQ 169 Query: 120 PLLSPTLD---------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 P +L + L + LD V DP N+GA++RSA AF Sbjct: 170 PYQYYSLQELVDRAEKKSRAMEAADSSAARINARPLFIALDGVTDPQNLGAVIRSAAAFG 229 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +G+I +R S S +A K ++GA H+P R+ NL A+Q + G+ IGL K Sbjct: 230 ANGVILPERRSASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDK 289 Query: 219 PLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + D + ++LG+EGKG+ T+E ++A + + +++LN S AA ++LY Sbjct: 290 LVGETGFETDPLVVVLGSEGKGMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVA 349 Query: 278 NHF 280 N Sbjct: 350 NAR 352 >gi|317049240|ref|YP_004116888.1| tRNA/rRNA methyltransferase SpoU [Pantoea sp. At-9b] gi|316950857|gb|ADU70332.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. At-9b] Length = 359 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 6/243 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 116 RRQRQEETRVYGENACQALFQSRPESIVRAWFVQSVTPRFRETLRWLAANRKAYHVVEDA 175 Query: 100 TIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K G V + +S L ++ L+ V++PHN+G I+RS Sbjct: 176 ELAKASGTEHHGGVCFIIKKRMGMAVSEWLSQAEAKDCVLALEDVSNPHNLGGIMRSCAH 235 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F G++ S ES ++A G EH+ I + + L+ G+ + SS Sbjct: 236 FGVKGLLV-NDASLLESGAAVRTAEGGAEHVQAISGESFSAGLEAFRKAGYTIVTTSSHE 294 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 PL + K+ L+LG E +GL + + G +++LNVS A + L Sbjct: 295 GTPLAKAELPAKMVLVLGQEREGLSDSAFQQGDMSLSIGGTGNVESLNVSVATGILLAEW 354 Query: 277 QNH 279 Sbjct: 355 WRQ 357 >gi|152992691|ref|YP_001358412.1| tRNA (guanosine-2'-O-)-methyltransferase [Sulfurovum sp. NBC37-1] gi|151424552|dbj|BAF72055.1| tRNA (guanosine-2'-O-)-methyltransferase [Sulfurovum sp. NBC37-1] Length = 216 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 2/157 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-- 185 + L ++LD V+ N+ AILR+ A + T + + Sbjct: 22 CCKQPTLKVMLDDVHSSQNLSAILRTCDAVGVQHLYYTTSDNRDLRIHKTITQGAHRWVE 81 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +K + + P + +++G E G+ +T Sbjct: 82 RTRISTEEQRVFLQKKQKEGYQVVVTHLEERAVPFREVDYTKPTIIVMGNEKDGVSSETV 141 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 E A ++ + M G++++LNVS AAA+ LY + A+ Sbjct: 142 ELADTVIIIPMQGMVQSLNVSVAAALILYEAERQLAE 178 >gi|118469110|ref|YP_889920.1| 23s ribosomal RNA methyltransferase [Mycobacterium smegmatis str. MC2 155] gi|118170397|gb|ABK71293.1| 23s ribosomal RNA methyltransferase [Mycobacterium smegmatis str. MC2 155] Length = 277 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 106/257 (41%), Gaps = 8/257 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ + + GV V L + LL T L L D + Sbjct: 19 DFRDLNSVDRRPDLPTGKALVIAEGVLVVQRMLASRFIP-RALLGTDRRLGELAADLDRY 77 Query: 89 ---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 P + + + +G LA D + +++ + VL+ VND Sbjct: 78 PQYADVPFYRASAEVMAEAIGFHLNRGVLASAPRAAELTVDDVIADARTIAVLEGVNDHE 137 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G+I R+A + D +I + + + G +P+ R S+ L+ + Sbjct: 138 NLGSIFRNAAGLAVDAVIFGAGCADPLYRRAVRVSMGHALLVPFARASSWPTDLELLRDK 197 Query: 206 GFQTIGLSSDSK----KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 GF+ + ++ D +++ D++A+++GAEG GL +T + + M Sbjct: 198 GFRLLAMTPDPSAATLSDAMVQLEGDRVAILVGAEGPGLTERTMRASDVRVRIPMSRGTD 257 Query: 262 ALNVSNAAAVALYITQN 278 +LNV+ AAA+A Y Sbjct: 258 SLNVATAAALAFYERAR 274 >gi|212712922|ref|ZP_03321050.1| hypothetical protein PROVALCAL_04020 [Providencia alcalifaciens DSM 30120] gi|212684400|gb|EEB43928.1| hypothetical protein PROVALCAL_04020 [Providencia alcalifaciens DSM 30120] Length = 370 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 45/254 (17%), Positives = 83/254 (32%), Gaps = 7/254 (2%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LP 88 K Q + + +YG + A N I + ++ R Sbjct: 115 KSQIDPEQLRKQRQEETR--IYGENACQAMFKNRPDGIVRAWFLQSVTPRFRDALKWMAA 172 Query: 89 HPFPVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + V + + K G V + L+ ++ ++ L+ V +PH Sbjct: 173 NRKAYHVVDEEELAKASGTEHHGGVCFIIKKRGGMAAEVYLENAVDTDCVLALEDVGNPH 232 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+RS F G+I A + + GA T + + Sbjct: 233 NLGGIMRSCAHFGVKGVILQDAGMLESGAAIRTAEGGAEHIKAIDADGFTTTLDKFRQAG 292 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 S + + + K+ L+LG E GL T + ++ G +++LNV Sbjct: 293 YTIVTTSSHKGSQDIAKVQLPKKMVLVLGQESDGLSDSTWDQGDMSLYIGGTGKVESLNV 352 Query: 266 SNAAAVALYITQNH 279 S A + L + Sbjct: 353 SVATGIMLSQWWSQ 366 >gi|160888268|ref|ZP_02069271.1| hypothetical protein BACUNI_00678 [Bacteroides uniformis ATCC 8492] gi|156862214|gb|EDO55645.1| hypothetical protein BACUNI_00678 [Bacteroides uniformis ATCC 8492] Length = 253 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 85/255 (33%), Gaps = 15/255 (5%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S QK ++ + G V L LLAT L+R + + Sbjct: 7 RIKYIHSLEQK-KNRKADKVFLAEGPKLVGDLL--GHFPCQFLLATSEWLSRNRPLSTVA 63 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V + + + + Q LA+ P + + L + LD V DP N+G Sbjct: 64 ---DATEVSEEELSRASLLKTPQQVLAVFRQPDEETDISVIS-HSLCLALDDVQDPGNLG 119 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I + + A + T + + S Sbjct: 120 TIVRLADWFGIEHIFCSPNTVDIYN----PKTVQATMGGIARVRLHYTPLPEFIRSLKDI 175 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264 + + + + + + +++G EG G+ + + ++ ++LN Sbjct: 176 PVYGTFLDGENMYGQPLSKNGLIVMGNEGNGIGKEVEALINRKLYIPNYPASRETSESLN 235 Query: 265 VSNAAAVALYITQNH 279 V+ A AV + Sbjct: 236 VAIATAVVCAEFRRQ 250 >gi|307565244|ref|ZP_07627738.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A] gi|307346057|gb|EFN91400.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A] Length = 252 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 36/257 (14%), Positives = 82/257 (31%), Gaps = 28/257 (10%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K S K + + G V L + + ++ + + Sbjct: 20 KIKIYSSLGTK-KGREKSCLFIAEGPKVVDDLLQAGFEA-EDIFEDIEDIKKISFLQHPQ 77 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V + + L+ L +L + LD + DP N+G Sbjct: 78 SKLGVFKL-------------------RQNHYSLNDVLGLFSTQKLSLALDGIQDPGNMG 118 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I + S + ++ G++ + I+ + + Sbjct: 119 TIIRIADWFGIENIYCSIDTVDCWSPKVVQATMGSIARVNIYYINLPAFIDKVPNDCPIY 178 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALN 264 T L+ + + + +++G EGKG+ + ++ ++ ++LN Sbjct: 179 TTLLTGCNIYNQK---LSQNGIIVMGNEGKGISEELRQKVNKSLYIPNYSLKESSAESLN 235 Query: 265 VSNAAAVALYITQNHFA 281 V+ A A+ + + Sbjct: 236 VAVATAIICAEFRRNRN 252 >gi|213966414|ref|ZP_03394592.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum SK46] gi|213950934|gb|EEB62338.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum SK46] Length = 290 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 97/266 (36%), Gaps = 15/266 (5%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW----- 83 D + + + + + G V + + + + T+ LA L Sbjct: 25 DIRNLNKSDSRPDLPGGKGLVIAEGTLIVPRLVRS-RFPLRAVFGTRQKLASLADGLTAS 83 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVN 142 +A + P + + + G + +H+GL ++D V + L V++ V Sbjct: 84 EAAIAETVPWFELDREVLAAAAGFD-LHRGLLATADRAPELSVDQVLSGATTLAVMEGVG 142 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 D NIGA+ R+A DG++ + + + G + +P+ + T Q+ Sbjct: 143 DHENIGALFRNAAGMGVDGVVFGAACADPLYRRSVRVSMGHVLTVPFATLPGTTTTWQRS 202 Query: 203 HSWGFQTIGLSSDSKK----PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + L + DKIA+++GAEG GL A + M Sbjct: 203 LDQLKEQGFRVVSMTPAGTVDLWDAMDTDKIAILVGAEGPGLTEHAMAATDVRARIPMSP 262 Query: 259 IIKALNVSNAAAVALYITQN---HFA 281 +LNV+ +AA+A Y A Sbjct: 263 GTDSLNVATSAAIAFYERLRVQSQRA 288 >gi|167761866|ref|ZP_02433993.1| hypothetical protein BACSTE_00209 [Bacteroides stercoris ATCC 43183] gi|167700236|gb|EDS16815.1| hypothetical protein BACSTE_00209 [Bacteroides stercoris ATCC 43183] Length = 270 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 83/236 (35%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + + ++R +S A++ + + L K+ Sbjct: 17 FSTLTEAQLRNRIEPTKGIFIAESPKVISVAIDAGYKPLALLCEQKHITGDAATIIGRSG 76 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + + G L P + R ++ ++V+D V D NIGA Sbjct: 77 DIPVYTGTRELLATLTGYTLTRGVLCAMRRPTPLSLEEVCREARRIVVIDGVVDTTNIGA 136 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T + + + G++ +P+ + L + Sbjct: 137 IFRSAAALGIDAVLLTPTSCDPLNRRAVRVSMGSVFLVPWTWLDAPIGRLSDLGFRTAAM 196 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + K+A+I+G EG GL +T + + + M + +LNV Sbjct: 197 ALTDNSIPIDNPALTAEPKLAIIMGTEGDGLSRETIAGSDYVVRIPMSHGVDSLNV 252 >gi|261343573|ref|ZP_05971218.1| putative tRNA/rRNA methyltransferase [Providencia rustigianii DSM 4541] gi|282568722|gb|EFB74257.1| putative tRNA/rRNA methyltransferase [Providencia rustigianii DSM 4541] Length = 368 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 44/254 (17%), Positives = 82/254 (32%), Gaps = 7/254 (2%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LP 88 K Q + + +YG + A N I + ++ R Sbjct: 112 KSQIDPEQLRKQRQEETR--IYGENACQAMFKNRPDGIVRAWFLQSVTPRFRDALKWMAA 169 Query: 89 HPFPVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + V + ++K G V + L ++ ++ L+ V +PH Sbjct: 170 NRKAYHVVDAEELEKASGTEHHGGVCFIIKKRGGMQAEAYLQEAADTDCVLALEDVGNPH 229 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+RS F G+I A + + GA + + Sbjct: 230 NLGGIMRSCAHFGIQGVILQDAGMLESGAAIRTAEGGAEHVKAIDADGFTPTLEKFRQAG 289 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 S + + + K+ L+LG E GL T + ++ G +++LNV Sbjct: 290 YTIVTTSSHKGSQDIAKVQLPKKMVLVLGQESDGLSDSTWDQGDMSLYIGGTGKVESLNV 349 Query: 266 SNAAAVALYITQNH 279 S A + L + Sbjct: 350 SVATGIMLSQWWSQ 363 >gi|312796260|ref|YP_004029182.1| 23S rRNA methyltransferase [Burkholderia rhizoxinica HKI 454] gi|312168035|emb|CBW75038.1| 23S rRNA methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454] Length = 268 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 51/265 (19%), Positives = 106/265 (40%), Gaps = 8/265 (3%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + R++ +K +++ ++ + L G+H A L++ + +L T++ Sbjct: 8 EPMKTITSRDNPLFKHLKALTVPAQQRKR-GQALLEGLHLAEAYLDSVGQPAHCVL-TES 65 Query: 77 ALARLDWDANLPHPFPVKTV-PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 ALA++ + P + V + + G+A P + V + ++ Sbjct: 66 ALAQVQTAQIVARLDPSRVVRFSDVLFSQLSTLVNGIGIAFVVDVRPRPLPERVEATCVV 125 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + D V D N+G+ILRSA A + + + + S + ++ GA + Sbjct: 126 L--DGVQDAGNVGSILRSAAAAGIGDVFCSPGTAHAWSPKVLRAGMGAQFLLRVHEQVEA 183 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 D L ++ F S + L + +A + G EG G+ + + + + Sbjct: 184 ADLLARLAVPVFV---TDSHDAQALYDVDLSGPLAWVFGNEGAGVSAEWRAAVSRRVTIP 240 Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280 PG +++LNV+ AAAV + Sbjct: 241 QPGGMESLNVAAAAAVCFFEQCRQR 265 >gi|255690837|ref|ZP_05414512.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM 17565] gi|260623577|gb|EEX46448.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM 17565] Length = 267 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 1/221 (0%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQTIDKI 104 + + AL + L K+ + + PV T + + K+ Sbjct: 33 KGLFIVESPKVIKRALEAGYEPLAILCEHKHIIGDASDVIERYSNDLPVYTGSRELLSKL 92 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 G L P+L + ++ ++V+D V D NIGAI RSA A D ++ Sbjct: 93 TGYVLTRGVLCAMHRPILRRVEEICHEARRIVVIDGVVDATNIGAIFRSAAALGMDAVLL 152 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + + + + GA+ IP+ + L + + + Sbjct: 153 RRNSCDPLNRRAVRVSMGAVFCIPWTWMDGSLSDLSNLGFRTAAMALTDNSVSIDDPILM 212 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 K+A+++G+EG GL +T A + + M + +LNV Sbjct: 213 AESKLAIVVGSEGDGLAHETIAEADYVVRIPMSYGVDSLNV 253 >gi|315604404|ref|ZP_07879470.1| possible RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315314110|gb|EFU62161.1| possible RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 293 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 42/266 (15%), Positives = 92/266 (34%), Gaps = 16/266 (6%) Query: 26 NHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++ +++ + + + + G V + + R + + ++ Sbjct: 13 DNPRADRVRRVSGLVGRSARIRSGLMLVEGPQAVRELVRHRPRTLRDVYVREDLWDSSPE 72 Query: 84 DANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 V V + A+ + L L + L+V+ Sbjct: 73 LIASARAATRWVHPVSQAVSAALSSDA--QGVCAVASLDALRRELPDAEVGETLVVIAQG 130 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G I+R+A AF +I + S + +S++G++ H+P + + +A Sbjct: 131 RDPGNVGTIIRTADAFGARAVIAVAGTVDAASPKVVRSSAGSVFHLPVCLVPSFAEARDL 190 Query: 202 MHSW----------GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +H + + + A G E +GL + + Sbjct: 191 IHGRGAALLGTSGGSGSLDLADLLVEGISSRSRLSQSHAWAFGNEARGLSAEEMRACDGL 250 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277 + M G ++LNV++AAA L+ +Q Sbjct: 251 VAIPMTGRAESLNVASAAATCLFASQ 276 >gi|153873345|ref|ZP_02001957.1| SpoU rRNA Methylase family [Beggiatoa sp. PS] gi|152070192|gb|EDN68046.1| SpoU rRNA Methylase family [Beggiatoa sp. PS] Length = 141 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 39/81 (48%) Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + + G +G +S++ L + +A + G+EG GLR T+ET + + G Sbjct: 50 RWLQEQGVWIVGTDENSQESLFETNLTGPLAFVFGSEGTGLRRLTKETCDILVRIPSLGK 109 Query: 260 IKALNVSNAAAVALYITQNHF 280 IK+LNVS A + LY Sbjct: 110 IKSLNVSVATGICLYEAVRQR 130 >gi|157120535|ref|XP_001653652.1| hypothetical protein AaeL_AAEL009023 [Aedes aegypti] gi|108874927|gb|EAT39152.1| conserved hypothetical protein [Aedes aegypti] Length = 462 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 44/304 (14%), Positives = 97/304 (31%), Gaps = 32/304 (10%) Query: 7 KKSEKIFSLKDSH----YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 K+ EK + D H Y KL +N + MQ + L + G ++ A++ Sbjct: 159 KRKEKSLEITDKHSGIKYLKLLKNDPMFGDMQLLMTSRKRRELKSKLVVEGKRLINDAID 218 Query: 63 NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 + + LD + +P + + + + P Sbjct: 219 AGLLLETVIF---SESCHLDDIRAELATLKLIQLPNHVLQEWSDLVTSPGVIGIFQKPSD 275 Query: 123 SPTLDAVRNS----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + + + +V D+V +P+N+G+ILRS + D +I K + + Sbjct: 276 MSKIVIRNRTAESLPITVVCDNVREPNNLGSILRSCASIPVDRVILLKGCTHPWDPKCLR 335 Query: 179 SASGALEHIPYIRISNL---------TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 +GA + + + + S+ + + Sbjct: 336 GGAGAHFRTSVVGPVVMDELAELLPSNPTFLVADNRSERDEESFVLSRYDKANYFDMEHM 395 Query: 230 ALILGAEGKGLRPKTQETATSM------------AHLHMPGIIKALNVSNAAAVALYITQ 277 L++G E G+ + + H+ + +++LN ++A +V L + Sbjct: 396 VLVIGGETHGVSSDVRRYIRQLQEDSNVGNSLYLVHIPLENGVESLNTASAISVILCEIR 455 Query: 278 NHFA 281 Sbjct: 456 RQLN 459 >gi|306824043|ref|ZP_07457416.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|309800747|ref|ZP_07694882.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium dentium JCVIHMP022] gi|304552696|gb|EFM40610.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|308222592|gb|EFO78869.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium dentium JCVIHMP022] Length = 329 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 65/254 (25%), Positives = 110/254 (43%), Gaps = 26/254 (10%) Query: 46 PENLFLYGVHTVSAALNNP---SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + + G + V AL S + R H + +D Sbjct: 65 ESDDLVIGRNAVLEALRCGVPASTLYIAARIEHDDRTREIVRLAGIHGLHLMEADRLEMD 124 Query: 103 KIVGKEAVHQGLALETAPLLSPTL---------------------DAVRNSQLLMVLDHV 141 +I + + HQG+ ++ P +L + L + LD V Sbjct: 125 RIA-RSSNHQGIVMKAQPFQYSSLAELVERADKKSRAMEAANSAAARIAARPLFIALDGV 183 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+GA++RSA AF +G+I +R S S +A K ++GA H+P R+ NLT A++ Sbjct: 184 TDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIES 243 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + G+ +IGL + + D + ++LG+EG GL + T +A + M ++ Sbjct: 244 LKERGYYSIGLDGGGDALVGETGFETDPLVVVLGSEGNGLSRLVRSTCDVIAGIPMSSMV 303 Query: 261 KALNVSNAAAVALY 274 ++LN S AA + LY Sbjct: 304 ESLNASVAAGITLY 317 >gi|300814789|ref|ZP_07095032.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511097|gb|EFK38354.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 223 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 76/237 (32%), Gaps = 14/237 (5%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + + G A+ + + + + +L P Sbjct: 1 YRYEENLFLVEGPIVFKEAIKYMAPSYIAI-----RDDKEEQYKDLLGDRDYFIFPSHLF 55 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +KI ++ ++ + + + LD ++D N+G I+R+A AF+ G Sbjct: 56 NKISDSQSPQGIISYFPMVHKKFQEKSGK----FLYLDKISDAGNMGTIIRTADAFNLSG 111 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I ++ + ++ ++ +P + + Sbjct: 112 VIISEDSCDIYNPKTIRATMASIFRVPIYFLKEDELIKNNFKIIVSALEDSKPIKECD-- 169 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + L++G E G+ K E A + + + +LN AA + Y + Sbjct: 170 ---LSGDLILVIGNEAHGVSQKILERANLKVKIPIRDSVDSLNAGVAAGIFAYEMRK 223 >gi|254283647|ref|ZP_04958615.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [gamma proteobacterium NOR51-B] gi|219679850|gb|EED36199.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [gamma proteobacterium NOR51-B] Length = 250 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 56/241 (23%), Positives = 104/241 (43%), Gaps = 9/241 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQTI 101 + L LYG V AL + S L + + + D ++ + + Sbjct: 7 EKLLVLYGRKPVLEALMDASLDCRTLHLASSNRSAGILKEIVDYAKSRDILIREHTREAL 66 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVA 156 ++ + QG+AL+ +++ ++ + ++ LD V +P N+G I+RSAVA Sbjct: 67 GRLSKNKKQDQGVALDIRCPSFMSIEQFLSAPIDSATRVLALDGVTNPQNVGMIIRSAVA 126 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 GI+ ++ S ++ K+++G L P I L AL++ G + L + Sbjct: 127 SGIGGILYPRKGVASLGPLVIKASAGTLFKAPIISCETLAPALRQCLENGLDIVALDGAA 186 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L + + +LG E G+ T+ AT + M G +++LNV+ AA+ Y Sbjct: 187 PDSLFGDRPSRAAVYVLGGETHGVSDATRSLATRSLSIPMAGGVESLNVAVTAALIGYAA 246 Query: 277 Q 277 Q Sbjct: 247 Q 247 >gi|148544812|ref|YP_001272182.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM 20016] gi|184154155|ref|YP_001842496.1| putative rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227363952|ref|ZP_03848053.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri MM2-3] gi|325683156|ref|ZP_08162672.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A] gi|148531846|gb|ABQ83845.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM 20016] gi|183225499|dbj|BAG26016.1| putative rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227071007|gb|EEI09329.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri MM2-3] gi|324977506|gb|EGC14457.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A] Length = 290 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 99/260 (38%), Gaps = 20/260 (7%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-----ANLPHPF---PVK 94 P + AL R L+ K L N P+ Sbjct: 31 EPNPGLFIAESPKVIERALRAGYRPASLLIEEKELERDLADLDHEMAINQTRGLEQTPIY 90 Query: 95 TVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIG 148 V + + ++ G + +G + P+L+ + + +L+ V +P NIG Sbjct: 91 VVNSKLLRQLAGGGYNLLRGALAAMHRVKRPSLNNFLATMPSDHPRIAILESVVNPTNIG 150 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI RSA A DG+I T + ++ A G + +P+ + + + Sbjct: 151 AIFRSAAALGIDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDAKVWQSEGVDLLHRA 210 Query: 209 TIGLSSDSKKPLEQEIKN------DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 ++ + + +I + D++A+ILG+EG GLR T + + M + + Sbjct: 211 GYKTAAMALRHNTVDIDDPQLAEVDRLAIILGSEGPGLRENTITQSDFTIKIPMATGVDS 270 Query: 263 LNVSNAAAVALYITQNHFAK 282 LNV+ A+A+A + N K Sbjct: 271 LNVAAASALAFWELGNRKVK 290 >gi|313678173|ref|YP_004055913.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma bovis PG45] gi|312950453|gb|ADR25048.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma bovis PG45] Length = 233 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 5/228 (2%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G ++V+ A+ I + N + Sbjct: 8 GKNSVTDAIKA-KLPIEAVYVMSNF---HAEKIKEFSNIKTVVKDANFFKDYNSENHQGY 63 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 L L+ + N + +++LDH+ DPHN GAILR+A A II K S Sbjct: 64 LLFLKDFNYYEIDIIKKDNPKTVLILDHIQDPHNFGAILRTANAAGIKHIIIPKDRSTDV 123 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDKIAL 231 ++ + K +SG + I++SN+ ++ K+ SW + L + P + N+ AL Sbjct: 124 TSTVLKVSSGGFVGVKIIKVSNIVASINKLKSWGFWIYSSLLDQNAVPYNKVEYNEHCAL 183 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++G E KG+ T ++ G ++++NVS A + L+ N+ Sbjct: 184 VVGNEEKGISKPIINTTDVKVYIPQFGTVQSMNVSVATGILLFELVNN 231 >gi|163754275|ref|ZP_02161398.1| RNA methyltransferase, TrmH family protein [Kordia algicida OT-1] gi|161326489|gb|EDP97815.1| RNA methyltransferase, TrmH family protein [Kordia algicida OT-1] Length = 242 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 45/254 (17%), Positives = 89/254 (35%), Gaps = 22/254 (8%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 R K + S +QK ++ G + L N ++ L + L Sbjct: 5 RQIKIITSLHQK-KYRKSTGLFVAEGKKVIQEFL-NSKFELDSLFSVDANLF-------- 54 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V + + KI + ++ LAL V L++ LD V DP N+ Sbjct: 55 ANNSKVTLISEAELKKISFLKTPNKALALF----KIAENAVVNAEGLIVALDDVRDPGNL 110 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R F ++ ++ + + ++ G+L + + + + S Sbjct: 111 GTIIRLCDWFGVTQLVCSEATVDCYNPKVIQATMGSLTRVNVVYANL-----ENYLSETK 165 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII---KALN 264 + + K + + L++G E G+ K T + G I ++LN Sbjct: 166 LPVFGAFMDGKNVYKTNLPKDGILVMGNEANGVSEKISTLITEKIAIPRFGEIQQTESLN 225 Query: 265 VSNAAAVALYITQN 278 V+ A + L + Sbjct: 226 VAMATGILLNEFKR 239 >gi|291280542|ref|YP_003497377.1| RNA methyltransferase TrmH family [Deferribacter desulfuricans SSM1] gi|290755244|dbj|BAI81621.1| RNA methyltransferase, TrmH family [Deferribacter desulfuricans SSM1] Length = 223 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 103/230 (44%), Gaps = 10/230 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + V AL + +K+ ++ + + + P + V DK K A Sbjct: 2 IIYGKNPVKEALKS--KKVRKVFFREQKIFDV-------GNTPFEIVSKSEFDKKFSKHA 52 Query: 110 VHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 ++ + + + + + VLD + DP N GAI+R+ F + I K Sbjct: 53 QSVAAEVDFRYYDFDEVYEDIVLEENVAVLDKIQDPQNFGAIVRAGHCFGINYFIIPKHG 112 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 S S + + K+++G++ + ++++N+ L K+ GF + KK L + + Sbjct: 113 SSSVTPAVFKASAGSIIYSKIVKVTNIAKTLDKLLDAGFFITAADINGKKELSEIKTTKR 172 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +ILG+EG+G+R + A + M G I +LNVS +AA+ Y Sbjct: 173 NCIILGSEGEGIRSNVLKRAHITFKIEMTGKIDSLNVSQSAAITFYHFFK 222 >gi|291319976|ref|YP_003515234.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae] gi|290752305|emb|CBH40276.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae] Length = 233 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 5/228 (2%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G ++V A+ I + + + + + Sbjct: 8 GKNSVIDAIKA-KLPIEAVYVLSKS---HADKLKEFSNIKIVVKDASFFKEYNSENHQGY 63 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 L L+ + N + +++LDH++DPHN GAI+R+A A II K S Sbjct: 64 LLFLKDFNYYEIDVIKKDNPKNVLILDHIHDPHNFGAIIRTANAAGIKHIIIPKDRSTDV 123 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDKIAL 231 ++ + K +SG + I++SN+ +++K+ W + L ++ P + AL Sbjct: 124 TSTVLKVSSGGFVGVKIIKVSNIASSIEKLKKWGFWIYSSLLDENAVPYNKVQYTGNCAL 183 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++G E KG+ ++ G ++++NVS A + L+ N Sbjct: 184 VVGNEEKGVSKPVVNATDVKVYIPQFGTVQSMNVSVATGILLFELVNR 231 >gi|209523630|ref|ZP_03272184.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328] gi|209496035|gb|EDZ96336.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328] Length = 157 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 63/153 (41%), Gaps = 1/153 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R++ +VL + P N G I R+ A + L ++ ++P Sbjct: 1 MRSTMPQLVLVNPQIPQNTGNIARTCAATQTPLHLVGPLGFEISDRYLKRAGLDYWPYVP 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +++ D G + +G S+ K+ + L+ G+E +GL P+ Sbjct: 61 LKYHTHIEDFQAFHQPLGGRWVGFSARGKQNYVSFQFQENDWLLFGSETEGLPPEVLALC 120 Query: 249 TSMAHLHM-PGIIKALNVSNAAAVALYITQNHF 280 + ++ M +++LN+S +AAV L+ + Sbjct: 121 QATVYIPMCQPNVRSLNLSVSAAVGLFEARRQL 153 >gi|238755721|ref|ZP_04617055.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia ruckeri ATCC 29473] gi|238706088|gb|EEP98471.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia ruckeri ATCC 29473] Length = 372 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 90/244 (36%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A N+ I + ++ R + V + Sbjct: 127 RRQRAEETRVYGENACKALFNSRPDAIVRAWFVQSVTPRFRDALKWMAANRKAYHVVDEE 186 Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ L ++ L+ V +PHN+GAI+R+ Sbjct: 187 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQAPKQDCVLALEEVGNPHNLGAIMRTCA 245 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F +G++ + + ES ++A G EHI I + L + G+ + SS Sbjct: 246 HFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRNAGYTIVTTSSH 304 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L + K+ L+LG E GL + + G +++LNVS A + L Sbjct: 305 KGTSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAE 364 Query: 276 TQNH 279 Sbjct: 365 WWRQ 368 >gi|319793968|ref|YP_004155608.1| tRNA/rRNA methyltransferase (spou) [Variovorax paradoxus EPS] gi|315596431|gb|ADU37497.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus EPS] Length = 261 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 92/252 (36%), Gaps = 10/252 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ K ++ Q + ++L G H AAL + + A + Sbjct: 12 SRDNPLLKDLRKLAQDPGAYRKLGRIWLEGDHLCRAALARGVKPAIAVFA--ESFWPTAP 69 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V + + G E+ + P+ + + +VLD + D Sbjct: 70 AEWGASAIKTVVVADDLLRGVSGLESPAPMGFVLDQPVRPELIPDAPS----VVLDRLQD 125 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N G+ILRSA AF +I K + + + ++ GA + Sbjct: 126 AGNAGSILRSAAAFGFTQVIALKGTAALWAPKVLRAGMGAHF----GLRLIEGVEADALD 181 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + SS + L Q A ++G EG+G+ + AT + PG ++L Sbjct: 182 ALKIPLVATSSHRGEWLHQARLPHPCAWLMGHEGQGVSAALEARATHHIRIAQPGGEESL 241 Query: 264 NVSNAAAVALYI 275 NV+ AAA+ L+ Sbjct: 242 NVAAAAAICLHA 253 >gi|323496165|ref|ZP_08101223.1| RNA methyltransferase, TrmH family [Vibrio sinaloensis DSM 21326] gi|323318442|gb|EGA71395.1| RNA methyltransferase, TrmH family [Vibrio sinaloensis DSM 21326] Length = 244 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 87/251 (34%), Gaps = 14/251 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N + + Q+ AT L Sbjct: 8 KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSTLSVKQVFATAEF---LAEYRAELGG 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K + + A + P+++ + L++ LD V+DP N+G I Sbjct: 63 FECIEASLDELTKASTLVSNNA----AIAVVEIPSVEIPKAQGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + I+ + + + + G+ + ++ Q + Sbjct: 119 IRVADWYGIKHIVASTDCADPYNPKTISATMGSFGRVTVSQLDLPRYLEQSNLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K + L++G+E G+R + T + G ++LNV+ A Sbjct: 179 EGESVHK-----TDFAAEGILLMGSESHGIREHAAKFVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNHFA 281 + L + Sbjct: 234 IILDNLRRQHN 244 >gi|262402833|ref|ZP_06079394.1| RNA methyltransferase TrmH family [Vibrio sp. RC586] gi|262351615|gb|EEZ00748.1| RNA methyltransferase TrmH family [Vibrio sp. RC586] Length = 244 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N + K+ + AT LA Sbjct: 8 KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEHAQALA---G 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K+ + + +A+ P ++ + L++ LD V+DP N+G I Sbjct: 63 FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II ++ + + + G+ + ++ + + Sbjct: 119 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S + + L++G+E G+R + + T + G ++LNV+ A Sbjct: 179 EGVSVHQ-----TAFKAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNMRRQ 242 >gi|254443559|ref|ZP_05057035.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium DG1235] gi|198257867|gb|EDY82175.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium DG1235] Length = 258 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 10/243 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKT 95 + + + G H V A+ + R + ++ A DA L V Sbjct: 8 KKTRVEEGRFLIEGWHLVDEAVKSG-RALHAVVFDPEAKREAAEDALLKRVSRMAEEVFE 66 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----AVRNSQLLMVLDHVNDPHNIGAIL 151 + + + +AL + + + L++LD V DP N G+++ Sbjct: 67 ASGSQLSALSDTRSSQGVVALVSRVGMDFSELLKGLPEAGPARLLLLDEVGDPGNCGSMV 126 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTI 210 R+A F DG++ K + E+ +++ G L ++P +L A+ + S Sbjct: 127 RAADWFGLDGVVFGKGCAELENGKTSRATMGGLFYLPVAVGVDLAAAVSELRRSGVQVFT 186 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 +S L ++ AL++G E +G+ E A + G ++LN + AAA Sbjct: 187 TELDESAVSLRDFEFPERCALVIGNEARGVSAAISELADGKLFVERFGSGESLNAAVAAA 246 Query: 271 VAL 273 V L Sbjct: 247 VFL 249 >gi|260892439|ref|YP_003238536.1| tRNA/rRNA methyltransferase (SpoU) [Ammonifex degensii KC4] gi|260864580|gb|ACX51686.1| tRNA/rRNA methyltransferase (SpoU) [Ammonifex degensii KC4] Length = 266 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 94/242 (38%), Gaps = 8/242 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA----R 80 +++ K + QK + + + G H V+ AL + K+ L T + Sbjct: 7 KHNPRVKALLRLAQK-KGREKAGEFLVEGPHLVAEALRHG--KVRALYLTPEFASSPEGE 63 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 V + PQ + + LA+ P S LL+++D Sbjct: 64 ELIRKAEARKVEVFGLAPQLLARAADTATPQGVLAVVEMPSASLPSLLQVELPLLVIVDG 123 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G I+R+A A + G++ K ++ +GA+ +P ++ + + L Sbjct: 124 LQDPGNLGTIVRTAQAVAATGVVVLKGSVDPFHPRAVRATAGAIFRLPVVKGPSAEEVLP 183 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + G + + + P AL++G+EG G P A ++ MPG Sbjct: 184 LLRTAGIELVVADPRGEVPFYAHSFLGPTALVIGSEGGGPGPVWSTLA-RRVYIPMPGKT 242 Query: 261 KA 262 ++ Sbjct: 243 ES 244 >gi|297626644|ref|YP_003688407.1| RRNA methylase family protein (tRNA/rRNA methyltransferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922409|emb|CBL56981.1| RRNA methylase family protein (TRNA/rRNA methyltransferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 269 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 101/259 (38%), Gaps = 13/259 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 + D+H +L D+ +++ N + ++ G + A + LLA Sbjct: 6 QIDDAHDERL----GDFVRLRDVNLRKSLEAEHGLFIAEGDKIIHRAAQAGYQPRSFLLA 61 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 + D PV V ++I G VH+G +++ ++ + Sbjct: 62 PRWIDG--LRDVLDATDAPVYVVSEDLAEQITGFH-VHRGALASFKRIIAWSMHDLLAMD 118 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+V + + D N+GAI+R A DG++ R + K++ G++ +P+ R+ Sbjct: 119 RLVVCEDIVDHTNVGAIIRCAAGLGWDGVLLAPRAADPLYRRAIKTSMGSVFSMPWARMD 178 Query: 194 NLTDALQKMHSWGFQ------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + D L + GF + + K+A+++G EG GL Sbjct: 179 DWRDGLATLQRAGFTVAALALRDDAVGLDEFAARMRARPGKLAILMGTEGAGLSGHWISQ 238 Query: 248 ATSMAHLHMPGIIKALNVS 266 A + + M I +LNV+ Sbjct: 239 ADAAVRIPMAHGIDSLNVA 257 >gi|238787892|ref|ZP_04631688.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia frederiksenii ATCC 33641] gi|238723840|gb|EEQ15484.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia frederiksenii ATCC 33641] Length = 363 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 117 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 176 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154 + K G E H G+ + Q ++ L+ V +PHN+G I+R+ Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMRTC 235 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F +G++ + + ES ++A G EHI I + L G+ + SS Sbjct: 236 AHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 294 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + K+ L+LG E GL + + G +++LNVS A + L Sbjct: 295 HKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLS 354 Query: 275 ITQNH 279 Sbjct: 355 EWWRQ 359 >gi|332701318|ref|ZP_08421406.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio africanus str. Walvis Bay] gi|332551467|gb|EGJ48511.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio africanus str. Walvis Bay] Length = 196 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 62/147 (42%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +V+D+V+DPHN+ AILRS AF + S SAS + Sbjct: 24 LTLVIDNVHDPHNVSAILRSCDAFGVPSVHLYYTTSAFPVLGQKSSASARKWVMRTRHSD 83 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + S+ KPL + A+ILG E G P+ + A + Sbjct: 84 ATSMYRGLKDQNFQVLATGFSERAKPLTAWDLSAPTAVILGNEHNGASPELAQVADGEIY 143 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS AAA+ LY Sbjct: 144 IPMMGMVQSLNVSVAAAIILYEAWRQR 170 >gi|315604571|ref|ZP_07879634.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313583|gb|EFU61637.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 289 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 54/280 (19%), Positives = 108/280 (38%), Gaps = 23/280 (8%) Query: 20 YAKLRRNHR--DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 +A LR + R DY +++ +SR + + A+ R L + Sbjct: 7 HADLREDPRLTDYTRLKDVKLRSRIEPERGLYMAESATVIERAIAAGHRP-RSFLVSARW 65 Query: 78 LARLDWDANLPHP------FPVKTVPPQTIDKIVGKE------AVHQGLALETAPLLSPT 125 L L PV P + ++++ G A Q L + L + Sbjct: 66 LPTLRPLIAAATGSFEDGEVPVFVAPEEVLERMTGFHLHRGALAAMQRPQLPSVVQLLTS 125 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + ++ ++VL+++ D N+GA RSA A D ++ T + + + G + Sbjct: 126 AQPPQPTRRVVVLENLVDHTNVGAAFRSAAALGIDAVLVTPSCADPLYRRSVRVSMGTVF 185 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--------KNDKIALILGAEG 237 +P+ R+ + + + GF L+ + + ++A+++G EG Sbjct: 186 QVPWTRLESWPGDIALLRDAGFTLASLALCEDSISLDDFAALPALRGPDARLAIVMGTEG 245 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 GL T + + M + +LNV+ A+AV + T+ Sbjct: 246 HGLGKHTIAASDYTVKIPMDHGVDSLNVAAASAVVFWATR 285 >gi|167647515|ref|YP_001685178.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31] gi|167349945|gb|ABZ72680.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31] Length = 268 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 93/244 (38%), Gaps = 8/244 (3%) Query: 41 RHTS---QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTV 96 + + G + A + + ++ LL +L + LP PV V Sbjct: 22 KERDLVGRQGLFIAEGETVLRAFVRDAPERVLSLLIDGKRADKLGEVFDGLPDGVPVYVV 81 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLL---SPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 +D I G LA+ P L +++VL + + N+G I R+ Sbjct: 82 GQAVLDAIAGFHLHRGVLAVGAKPQPLSADALLARAGERAIVLVLMGIANHDNLGGIFRN 141 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF DG+I + + GA +P ++ D + + FQ + LS Sbjct: 142 AAAFGVDGVILDADCCDPFYRKAIRVSIGATLGVPTAWLAPGEDVVALLERHDFQALALS 201 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + L + + A++LGAEG GL P A + M G +LNV+ + + L Sbjct: 202 PAADLTLARLDPPARAAVLLGAEGPGLSPAVMARA-RTVGIPMAGGFDSLNVATTSGIVL 260 Query: 274 YITQ 277 + + Sbjct: 261 HHLR 264 >gi|40068479|ref|NP_079140.2| rRNA methyltransferase 1, mitochondrial precursor [Homo sapiens] gi|74736506|sp|Q6IN84|MRM1_HUMAN RecName: Full=rRNA methyltransferase 1, mitochondrial; AltName: Full=Mitochondrial large ribosomal RNA ribose methylase; Flags: Precursor gi|47939214|gb|AAH72411.1| Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Homo sapiens] gi|119577975|gb|EAW57571.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae), isoform CRA_a [Homo sapiens] gi|158258046|dbj|BAF84996.1| unnamed protein product [Homo sapiens] gi|312150994|gb|ADQ32009.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [synthetic construct] Length = 353 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 65/263 (24%), Positives = 104/263 (39%), Gaps = 28/263 (10%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-----LARLDWDANLPHPFPVKTVPPQT 100 L+G+ AL R + +LL PV Q Sbjct: 47 SRLELLFGMTPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRRQK 106 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRS 153 +D + + VHQG+ +E +PL QL +VLD + DP N GA+LRS Sbjct: 107 LDTMCRYQ-VHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRS 165 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A D +IT++R S + V++KS++GA+E + +LT LQ G+ G Sbjct: 166 AHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225 Query: 214 SDSK-----------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPG 258 + + L+LG EG GL + Q + + + +P Sbjct: 226 GCPSTEDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPP 285 Query: 259 IIKALNVSNAAAVALYITQNHFA 281 +++LNVS AA + L+ + Sbjct: 286 GLESLNVSVAAGILLHSICSQRK 308 >gi|192359547|ref|YP_001983124.1| rRNA methylase [Cellvibrio japonicus Ueda107] gi|190685712|gb|ACE83390.1| rRNA methylase [Cellvibrio japonicus Ueda107] Length = 240 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 21/252 (8%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSA----ALNNPSRKIFQLLATKNALARLDWDANL 87 ++ +QK ++ +Q + + G H V A +P+ QLL T Sbjct: 5 DIKKLHQK-KYRNQFGHFLVEGEHLVLELQKAAQLSPALLHSQLLVTDKYQHWQSP---- 59 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 F + + + + +I + +A+ P + L + + L + DP N+ Sbjct: 60 ---FETRVISDKQMAQIADTQTPPGIVAVAPVPDIPGALVDGERA---IYLHEIQDPGNL 113 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ILR+ F + + + + +S+ GA+ H+P + + F Sbjct: 114 GTILRTLAWFGGFRCLLSPGSVDPYNPKVVRSSMGAIFHVPLELDVS-----LAHLAERF 168 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-SMAHLHMPGIIKALNVS 266 I + + + G E +G+ + + M ++ G I++LN++ Sbjct: 169 ARIACLDMDGVAVRNDAFAGHRCYVFGNEARGVPREQLQNFDLHMFNIPGSGAIESLNLA 228 Query: 267 NAAAVALYITQN 278 A + +Y Sbjct: 229 TAVNICVYELMR 240 >gi|326773068|ref|ZP_08232352.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces viscosus C505] gi|326637700|gb|EGE38602.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces viscosus C505] Length = 332 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 74/291 (25%), Positives = 125/291 (42%), Gaps = 15/291 (5%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQ-KSRHTSQPENLFLYGVHTVSAALNN 63 + + ++ K A+ + + + K R ++ L G + V+ A Sbjct: 38 TPRAENRVGHPKARAKARAESRAAQPTRAKQLEKIKRRFDVPEDHEILCGRNAVAEA-AY 96 Query: 64 PSRKIFQLLATKNAL--ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 S I ++ +A RL PV +D + A HQG+A+E Sbjct: 97 ASVPITRVFMAVSAQSDDRLGAVVRRAALLGAPVLETTKLDLDALTD-SATHQGVAIEVP 155 Query: 120 PLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 T A+ ++ LL+ LD V DPHN+GA+LRSA AF DG+I +R S Sbjct: 156 AYEYTTARDLLERAHALGHTPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSVGV 215 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIAL 231 +A + K ++GA + R +NL L+++ G +GL +E D + L Sbjct: 216 NATVWKVSAGAAARVRVARETNLVRTLEQLKKEGCFVVGLDGSGSTAVEDLTLADSPLVL 275 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + GAEG GL +ET +A + + +++LN + A ++LY + Sbjct: 276 VTGAEGAGLSRLVRETCDVLASVPISRSVESLNAAVATGISLYEVDRLRRR 326 >gi|311113269|ref|YP_003984491.1| RNA methyltransferase [Rothia dentocariosa ATCC 17931] gi|310944763|gb|ADP41057.1| RNA methyltransferase [Rothia dentocariosa ATCC 17931] Length = 314 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 63/317 (19%), Positives = 117/317 (36%), Gaps = 50/317 (15%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MNL+ + S + S + H ++R + + + R ++ + + G V A Sbjct: 1 MNLLERISSPTVMS--NPHADRVR-------DIAKLSTR-RGRAKKKQFMVEGPQAVREA 50 Query: 61 LNNPSR--KIFQLLATKNALAR---LDWDANLPHPFP---------VKTVPPQTIDKIVG 106 L + + + T++A R + H P ++ V + + + Sbjct: 51 LKAHLQSPVLDAVYVTESAYERHPDIAELLEQAHGTPTPEEGRRVFMRVVTDEVLAAMAD 110 Query: 107 KEAVHQGLALETAPLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 +A+ S ++ N +L+ VL + DP N G ILR A A D +I Sbjct: 111 SVTPQGIIAISFMVDTSFSVLWGENALNPKLIAVLSRIQDPGNAGTILRVADAAGADLVI 170 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ- 222 TTK + +S +G+L H+P I+ L + + + S G + L+ Sbjct: 171 TTKGSVDLYNPKTVRSTAGSLFHVPIIQGVELEEFAEDVKSQGTVVLAADGYGTVNLQDL 230 Query: 223 ----------------------EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + G E +GL + + AT + + G Sbjct: 231 IDHAAVLRAGLDGEAPAGVKGAFDLSRPTMWLFGNEAQGLSAEEKSAATMRIAVPVYGAA 290 Query: 261 KALNVSNAAAVALYITQ 277 ++LNV AAA+ LY + Sbjct: 291 ESLNVGTAAAICLYASA 307 >gi|317123375|ref|YP_004097487.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM 43043] gi|315587463|gb|ADU46760.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM 43043] Length = 288 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 87/273 (31%), Gaps = 19/273 (6%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL----- 78 ++ K + + + R + + G + AL+ L + Sbjct: 11 SPSNPRLKALVALRR-RRVREETGQTIVEGHEEIRLALDAGVTP-RTLYVAEELFSPSGR 68 Query: 79 --------ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL--LSPTLDA 128 + + + P K+ +E GL + +L Sbjct: 69 AGSQEIGTQPELVERLRAAGVEIVRLSPAAYAKVSYREG-PDGLLAVVDDVGVPLASLTV 127 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 S L +V + P N+GA+LR+A A D ++ AS Sbjct: 128 DGPSWLGLVAQRIEKPGNLGAMLRTADAAGVDAVVAAD-PVTDWGNPNVVRASKGTLFAV 186 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + ++ L + + + ++ + ++A+ +G+E G+ A Sbjct: 187 PVASGTTSETLAWLAHGAVTLVVTTPETDLLHTEVDYTGRVAIAVGSEKHGVDDALLVAA 246 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 T + M G +LNVS AAAV LY A Sbjct: 247 THRVRIPMHGRANSLNVSVAAAVVLYEAVRQRA 279 >gi|254446967|ref|ZP_05060434.1| tRNA (guanosine-2-O)-methyltransferase [gamma proteobacterium HTCC5015] gi|198263106|gb|EDY87384.1| tRNA (guanosine-2-O)-methyltransferase [gamma proteobacterium HTCC5015] Length = 225 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 1/161 (0%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 R + L +V+++V+ PHN AI+RS A + Sbjct: 6 HQRFIDTLKRRQTSLTVVMENVHKPHNFSAIVRSCEAVGVHRAHAVY-PEGGIGNNAGTT 64 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 + T Q ++ + A+++G+E G Sbjct: 65 VGAHKWVQVDTHRNIQTPFQQLKAQGFQLLTAHLDETAVDFREVDYTQPTAVVMGSELHG 124 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + A + M G+ ++LNVS A A+ L+ Q Sbjct: 125 ISEEAAQLADHSIVIPMLGLTESLNVSVATALILFEAQRQR 165 >gi|332532739|ref|ZP_08408613.1| tRNA (guanosine18-2'-O-) -methyltransferase [Pseudoalteromonas haloplanktis ANT/505] gi|332037766|gb|EGI74216.1| tRNA (guanosine18-2'-O-) -methyltransferase [Pseudoalteromonas haloplanktis ANT/505] Length = 228 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 1/167 (0%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSES 173 +T + + R + L + L+ V+ HN+ AI+RSA A C + + Sbjct: 1 MQQTRYQRIEDVLSRRQTDLTVCLEDVHKHHNLSAIVRSADAVGCHHVHAVWPEKQKWLT 60 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + + LE + I + A+++ + S+ + A+I+ Sbjct: 61 NNTSGGSKNWLETHLHRNIDDAVTAMRERNPEIQILATHLSEDAVDFREVDYTKPTAIIV 120 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G E G+ K E A + M G++++LNVS AAA+ L+ Q Sbjct: 121 GQEKTGISEKALEYADQNIIIPMQGMVQSLNVSVAAALILFEAQRQR 167 >gi|254245541|ref|ZP_04938862.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia PC184] gi|124870317|gb|EAY62033.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia PC184] Length = 106 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 34/56 (60%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +AL++GAEG+G+R T++T + + M G +++LNVS A+ V LY Sbjct: 47 LDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 102 >gi|254823193|ref|ZP_05228194.1| hypothetical protein MintA_24909 [Mycobacterium intracellulare ATCC 13950] Length = 281 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 98/252 (38%), Gaps = 6/252 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ S + GV V L + LL T L L D Sbjct: 21 DFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFHP-HALLGTDRRLTELKDDLAGS 79 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + ++VG LA + + ++ + VL+ VND N+G Sbjct: 80 T-VPFYRTSADIMARVVGFHLNRGVLAAARRVGEPSVAEVIAGARTVAVLEGVNDHENLG 138 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +I R+A D ++ + + + G +PY R + L + GF+ Sbjct: 139 SIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYARATCWPAELMTLKENGFR 198 Query: 209 TIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + ++ + +++A+++GAEG GL P T + + M +LN Sbjct: 199 LLAMTPHESACPLAEAMTAARGERVAVLVGAEGPGLTPATLRCSDVRVRVPMSRGTDSLN 258 Query: 265 VSNAAAVALYIT 276 V+ AAA+A Y Sbjct: 259 VATAAALAFYER 270 >gi|229136938|ref|ZP_04265565.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26] gi|229194482|ref|ZP_04321285.1| tRNA/rRNA methyltransferase [Bacillus cereus m1293] gi|228588948|gb|EEK46963.1| tRNA/rRNA methyltransferase [Bacillus cereus m1293] gi|228646476|gb|EEL02683.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26] Length = 198 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 97/196 (49%), Gaps = 9/196 (4%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHN 146 + P + +D++V E HQG+ + A L+ ++LD + DPHN Sbjct: 2 QHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHN 59 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G+I+R+A A GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G Sbjct: 60 LGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERG 119 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G + K I L++G+EGKG+ E + L M G + +LN S Sbjct: 120 LWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNAS 179 Query: 267 NAAAVALYITQNHFAK 282 AA++ +Y + Sbjct: 180 VAASLLMYEVYRKRNE 195 >gi|32475172|ref|NP_868166.1| spoU rRNA methylase family protein [Rhodopirellula baltica SH 1] gi|32445713|emb|CAD78444.1| spoU rRNA methylase family protein [Rhodopirellula baltica SH 1] Length = 281 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 105/268 (39%), Gaps = 14/268 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP----SRKIFQLLATKNALARL 81 + +++ S ++SR + + G A+ + + +++A Sbjct: 14 QNAAVRRIVSL-RRSRKRRAAGVVLVDGPRESLRAIEAGLKLTAFYEIEPKLSESAGPPD 72 Query: 82 DWDANLPHPFPV-----KTVPPQTIDKIVGKEAVHQGLALETAPLL--SPTLDAVRNSQ- 133 + + + + V + KI + + +A AP L+ + Sbjct: 73 MPEQAVARQHAIDSGVHRWVTSEVFRKIAYTASTDRCVAEFVAPDDSLEQLLERSSWNDG 132 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++VLD V P N+GA+ RSA A ++ + S + + + GA+ +P S Sbjct: 133 LILVLDRVEKPGNLGAVFRSADAAGVSAVLLSDCPSDRFNPNAIRGSLGAVFTVPSASGS 192 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + G++ + + +PL K+A++LG+E GL + + Sbjct: 193 ES-QMEAFLKTHGYRVAAMRVEGSRPLFDSDLRGKVAVVLGSEADGLADRWAGDSIDPVA 251 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281 L M G + +LNVS +AA+ + + Sbjct: 252 LPMAGHVDSLNVSVSAAIVAFEAVRQRS 279 >gi|11499975|ref|NP_071221.1| rRNA methylase, putative [Archaeoglobus fulgidus DSM 4304] gi|3915500|sp|O30272|Y2399_ARCFU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase AF_2399 gi|2650693|gb|AAB91264.1| rRNA methylase, putative [Archaeoglobus fulgidus DSM 4304] Length = 224 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 9/226 (3%) Query: 54 VHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 V+++ AL +N + P+ + V Sbjct: 6 VNSIKEALLEGKVVRIYHSGERNPKISEILEIARKKGVPIYRKDGERFSAEVSPIKYAD- 64 Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 A+ ++ LD+V D NIGA +R+A F G++ KR S Sbjct: 65 -------FEFIVKKALTGGSFILFLDNVVDQRNIGACIRTAEFFGAAGVVLPKRRVGSIQ 117 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 K+++GA+ HIP R+ N A++K+ GF T+ D + + A+++ Sbjct: 118 EGAVKASAGAVFHIPIARVENFASAIKKLKKLGFTTLAADLDGEDLEAVSLL-LPAAVVI 176 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 G E +G+ ++ + + G + +LN+S AA + LY Sbjct: 177 GGEDRGVSRPVKKQCDFVVKIPGVGKVNSLNLSVAAGIFLYTLSRQ 222 >gi|271501802|ref|YP_003334828.1| tRNA/rRNA methyltransferase SpoU [Dickeya dadantii Ech586] gi|270345357|gb|ACZ78122.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech586] Length = 380 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 89/244 (36%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + + R + V + Sbjct: 136 RRQRAEETRVYGENACQALFLSRPEAIVRGWFLQEVTPRFREALRWMAANRKAYHVVEDE 195 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + + G E H G+ L + ++ L+ V +PHN+G I+RS Sbjct: 196 ELARASGTE-HHGGVCFLIKKRRGLDVTAYLREAGETDCVLALEDVGNPHNLGGIMRSCA 254 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ S ES ++A G EH+ I L DAL + + G+ + SS Sbjct: 255 HFGVKGVLV-NDASQLESGAAVRTAEGGAEHVKAISAEGLVDALAQFRAAGYTIVTTSSH 313 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L Q K ++LG EG GL + + G +++LN+S A + L Sbjct: 314 KGTTLSQVSLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIDGTGNVESLNISVATGILLAE 373 Query: 276 TQNH 279 Sbjct: 374 WWRQ 377 >gi|168232176|ref|ZP_02657234.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472133|ref|ZP_03078117.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458497|gb|EDX47336.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333582|gb|EDZ20346.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 345 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ + ++ L+ V +PHN+G ++RS Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I ++ D L G+ + SSD Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L +K+ L+LG E L +E ++ G +++LNVS A V L Sbjct: 279 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPGDLCVKINGTGNVESLNVSVATGVLLAE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|238793926|ref|ZP_04637545.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia intermedia ATCC 29909] gi|238726693|gb|EEQ18228.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia intermedia ATCC 29909] Length = 364 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 88/245 (35%), Gaps = 9/245 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V + Sbjct: 118 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEEE 177 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154 + K G E H G+ + Q ++ L+ V +PHN+G I+R+ Sbjct: 178 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMRTC 236 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F +G++ + + ES ++A G EHI I + L G+ + SS Sbjct: 237 AHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 295 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + K+ L+LG E GL + + G +++LNVS A + L Sbjct: 296 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLA 355 Query: 275 ITQNH 279 Sbjct: 356 EWWRQ 360 >gi|148377309|ref|YP_001256185.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2] gi|148291355|emb|CAL58738.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2] Length = 233 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 5/228 (2%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G ++V A+ I + + + + + Sbjct: 8 GKNSVIDAIKA-KLPIEAVYVLSKS---HADKLKEFSNIKIVVKDASFFKEYNSENHQGY 63 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 L L+ + N + +++LDH++DPHN GAI+R+A A II K S Sbjct: 64 LLFLKDFNYYEIDVIKKDNPKTVLILDHIHDPHNFGAIIRTANAAGIKHIIIPKDRSTDV 123 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDKIAL 231 ++ + K +SG + I++SN+ +++K+ W + L ++ P + AL Sbjct: 124 TSTVLKVSSGGFVGVKIIKVSNIASSIEKLKKWGFWIYSSLLDENAVPYNKVQYAGNCAL 183 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++G E KG+ ++ G ++++NVS A + L+ N Sbjct: 184 VVGNEEKGISKPVVNATDVKVYIPQFGTVQSMNVSVATGILLFELVNR 231 >gi|261414903|ref|YP_003248586.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371359|gb|ACX74104.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325885|gb|ADL25086.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter succinogenes subsp. succinogenes S85] Length = 371 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 59/295 (20%), Positives = 112/295 (37%), Gaps = 26/295 (8%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKS---RHTSQPENLF-------------LYGVHTV 57 S DS + + ++F ++ + + EN + G+ V Sbjct: 76 SRFDSDRPSFGDRPKRIEGERNFGERREFDKSRANQENFVPAVGDADAAPQVAVGGIKEV 135 Query: 58 SAAL-NNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGK------- 107 L NP + L K+ +L L V+ V + +D Sbjct: 136 EELLNKNPLQVHRVLFMHKSGNPKLYELQKLAKRAHVHVQQVDSKILDSYARPNHGVVAL 195 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + L +L+ V ++ DP N+GA +RS++A D ++ + Sbjct: 196 MNEKELLNWMDVREEFFKARDTGEKKLIAVATNIEDPRNLGACIRSSLALGVDILLLPAK 255 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + +A++++GALE + R NL A+ ++ G+Q +GL +D++ L D Sbjct: 256 GMCGITPSVARTSAGALEKLRICRPDNLEGAIGELKMAGYQILGLDADTETNLAGFDFAD 315 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + L +G E GL P ++ ++ + M + N S A ++ LY K Sbjct: 316 HVVLAVGGEDVGLPPFIKKQCDAVLRIPMKPEAHSYNASVALSLGLYEYARLRIK 370 >gi|225011630|ref|ZP_03702068.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-2A] gi|225004133|gb|EEG42105.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-2A] Length = 239 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 95/259 (36%), Gaps = 26/259 (10%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 + +N R K++ QK ++ G + L+ ++ + + Sbjct: 2 VSKNQR--KQILQLKQK-KYRLSTGLFVAEGEKVIEELLSASWDCVYLFSIAPHFHPQS- 57 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + + P + ++ + L + SP L A+ S + + +D V+ Sbjct: 58 -----------EVIDPSVMKQLTHFKTPSPVLGVF----KSPDLKALSKSNITLAVDGVS 102 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ++R + +I + ++ + +++ G++ + + +L L + Sbjct: 103 DPGNLGTLIRICDWYGLSDLICSSNTVDCYNSKVVQASMGSIVRVQCHYVDDLHSTLINL 162 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---GI 259 + + + + + L + ++ + + G+E GL + + Sbjct: 163 NKPIY----GADLNGQSLYKTDFEEQASFVFGSESHGLSAAVSKIINHKITIPNFRSGRG 218 Query: 260 IKALNVSNAAAVALYITQN 278 ++LNV+ A A+ L Sbjct: 219 AESLNVAVAGAIFLSEIFR 237 >gi|116624472|ref|YP_826628.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus Ellin6076] gi|116227634|gb|ABJ86343.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus Ellin6076] Length = 276 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 10/257 (3%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K ++ T + H + AL++ + +LA+++A LD + Sbjct: 25 NPLLKDVRRAISHGALT-EQGWCVAETPHLLEEALHSQCE-VKTVLASESA---LDGASA 79 Query: 87 LPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 P+K V P + + QG+ P + L++VLD + DP Sbjct: 80 HLRSLPLKLVSLPDALFAGIAGTETTQGVIALVQPPAWKLEQLFQRPALVVVLDGLQDPG 139 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMH 203 N G I+R+A AF G++ K + ++++G+L +P++ + + H Sbjct: 140 NAGTIVRAAEAFGATGVVFLKGAVSPYNPKTLRASAGSLFRVPFLHGVDAAVACTALAQH 199 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + S + L L++G E G+ + A + G +++L Sbjct: 200 QVELFAGVPAGASSRTLAAVDLARPCGLVIGNEAHGVSRGLRAAAHD-VSIPTVG-VESL 257 Query: 264 NVSNAAAVALYITQNHF 280 N + AA++ LY + Sbjct: 258 NAAMAASILLYEARRQR 274 >gi|194445716|ref|YP_002041915.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404379|gb|ACF64601.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 345 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ + ++ L+ V +PHN+G ++RS Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I ++ D L G+ + SSD Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L +KI L+LG E L +E ++ G +++LNVS A V L Sbjct: 279 RGQALFSTTLPEKIVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|169824566|ref|YP_001692177.1| 23S rRNA methyltransferase [Finegoldia magna ATCC 29328] gi|167831371|dbj|BAG08287.1| 23S rRNA methyltransferase [Finegoldia magna ATCC 29328] Length = 256 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 103/267 (38%), Gaps = 18/267 (6%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I LK + +++ YK ++S +K ++ + + G A+ + + Sbjct: 5 IRLLKQAIKMITSTSNKIYKHVKSLYKK-KYRQKYNEFVIEGYKLYQEAIKSNLNIKQVI 63 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131 + +T + + +G+ + + + + + Sbjct: 64 IREGENFLDE-----------CVYFDSKTFNSLSEM-NNPEGIICVVSFIEQKDVKSDQ- 110 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++ L+++NDP N+G I+RSA AF + I+ + ++ +SA G+L I Sbjct: 111 ---ILFLENINDPGNLGTIIRSAEAFGYNKIVLSNNSCDIYNSKTIRSAMGSLFR-MNIS 166 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 N+ + + + + + +K LI+G E G+ + ++ A Sbjct: 167 YENINVLEKYKSKGFKIYETSLEKNSRSILEIKNKEKHVLIIGNEANGISDEIKKYADEF 226 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQN 278 + M + ++LN S AA+++++ Sbjct: 227 LIIPMDNVTESLNASIAASLSMFYLSK 253 >gi|238784486|ref|ZP_04628495.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia bercovieri ATCC 43970] gi|238714655|gb|EEQ06658.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia bercovieri ATCC 43970] Length = 363 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 117 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 176 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154 + K G E H G+ + Q ++ L+ V +PHN+G I+R+ Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMRTC 235 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F +G++ + + ES ++A G EHI I + L G+ + SS Sbjct: 236 AHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 294 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + K+ L+LG E GL + + G +++LNVS A + L Sbjct: 295 HKGVTLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLA 354 Query: 275 ITQNH 279 Sbjct: 355 EWWRQ 359 >gi|308187856|ref|YP_003931987.1| hypothetical protein Pvag_2365 [Pantoea vagans C9-1] gi|308058366|gb|ADO10538.1| hypothetical protein Pvag_2365 [Pantoea vagans C9-1] Length = 394 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 88/243 (36%), Gaps = 6/243 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQT 100 + E +YG + A + I + + R L V Sbjct: 151 RRQRNEETRVYGENACQALFQSRPEAIVRAWFVQEVTPRFREALRWLAANRKAYHVVEDA 210 Query: 101 IDKIVGKEAVHQGLALETAPLLSP----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 H G+ + L ++ L+ V++PHN+GAI+RS Sbjct: 211 EITKASGTEHHGGVCFLIKKRMGMAVSEWLSQANTKDCVLALEDVSNPHNLGAIMRSCAH 270 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F G++ S ES ++A G EH+ I + ++ L+ G+ + SS Sbjct: 271 FGVKGLLV-NDASLLESGAAVRTAEGGAEHVQAISGATFSEGLEAFRKAGYTIVTTSSHQ 329 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 PL Q +K+ L+LG E +GL + + G +++LNVS A V L Sbjct: 330 GTPLAQAQLPEKMVLVLGQEREGLSDTAFKQGDMSLSIGGTGNVESLNVSVATGVLLAEW 389 Query: 277 QNH 279 Sbjct: 390 WRQ 392 >gi|294673532|ref|YP_003574148.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23] gi|294471919|gb|ADE81308.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23] Length = 246 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 84/254 (33%), Gaps = 17/254 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + K + Q G V L QL AT Sbjct: 6 QIKFVHQLELK-KFRKQEGLFIAEGHKVVGDLLKAGYTP-KQLFATAEW-------IAAN 56 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V + K+ ++ Q LAL P QL ++LD+V DP N+G Sbjct: 57 PVAGAIEVTNDELTKLSLQQHPQQVLALFPIPTPQH--QTPSTQQLSILLDNVQDPGNLG 114 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F D I ++ + + + ++ G++ + I I + + Sbjct: 115 TIIRIADWFGIDTIFCSEGTVDAWNPKVVQATMGSIARVHLIYIDTMQLLDSLPKDFPVY 174 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---GIIKALNV 265 L ++ E + + +++G EG G+ + T + +LNV Sbjct: 175 GTFLDGENIYTQE---LSQQGLIVMGNEGNGISDAVRARVTHKLLIPDFHKGPTADSLNV 231 Query: 266 SNAAAVALYITQNH 279 + A A+ + Sbjct: 232 AIATAITCSEFRRR 245 >gi|218247018|ref|YP_002372389.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801] gi|257060094|ref|YP_003137982.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC 8802] gi|218167496|gb|ACK66233.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC 8801] gi|256590260|gb|ACV01147.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC 8802] Length = 152 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 1/150 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL H P N G I R+ A + + L ++ ++ Sbjct: 1 MLKIVLVHPQIPPNTGNIARTCAATETELHLVGPLGFELSDRYLKRAGLDYWPYVNLHYH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +L + + IG S + P Q + L+ G+E +GL E + Sbjct: 61 KDLAEFYSVYQQHTGRLIGFSVRGQSPYHQWTFQENDWLLFGSETEGLPKSVLENCDATL 120 Query: 253 HLHMP-GIIKALNVSNAAAVALYITQNHFA 281 ++ M +++LN+S + + L+ + + Sbjct: 121 YIPMSQSKVRSLNLSVSVTIGLFEARRQLS 150 >gi|262182925|ref|ZP_06042346.1| hypothetical protein CaurA7_02930 [Corynebacterium aurimucosum ATCC 700975] Length = 273 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 91/250 (36%), Gaps = 9/250 (3%) Query: 41 RHTSQPENLFLYGVHT-VSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 +H + F++G L + ++ + L + ++ PV V Sbjct: 20 KHADKSGEGFVFGEGPLCVERLLASRFPVRCIIGFEGKLDTFLANHDV-GDIPVYQVTRA 78 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 T+ ++ G + +A + + ++ L +++ V D NIG++ R+A Sbjct: 79 TLGEVTGFDMHRGLVAAADRAEAWTVDEVIEGARTLAIMEGVGDHENIGSLFRNAAGMDV 138 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 DGI+ + + + G + +P+ R Q+ + Sbjct: 139 DGILLGSGAADPLYRRSVRVSMGHVLRLPWARFDGGFTTWQRGLEQLREKGFRLVSLTPH 198 Query: 220 LEQEIKND------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + D K+AL++GAEG GL A + M +LNV+ +AA+A Sbjct: 199 PDAVHIADALEGADKVALLVGAEGPGLTEHAMRATNVRARIPMAEGTDSLNVATSAAIAF 258 Query: 274 YITQN-HFAK 282 Y Q + Sbjct: 259 YERQRSQRLR 268 >gi|54025800|ref|YP_120042.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] gi|54017308|dbj|BAD58678.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] Length = 278 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 90/271 (33%), Gaps = 11/271 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALA 79 ++ + + Q++ + + GV ++ AL L L+ Sbjct: 3 RRVSTRNASVQVWQAYLTNRTKRHRDRRFLVQGVRPITQALAAGWPLETLLYRLGGPELS 62 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKI-----VGKEAVHQGLALETAPLLSPTLDAVRNSQL 134 P+ + P+ + + E V ++ + + ++ + Sbjct: 63 GWARQILDTTDVPLVGLVPELMADLGEKTEAAPELVAVAVSRQPELAEFAPGEPGEDAPV 122 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-----LEHIPY 189 ++V D N P N+G ++RSA +F ++ T + ++++G+ + +P Sbjct: 123 VVVFDRPNSPGNLGTLIRSADSFGAAAVVVTGHGADQYDPRAVRASTGSLFAVPVFRVPG 182 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 Q +G + D L++G E G+ Q+ Sbjct: 183 PAQVLEFRDRQIARGIPTTVVGTDEHGTAAVFDHDFRDATILVIGNETSGMSAAWQDACD 242 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G +L +A AVALY Sbjct: 243 ELVAIPMGGTASSLGAPSAGAVALYEISRQR 273 >gi|307128548|ref|YP_003880578.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri CARI] gi|306483010|gb|ADM89880.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri CARI] Length = 260 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 45/254 (17%), Positives = 101/254 (39%), Gaps = 5/254 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + ++ + ++ + + G+ + AL + L+ N + + ++ +N Sbjct: 8 NNIFQYFYKLQKIKKNILLNNSFSVEGLKEIKMALIANYIPEYILIY--NKICKYEFISN 65 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 + KI ++ +A L+ + S L ++L+ + P N Sbjct: 66 FF--IKKYMITSFIYKKISYRKKTGGIIASFFKKKLNIKNIKISLSALFLILEGIEKPGN 123 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKMHSW 205 +GAILR+A A D I+ + + +S+ G + + + + + Sbjct: 124 LGAILRTADAVGIDAILLCNNKVDIFNPNVIRSSLGTIFTNKIVIANYKIIISWLNKNKI 183 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + ++ ++IK +A+I+G+E KGL + +M ++ + G I +LNV Sbjct: 184 KIISTSVNKIYNNFFMKKIKKKSLAIIIGSESKGLSDIWFKNKKNMINIPIKGKIDSLNV 243 Query: 266 SNAAAVALYITQNH 279 S + A+ LY Sbjct: 244 STSTAIILYEILRQ 257 >gi|284053209|ref|ZP_06383419.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira platensis str. Paraca] gi|291570564|dbj|BAI92836.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis NIES-39] Length = 153 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 59/146 (40%), Gaps = 1/146 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL + P N G I R+ A + L ++ ++P +++ Sbjct: 4 LVLVNPQIPQNTGNIARTCAATQTPLHLVGPLGFEISDRYLKRAGLDYWPYVPLKYHTHI 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 D G + +G S+ K+ + L+ G+E +GL P+ + ++ Sbjct: 64 EDFRAFHQPLGGRWVGFSARGKQNYVSFPFQENDWLLFGSETEGLPPEVLALCQATVYIP 123 Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280 M +++LN+S +AAV L+ + Sbjct: 124 MSQPNVRSLNLSVSAAVGLFEARRQL 149 >gi|224084459|ref|XP_002307305.1| predicted protein [Populus trichocarpa] gi|222856754|gb|EEE94301.1| predicted protein [Populus trichocarpa] Length = 359 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 85/286 (29%), Gaps = 30/286 (10%) Query: 19 HYAKL-RRNHRDYKKMQSFNQKSRHTSQPENLFLYG-------VHTVSAALNNPSRKIFQ 70 H + ++ K Q S + + + G +H +L R + Sbjct: 70 HVKSITSTSNPFVKHCLKLQQNSSYRHSHASALVVGSTPIRWEIHRSQESLK--ERTVEL 127 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH----------QGLALETAP 120 A + + V V + K+ ++ Sbjct: 128 EYLLLLDEAEVSQVLDDKSSARVVRVSSVVMKKLSQLQSTESVDAIALMKFPTTYFVVDN 187 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV----- 175 + + ++VL+ + DP N+G +LRSA+A G+ ++ Sbjct: 188 HQDCSRKWFPSPHRILVLEGIQDPGNLGTLLRSALALGWGGVFLLPGCCDPFNSKVLRAS 247 Query: 176 ----LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + + H S + L + L Sbjct: 248 RGASFQIPIVSGSWYHLEALKDEYQMKMLAGHPDCNDKSRPVSQLSQGLADCFARVPLCL 307 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +LG+EG GL K Q + + M G ++LNV+ A + LY+ Q Sbjct: 308 VLGSEGHGLSEKAQREC-ELLSIPMAGEFESLNVAVAGGIFLYMLQ 352 >gi|188586434|ref|YP_001917979.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351121|gb|ACB85391.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus JW/NM-WN-LF] Length = 269 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 95/247 (38%), Gaps = 10/247 (4%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQ 99 + + + L G + AL++ + F L + + + D L P +V P Sbjct: 22 RQEYQLVPLEGSLLIKEALHSGVKFDFVLYSADQEVINANEDLLLEIHNQQIPAYSVDPS 81 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + + QG+ + +++L V DP N+G ++RSA AF Sbjct: 82 -LFQKTAFTETPQGILAVCTFNEGDLESLTSEKKDILILYQVQDPGNMGTLIRSADAFGF 140 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G++ +K + + +S+ G+L HIP + S + Q + + + KP Sbjct: 141 QGVVCSKGCVDPTNDKVVRSSMGSLFHIPVVMNSEIDQLFQVLQREQYFILFGDKSGSKP 200 Query: 220 LEQEIK-NDKIALILGAEGKGLRPKTQETA-----TSMAHLHMPGIIKALNVSNAAAVAL 273 + N +AL +G E +GL+ + + M G ++LN A ++ + Sbjct: 201 IMTIDLSNTAVALFVGNESRGLQDLNFDQKFNQVRHQKVEIPMFGKAESLNAGIAGSIMM 260 Query: 274 YITQNHF 280 Y Sbjct: 261 YELSKKR 267 >gi|254229032|ref|ZP_04922453.1| rRNA methylases [Vibrio sp. Ex25] gi|151938500|gb|EDN57337.1| rRNA methylases [Vibrio sp. Ex25] Length = 268 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 94/249 (37%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L + S K+ + AT+ L+ +A+ Sbjct: 32 KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LASSSLKVKHVFATEAF---LEQNASALSG 86 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K + + A + P++ + L++ LD V+DP N+G I Sbjct: 87 FDCIEASLDDLTKASTLVSNNA----AIAVVEIPSVKVPQAKGLMIALDGVSDPGNLGTI 142 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II + + + + G+ + + + + + Sbjct: 143 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQVSLVDLPSYLEEANLPVYGAFL 202 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K + L++G+E G+R + + T+ + G ++LNV+ A Sbjct: 203 EGESVHK-----TEFAAEGILLMGSESHGVREEAAKLVTNKITIPAFGGAESLNVAMATG 257 Query: 271 VALYITQNH 279 + L + H Sbjct: 258 IILDNMRRH 266 >gi|262394780|ref|YP_003286634.1| RNA methyltransferase TrmH family [Vibrio sp. Ex25] gi|262338374|gb|ACY52169.1| RNA methyltransferase TrmH family [Vibrio sp. Ex25] Length = 244 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 94/249 (37%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L + S K+ + AT+ L+ +A+ Sbjct: 8 KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LASSSLKVKHVFATEAF---LEQNASALSG 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K + + A + P++ + L++ LD V+DP N+G I Sbjct: 63 FDCIEASLDDLTKASTLVSNNA----AIAVVEIPSVKVPQAKGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II + + + + G+ + + + + + Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQVSLVDLPSYLEEANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K + L++G+E G+R + + T+ + G ++LNV+ A Sbjct: 179 EGESVHK-----TEFAAEGILLMGSESHGVREEAAKLVTNKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + H Sbjct: 234 IILDNMRRH 242 >gi|320157988|ref|YP_004190366.1| RNA methyltransferase, TrmH family [Vibrio vulnificus MO6-24/O] gi|319933300|gb|ADV88163.1| RNA methyltransferase, TrmH family [Vibrio vulnificus MO6-24/O] Length = 244 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 90/249 (36%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N + K+ Q+ AT L + + Sbjct: 8 KLLRALGQK-KQRKALGLFLVQGEKNVLE-LANSTLKVKQVFATAEFLQQHAVELA---G 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + + K + + A + P ++ + L++ LD V+DP N+G I Sbjct: 63 YECIEASLDDLTKASTLVSNNA----AIAVVEIPAIETPKAQGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + I+ + + + + G+ + + + Q + Sbjct: 119 IRVADWYGIKHIVASSDCADPYNPKTISATMGSFGRVQVSLVDLPSYLEQANLPIYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S + + L++G+E G+R + + T + G ++LNV+ A Sbjct: 179 EGESVHNMT-----FSAQGILLMGSESHGVREQASKFVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNIRRQ 242 >gi|302530537|ref|ZP_07282879.1| RNA methyltransferase [Streptomyces sp. AA4] gi|302439432|gb|EFL11248.1| RNA methyltransferase [Streptomyces sp. AA4] Length = 276 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 8/258 (3%) Query: 25 RNHR---DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81 R H D++ + + +++ + G V L + + LL + L L Sbjct: 13 RAHPGLDDFRDLSTADRRPDRPGGRGLVIAEGTVVVGRLLASRY-PVRALLGVERRLREL 71 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + + P +T+ +VG LA+ P V +Q+L VL+ V Sbjct: 72 EDELA-GVDVPAYVTSAETMADVVGFHLNRGVLAVADRPEPPTVSQIVDGTQVLAVLEGV 130 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 D N+GA+ R+A A G++ S + + G + +P+ + L Sbjct: 131 GDHENLGALFRNAAALGVGGVLLGPGCSDPLYRRSVRVSMGHVLRVPFATFDSWPGGLDV 190 Query: 202 MHSWGFQT---IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + + GF + +E IAL+LGAEG GL + E A + M Sbjct: 191 LRARGFTVAALTPRADSVPLRGLREKVPGPIALLLGAEGPGLTDEAIEAADVAVRVEMVS 250 Query: 259 IIKALNVSNAAAVALYIT 276 + +LNV+ AAA+A + Sbjct: 251 GVDSLNVATAAAIAFHEV 268 >gi|269114836|ref|YP_003302599.1| tRNA/rRNA methyltransferase [Mycoplasma hominis] gi|268322461|emb|CAX37196.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114] Length = 230 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 56/229 (24%), Positives = 106/229 (46%), Gaps = 12/229 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++G ++V A+ I ++ K + N V + ++DK+ + Sbjct: 4 IVFGKNSVLEAIEY-EFPIEEIYLQKGLVN------NNLKFKKVVYLDRNSLDKLT-ENG 55 Query: 110 VHQGLALETAPLLSPTL--DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 HQG A + L S +++LDH+ DP N GAI+RSA F II K Sbjct: 56 NHQGYAAKLKDFQYHDLGSIFKDGSDKVLILDHIQDPQNFGAIIRSANVFGFKHIIIPKD 115 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIKN 226 + + + K++SG +++ I++++L DA+++ + + + K L N Sbjct: 116 RACDVTPSVLKTSSGGFKNVKVIKVNSLFDAIEELKNKGFWIYASALNQQAKKLNDAKFN 175 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKALNVSNAAAVALY 274 +KIA+I+G EG G+ + + + ++ +++LNVS A + LY Sbjct: 176 EKIAIIVGNEGSGVSKTLLKHSDEIIYIEQDKESVQSLNVSVATGILLY 224 >gi|256823639|ref|YP_003147602.1| tRNA guanosine-2'-O-methyltransferase [Kangiella koreensis DSM 16069] gi|256797178|gb|ACV27834.1| tRNA guanosine-2'-O-methyltransferase [Kangiella koreensis DSM 16069] Length = 231 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 1/157 (0%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 TL + R L + +D V+ PHN+ AI+R+A A + + S S Sbjct: 14 TLLSNRQPDLTVFMDQVHKPHNLAAIVRTADAVGIGHVHAVFPEDVKFTGHHTSSGSKRW 73 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + SD+ L++G+E G+ + Sbjct: 74 VTTHKHSNLKS-GIAEMKAKGMQVLAAHFSDTAVDFRTIDYTQPTCLLVGSELVGVSDEA 132 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 E A + M G++++LNVS A A+ LY Q + Sbjct: 133 AEIADQHVIIPMVGMVQSLNVSVATALILYEAQRQRS 169 >gi|300778322|ref|ZP_07088180.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC 35910] gi|300503832|gb|EFK34972.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC 35910] Length = 241 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 92/248 (37%), Gaps = 21/248 (8%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K +QS ++K + + + G + N+ + L L R Sbjct: 6 TIKVLQSLDKK-KFRQKYNLFLVEGNKIICELFNSNFKVKEILSTDPQKLDR-------- 56 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV + + KI + A + + + +VLD + DP N+G Sbjct: 57 TDIPVTHISENELKKISFLKTP----KDSVAVCYLAEEKKLEDKNIQLVLDGIQDPGNLG 112 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + +I ++ + + ++ G+ + + + S Sbjct: 113 TIIRLADWFGIEQVICSEDTVDVYNPKVIQATMGSFTRVNVVYTDL-----VEYLSKTEN 167 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNV 265 + + + K +KI LILG EG G+RP+T++ + G ++LNV Sbjct: 168 VNIGTDMEGENIYTFEKPEKINLILGNEGNGMRPETEKLLQKSISIPRFGKSQSTESLNV 227 Query: 266 SNAAAVAL 273 S AA + L Sbjct: 228 SMAAGIIL 235 >gi|262165100|ref|ZP_06032837.1| RNA methyltransferase TrmH family [Vibrio mimicus VM223] gi|262024816|gb|EEY43484.1| RNA methyltransferase TrmH family [Vibrio mimicus VM223] Length = 244 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 93/249 (37%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L + + K+ + AT L AN+ Sbjct: 8 KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LASSTLKVQNIFATAEF---LAEYANVLAG 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + + K+ + + A + P+++ + L++ LD V+DP N+G I Sbjct: 63 YECTEAALDDLTKVSTLVSNNA----AIAVVEIPSIEVPKAQGLMIGLDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II ++ + + + G+ + ++ + + Sbjct: 119 IRLADWYGIQHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K + L++G+E G+R + + T + G ++LNV+ A Sbjct: 179 EGVSVHK-----TAFKAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNIRRQ 242 >gi|152967110|ref|YP_001362894.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans SRS30216] gi|151361627|gb|ABS04630.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans SRS30216] Length = 264 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 51/261 (19%), Positives = 93/261 (35%), Gaps = 18/261 (6%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--- 89 M+S +S S+ G V A+ + +L AT A R Sbjct: 1 MRSLTGRS-ARSRHGRFLAEGPQAVREAVAGGA--ALELYATAEAAQRYPEVLAAAATAG 57 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 V + + + +A+ + +L+ VLD V DP N G Sbjct: 58 GPRTWLVTDEVLAAMTDTVTPQGLVAVCPTTTSTLDDVLAARPRLVAVLDRVRDPGNAGT 117 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--------- 200 +LR+A A D ++ T+ + +S +G+L H+P + L DA+ Sbjct: 118 VLRAADAAGADAVVLTEGSVDPFNPKCVRSTAGSLFHLPVVVGVPLADAVTALRRAGSTV 177 Query: 201 ---KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 + ++ ++ A + G E GL + A ++ + + Sbjct: 178 LAADGEGDLDLDDLADAAARGVVDGVDLRRPTAWVFGNEAAGLDAAGRGLADAVVRVPLH 237 Query: 258 GIIKALNVSNAAAVALYITQN 278 G ++LN++ AA V LY + Sbjct: 238 GRAESLNLATAAVVCLYASAR 258 >gi|313836782|gb|EFS74496.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL037PA2] gi|314929810|gb|EFS93641.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL044PA1] gi|314972239|gb|EFT16336.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL037PA3] gi|328907668|gb|EGG27432.1| RNA methyltransferase, TrmH family [Propionibacterium sp. P08] Length = 279 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 9/243 (3%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY ++ + + G + A LLA + D L Sbjct: 16 ADYVSLRDVTLRKSLEVEHGLFIAEGAKVIRRACEAGYLPRSFLLAPRWIDGLRDLFDGL 75 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V V + + + V VH+G + + ++ L+V + + D N+ Sbjct: 76 --DVEVFVVS-EALAEQVTGFHVHRGALASMRRQTRWSAVDLMAARRLVVCEDIVDHTNV 132 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQK 201 GAI+R A DG++ R + K++ G + +P+ R+ + Sbjct: 133 GAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLDELRDHGF 192 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + G + + + KIAL++G EG GL A + + M G + Sbjct: 193 TVAAMAPSDGAVTLDEFSADLRQNPRKIALLMGTEGAGLSAHWISQADVVVRIPMAGGVD 252 Query: 262 ALN 264 +LN Sbjct: 253 SLN 255 >gi|159037501|ref|YP_001536754.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205] gi|157916336|gb|ABV97763.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205] Length = 296 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 91/244 (37%), Gaps = 8/244 (3%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI 101 G V AL P + +L T AL R PV TV + Sbjct: 37 EAAGRFLAEGPQAVREALARPHT-VLELFGTPAALDRHLDLVARATTADVPVSTVTDDAL 95 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + A +A+ L R +L+ VL + DP N G +LR+A A Sbjct: 96 AGLAETVAPQGLVAVCQHLDLPLATVLARTPRLVTVLAGIRDPGNAGTVLRTADAAGAQV 155 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG----FQTIGLSSDSK 217 ++ + + ++++G+L H+ +R S+ + + + G T + D Sbjct: 156 VVFAGAAVDPYNGKVVRASAGSLFHVDVVRASDPPQVITDLRAAGLAVLATTGYGADDLD 215 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A I G+E GL + A + + + G ++LN++ AAAV LY + Sbjct: 216 DLADAGRLAAPTAWIFGSEAHGLPDELTTAADARVRVPLHGRAESLNLAAAAAVCLYASA 275 Query: 278 N-HF 280 Sbjct: 276 RAQR 279 >gi|304398699|ref|ZP_07380571.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. aB] gi|304353910|gb|EFM18285.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. aB] Length = 394 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 88/243 (36%), Gaps = 6/243 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQT 100 + E +YG + A + I + + R L V Sbjct: 151 RRQRNEETRVYGENACQALFQSRPEAIVRAWFIQEVTPRFRESLRWLAANRKAYHVVEDA 210 Query: 101 IDKIVGKEAVHQGLALETAPLLSP----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 H G+ + L ++ L+ V++PHN+GAI+RS Sbjct: 211 EITKASGTEHHGGVCFLIKKRMGMAVSEWLSQATTKDCVLALEDVSNPHNLGAIMRSCAH 270 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F G++ S ES ++A G EH+ I + ++ L+ G+ + SS Sbjct: 271 FGVKGLLV-NDASLLESGAAVRTAEGGAEHVQAISGATFSEGLEAFRKAGYTIVTTSSHQ 329 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 PL Q +K+ L+LG E +GL + + G +++LNVS A V L Sbjct: 330 GTPLAQAKLPEKMVLVLGQEREGLSDTAFKQGDMSLSIGGTGNVESLNVSVATGVLLAEW 389 Query: 277 QNH 279 Sbjct: 390 WRQ 392 >gi|149919144|ref|ZP_01907628.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Plesiocystis pacifica SIR-1] gi|149820074|gb|EDM79495.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Plesiocystis pacifica SIR-1] Length = 287 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 98/248 (39%), Gaps = 13/248 (5%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 R + + G V L R + L+ T + ARL +A LP P +P + Sbjct: 38 RGRREDGRFIVEGALAVERLLEQAERFPVESLVCTPSHGARL--EAALPPGVPAFVLPRK 95 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-------LMVLDHVNDPHNIGAILR 152 I ++ G + LA P L+ L ++V + DP N+GA++R Sbjct: 96 RIAELAGFDFHRGVLACARRPPTRAVLEPWEIEALRRREQVTVVVASGLADPRNLGALIR 155 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP---YIRISNLTDALQKMHSWGFQT 209 +A AF D ++ R + + + + +++ G + +P + + L++ Sbjct: 156 NAAAFGVDWVVVDGRGADAFARLTIRASVGNVFRVPLLVSEALPATVEQLRRELPATVVA 215 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + + + + + +++G EG GL A + + ++NV+ A Sbjct: 216 ATPAGELELDALAVDRPARQIVLVGNEGAGLDEDALARADRRVRIPVVAGADSVNVAAAT 275 Query: 270 AVALYITQ 277 A+ LY + Sbjct: 276 AILLYALR 283 >gi|262341267|ref|YP_003284122.1| SpoU rRNA methylase family protein [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272604|gb|ACY40512.1| SpoU rRNA methylase family protein [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 267 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 43/261 (16%), Positives = 97/261 (37%), Gaps = 11/261 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + + K + +K + P + GV A+ + ++ + D Sbjct: 8 QNTEIKDLIKVYKKKNY---PNGFLVEGVKEFEMAIE-GNFLPQKIFICEKIFHEYDMIK 63 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL--DAVRNSQLLMVLDHVND 143 + + + K+ +E +A + L + + N+ L+++LD + Sbjct: 64 SYHTMT--CLISMKIFRKLAYRENSGGIIAFFREKSIIDKLINEKITNNSLILILDGIEK 121 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN---LTDALQ 200 P NIGA+LR+A A II + ++ + + + G++ ++ + Sbjct: 122 PGNIGAMLRTADAAGIHIIILCNMKTHIYNSNVIRCSLGSVFTRKIFIEKMGSIISWLQE 181 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 +K + ++ +A+I G+E KG+ A + + M G + Sbjct: 182 NKVKIVGTGFYNHQKAKNLYKTKLNYSNLAIIFGSENKGISNIWFNIANKIITIPMFGNV 241 Query: 261 KALNVSNAAAVALYITQNHFA 281 +LNVS+A ++ +Y Sbjct: 242 DSLNVSHAMSIIIYEIIRQRN 262 >gi|88861117|ref|ZP_01135751.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase) [Pseudoalteromonas tunicata D2] gi|88816839|gb|EAR26660.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase) [Pseudoalteromonas tunicata D2] Length = 229 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 1/152 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIP 188 R L + LD V+ HN+ AI+RSA A I ++ + + E+ Sbjct: 16 RQIDLTLCLDEVHKHHNLSAIVRSADAVGIHHIHSVWPEGGKRLTSSTSGGSKNWTENHI 75 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + + ++ S+ A+ILG E G+ + A Sbjct: 76 HHTVEDAIATIRSRTPNVQILATHFSEQAVDFRAIDYTRPTAIILGQEKFGISDQALALA 135 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS AAA+ LY Q Sbjct: 136 DQHIIIPMVGMVQSLNVSVAAAIILYEAQKQR 167 >gi|224584503|ref|YP_002638301.1| methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469030|gb|ACN46860.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|323130986|gb|ADX18416.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326628796|gb|EGE35139.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 349 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 105 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 164 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ + ++ L+ V +PHN+G ++RS Sbjct: 165 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 223 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I ++ D L G+ + SSD Sbjct: 224 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 282 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L +K+ L+LG E L +E ++ G +++LNVS A V L Sbjct: 283 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 342 Query: 276 TQNH 279 Sbjct: 343 WWRQ 346 >gi|213425263|ref|ZP_03358013.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 274 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 30 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 89 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ + ++ L+ V +PHN+G ++RS Sbjct: 90 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 148 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I ++ D L G+ + SSD Sbjct: 149 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 207 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L +K+ L+LG E L +E ++ G +++LNVS A V L Sbjct: 208 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 267 Query: 276 TQNH 279 Sbjct: 268 WWRQ 271 >gi|168468062|ref|ZP_02701899.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195628860|gb|EDX48274.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 345 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ + ++ L+ V +PHN+G ++RS Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I ++ D L G+ + SSD Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L +K+ L+LG E L +E ++ G +++LNVS A V L Sbjct: 279 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|197263980|ref|ZP_03164054.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242235|gb|EDY24855.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 345 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ + ++ L+ V +PHN+G ++RS Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I ++ D L G+ + SSD Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L +K+ L+LG E L +E ++ G +++LNVS A V L Sbjct: 279 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|16761506|ref|NP_457123.1| methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765968|ref|NP_461583.1| methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29140797|ref|NP_804139.1| methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62181223|ref|YP_217640.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161612632|ref|YP_001586597.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553664|ref|ZP_02347411.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994861|ref|ZP_02575951.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168245088|ref|ZP_02670020.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168823163|ref|ZP_02835163.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194448811|ref|YP_002046657.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197247519|ref|YP_002147552.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198243831|ref|YP_002216663.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387404|ref|ZP_03214016.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205353691|ref|YP_002227492.1| methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858002|ref|YP_002244653.1| methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213161475|ref|ZP_03347185.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213646341|ref|ZP_03376394.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289812223|ref|ZP_06542852.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289825485|ref|ZP_06544692.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25325047|pir||AI0830 probable RNA methyltransferase STY2841 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421198|gb|AAL21542.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503807|emb|CAD05832.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29136422|gb|AAO67988.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62128856|gb|AAX66559.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161361996|gb|ABX65764.1| hypothetical protein SPAB_00327 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194407115|gb|ACF67334.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197211222|gb|ACH48619.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197938347|gb|ACH75680.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604502|gb|EDZ03047.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205273472|emb|CAR38449.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205321946|gb|EDZ09785.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327360|gb|EDZ14124.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205336134|gb|EDZ22898.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340551|gb|EDZ27315.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206709805|emb|CAR34157.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247846|emb|CBG25675.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994789|gb|ACY89674.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159199|emb|CBW18714.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913642|dbj|BAJ37616.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085531|emb|CBY95310.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226003|gb|EFX51056.1| hypothetical tRNA/rRNA methyltransferase yfiF [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322715711|gb|EFZ07282.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326624419|gb|EGE30764.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332989577|gb|AEF08560.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 345 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ + ++ L+ V +PHN+G ++RS Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I ++ D L G+ + SSD Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L +K+ L+LG E L +E ++ G +++LNVS A V L Sbjct: 279 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|87310366|ref|ZP_01092496.1| putative rRNA methylase [Blastopirellula marina DSM 3645] gi|87286865|gb|EAQ78769.1| putative rRNA methylase [Blastopirellula marina DSM 3645] Length = 265 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 56/256 (21%), Positives = 94/256 (36%), Gaps = 11/256 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N + + + L V L + ++ LL + L ++ Sbjct: 10 NDPRLSPYRGLANSRAYRA-TGLLIAESRFLVERLLAS-ELEVESLLV--DDLTKVPTLP 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHV 141 P+ +P + ++VG H+G+ L L V LMV V Sbjct: 66 AGREATPIYCLPRDQLQELVGF-NFHRGVMACARRPLLSDLQQVAWPDRERLTLMVAAQV 124 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDAL 199 DP N+G+++R+ AF D I+ R S + ++G IP + SN + Sbjct: 125 VDPENLGSLIRAGSAFGADAILMDDRCGDPYSRRALRVSTGHAFKIPIVETSNLLDQLNV 184 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + + L + ++ ++D+ AL+ G EG GL A + M Sbjct: 185 ARSLGFQLIATVLDESAIPLKKETARHDRTALLFGNEGFGLEADLTAMADRCVTIPMSRG 244 Query: 260 IKALNVSNAAAVALYI 275 +LNVS AA V LY Sbjct: 245 SDSLNVSMAAGVFLYH 260 >gi|153834733|ref|ZP_01987400.1| RNA methyltransferase, TrmH family [Vibrio harveyi HY01] gi|148868872|gb|EDL67936.1| RNA methyltransferase, TrmH family [Vibrio harveyi HY01] Length = 244 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 89/249 (35%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N S + Q+ AT + L + + N Sbjct: 8 KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSSLSVKQIFATADFLEQHSQELN---G 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K + + A + P + + L++ LD V+DP N+G I Sbjct: 63 FECIEASLDELTKASTLVSNNA----AIAVVEIPNVTVPQAKGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II + + + + G+ + + + + Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQVSLVDLPSYLEDANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K + + L++G+E G+R + T + G ++LNV+ A Sbjct: 179 EGESVHK-----TEFSAEGILLMGSESHGVREAASKFVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNMRRQ 242 >gi|134102874|ref|YP_001108535.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea NRRL 2338] gi|133915497|emb|CAM05610.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea NRRL 2338] Length = 234 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 98/233 (42%), Gaps = 8/233 (3%) Query: 58 SAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 AAL++ ++ +++ + A+ +A V+ + + G QG+ Sbjct: 2 LAALSDYDLRVDKVIIAEGLGGAVISEIKEAAADRAVRVQRASAHRVKVLAGNGRHDQGV 61 Query: 115 ALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 + L D + +++LD + P N+G ILR+A A DGI+ R Sbjct: 62 LADVVARKMRPLADALEDPATAPRNVLLLDGLTTPANVGMILRTATAAGIDGIVVPHRGV 121 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 S ++ K+++G H P +R A + + G+ L + +++ + + + Sbjct: 122 ASLDPLVIKASAGVAFHAPVLRAQTAGHAAELLTEAGYPLYALEAGAQESIYEADFGSRA 181 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +LG+E GL Q + M G +++LNV++AAAV + K Sbjct: 182 VFVLGSETAGLSEDVQTRIAQSVAIPMRGGVESLNVASAAAVLCFELLRRTGK 234 >gi|227875291|ref|ZP_03993433.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] gi|269978178|ref|ZP_06185128.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Mobiluncus mulieris 28-1] gi|306818553|ref|ZP_07452276.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35239] gi|307700888|ref|ZP_07637913.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16] gi|227844196|gb|EEJ54363.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] gi|269933687|gb|EEZ90271.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Mobiluncus mulieris 28-1] gi|304648726|gb|EFM46028.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35239] gi|307613883|gb|EFN93127.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16] Length = 269 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 95/257 (36%), Gaps = 12/257 (4%) Query: 26 NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++ KM+ + + + + G + AL + + T+ A Sbjct: 9 DNPSSVKMRRIAGLSRRSARLKSSLIRIEGAQALREALRFAPDSVEDVYLTEAAGVSEPE 68 Query: 84 DANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 +L PV V + + A L ++ ++L Sbjct: 69 LLSLVEAAPVHGHWVSERVARVVAEAAQGWFATASFAVFPPLHEL----RGRVALILPET 124 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 DP N+G +LR A A + ++ + S + +++ G++ H+P R S+L + Sbjct: 125 QDPGNVGTMLRLADACGAGSVFMGEQSADVSSPKVIRASVGSVFHVPTPRFSDLAQLVST 184 Query: 202 MHSWGF----QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 +H + + + + + K+A ++G E GL +E + + M Sbjct: 185 LHESQWLVAGTALDAPLAWGFEVASQFADKKVAWMMGNEAHGLNAAQRELCDVLMAIPMF 244 Query: 258 GIIKALNVSNAAAVALY 274 G ++ NVS AA +AL+ Sbjct: 245 GQAESFNVSQAATLALW 261 >gi|148822089|ref|YP_001286843.1| rRNA methyltransferase [Mycobacterium tuberculosis F11] gi|148720616|gb|ABR05241.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium tuberculosis F11] Length = 288 Score = 97.2 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 99/254 (38%), Gaps = 6/254 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ + + GV V L + + L T LA L D Sbjct: 28 DFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPL-ALFGTDRRLAELKDDLA-G 85 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + +++G LA V ++ + VL+ VND N+G Sbjct: 86 VGAPYYRASADVMARVIGFHLNRGVLAAARRVPEPSVAQVVAGARTVAVLEGVNDHENLG 145 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 +I R+A S D ++ + + + G +PY R ++ L + GF+ Sbjct: 146 SIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFR 205 Query: 209 TIGLSSDSKKPLEQ----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + ++ + +++IAL++GAEG GL + + M +LN Sbjct: 206 LLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALWISDVRVRIPMSRGTDSLN 265 Query: 265 VSNAAAVALYITQN 278 V+ AAA+A Y Sbjct: 266 VATAAALAFYERTR 279 >gi|261252040|ref|ZP_05944614.1| RNA methyltransferase TrmH family [Vibrio orientalis CIP 102891] gi|260938913|gb|EEX94901.1| RNA methyltransferase TrmH family [Vibrio orientalis CIP 102891] Length = 244 Score = 97.2 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 89/249 (35%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N S K+ Q+ AT L + Sbjct: 8 KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSSLKVKQVFATAEFLTEHQGELGHFEC 65 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 +V A A + P+++ + L++ LD V+DP N+G I Sbjct: 66 IEASLDDLTKASTLVSNNA-------AIAVVEIPSIEIPKAQGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + I+ + + + + G+ + ++ + Q + Sbjct: 119 IRVADWYGIKHIVASSDCADPYNPKTISATMGSFGRVTVSQLDLPSYLEQSNLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S + + L++G+E G+R + + T + G ++LNV+ A Sbjct: 179 EGESVHR-----TDFAAEGILLMGSESHGIREQAAKFVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNLRRQ 242 >gi|262172137|ref|ZP_06039815.1| RNA methyltransferase TrmH family [Vibrio mimicus MB-451] gi|261893213|gb|EEY39199.1| RNA methyltransferase TrmH family [Vibrio mimicus MB-451] Length = 244 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 93/249 (37%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L + + K+ + AT L AN+ Sbjct: 8 KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LASSTLKVQNIFATAEF---LAEHANVLAD 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + + K+ + + A + P+++ + L++ LD V+DP N+G I Sbjct: 63 YECTEAALDDLTKVSTLVSNNA----AIAVVEIPSIEVPKAQGLMIGLDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II ++ + + + G+ + ++ + + Sbjct: 119 IRLADWYGIQHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K + L++G+E G+R + + T + G ++LNV+ A Sbjct: 179 EGVSVHK-----TAFKAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNIRRQ 242 >gi|313683424|ref|YP_004061162.1| RNA methyltransferase, trmh family, group 3 [Sulfuricurvum kujiense DSM 16994] gi|313156284|gb|ADR34962.1| RNA methyltransferase, TrmH family, group 3 [Sulfuricurvum kujiense DSM 16994] Length = 225 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 94/229 (41%), Gaps = 5/229 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG V A+ +I L K L + ++ + + F +K +P + +V K Sbjct: 2 IIYGKQPVYYAIERHRERIKVLYLAKE-LDKKEYSSLMKMGFEIKRIPEKAAQSMV-KGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG E + ++ ++ ++VL + D NIG+++RSA A ++ + Sbjct: 60 NHQGFIAEISQVVPYASPFLKKCDFIVVLSSITDMGNIGSLIRSAYALGVQALVISGIKD 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 P+ A++ S+ AL + I + + I + + + K Sbjct: 120 PNLEAMIRTSSGAAL--DLPLVIIHNIHDVLHELKQSGFQIYGAVMDGVDVREASFAAKR 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+LG EG+GL + Q++ + M +LNV A A+ + Sbjct: 178 VLVLGNEGEGLSGRVQKSLDVGISIPMAHDFDSLNVGVAGAILM-ERMR 225 >gi|325674569|ref|ZP_08154256.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707] gi|325554155|gb|EGD23830.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707] Length = 268 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 3/251 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY+ + S +++ + GV V L + LL L L D Sbjct: 17 DYRDLNSSDRRPDLPGGKGLVIAEGVLVVQRMLASRFTP-NSLLGVDRRLTELSADLE-G 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + ++VG LA P D +R+++ + VL+ VND NIG Sbjct: 75 VDVPFYRTTADVMAQVVGFHLNRGVLAAAHRPPALDVEDVLRDARTVAVLEGVNDHENIG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++ R+A D I+ + + + G +P+ +I L + GFQ Sbjct: 135 SMFRNAAGLGVDAILFGAAVADPLYRRAVRVSMGHALRVPFAQIPEWPRGLNILRDRGFQ 194 Query: 209 TIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 I L+ + P + + +++AL+LGAEG GL A + M +LNV+ Sbjct: 195 LISLTPNPSAPTLAEAMTGERVALLLGAEGPGLTEDAMRVTDVRARIPMSAGTDSLNVAT 254 Query: 268 AAAVALYITQN 278 AAA+A Y Sbjct: 255 AAAMAFYERIR 265 >gi|325294465|ref|YP_004280979.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064913|gb|ADY72920.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium thermolithotrophum DSM 11699] Length = 235 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 100/232 (43%), Gaps = 9/232 (3%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGK 107 ++G +T+ A+ + R + ++ + + Q ++++ Sbjct: 3 FIIWGRNTLEEAVKSG-RTLEKVYLQYGHYFEPSFLNWLKEKGIKFQWAKKQQLERLAKT 61 Query: 108 EAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + HQG+ +P+ + + + +VLD V +P N+GAI R+ +F GI Sbjct: 62 KK-HQGIVAILSPIEYISCEKLFKSTIEKESFFVVLDRVTEPQNLGAIARTVESFGGVGI 120 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + ++ S + + K++SGAL H+ R+ +L + +I K + Sbjct: 121 LLPEKNSAPINEIALKASSGALFHLMVSRVPSL-NESLITFKKLGGSIYAVETGGKDIRN 179 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + LILG+EGKG+ + + + + G +LNVS AA +A++ Sbjct: 180 INFQKPLGLILGSEGKGIEKNLLKLSNEIVSIPTVGKTPSLNVSVAAGIAIW 231 >gi|21673707|ref|NP_661772.1| tRNA methyltransferase SpoU [Chlorobium tepidum TLS] gi|21646829|gb|AAM72114.1| tRNA methyltransferase SpoU [Chlorobium tepidum TLS] Length = 229 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 1/161 (0%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L R + L +V+D+VN PHN+ AI+RS A + Y S + Sbjct: 20 FRKIRELLEKRQTDLTLVMDNVNKPHNLAAIIRSCDAVGIHQVHAIS-YRSSIKTKQHTA 78 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 A + ++ S + + S + A+++G E KG Sbjct: 79 AGASRWLKVHLNESFVPVGEKLRQSGMQILVAHYCPEAVNFRSIDYTRPTAIVMGEELKG 138 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + ++ M G++++LNVS AAA+ L+ Q Sbjct: 139 PSQEALGLADNFIYIPMMGMVESLNVSVAAALILFEAQRQR 179 >gi|313204707|ref|YP_004043364.1| tRNA/rRNA methyltransferase (spou) [Paludibacter propionicigenes WB4] gi|312444023|gb|ADQ80379.1| tRNA/rRNA methyltransferase (SpoU) [Paludibacter propionicigenes WB4] Length = 250 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 90/255 (35%), Gaps = 15/255 (5%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S +QK + + G V I A A + + Sbjct: 6 KIKLINSLSQK-KFRDETGLFVAEGTKLVLDLAQAFQCSILA------ATAAWLEEYSRL 58 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + + + KI +++ LA+ P S D+++ L + LD V DP N+G Sbjct: 59 EADEIIEIDENELSKISNQKSPQGVLAVFAKPNHSWDKDSLKEK-LSLALDDVQDPGNLG 117 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F I + + + + ++ GAL + +S + L H Sbjct: 118 TIIRIADWFGITDIFCSTHSADAYNTKTVQATMGALARVKVHTVSLVDFLLSVAHEIP-- 175 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264 + + + + + +++G EG G+ + ++ T L ++LN Sbjct: 176 -VYGTFMDGENIYDKTLTKHGIIVMGNEGNGISDEIEKLVTERLLLPNFPLGQATSESLN 234 Query: 265 VSNAAAVALYITQNH 279 V A A+ + Sbjct: 235 VGVATALVCAEFRRR 249 >gi|294661208|ref|YP_003573084.1| hypothetical protein Aasi_1647 [Candidatus Amoebophilus asiaticus 5a2] gi|227336359|gb|ACP20956.1| hypothetical protein Aasi_1647 [Candidatus Amoebophilus asiaticus 5a2] Length = 258 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 87/245 (35%), Gaps = 8/245 (3%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K ++ Q L G V L + I L+AT N L + L Sbjct: 11 KIKFIKSLCLK-KYRLQENKFILEGAKNVKLLLESDYE-INILVATSNFLHEYT-NLLLN 67 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + V + + + + + AL A + T A+ Q +VLD+++DP N+G Sbjct: 68 RNIEIFQVNEKELSALGTFQENN--AALAVATIPDNTPFAIGEHQYGLVLDNISDPGNLG 125 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A + GII + + + ++ ++ + Sbjct: 126 TIIRVADWYGIAGIICSTNTVELYNPKV---LHASMGSFVNTKVYYTDLPTYLAQTNLPI 182 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + Q + + +I+G E KG+ + G ++LN + A Sbjct: 183 IGTFTKGKNLHDPQTVWPSEGLIIIGNEAKGISETLLPYIHQKISIPKYGHAESLNAALA 242 Query: 269 AAVAL 273 A+ Sbjct: 243 TAIVC 247 >gi|323699577|ref|ZP_08111489.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp. ND132] gi|323459509|gb|EGB15374.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio desulfuricans ND132] Length = 253 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 12/247 (4%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQT 100 + +++ G V L + +K+ + K D P K+V + Sbjct: 8 KKDSKIYVVGNKPVKELLLDSPQKVDFVAFRKGRRDQAMEEILDLCRTAQVPYKSVSAKE 67 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSA 154 +D + HQG+A A L L+ L++ LD V D N+G + R+ Sbjct: 68 LDYM--FRGNHQGVAARCAALDYTPLEQLLEEALQAPLPLIVALDQVQDTGNVGVLARTV 125 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS- 213 A G+I + + A +S++GAL +P ++ NL +A++ ++ + Sbjct: 126 YALGGAGLIVCQHHGAYIGAGAVRSSAGALNKLPVAKVGNLANAMKDCVNYDYTLYCARL 185 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + LILG E KG+RP + A H+ +LNV+ A A+ + Sbjct: 186 APDSDNVYTADLQTPAVLILGNEEKGIRPGVAKFAQHSLHIPFLREFDSLNVAQAGAIIV 245 Query: 274 YITQNHF 280 Sbjct: 246 SEFARRL 252 >gi|320449724|ref|YP_004201820.1| tRNA guanosine-2'-O-methyltransferase [Thermus scotoductus SA-01] gi|320149893|gb|ADW21271.1| tRNA guanosine-2'-O-methyltransferase [Thermus scotoductus SA-01] Length = 191 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 1/153 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L ++L++V+ PHN+ AILR+ A + S ++ Sbjct: 16 RQPDLTVLLENVHKPHNLSAILRTCDAVGILEAHAVNPTGGVPTFNETSGGSHKWVYLRV 75 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + K + L D + + A++LGAE G+ +T + Sbjct: 76 HPSIQEAISFLKEKGFRVYATALRED-ARDFREVDYTQPTAILLGAEKWGVSEETLALSH 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G++++LNVS AAAV L+ Q K Sbjct: 135 GAIKIPMLGMVQSLNVSVAAAVILFEAQRQRLK 167 >gi|312138435|ref|YP_004005771.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S] gi|311887774|emb|CBH47086.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S] Length = 268 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 3/251 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY+ + S +++ + GV V L + LL L L D Sbjct: 17 DYRDLNSSDRRPDLPGGKGLVIAEGVLVVQRMLASRFTP-NSLLGVDRRLTELSADLE-G 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + ++VG LA P D +R+++ + VL+ VND NIG Sbjct: 75 VDVPFYRTTADVMAQVVGFHLNRGVLAAAHRPPALDVEDVLRDARTVAVLEGVNDHENIG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++ R+A D I+ + + + G +P+ +I L + GFQ Sbjct: 135 SMFRNAAGLGVDAILFGAAVADPLYRRAVRVSMGHALRVPFAQIPEWPRGLNILRDRGFQ 194 Query: 209 TIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 I L+ + P + + +++AL+LGAEG GL A + M +LNV+ Sbjct: 195 LISLTPNPAAPTLAEAMTGERVALLLGAEGPGLTEDAMRVTDVRARIPMSAGTDSLNVAT 254 Query: 268 AAAVALYITQN 278 AAA+A Y Sbjct: 255 AAAMAFYERIR 265 >gi|307132323|ref|YP_003884339.1| putative methyltransferase [Dickeya dadantii 3937] gi|306529852|gb|ADM99782.1| predicted methyltransferase [Dickeya dadantii 3937] Length = 362 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + + R + V Sbjct: 118 RRQRSEETRVYGENACQALFLSRPEAIVRGWFLQEVTPRFREALRWMAANRKAYHVVEDD 177 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + + G E H G+ L ++ ++ L+ V +PHN+G I+RS Sbjct: 178 ELVRASGTE-HHGGVCFLIKKRHGLDVAAYLSEAGDTDCVLALEDVGNPHNLGGIMRSCA 236 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + ES ++A G EH+ I L DAL + + G+ + SS Sbjct: 237 HFGVKGLLV-NDAAQLESGAAVRTAEGGAEHVKAISADGLVDALAQFRAAGYTIVTTSSH 295 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L + K ++LG EG GL + + G +++LN+S A + L Sbjct: 296 KGTTLSKVSLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIDGTGNVESLNISVATGILLAE 355 Query: 276 TQNH 279 Sbjct: 356 WWRQ 359 >gi|14970548|emb|CAC44352.1| YfiF protein [Erwinia chrysanthemi] Length = 366 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + + R + V Sbjct: 122 RRQRSEETRVYGENACQALFLSRPEAIVRGWFLQEVTPRFREALRWMAANRKAYHVVEDD 181 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + + G E H G+ L ++ ++ L+ V +PHN+G I+RS Sbjct: 182 ELVRASGTE-HHGGVCFLIKKRHGLDVAAYLSEAGDTDCVLALEDVGNPHNLGGIMRSCA 240 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + ES ++A G EH+ I L DAL + + G+ + SS Sbjct: 241 HFGVKGLLV-NDAAQLESGAAVRTAEGGAEHVKAISADGLVDALAQFRAAGYTIVTTSSH 299 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L + K ++LG EG GL + + G +++LN+S A + L Sbjct: 300 KGTTLSKVSLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIDGTGNVESLNISVATGILLAE 359 Query: 276 TQNH 279 Sbjct: 360 WWRQ 363 >gi|46580760|ref|YP_011568.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio vulgaris str. Hildenborough] gi|46450180|gb|AAS96828.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio vulgaris str. Hildenborough] gi|311234472|gb|ADP87326.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris RCH1] Length = 196 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 57/152 (37%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L +VL +++DPHN+ AI RS AF + + S SAS Sbjct: 19 WRQKDLTLVLANIHDPHNVSAIYRSCDAFGVAQVHLYYTDTAFPSLSGKTSASARKWVDT 78 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + S S KP+ A+I+G E G+ + + Sbjct: 79 VRHQDRDSLMSTLRASGHQVLATSCSPVAKPVADYDLTRPTAIIMGNEHSGVSQELVDVV 138 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ M G+I++ NVS AAA+ L Sbjct: 139 DGEVYIPMYGMIQSFNVSVAAAILLSEASRQR 170 >gi|21957656|gb|AAM84502.1|AE013695_4 hypothetical protein y0920 [Yersinia pestis KIM 10] gi|45435370|gb|AAS60929.1| putative tRNA/rRNA methyltransferase [Yersinia pestis biovar Microtus str. 91001] Length = 393 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 146 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 205 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154 + K G E H G+ + Q ++ L+ V +PHN+G I+R+ Sbjct: 206 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEEVGNPHNLGGIMRTC 264 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F +G++ + + ES ++A G EHI I + L G+ + SS Sbjct: 265 AHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 323 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + K+ L+LG E GL + + G +++LNVS A + L Sbjct: 324 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLA 383 Query: 275 ITQNH 279 Sbjct: 384 EWWRQ 388 >gi|51595204|ref|YP_069395.1| methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|51588486|emb|CAH20094.1| putative tRNA/rRNA methyltransferase [Yersinia pseudotuberculosis IP 32953] Length = 390 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 143 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 202 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154 + K G E H G+ + Q ++ L+ V +PHN+G I+R+ Sbjct: 203 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEEVGNPHNLGGIMRTC 261 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F +G++ + + ES ++A G EHI I + L G+ + SS Sbjct: 262 AHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 320 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + K+ L+LG E GL + + G +++LNVS A + L Sbjct: 321 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLA 380 Query: 275 ITQNH 279 Sbjct: 381 EWWRQ 385 >gi|162418675|ref|YP_001607797.1| putative methyltransferase [Yersinia pestis Angola] gi|162351490|gb|ABX85438.1| RNA methyltransferase, TrmH family [Yersinia pestis Angola] Length = 388 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 141 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 200 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154 + K G E H G+ + Q ++ L+ V +PHN+G I+R+ Sbjct: 201 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEEVGNPHNLGGIMRTC 259 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F +G++ + + ES ++A G EHI I + L G+ + SS Sbjct: 260 AHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 318 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + K+ L+LG E GL + + G +++LNVS A + L Sbjct: 319 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLA 378 Query: 275 ITQNH 279 Sbjct: 379 EWWRQ 383 >gi|108808751|ref|YP_652667.1| putative methyltransferase [Yersinia pestis Antiqua] gi|108810992|ref|YP_646759.1| putative methyltransferase [Yersinia pestis Nepal516] gi|145600164|ref|YP_001164240.1| putative methyltransferase [Yersinia pestis Pestoides F] gi|149364890|ref|ZP_01886925.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CA88-4125] gi|165926567|ref|ZP_02222399.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Orientalis str. F1991016] gi|165936079|ref|ZP_02224649.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Orientalis str. IP275] gi|166010984|ref|ZP_02231882.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua str. E1979001] gi|166213137|ref|ZP_02239172.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua str. B42003004] gi|167399004|ref|ZP_02304528.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421660|ref|ZP_02313413.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423225|ref|ZP_02314978.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469723|ref|ZP_02334427.1| predicted methyltransferase [Yersinia pestis FV-1] gi|170025557|ref|YP_001722062.1| putative methyltransferase [Yersinia pseudotuberculosis YPIII] gi|186894222|ref|YP_001871334.1| putative methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|218930294|ref|YP_002348169.1| putative methyltransferase [Yersinia pestis CO92] gi|229013132|ref|NP_668251.2| putative methyltransferase [Yersinia pestis KIM 10] gi|229220784|ref|NP_992052.2| putative methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|229838881|ref|ZP_04459040.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896374|ref|ZP_04511543.1| predicted methyltransferase [Yersinia pestis Pestoides A] gi|229899450|ref|ZP_04514593.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229901210|ref|ZP_04516332.1| predicted methyltransferase [Yersinia pestis Nepal516] gi|270489397|ref|ZP_06206471.1| RNA 2'-O ribose methyltransferase substrate binding protein [Yersinia pestis KIM D27] gi|294504983|ref|YP_003569045.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Z176003] gi|108774640|gb|ABG17159.1| tRNA/rRNA methyltransferase [Yersinia pestis Nepal516] gi|108780664|gb|ABG14722.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Antiqua] gi|115348905|emb|CAL21862.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CO92] gi|145211860|gb|ABP41267.1| tRNA/rRNA methyltransferase [Yersinia pestis Pestoides F] gi|149291303|gb|EDM41377.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CA88-4125] gi|165916224|gb|EDR34831.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Orientalis str. IP275] gi|165921495|gb|EDR38692.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Orientalis str. F1991016] gi|165989984|gb|EDR42285.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua str. E1979001] gi|166205924|gb|EDR50404.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua str. B42003004] gi|166960579|gb|EDR56600.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051508|gb|EDR62916.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057395|gb|EDR67141.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752091|gb|ACA69609.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis YPIII] gi|186697248|gb|ACC87877.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis PB1/+] gi|229681139|gb|EEO77233.1| predicted methyltransferase [Yersinia pestis Nepal516] gi|229687852|gb|EEO79925.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229695247|gb|EEO85294.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700650|gb|EEO88680.1| predicted methyltransferase [Yersinia pestis Pestoides A] gi|262363048|gb|ACY59769.1| putative tRNA/rRNA methyltransferase [Yersinia pestis D106004] gi|270337901|gb|EFA48678.1| RNA 2'-O ribose methyltransferase substrate binding protein [Yersinia pestis KIM D27] gi|294355442|gb|ADE65783.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Z176003] gi|320016459|gb|ADW00031.1| putative methyltransferase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 388 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 141 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 200 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154 + K G E H G+ + Q ++ L+ V +PHN+G I+R+ Sbjct: 201 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEEVGNPHNLGGIMRTC 259 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F +G++ + + ES ++A G EHI I + L G+ + SS Sbjct: 260 AHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 318 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + K+ L+LG E GL + + G +++LNVS A + L Sbjct: 319 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLA 378 Query: 275 ITQNH 279 Sbjct: 379 EWWRQ 383 >gi|327540299|gb|EGF26885.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopirellula baltica WH47] Length = 275 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 100/269 (37%), Gaps = 16/269 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP----------SRKIFQLLATK 75 + +++ S ++SR + + G A+ + + Sbjct: 8 QNAAVRRIVSL-RRSRKRRAAGVVLVDGPRESLRAIEAGLKLTAFYEIEPKPSESVGPPD 66 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL--SPTLDAVRNSQ 133 + + + V + KI + + +A AP LD + Sbjct: 67 MPEQAVARQHAIDSGVH-RWVTSEVFRKIAYTASTDRCVAEFVAPDDSLEQLLDRSSWND 125 Query: 134 -LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L++VLD V P N+GA+ RSA A ++ + S + + + GA+ +P Sbjct: 126 GLILVLDRVEKPGNLGAVFRSADAAGVSAVLLSDCPSDRFNPNAIRGSLGAVFTVPSASG 185 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 S + + G++ + + +PL K+A++LG+E GL + + Sbjct: 186 SES-QMEAFLKTHGYRVAAMRVEGSRPLFDSDLRGKVAVVLGSEADGLADRWAGDSIDPV 244 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281 L M G + +LNVS +AA+ + + Sbjct: 245 ALPMAGHVDSLNVSVSAAIVAFEAVRQRS 273 >gi|291533010|emb|CBL06123.1| rRNA methylases [Megamonas hypermegale ART12/1] Length = 70 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L++G+EG+G+ T+ + + M G + +LN SNAAA+ Y Sbjct: 6 NYYDANMTGPLVLVIGSEGRGVSRLTKNACDFIVKIPMRGKVNSLNASNAAAILAYEVLK 65 Query: 279 HFA 281 Sbjct: 66 QRT 68 >gi|77361707|ref|YP_341282.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas haloplanktis TAC125] gi|76876618|emb|CAI87840.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase) [Pseudoalteromonas haloplanktis TAC125] Length = 228 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 1/167 (0%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSES 173 +T + + R + L + L+ V+ HN+ AI+RSA A C + + Sbjct: 1 MQQTRYQRIADVLSRRQTDLTVCLEDVHKHHNLSAIVRSADAVGCHHVHAVWPENQKWLT 60 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + + LE + I + A++ + S + A+I+ Sbjct: 61 NNTSGGSKNWLETHLHKNIDDAATAMRARNPDIQILATHLSTDAVDFREIDYTKPTAIIV 120 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G E G+ + + A + M G++++LNVS AAA+ L+ Q Sbjct: 121 GQEKTGISEQALKHADQNIIIPMQGMVQSLNVSVAAALILFEAQRQR 167 >gi|269961010|ref|ZP_06175379.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834229|gb|EEZ88319.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 285 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 89/249 (35%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N S + Q+ AT L + + + N Sbjct: 49 KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSSLTVKQIFATAEFLEQHNQELN---G 103 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K + + A + P + + L++ LD V+DP N+G I Sbjct: 104 FECIEASLDDLTKASTLVSNNA----AIAVVEIPNVTVPQAKGLMIALDGVSDPGNLGTI 159 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II + + + + G+ + + + + Sbjct: 160 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQVSLVDLPSYLEDANLPVYGAFL 219 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K + + L++G+E G+R + T + G ++LNV+ A Sbjct: 220 EGESVHK-----TEFSAEGILLMGSESHGVREAASKFVTDKITIPAFGGAESLNVAMATG 274 Query: 271 VALYITQNH 279 + L + Sbjct: 275 IILDNMRRQ 283 >gi|218131049|ref|ZP_03459853.1| hypothetical protein BACEGG_02652 [Bacteroides eggerthii DSM 20697] gi|217986753|gb|EEC53086.1| hypothetical protein BACEGG_02652 [Bacteroides eggerthii DSM 20697] Length = 253 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 86/255 (33%), Gaps = 16/255 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K ++ + G V L + L+AT L+ Sbjct: 7 RIKYIRSLELK-KNRKADKVFLAEGPKLVGDLL--GHFRCRFLIATAEWLSAHRQLPVE- 62 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + V + + + Q LA+ P V L + LD V DP N+G Sbjct: 63 ---DITEVSEKELSCASLLKTPQQVLAVFEQPDEVMDASVVA-HSLCLALDDVQDPGNLG 118 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I + + + ++ G + + S + S Sbjct: 119 TIIRLADWFGIEHIFCSPNTVDAYNPKTIQATMGGIARVKLHYTSLP----GLIGSLKDI 174 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII----KALN 264 + + + + + + +++G EG G+ + ++ ++ ++LN Sbjct: 175 PVYGTFLDGENMYTQPLSAHGLIVMGNEGNGIGNEVKQLINRKLYIPNYPSTRETSESLN 234 Query: 265 VSNAAAVALYITQNH 279 V+ A AV + Sbjct: 235 VAIATAVVCAEFRRQ 249 >gi|120601954|ref|YP_966354.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris DP4] gi|120562183|gb|ABM27927.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris DP4] Length = 196 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 57/152 (37%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L +VL +++DPHN+ AI RS AF + + + SAS Sbjct: 19 WRQKDLTLVLANIHDPHNVSAIYRSCDAFGVAQVHLYYTDTAFPALSGKTSASARKWVDT 78 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + S S KP+ A+I+G E G+ + + Sbjct: 79 VRHQDRDSLMSTLRASGHQVLATSCSPVAKPVADYDLTRPTAIIMGNEHSGVSQELVDVV 138 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ M G+I++ NVS AAA+ L Sbjct: 139 DGEVYIPMYGMIQSFNVSVAAAILLSEASRQR 170 >gi|158291898|ref|XP_313427.4| AGAP003655-PA [Anopheles gambiae str. PEST] gi|157017508|gb|EAA08963.4| AGAP003655-PA [Anopheles gambiae str. PEST] Length = 378 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 48/289 (16%), Positives = 96/289 (33%), Gaps = 28/289 (9%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 Y L+ N Y+ + ++ + L L G + R + + Sbjct: 82 KLRYTILQSNDARYRDLMMLIGSRKNRERERMLVLEGRRLIMDGYQAGLRLEAIVTSDVK 141 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH-----QGLALETAPLLSPTLDAVRN 131 LA L + A L P+ V QT+ + G + L++ + Sbjct: 142 LLAELTFRAKL-KACPIFLVKRQTMMEWSSLTTSPGLIGIFGEPSNMSELVTRNATGSKR 200 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +V D++ +P+N+G+I+RS A S +I K + + +GA +P Sbjct: 201 LPVTVVCDNIREPNNLGSIVRSCAAVSVREVILLKGCAHPWDLKCLRGGAGAHFRVPIYG 260 Query: 192 ISNLTDALQK----------MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 + + D + L++G E G+ Sbjct: 261 PIEAYQLPEHVRAGSIFVVADNKKPTDERNGFRWKHYDRIDYGSADHVVLVIGGETYGVS 320 Query: 242 PKTQETATS------------MAHLHMPGIIKALNVSNAAAVALYITQN 278 + T +AH+ + +++LN ++A +V LY + Sbjct: 321 DDIRRCLTQNDGEQAPQDRKFVAHIPLANGVESLNTASALSVILYEMRR 369 >gi|156973799|ref|YP_001444706.1| hypothetical protein VIBHAR_01509 [Vibrio harveyi ATCC BAA-1116] gi|156525393|gb|ABU70479.1| hypothetical protein VIBHAR_01509 [Vibrio harveyi ATCC BAA-1116] Length = 244 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 87/249 (34%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N S + Q+ AT L + + N Sbjct: 8 KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSSLSVKQIFATAEFLEQHSHELN---G 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K + + A + P + + L++ LD V+DP N+G I Sbjct: 63 FECIEASLDELTKASTLVSNNA----AIAVVEIPNVTVPQAKGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II + + + + G+ + + + + Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQVSLVDLPSYLEDANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K + L++G+E G+R + T + G ++LNV+ A Sbjct: 179 EGESVHK-----TEFSADGILLMGSESHGVREAASKFVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNMRRQ 242 >gi|31544882|ref|NP_853460.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. R(low)] gi|31541729|gb|AAP57028.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. R(low)] gi|284930958|gb|ADC30897.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. R(high)] Length = 260 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 99/256 (38%), Gaps = 12/256 (4%) Query: 35 SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94 FN K ++ + E L L+G + V L N KI ++ K + Sbjct: 8 QFNNKHQNKHKKERLCLFGYNGVYEGLINN-LKIKKVYLHKE--DHPLLKLIKQKGIEYE 64 Query: 95 TVPPQTIDKIVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + D HQG E +++VLD ++DP N Sbjct: 65 LHTIKWFDNQYRDLPNHQGFVAEIDGSSLTISFNQFCEKIKNEQQGIVVVLDQIHDPGNF 124 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ILRS +A + G+I K S + + K++ GA ++ I ++NL+ A++ + Sbjct: 125 GGILRSCLAANVLGVIFKKDNQVSINNTVIKTSLGACFYLNLIEVANLSYAIKDLQEKYG 184 Query: 208 QTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNV 265 + + +K LI+G E KG+ + + A + M I++LNV Sbjct: 185 FWSYVSNLSDQAQDYNVDYANKSILIVGNEQKGVSSQLIKNADYQIKIPMYTDKIQSLNV 244 Query: 266 SNAAAVALYITQNHFA 281 S A + L+ + Sbjct: 245 SVATGIMLFNMKQKIK 260 >gi|311894893|dbj|BAJ27301.1| putative RNA methyltransferase [Kitasatospora setae KM-6054] Length = 267 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 94/239 (39%), Gaps = 4/239 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + R G + AL R LL K + D Sbjct: 17 DYTDLTDVELRRRREPAEGLFIAEGEKVIRRALAAGFRMRSMLLTAK--WLGVMADVIEG 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV V P +++ G LA L + + ++ + VL+ + D N+G Sbjct: 75 TDAPVHLVDPVLAERVTGYHVHRGALASMERKPLPGAPEVLAGARRVAVLEGLVDHTNLG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI RSA A D ++ + + K++ GA+ +PY R+ DAL + GF+ Sbjct: 135 AIFRSAAALGMDAVLLSPDCADPLYRRAVKTSMGAVFSVPYARLDPWPDALGAVRDAGFE 194 Query: 209 TIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + L+ + + K AL+LGAEG GL PK A + M I +LNV Sbjct: 195 LLALTPSGAEDFTAARPHLLPKAALMLGAEGDGLTPKALAAADQRVRIPMAHGIDSLNV 253 >gi|34540534|ref|NP_905013.1| RNA methyltransferase [Porphyromonas gingivalis W83] gi|34396847|gb|AAQ65912.1| RNA methyltransferase, TrmH family [Porphyromonas gingivalis W83] Length = 254 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 90/258 (34%), Gaps = 17/258 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S ++ ++ + + + G V L P + L+ T L + P Sbjct: 6 QIKFLRSLRER-KYRLREQAFAVEGPKLVGEML--PFYRCRMLVGTAAMLR----AVSTP 58 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 H V +P + + A P L ++LD V DP N+G Sbjct: 59 HDAEVVELPES---FDFKRISTQTTPQPLMAVFDLPAEPEPVVEGLTLLLDGVQDPGNVG 115 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWG 206 ILR+A F + + S + +++ GAL + + N D + Sbjct: 116 TILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYFRRQGIP 175 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-----GIIK 261 L S + L+LG+EG+G+ P+ T + G + Sbjct: 176 VYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTE 235 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV+ A A+ + Sbjct: 236 SLNVAIATAILCSEWRRR 253 >gi|258406290|ref|YP_003199032.1| tRNA guanosine-2'-O-methyltransferase [Desulfohalobium retbaense DSM 5692] gi|257798517|gb|ACV69454.1| tRNA guanosine-2'-O-methyltransferase [Desulfohalobium retbaense DSM 5692] Length = 202 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 68/175 (38%) Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 H E + A R L +V+++++DPHN+ AI+RS AF + Sbjct: 4 PKSHPRPRTEAREKRIREVLARRQKDLTLVMNNIHDPHNVAAIMRSCDAFGVPDVHLLYT 63 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + SAS + S+ A S S +PL + Sbjct: 64 SEAFPALGRRASASARKWVGRHHHTSSEALAGHLRDHGMRILSTSCSPSARPLPEWEFTS 123 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A++LG E +G+ P + + M G++++ NVS AAA+ LY + Sbjct: 124 PTAIVLGNEHRGVDPALRSHIDGELFIPMQGMVQSFNVSVAAAIILYEAWRQRNR 178 >gi|162448040|ref|YP_001621172.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A] gi|161986147|gb|ABX81796.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A] Length = 233 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 93/256 (36%), Gaps = 26/256 (10%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++++ +K K ++ Q + +YG V AL + +++ T + Sbjct: 4 SKDNKKFKSWMKLKTK-KYRDQMDQYIVYGQTFVDLALKKG--VVEEIVTTNPNIEGTLI 60 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 L V ++VLD V + Sbjct: 61 SEVLMKELKVTETSYDVFAVCKKVSTPIVSNQ-------------------ILVLDDVQN 101 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GAILRSA+AF+ ++ + + + +++ GA + + I L Sbjct: 102 PDNVGAILRSALAFNFMHVVFSNHTADLYNDKTIRASGGA---LFDLYIERLDIHEFITL 158 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 +D+ K + K L+LG EG+GLR KT E ++ +++L Sbjct: 159 KKQNGYQVFGADAHKSELEPDKTKPFILVLGNEGQGLRSKTIELLDGRLNIETH-HVESL 217 Query: 264 NVSNAAAVALYITQNH 279 NV+ A ++ +Y Sbjct: 218 NVTVAGSILMYEWSKQ 233 >gi|268316035|ref|YP_003289754.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252] gi|262333569|gb|ACY47366.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252] Length = 257 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 53/252 (21%), Positives = 99/252 (39%), Gaps = 7/252 (2%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 R K++ +++ + + GV ++AAL + + L+ Sbjct: 4 RRRLKELARLHRR-KDREALGQYLVEGVRLLAAALEAQAPLVEVLVTATARRRPEVQALL 62 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 PV V Q + ++ E LA A + + + ++ LD + DP N Sbjct: 63 ARVAVPVAEVSEQEMARLSEVETSQGVLA--VARMQWQPEAHLLRCRRILALDGLQDPGN 120 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 G ILR+A F + ++ + + ++A G+ + +R L D L ++ + G Sbjct: 121 AGTILRAAAWFGIEAVVAGAGTVDLYNPKVVRAAMGSHWDLALVRTGALPDLLAQLQANG 180 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKAL 263 F G + + L+LG+E GL+P +E T+ + ++L Sbjct: 181 FTCYGADLEGTPASRW-QPREPAVLVLGSEAHGLQPAVRERLTARVTVPGSPRRQATESL 239 Query: 264 NVSNAAAVALYI 275 NV+ AA V LY Sbjct: 240 NVAMAATVLLYE 251 >gi|109947425|ref|YP_664653.1| putative rRNA methylase [Helicobacter acinonychis str. Sheeba] gi|109714646|emb|CAJ99654.1| putative rRNA methylase [Helicobacter acinonychis str. Sheeba] Length = 227 Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG V LN+ K+ ++ +K +L + L P + + K Sbjct: 4 VIYGKQVVMHILNSHQEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ ++ +L ++ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGILARVELPIAISLKEIKKAQKLLVLCSITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + + T L ++ ++ + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVVPNTLDLINELKTSGFLCLGANMQGSSPKEYLALKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSIKMRRDFDSLNVSVAAGILM 223 >gi|85059886|ref|YP_455588.1| putative methyltransferase [Sodalis glossinidius str. 'morsitans'] gi|84780406|dbj|BAE75183.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 367 Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 91/246 (36%), Gaps = 10/246 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A N I + ++ R + V Sbjct: 121 RRQRAEETRVYGENACQALFRNRPDAIVRAWFEQSVTPRFRDALRWMAANRKAYHVVEYD 180 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153 + K G E H G+ D + ++ L+ V++PHN+GA+LRS Sbjct: 181 ELAKASGTE-HHGGVCFLIKKRAGLDADGYLASAAAQQQDCVLALEQVSNPHNLGAMLRS 239 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 F + + + +S ++A G EH+ I+ ++ LQ+ G+ + L+ Sbjct: 240 CAHFGVNSV-MVSDSALLDSGAAVRTAEGGAEHVKAIKCDDVLQDLQRFQRAGYTVVTLA 298 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +S L + L+LG EG L A ++ G + +LNVS +A + L Sbjct: 299 GNSGTSLSTVKMPARTVLVLGEEGSALSEAVLSQADIAVTINGSGRVPSLNVSVSAGILL 358 Query: 274 YITQNH 279 Sbjct: 359 AEWWRQ 364 >gi|296201933|ref|XP_002748208.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Callithrix jacchus] Length = 350 Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 63/263 (23%), Positives = 103/263 (39%), Gaps = 28/263 (10%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-----ARLDWDANLPHPFPVKTVPPQT 100 L+G+ AL R + +LL PV Q Sbjct: 47 SRQELLFGLSPCLLALRAARRYVARLLLQAGKAGLQGERAEVLRLAEARDIPVLRPRRQK 106 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRS 153 +D + + VHQG+ +E +PL QL +VLD + DP N GA+LR Sbjct: 107 LDAMCRYQ-VHQGVCMEVSPLRPLPWIEAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRC 165 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A D IIT+++ S + V++K+++GA+E + +LT LQ G+ G Sbjct: 166 AHFLGVDKIITSRKNSCPLTPVVSKASAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225 Query: 214 SDSKKPLEQ-----------EIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPG 258 + Q + + L+LG EG GL + Q + + + +P Sbjct: 226 GCPGPKVPQSSKIPITSSLEFLWDQPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPP 285 Query: 259 IIKALNVSNAAAVALYITQNHFA 281 ++LNVS A + L+ + Sbjct: 286 GFESLNVSVVAGILLHSICSQRK 308 >gi|194336785|ref|YP_002018579.1| tRNA guanosine-2'-O-methyltransferase [Pelodictyon phaeoclathratiforme BU-1] gi|194309262|gb|ACF43962.1| tRNA guanosine-2'-O-methyltransferase [Pelodictyon phaeoclathratiforme BU-1] Length = 212 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 56/154 (36%), Gaps = 1/154 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L +++D+VN HN+ AI+RS D I + A + + + Sbjct: 4 HRQPDLTVIMDNVNKAHNLSAIIRSCDGVGIDEIHAVSYRKSIYAKQNAAAGASKWLTLT 63 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + AL++GAE G+ + + A Sbjct: 64 LHPDIASAYRKVSACGMQILVATGKEG-SRDFRAIDYTVPTALVMGAEWDGISEEAIKGA 122 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G++++LNVS A AV L+ Q A+ Sbjct: 123 DHAITVPMFGMVESLNVSVATAVILFEAQRQRAE 156 >gi|317477065|ref|ZP_07936307.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA] gi|316906858|gb|EFV28570.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA] Length = 253 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 86/255 (33%), Gaps = 16/255 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K ++ + G V L + L+AT L+ Sbjct: 7 RIKYIRSLELK-KNRKADKVFLAEGPKLVGDLL--GHFRCRFLIATVEWLSAHRQLPVE- 62 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + V + + + Q LA+ P V L + LD V DP N+G Sbjct: 63 ---DITEVSEKELSCASLLKTPQQVLAVFEQPDEVMDASVVA-HSLCLALDDVQDPGNLG 118 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I + + + ++ G + + S + S Sbjct: 119 TIIRLADWFGIEHIFCSPNTVDAYNPKTIQATMGGIARVKLHYTSLP----GLIGSLKDI 174 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII----KALN 264 + + + + + + +++G EG G+ + ++ ++ ++LN Sbjct: 175 PVYGTFLDGENMYTQPLSAHGLIVMGNEGNGIGNEVKQLINRKLYIPNYPSTRETSESLN 234 Query: 265 VSNAAAVALYITQNH 279 V+ A AV + Sbjct: 235 VAIATAVVCAEFRRQ 249 >gi|145219814|ref|YP_001130523.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris vibrioformis DSM 265] gi|145205978|gb|ABP37021.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeovibrioides DSM 265] Length = 232 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 1/152 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +V+D+VN PHN+ AI+RS A + S +A + Sbjct: 17 RQPDLTVVMDNVNKPHNLSAIIRSCDAVGIHDLYAVS-SKKSIHTTQNAAAGAGRWTNLH 75 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +R T + +++ + A++LGAE +G+ + + A Sbjct: 76 LRKDIGTLCRKLGMEGMQVLAATNTEESRDFRTIDFTLPTAIVLGAEWEGVSAEAIQAAD 135 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G++++LNVS AAA+ L+ + + Sbjct: 136 MAITIPMYGMVESLNVSVAAALILFEAERQRS 167 >gi|227494667|ref|ZP_03924983.1| RNA methyltransferase [Actinomyces coleocanis DSM 15436] gi|226831849|gb|EEH64232.1| RNA methyltransferase [Actinomyces coleocanis DSM 15436] Length = 282 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 80/241 (33%), Gaps = 13/241 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVG 106 + + G V AL + + + ++ A R V V + Sbjct: 41 VLVEGPQAVREALRFCGKDLLDVYISEEAWERYPELVQEAKAATRWVHQVTNEV----SK 96 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 + + ++VL DP N G ++R A A D + Sbjct: 97 AISTDSQGITAVVKDFRTDGLPKVDWDFIVVLAQTQDPGNAGTMIRIADAAGADAVFICS 156 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-------SDSKKP 219 S + +S++G++ H+P I L + L+ + G Q +G D+ Sbjct: 157 GSVDVTSPKVVRSSAGSVFHLPSIVNVGLPEVLEWARARGMQLLGADGNGSVDLFDAADC 216 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + A I G E G + + G ++LNVS AAAV L+ + Sbjct: 217 MVDVDLAEPTAWIFGNEAHGFAQFDTSEIEHFVSIPLGGHAESLNVSAAAAVCLFASAKA 276 Query: 280 F 280 Sbjct: 277 R 277 >gi|268590433|ref|ZP_06124654.1| putative tRNA/rRNA methyltransferase [Providencia rettgeri DSM 1131] gi|291314348|gb|EFE54801.1| putative tRNA/rRNA methyltransferase [Providencia rettgeri DSM 1131] Length = 364 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 82/255 (32%), Gaps = 9/255 (3%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LP 88 K Q + + +YG + A N I + ++ R Sbjct: 109 KSQIDPEQLRKQRQEETR--IYGENACQAMFKNRPDAIVRAWFLQSVTPRFRDALKWMAA 166 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDP 144 + V + + K G E H G+ + L + ++ L+ V +P Sbjct: 167 NRKAYHVVDDEELSKASGTE-HHGGVCFIIKKRGGMSADAYLQQAAGNDCVLALEDVGNP 225 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+G I+RS F G+I A + + GA + + Sbjct: 226 HNLGGIMRSCAHFGIKGVILQDAGMLESGAAIRTAEGGAEHIKAIDADGLTDTLDKFRKA 285 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 S + L + K+ L+LG E GL T + ++ G +++LN Sbjct: 286 GYTIVTTSSHKGSQDLAKAKLPAKMVLVLGQESDGLSDSTWDQGDMSLYIGGTGKVESLN 345 Query: 265 VSNAAAVALYITQNH 279 VS A + L Sbjct: 346 VSVATGIMLAQWWQQ 360 >gi|161502249|ref|YP_001569361.1| putative methyltransferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863596|gb|ABX20219.1| hypothetical protein SARI_00277 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 345 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 93/244 (38%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K+ G E H G+ T+ + ++ L+ + +PHN+G ++RS Sbjct: 161 ELAKVSGTE-HHGGVCFLIKKRNGMTVKQWVKQAADQDCVLALEDIANPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I ++ D L G+ + SSD Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L +K+ L+LG E L +E ++ G +++LNVS A V L Sbjct: 279 RGQALFGATLPEKMVLVLGREYDFLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|284989250|ref|YP_003407804.1| RNA methyltransferase, TrmH family, group 3 [Geodermatophilus obscurus DSM 43160] gi|284062495|gb|ADB73433.1| RNA methyltransferase, TrmH family, group 3 [Geodermatophilus obscurus DSM 43160] Length = 319 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 15/240 (6%) Query: 42 HTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK----NALARLDWDANLPHPFPVKT 95 ++ L G + V AL P+ ++ + + P+ Sbjct: 67 QRAEEAPELLLGRNPVVEALRAEIPATALYVVTGDARTATDERITEALHLANDRGLPLLE 126 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIG 148 V D++ A+HQG+ L+ P D L++ +D V DP N+G Sbjct: 127 VGKAEFDRMS-NGALHQGIGLQVPPYQYAHPDDLLDLARDSGRPPLVVAMDGVTDPRNLG 185 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A++RSA AF G++ +R S +A ++++GA +P R NL AL G Sbjct: 186 AVVRSAAAFDAHGVVVPQRRSVGMTASAWRTSAGAAARLPVARAVNLARALASYQDAGLM 245 Query: 209 TIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 T+GL+ D L D +AL++GAEG GL +E + + + ++LNVS Sbjct: 246 TVGLAGDGDVDLHDFDGFPDPLALVVGAEGAGLSRLVRERCDVVVRIPIARDTESLNVSV 305 >gi|194334722|ref|YP_002016582.1| tRNA/rRNA methyltransferase SpoU [Prosthecochloris aestuarii DSM 271] gi|194312540|gb|ACF46935.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris aestuarii DSM 271] Length = 265 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 97/248 (39%), Gaps = 6/248 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWDANLP 88 K+ +QK ++ + G+ TVS L PS + L L Sbjct: 14 IKRFARLHQK-KYREREGCFLAEGLRTVSELLRQMPSVEALVALFVGADQLALIPFPERY 72 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + + + + ++ + + A L++ LD V DP N+G Sbjct: 73 RE-KLFLLEQEEMRRLAATTTSQGVIGVFRMGSEDRLSRADEGPSLVVALDDVQDPGNVG 131 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R+A F +I+ + + + +S++G+L + +L L ++ + GF Sbjct: 132 TIIRTAAWFGAAAVISGRGTADCYNPKSVRSSAGSLYGLELYSADDLGVELGRLQARGFH 191 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM---PGIIKALNV 265 + S ++ ++ L++G E G+ Q+ + SM + +++LN Sbjct: 192 IVTASLQGTDIRAFKVWPPRLVLVIGNEANGVSLPIQKISDSMVMIPHGPASPHVESLNA 251 Query: 266 SNAAAVAL 273 + +AA+ + Sbjct: 252 AVSAAILI 259 >gi|297572188|ref|YP_003697962.1| RNA methyltransferase, TrmH family, group 3 [Arcanobacterium haemolyticum DSM 20595] gi|296932535|gb|ADH93343.1| RNA methyltransferase, TrmH family, group 3 [Arcanobacterium haemolyticum DSM 20595] Length = 327 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 112/249 (44%), Gaps = 15/249 (6%) Query: 46 PENLFLYGVHTVSAALNNP---SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + G + V + + SR + A + V +D Sbjct: 75 EGYELVSGRNPVVEIVASGIPFSRVFVVGSLANDERVATVLRAATESGAELIEVTRFELD 134 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155 K+ + VHQG+ALE P ++ L++ LD V DPHN+GA +RSA Sbjct: 135 KMTDGQ-VHQGIALEIPPYEYVDVEELVALGHDHLEPGLIVALDSVTDPHNLGAAMRSAS 193 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF DG++ +R S +A + K ++GA +P R +NL AL+ + + G+ +GL Sbjct: 194 AFRADGVLIPERRSAGVNATVWKVSAGAAARVPVARETNLVRALEDLKAQGYFVVGLDGG 253 Query: 216 SKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ D + ++ G+EGKGL ++T +A + + +++LN + A +ALY Sbjct: 254 GDATVDTLDMADVPLVIVTGSEGKGLSRLVRDTCDVIASIPIASDMESLNAAVATGIALY 313 Query: 275 IT---QNHF 280 + +F Sbjct: 314 QIDVKRRNF 322 >gi|282859569|ref|ZP_06268674.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010] gi|282587797|gb|EFB92997.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010] Length = 252 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 35/254 (13%), Positives = 81/254 (31%), Gaps = 28/254 (11%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K +S + K + + G V+ L ++ + ++ + + Sbjct: 20 KIKLYRSLDTK-KGREKANLFIAEGPKVVNDLLQAGFEA-EEIFEDIEDIKKITFLQHPQ 77 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V + + L + +L + LD V DP N+G Sbjct: 78 SMLGVFKL-------------------KQVPNLQEDVFTFFPSQKLSLALDGVQDPGNLG 118 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I + + + ++ G++ + S L Sbjct: 119 TIIRIADWFGIENIYCSPNTVDCWNPKVVQATMGSIARVNIHYTSLLEFVDS---LPLNY 175 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264 I + + Q+ + +++G EG G+ + ++ ++ ++LN Sbjct: 176 PIYATLLDGNNIYQQDLTEYGVIVMGNEGNGISTELRQKINHKLYIPNYPADRSSAESLN 235 Query: 265 VSNAAAVALYITQN 278 V+ A A+ + Sbjct: 236 VAIATAIVCAEFRR 249 >gi|262273555|ref|ZP_06051369.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Grimontia hollisae CIP 101886] gi|262222533|gb|EEY73844.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Grimontia hollisae CIP 101886] Length = 230 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 57/151 (37%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ P+NI AI+R+A A + + + SA Sbjct: 16 RQPDLTVCMEEVHKPNNISAIIRTADAVGIHQVHAVWPKNSKMRTLGGTSAGARNWVDVV 75 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + S++ + A+++G E G+ + A Sbjct: 76 THDNTPDAFAALKAKGMQILVTNLSETAVDFREIDYTKPTAIVMGQEKTGISQQALALAD 135 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 136 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 166 >gi|163814438|ref|ZP_02205827.1| hypothetical protein COPEUT_00589 [Coprococcus eutactus ATCC 27759] gi|158450073|gb|EDP27068.1| hypothetical protein COPEUT_00589 [Coprococcus eutactus ATCC 27759] Length = 301 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 101/265 (38%), Gaps = 35/265 (13%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQL--------LATKNALAR------------------ 80 + + ALN + L K + + Sbjct: 34 GLFIAESPNVIQRALNAGYEPVSILIEKKQLDRWMQKESAMKSAMESMSDQIDLPAGNNG 93 Query: 81 ------LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134 L+ + PV T + + K+ G + L +L ++ Sbjct: 94 DPADVVLEHIMAIGGDIPVYTAEYEVLKKLTGFALIRGLLCAMRRKVLPSPEGVCSDAHR 153 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + VL++V +P N+GAI RSA A D ++ T S A+ + G + IP+ I + Sbjct: 154 IAVLENVMNPINVGAIFRSAAALGMDAVLLTGGCSDPLYRRSARVSMGTVFQIPWTYIGD 213 Query: 195 LTDALQKMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 +T + +H+ GF+ + + + +K+A+ILG EG+GL+ T + Sbjct: 214 MTAGMDILHAMGFKTASMALRNDTIDINDPRLKEVEKLAVILGTEGEGLKTSTIYASDFT 273 Query: 252 AHLHMPGIIKALNVSNAAAVALYIT 276 + M + +LNV+ A+AVA + Sbjct: 274 IKIPMFHGVDSLNVATASAVAFWEL 298 >gi|332160630|ref|YP_004297207.1| putative methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604499|emb|CBY25997.1| hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] [Yersinia enterocolitica subsp. palearctica Y11] gi|325664860|gb|ADZ41504.1| putative methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 368 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 87/250 (34%), Gaps = 14/250 (5%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 118 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 177 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL----------LMVLDHVNDPHNIGA 149 + K G E H G+ + Q ++ L+ V +PHN+G Sbjct: 178 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDGIVKDCVLALEDVGNPHNLGG 236 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+ F +G++ + + ES ++A G EHI I + L G+ Sbjct: 237 IMRTCAHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTI 295 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + SS L + K+ L+LG E GL + + G +++LNVS A Sbjct: 296 VTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGKVESLNVSVAT 355 Query: 270 AVALYITQNH 279 + L Sbjct: 356 GILLSEWWRQ 365 >gi|238752954|ref|ZP_04614415.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia rohdei ATCC 43380] gi|238708815|gb|EEQ01072.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia rohdei ATCC 43380] Length = 371 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 125 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 184 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154 + K G E H G+ + Q ++ L+ V +PHN+G I+R+ Sbjct: 185 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAQDCVLALEDVGNPHNLGGIMRTC 243 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F +G++ + + ES ++A G EHI I + L G+ + SS Sbjct: 244 AHFGINGVLL-QDPAILESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 302 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + K+ L+LG E GL + + G +++LNVS A + L Sbjct: 303 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLA 362 Query: 275 ITQNH 279 Sbjct: 363 EWWRQ 367 >gi|238795639|ref|ZP_04639154.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia mollaretii ATCC 43969] gi|238720758|gb|EEQ12559.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia mollaretii ATCC 43969] Length = 358 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 112 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 171 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154 + K G E H G+ + Q ++ L+ V +PHN+G I+R+ Sbjct: 172 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMRTC 230 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F +G++ + + ES ++A G EHI I + L G+ + SS Sbjct: 231 AHFGINGVLL-QDPAILESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 289 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + K+ L+LG E GL + + G +++LNVS A + L Sbjct: 290 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLA 349 Query: 275 ITQNH 279 Sbjct: 350 EWWRQ 354 >gi|46191103|ref|ZP_00120535.2| COG0566: rRNA methylases [Bifidobacterium longum DJO10A] gi|189439683|ref|YP_001954764.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|296453794|ref|YP_003660937.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp. longum JDM301] gi|189428118|gb|ACD98266.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|296183225|gb|ADH00107.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. longum JDM301] Length = 292 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 40/272 (14%), Positives = 84/272 (30%), Gaps = 24/272 (8%) Query: 26 NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++ +++ +++ + + G +V A+ + L + Sbjct: 9 DNPKSDRVRRIADLTRAKGRERSGRFLIEGPQSVREAVTWRPDVVQDLYVEVSQALEHPR 68 Query: 84 DAN--LPHPFP--------VKTVPPQTIDKIVGKEAVHQGLALETAPL---LSPTLDAVR 130 + L V + +I + + L Sbjct: 69 IISSTLEKIVETSQDATIYVHYCTGDVMHRISPDAQGIVAVGNAESMHAGADDVELGKNG 128 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-- 188 + V DP N G ++R+A A CD +I + + +S +G+L H+P Sbjct: 129 RGPQIAAFWQVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVL 188 Query: 189 -YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------KIALILGAEGKGLR 241 T + + + K + D A++ G E +GL Sbjct: 189 AMSTDEFFTWTGDHNMGVWAADVYGTEECKPESLPAVLADKAAVEAPKAVLFGNEARGLE 248 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 P + + + G ++LN+ +AAV L Sbjct: 249 PDILTRCGRIVSIPLYGKAESLNLGTSAAVML 280 >gi|86141309|ref|ZP_01059855.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] gi|85831868|gb|EAQ50323.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] Length = 237 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 92/252 (36%), Gaps = 23/252 (9%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S QK ++ Q + G+ + L++ + L A + Sbjct: 6 QIKLITSLAQK-KYRQQNALFVVEGIKGIREFLDSSY-VLHSLYALEGVF---------- 53 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V P + KI + + LAL + L+ QL++ D V DP N+G Sbjct: 54 EDQDTTEVSPAELKKISFLKTPQKALALF--EIPKQRLEIKSGFQLVL--DEVRDPGNLG 109 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++R + + +I +++ + + ++ G+L + + + S Sbjct: 110 TLIRLCDWYGIEHLICSEQTVDCFNPKVVQATMGSLTRVNLVYTDL-----ETYLSKQKL 164 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVS 266 + + + + + ++ L+LG E G+ E + G ++LNV+ Sbjct: 165 PVYGAFMDGENVYRSQLPEEAILVLGNEANGVSAAVSEKIQQKISIPQFGSSTTESLNVA 224 Query: 267 NAAAVALYITQN 278 A A+ + + Sbjct: 225 IAGAILVSEFKR 236 >gi|37675829|ref|NP_936225.1| rRNA methylase [Vibrio vulnificus YJ016] gi|37200368|dbj|BAC96195.1| rRNA methylase [Vibrio vulnificus YJ016] Length = 244 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N + K+ Q+ AT L + + Sbjct: 8 KLLRALGQK-KQRKALGLFLVQGEKNVLE-LANSTLKVKQVFATAEFLQQHAVELA---G 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + + K + + A + P ++ + L++ LD V+DP N+G I Sbjct: 63 YECIEASLDDLTKASTLVSNNA----AIAVVEIPAIETPKAQGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II + + + + G+ + + + Q + Sbjct: 119 IRVADWYGIKHIIASSDCADPYNPKTISATMGSFGRVQVSLVDLPSYLEQANLPIYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K + + L++G+E G+R + + T + G ++LNV+ A Sbjct: 179 EGESVHK-----TTFSAQGILLMGSESHGVREQASKFVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNIRRQ 242 >gi|89900788|ref|YP_523259.1| tRNA/rRNA methyltransferase SpoU [Rhodoferax ferrireducens T118] gi|89345525|gb|ABD69728.1| tRNA/rRNA methyltransferase (SpoU) [Rhodoferax ferrireducens T118] Length = 264 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 94/254 (37%), Gaps = 6/254 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ K ++ Q + + + G H +AAL + + L Sbjct: 11 SRDNAFLKDLRRLAQDNTGYRKQGRFWAEGEHLGAAALARHVTPAIGVF--SESFWPLAP 68 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 +P I G E+ Q P + A++ ++LD V D Sbjct: 69 AKYAQAAIKSIVIPDSLFAAISGLESPAQMG----FVFDLPLVAALQPVMASVILDRVQD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G+ILRSA AF +I K + S + ++ GA + I L D Sbjct: 125 AGNVGSILRSASAFGFKQVIALKGTAALWSPKVLRAGMGAHWGLQLIEGVALADLALLAV 184 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + S + + + A LG EG+G+ + + A + PG ++L Sbjct: 185 PIVVTSSHRGSYLHQAIANQALPMPCAWALGHEGQGVSAELEALARLHVRIAQPGGEESL 244 Query: 264 NVSNAAAVALYITQ 277 NV+ AAA+ L+ + Sbjct: 245 NVAAAAAICLHASA 258 >gi|238765059|ref|ZP_04625995.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia kristensenii ATCC 33638] gi|238696745|gb|EEP89526.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia kristensenii ATCC 33638] Length = 365 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 118 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 177 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154 + K G E H G+ + Q ++ L+ V +PHN+G I+R+ Sbjct: 178 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMRTC 236 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F +G++ + + ES ++A G EHI I + L G+ + SS Sbjct: 237 AHFGINGVLL-QDPAVLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 295 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + K+ L+LG E GL + + G +++LNVS A + L Sbjct: 296 HKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDVSVSIGGTGKVESLNVSVATGILLA 355 Query: 275 ITQNH 279 Sbjct: 356 EWWRQ 360 >gi|329947308|ref|ZP_08294575.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral taxon 170 str. F0386] gi|328525525|gb|EGF52569.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral taxon 170 str. F0386] Length = 332 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 71/266 (26%), Positives = 116/266 (43%), Gaps = 16/266 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW----D 84 K+++ K R + L G + V+ A S I ++ +A + Sbjct: 65 RAKQLEKL--KRRFDVPEGHEILCGRNAVAEA-AYASVPITRVFMAVSAQSDERLGAVVR 121 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMV 137 PV +D + A HQG+A+E T + + LL+ Sbjct: 122 RAALLGAPVLETTRLDLDALTDSAA-HQGVAIEVPAYEYTTARDLLDRARSLERTPLLVA 180 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD V DPHN+GA+LRSA AF DG+I +R S +A + K ++GA + R +NL Sbjct: 181 LDQVTDPHNLGAVLRSAGAFGADGVIIPERRSVGVNATVWKVSAGAAARVRVARETNLVR 240 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHM 256 AL+++ G +GL +E D + L+ GAEG GL +ET +A + + Sbjct: 241 ALEQVKREGCFVVGLDGSGSTDIEDLTLADSPLVLVTGAEGAGLSRLVRETCDVLASVPI 300 Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282 +++LN + A ++LY + Sbjct: 301 SRSVESLNAAVATGISLYEVDRLRRR 326 >gi|239995992|ref|ZP_04716516.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii ATCC 27126] Length = 235 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 2/152 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L++V+ PHN+ A++R+ A + T + + Sbjct: 16 RQTDLTVCLENVHKPHNVSAVVRTCDAVGIHRVHTV--WEKKYQFRRGTAMGSQQWVRQT 73 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + SD+ A++ G E G + + A Sbjct: 74 NHDNINDAMAELKGQGMQVLVTHLSDTAVDFRDIDYTKPTAILFGQEKYGASDEAKAIAD 133 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G++++LNVS AAA+ LY Q Sbjct: 134 QDIVIPMMGMVQSLNVSVAAALVLYEAQRQRT 165 >gi|297571531|ref|YP_003697305.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum DSM 20595] gi|296931878|gb|ADH92686.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum DSM 20595] Length = 298 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 50/273 (18%), Positives = 89/273 (32%), Gaps = 33/273 (12%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98 + + Q E + G V AL R I + T+ AL R L T Sbjct: 21 RRKMRVQYEQAIVEGPQGVREALLCYERGIRDVYVTQEALERHPDIDALLRRVDPYTHIL 80 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 A+ P D + +L++ DP N+G I+R A A Sbjct: 81 PNELCSSVAPNSQGIFAVIAIPDEEDIRDIFAHGKLVVCALESVDPGNVGTIIRCADACG 140 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D +I + + + + +S++G+ HIP + ++ D + GFQ + + Sbjct: 141 ADAVILGRGSVEATNPKVMRSSAGSYFHIPILEDEDVADVVAHAREAGFQILIADGRGEY 200 Query: 219 PLEQ---------------------------------EIKNDKIALILGAEGKGLRPKTQ 245 L Q ++G E G + Sbjct: 201 DLGQLADQALLESEGAQCGAAAQAGSAESAAEPGSAAIDLRRPTLWMVGNEAHGFTDEQY 260 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + + M G ++LNV+ A ++ L+ + Sbjct: 261 GYADGLVRIPMWGASESLNVAMATSICLFSSAR 293 >gi|223646822|gb|ACN10169.1| rRNA methyltransferase 1, mitochondrial precursor [Salmo salar] gi|223672681|gb|ACN12522.1| rRNA methyltransferase 1, mitochondrial precursor [Salmo salar] Length = 288 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 63/261 (24%), Positives = 108/261 (41%), Gaps = 24/261 (9%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW-----DANLPHPF 91 ++ L+GV AL R +L + +R + Sbjct: 19 RERLSKEEHRNYETLFGVSPCLLALTQGRRNAHRLFVKEGEASRRASVRQVCEEAHRQGV 78 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-------NSQLLMVLDHVNDP 144 P++ V ++K+ VHQGL L+ + L T D + L +VLD V DP Sbjct: 79 PIQRVSKNDLNKMCS-GGVHQGLCLQASCLGFLTDDKTSKPPRDSSHIPLWLVLDGVQDP 137 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GAILRSA D + ++ R S + V++K++SG +E + +LTD L+ + Sbjct: 138 MNLGAILRSAYFLGVDRVASSLRNSCPLTPVVSKASSGVMEVMRVYGYDSLTDMLKVKLA 197 Query: 205 WGFQTI-------GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL--- 254 G+Q I + + L++G EG+GL + + M + Sbjct: 198 QGWQVIGTVGAEAENAHVPVMKCSKFQMTKPTLLLMGGEGEGLSRELRLQCEVMLTIIPR 257 Query: 255 -HMPGIIKALNVSNAAAVALY 274 + +++LNVS A + L+ Sbjct: 258 RDLHPGVESLNVSVATGILLH 278 >gi|119025947|ref|YP_909792.1| rRNA methylase [Bifidobacterium adolescentis ATCC 15703] gi|118765531|dbj|BAF39710.1| possible rRNA methylase [Bifidobacterium adolescentis ATCC 15703] Length = 290 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 85/270 (31%), Gaps = 24/270 (8%) Query: 27 HRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 + ++++ ++ + + + G +V L+ + L + Sbjct: 10 NPRAERVRRVSELADRKGRKRSGRFMVEGPQSVRELLSWHPDIVEDLYVEVVSAEPDAAF 69 Query: 85 A----------NLPHPFPVKTVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLDAVRNSQ 133 + V V + + + V + + Sbjct: 70 ITPTVAQMAGKAMQAGAYVHKVTHAVMQHMSSDAQGVLAVADMRAFLDSAVIDGDFDERT 129 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ V DP N G ++RSA A C G++ + + +S +G+L H+P + + Sbjct: 130 MVAAFWQVRDPGNAGTVIRSADAAGCAGVVLVDDCVDIFNPKVIRSTAGSLFHLPVVSMG 189 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL----------ILGAEGKGLRPK 243 + G E D +A+ + G E +GL Sbjct: 190 TD-EYFDWCAERGLAVYAADVYGTDARPPEPLTDVLAVPQSLAQAKTVLFGNEARGLTQD 248 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E + + + G ++LN+ +AAV L Sbjct: 249 VLERVDRIVSIPIYGKAESLNLGTSAAVML 278 >gi|157963692|ref|YP_001503726.1| tRNA guanosine-2'-O-methyltransferase [Shewanella pealeana ATCC 700345] gi|157848692|gb|ABV89191.1| tRNA guanosine-2'-O-methyltransferase [Shewanella pealeana ATCC 700345] Length = 228 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 1/154 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L + LD V+ +NI A+LR+A A + ++ Sbjct: 15 NRQPDLTVCLDTVHKGNNIAAVLRTADAAGIHEV-HAVWSELEMRVSGNTASGSQQWVKT 73 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + S SD+ +I+G E G+ P+ A Sbjct: 74 RVHQSMAQAVEAFRDQDMQILATTFSDTAVDFRAIDYTKPTVVIMGNERDGVSPEGIAAA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G++++LNVS AAA+ +Y Q + Sbjct: 134 DQHIIIPMIGMVQSLNVSVAAALIMYEAQRQRTE 167 >gi|258627222|ref|ZP_05722010.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258580524|gb|EEW05485.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 244 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 91/249 (36%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L + + K+ + AT L AN+ Sbjct: 8 KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LASSTLKVQNIFATAEF---LAEHANVLAG 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + K+ + + A + P ++ + L++ LD V+DP N+G I Sbjct: 63 NECTEAALDDLTKVSTLVSNNA----AIAVVEIPRIEVPKAQGLMIGLDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II ++ + + + G+ + ++ + + Sbjct: 119 IRLADWYGIQHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S + + L++G+E G+R + + T + G ++LNV+ A Sbjct: 179 EGVSVHQ-----TAFKAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNIRRQ 242 >gi|224283924|ref|ZP_03647246.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB 41171] gi|310288277|ref|YP_003939536.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17] gi|311065139|ref|YP_003971865.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum PRL2010] gi|313141076|ref|ZP_07803269.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB 41171] gi|309252214|gb|ADO53962.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17] gi|310867459|gb|ADP36828.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum PRL2010] gi|313133586|gb|EFR51203.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB 41171] Length = 332 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 114/250 (45%), Gaps = 26/250 (10%) Query: 50 FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + G + V AL + + + R + +D+I Sbjct: 69 LVIGRNAVLEALRVGVPSMQLYIATRIEHDDRTREIIKLAGAQSLHLLEADRLEMDRIA- 127 Query: 107 KEAVHQGLALETAPLLSPTLD---------------------AVRNSQLLMVLDHVNDPH 145 + + HQG+ L+ P +L + L + LD V DP Sbjct: 128 RSSNHQGVVLKVQPYQYSSLAELADIAERKAKAMDVVNSPSARINARPLFIALDGVTDPQ 187 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA++RSA AF +G+I +R S S +A K ++GA HIP R+ NLT A++ M Sbjct: 188 NLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHIPVARVVNLTKAIESMRER 247 Query: 206 GFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G+ T+GL K + + D + ++LG+EGKGL +E+ ++A + + ++++LN Sbjct: 248 GYYTVGLDGGGDKLVGETGFETDPLIVVLGSEGKGLSRLVRESCDAIAGIPITSMVESLN 307 Query: 265 VSNAAAVALY 274 S AA ++LY Sbjct: 308 ASVAAGISLY 317 >gi|163803682|ref|ZP_02197544.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4] gi|159172521|gb|EDP57384.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4] Length = 244 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 84/249 (33%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N S + Q+ AT L + + N Sbjct: 8 KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSSLTVKQIFATAEFLGQHSKELNGFES 65 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 +V A A + P L L++ LD V+DP N+G I Sbjct: 66 VEASLDDLTKASTLVSNNA-------AIAVVEIPELKVPEAKGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II + + + + G+ + + + + Sbjct: 119 IRVADWYGIQHIIASTDCADPYNPKTISATMGSFGRVQVSLVDLPSYLEDANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K + L++G+E G+R + T + G ++LNV+ A Sbjct: 179 EGESVHK-----TEFSADGILLMGSESHGVREAASKFVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNMRRQ 242 >gi|157371980|ref|YP_001479969.1| putative methyltransferase [Serratia proteamaculans 568] gi|157323744|gb|ABV42841.1| tRNA/rRNA methyltransferase (SpoU) [Serratia proteamaculans 568] Length = 366 Score = 96.1 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 89/244 (36%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V + Sbjct: 122 RRQRAEETRVYGENACQALFASRPDAIVRAWFVQSVTPRFREALRWMAANRKAYHVVDEE 181 Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ L ++ L+ V +PHN+GAI+RS Sbjct: 182 ELAKASGTE-HHGGVCFLIKKRQGLDAQTYLKEAPAKDCVLALEEVGNPHNLGAIVRSCA 240 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F +G++ + + ES ++A G EHI I + L G+ + SS Sbjct: 241 HFGVNGVLL-QDPAVLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYAIVTTSSH 299 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 PL Q K+ L+LG E GL + + G +++LNVS A + L Sbjct: 300 KGTPLAQAKLPAKMVLVLGQERDGLSDSAWQQGDMNVSIGGTGKVESLNVSVATGILLAD 359 Query: 276 TQNH 279 Sbjct: 360 WWRQ 363 >gi|317052474|ref|YP_004113590.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5] gi|316947558|gb|ADU67034.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5] Length = 248 Score = 96.1 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 100/280 (35%), Gaps = 33/280 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M LI+ + Y+++ Q +R + + + G V Sbjct: 1 MKLITSP------------------ANPTYRQLLRLLQ-ARGIRKYQQALVSGEKIVREL 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + S ++ L+++ + + + P+ ++ + + A Sbjct: 42 LASGSPEVLALVSSSRH-----ENIEGLNAVSRLVLEPELFRQLDVCGTDFPLVLVRCAQ 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + + N+G++LRS+VAF I+ ++ + +++ Sbjct: 97 PVEWAGSLPVGTCVALAFQDP---ENVGSVLRSSVAFGVRDILLLEQCASPFLPKAIRAS 153 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 +GA+ H R H I S KPL + + +D L+ G EG G+ Sbjct: 154 AGAVFH---CRFFAGPRLEDIFHLPYPGQIVSLSAEGKPLAETVFSDPTMLVPGIEGAGI 210 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +E + + M +++LN + A ++ LY Sbjct: 211 PARWREQS---VSIPMDAGVESLNAAVATSIVLYHMAQRR 247 >gi|189347569|ref|YP_001944098.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245] gi|189341716|gb|ACD91119.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245] Length = 263 Score = 96.1 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 98/248 (39%), Gaps = 8/248 (3%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--IFQLLATKNALARLDWDANLPH 89 K+ + ++ F G TVS L + LL + A + + Sbjct: 13 KLYGKLHQKKYRDSEGLFFTEGFRTVSELLEALPEPGLLDALLFREGEQAAEGFYGSYSG 72 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V T+ + ++ + L + S L++ LD V DP N G Sbjct: 73 R--VFTLTEKECARLSQTATPSGIFGVFRQQSALPFEPERTDGSSLIVALDDVQDPGNAG 130 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ILR+A F D +I + + +A +S++G++ +P+ + +L L ++ G+ Sbjct: 131 TILRTAAWFGADAMICSAGTADRYNAKAVRSSAGSIYALPHYGVDSLETELLRLAGRGYA 190 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNV 265 I S + E +K L++G E G+ Q A + + G +++LN Sbjct: 191 VIASSLAGQDFREFTSWPEKQVLVIGNEANGVSRPVQALAGRLVRIPHIGSKPRVESLNA 250 Query: 266 SNAAAVAL 273 S +AA+ + Sbjct: 251 SVSAAILM 258 >gi|123443445|ref|YP_001007418.1| putative methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090406|emb|CAL13274.1| putative trna/rRNA methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 368 Score = 96.1 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 87/250 (34%), Gaps = 14/250 (5%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 118 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 177 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL----------LMVLDHVNDPHNIGA 149 + K G E H G+ + Q ++ L+ V +PHN+G Sbjct: 178 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDGIVKDCVLALEDVGNPHNLGG 236 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+R+ F +G++ + + ES ++A G EHI I + L G+ Sbjct: 237 IMRTCAHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTI 295 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + SS L + K+ L+LG E GL + + G +++LNVS A Sbjct: 296 VTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDVSVSIGGTGKVESLNVSVAT 355 Query: 270 AVALYITQNH 279 + L Sbjct: 356 GILLSEWWRQ 365 >gi|71894373|ref|YP_278481.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53] gi|71851161|gb|AAZ43770.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53] Length = 233 Score = 96.1 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 92/234 (39%), Gaps = 6/234 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 F+ G ++ A+ + L + + F V+ + + K+ Sbjct: 5 FIGGKNSTLDAIESKLNLKRIYL-----SKKENLKYFKNTNFKVEILSNLELSKLTNNAN 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 +A ++++VLDH+ D +N+GAI+RSA A I+ K Sbjct: 60 HQGFVAELDFTYSDINKIYESKPKIVLVLDHIMDTYNLGAIIRSANAAGIKDIVMPKENC 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228 ++ + K +SG I + ++S+L L K+ + G + N Sbjct: 120 ADITSNVLKVSSGGFIGINFYKVSSLNAFLNKLKKHSYWIYGSMLDKNSTSYYSAKYNFP 179 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +A ILG E KG+ H+ G +++LNVS AA + L+ ++ + Sbjct: 180 MAFILGNEEKGISKSALVEVDEKIHIPQSGSVESLNVSVAAGILLFDIKHKVNE 233 >gi|188524104|ref|ZP_03004184.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867706|ref|ZP_03079707.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273459|ref|ZP_03205995.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|195659743|gb|EDX53123.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660561|gb|EDX53817.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249979|gb|EDY74759.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 239 Score = 96.1 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 101/233 (43%), Gaps = 10/233 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 +G + A+ N + I ++ + + + + V + + Sbjct: 5 FGKKALLDAI-NNKQIISKVYLLEKNY--ELINLINKNQISYEVVNERWFKQFDHSLNHQ 61 Query: 112 QGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 T L + + L+++LD + DP N GAI+R+A AF DGII Sbjct: 62 NIAFKLVKKSFQKTSLESFLKLIKKQENALILMLDEIEDPRNFGAIIRTANAFGVDGIIY 121 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 K + S + ++ K++ GA+ +I I +SNL++A++ + + GF S + E+ Sbjct: 122 KKYHQASINDLVIKTSMGAINYIHMIEVSNLSNAIKNLQNEGFWVYATSLLKSQSYEKVD 181 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +K I+G E KG+ P + A + M G +++LNV A + L + Sbjct: 182 YANKSVFIVGNESKGVSPLILKNADQSVRIDMFGDVQSLNVGVATGIILAHYR 234 >gi|269977219|ref|ZP_06184192.1| rRNA methyltransferase [Mobiluncus mulieris 28-1] gi|269934522|gb|EEZ91083.1| rRNA methyltransferase [Mobiluncus mulieris 28-1] Length = 307 Score = 96.1 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 96/265 (36%), Gaps = 16/265 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY ++ N + ++ + L R LL T + L L Sbjct: 44 DYTNLKDVNLRRSFEAEHGLFLAESNEVIMRVLRAGYRP-RSLLVTPHWLEILAPVLAST 102 Query: 89 H---------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 P PV ++++VG +A P L + S+ ++VL+ Sbjct: 103 SCTHGDPEGGPIPVFVATEAVLEQLVGFHLHRGAIASMERPALPDPAAILAQSRRVLVLE 162 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + D N+GA +RSA A + D I+ T + + + G + +P+ R+ DA Sbjct: 163 DLVDHTNVGAAVRSAAACNYDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPDAD 222 Query: 200 QKMHSWGF------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + + K+AL+ GAE GL+ T A + Sbjct: 223 LFHAAGFELAALALRDDAVDLRDYARKLAGDSTRKVALVAGAERDGLKRSTVAKADYVVR 282 Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278 + M + +LNV+ A AVA + Sbjct: 283 IEMAHGVDSLNVAGACAVACWAIAQ 307 >gi|33596189|ref|NP_883832.1| putative RNA methyltransferase [Bordetella parapertussis 12822] gi|33573192|emb|CAE36844.1| putative RNA methyltransferase [Bordetella parapertussis] Length = 274 Score = 96.1 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 83/258 (32%), Gaps = 8/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ K + + L GVH A L + + L A Sbjct: 23 SRDNPAVKALHKLAAGGGRRD--GRILLDGVHLCQAWLAHQGTPLQALFDV--ARLDHPE 78 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 L P + + G +V G + R + ++ D + D Sbjct: 79 IRALAGQVPPQHCLALDSRLLQGLASVESGQGVVFVARAPEPALPERIDENCVLFDRIQD 138 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LR+ A ++ + + S + +S GA + I D + Sbjct: 139 PGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHF---ALHIHEHLDLEAVLP 195 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKA 262 + + L + A + G EG+G+ A H+ +++ Sbjct: 196 RLDVPLVATTLARSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHESAAVES 255 Query: 263 LNVSNAAAVALYITQNHF 280 LNV AAA+ L+ + Sbjct: 256 LNVGAAAAICLFEQRRQR 273 >gi|33592532|ref|NP_880176.1| putative RNA methyltransferase [Bordetella pertussis Tohama I] gi|33572178|emb|CAE41724.1| putative RNA methyltransferase [Bordetella pertussis Tohama I] gi|332381950|gb|AEE66797.1| putative RNA methyltransferase [Bordetella pertussis CS] Length = 257 Score = 96.1 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 83/258 (32%), Gaps = 8/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ K + + L GVH A L + + L A Sbjct: 6 SRDNPAVKALHKLAAGGGRRD--GRILLDGVHLCQAWLAHQGTPLQALFDV--ARLDHPE 61 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 L P + + G +V G + R + ++ D + D Sbjct: 62 IRALAGQVPPQHCLALDSRLLQGLASVESGQGVVFVARAPEPALPERIDENCVLFDRIQD 121 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LR+ A ++ + + S + +S GA + I D + Sbjct: 122 PGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHF---ALHIHEHLDLEAVLP 178 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKA 262 + + L + A + G EG+G+ A H+ +++ Sbjct: 179 RLDVPLVATTLARSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHESAAVES 238 Query: 263 LNVSNAAAVALYITQNHF 280 LNV AAA+ L+ + Sbjct: 239 LNVGAAAAICLFEQRRQR 256 >gi|320533712|ref|ZP_08034329.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral taxon 171 str. F0337] gi|320134073|gb|EFW26404.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral taxon 171 str. F0337] Length = 264 Score = 96.1 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 70/266 (26%), Positives = 115/266 (43%), Gaps = 16/266 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW----D 84 K+++ K R + L G + V+ A S I ++ +A + Sbjct: 3 RAKQLEKI--KRRFDVPEGHEILCGRNAVAEA-AYASVPITRVFMAVSAQSDERLGAVVR 59 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMV 137 PV +D + A HQG+A+E T + + LL+ Sbjct: 60 RAALLGAPVLETTRLDLDALTDSAA-HQGVAIEVPAYEYTTARDLLERARALGRTPLLVA 118 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD V DPHN+GA+LRSA AF DG+I +R S +A + K ++GA + R +NL Sbjct: 119 LDQVTDPHNLGAVLRSAGAFGADGVIIPERRSVGVNATVWKVSAGAAARVRVARETNLVR 178 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHM 256 AL+++ G +GL +E D + L+ GAEG GL +ET + + + Sbjct: 179 ALEQLKKEGCFVVGLDGSGSTAVEDLTLADSPLVLVTGAEGAGLSRLVRETCDVLVSVPI 238 Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282 +++LN + A ++LY + Sbjct: 239 SRSVESLNAAVATGISLYEVDRLRRR 264 >gi|56412529|ref|YP_149604.1| methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361464|ref|YP_002141100.1| methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56126786|gb|AAV76292.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092940|emb|CAR58370.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 345 Score = 96.1 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDGA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ + ++ L+ V +PHN+G ++RS Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I ++ D L G+ + SSD Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L +K+ L+LG E L +E ++ G +++LNVS A V L Sbjct: 279 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|313888401|ref|ZP_07822069.1| RNA methyltransferase, TrmH family [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845598|gb|EFR32991.1| RNA methyltransferase, TrmH family [Peptoniphilus harei ACS-146-V-Sch2b] Length = 248 Score = 96.1 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 93/257 (36%), Gaps = 15/257 (5%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL--ARL 81 +N+ YK ++ +K +H + + + + A +I L +++A + Sbjct: 5 SKNNNTYKFLKGLLEK-KHRQESKLFMVEKPVVIEEA---EGFEIKYLALSESAYRSNKF 60 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + + + A D R S + LD + Sbjct: 61 EKIIKNLDQDKIFVFSDNIFKNLCDAVTSPG----IIAYYSYLRRDFDRTSGKFLYLDDI 116 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 +P N+G I+RSA A DG+I + + +S+ ++ +P ++ + Sbjct: 117 REPGNLGGIIRSADALGLDGLIISPESCDLYNPKTVRSSMSSIFRLPIYFMAR-----ED 171 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + F + S ++ DK +++G E KG+ A ++ + + Sbjct: 172 LVDLDFNILATSLENSTSTRDYDFKDKDIVVIGNEAKGVSDFLMTHAKGFLNIPISDKVD 231 Query: 262 ALNVSNAAAVALYITQN 278 +LN + AA++ +Y Sbjct: 232 SLNANVAASIIIYEMMK 248 >gi|126307628|ref|XP_001370730.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1 homolog [Monodelphis domestica] Length = 425 Score = 96.1 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 101/263 (38%), Gaps = 27/263 (10%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTI 101 P L+G+ + AL R + +LL K PV+ + + + Sbjct: 117 PRLEILFGLAPCTLALRAARRAVTRLLLQKGVVGSGPRAEVARDAEALGIPVQLMRRREL 176 Query: 102 DKIV--------GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 D + E + + + +L ++L+ + DP N+GA+LRS Sbjct: 177 DALCRGQIHQGLCMEVAPLLPKAWPEGRENEPREDPASRRLWLILEEIQDPRNLGAVLRS 236 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI--- 210 A D +IT++R S + V++K+++G +E + +L L+ G+ Sbjct: 237 AHFLGVDKVITSRRNSCPLTPVVSKASAGTMEVMDVFATDDLPGLLKVKAQQGWLVAGTV 296 Query: 211 --------GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL----HMPG 258 S + + + L+LG EG GL + + + + +P Sbjct: 297 GCPGSVVPQCSDIPITSCLEFLWDRSTLLVLGNEGSGLSHEIRNLCHILLTILPGRELPP 356 Query: 259 IIKALNVSNAAAVALYITQNHFA 281 +++LNVS AA + L+ + Sbjct: 357 EVESLNVSVAAGILLHSIISQRK 379 >gi|260778120|ref|ZP_05887013.1| RNA methyltransferase TrmH family [Vibrio coralliilyticus ATCC BAA-450] gi|260606133|gb|EEX32418.1| RNA methyltransferase TrmH family [Vibrio coralliilyticus ATCC BAA-450] Length = 245 Score = 96.1 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 93/249 (37%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N ++ Q+ AT L + + + Sbjct: 8 KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LVNSELQVKQIFATGEF---LTANQSQLND 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K + + A + P++ + L++ LD V+DP N+G I Sbjct: 63 FECIEASLDDLTKASTLVSNNA----AIAVVEIPSVKVPQAQGLIIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + I+ +K + + + G+ + ++ + Q + Sbjct: 119 IRVADWYGIKHIVASKDCADPYNPKTISATMGSFGRVTVSQLDLPSYLEQASIPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K N + L++G+E G+R + + T + G ++LNV+ A Sbjct: 179 EGESIHK-----TEFNAEGILLMGSESHGIREQAAKFVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNLRRQ 242 >gi|88857415|ref|ZP_01132058.1| RNA methyltransferase, TrmH family protein [Pseudoalteromonas tunicata D2] gi|88820612|gb|EAR30424.1| RNA methyltransferase, TrmH family protein [Pseudoalteromonas tunicata D2] Length = 261 Score = 96.1 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 43/248 (17%), Positives = 94/248 (37%), Gaps = 14/248 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ NQK ++ Q + + G V L + + Q+ AT + +A H Sbjct: 26 KLIRALNQK-KYRKQHQLFLVQGEKNVVELLGSDFE-VDQIFATHSFIAEHSDALRNQH- 82 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 V + ++K + + LA+ + +++ LD V+DP N+G I Sbjct: 83 --VIETDEEQLEKASTLISNNAALAIVKMKQKAVP----EPKGMMLALDGVSDPGNLGTI 136 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II + + + + G+ + ++ + + Sbjct: 137 IRVADWYGITHIIASDDCADPYNPKTISATMGSFSRVHVSQVDLPSYLNNAALPIYGAYL 196 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G + + + +++G+E G+RP + T + G ++LNV+ A Sbjct: 197 GGENVHQ-----VSFAKEGIILMGSESHGIRPLAGQHVTQKITIPAFGQAESLNVAMATG 251 Query: 271 VALYITQN 278 + L + Sbjct: 252 IILDNVRR 259 >gi|315127927|ref|YP_004069930.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas sp. SM9913] gi|315016441|gb|ADT69779.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas sp. SM9913] Length = 228 Score = 96.1 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 1/152 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIP 188 R + L + L+ V+ HN+ AI+R+A A C + + + + L+ Sbjct: 16 RQTDLTVCLEDVHKHHNLSAIVRTADAVGCHHVHAVWPEKQKWLTNNTSGGSKNWLDTHL 75 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + I + +++ + S+ + A+I+G E G+ K E A Sbjct: 76 HKNIDDAAASIRAHNPDVQILATHLSEDAVDFREIDYTKPTAIIVGQEKTGISEKALEYA 135 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS AAA+ L+ Q Sbjct: 136 DQNIIIPMQGMVQSLNVSVAAALILFEAQRQR 167 >gi|262276699|ref|ZP_06054495.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium HIMB114] gi|262225137|gb|EEY75593.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium HIMB114] Length = 233 Score = 96.1 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 106/223 (47%), Gaps = 1/223 (0%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 ++ G H+V +A+ N +I Q+L +N ++D Sbjct: 3 KFWIAGKHSVISAVLNKHNEIHQILL-QNIEHKIDLPKEFHRIVKKIEKDEINKILDNYP 61 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + HQG + S + + + L++LD + D NIGAI+R+A AF+ II K+ Sbjct: 62 DISHQGFFAQIERNYSNNKEELFKEKNLIMLDGLTDQRNIGAIIRTASAFNIKQIIINKK 121 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + + +L K+ASG ++ I + SN+ + +++ + G +SK ++ + ++ Sbjct: 122 DIVTSNLLLNKTASGGMDLINIFQTSNIINLFKELKKKDYWFYGFDGNSKTIFKKNLLSE 181 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 K I G+EGKGLR ++ + +++ + +LNVS + A Sbjct: 182 KNVFIFGSEGKGLREIIKKNCDHLVRININNKVDSLNVSASVA 224 >gi|261212101|ref|ZP_05926387.1| RNA methyltransferase TrmH family [Vibrio sp. RC341] gi|260838709|gb|EEX65360.1| RNA methyltransferase TrmH family [Vibrio sp. RC341] Length = 244 Score = 96.1 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 87/249 (34%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N + + + AT LA Sbjct: 8 KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLNVQHIFATAEFLAEHAQALAGFES 65 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + +V A A + P ++ + L++ LD V+DP N+G I Sbjct: 66 IEATLDDLTKVSTLVSNNA-------AIAVVAIPHIEVPKAQGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II ++ + + + G+ + ++ + + Sbjct: 119 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S + + L++G+E G+R + + T + G ++LNV+ A Sbjct: 179 EGVSVHQ-----TAFKAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNIRRQ 242 >gi|154488654|ref|ZP_02029503.1| hypothetical protein BIFADO_01961 [Bifidobacterium adolescentis L2-32] gi|154082791|gb|EDN81836.1| hypothetical protein BIFADO_01961 [Bifidobacterium adolescentis L2-32] Length = 290 Score = 96.1 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 85/270 (31%), Gaps = 24/270 (8%) Query: 27 HRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 + ++++ ++ + + + G +V L+ + L + Sbjct: 10 NPRAERVRRVSELADRKGRKRSGRFMVEGPQSVRELLSWHPDIVEDLYVEVVSAEPDAAF 69 Query: 85 A----------NLPHPFPVKTVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLDAVRNSQ 133 + V V + + + V + + Sbjct: 70 ITPTVAQMAGKAMQTGAYVHKVTHAVMQHMSSDAQGVLAVADMRAFLDSAVIDGDFDERT 129 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ V DP N G ++RSA A C G++ + + +S +G+L H+P + + Sbjct: 130 MVAAFWQVRDPGNAGTVIRSADAAGCAGVVLVDDCVDIFNPKVIRSTAGSLFHLPVVSMG 189 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL----------ILGAEGKGLRPK 243 + G E D +A+ + G E +GL Sbjct: 190 TD-EYFDWCAERGLAVYAADVYGTDARPPEPLTDVLAVPQSLAQAKTVLFGNEARGLTQD 248 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E + + + G ++LN+ +AAV L Sbjct: 249 VLERVDRIVSIPIYGKAESLNLGTSAAVML 278 >gi|170076759|ref|YP_001733397.1| RNA methyltransferase [Synechococcus sp. PCC 7002] gi|169884428|gb|ACA98141.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7002] Length = 219 Score = 96.1 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 2/153 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L ++++ V+ PHNI AI+R+ A + + + + + E Sbjct: 16 RQPDLTVLMEDVHKPHNISAIIRTCDAVGVMAVHAMNQVADGDVLDTYSQVAQGSEKWVD 75 Query: 190 IRISNLTD--ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + Q SD A+++GAE G+ E Sbjct: 76 LNRHPDVTVAIDQLHQQNFKIYAAHLSDRAVDYRTIDYTQPTAILMGAERWGVSDTAAEL 135 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS AAAV L+ Q Sbjct: 136 VDGHIIIPMLGMVQSLNVSVAAAVILFEAQRQR 168 >gi|153950911|ref|YP_001402163.1| methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|152962406|gb|ABS49867.1| RNA methyltransferase, TrmH family [Yersinia pseudotuberculosis IP 31758] Length = 395 Score = 96.1 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 148 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFRDALKWMAANRKAYHVVEED 207 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154 + K G E H G+ + Q ++ L+ V +PHN+G I+R+ Sbjct: 208 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEEVGNPHNLGGIMRTC 266 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F +G++ + + ES ++A G EHI I + L G+ + SS Sbjct: 267 AHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 325 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + K+ L+LG E GL + + G +++LNVS A + L Sbjct: 326 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLA 385 Query: 275 ITQNH 279 Sbjct: 386 EWWRQ 390 >gi|256370003|ref|YP_003107514.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915] gi|256000166|gb|ACU48565.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915] Length = 276 Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 66/280 (23%), Positives = 118/280 (42%), Gaps = 18/280 (6%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + +F + D+ +L +RD ++ ++ R G V Sbjct: 1 MQDIDTRSHDCVFVIDDADDIRLAP-YRDIREKDLVGRQQR-------FIAEG-KVVLNV 51 Query: 61 L--NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L ++ + LL +N L L LP PV +VP +D I G VH+G+ Sbjct: 52 LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAIAGFH-VHRGILAV 110 Query: 118 TAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 P L + L++VL +++ N+G+I R+A AF D ++ + Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + + GA +PY + D + GF + L+ + + + + ++ AL+L Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 G EG+GL + E A + M +LNV+ A+ +AL Sbjct: 231 GTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 269 >gi|170047080|ref|XP_001851065.1| Rnmtl1 protein [Culex quinquefasciatus] gi|167869628|gb|EDS33011.1| Rnmtl1 protein [Culex quinquefasciatus] Length = 446 Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 47/300 (15%), Positives = 100/300 (33%), Gaps = 30/300 (10%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 K S+ S + Y KL+++ Y + + + + L G + + Sbjct: 150 KSSKAFDSKRKLEYLKLKQSDSLYGDLSLLVKSRKRRELKCKMVLEGKRLIKDGIEAGLS 209 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 + N + +LD D + + V + + + + P + Sbjct: 210 TDIIVF---NDVTKLD-DLKIDKSVNLVQVERNVMQEWSSVTTCPGLIGIFRKPKDMNKI 265 Query: 127 DAVRNS----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 S + +V D++ +P+N+G+I+RS+ A I+ K + + A+G Sbjct: 266 VIQNRSLIPLPITVVCDNIREPNNLGSIIRSSAAIPTGRIVLLKGCTCPWDPKCLRGATG 325 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQ---------TIGLSSDSKKPLEQEIKNDKIALIL 233 A IP + + + + G S + + + L + Sbjct: 326 AQFRIPISGPVAMDELEELIPPNATFLVADNKTGRIDGKFSFCRYDAANYREMQHVVLFI 385 Query: 234 GAEGKGLRPKTQETAT-------------SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G E G+ + T H+ + I++LN ++A +V LY + Sbjct: 386 GGETLGISNDVRRFITGFTEKSLNDTSVCYNVHIPLANGIESLNTASALSVLLYEIKRQL 445 >gi|292900306|ref|YP_003539675.1| RNA methyltransferase [Erwinia amylovora ATCC 49946] gi|291200154|emb|CBJ47280.1| putative RNA methyltransferase [Erwinia amylovora ATCC 49946] gi|312173349|emb|CBX81604.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 344 Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 86/243 (35%), Gaps = 6/243 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + TV Sbjct: 101 RRQRMEETRVYGENACQALFQSRPESIVRAWFLQSVTPRFREALKWMAANRKAYHTVDDA 160 Query: 100 TIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K G V + +S L ++ L+ + +PHN+G I+RS Sbjct: 161 ELQKASGTEHHGGVCFLIKKRVGMPVSEWLAQSGQKDCVVALEDIGNPHNLGGIMRSCAH 220 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F G++ S ES ++A G EH+ I + L G+ + SS Sbjct: 221 FGAKGLLV-DDASLLESGAAVRTAEGGAEHVQAISGESFAAGLDAFRQAGYTIVTTSSHQ 279 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 PL ++ L+LG E GL + + + G +++LNVS A V L Sbjct: 280 GVPLSSAELPARMVLVLGQERDGLSDSSFQRGDLSVSIGGTGNVESLNVSVATGVLLAEW 339 Query: 277 QNH 279 Sbjct: 340 WRQ 342 >gi|292489188|ref|YP_003532075.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430] gi|291554622|emb|CBA22290.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430] Length = 344 Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 86/243 (35%), Gaps = 6/243 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + TV Sbjct: 101 RRQRMEETRVYGENACQALFQSRPESIVRAWFLQSVTPRFREALKWMAANRKAYHTVDDA 160 Query: 100 TIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + K G V + +S L ++ L+ + +PHN+G I+RS Sbjct: 161 ELQKASGTEHHGGVCFLIKKRVGMPVSEWLAQSGQKDCVVALEDIGNPHNLGGIMRSCAH 220 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F G++ S ES ++A G EH+ I + L G+ + SS Sbjct: 221 FGAKGLLV-DDASLLESGAAVRTAEGGAEHVQAISGESFAAGLDAFRQAGYTIVTTSSHQ 279 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 PL ++ L+LG E GL + + + G +++LNVS A V L Sbjct: 280 GVPLSSAELPARMVLVLGQERDGLSDSSFQQGDLSVSIGGTGNVESLNVSVATGVLLAEW 339 Query: 277 QNH 279 Sbjct: 340 WRQ 342 >gi|325283202|ref|YP_004255743.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP] gi|324315011|gb|ADY26126.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP] Length = 260 Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 56/255 (21%), Positives = 96/255 (37%), Gaps = 4/255 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K++ R + + G + AL L A Sbjct: 9 QNPTVKRLVRLRSSRRLREGEGTVLIEGARETARALAAGWAAGELYLCPALFSPEAAELA 68 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V + + K+ G+E L L P + LL+VL + P Sbjct: 69 PQLPMSAVTELSAEAFAKVSGRENPDGVLLLSRPPQERWP--TLPPQALLVVLHGLEKPG 126 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GAILR+ DG++ R + S + +++ G++ +P + +AL + Sbjct: 127 NVGAILRTVDGVGADGVLILGRGADPYSPNVIRASQGSVFTVPLRQQDEA-EALAWLEEE 185 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 GF + + D+ + Q ++AL+LG E +GL + S + M G +LNV Sbjct: 186 GFTLVACTPDAPRTFWQADLTGRVALLLGTEHEGLPEHWRRH-ESAVSIPMRGQADSLNV 244 Query: 266 SNAAAVALYITQNHF 280 + AAAV LY Sbjct: 245 ATAAAVVLYEALRQR 259 >gi|315442740|ref|YP_004075619.1| rRNA methylase [Mycobacterium sp. Spyr1] gi|315261043|gb|ADT97784.1| rRNA methylase [Mycobacterium sp. Spyr1] Length = 271 Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 55/254 (21%), Positives = 103/254 (40%), Gaps = 6/254 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D++ + S +++ S + GV V L + LL T L L D + Sbjct: 17 DFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFVP-RALLGTDRRLTELGTDLDGL 75 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + + + +G LA + + + ++ + VL+ VND N+G Sbjct: 76 A-APFYRATAEVMAEAIGFHLNRGVLASASRAPELTVAEVLDGARTVAVLEGVNDHENLG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++ R+A D +I + + + G +P+ R +N L + F+ Sbjct: 135 SVFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPFARAANWPADLNILRDNDFR 194 Query: 209 TIGLSSDSKKPLEQEI----KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + ++ D P + ++IA+++GAEG GL+ T +A + M +LN Sbjct: 195 LLAMTPDPTVPTLADAVSGLTEERIAILVGAEGPGLKEHTMRSADVRVRIPMARGTDSLN 254 Query: 265 VSNAAAVALYITQN 278 V+ AAA+A Y Sbjct: 255 VATAAALAFYERDR 268 >gi|229015494|ref|ZP_04172492.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1273] gi|229021703|ref|ZP_04178285.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1272] gi|228739571|gb|EEL89985.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1272] gi|228745781|gb|EEL95785.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1273] Length = 198 Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 9/194 (4%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHN 146 + P + +D++V E HQG+ + A L+ ++LD + DPHN Sbjct: 2 QHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHN 59 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G+I+R+A A GII KR + +A +AK+++GA+E+IP R++NL+ + ++ G Sbjct: 60 LGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERG 119 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G + K I L++G+EGKG+ E + L M G + +LN S Sbjct: 120 LWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNAS 179 Query: 267 NAAAVALYITQNHF 280 AA++ +Y Sbjct: 180 VAASLLMYEVYRKR 193 >gi|332139565|ref|YP_004425303.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327549587|gb|AEA96305.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] Length = 235 Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 2/152 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L++V+ PHN+ AI+R+ A + T + + Sbjct: 16 RQTDLTVCLENVHKPHNVSAIVRTCDAVGIHRVHTV--WEKKYQFRRGTAMGSQQWVRQT 73 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + SD+ A++ G E G + + A Sbjct: 74 NHDGINDAMAELKGQGMQVLVTHLSDTAVDFRDVDYTKPTAILFGQEKYGATDEAKALAD 133 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G++++LNVS AAA+ LY Q Sbjct: 134 QDIVIPMMGMVQSLNVSVAAALVLYEAQRQRT 165 >gi|188994636|ref|YP_001928888.1| probable tRNA/rRNA methyltransferase [Porphyromonas gingivalis ATCC 33277] gi|188594316|dbj|BAG33291.1| probable tRNA/rRNA methyltransferase [Porphyromonas gingivalis ATCC 33277] Length = 254 Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 51/259 (19%), Positives = 94/259 (36%), Gaps = 19/259 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S ++ ++ + + + G V L P + L+ T L + P Sbjct: 6 QIKFLRSLRER-KYRLREQAFAVEGPKLVGEML--PFYRCRMLVGTAAMLR----AVSTP 58 Query: 89 HPFPVKTVPPQ-TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 H V +P +I + + +A+ P + L ++LD V DP N+ Sbjct: 59 HDAEVVELPESFDFKRISTQTSPQPLMAVFDLPAEPEPV----VEGLTLLLDGVQDPGNV 114 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSW 205 G ILR+A F + + S + +++ GAL + + N D + Sbjct: 115 GTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYFRRQGI 174 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-----GII 260 L S + L+LG+EG G+ P+ T + G Sbjct: 175 PVYGAFLEGQSLYEAPLPNFTEPAILVLGSEGHGISPEVAAEITDRLTIPASGLSVKGHT 234 Query: 261 KALNVSNAAAVALYITQNH 279 ++LNV+ A A+ + Sbjct: 235 ESLNVAIATAILCSEWRRR 253 >gi|154509194|ref|ZP_02044836.1| hypothetical protein ACTODO_01715 [Actinomyces odontolyticus ATCC 17982] gi|153798828|gb|EDN81248.1| hypothetical protein ACTODO_01715 [Actinomyces odontolyticus ATCC 17982] Length = 290 Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 47/270 (17%), Positives = 102/270 (37%), Gaps = 23/270 (8%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY +++ +S+ + + + A+ L ++ L L Sbjct: 18 DYTRLKDVKLRSKIEPERGLYMAESANVIERAIRAGHTP-RSFLMSRRWLPTLTNLIEAA 76 Query: 89 HP------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLL 135 P+ ++++ G +H+G + PTL ++ + Sbjct: 77 TGGPDGADVPIFVADEDVLEQMTGFH-LHRGALAAMQRPVLPTLADLLATARGGAPARRV 135 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL+++ D N+GA RSA A D ++ T + + + + G + +P+ R+ + Sbjct: 136 VVLENLVDHTNVGAAFRSAAALGIDTVLVTPQCADPLYRRSVRVSMGTVFQVPWTRLESW 195 Query: 196 TDALQKMHSWGF--------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + GF D + + ++A+++G EG GL T Sbjct: 196 PGDIATLQEAGFTVASLALSDDSVSLDDFAALPALQGPDARLAMVMGTEGDGLGRHTIAA 255 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + M + +LNV+ A+AV + T+ Sbjct: 256 SDYTVKIPMDHGVDSLNVAAASAVVFWATR 285 >gi|325110483|ref|YP_004271551.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM 5305] gi|324970751|gb|ADY61529.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM 5305] Length = 270 Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 52/274 (18%), Positives = 103/274 (37%), Gaps = 23/274 (8%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 KI SL+D A+ R KS + + G V L + Sbjct: 5 KIDSLQDDRLAQYR----------DLRNKSHYRT-TGYFVAEGWRVVERLLRSGLTVDSI 53 Query: 71 LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD--- 127 L++ + A + A+ V +P + +++VG H G+ +P+L Sbjct: 54 LVSERRAELMVPKFADRA---DVLILPQREAEELVGY-NFHGGVLASALKPDNPSLSALL 109 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + ++ H+ P N+G++ R A F GI+ + + + G + + Sbjct: 110 NGPPTAPVLCCPHLTGPDNLGSLTRLAAGFGAAGILLGEGSVDPYLRRCVRVSMGTIFQM 169 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-----DKIALILGAEGKGLRP 242 P ++ LQ++ + + + DS++ + L+LG E GL Sbjct: 170 PIRTAESVLAELQQLKTEHNCDLLAAEDSEQSRPLYELPAATPGKRRVLLLGNEADGLGQ 229 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + ++ + M + +LN++NAA + LY Sbjct: 230 PFLKLVDAVYDIPMADGVDSLNIANAAGIFLYEL 263 >gi|260771994|ref|ZP_05880911.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio metschnikovii CIP 69.14] gi|260612861|gb|EEX38063.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio metschnikovii CIP 69.14] Length = 228 Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A I + + SA Sbjct: 16 RQTDLTVCLEEVHKPNNVSAVIRTADAVGLHQI-HAVWPNEQMRTLSHTSAGARNWVEVQ 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S L + + S+ A+I G+E G+ P+ + A Sbjct: 75 THNSTLEAVSHLKETGMQILVTNLSEHAIDFRAIDYTQPTAIIFGSEKSGISPQALQLAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 HDIVIPMVGMVQSLNVSVASALILYEAQRQR 165 >gi|168238343|ref|ZP_02663401.1| RNA methyltransferase, TrmH family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735064|ref|YP_002115660.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204929676|ref|ZP_03220750.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194710566|gb|ACF89787.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288803|gb|EDY28176.1| RNA methyltransferase, TrmH family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204321395|gb|EDZ06595.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322613365|gb|EFY10307.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620431|gb|EFY17296.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625101|gb|EFY21930.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629455|gb|EFY26231.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633842|gb|EFY30581.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635448|gb|EFY32159.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639876|gb|EFY36555.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644238|gb|EFY40782.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649930|gb|EFY46350.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654887|gb|EFY51204.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658185|gb|EFY54451.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661743|gb|EFY57961.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669724|gb|EFY65870.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673269|gb|EFY69374.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674942|gb|EFY71029.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682965|gb|EFY78983.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685626|gb|EFY81621.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323191946|gb|EFZ77184.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200421|gb|EFZ85502.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201320|gb|EFZ86387.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208391|gb|EFZ93331.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211534|gb|EFZ96372.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215965|gb|EGA00697.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221746|gb|EGA06154.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225646|gb|EGA09873.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229364|gb|EGA13488.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235321|gb|EGA19405.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237493|gb|EGA21556.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245248|gb|EGA29249.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246473|gb|EGA30454.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253996|gb|EGA37818.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259046|gb|EGA42694.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261969|gb|EGA45534.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267752|gb|EGA51233.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269689|gb|EGA53141.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 345 Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ + ++ L+ V +PHN+G ++RS Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I ++ D L G+ + SSD Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L +K+ L+LG E L +E ++ G +++LNVS A V L Sbjct: 279 RGQALFSTTLPEKMVLVLGREYDFLPEAAREPGDLCVKINGTGNVESLNVSVATGVLLAE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|238759744|ref|ZP_04620903.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia aldovae ATCC 35236] gi|238702070|gb|EEP94628.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia aldovae ATCC 35236] Length = 296 Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 49 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFRDALKWMAANRKAYHVVEED 108 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154 + K G E H G+ + Q ++ L+ V +PHN+G I+R+ Sbjct: 109 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMRTC 167 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F +G++ + + ES ++A G EHI I + L G+ + SS Sbjct: 168 AHFGINGVLL-QDPAILESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 226 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L + K+ L+LG E GL + + G +++LNVS A + L Sbjct: 227 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDVSVSIGGTGKVESLNVSVATGILLA 286 Query: 275 ITQNH 279 Sbjct: 287 EWWRQ 291 >gi|167622328|ref|YP_001672622.1| tRNA guanosine-2'-O-methyltransferase [Shewanella halifaxensis HAW-EB4] gi|167352350|gb|ABZ74963.1| tRNA guanosine-2'-O-methyltransferase [Shewanella halifaxensis HAW-EB4] Length = 228 Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 55/153 (35%), Gaps = 1/153 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L + LD V+ +NI A+LR+A A + ++ Sbjct: 15 NRQPDLTVCLDTVHKGNNIAAVLRTADAAGIHEV-HAVWSELEMRVSGNTASGSQQWVKT 73 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + S + SD+ + A+ILG E G+ P A Sbjct: 74 RVHQSMQQAVDEFRGKEMQILATTFSDTAVDFREIDYTRPTAIILGNERDGVSPAGIAAA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G++++LNVS AAA+ +Y Q Sbjct: 134 DQHIIIPMIGMVQSLNVSVAAALIMYEAQRQRT 166 >gi|171920305|ref|ZP_02931653.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171920685|ref|ZP_02931909.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178781|ref|ZP_02964580.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024333|ref|ZP_02997010.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518553|ref|ZP_03004014.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|209554566|ref|YP_002284546.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550909|ref|ZP_03771858.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551088|ref|ZP_03772034.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171902719|gb|EDT49008.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171903421|gb|EDT49710.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209398|gb|EDU06441.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019013|gb|EDU57053.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997944|gb|EDU67041.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|209542067|gb|ACI60296.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378903|gb|EEH01268.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225380063|gb|EEH02425.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 239 Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 97/233 (41%), Gaps = 10/233 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 +G + A+ N L +KN + + + V + Sbjct: 5 FGKKALLDAIGNKQSISKVYLLSKNY---ELINLINKNKITYEIVNEAWFKQFDHSLNHQ 61 Query: 112 QGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 T L + + L+++LD + DP N GAI+R+A AF D II Sbjct: 62 NIAFKLVKKNFQKTGLESFLKLIKDKKNALVLILDEIEDPRNFGAIIRTANAFGVDAIIY 121 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 K + S + ++ K++ GA+ +I I ++NL++ ++ + GF S +P E+ Sbjct: 122 KKHHQASINDLVIKTSMGAINYIYMIEVNNLSNTIKNLQDEGFWVYATSLLKSQPYEKVD 181 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +K I+G E KG+ P + A + M G +++LNV A + L + Sbjct: 182 YANKTVFIVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIILAHYR 234 >gi|258619991|ref|ZP_05715031.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258587724|gb|EEW12433.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 260 Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 98/272 (36%), Gaps = 19/272 (6%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67 + + F + +K K +++ QK + + G V L + + K Sbjct: 6 YNSRAFIWDSTMISKT-----QLKLIRALGQK-KQRKAHSLFLVQGEKNVLE-LASSTLK 58 Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 + + AT L AN+ + + K+ + + A + P ++ Sbjct: 59 VQNIFATAEF---LAEHANVLAGYECTEAALDDLTKVSTLVSNNA----AIAVVEIPRIE 111 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + L++ LD V+DP N+G I+R A + II ++ + + + G+ + Sbjct: 112 VPKAQGLMIGLDGVSDPGNLGTIIRLADWYGIQHIIASQDCADPYNPKTISATMGSFGRV 171 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 ++ + + S + + L++G+E G+R + + Sbjct: 172 QVSQVDLPDYLAKANLPVYGAFLEGVSVHQ-----TAFKAEGILLMGSESHGIREQAAQY 226 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 T + G ++LNV+ A + L + Sbjct: 227 VTDKITIPAFGGAESLNVAMATGIILDNIRRQ 258 >gi|308370136|ref|ZP_07420416.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu002] gi|308370524|ref|ZP_07421873.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu003] gi|308371788|ref|ZP_07426239.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu004] gi|308374122|ref|ZP_07434956.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu006] gi|308375279|ref|ZP_07443391.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu007] gi|308376535|ref|ZP_07439209.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu008] gi|308377535|ref|ZP_07479580.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu009] gi|308325225|gb|EFP14076.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu002] gi|308331651|gb|EFP20502.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu003] gi|308335372|gb|EFP24223.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu004] gi|308342913|gb|EFP31764.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu006] gi|308346741|gb|EFP35592.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu007] gi|308350655|gb|EFP39506.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu008] gi|308355315|gb|EFP44166.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu009] Length = 257 Score = 95.7 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 96/250 (38%), Gaps = 6/250 (2%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 M S +++ + + GV V L + + L T LA L D P Sbjct: 1 MNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPL-ALFGTDRRLAELKDDLA-GVGAP 58 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + +++G LA V ++ + VL+ VND N+G+I R Sbjct: 59 YYRASADVMARVIGFHLNRGVLAAARRVPEPSVAQVVAGARTVAVLEGVNDHENLGSIFR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A S D ++ + + + G +PY R ++ L + GF+ + + Sbjct: 119 NAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFRLLAM 178 Query: 213 SSDSKKPLEQ----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + + +++IAL++GAEG GL + + M +LNV+ A Sbjct: 179 TPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATA 238 Query: 269 AAVALYITQN 278 AA+A Y Sbjct: 239 AALAFYERTR 248 >gi|239636367|ref|ZP_04677369.1| RNA methyltransferase, TrmH family [Staphylococcus warneri L37603] gi|239597722|gb|EEQ80217.1| RNA methyltransferase, TrmH family [Staphylococcus warneri L37603] Length = 246 Score = 95.7 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 13/232 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + GVH + A + I QL + D F + +++ Sbjct: 27 TGLALIEGVHLIEEAYQSG-LVIEQLFVVDPSRTDSDLIEYANETFEINLKVAESL---- 81 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 QG ++ ++++D + DP N+G ++R+A A D I+ Sbjct: 82 SGTVTPQGFFAVIKKPDYDV----TTAKQVLLIDRIQDPGNLGTLIRTADAAGIDLIVME 137 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 K + + +++ G++ HIP I S + + + K+ QE Sbjct: 138 KGTADPYQDKVLRASQGSVFHIPVISESLQSYINTFNGPVYGTALDNAVSFKEIEAQETF 197 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ALILG EG+G+ P E T + + G ++LNV+ A ++ LY + Sbjct: 198 ----ALILGNEGEGVDPALLEHTTQNITIPIYGQAESLNVAIAGSILLYQLK 245 >gi|13357681|ref|NP_077955.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761850|ref|YP_001752207.1| RNA methyltransferase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508755|ref|ZP_02958228.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|11357049|pir||A82931 rRNA methylase UU124 [imported] - Ureaplasma urealyticum gi|6899082|gb|AAF30530.1|AE002113_4 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827427|gb|ACA32689.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675688|gb|EDT87593.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 239 Score = 95.7 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 53/233 (22%), Positives = 96/233 (41%), Gaps = 10/233 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 +G + A+ N L +KN + + + V + Sbjct: 5 FGKKALLDAIGNKQSISKVYLLSKNY---ELINLINKNKITYEIVNEAWFKQFDHSLNHQ 61 Query: 112 QGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 T L + + L+++LD + DP N GAI+R+A F D II Sbjct: 62 NIAFKLVKKNFQKTSLESFLKLIKDKKNALVLILDEIEDPRNFGAIIRTANGFGVDAIIY 121 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 K + S + ++ K++ GA+ +I I ++NL++ ++ + GF S +P E+ Sbjct: 122 KKHHQASINDLVIKTSMGAINYIYMIEVNNLSNTIKNLQDEGFWVYATSLLKSQPYEKVD 181 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +K I+G E KG+ P + A + M G +++LNV A + L + Sbjct: 182 YANKTVFIVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIILAHYR 234 >gi|332995098|gb|AEF05153.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas sp. SN2] Length = 243 Score = 95.7 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 2/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L++V+ PHN+ A++R+ A + T + + Sbjct: 16 RQTDLTVCLENVHKPHNVSAVVRTCDAIGIHRVHTV--WEEKYQFRGDTAMGSQQWVRQT 73 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S + SD+ + A+I G E G + A Sbjct: 74 NHDSLGNAIGALKQQGMQVLVTHLSDTAVGFREVDYTKPTAIIFGQERYGATDEAIAMAD 133 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS AAA+ LY Q Sbjct: 134 QDIIIPMAGMVQSLNVSVAAALVLYEAQRQR 164 >gi|307720229|ref|YP_003891369.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM 16294] gi|306978322|gb|ADN08357.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM 16294] Length = 250 Score = 95.7 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 99/230 (43%), Gaps = 8/230 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG + + L + S +I +L + + + + +I Sbjct: 20 LYGRNVIVEILQDKSIEIHKLHLADSNKPDGAVKKILLLAKERDIEIVKHDKAALSRISK 79 Query: 107 KEAVHQGLALETAPLLSPTLDAVRN--SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+A++ ++ ++ L+ LD + +P N+G I+RS A + DGII Sbjct: 80 NAKQDQGVAIDIISKTYLHVNMLKELTKYRLIALDGIQNPQNLGMIIRSCAAGNIDGIIL 139 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 K+ S S ++ K+++G L +P + L + L + T+ + + QE Sbjct: 140 PKKNSAKISPLVVKASAGTLFKLPIYFCNTLQEVLTEQQEAKIYTLSSYAKTTIYDIQE- 198 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++K +LG E +G+ + + + + M +++LNV+ A++ + Sbjct: 199 -SEKTIYVLGNENEGVSHEVAKLCNNSVSIPMNRGVESLNVAVTASLIAF 247 >gi|294010791|ref|YP_003544251.1| RNA methyltransferase [Sphingobium japonicum UT26S] gi|292674121|dbj|BAI95639.1| RNA methyltransferase [Sphingobium japonicum UT26S] Length = 246 Score = 95.7 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 130/221 (58%), Gaps = 9/221 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 YG H V AAL NP R + ++ T+ AL LD LP P+ + ++V +A H Sbjct: 18 YGRHAVIAALANPDRVVRKIWGTREALNALD----LPPVLPIVYADGADLGRMVPSDAPH 73 Query: 112 QGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 QG+ E PL L + + ++VLD V DPHN+GAILRSA AF I+T Sbjct: 74 QGIVAEVEPLDDVWLGDVLEAGQDDKRPVLVLDQVTDPHNVGAILRSAAAFDALCIVTQD 133 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R++P ES VLA+SASGALE +P++R+ NL AL ++ G+ IGL ++++ L + I Sbjct: 134 RHAPPESGVLARSASGALEIVPWVRVVNLARALDEIAEAGYWRIGLDGEAEQTLGEAIGT 193 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 ++AL+LGAEG+GLR + +A L + +++LNVSN Sbjct: 194 SRVALVLGAEGEGLRHNSMAHCDILAKLPISPRMESLNVSN 234 >gi|256845158|ref|ZP_05550616.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2] gi|294785543|ref|ZP_06750831.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_27] gi|256718717|gb|EEU32272.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2] gi|294487257|gb|EFG34619.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_27] Length = 258 Score = 95.7 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 89/277 (32%), Gaps = 27/277 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K+++ I SLK K + G Sbjct: 3 MEIIESKENKLIKSLKKLKQKK-------------------YRDSENKFLAEGYK----F 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+ ++ + ++ V + +++ ++ Sbjct: 40 LDYNYSPEMIIVREDIFQSNFYFEKINKFSCKKIVVTRKIFEELSSQKNSQG----IIIL 95 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T D S L++LD V+DP N+G I+R A + II TK + + + ++ Sbjct: 96 YNKKTNDLKSPSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRAT 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ ++ + + + P + +K +I G EG G+ Sbjct: 156 MGSILNVNLYYLEKSEIINFLKENNYSIISTYLDKTAIPYNKIKLKEKNVIIFGNEGNGI 215 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + ++LNV+ A + LY + Sbjct: 216 SDDFINITDYKTIIPILSNTESLNVAVATGIILYKFR 252 >gi|297624314|ref|YP_003705748.1| tRNA guanosine-2'-O-methyltransferase [Truepera radiovictrix DSM 17093] gi|297165494|gb|ADI15205.1| tRNA guanosine-2'-O-methyltransferase [Truepera radiovictrix DSM 17093] Length = 221 Score = 95.7 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + ++ G E G+ + + A + + M G++++LNVS AAAV L+ Q Sbjct: 104 YREVDYTRPTCVLFGNEKHGVSREAADAADAHIVIPMLGMVQSLNVSVAAAVILFEAQRQ 163 Query: 280 F 280 Sbjct: 164 R 164 >gi|300744017|ref|ZP_07073037.1| putative 23S rRNA methyltransferase [Rothia dentocariosa M567] gi|300380378|gb|EFJ76941.1| putative 23S rRNA methyltransferase [Rothia dentocariosa M567] Length = 302 Score = 95.7 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 56/289 (19%), Positives = 105/289 (36%), Gaps = 41/289 (14%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALAR---LDW 83 + + + + R ++ + + G V AL + + + T++A R + Sbjct: 8 RVRDIAKLSTR-RGRTKKKQFMVEGPQAVREALKAHLQSPVLDAVYVTESAYERHPDIAE 66 Query: 84 DANLPHPFP---------VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN--- 131 H P ++ V + + + +A+ S ++ N Sbjct: 67 LLEQAHGTPTPEEGRRVFMRVVTDEVLAAMADSVTPQGIIAISFMVDTSFSVLWGENALN 126 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +L+ VL + DP N G ILR A A D +ITTK + +S +G+L H+P I+ Sbjct: 127 PKLIAVLSRIQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKTVRSTAGSLFHVPIIQ 186 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----------------------EIKNDK 228 L + + + S G + L+ + Sbjct: 187 GVELEEFAEDVKSQGTVVLAADGYGTVNLQDLIDHAAVLRAGLDGEAPAGVKGAFDLSRP 246 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + G E +GL + + AT + + G ++LNV AAA+ LY + Sbjct: 247 TMWLFGNEAQGLSAEEKSAATMRIAVPVYGAAESLNVGTAAAICLYASA 295 >gi|189465794|ref|ZP_03014579.1| hypothetical protein BACINT_02156 [Bacteroides intestinalis DSM 17393] gi|189434058|gb|EDV03043.1| hypothetical protein BACINT_02156 [Bacteroides intestinalis DSM 17393] Length = 253 Score = 95.7 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 81/255 (31%), Gaps = 16/255 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S K ++ + G V L L AT L++ Sbjct: 7 RIKYIHSLELK-KNRKTEKVFLAEGPKLVGDLL--GHFPCRFLAATPEWLSQHPKLPVE- 62 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V V + + + Q + T +V + L + LD V DP N+G Sbjct: 63 ---DVSEVSDEDLSR-ASLLKTPQQVLAIFEQPEYETDASVISHSLCLALDDVQDPGNLG 118 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I + + A + T + S Sbjct: 119 TIIRLADWFGIEHIFCSPNTVDVYN----PKTVQATMGGIARVKLHYTPLPDLIQSLKDI 174 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264 + + + + + + +++G EGKG+ + ++ ++ ++LN Sbjct: 175 PVYGTFLDGENMYTQKLSSNGLIVMGNEGKGIGKEVEQLINRKLYIPNYPAERETSESLN 234 Query: 265 VSNAAAVALYITQNH 279 V+ A AV + Sbjct: 235 VAIATAVVCAEFRRQ 249 >gi|256830493|ref|YP_003159221.1| TrmH family RNA methyltransferase [Desulfomicrobium baculatum DSM 4028] gi|256579669|gb|ACU90805.1| RNA methyltransferase, TrmH family, group 3 [Desulfomicrobium baculatum DSM 4028] Length = 251 Score = 95.7 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 89/235 (37%), Gaps = 8/235 (3%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G V L + + + +++A L V+ + D HQ Sbjct: 17 GRKPVLELLASRPHALDTVFLSEDATG-LGEVIGKCRELGVRFRKVRRPDLDRMFPGNHQ 75 Query: 113 GLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 G+ LD L++ LD V DP N+G + R+ +A G++ K Sbjct: 76 GVVARLRGRQLIELDRLITQVCQSPFPLILALDQVQDPGNVGTLARTLLALGGAGLLFPK 135 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + AK+A+GAL+ +P ++ NL A + + + L Q Sbjct: 136 DRTAFIGPAAAKAAAGALDSLPLCQVVNLARALDTCAEAGLAIYGSGTGPDSRNLFQARL 195 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 N L+LG E KG+RP + T M + M G +LNV+ A A+ + Sbjct: 196 NFPAVLVLGNEDKGMRPNVGKRCTEMLSIPMQGGFDSLNVAQAGAMIMTEMLRQR 250 >gi|94499455|ref|ZP_01305992.1| rRNA methyltransferase [Oceanobacter sp. RED65] gi|94428209|gb|EAT13182.1| rRNA methyltransferase [Oceanobacter sp. RED65] Length = 249 Score = 95.7 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 38/251 (15%), Positives = 93/251 (37%), Gaps = 10/251 (3%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSA---ALNNPSRKIFQLLATKNALARLDWDANLP 88 ++ +QK ++ ++ + G H + A + + + L+ A Sbjct: 5 DIKKLHQK-KYRNEYGCFLVEGEHLILELAKAAKHNPALQASTVYLSESYGELEQSALNG 63 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V + + K+ + +A+ +++ + L V DP N+G Sbjct: 64 LSLKQVRVTDKQMQKMADTKTPQGIVAVVPFNDERTQQAIASDNERTVYLYEVQDPGNLG 123 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ILR+ F + + + + +++ GA+ H+P + ++ D + + Sbjct: 124 TILRTLAWFGGFRCVLSPNSVDPYNPKVVRASMGAIFHVPIEQNISIDDMQNRFDEFACL 183 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHLHMPGIIKALNVSN 267 I S E +++ I G E +G+ + + T+ + G++++LN++ Sbjct: 184 DINGKPLSS-----EGFSEQRCFIFGNEARGVPHEELSKLKTTAYSIQGAGVVESLNLAT 238 Query: 268 AAAVALYITQN 278 A + Y Sbjct: 239 AVNMCAYELNR 249 >gi|254457129|ref|ZP_05070557.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD 1] gi|207085921|gb|EDZ63205.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD 1] Length = 259 Score = 95.7 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 84/234 (35%), Gaps = 5/234 (2%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + V+ L++ ++ +LATK N + V + I Sbjct: 27 EDNSFIADSPKVVNMLLDS-EIEVKSILATKEYYNEFSELINSKKIEKLFLVDKDEMQNI 85 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 VG + H + T P + +++LD + N+G+I RSA A D + Sbjct: 86 VGHKIHHNCMMHGTRPDETSLE---ALGDNILMLDAITSTENVGSIARSAAALGVDSYLL 142 Query: 165 TKRYSPSESAVLAKSASGALEH-IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 ++ + + G + +I + + L Q Sbjct: 143 PRQSPHPYGRRALRVSMGYVSKLKVHIYEDISQTIQELKKDGYRIYAAEVTPDATLLSQV 202 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K L++G EGKG+ + + + + M +K+ NVS AA++ +Y + Sbjct: 203 KSPQKWVLLMGHEGKGISQEVLDICDEVLSIEMAPGVKSFNVSVAASIMMYQLK 256 >gi|149185879|ref|ZP_01864194.1| rRNA methylase [Erythrobacter sp. SD-21] gi|148830440|gb|EDL48876.1| rRNA methylase [Erythrobacter sp. SD-21] Length = 268 Score = 95.7 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 84/244 (34%), Gaps = 5/244 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--- 82 ++ K +++ +K +H + G+ ++ A +LA + L Sbjct: 12 SNPTVKALRALREK-KHRKRERKFLAEGLRLLTDARECGHVPETLVLADRRDPHPLLSAL 70 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 ++ V P + KI GK+ + S + + +V + Sbjct: 71 EESVEASGGEVIETTPDILAKITGKDNPQAVAGVFAEFDTSLAALDRSCADIWLVAQALR 130 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G +LR+ A G+I + S +++ GA+ + + + Sbjct: 131 DPGNLGTMLRTGDAIGAGGLILIDDCADPFSVEAVRASMGAVFTQGIAQAEWS-EFESWL 189 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + Q + S +P +++G E +GL + + M G + Sbjct: 190 RAGEGQLVAASLRDAQPYRGAPYAAPCFVMVGNESRGLPEDYEMACDLRVTMPMKGRADS 249 Query: 263 LNVS 266 LN + Sbjct: 250 LNAA 253 >gi|84385230|ref|ZP_00988262.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01] gi|84379827|gb|EAP96678.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01] Length = 244 Score = 95.7 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 84/249 (33%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N + + AT + L + Sbjct: 8 KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LFNSDLVVKNVFATADF---LSENHASLFE 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K + + A + PT + + L++ LD V+DP N+G I Sbjct: 63 FDCVEASLDDLTKASTLVSNNA----AIAVVEIPTFELPEATGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + I+ + + + + G+ + + Q + Sbjct: 119 IRVADWYGIKHIVASSDCADPYNPKTISATMGSFGRVHVSQTDLPAYLEQANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K L++G+E G+R + T + G ++LNV+ A Sbjct: 179 EGESVHK-----TEFTANGILLMGSESHGIREHAAKYVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNMRRQ 242 >gi|119713240|gb|ABL97306.1| putative tRNA/rRNA methyltransferase [uncultured marine bacterium HF10_12C08] Length = 228 Score = 95.7 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 117/222 (52%), Gaps = 6/222 (2%) Query: 63 NPSRKIFQLLATKNALARLDWDANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 N +R +++ T A +L + L + ID ++ + HQG+ + + Sbjct: 2 NKNRVKYEVYFTSEAERKLRSEVKLESYNIITIRKTREEIDLVLKGISNHQGICIRVEKI 61 Query: 122 LSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 P L + + + ++ +LD ++DP N+GAI RSA+AF DGII T S +E++ L Sbjct: 62 QPPHLTEFIKNLNKETSIIFLLDQLDDPQNVGAIFRSALAFDIDGIILTDHNSVAENSFL 121 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 AK+AS A++ IP+ +I N++ ++ + G+ GL +++ + +KI ILG+E Sbjct: 122 AKTASSAIDKIPFTKIKNISSCIKILKDQGYWIYGLDMEAQSSITDIAFPNKIVFILGSE 181 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 KG+R T + M +++LNVSNAAA+ ++ N Sbjct: 182 SKGMRRVTSSLCDENLKIKMSDNLESLNVSNAAAIMMFYISN 223 >gi|298736242|ref|YP_003728768.1| TrmH family RNA methyltransferase [Helicobacter pylori B8] gi|298355432|emb|CBI66304.1| RNA methyltransferase, TrmH family [Helicobacter pylori B8] Length = 227 Score = 95.7 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 90/224 (40%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG H ++ LN+ K+ ++ +K + + L P + + K Sbjct: 4 VVYGKHVITHLLNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + + T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223 >gi|227546236|ref|ZP_03976285.1| TrmH family rRNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312133084|ref|YP_004000423.1| spou2 [Bifidobacterium longum subsp. longum BBMN68] gi|317481810|ref|ZP_07940838.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA] gi|322688754|ref|YP_004208488.1| rRNA methylase [Bifidobacterium longum subsp. infantis 157F] gi|322690746|ref|YP_004220316.1| rRNA methylase [Bifidobacterium longum subsp. longum JCM 1217] gi|227213217|gb|EEI81089.1| TrmH family rRNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517171|emb|CBK70787.1| rRNA methylases [Bifidobacterium longum subsp. longum F8] gi|311774079|gb|ADQ03567.1| SpoU2 [Bifidobacterium longum subsp. longum BBMN68] gi|316916747|gb|EFV38141.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA] gi|320455602|dbj|BAJ66224.1| putative rRNA methylase [Bifidobacterium longum subsp. longum JCM 1217] gi|320460090|dbj|BAJ70710.1| putative rRNA methylase [Bifidobacterium longum subsp. infantis 157F] Length = 292 Score = 95.7 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 40/272 (14%), Positives = 85/272 (31%), Gaps = 24/272 (8%) Query: 26 NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++ +++ +++ + + G +V A+ + L + Sbjct: 9 DNPKSDRVRRIADLTRAKGRERSGRFLIEGPQSVREAVTWRPDVVQDLYVEVSQALEHPR 68 Query: 84 DAN--LPHPFP--------VKTVPPQTIDKIVGKEAVHQGLALETAPL---LSPTLDAVR 130 + L V + +I + + L Sbjct: 69 IISSTLEKIVETSQDATIYVHYCTGDVMRRISPDAQGIAAVGNAESMHAGADDVELGKNG 128 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-- 188 + + V DP N G ++R+A A CD +I + + +S +G+L H+P Sbjct: 129 RAPQIAAFWQVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVL 188 Query: 189 -YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------KIALILGAEGKGLR 241 T + + + K + D A++ G E +GL Sbjct: 189 AMSTDEFFTWTGDHNMDVWAADVYGTEERKPESLPAVLADKAAVEAPKAVLFGNEARGLE 248 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 P + + + G ++LN+ +AAV L Sbjct: 249 PDILTRCGRIVSIPLYGKAESLNLGTSAAVML 280 >gi|23465637|ref|NP_696240.1| rRNA methylase [Bifidobacterium longum NCC2705] gi|23326310|gb|AAN24876.1| possible rRNA methylase [Bifidobacterium longum NCC2705] Length = 294 Score = 95.7 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 40/272 (14%), Positives = 85/272 (31%), Gaps = 24/272 (8%) Query: 26 NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++ +++ +++ + + G +V A+ + L + Sbjct: 11 DNPKSDRVRRIADLTRAKGRERSGRFLIEGPQSVREAVTWRPDVVQDLYVEVSQALEHPR 70 Query: 84 DAN--LPHPFP--------VKTVPPQTIDKIVGKEAVHQGLALETAPL---LSPTLDAVR 130 + L V + +I + + L Sbjct: 71 IISSTLEKIVETSQDATIYVHYCTGDVMRRISPDAQGIAAVGNAESMHAGADDVELGKNG 130 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-- 188 + + V DP N G ++R+A A CD +I + + +S +G+L H+P Sbjct: 131 RAPQIAAFWQVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVL 190 Query: 189 -YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------KIALILGAEGKGLR 241 T + + + K + D A++ G E +GL Sbjct: 191 AMSTDEFFTWTGDHNMDVWAADVYGTEERKPESLPAVLADKAAVEAPKAVLFGNEARGLE 250 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 P + + + G ++LN+ +AAV L Sbjct: 251 PDILTRCGRIVSIPLYGKAESLNLGTSAAVML 282 >gi|310287628|ref|YP_003938886.1| rRNA methyltransferase [Bifidobacterium bifidum S17] gi|309251564|gb|ADO53312.1| rRNA methyltransferase [Bifidobacterium bifidum S17] Length = 289 Score = 95.3 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 89/264 (33%), Gaps = 20/264 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----------NAL 78 +K+ + R + + G +V A+ + L Sbjct: 15 RVRKVADLANR-RTRERFGRFLIEGPQSVREAVTWMPDAVRDLYVQAVDGPDGPRIAGET 73 Query: 79 ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + + H V + +I + A + + + Sbjct: 74 LTSIVERSQEHRIYVHPASEAVMRRISPDCQGIAAVGDADAVRATAQGTQLPEKPFVAAF 133 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI---SNL 195 V DP N G ++R+A A CD ++ + + ++ +G+L HIP + + Sbjct: 134 WQVRDPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPVMTMGVDEFF 193 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI------ALILGAEGKGLRPKTQETAT 249 A +K+ + + + E+ D+ A+I G E +GL P Sbjct: 194 GWAGEKVLRTVAADVYGTDGREPRELPEVLRDQDLSGVGKAVIFGNEARGLEPGLLGRCD 253 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + + + G ++LN++ +AA+ L Sbjct: 254 DIVRIPLYGKAESLNLATSAAIML 277 >gi|328473290|gb|EGF44138.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus 10329] Length = 244 Score = 95.3 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 90/249 (36%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L + S + Q+ AT + L + + Sbjct: 8 KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LASSSLVVKQIFATADFLESHRQELS---G 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K + + A + P + + L++ LD V+DP N+G I Sbjct: 63 FECVEASLDDLTKASTLVSNNA----AIAVVEIPNVKEPQAKGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II + + + + G+ + + + + + Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQVSLVDLPSYLAEANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K + + L++G+E G+R + + T + G ++LNV+ A Sbjct: 179 EGESVHK-----TDFSAEGILLMGSESHGVREEASKFVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNMRRQ 242 >gi|195354200|ref|XP_002043587.1| GM17520 [Drosophila sechellia] gi|194127755|gb|EDW49798.1| GM17520 [Drosophila sechellia] Length = 407 Score = 95.3 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 86/263 (32%), Gaps = 28/263 (10%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKI 104 + + G + AL + L + K+ LA + D A L + VP + Sbjct: 139 QIIVEGRRLIQEALQCGLKMEVLLFSQKDQLALVKEDVGVAQLETGTKIYKVPQHDLKTW 198 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLL--------MVLDHVNDPHNIGAILRSAVA 156 +A+ P + Q L +V D++ +P+N+G+I+R+ A Sbjct: 199 SSLVTPPGLMAIFDRPSDKGLEKNLAEQQRLGSQPLPITVVCDNIREPNNLGSIIRTCAA 258 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT-----------DALQKMHSW 205 C ++ T + + G +P D + Sbjct: 259 LPCSQVVVTHGCCDPWESKALRGGCGGQFRVPIRDDVTWEELALTIPPEAADDCHVFIAE 318 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT------SMAHLHMPGI 259 Q ++ + + + LI+G E G+ + ++ + Sbjct: 319 SNQRKRENNQTIDYADIQGLGAHNLLIIGGESHGVSEEAYRFLNLVGGKGKCIYIPLAAG 378 Query: 260 IKALNVSNAAAVALYITQNHFAK 282 I +LNV++A + L+ + + Sbjct: 379 IDSLNVASALTLLLFELRRKLNQ 401 >gi|220903872|ref|YP_002479184.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868171|gb|ACL48506.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 250 Score = 95.3 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 60/152 (39%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L +VL +++DPHN+ AI RS AF + +P + SAS Sbjct: 73 HRQPDLTLVLANIHDPHNVSAIYRSCDAFGVSRVNLYYTNTPFPALGRKTSASARKWVES 132 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + S + +PL A+I+G E G+ P+ + A Sbjct: 133 ARHKDSAALMESLRGQNMQVLATSCSPTARPLRDWDFTRPTAVIMGNEHSGVEPELLQMA 192 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ M G+I++ NVS AAA+ L Sbjct: 193 DGELYIPMYGMIQSFNVSVAAAIILSEAARQR 224 >gi|33601597|ref|NP_889157.1| putative RNA methyltransferase [Bordetella bronchiseptica RB50] gi|33576033|emb|CAE33113.1| putative RNA methyltransferase [Bordetella bronchiseptica RB50] Length = 257 Score = 95.3 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 82/258 (31%), Gaps = 8/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ K + + L GVH A L + + L A Sbjct: 6 SRDNPAVKALHKLAAGGGRRD--GRILLDGVHLCQAWLAHQGTPLQALFDV--ARLDHPE 61 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 L P + + G +V G + R + ++ D + D Sbjct: 62 IRALAGQVPPQHCLALDSRLLQGLASVESGQGVVFVARAPEPALPERIDENCVLFDRIQD 121 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G +LR+ A ++ + + S + +S GA + I D + Sbjct: 122 PGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHF---ALHIHEHLDLEAVLP 178 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKA 262 + + L A + G EG+G+ A H+ +++ Sbjct: 179 RLDVPLVATTLARSGSLYDTDLPACCAWVFGHEGQGVAEALLRAAALRVHIPHESAAVES 238 Query: 263 LNVSNAAAVALYITQNHF 280 LNV AAA+ L+ + Sbjct: 239 LNVGAAAAICLFEQRRQR 256 >gi|218676911|ref|YP_002395730.1| rRNA methylase [Vibrio splendidus LGP32] gi|218325179|emb|CAV27085.1| rRNA methylase [Vibrio splendidus LGP32] Length = 244 Score = 95.3 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 14/252 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + K +++ QK + + G V L N + + AT + L + Sbjct: 5 KQLKLLRALGQK-KQRKAHGLFLVQGEKNVLE-LFNSDLVVKNVFATADF---LSENHAS 59 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 F + K + + A + PT + + + L++ LD V+DP N+ Sbjct: 60 LFEFDCVEASLDDLTKASTLVSNNA----AIAVVEIPTFELPKATGLMIALDGVSDPGNL 115 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R A + I+ + + + + G+ + + Q Sbjct: 116 GTIIRVADWYGIKHIVASSDCADPYNPKTISATMGSFGRVHVSQTDLPEYLEQANLPVYG 175 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + S K L++G+E G+R + T + G ++LNV+ Sbjct: 176 AFLEGESVHK-----TEFTANGILLMGSESHGIREHAAKFVTDKITIPAFGGAESLNVAM 230 Query: 268 AAAVALYITQNH 279 A + L + Sbjct: 231 ATGIILDNMRRQ 242 >gi|313140417|ref|ZP_07802610.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171] gi|313132927|gb|EFR50544.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171] Length = 289 Score = 95.3 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 88/264 (33%), Gaps = 20/264 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-------- 80 +K+ + R + + G +V A+ + L Sbjct: 15 RVRKVADLANR-RTRERFGRFLIEGPQSVREAVTWMPDAVRDLYVQAADGPDGPRIAGET 73 Query: 81 --LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + + H V + +I + A + + + Sbjct: 74 LTSIVERSQEHRIYVHPASEAVMRRISPDCQGIAAVGDADAVRATAQGTQLPEKPFVAAF 133 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI---SNL 195 V DP N G ++R+A A CD ++ + + ++ +G+L HIP + + Sbjct: 134 WQVRDPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPVMTMGVDEFF 193 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI------ALILGAEGKGLRPKTQETAT 249 A +K+ + + + E D+ A+I G E +GL P Sbjct: 194 GWAGEKVLRTVAADVYGTDGREPRELPEALRDQDLSGVGKAVIFGNEARGLEPGLLGRCD 253 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + + + G ++LN++ +AA+ L Sbjct: 254 DIVRIPLYGKAESLNLATSAAIML 277 >gi|291515298|emb|CBK64508.1| rRNA methylases [Alistipes shahii WAL 8301] Length = 251 Score = 95.3 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 33/256 (12%), Positives = 82/256 (32%), Gaps = 19/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 D + +++ K R ++ G + L + ++ + + Sbjct: 4 ADIQLVRALADK-RGRTEHGLFVAEGEKLIGE-LRASHLSVRRIFSLEGVF--------- 52 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + V+TV P+ ++++ + +L + LD V +P N+ Sbjct: 53 -NGPEVETVAPRDMERLS-QLKTPSNSLALVEIPRCDLKPERLRGRLTLALDDVQNPGNL 110 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R A F I+ ++ + + + ++ GA+ + + Sbjct: 111 GTIIRLADWFGITDIVCSEASADCFNPKVVQATMGAILRVRVHYTDLAALLSKAAALGLP 170 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKAL 263 + + +++G EG+G+ T T + ++L Sbjct: 171 VCGTFLE--GANIYETELKPAGIVVMGNEGRGITDAVARTVTQKLFIPPWPADRRGSESL 228 Query: 264 NVSNAAAVALYITQNH 279 NV+ A + + Sbjct: 229 NVAMATGIVCGEFRRQ 244 >gi|224283268|ref|ZP_03646590.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171] Length = 279 Score = 95.3 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 88/264 (33%), Gaps = 20/264 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-------- 80 +K+ + R + + G +V A+ + L Sbjct: 5 RVRKVADLANR-RTRERFGRFLIEGPQSVREAVTWMPDAVRDLYVQAADGPDGPRIAGET 63 Query: 81 --LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + + H V + +I + A + + + Sbjct: 64 LTSIVERSQEHRIYVHPASEAVMRRISPDCQGIAAVGDADAVRATAQGTQLPEKPFVAAF 123 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI---SNL 195 V DP N G ++R+A A CD ++ + + ++ +G+L HIP + + Sbjct: 124 WQVRDPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPVMTMGVDEFF 183 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI------ALILGAEGKGLRPKTQETAT 249 A +K+ + + + E D+ A+I G E +GL P Sbjct: 184 GWAGEKVLRTVAADVYGTDGREPRELPEALRDQDLSGVGKAVIFGNEARGLEPGLLGRCD 243 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + + + G ++LN++ +AA+ L Sbjct: 244 DIVRIPLYGKAESLNLATSAAIML 267 >gi|32490927|ref|NP_871181.1| hypothetical protein WGLp178 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166133|dbj|BAC24324.1| yjfH [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 250 Score = 95.3 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 106/245 (43%), Gaps = 10/245 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 N +YG+H + + N S KI +L K+ + + +K V + ++KI Sbjct: 2 NEIIYGIHVIEEFIKNKSNKILCILFLKSRKDIKFKKLILISNEKNIKIKFVDKKFLNKI 61 Query: 105 VGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + +A + + + ++LD + DP N+G+ +RSA F Sbjct: 62 TNNKKHQGIVAYIKNSKILKEPFLLKMLENKKNYFFLILDGIMDPRNLGSCIRSAYIFGV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +I K S S+ + K ASG+L+ IP I ++NL + + + Q IG S ++ Sbjct: 122 QAVIIRKNRSAKISSAVKKVASGSLDLIPLIYVTNLVRTINLLKKYNIQIIGTSRKAQLD 181 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN- 278 + + IA+++G+E G+ +E ++ ++ LN+S A + ++ Sbjct: 182 ICNKKLKQSIAVVMGSENLGISRLVKENCDNILNIPTVKNNLPLNISVATGICIFEIIRK 241 Query: 279 -HFAK 282 + K Sbjct: 242 NYLNK 246 >gi|291618555|ref|YP_003521297.1| YfiF [Pantoea ananatis LMG 20103] gi|291153585|gb|ADD78169.1| YfiF [Pantoea ananatis LMG 20103] gi|327394935|dbj|BAK12357.1| tRNA/rRNA methyltransferase YfiF [Pantoea ananatis AJ13355] Length = 377 Score = 95.3 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 97/263 (36%), Gaps = 10/263 (3%) Query: 24 RRNHRDY--KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81 + + K + Q R + +YG + A + I + ++ R Sbjct: 116 KPENPGISGKGVVDVEQIRRQRLEETR--VYGENACQALFQSRPECIVRAWFVQSVTPRF 173 Query: 82 DWDAN--LPHPFPVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 + V I K G V + ++ L+ + ++ Sbjct: 174 RDALRWLAANRKAYHVVDDAEITKASGTEHHGGVCFLIKKRMGMDVAEWLNKAESKDCVL 233 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 L+ V++PHN+GAI+RS F G++ S ES ++A G EH+ I + Sbjct: 234 ALEDVSNPHNLGAIMRSCAHFGVKGLLV-NDASLLESGAAVRTAEGGAEHVQAISGATFN 292 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + L+ G+ + SS L + K+ L+LG E +GL T + + Sbjct: 293 EGLEAFRKAGYTIVTTSSHQGTSLSDAVLPAKMVLVLGQEREGLSDSTFQQGDMSLSIGG 352 Query: 257 PGIIKALNVSNAAAVALYITQNH 279 G +++LNVS A V L Sbjct: 353 TGNVESLNVSVATGVLLAEWWRQ 375 >gi|153838665|ref|ZP_01991332.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ3810] gi|149747943|gb|EDM58809.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ3810] Length = 244 Score = 95.3 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 90/249 (36%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L + S + Q+ AT + L + + Sbjct: 8 KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LASSSLVVKQIFATADFLESHRQELS---G 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K + + A + P + + L++ LD V+DP N+G I Sbjct: 63 FECVEASLDDLTKASTLVSNNA----AIAVVEIPNVKEPQAKGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II + + + + G+ + + + + + Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQVSLVDLPSYLAEANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K + + L++G+E G+R + + T + G ++LNV+ A Sbjct: 179 EGESVHK-----TEFSAEGILLMGSESHGVREEASKFVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNMRRQ 242 >gi|237710454|ref|ZP_04540935.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229455176|gb|EEO60897.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 258 Score = 95.3 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 92/247 (37%), Gaps = 21/247 (8%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---PVKTVP 97 + + + G V L L+AT N + HP + V Sbjct: 24 KKRKEEQVFVAEGHKLVGDLL--GYFPCKLLIATSNW-------LKINHPVTANEIIEVT 74 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + + + ++ + LA+ P + +++S L + LD V DP N+G I+R A F Sbjct: 75 QEELSRASLQKTPQEVLAVFVQPSYDLNPEVIKSS-LCLALDDVQDPGNLGTIIRLADWF 133 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + I + + + ++ GAL + S Q + S + + S Sbjct: 134 GIEHIFCSAGTADVYNPKTVQATMGALARVKVHYCSLP----QLIESLADIPVYGTFLSG 189 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALNVSNAAAVAL 273 + E + +++G EGKG+ P+ ++ ++ ++LNV+ A AV Sbjct: 190 NIIYAESLSAHGLIVMGNEGKGVSPEVEKLINKKLYIPNYPQERETSESLNVAIATAVVC 249 Query: 274 YITQNHF 280 + Sbjct: 250 SEFRRRL 256 >gi|330685097|gb|EGG96763.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis VCU121] Length = 246 Score = 95.3 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 13/232 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + GVH + A + I QL + F + +++ Sbjct: 27 TGLALIEGVHLIEEAYQSG-LVIEQLFVVDPSRTDSSLIEYANETFEINLKVAESL---- 81 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 QG + ++ ++++D + DP N+G ++R+A A D I+ Sbjct: 82 SGTVTPQGFFAVIKKPDYD----ITTAKQVLLIDRIQDPGNLGTLIRTADAAGIDLIVME 137 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 K + + +++ G++ HIP I S + + + K+ QE Sbjct: 138 KGTADPYQDKVLRASQGSVFHIPVISESLQSYINTFNGPVYGTALDNAVSFKEVEAQETF 197 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ALILG EG+G+ P E T + + G ++LNV+ A ++ LY + Sbjct: 198 ----ALILGNEGEGVDPALLEHTTQNITIPIYGQAESLNVAIAGSILLYQLK 245 >gi|256826939|ref|YP_003150898.1| rRNA methylase [Cryptobacterium curtum DSM 15641] gi|256583082|gb|ACU94216.1| rRNA methylase [Cryptobacterium curtum DSM 15641] Length = 303 Score = 95.3 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 54/253 (21%), Positives = 96/253 (37%), Gaps = 20/253 (7%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL------PHPFPVKTVP 97 + ++ AL+ + L + LA+ + PV V Sbjct: 50 RERGLFIAESDKVINRALDAGVH-LRSLFLEEKWLAKTRPVLDRLGHEHTAKAIPVFIVT 108 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + + G E LA+ +L ++N++ + +L+ + + NIGA RSA A Sbjct: 109 HEQFRAVTGYEVTRGALAVFERLVLPRPEALLKNARRVAILEDIVNYTNIGAAFRSAAAL 168 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 S D ++ T A+ + G + +P+ RI + L Sbjct: 169 SIDAVLLTPSCHDPLYRRAARVSMGTVFQVPWTRIGAKAHSGSTGDWVESGIDLLHRFGF 228 Query: 218 K-------------PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 K + +++AL+LG EG GL +T+ MA + M I +LN Sbjct: 229 KTVALALDDDALPLNDARFAACERLALVLGTEGDGLAEQTRMLCDWMARIPMAPGIDSLN 288 Query: 265 VSNAAAVALYITQ 277 V+ A+AVA + T+ Sbjct: 289 VAAASAVAFWETR 301 >gi|34396174|gb|AAP55640.1| rRNA methylase [Spiroplasma citri] gi|110004355|emb|CAK98693.1| putative rrna methyl transferase protein [Spiroplasma citri] Length = 262 Score = 95.3 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 96/241 (39%), Gaps = 10/241 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + + G + + AL + + ++L TK +L + + V + Sbjct: 25 YRKEFNLALIEGWNIIDEALQHN--LVVEILTTKINQRKLKNF----NNILLTIVSESIL 78 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 K+ + Q + + + +Q +++L+++ DP N+G ++R+ + F Sbjct: 79 TKLS-QSKNSQNIIGVIDLTKVKEQNNFQFNQNILLLENIQDPGNVGTLIRTGLGFGFTN 137 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT---IGLSSDSKK 218 II + + +++ GA+ + + + +++ + T S + Sbjct: 138 IILYNHTVDLFNDKVLRASQGAIFKVAIKEANLIEIKNFQLNRYKIITTGLKRQSVFLQD 197 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 Q +N++ L LG EG GL QE + + + +++LNV+ A + +Y Sbjct: 198 CHCQFKQNERYILALGNEGHGLSTTLQEISDYNVQIKINSQLESLNVAQAGTILMYEINR 257 Query: 279 H 279 Sbjct: 258 Q 258 >gi|13472492|ref|NP_104059.1| hypothetical protein mlr2808 [Mesorhizobium loti MAFF303099] gi|14023238|dbj|BAB49845.1| mlr2808 [Mesorhizobium loti MAFF303099] Length = 265 Score = 95.3 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 95/236 (40%), Gaps = 5/236 (2%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-HPFPVKTVPPQTIDK 103 + G + L++ +L +N L L+ + PV V +D Sbjct: 28 RQGRFVAEGKVVLDLLLSSGRFGAESVLVLENRLGGLEDILHKAPADLPVYVVTSAVMDA 87 Query: 104 IVGKEAVHQGLALETAPLLSPT---LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 I G LA+ LDA+ + L++VL + + N+G+I R+A AF D Sbjct: 88 IAGFHMHRGILAIGRKATPQAPGPLLDALPDQALVLVLVGIANHDNMGSIFRNAAAFGAD 147 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ + + GA IP+ ++ + + GF+ + LS + + Sbjct: 148 AVLMDTTCCDPLYRKAIRVSVGAALKIPFASFTDTSGFTAMLAERGFEQLALSPRGRTDI 207 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +++AL LG EG+GL + + M +LNV+ A+A+AL+ Sbjct: 208 RDAKPAERLALYLGTEGEGLPERLLARL-QTVRITMSKGFDSLNVAAASAIALHHF 262 >gi|118138229|pdb|2I6D|A Chain A, The Structure Of A Putative Rna Methyltransferase Of The Trmh Family From Porphyromonas Gingivalis Length = 257 Score = 95.3 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 90/258 (34%), Gaps = 17/258 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S ++ ++ + + + G V L P + L+ T L + P Sbjct: 9 QIKFLRSLRER-KYRLREQAFAVEGPKLVGEXL--PFYRCRXLVGTAAXLR----AVSTP 61 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 H V +P + + A P L ++LD V DP N+G Sbjct: 62 HDAEVVELPES---FDFKRISTQTTPQPLXAVFDLPAEPEPVVEGLTLLLDGVQDPGNVG 118 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWG 206 ILR+A F + + S + +++ GAL + + N D + Sbjct: 119 TILRTADWFGIRHVWLGTGSADVFSPKVVQASXGALARVQPTPLKNTVDTLAYFRRQGIP 178 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-----GIIK 261 L S + L+LG+EG+G+ P+ T + G + Sbjct: 179 VYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTE 238 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV+ A A+ + Sbjct: 239 SLNVAIATAILCSEWRRR 256 >gi|268678807|ref|YP_003303238.1| RNA methyltransferase, TrmH family, group 3 [Sulfurospirillum deleyianum DSM 6946] gi|268616838|gb|ACZ11203.1| RNA methyltransferase, TrmH family, group 3 [Sulfurospirillum deleyianum DSM 6946] Length = 227 Score = 95.3 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 60/225 (26%), Positives = 95/225 (42%), Gaps = 6/225 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP-PQTIDKIVGKE 108 +YG L + +I + K +L K + + + Sbjct: 2 IIYGKQLFLHLLKHYPSRIKTVFLPKKCDTKLFSHIA---NVTQKICNIDERKAQALCHG 58 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG E PL A++ L++LD V D NIGAI+RSA AF DG+I + Sbjct: 59 GNHQGFIAEIEPLELTPFSAIKQGSFLVILDEVTDVGNIGAIVRSAYAFGADGLILSGMK 118 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + + A+L S++ A I + T + T+ + +++ K Sbjct: 119 TCNLEAILRTSSAAAF--ELPIALVPSTKDMLNELKQIGFTLYGADMDGVDVQKVTFAPK 176 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ALI+G+EGKGL PK +E ++ + M +LNVS AAA+ Sbjct: 177 RALIMGSEGKGLSPKVKERLDTVVSIKMARAFDSLNVSAAAAILC 221 >gi|186701914|ref|ZP_02971563.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186700651|gb|EDU18933.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 239 Score = 95.3 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 95/233 (40%), Gaps = 10/233 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 +G + A+ N L +KN + + + V + Sbjct: 5 FGKKALLDAIGNKQSISKVYLLSKNY---ELINLINKNKITYEIVNEAWFKQFDHSLNHQ 61 Query: 112 QGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 T L + + L+++LD + DP N GAI+R+A F D II Sbjct: 62 NIAFKLVKKNFQKTSLESFLKLIKDKKNALVLILDEIEDPRNFGAIIRTANGFGVDAIIY 121 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 K + S + ++ K++ GA+ +I I ++NL++ ++ + GF S + E+ Sbjct: 122 KKHHQASINDLVIKTSMGAINYIYMIEVNNLSNTIKNLQDEGFWVYATSLLKSQSYEKVD 181 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +K I+G E KG+ P + A + M G +++LNV A + L + Sbjct: 182 YANKTVFIVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIILAHYR 234 >gi|94495845|ref|ZP_01302424.1| rRNA methylase [Sphingomonas sp. SKA58] gi|94424537|gb|EAT09559.1| rRNA methylase [Sphingomonas sp. SKA58] Length = 249 Score = 95.3 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 88/240 (36%), Positives = 137/240 (57%), Gaps = 11/240 (4%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 M+ ++ ++ YG H V+AAL NP+R + ++ T+ AL LD LP P Sbjct: 1 MKKTHRSAKPKGAFPRF--YGRHAVTAALANPNRTVRKIWGTREALGALD----LPPVLP 54 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNI 147 + + ++V +A HQG+ E PL L + + + ++VLD V DPHN+ Sbjct: 55 IVYSDVADMGRMVPSDAPHQGIVAEVEPLDDVWLGDVLEEGQDDKRPILVLDQVTDPHNV 114 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAILRSA AF I+T R++P ES VLA++ASGALE +P++R+ NL AL ++ G+ Sbjct: 115 GAILRSAAAFDALCIVTQDRHAPPESGVLARAASGALEIVPWVRVVNLARALDEIAEAGY 174 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 IGL ++ + + I ++AL+LGAEG+GLR + +A L + +++LNVSN Sbjct: 175 WRIGLDGEADTTIGEAIGQSRVALVLGAEGEGLRHNSIAHCDIIAKLPISPRMESLNVSN 234 >gi|296271712|ref|YP_003654343.1| RNA methyltransferase [Arcobacter nitrofigilis DSM 7299] gi|296095887|gb|ADG91837.1| RNA methyltransferase, TrmH family, group 3 [Arcobacter nitrofigilis DSM 7299] Length = 230 Score = 95.3 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 81/230 (35%), Gaps = 2/230 (0%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG V L N I +++ +K L + + L + + + + Sbjct: 2 IIYGKQIVLYVLENHPSIIEEVMFSKE-LDKKIFSKFLKLGKKIIRLDNKKAQSLAKGGN 60 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD-GIITTKRY 168 ++ ++ + ++VLD + D NIGAI R+A A D + + Sbjct: 61 HQGFFLKLKEEFDYTPINEMKQNNFIVVLDGLTDVGNIGAITRTAYALGVDGIVAAGVKS 120 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + S + S K + ++ K K+DK Sbjct: 121 LNESGVIRTSSGAMLDMPFSLYPNSLDLANELKQSGFALIGATMNGTDLKKYGTITKDDK 180 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +AL LG+EG+GL K + M +LNVS AA + +Y Sbjct: 181 VALFLGSEGEGLSNKIIGKLDLKVSIGMENNFDSLNVSVAAGILIYNLMK 230 >gi|293394750|ref|ZP_06639041.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291422701|gb|EFE95939.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 362 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 89/244 (36%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V + Sbjct: 118 RRQRAEETRVYGENACQALFASRPDAIVRAWFVQSVTPRFREALRWMAANRKAYHVVDEE 177 Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ L + ++ L+ V +PHN+GAI+RS Sbjct: 178 ELAKASGTE-HHGGVCFLIKKRQGLDAQTYLQSAPAKDCVLALEEVGNPHNLGAIVRSCA 236 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F +G++ + + ES ++A G EHI I + L G+ + SS Sbjct: 237 HFGVNGVLL-QDPALLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSSH 295 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L Q K+ L+LG E GL + + G +++LNVS A + L Sbjct: 296 KGTTLAQAKLPAKMVLVLGQERDGLSDSAWQQGDMSISIGGTGKVESLNVSVATGILLAD 355 Query: 276 TQNH 279 Sbjct: 356 WWRQ 359 >gi|294628391|ref|ZP_06706951.1| TrmH family RNA methyltransferase [Streptomyces sp. e14] gi|292831724|gb|EFF90073.1| TrmH family RNA methyltransferase [Streptomyces sp. e14] Length = 272 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 94/239 (39%), Gaps = 5/239 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + R G + AL+ LL+ K D Sbjct: 17 DYTDLTDVELRRRREPAEGLFIAEGEKVIRRALDAGYTARSMLLSAK--WVEPLRDVIDG 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV P +++ G LA L D +R ++ + V++ VND NIG Sbjct: 75 LTAPVYVAAPDIAEQVTGYHVHRGALAAMQRKPLPAAADVLRTARRVAVMESVNDHTNIG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI RSA A D ++ + + K + GA+ +PY R+ L+ + + GF Sbjct: 135 AIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDRWPGDLEPVRAAGFT 194 Query: 209 TIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ + E + D++AL+LGAEG GL + A + M I +LN Sbjct: 195 LLALTPHERAKPLDEVAPHRMDRVALLLGAEGTGLSQRALSAADEWVRIPMSHGIDSLN 253 >gi|283781122|ref|YP_003371877.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] gi|283439575|gb|ADB18017.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] Length = 278 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 74/282 (26%), Positives = 112/282 (39%), Gaps = 32/282 (11%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I S D A +R ++ Q S + G V + + S + L Sbjct: 6 ITSFDDPLVAPYHEMNR-----RNLAQHS------GLFIVEGDKLVDRLITS-SFAMHSL 53 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--- 128 LA + R P P+ V T+ +G H+G+ PT++ Sbjct: 54 LAEPDMAERYATQV--PAEVPIYVVDRATLQATIGF-NFHRGILGCGYRREQPTVEQLLT 110 Query: 129 -------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 L++VL V DP N+G+ILRSA AF C G++ R + + Sbjct: 111 TPPTVAQVTAGRAADIGNLILVLAEVQDPTNLGSILRSAAAFGCRGVVLGPRCADPFARR 170 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQ-TIGLSSDSKKPLEQEIKNDKIALILG 234 + + + G+ IP SNL L+ + G+Q T + SD K L + AL+LG Sbjct: 171 VIRVSMGSALTIPITVSSNLACDLESIAEKGYQLTATVLSDRAKKLGDLQLDVPRALLLG 230 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +EG GL P+ + M +LNV+ AAAV LY Sbjct: 231 SEGNGLAPEWIAMCREHVTIPMAWGTDSLNVAIAAAVLLYHF 272 >gi|321472938|gb|EFX83907.1| hypothetical protein DAPPUDRAFT_315299 [Daphnia pulex] Length = 250 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +L+G H+V AAL N R+ QLL T++AL ++ K +P +++++ Sbjct: 17 LFWLWGTHSVIAALENTQRECHQLLCTRDALKDVEPFLAKRPKLSPKILPRDELNRLL-P 75 Query: 108 EAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + VHQG+AL+ +PL L+ ++ L++LD + DP N+GAILRSA AF DG++ Sbjct: 76 QTVHQGVALQVSPLPELFLNTFLARSPAAKRLVILDQITDPQNVGAILRSACAFGFDGVL 135 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 T+R+SP V+ KSASGALE IP + +N+ L+ + + GF GLS + PL Q Sbjct: 136 MTERHSPPLEGVVGKSASGALEKIPLLMTANVAQGLRLLKTEGFWCWGLSEEGTLPLSQL 195 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 +AL+LGAEGKGLRP T + + L LN Sbjct: 196 PCEGSLALVLGAEGKGLRPLTAQLCDGLVRLPTSPDFPTLN 236 >gi|308184337|ref|YP_003928470.1| RNA methyltransferase [Helicobacter pylori SJM180] gi|308060257|gb|ADO02153.1| RNA methyltransferase [Helicobacter pylori SJM180] Length = 227 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG V LN+ K+ ++ +K +L + L P + + + Sbjct: 4 VIYGKQVVMHILNSHKEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLARGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLAKVELPLATSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + + T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|261366641|ref|ZP_05979524.1| RNA methyltransferase, TrmH family, group 3 [Subdoligranulum variabile DSM 15176] gi|282571463|gb|EFB76998.1| RNA methyltransferase, TrmH family, group 3 [Subdoligranulum variabile DSM 15176] Length = 260 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 58/250 (23%), Positives = 103/250 (41%), Gaps = 15/250 (6%) Query: 45 QPENLFLYGVHTVSAALNNPSRK--IFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 Q + ++G + V+ L + ++ + A+A VK VP + Sbjct: 11 QHTDTLVWGKNPVTELLKSGETVDTVYLADSLPQAVAGYYTALAKQSGAVVKRVPGNKLQ 70 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 K+ G HQG+A A + +L+ + L++ D V DPHN+GAI+RSA Sbjct: 71 KLCGTP-DHQGVAARAAEVQYASLEDLFAAASAKNEAPFLVLCDGVEDPHNLGAIIRSAY 129 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 G++ KR + + K+++GA +P R++NL A++ + Sbjct: 130 LCGAHGVVIPKRGGVGVTGTVMKASAGAAARLPVARVTNLAQAIRTIKEHNVFVYCADLG 189 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALNVSNAAAV 271 + + +AL+LG+EG G T++ + L M + + NVS AA + Sbjct: 190 GAPLS-RTDLSGPVALVLGSEGGGPGALTRKLCDAAVTLEMAPGQATGVDSYNVSVAAGI 248 Query: 272 ALYITQNHFA 281 Y Sbjct: 249 LCYDVLRRRT 258 >gi|239622239|ref|ZP_04665270.1| putative rRNA methyltransferase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514236|gb|EEQ54103.1| putative rRNA methyltransferase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 292 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 41/272 (15%), Positives = 86/272 (31%), Gaps = 24/272 (8%) Query: 26 NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++ +++ +++ + + G +V A+ + L + Sbjct: 9 DNPKSDRVRRIADLTRAKGRERSGRFLIEGPQSVREAVTWRPDVVQDLYVEVSQALEHPR 68 Query: 84 DAN--LPHPFP--------VKTVPPQTIDKIVGKEAVHQGLALETAPL---LSPTLDAVR 130 + L V + +I + + L Sbjct: 69 IISSTLEKIVETSQDATIYVHYCTGDVMRRISPDAQGIAAVGNAESMHAGADDVELGKNG 128 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-- 188 + + V DP N G ++R+A A CD +I + + +S +G+L H+P Sbjct: 129 RAPQIAAFWQVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVL 188 Query: 189 -YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL------ILGAEGKGLR 241 T + + + K + DK A+ + G E +GL Sbjct: 189 AMSTDEFFTWTGDHNMDVWAADVYGTEERKPESLPAVLADKAAVEAPKTVLFGNEARGLE 248 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 P + + + G ++LN+ +AAV L Sbjct: 249 PDILTRCGRIVSIPLYGKAESLNLGTSAAVML 280 >gi|242281274|ref|YP_002993403.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio salexigens DSM 2638] gi|242124168|gb|ACS81864.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio salexigens DSM 2638] Length = 251 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 58/251 (23%), Positives = 94/251 (37%), Gaps = 12/251 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTV 96 + T + +N + G V L + +I L K + + K Sbjct: 2 KKQTREDDNTIIAGRKPVQELLLDSPERIDLLYLQKGRQDKNFERTIQRCKKYGIKYKIA 61 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAI 150 + ++ HQG+ A L D + LL+VLD V DP N+G + Sbjct: 62 DKAELGRVFS--GNHQGVIARVAALPFADFDDMLENLADSPLPLLVVLDQVQDPGNVGVL 119 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 RS A GI+T K K+++GAL +P R++N++ AL K G Sbjct: 120 ARSLYALGGAGIVTAKHGGAFLGPAAVKASAGALNKLPVARVNNISQALDKAIDMGINIY 179 Query: 211 GLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G D + L+LG E KG+R ++ + H+ +LNV+ A Sbjct: 180 GAGLDDDSSSAYTAEIHTPAILVLGNEEKGIRFNVEKRCQKLIHIPFRRDFDSLNVAQAG 239 Query: 270 AVALYITQNHF 280 A+ + Sbjct: 240 AMLISEFARRL 250 >gi|127514429|ref|YP_001095626.1| tRNA guanosine-2'-O-methyltransferase [Shewanella loihica PV-4] gi|126639724|gb|ABO25367.1| tRNA guanosine-2'-O-methyltransferase [Shewanella loihica PV-4] Length = 234 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 1/154 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R + L + LD V+ +NI A++R+A A I ++ Sbjct: 15 NRQTDLTVCLDKVHKTNNIAAVIRTADAVGIHQI-HAVWPDIEMRVSGNTASGSQQWVKT 73 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 A Q + S++ +I+G E G+ + A Sbjct: 74 IKHYHMDEAAAQFKAAGMQILATNFSENAVDFRDIDYTKPTVVIMGNERDGVSEEGLAIA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G++++LNVS A+A+ +Y Q A+ Sbjct: 134 DQQIIIPMIGMVQSLNVSVASALVMYEAQRQRAE 167 >gi|228470153|ref|ZP_04055062.1| RNA methyltransferase, TrmH family [Porphyromonas uenonis 60-3] gi|228308291|gb|EEK17146.1| RNA methyltransferase, TrmH family [Porphyromonas uenonis 60-3] Length = 262 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 91/254 (35%), Gaps = 9/254 (3%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 H + K ++S +++ Q G + L P+ + L+ T + L Sbjct: 14 HAEVKLIKSLQL-AKYRRQSNLFIAEGEKLIGEML--PAYRCQLLVGTAELVEPLLERCP 70 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 V P+ I+++ G ++ L + Q ++LD V DP N Sbjct: 71 ASIAEAVTLPDPKQIERVSGLKSPRPLL---ALCEIPTIEAPQALLQPTLLLDDVQDPGN 127 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSW 205 +G +LR+ ++ T+ + S + ++ GAL + R ++ T L + Sbjct: 128 VGTLLRTCDWMGIRQVLCTEGCADIYSPKVLQATMGALARVQVYRYTDRTALLTMLKKTE 187 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKAL 263 + L+LG EG G+ P+ + + P ++L Sbjct: 188 IPVIGTFIDGVPLRTLRLASEQPYILVLGNEGNGISPELSALVSQRITIPSPVDSHCESL 247 Query: 264 NVSNAAAVALYITQ 277 NV+ A A+ + Sbjct: 248 NVAVAGAIVMAHLM 261 >gi|54020641|ref|YP_116168.1| hypothetical protein mhp660 [Mycoplasma hyopneumoniae 232] gi|53987814|gb|AAV28015.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232] Length = 233 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 97/234 (41%), Gaps = 8/234 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++ G ++++ A+ N L VK V +DK+V Sbjct: 4 YICGRNSLADAIKNGFIFKEIYLLRPTNDQIFLKQ-------KVKIVSRDFLDKLVSLNH 56 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 LE +++++LDH+ D +N+G I+R+A F II K+ + Sbjct: 57 QGFVGVLENFKFFEIDTLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILPKKRA 116 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228 + K +SG + +I ++++ A+ K+ F + + +++ N Sbjct: 117 AKLNETTMKVSSGGFVGLKFILVNSIVSAINKLKEMDFWIYATDLKEKSRKIQEIQFNYP 176 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A+ILG EG G++ + + + + G + +LNV+ A + L+ + + K Sbjct: 177 CAIILGNEGTGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQNIKK 230 >gi|91794292|ref|YP_563943.1| tRNA guanosine-2'-O-methyltransferase [Shewanella denitrificans OS217] gi|91716294|gb|ABE56220.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella denitrificans OS217] Length = 233 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L + LD V+ +NI A++RSA I ++ Sbjct: 15 NRQIDLTVCLDKVHKTNNIAAVIRSADCVGIHQI-HAVWPDIDMRVSGNTASGSQQWVKT 73 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 SD+ A+++G E G P+ A Sbjct: 74 IKHYRFEEAEQAFNAQNMQILTTTFSDTAVDYRDIDYTKPTAIVMGNERDGTSPEAIAAA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G++++LNVS AAA+ +Y Q Sbjct: 134 SQHILIPMIGMVQSLNVSVAAALVMYEAQRQR 165 >gi|17986712|ref|NP_539346.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|23502453|ref|NP_698580.1| RNA methyltransferase [Brucella suis 1330] gi|161619530|ref|YP_001593417.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365] gi|163843839|ref|YP_001628243.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445] gi|225628025|ref|ZP_03786061.1| 23S ribosomal RNA methyltransferase [Brucella ceti str. Cudo] gi|225853064|ref|YP_002733297.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457] gi|254689771|ref|ZP_05153025.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 6 str. 870] gi|254694260|ref|ZP_05156088.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 3 str. Tulya] gi|254702308|ref|ZP_05164136.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 5 str. 513] gi|254704836|ref|ZP_05166664.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 3 str. 686] gi|254710622|ref|ZP_05172433.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis B2/94] gi|254714806|ref|ZP_05176617.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M644/93/1] gi|254717866|ref|ZP_05179677.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M13/05/1] gi|256032115|ref|ZP_05445729.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis M292/94/1] gi|256045207|ref|ZP_05448106.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 1 str. Rev.1] gi|256061637|ref|ZP_05451776.1| tRNA/rRNA methyltransferase SpoU [Brucella neotomae 5K33] gi|256114159|ref|ZP_05454913.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 3 str. Ether] gi|256160311|ref|ZP_05458005.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M490/95/1] gi|256258023|ref|ZP_05463559.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 9 str. C68] gi|256263453|ref|ZP_05465985.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|260169250|ref|ZP_05756061.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. F5/99] gi|260755304|ref|ZP_05867652.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260884319|ref|ZP_05895933.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|261214568|ref|ZP_05928849.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|261219713|ref|ZP_05933994.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1] gi|261318195|ref|ZP_05957392.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94] gi|261322602|ref|ZP_05961799.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1] gi|261325647|ref|ZP_05964844.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33] gi|261752875|ref|ZP_05996584.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261755532|ref|ZP_05999241.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686] gi|265989226|ref|ZP_06101783.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|265991641|ref|ZP_06104198.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|265995478|ref|ZP_06108035.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|265998688|ref|ZP_06111245.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1] gi|297248855|ref|ZP_06932573.1| RNA methyltransferase [Brucella abortus bv. 5 str. B3196] gi|17982336|gb|AAL51610.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|23348443|gb|AAN30495.1| RNA methyltransferase, TrmH family [Brucella suis 1330] gi|161336341|gb|ABX62646.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365] gi|163674562|gb|ABY38673.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445] gi|225617188|gb|EEH14234.1| 23S ribosomal RNA methyltransferase [Brucella ceti str. Cudo] gi|225641429|gb|ACO01343.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457] gi|260675412|gb|EEX62233.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260873847|gb|EEX80916.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|260916175|gb|EEX83036.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|260924802|gb|EEX91370.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1] gi|261295292|gb|EEX98788.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1] gi|261297418|gb|EEY00915.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94] gi|261301627|gb|EEY05124.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33] gi|261742628|gb|EEY30554.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261745285|gb|EEY33211.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686] gi|262553312|gb|EEZ09146.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1] gi|262766591|gb|EEZ12380.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263002425|gb|EEZ15000.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|263093460|gb|EEZ17510.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|264661423|gb|EEZ31684.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|297176024|gb|EFH35371.1| RNA methyltransferase [Brucella abortus bv. 5 str. B3196] gi|326409607|gb|ADZ66672.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M28] gi|326539310|gb|ADZ87525.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M5-90] Length = 276 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 65/280 (23%), Positives = 118/280 (42%), Gaps = 18/280 (6%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + +F + D+ +L +RD ++ ++ R G V Sbjct: 1 MQDIDTRSHDCVFVIDDADDIRLAP-YRDIREKDLVGRQQR-------FIAEG-KVVLNV 51 Query: 61 L--NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L ++ + LL +N L L LP PV +VP +D + G VH+G+ Sbjct: 52 LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110 Query: 118 TAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 P L + L++VL +++ N+G+I R+A AF D ++ + Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + + GA +PY + D + GF + L+ + + + + ++ AL+L Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 G EG+GL + E A + M +LNV+ A+ +AL Sbjct: 231 GTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 269 >gi|238022623|ref|ZP_04603049.1| hypothetical protein GCWU000324_02532 [Kingella oralis ATCC 51147] gi|237866063|gb|EEP67197.1| hypothetical protein GCWU000324_02532 [Kingella oralis ATCC 51147] Length = 178 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 1/146 (0%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VLD V D N+G +LRSA A ++ + + S + ++ GA + Sbjct: 31 CIVLDAVQDAGNVGTVLRSAAAAGIRHVVLGAGCADAYSPKVLRAGMGAHF-ALTLHERV 89 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + L+ + L + A I G EG G+ P A + + Sbjct: 90 NLRDWLAGYPHRTLATALTEHNNFSLYELDLRPPSAWIFGNEGSGVSPDILAAADATVKI 149 Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280 M G +++LN++ AA + L+ Sbjct: 150 PMQGAVESLNIAQAATICLFEQMRQR 175 >gi|303233310|ref|ZP_07319981.1| RNA methyltransferase, TrmH family [Atopobium vaginae PB189-T1-4] gi|302480610|gb|EFL43699.1| RNA methyltransferase, TrmH family [Atopobium vaginae PB189-T1-4] Length = 281 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 96/265 (36%), Gaps = 19/265 (7%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL----DWDA 85 Y ++ + +SR L L + AL + +L + L + Sbjct: 17 YTQLTAHQLQSRGNPSSAKLILESQFVIKTALERGY-PLESILVCREHFDTLMSTLEPFT 75 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD--AVRNSQLLMVLDHVND 143 P+ T+P + + +VG +VH+G T+ + ++ L+ VL+ ++D Sbjct: 76 AAISELPIYTLPKEEMSTLVGF-SVHRGYFACMPRPSRRTVASLNLNSASLICVLETISD 134 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA----------KSASGALEHIPYIRIS 193 NIGA+ RSA AF DGII + + A A Sbjct: 135 VSNIGALFRSAAAFGVDGIILNASCADPYNRRSVRTSMGAVLSLPWAQAASATSHTWAAD 194 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + ++ S ++ + + K AL G+EG GL + + Sbjct: 195 TACVLSSHGFVNIACALDDNAMSLNAVQMQSFSKK-ALWFGSEGWGLSQEARAACDMSVM 253 Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278 + M I +LNV+ ++AV + Sbjct: 254 IPMQRGIDSLNVAASSAVFFWECAR 278 >gi|158313567|ref|YP_001506075.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec] gi|158108972|gb|ABW11169.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec] Length = 310 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 94/240 (39%), Gaps = 10/240 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + G V+AAL + + +L ++A R PV+ V + Sbjct: 61 EGLFLVEGAQAVTAALAVGA--LVELFVGESAAERHADLLAAA-DLPVRLVTDAAAAALS 117 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 + A L L + +L+ V + NDP N G ++RSA A D ++ T Sbjct: 118 ETVTPQ--GLVGVAELPRHELADLGRPRLVAVCEGANDPGNAGTVIRSADAAGADAVVFT 175 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-- 223 ++++G+L H+P + + + + G + S + + L+ Sbjct: 176 GNSVDPFGGKCVRASAGSLFHLPVVVAEDGPAVVGALRRAGCLVLAASGHAARDLDDLAG 235 Query: 224 --IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HF 280 A + G E +GL P T +A + + + G ++LN++ A+A+ LY + Sbjct: 236 VGTLAGPTAWVFGNEARGLTPATAASADAAVRVPVYGQAESLNLAVASALCLYASARAQR 295 >gi|28897728|ref|NP_797333.1| RNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|260363841|ref|ZP_05776596.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus K5030] gi|260876899|ref|ZP_05889254.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AN-5034] gi|260897959|ref|ZP_05906455.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus Peru-466] gi|260902161|ref|ZP_05910556.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ4037] gi|28805941|dbj|BAC59217.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD 2210633] gi|308085459|gb|EFO35154.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus Peru-466] gi|308093903|gb|EFO43598.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AN-5034] gi|308108291|gb|EFO45831.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ4037] gi|308113897|gb|EFO51437.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus K5030] Length = 244 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 90/249 (36%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L + S + Q+ AT + L + + Sbjct: 8 KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LASSSLVVKQVFATADFLESHRQELS---G 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K + + A + P + + L++ LD V+DP N+G I Sbjct: 63 FECVEASLDDLTKASTLVSNNA----AIAVVEIPNVKEPQAKGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II + + + + G+ + + + + + Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQVSLVDLPSYLAEANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K + + L++G+E G+R + + T + G ++LNV+ A Sbjct: 179 EGESVHK-----TDFSAEGILLMGSESHGVREEASKFVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNMRRQ 242 >gi|260494497|ref|ZP_05814627.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33] gi|260197659|gb|EEW95176.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33] Length = 258 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 89/277 (32%), Gaps = 27/277 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K+++ I SLK K + G Sbjct: 3 MEIIESKENKLIKSLKKLKQKK-------------------YRDSENKFLAEGYK----F 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+ ++ + ++ V + +++ +E Sbjct: 40 LDYNYSPEIIIIREDIYQSNFYFEKLNKFSCKKIVVTTKIFEELSSQENSQGV----IIL 95 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D S L++LD V+DP N+G I+R A + II TK + + + ++ Sbjct: 96 YNKKNNDLKSLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRAT 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ ++ + + + P + +K A++ G EG G+ Sbjct: 156 MGSILNVNLYYLEKSEIINFLKENNYSIISTYLDKTAIPYNKIELKEKNAIVFGNEGNGI 215 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + ++LNV+ A + LY + Sbjct: 216 SSDFINITDYKTIIPILSNTESLNVAVATGIILYKFR 252 >gi|224539871|ref|ZP_03680410.1| hypothetical protein BACCELL_04781 [Bacteroides cellulosilyticus DSM 14838] gi|224518520|gb|EEF87625.1| hypothetical protein BACCELL_04781 [Bacteroides cellulosilyticus DSM 14838] Length = 253 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 80/255 (31%), Gaps = 16/255 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S K ++ + G V L L AT L++ Sbjct: 7 RIKYIHSLELK-KNRKTEKVFLAEGPKLVGDLL--GHFPCRFLAATPEWLSQHPKLPVE- 62 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V V + + + Q + T +V + L + LD V DP N+G Sbjct: 63 ---DVSEVSDEDLSR-ASLLKTPQQVLAVFEQPEYETDASVISHSLCLALDDVQDPGNLG 118 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I + + A + T + S Sbjct: 119 TIIRLADWFGIEHIFCSPNTVDVYN----PKTVQATMGGIARVKLHYTPLPDLIQSLKDI 174 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264 + + + + + + +++G EG G+ + ++ ++ ++LN Sbjct: 175 PVYGTFLDGENMYTQKLSSNGLIVMGNEGNGIGKEVEQLINRKLYIPNYPAERETSESLN 234 Query: 265 VSNAAAVALYITQNH 279 V+ A AV + Sbjct: 235 VAIATAVVCAEFRRQ 249 >gi|329939002|ref|ZP_08288376.1| rRNA methylase [Streptomyces griseoaurantiacus M045] gi|329301887|gb|EGG45780.1| rRNA methylase [Streptomyces griseoaurantiacus M045] Length = 272 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 63/256 (24%), Positives = 103/256 (40%), Gaps = 9/256 (3%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I +++D +L DY + + R G + A L Sbjct: 4 IVTVEDPEDPRL----HDYTDLTDVELRRRREPAEGLFIAEGEKVIRRAGEAGYAMRSML 59 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131 L+ K D L PV V P+ +++ G LA L D +R Sbjct: 60 LSAKWVEPMRDVIDALT--VPVYVVDPELAERVTGYHVHRGALASMRRKPLPAAADLLRG 117 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++ ++V++ VND NIGAI RSA A D ++ + + K + GA+ +PY R Sbjct: 118 ARRVVVMEAVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYAR 177 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETA 248 + +L + GF + L+ D+ E + D++AL+LGAEG GL + A Sbjct: 178 LEQWPGSLAAVTEAGFDLLALTPDAGARSLDEAAPHRRDRVALMLGAEGDGLSRRALAAA 237 Query: 249 TSMAHLHMPGIIKALN 264 + M + +LN Sbjct: 238 DEPVRIPMSHGVDSLN 253 >gi|237744635|ref|ZP_04575116.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1] gi|229431864|gb|EEO42076.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1] Length = 258 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 90/277 (32%), Gaps = 27/277 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K+++ I SLK K + G Sbjct: 3 MEIIESKENKLIKSLKKLKQKK-------------------YRDSENKFLAEGYK----F 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+ ++ + ++ V + +++ +E Sbjct: 40 LDYNYSPEIIIIREDIYQSNFYFEKLNKISCKKIVVTTKIFEELSSQENSQGV----IIL 95 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D S L++LD V+DP N+G I+R A + II TKR + + + ++ Sbjct: 96 YNKKNNDLKSLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKRTVDAYNEKVIRAT 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ ++ + + + P + +K A++ G EG G+ Sbjct: 156 MGSILNVNLYYLEKSKIINFLKENNYSIISTYLDKTAIPYNKIELKEKNAIVFGNEGNGI 215 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + ++LNV+ A + LY + Sbjct: 216 SSDFINITDYKTIIPILSNTESLNVAVATGIILYKFR 252 >gi|213692751|ref|YP_002323337.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524212|gb|ACJ52959.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458909|dbj|BAJ69530.1| putative rRNA methylase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 292 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 40/272 (14%), Positives = 85/272 (31%), Gaps = 24/272 (8%) Query: 26 NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++ +++ +++ + + G +V A+ + L + Sbjct: 9 DNPKSDRVRHIADLTRTKGRERSGRFLIEGPQSVREAVTWRPDVVRDLYVEVSQALEHPR 68 Query: 84 DA--NLPHPFP--------VKTVPPQTIDKIVGKEAVHQGLALETAPL---LSPTLDAVR 130 L V + +I + + L Sbjct: 69 IISSALEKIVETSQDATIYVHYCTGDVMHRISPDAQGIAAVGNAESMHAGADDVELGKNG 128 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-- 188 + + V V DP N G ++R+A A CD ++ + + +S +G+L H+P Sbjct: 129 RAPQIAVFWQVRDPGNAGTVIRAADAAGCDAVLFVDDCVDVLNPKVIRSTAGSLFHLPVL 188 Query: 189 -YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------KIALILGAEGKGLR 241 T + + + K + D A++ G E +GL Sbjct: 189 AMSTDEFFTWTGDHNLDVWAADVYGTEERKPESLPAVLADKAAVEAPKAVLFGNEARGLE 248 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 P + + + G ++LN+ +AAV L Sbjct: 249 PDILTRCGRIVSIPLYGKAESLNLGTSAAVML 280 >gi|317010773|gb|ADU84520.1| RNA methyltransferase [Helicobacter pylori SouthAfrica7] Length = 227 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + LN+ K+ ++ +K + + L P + + K Sbjct: 4 VVYGKQVIMHILNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLAKVELPLAISLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + ++ T L ++ +++ K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGANMQGSNPREDLALKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSIKMRRNFDSLNVSVAAGILM 223 >gi|307294636|ref|ZP_07574478.1| RNA methyltransferase, TrmH family, group 3 [Sphingobium chlorophenolicum L-1] gi|306879110|gb|EFN10328.1| RNA methyltransferase, TrmH family, group 3 [Sphingobium chlorophenolicum L-1] Length = 246 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 131/221 (59%), Gaps = 9/221 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 YG H V AAL NP R + ++ T++AL LD LP P+ + ++V +A H Sbjct: 18 YGRHAVIAALANPDRVVRKIWGTRDALNALD----LPPVLPIVYSDVADLGRMVPSDAPH 73 Query: 112 QGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 QG+ E PL L + + ++VLD V DPHN+GAILRSA AF I+T Sbjct: 74 QGIVAEVEPLDDVWLGNVLEAGQDDKRPVLVLDQVTDPHNVGAILRSAAAFDALCIVTQD 133 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R++P ES VLA+SASGALE +P++R+ NL AL ++ G+ IGL ++++ L + I Sbjct: 134 RHAPPESGVLARSASGALEIVPWVRVVNLARALDEIAEAGYWRIGLDGEAEQTLGEAIGT 193 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 ++AL+LGAEG+GLR + +A L + +++LNVSN Sbjct: 194 SRVALVLGAEGEGLRHNSMAHCDILAKLPISPRMESLNVSN 234 >gi|288799931|ref|ZP_06405390.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299 str. F0039] gi|288333179|gb|EFC71658.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299 str. F0039] Length = 256 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 96/268 (35%), Gaps = 18/268 (6%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 ++ + + L +N K ++S K ++ Q G ++ L K + +T Sbjct: 1 MQYNTHKMLGKN--KIKFIRSLELK-KNRQQERLFVAEGPKVIADLLT--KIKAHTIFST 55 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134 + L + + + KI + Q L PT +A +QL Sbjct: 56 SSKLKEFSSKQAD----NIIEITDSELSKISFLQHPQQVL---AVFPFFPTTEATPQNQL 108 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ LD V DP N+G I+R A F I+ ++ + + +++ G++ + Sbjct: 109 ILALDGVQDPGNLGTIIRIADWFGIKNIVCSEDTVDVYNPKVIQASMGSVAQVSVNYCDL 168 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L ++ + K +++G EGKG+ ++ T + Sbjct: 169 KNFIENIAPKVPVYGTCLDGENIYNQT---LSSKGIIVMGNEGKGVSTAIKQLFTHKLLI 225 Query: 255 HMP---GIIKALNVSNAAAVALYITQNH 279 I +LNV+ A A+ + Sbjct: 226 PNYHPQSAIDSLNVAIATAITCAEFKRQ 253 >gi|238789531|ref|ZP_04633315.1| tRNA guanosine-2'-O-methyltransferase [Yersinia frederiksenii ATCC 33641] gi|238722284|gb|EEQ13940.1| tRNA guanosine-2'-O-methyltransferase [Yersinia frederiksenii ATCC 33641] Length = 230 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + L+ V+ PHN+ AI+R+A A + + L+ +A Sbjct: 10 CEMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQV-HAIWPTTQMYTRLSSAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 SD+ + +++G E G+ + Sbjct: 69 SWVQVKTHSHIADAITHLKSQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGISQE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|300725268|ref|YP_003714597.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297631814|emb|CBJ92535.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] Length = 235 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 60/157 (38%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A+R L + L+ V+ PHN+ A++R+A A I S L+ +A Sbjct: 10 CQMMAMRQPDLTICLEEVHKPHNVSAVIRTADAIGIHQI-HAIWPDQSLRTQLSSAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + Q SD Q +I+G E KG+ + Sbjct: 69 SWVQVQTHSTIQQAIEQFKSDGMQVLATHLSDKAVDFRQIDYTKPTCIIMGQEKKGISKQ 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 129 AVALADHDIIIPMAGMVQSLNVSVASALILYEAQRQR 165 >gi|269217371|ref|ZP_06161225.1| SpoU rRNA methylase family protein [Slackia exigua ATCC 700122] gi|269129508|gb|EEZ60593.1| SpoU rRNA methylase family protein [Slackia exigua ATCC 700122] Length = 332 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 90/293 (30%), Gaps = 47/293 (16%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP-- 90 + +++ + + + AL+ + L+ + A A + Sbjct: 40 LTEVQLRNKLEPEKGVFIAESIKVIDRALDAGMVPVSVLMTPEWLDAAAPTVARIQKASK 99 Query: 91 --------------------------------FPVKTVPPQTIDKIVGKEAVHQGLALET 118 PV P + + ++ G L Sbjct: 100 PAPTLRGGVSGGGVSARAASCGGDDAEGSSACTPVFVAPVEELKRLTGFALTRGILCAMR 159 Query: 119 APLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 P LS + ++ + +L+ + D N+GAI RSA A D ++ Sbjct: 160 RPKLSSVEELLAGVHPGGARRIAMLEGIVDHTNVGAIFRSAAALGVDAVLVAPTCCDPLY 219 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ--------TIGLSSDSKKPLEQEIK 225 + + G + +P+ RI N + + Sbjct: 220 RRSVRVSMGTVFQVPWTRIGNDAHDWPRAGLEELHRLGYATAAMALSDDSIPLDDARLAA 279 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +++AL+ G EG GL +T E + M + +LNV+ A+AVA + Sbjct: 280 CERLALVFGTEGDGLTARTIEGCDYTVRIPMAHHVDSLNVAAASAVAFWELCR 332 >gi|308188674|ref|YP_003932805.1| RNA methylase [Pantoea vagans C9-1] gi|308059184|gb|ADO11356.1| putative RNA methylase [Pantoea vagans C9-1] Length = 232 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ A++R+A A + S + SA Sbjct: 16 RQHDLTVCMEQVHKPHNVSAVIRTADAVGIHEV-HAVWPSQRMRTQASASAGSNSWVKVV 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + Q SD + +++G E G+ + A Sbjct: 75 THPTIGDAVKQLKQQKMQVLATHLSDDAVDFREIDYTLPTCILMGQEKTGITEEALALAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A A+ LY Q Sbjct: 135 RKIVIPMVGMVQSLNVSVACALILYEAQRQR 165 >gi|293605074|ref|ZP_06687466.1| TrmH family RNA methyltransferase [Achromobacter piechaudii ATCC 43553] gi|292816477|gb|EFF75566.1| TrmH family RNA methyltransferase [Achromobacter piechaudii ATCC 43553] Length = 262 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 92/282 (32%), Gaps = 30/282 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS R++ K + + P + L GVH A Sbjct: 1 MKHISS------------------RDNPAVKALAKLAGTAGKRGSP--VLLDGVHLCQAW 40 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L + + + + + + + E+ L T Sbjct: 41 LQHHGVPDQAIFDVERLSQPDIAALAAAVPDAHCLALDSRLMQSLASVESGQGVAFLVTP 100 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 P + N L D + DP N+G +LR+ A + + + SA + +S Sbjct: 101 PSPEMPAEVDENCVLF---DRIQDPGNVGTLLRTCAAAGVKRVFLATGTAAAWSAKVLRS 157 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 GA + I D + + + D + L + + A + G EG+G Sbjct: 158 GQGAHF---ALAIHEHIDLTALLPRLRVPLVATALDGARNLYEGRLPARCAWVFGHEGQG 214 Query: 240 LRPKTQETATSMAHLH--MPGIIKALNVSNAAAVALYITQNH 279 + P + A+ + M +++LNV AAA+ L+ + Sbjct: 215 VDPVLLDAASHKVCIPHDMA-AVESLNVGAAAAICLFEQRRQ 255 >gi|293189810|ref|ZP_06608524.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus F0309] gi|292821225|gb|EFF80170.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus F0309] Length = 290 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 104/270 (38%), Gaps = 23/270 (8%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY +++ +S+ + + + A+ L ++ L L Sbjct: 18 DYTRLKDVKLRSKIEPERGLYMAESANVIERAIRAGHTP-RSFLMSRRWLPTLTNLIEAA 76 Query: 89 HP------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLL 135 P+ ++++ G +H+G + P+LD ++ + Sbjct: 77 TGGPDGADVPIFVADEDVLEQMTGFH-LHRGALAAMQRPVLPSLDELLATAHGGTPARRV 135 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL+++ D N+GA RSA A D ++ T + + + + G + IP+ R+ + Sbjct: 136 VVLENLVDHTNVGAAFRSATALGVDAVLVTPQCADPLYRRSVRVSMGTVFQIPWTRLDSW 195 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------IALILGAEGKGLRPKTQET 247 + + GF L+ + + +A+++G EG GL +T Sbjct: 196 PGDITALQEAGFTVASLALSDDSVSLDDFASLPALQGPGARLAMVMGTEGDGLGHRTIAA 255 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + M + +LNV+ A+AV + T+ Sbjct: 256 SDYTVKIPMDHGVDSLNVAAASAVVFWATR 285 >gi|209518723|ref|ZP_03267539.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. H160] gi|209500837|gb|EEA00877.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. H160] Length = 289 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 100/261 (38%), Gaps = 7/261 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 A R++ YK++++ + + + L G H S L+ + + T A Sbjct: 29 KAITSRDNPLYKRLKALAGSTHQQRRGGHALLEGFHLASTYLDVAGQPELCV-VTDGAQR 87 Query: 80 RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + A + + V P + + G+ L L +P + + + L++ Sbjct: 88 HDEAQAIVSRIDEHRLVTLPDALFGQLSNVVHGVGILLLVEKLDAPLPERIAENCLVL-- 145 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D V D N+G+ILRSA A + + + S+ + +S GA + Sbjct: 146 DGVQDAGNVGSILRSAAAAGIQHVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDVEA--- 202 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + + S + + + +A + G EG G+ ++ + + PG Sbjct: 203 DALIERLAVPIVITDSHGAEAIYDCDLSGPLAWVFGNEGAGVSQVWRDAVSLRVTIPQPG 262 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNV+ AAAV ++ Sbjct: 263 GMESLNVAAAAAVCVFEQCRQ 283 >gi|89889339|ref|ZP_01200850.1| RNA methyltransferase, SpoU family [Flavobacteria bacterium BBFL7] gi|89517612|gb|EAS20268.1| RNA methyltransferase, SpoU family [Flavobacteria bacterium BBFL7] Length = 242 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 91/257 (35%), Gaps = 23/257 (8%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++ ++K ++ + + G ++ L+ Q+L T+ Sbjct: 6 RLKLLKGLSRK-KNRDDHQLFLVEGYKSILE-LSQTDLVRQQVLVTEGHH--------AL 55 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P + + + I + LA+ PL + S L + LD V DP N+G Sbjct: 56 DSLPTDIISKKDMANISTLKTPPGYLAVFEMPLKRE----INLSGLTVALDDVKDPGNLG 111 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R F II + + +++ +L + ++ ++ Sbjct: 112 TIIRLCDWFDVKQIICSTETVDVFNPKCVQASMASLGRVQVDYVNL-----EEFLQDASS 166 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNV 265 I ++ + + + D L++G E G+ + + + G ++LNV Sbjct: 167 KIFTTAMNGVSIYETNLPDHGILVMGNESAGISEEIMKLGN-KISIPQYGSQPSTESLNV 225 Query: 266 SNAAAVALYITQNHFAK 282 + A AV L + K Sbjct: 226 AMATAVVLGEWRRSTEK 242 >gi|307700896|ref|ZP_07637921.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16] gi|307613891|gb|EFN93135.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16] Length = 307 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 97/265 (36%), Gaps = 16/265 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY ++ N + ++ + L R LL T + L L Sbjct: 44 DYTNLKDVNLRRSFEAEHGLFLAESNEVIMRVLRAGYRP-RSLLVTPHWLEILAPVLAST 102 Query: 89 H---------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 P PV ++++VG +A P L + S+ ++VL+ Sbjct: 103 SCTHGDPEGGPIPVFVATEAVLEQLVGFHLHRGAIASMERPALPDPAAILAQSRRVLVLE 162 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + D N+GA +RSA A + D I+ T + + + G + +P+ R+ DA Sbjct: 163 DLVDHTNVGAAVRSAAACNYDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPDAD 222 Query: 200 QKMHSWGF------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + + K+AL+ GAE GL+ T A + Sbjct: 223 LFHAAGFELAALALRDDAVDLRDYARKLAGDSTRKVALVAGAERDGLKRSTVAKADYVVR 282 Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278 + M + +LNV+ A AVA + T Sbjct: 283 IEMAHGVDSLNVAGACAVACWATAQ 307 >gi|306818845|ref|ZP_07452567.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239] gi|304648531|gb|EFM45834.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239] Length = 307 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 97/265 (36%), Gaps = 16/265 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY ++ N + ++ + L R LL T + L L Sbjct: 44 DYTNLKDVNLRRSFEAEHGLFLAESNEVIMRVLRAGYRP-RSLLVTPHWLEILAPVLAST 102 Query: 89 H---------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 P PV ++++VG +A P L + S+ ++VL+ Sbjct: 103 SCTHGDPEGGPIPVFVATEAVLEQLVGFHLHRGAIASMERPALPDPAAILAQSRRVLVLE 162 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + D N+GA +RSA A + D I+ T + + + G + +P+ R+ DA Sbjct: 163 DLVDHTNVGAAVRSAAACNYDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPDAD 222 Query: 200 QKMHSWGF------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + + K+AL+ GAE GL+ T A + Sbjct: 223 LFHAAGFELAALALRDDAVDLRDYARKLAGDSTRKVALVAGAERDGLKRSTVAKADYVVR 282 Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278 + M + +LNV+ A AVA + T Sbjct: 283 IEMAHGVDSLNVAGACAVACWATAQ 307 >gi|238784018|ref|ZP_04628034.1| tRNA guanosine-2'-O-methyltransferase [Yersinia bercovieri ATCC 43970] gi|238715126|gb|EEQ07122.1| tRNA guanosine-2'-O-methyltransferase [Yersinia bercovieri ATCC 43970] Length = 230 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + L+ V+ PHN+ AI+R+A A + + L+ +A Sbjct: 10 CEMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQV-HAIWPTTEMYTRLSSAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 SD + +++G E G+ + Sbjct: 69 SWVQVKTHPHITDAIAHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISEE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|254478160|ref|ZP_05091542.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM 12653] gi|214035889|gb|EEB76581.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM 12653] Length = 198 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 52/162 (32%), Gaps = 1/162 (0%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAK 178 + R ++ +D V + HN AILR+ A + E Sbjct: 1 MKRFYEVLQKRQKDFVVFVDDVTNEHNFSAILRTCDAVGVMRVYYFSEAKKGIEINEAVS 60 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 A+ I + K + +S K + L++G E K Sbjct: 61 MAANRWLFIERVYDREKAIKELKERENLQVVVTWLDESSKDFREIDYTKPTLLVVGNELK 120 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 G+ A + M G++++LNVS A + LY Sbjct: 121 GVSEDILNLADERIVIPMMGMVQSLNVSVATGIILYEALRQR 162 >gi|170026386|ref|YP_001722891.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis YPIII] gi|186893379|ref|YP_001870491.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|294502145|ref|YP_003566207.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis Z176003] gi|169752920|gb|ACA70438.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis YPIII] gi|186696405|gb|ACC87034.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis PB1/+] gi|262360224|gb|ACY56945.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis D106004] gi|262364170|gb|ACY60727.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis D182038] gi|294352604|gb|ADE62945.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis Z176003] Length = 219 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + L+ V+ PHN+ AI+R+A A + + L+ +A Sbjct: 5 RQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQV-HAIWPTTQMYTRLSAAAGSNSWVQVK 63 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 SD + +++G E G+ P+ A Sbjct: 64 THPHIADAIAYLKSQDMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISPEALALAD 123 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 124 QDIIIPMIGMVQSLNVSVASALILYEAQRQR 154 >gi|325300674|ref|YP_004260591.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM 18170] gi|324320227|gb|ADY38118.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM 18170] Length = 251 Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 88/255 (34%), Gaps = 14/255 (5%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S K ++ + + G V L + TK L R Sbjct: 6 KIKYIHSLELK-KNRKEEQAFLAEGYKLVEELL--GHFPCRIVAGTKAWLDRHPHLHAEE 62 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V + + +I ++ + LA+ P+ ++ L + LD V DP N+G Sbjct: 63 I----FEVSEEELTRISLQKNPQEVLAVFEQPVYEWNINT-AAHSLCLALDDVQDPGNVG 117 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I R A F + + ++ + + ++ GA+ + + + S Sbjct: 118 TIARIADWFGIEHVFCSQGTADIYNPKTVQATMGAIARVQFHYCNLPEFIRSA--SAQDI 175 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264 + + + K + E + +I+G EG G+ + T + ++LN Sbjct: 176 PLFGTFLNGKDIYGENLENHGIIIMGNEGNGISTPIAQCITHRLFIPNYPQGRSTSESLN 235 Query: 265 VSNAAAVALYITQNH 279 V+ A A+ + Sbjct: 236 VAIATAIVCAEFRRR 250 >gi|193214688|ref|YP_001995887.1| tRNA guanosine-2'-O-methyltransferase [Chloroherpeton thalassium ATCC 35110] gi|193088165|gb|ACF13440.1| tRNA guanosine-2'-O-methyltransferase [Chloroherpeton thalassium ATCC 35110] Length = 219 Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 1/157 (0%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L R L +V+++VN HN+ AI+R+ A + P ++ Sbjct: 15 LLDKRQPDLTVVMENVNKAHNLAAIIRTCDAVGIPKVHAVA-LRPEIRTKQNSASGANRW 73 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 I S + S AL++GAE +G+ Sbjct: 74 VDVQIHNSTEDVFSTLRQGGFQIFVAHFSPQATDFRAVDFTKPTALVVGAEWEGISETAI 133 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A ++ M G++++LNVS A A+ L+ Q + Sbjct: 134 SLADGSLYVPMVGMVESLNVSVATAIMLFEAQRQRTE 170 >gi|167629871|ref|YP_001680370.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum Ice1] gi|167592611|gb|ABZ84359.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum Ice1] Length = 272 Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 92/265 (34%), Gaps = 5/265 (1%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NA 77 ++R K+ +S ++K + + GV A + + L + Sbjct: 2 KITSPDNRHVKEARSLSRK-KERGVTGKYLIEGVRLAEEAAASSVSLAYCLYTERVAAQP 60 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137 R D V + + I E + + L++ Sbjct: 61 RGRRLLDRLAAAGVDCLEVDDRALATITETEQSQGIVLVANLAPAHWEAVIAAPEPFLLI 120 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 +D V DP N+G I+R+A A G++ T + + GAL +P + + Sbjct: 121 VDGVQDPGNLGTIIRTAEAAGVTGVLLTPGTVDPYGPKVIRGTMGALFRLPVATVPSAKG 180 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHM 256 + + P + + IA+++G+E G RP + A + + Sbjct: 181 LAASLRERDISLAVADARDGVPYFEAPWDRGSIAIVIGSEAHGPRPFWGDLAQLRVRIPL 240 Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281 +++LN + AAAV L+ H + Sbjct: 241 APPVESLNAAVAAAVLLFEAARHRS 265 >gi|86145741|ref|ZP_01064070.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222] gi|85836440|gb|EAQ54569.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222] Length = 244 Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 85/249 (34%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N + + AT + L + Sbjct: 8 KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LFNSDLVVKNVFATADF---LSENHASLFE 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K + + A + PT + + + L++ LD V+DP N+G I Sbjct: 63 FDCVEASLDDLTKASTLVSNNA----AIAVVEIPTFELPKATGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + I+ + + + + G+ + + Q + Sbjct: 119 IRVADWYGIKHIVASSDCADPYNPKTISATMGSFGRVHVSQTDLPEYLEQANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K L++G+E G+R + T + G ++LNV+ A Sbjct: 179 EGESVHK-----TEFTANGILLMGSESHGIREHAAKFVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNMRRQ 242 >gi|119472959|ref|ZP_01614815.1| tRNA (Guanosine-2'-O-)-methyltransferase [Alteromonadales bacterium TW-7] gi|119444628|gb|EAW25938.1| tRNA (Guanosine-2'-O-)-methyltransferase [Alteromonadales bacterium TW-7] Length = 228 Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 1/154 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIP 188 R + L + L+ V+ HN+ AI+RSA A C + + + + LE Sbjct: 16 RQTDLTVCLEDVHKHHNLSAIVRSADAVGCHHVHAVWPENQKWLTNNTSGGSKNWLETHL 75 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + I + +++ + S+ + A+I+G E G+ + + A Sbjct: 76 HKNIDDAATMMRQHNPNVQILATHLSEDAVDFREIDYTKPTAIIVGQEKTGISAQALKHA 135 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G++++LNVS AAA+ L+ Q+ K Sbjct: 136 DQNIIIPMQGMVQSLNVSVAAALILFEAQHQREK 169 >gi|15828649|ref|NP_326009.1| tRNA/rRNA methyltransferase [Mycoplasma pulmonis UAB CTIP] gi|14089591|emb|CAC13351.1| TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pulmonis] Length = 229 Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 104/223 (46%), Gaps = 9/223 (4%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G ++V AL N KI L + + ++ Q +D +V + HQ Sbjct: 8 GKNSVLDALENN-VKIEMLYVLASKVHEFKHI----KNIKIEVKDKQFLDSLVKE--NHQ 60 Query: 113 GLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 G L +LD + ++ + +++LDH+ DP+N GAILRSA AF II + + Sbjct: 61 GYVAVLKSLNFVSLDQMIKSKETILILDHLEDPYNFGAILRSANAFGIKNIIYPIKRAVD 120 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 ++ + K +SG ++ + + ++++ + K + + + + + N+ Sbjct: 121 INSTVLKVSSGGFVNLRFYKSNSISATIDKLKKQGYWIYSSSLDPTSEDINKISFNNPSV 180 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L++G E KG+ T++ + + ++ G +++LN S AA + Sbjct: 181 LVIGNEKKGISQTTKKQSDQLFYIKTKGSVQSLNASVAAGIIF 223 >gi|145222306|ref|YP_001132984.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK] gi|145214792|gb|ABP44196.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK] Length = 268 Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 54/253 (21%), Positives = 102/253 (40%), Gaps = 6/253 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 ++ + S +++ S + GV V L + LL T L L D + Sbjct: 15 FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFVP-RALLGTDRRLTELGTDLDGLA 73 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P + + + +G LA + + + ++ + VL+ VND N+G+ Sbjct: 74 -APFYRATAEVMAEAIGFHLNRGVLASASRAPELTVAEVLDGARTVAVLEGVNDHENLGS 132 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 + R+A D +I + + + G +P+ R +N L + F+ Sbjct: 133 VFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPFARAANWPADLNILRDNDFRL 192 Query: 210 IGLSSDSKKPLEQEI----KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + ++ D P + ++IA+++GAEG GL+ T +A + M +LNV Sbjct: 193 LAMTPDPTVPTLADAVSGLTEERIAILVGAEGPGLKEHTMRSADVRVRIPMARGTDSLNV 252 Query: 266 SNAAAVALYITQN 278 + AAA+A Y Sbjct: 253 ATAAALAFYERDR 265 >gi|71893988|ref|YP_279434.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J] gi|71852115|gb|AAZ44723.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J] Length = 233 Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 99/234 (42%), Gaps = 8/234 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++ G ++++ A+ N K + + VK V +DK+V Sbjct: 4 YICGRNSLADAIKNG-------FIFKEIYLLKPTNDQIFLKQKVKIVSRDFLDKLVRLNH 56 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 LE +++++LDH+ D +N+G I+R+A F II KR + Sbjct: 57 QGFVGVLENFKFFEIDTLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILPKRRA 116 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228 + K +SG + +I ++++ A+ K+ F + + +++ N Sbjct: 117 AKLNETTMKVSSGGFVGLKFILVNSIVSAINKLKEMDFWIYATDLKEKSRKIQEIQFNYP 176 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A+ILG EG G++ + + + + G + +LNV+ A + L+ + + K Sbjct: 177 CAIILGNEGTGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQNIKK 230 >gi|67923250|ref|ZP_00516736.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501] gi|67854927|gb|EAM50200.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501] Length = 155 Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 1/146 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL + P N G I R+ A + + + L ++ H+ NL Sbjct: 6 VVLVNPQIPPNTGNIARTCAATNTELHLVGPLGFELSDRYLKRAGLDYWPHVKLHYYENL 65 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + +G S K + + L+ G+E +GL K +E M ++ Sbjct: 66 EQFVSFQKQQEGRLLGFSVRGKSCYGECNFQENDWLVFGSETEGLPDKFREQCDQMLYIP 125 Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280 MP +++LN+S + A+ L+ Sbjct: 126 MPHPQVRSLNLSVSVAIGLFEALRQL 151 >gi|288918245|ref|ZP_06412600.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f] gi|288350415|gb|EFC84637.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f] Length = 320 Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 102/242 (42%), Gaps = 10/242 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + G V+AAL+ + + +L ++ALAR PV+ V + Sbjct: 70 EEGLFLVEGAQAVTAALHADA--LVELFIGESALARHAQ-LTAGTGVPVRFVTDAAAAAL 126 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + + L L + +L+ V + NDP N G ++RSA A D ++ Sbjct: 127 SETVTPQ--GLVGVSELPGHRLADLGRPRLVAVCEGANDPGNAGTVIRSADAAGADAVVF 184 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE- 223 +S++G+L H+P I ++ ++++ G Q + S + + L+ Sbjct: 185 VGDSVDPFGGKCVRSSAGSLFHLPVIVAADALAVVRELRELGCQVLATSGHADRDLDDLA 244 Query: 224 ---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-H 279 + A + G E +GL T +A + + + G ++LN++ A+A+ +Y + Sbjct: 245 AAGVLAGPTAWVFGNEARGLTAATAASADTAVRVPVYGQAESLNLAVASALCMYASARAQ 304 Query: 280 FA 281 A Sbjct: 305 RA 306 >gi|257463319|ref|ZP_05627716.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] gi|317060896|ref|ZP_07925381.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] gi|313686572|gb|EFS23407.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] Length = 224 Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 74/187 (39%), Gaps = 4/187 (2%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV + + +K+ V + P ++ + ++ L+VLD + DP N+G + Sbjct: 35 CPVFLLSRKCFEKVS----VQENSQGVILLYSYPVIEISKAAKQLIVLDDIQDPGNLGTM 90 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A I TK + + +S+ G++ H+ + + Sbjct: 91 IRLVDAAGFSDIFLTKHSVDCYNEKVVRSSMGSIFHVRLHVMEKKEILEYLQTENYHVLV 150 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + +K A + G EG G+ + E A + + G ++LNV+ AA Sbjct: 151 TTLQRDSVAYTEMQLKEKNAFVFGNEGHGVSKEFLELAEQKIIIPISGQAESLNVAMAAG 210 Query: 271 VALYITQ 277 + L+ ++ Sbjct: 211 IILFYSR 217 >gi|157373473|ref|YP_001472073.1| tRNA guanosine-2'-O-methyltransferase [Shewanella sediminis HAW-EB3] gi|157315847|gb|ABV34945.1| tRNA guanosine-2'-O-methyltransferase [Shewanella sediminis HAW-EB3] Length = 231 Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L + LD V+ +NI A++R+A A + ++ Sbjct: 15 NRQPDLTLCLDKVHKTNNIAAVIRTADAVGIHQV-HAIWPDLDMRVSGNTASGSQQWVKT 73 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 Q S+ + A+ILG E G+ P+ A Sbjct: 74 IRHDHMDEAQTQFRAQGMQILATNFSEDAVDFREIDYTRPTAIILGNERDGVSPEGIAAA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ +Y Q Sbjct: 134 DQHIIIPMIGMVQSLNVSVASALIMYEAQRQR 165 >gi|332654055|ref|ZP_08419799.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcaceae bacterium D16] gi|332517141|gb|EGJ46746.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcaceae bacterium D16] Length = 261 Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 103/236 (43%), Gaps = 10/236 (4%) Query: 34 QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPF 91 + ++S + + G + V AL KIF +A Sbjct: 4 RPPLRRSAPIEAESDGVIEGRNAVIEALRAGVTIDKIFIAKGETDATLGHIASTAREKGI 63 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144 V + +D + + HQG+ A T+D + L++V D ++DP Sbjct: 64 VVVDADRRKLDGMSRTHS-HQGVIALCAVREYVTVDDILAIAQEKGEKPLIVVCDELSDP 122 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+GA++R+A A G+I KR S +AV+AK+++GA+ H+P R+ NL AL+++ Sbjct: 123 HNLGAVIRTADAAGAHGVIIPKRRSAGLTAVVAKTSAGAVAHVPVARVPNLVAALKELQQ 182 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 G G +++ L Q A+++G+EG G+ E + M G I Sbjct: 183 AGVWVFGTAAEGTTSLYQADLKGPAAIVIGSEGDGMGRLVTENCDFTVSIPMFGKI 238 >gi|260174886|ref|ZP_05761298.1| putative tRNA/rRNA methyltransferase [Bacteroides sp. D2] gi|315923129|ref|ZP_07919369.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697004|gb|EFS33839.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 254 Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 83/263 (31%), Gaps = 18/263 (6%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 A L +N K + S K + + G V L L AT + L Sbjct: 2 ASLSKN--KIKYIHSLELK-KIRKEEGVFLAEGPKLVGDLL--GHFPCRFLAATSSWLQE 56 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 D + V Q + V + L + LD Sbjct: 57 H-PDIDASELVEVSQEDLSR----ASLLKTPQQVLAIFEQPSYTVNPEVVHQSLCLALDD 111 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R A F + II ++ + ++ G + + S Sbjct: 112 VQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHYTSLP----D 167 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI- 259 + S G I + K + ++ + +++G EG G+ + ++ Sbjct: 168 FIRSLGDTPIFGTFLDGKNMYEQPLSANGLIVMGNEGNGIGKEVATLINRKLYIPNYPEG 227 Query: 260 ---IKALNVSNAAAVALYITQNH 279 ++LNV+ A AV + Sbjct: 228 QETSESLNVAIATAVICAEFRRQ 250 >gi|254779454|ref|YP_003057559.1| 23S rRNA methyltransferase [Helicobacter pylori B38] gi|254001365|emb|CAX29350.1| 23S rRNA methyltransferase [Helicobacter pylori B38] Length = 227 Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 90/224 (40%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG ++ LN+ K+ ++ +K +L + L P + + K Sbjct: 4 VIYGKQVITHLLNSHKEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + + T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223 >gi|312868274|ref|ZP_07728474.1| RNA methyltransferase, TrmH family [Streptococcus parasanguinis F0405] gi|311096019|gb|EFQ54263.1| RNA methyltransferase, TrmH family [Streptococcus parasanguinis F0405] Length = 181 Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 78/183 (42%), Gaps = 3/183 (1%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + P+ + + + +A + + L+ V DP N+G ++R+A Sbjct: 1 MTPEILSLLADSKTPQGIVAEIALEQPELP---DQLQGRFLYLEDVQDPGNVGTMIRTAD 57 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 A DG++ +K + S +S G+ HIP ++ + S S+ Sbjct: 58 AAGFDGVMLSKASADLYSLKTLRSMQGSHFHIPIWKLDREELLERATQSHLAVLATTLSE 117 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + Q + D+ L++G EG G+ + A + H+ MPG ++LNV+ AA + ++ Sbjct: 118 ASIDYRQLPQTDRFILVMGNEGNGISQEMAAQADQLVHIPMPGRAESLNVAVAAGILMFS 177 Query: 276 TQN 278 + Sbjct: 178 LRK 180 >gi|256073948|ref|XP_002573289.1| rRNA methylase [Schistosoma mansoni] gi|238658466|emb|CAZ29521.1| rRNA methylase, putative [Schistosoma mansoni] Length = 338 Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 63/299 (21%), Positives = 111/299 (37%), Gaps = 66/299 (22%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATK------------NALARLDWDANLPHP 90 ++ + LYG+H V AL R I++L + L + Sbjct: 21 RTRQSSELLYGIHPVLCALTFRHRDIYRLYVKDTLSNCKDPDNLVEISTFQITEKALKYG 80 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL---------------- 134 PV VP + + ++ A HQG+ LE +P ++ + L Sbjct: 81 IPVTRVPVEKLKELSNSRA-HQGVILEVSPTTIQSISDLSIKNLLFSWNNLSGNLPYAKK 139 Query: 135 -----LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +++LDH+ D N G ILRSA F +I + S S +++K + GA+E I + Sbjct: 140 YHRPTVLLLDHMMDTMNFGNILRSAAFFGISAVILSTSPCVSPSPLISKISVGAMESILF 199 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSK--------------------KPLEQEIKNDKI 229 R+++ ++ + + GF +G +S+ + + Sbjct: 200 YRLTDTVMDMKSLSNAGFLIVGTCGESQLPSSKVSKSTDLLKPDEVGANNDNTGVYPRPL 259 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGII------------KALNVSNAAAVALYIT 276 L LG+E +GL + + + G +LNVS AA + LY Sbjct: 260 ILALGSESRGLSENVLNSCDLLLRIPGYGDSTKLNQCISQTIPSSLNVSVAAGILLYQL 318 >gi|22124024|ref|NP_667447.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis KIM 10] gi|45439903|ref|NP_991442.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|51594392|ref|YP_068583.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|108809496|ref|YP_653412.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Antiqua] gi|108813973|ref|YP_649740.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Nepal516] gi|145601108|ref|YP_001165184.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Pestoides F] gi|150260899|ref|ZP_01917627.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CA88-4125] gi|153947104|ref|YP_001399039.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|162419568|ref|YP_001604683.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Angola] gi|165926178|ref|ZP_02222010.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165936350|ref|ZP_02224919.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Orientalis str. IP275] gi|166011464|ref|ZP_02232362.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166213686|ref|ZP_02239721.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Antiqua str. B42003004] gi|167402131|ref|ZP_02307608.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419397|ref|ZP_02311150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426644|ref|ZP_02318397.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468213|ref|ZP_02332917.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis FV-1] gi|218927258|ref|YP_002345133.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis CO92] gi|229836148|ref|ZP_04456316.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides A] gi|229839886|ref|ZP_04460045.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841968|ref|ZP_04462123.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229904503|ref|ZP_04519614.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516] gi|270488503|ref|ZP_06205577.1| RNA methyltransferase, TrmH family [Yersinia pestis KIM D27] gi|21956767|gb|AAM83698.1|AE013610_10 putative RNA methylase [Yersinia pestis KIM 10] gi|45434758|gb|AAS60319.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|51587674|emb|CAH19274.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|108777621|gb|ABG20140.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516] gi|108781409|gb|ABG15467.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Antiqua] gi|115345869|emb|CAL18727.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CO92] gi|145212804|gb|ABP42211.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides F] gi|149290307|gb|EDM40384.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CA88-4125] gi|152958599|gb|ABS46060.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|162352383|gb|ABX86331.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Angola] gi|165915964|gb|EDR34572.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Orientalis str. IP275] gi|165922038|gb|EDR39215.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165989610|gb|EDR41911.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166205088|gb|EDR49568.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Antiqua str. B42003004] gi|166963391|gb|EDR59412.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048506|gb|EDR59914.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054333|gb|EDR64150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678621|gb|EEO74726.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516] gi|229690278|gb|EEO82332.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229696252|gb|EEO86299.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706596|gb|EEO92602.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides A] gi|270337007|gb|EFA47784.1| RNA methyltransferase, TrmH family [Yersinia pestis KIM D27] gi|320013391|gb|ADV96962.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 230 Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + L+ V+ PHN+ AI+R+A A + + L+ +A Sbjct: 10 CDMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQV-HAIWPTTQMYTRLSAAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 SD + +++G E G+ P+ Sbjct: 69 SWVQVKTHPHIADAIAYLKSQDMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISPE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|238797645|ref|ZP_04641141.1| tRNA guanosine-2'-O-methyltransferase [Yersinia mollaretii ATCC 43969] gi|238718509|gb|EEQ10329.1| tRNA guanosine-2'-O-methyltransferase [Yersinia mollaretii ATCC 43969] Length = 233 Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 56/157 (35%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + L+ V+ PHN+ AI+R+A A + S L+ +A Sbjct: 10 CEMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQV-HAIWPSTEMYTRLSAAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 SD + +++G E G+ + Sbjct: 69 SWVQVKTHPHITDAIAHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISEE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|224143649|ref|XP_002325029.1| predicted protein [Populus trichocarpa] gi|222866463|gb|EEF03594.1| predicted protein [Populus trichocarpa] Length = 571 Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 70/336 (20%), Positives = 120/336 (35%), Gaps = 60/336 (17%) Query: 1 MNLISKKKSEKIFSLKDSHY-AKLRRNHRDYKKMQSFNQKSRHTSQPENLF--------- 50 + ++ + +KI + + + D+++ + R T + F Sbjct: 217 LEVVDDPRWDKIKNRFRGRVGVRGQTEKPDFQRWNRQDNWGRKTWKEATEFTVPKIVGEG 276 Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNAL-------------ARLDWDANLPHPFPVKTVP 97 ++GV V AAL+ R+ + L + K V Sbjct: 277 VFGVGPVLAALSTGRREFYALYIQEGLDLSGNNRKRKDKKGFEKVLRMAKKIGLSTKEVS 336 Query: 98 PQTIDKIVGKEAVH------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 ++ IV L + L L L + LD V DP N+GAI+ Sbjct: 337 KHDLNMIVDNRPHQGLVLDASPLEMVKIQELDAVLPDEEKGSLWVALDEVTDPQNLGAII 396 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 RSA F G++ + S S V++K+++G+LE + N+ L G++ +G Sbjct: 397 RSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELMELRYCKNMMQFLVSSAENGWRVLG 456 Query: 212 LSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMP-------GI---- 259 S SK E+ L+LG+EG GLRP + + T + + G Sbjct: 457 GSVSSKAVSLSEVLPGQPTILVLGSEGTGLRPLVERSCTQLVRIPGNIPVDATVGGGDEV 516 Query: 260 -------------------IKALNVSNAAAVALYIT 276 +++LNVS AA V L+ Sbjct: 517 KDEEINLECSSAEFRSFLAVESLNVSVAAGVLLHHL 552 >gi|294142851|ref|YP_003558829.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea DSS12] gi|32562924|dbj|BAC79237.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea] gi|293329320|dbj|BAJ04051.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea DSS12] Length = 232 Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 50/152 (32%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L + LD V+ +NI A++R+A A + ++ Sbjct: 15 NRQPDLTLCLDRVHKTNNIAAVIRTADAVGIHQV-HAVWPDIEMRVSGNTASGSQQWVKT 73 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 S + +ILG E G+ P+ A Sbjct: 74 IKHYHMDDAVQAFRAQDMQILATNFSADAVDFREIDYTRPTVIILGNEHDGVSPEGIAAA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ +Y Q Sbjct: 134 DQHIIIPMIGMVQSLNVSVASALIMYEAQRQR 165 >gi|218130161|ref|ZP_03458965.1| hypothetical protein BACEGG_01749 [Bacteroides eggerthii DSM 20697] gi|317476654|ref|ZP_07935898.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA] gi|217987665|gb|EEC53993.1| hypothetical protein BACEGG_01749 [Bacteroides eggerthii DSM 20697] gi|316907117|gb|EFV28827.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA] Length = 270 Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 81/236 (34%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + + ++R +S A++ + L K+ Sbjct: 17 FSTLTEAQLRNRIEPSKGIFIAESPKVISVAMDAGYEPLALLCEQKHITGDAATIIERSG 76 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + + G L P + R ++ ++V+D V D NIGA Sbjct: 77 NIPVYTGERELLSTLTGYTLTRGVLCAMRRPKPRCIEEVCRKARRIVVVDGVVDTTNIGA 136 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T + + + G++ +P+ + L + Sbjct: 137 IFRSAAALGIDAVLLTPTSCDPLNRRAVRVSMGSVFLVPWTWLDGPLGKLNDLGFRTAAM 196 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 K+A+++G EG GL KT A + + M + +LNV Sbjct: 197 ALTDDSISIDDPILANEPKLAIVMGTEGDGLSHKTIAEADYVVRIPMSHGVDSLNV 252 >gi|206895173|ref|YP_002247200.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM 5265] gi|206737790|gb|ACI16868.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM 5265] Length = 238 Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 95/230 (41%), Gaps = 10/230 (4%) Query: 52 YGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 YG + AL + KI+ + + + +L P P+ VP + E Sbjct: 9 YGFSPLEEALRSGKVEKIWVRVDKMSKVKQLVDRLEKNRPIPLVAVPKEFF-----PEKE 63 Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 G L + +++++D V D N+GAI R++VA S II + Sbjct: 64 WVGFLPSEIDYLGWE-ELPEIGNMVVIVDGVTDSTNLGAIFRASVALSSPNIILDLHNTG 122 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 S + + + + GA R++ A+ ++ GF +GL + + K+A Sbjct: 123 SVTPKVVEISRGAALRARVWRLNIK-QAIPRLKENGFSVVGLEAHHGTKVYHLDLTGKVA 181 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L++G+E KG+R + ++ ++LNV A ++ALY + Sbjct: 182 LVVGSEDKGIRTTVRTLCDHFGNIPT--DFESLNVHVALSIALYEAKRQR 229 >gi|304399040|ref|ZP_07380909.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. aB] gi|304353500|gb|EFM17878.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. aB] Length = 221 Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ A++R+A A + S + SA Sbjct: 5 RQHDLTVCMEQVHKPHNVSAVIRTADAVGIHEV-HAVWPSQRMRTQASASAGSNSWVKVV 63 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + Q S + +++G E G+ + A Sbjct: 64 THPTIGDAVKQLKQQKMQVLATHLSADAVDFREIDYTLPTCILMGQEKTGITEEALALAD 123 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A A+ LY Q Sbjct: 124 RQIVIPMVGMVQSLNVSVACALILYEAQRQR 154 >gi|150007109|ref|YP_001301852.1| putative tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|256840404|ref|ZP_05545912.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262381103|ref|ZP_06074241.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298377529|ref|ZP_06987481.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_19] gi|301311228|ref|ZP_07217156.1| RNA methyltransferase, TrmH family [Bacteroides sp. 20_3] gi|149935533|gb|ABR42230.1| putative tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|256737676|gb|EEU51002.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262296280|gb|EEY84210.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298265548|gb|EFI07209.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_19] gi|300830802|gb|EFK61444.1| RNA methyltransferase, TrmH family [Bacteroides sp. 20_3] Length = 255 Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 90/257 (35%), Gaps = 18/257 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K + ++ G V+ L P+ + L+A + + Sbjct: 6 KVKYIRSLELK-KFRNENNVFVAEGNKLVADML--PAFECELLIAKPSWM-------ATQ 55 Query: 89 HPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 P K V + + Q + + +L++ LD + DP N Sbjct: 56 GDIPAKELLVAEEDDIRKASFLKNPQDVLAIFKRPNWDITEITPEKELVLALDGIQDPGN 115 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G I+R A F I+ +K + S ++ GAL H+ + S Sbjct: 116 LGTIIRLADWFGISHIVCSKDTADVFSPKTVQATMGALAHVKIHYTDLE--TFLQAQSAQ 173 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKA 262 + + + L ++ + LI+G EG G+RP + ++ ++ Sbjct: 174 AIPLYGTFLGGENLYEKTLSGNGILIMGNEGNGIRPAIEAFVNEKLYIPNYPEGRDTSES 233 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ A AV + Sbjct: 234 LNVAIATAVVCAEFRRR 250 >gi|227875536|ref|ZP_03993676.1| rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] gi|227843872|gb|EEJ54041.1| rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] Length = 307 Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 98/265 (36%), Gaps = 16/265 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY ++ N + ++ + L R LL T + L L Sbjct: 44 DYTNLKDVNLRRSFEAEHGLFLAESNEVIMRVLRAGYRP-RSLLVTPHWLEILAPVLAST 102 Query: 89 H---------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 P PV ++++VG + +A P L + S+ ++VL+ Sbjct: 103 SCTHGDPEGGPIPVFVATEAVLEQLVGFQLHRGAIASMERPALPDPAAILAQSRRVLVLE 162 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + D N+GA +RSA A + D I+ T + + + G + +P+ R+ DA Sbjct: 163 DLVDHTNVGAAVRSAAACNYDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPDAD 222 Query: 200 QKMHSWGF------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + + K+AL+ GAE GL+ T A + Sbjct: 223 LFHAAGFELAALALRDDAVDLRDYARKLAGDSTRKVALVAGAERDGLKRSTVAKADYVVR 282 Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278 + M + +LNV+ A AVA + T Sbjct: 283 IEMAHGVDSLNVAGACAVACWATAQ 307 >gi|255535419|ref|YP_003095790.1| RNA methyltransferase, TrmH family [Flavobacteriaceae bacterium 3519-10] gi|255341615|gb|ACU07728.1| RNA methyltransferase, TrmH family [Flavobacteriaceae bacterium 3519-10] Length = 242 Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 41/248 (16%), Positives = 86/248 (34%), Gaps = 21/248 (8%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K +QS ++K + + + G T+ + I ++ + A +L Sbjct: 6 KIKILQSLDKK-KFRQKYNLFLVEGNKTIKE-IPASRYVINEVFSVNPAELKL------- 56 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + V + +I + A + + + ++LD + DP N+G Sbjct: 57 KNVEAQAVSESELRRISFLQNP----KDSVAVCQLLPTEILPEPPVQLILDGIQDPGNLG 112 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F II ++ + + +++ G+ + + Sbjct: 113 TIIRLADWFGIGQIICSEDTVDIYNPKVIQASMGSFLRVNVFYADIKEYLTDSPIA---- 168 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNV 265 + + L ++ L+ G EG G+RP+ T + G ++LNV Sbjct: 169 -TIGTDMEGENLYNFKFPERFNLVFGNEGNGIRPEIDNLLTDKITIPRFGKSKSTESLNV 227 Query: 266 SNAAAVAL 273 S A + L Sbjct: 228 SMATGIIL 235 >gi|37912927|gb|AAR05259.1| predicted 23S rRNA methylase [uncultured marine gamma proteobacterium EB000-45B06] gi|40063153|gb|AAR37990.1| RNA methyltransferase, TrmH family, group 3 [uncultured marine bacterium 562] Length = 240 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 95/240 (39%), Gaps = 6/240 (2%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQT 100 ++ EN G H++ + L + KI ++ ++ + P + Sbjct: 2 NKKENDLRVGFHSIESILEHNPHKIKKITLPAKREDGRITKLIQKIEENKIPFEFSNKVK 61 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + + L + L + L+++LD++ DP N+GA +RSA D Sbjct: 62 QEPEAYISS---DLEMNFKDLKLFLDSDEAQNPLILILDNIIDPRNLGACIRSAAVIGVD 118 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K + +++ K + G E I ++NL + L+ + GLS + K Sbjct: 119 AMIINKHHCAPINSIAHKVSVGGAEVIKIFHVTNLVNCLKYLQGININIYGLSEHASKSH 178 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A+I+GAE G+R KT E +L + K+ NVS A + L Sbjct: 179 TDYNFTEASAIIMGAEESGVREKTLERCDHKINLSSNKLFKSFNVSVATGIILSEASRQR 238 >gi|20808975|ref|NP_624146.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] gi|20517641|gb|AAM25750.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] Length = 210 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 53/159 (33%), Gaps = 1/159 (0%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSAS 181 + R L++ +D V + HN AILR+ A + E A+ Sbjct: 16 FYEVLQKRQKDLVVFVDDVTNEHNFSAILRTCDAVGVMRVYYFSEAKKGIEINEAVSMAA 75 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 I + K + +S K + L++G E KG+ Sbjct: 76 NRWLFIERVYDREKAIKEIKERENLQVVVTWLDESSKDFREINYTKPTLLVVGNELKGVS 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A + LY Sbjct: 136 EDILNLADERIVIPMMGMVQSLNVSVATGIILYEALRQR 174 >gi|91225285|ref|ZP_01260453.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus 12G01] gi|269968767|ref|ZP_06182757.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|91189924|gb|EAS76196.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus 12G01] gi|269826612|gb|EEZ80956.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 244 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 90/249 (36%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L + S K+ Q+ AT L+ +A + Sbjct: 8 KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LASSSLKVKQVFATAAF---LEQNAGTLNR 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 F + K + + A + P++ + L++ LD V+DP N+G I Sbjct: 63 FDCVEASLDELTKASTLVSNNA----AIAVVEIPSVKEPQAKGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + II + + + + G+ + + + + Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQVSLVDLPSYLEHAKLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K + L++G+E G+R + T + G ++LNV+ A Sbjct: 179 EGESVHK-----TDFAAEGILLMGSESHGVREAAAKFVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNMRRQ 242 >gi|67923985|ref|ZP_00517438.1| tRNA (guanosine-2'-O-)-methyltransferase [Crocosphaera watsonii WH 8501] gi|67854160|gb|EAM49466.1| tRNA (guanosine-2'-O-)-methyltransferase [Crocosphaera watsonii WH 8501] Length = 216 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L ++ + V+ PHN+ AI+R+ A + + + S + Sbjct: 18 RQPDLTVLTEDVHKPHNLSAIIRTCDAVGILDVHSINTTDEFPTFSQVSQGSD-KWTFLH 76 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 T ++ A++LGAE G+ + Sbjct: 77 THPDIKTAITYLKSKKINIYAAHFTEKSLDYRDIDYTQPTAILLGAEKWGVSEEAANLVD 136 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS AAAV L+ Q Sbjct: 137 GNIIIPMLGMVQSLNVSVAAAVILFEAQRQR 167 >gi|329955404|ref|ZP_08296312.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056] gi|328525807|gb|EGF52831.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056] Length = 270 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 81/236 (34%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + + ++R +S A+N + L K+ Sbjct: 17 FSTLTEAQLRNRIEPSKGIFITESPKVISVAINAGYEPLALLCERKHITGDAATIIERCG 76 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV T + + + G L P + R ++ ++V+D V D NIGA Sbjct: 77 NIPVYTGKRELLATLTGYTLTRGVLCAMRRPKPHSIEEICREARRIVVIDGVVDATNIGA 136 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ T + + + G++ +P+ + L + Sbjct: 137 IFRSAAALGIDAVLLTPTSCDPLNRRAVRVSMGSVFLVPWTWLDTTLSKLHDLGFRTAAM 196 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 K+A+I+G EG GL +T A + + M + +LNV Sbjct: 197 ALTDDSISIDNPLLATEPKLAIIMGTEGDGLSYETIAEADYVVRIPMSHDVDSLNV 252 >gi|167763027|ref|ZP_02435154.1| hypothetical protein BACSTE_01392 [Bacteroides stercoris ATCC 43183] gi|167699367|gb|EDS15946.1| hypothetical protein BACSTE_01392 [Bacteroides stercoris ATCC 43183] Length = 253 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 16/255 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K ++ + G V L + L+AT L+ A Sbjct: 7 RIKYIRSLELK-KNRKADKVFLAEGPKLVGDLL--GHFRCRFLIATSEWLSAHRHLAVE- 62 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V V + + + + Q LA+ P S + + S L + LD V DP N+G Sbjct: 63 ---DVTEVSEEELSRASLLKTPQQVLAVFEQPDESVDVSVISRS-LCLALDDVQDPGNLG 118 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I + + A + + + S Sbjct: 119 TIIRLADWFGIEHIFCSPNTVDVYN----PKTVQATMGGIARVKLHYISLPELIASLEDI 174 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264 + + + + + + +++G EG G+ + + ++ ++LN Sbjct: 175 PVYGTFLDGENMYTQPLSAYGLIVMGNEGNGIGDEVKRLINRKLYIPNYPAERETSESLN 234 Query: 265 VSNAAAVALYITQNH 279 V+ A AV + Sbjct: 235 VAIATAVVCAEFRRQ 249 >gi|313680632|ref|YP_004058371.1| tRNA/rRNA methyltransferase (spou) [Oceanithermus profundus DSM 14977] gi|313153347|gb|ADR37198.1| tRNA/rRNA methyltransferase (SpoU) [Oceanithermus profundus DSM 14977] Length = 258 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 96/256 (37%), Gaps = 7/256 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + + + R + + G + A R L+ + A A Sbjct: 7 RNPKVRAWAELKTR-RGRLEQGRFLVEGAREAARARAAGIRPQAWLVWPERAGAEEAALL 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV + + K+ +E + + D + ++V + P Sbjct: 66 ADA---PVYELSEAAMRKVSYRENPPALIGVF-ERPARRLEDLPTRPRRVLVAVEIEKPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA+LRSA A D ++ E+ + ++++G + +P + + A + Sbjct: 122 NLGAMLRSADASGADAVLVVGEAVDPENPNVIRASTGTVFTLPLAAVDHD-AARAWLRER 180 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G Q + + +++ + + A ++GAE +GL P E A + M G+ +LN Sbjct: 181 GLQIVAAAPRARRVYWEADLSGPTAFVVGAEDRGLPPGWLEAADLAVRIPMEGVADSLNA 240 Query: 266 SNAAAVALYI-TQNHF 280 S +AA+ LY + Sbjct: 241 SVSAALLLYEGLRRQR 256 >gi|330467003|ref|YP_004404746.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032] gi|328809974|gb|AEB44146.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032] Length = 265 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 91/244 (37%), Gaps = 8/244 (3%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTI 101 G V AL SR + +L T AL R A PV V + + Sbjct: 23 EATGRFLAEGPQAVREAL-ARSRTVLELFGTPTALDRHADLAAAAAGADVPVSEVTDEAL 81 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + A +A+ + R +L+ VL + DP N G +LR+A A Sbjct: 82 AALAETVAPQGLVAVCQHLDVPLATALSRGPRLVGVLAGIRDPGNAGTVLRTADAAGAAA 141 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ + +S++G+L H+ +R + + + G + + + L+ Sbjct: 142 VVFAGEAVDPYNGKCVRSSAGSLFHVDVVRERDPAAVVDAARAAGLVVLAATGYGEADLD 201 Query: 222 QE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + G+E GL + A + + + G ++LN++ AAAV LY + Sbjct: 202 DLADAGRLAVPTAWLFGSEAHGLPDELIAAADARVRVPLHGRAESLNLAAAAAVCLYASA 261 Query: 278 N-HF 280 Sbjct: 262 RAQR 265 >gi|260772956|ref|ZP_05881872.1| RNA methyltransferase TrmH family [Vibrio metschnikovii CIP 69.14] gi|260612095|gb|EEX37298.1| RNA methyltransferase TrmH family [Vibrio metschnikovii CIP 69.14] Length = 244 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 88/249 (35%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L + + + + AT L + Sbjct: 8 KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LTHSAFNVQHVFATAEFLNSHAENVAS--- 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 T ++D++ K + A + P ++ + L++ LD V+DP N+G I Sbjct: 63 ---YTCTEASLDELT-KASTLVSNNAAIAVVEIPKIEVPKAQGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + I+ + + + + G+ + + Q + Sbjct: 119 IRVADWYGIKHIVASVDCADPYNPKTISATMGSFGRVQVSLVDLPHYLAQANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S + + L++G+E G+R + T + G ++LNV+ A Sbjct: 179 EGESVHT-----TSFSAQGILLMGSESHGIRESAAQWVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNMRRQ 242 >gi|319957584|ref|YP_004168847.1| RNA methyltransferase, trmh family, group 3 [Nitratifractor salsuginis DSM 16511] gi|319419988|gb|ADV47098.1| RNA methyltransferase, TrmH family, group 3 [Nitratifractor salsuginis DSM 16511] Length = 233 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 5/225 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG V AL ++ ++ K + L D + + + + + + Sbjct: 7 IIYGKQVVLHALRRHPEQVHKIYIAKKGV--LPQDLFEKYGDKITFIEN-RWAQQLSRGG 63 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQGL E +L V+ ++VLD + D NIGAI+RSA A DGI+ T Sbjct: 64 NHQGLLAEIEDYRPASLAEVKEGDFVLVLDTLTDAGNIGAIVRSAYALGVDGIVATG--I 121 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + S + + + +S +P+E+++ + K Sbjct: 122 GQLNFSAVTRTSSGALLEMPFALHRNILDVLHELKQAGHRLYGASMEGEPIEEKLFDRKR 181 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L+LG+E +G+ K +E + M +LNVS AAA+ ++ Sbjct: 182 TLVLGSEERGISKKARERLDETVAIRMKRPFDSLNVSAAAAIMIH 226 >gi|255690187|ref|ZP_05413862.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM 17565] gi|260624301|gb|EEX47172.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM 17565] Length = 255 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 78/255 (30%), Gaps = 15/255 (5%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S QK + + G V L L AT L Sbjct: 8 KIKYIHSLEQK-KIRKEERVFLAEGPKLVGDLLE--YFPCRFLAATSLWLQSHPNIYA-- 62 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + V + + + Q + + L + LD V DP N+G Sbjct: 63 --GEIAEVSQEELSR-ASLLKTPQQVLAILEQPQYTLTPDIARHSLCLALDDVQDPGNLG 119 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + II ++ + ++ G + + S + Sbjct: 120 TIIRLADWFGIEDIICSQNTVDVYNPKTVQATMGGIARVRVHYTSLPDFIRSQGKEIPVF 179 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264 L + + ++ + +++G EG G+ + + ++ ++LN Sbjct: 180 GTFLDGQN---MYEQPLSANGLIVMGNEGNGIGKEVEALINRKLYIPNYPQGQETSESLN 236 Query: 265 VSNAAAVALYITQNH 279 V+ A AV + Sbjct: 237 VAIATAVICAEFRRQ 251 >gi|260592420|ref|ZP_05857878.1| RNA methyltransferase, TrmH family [Prevotella veroralis F0319] gi|260535656|gb|EEX18273.1| RNA methyltransferase, TrmH family [Prevotella veroralis F0319] Length = 239 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 37/255 (14%), Positives = 79/255 (30%), Gaps = 34/255 (13%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S K + + G V L + Sbjct: 15 KIKLIHSLETK-KGREKVGLFVAEGPKVVKDLLQAGF---------------------IA 52 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + I + H L L + + +QL++ LD V DP N+G Sbjct: 53 KEVFEDIEDIKEISFL-----QHPQSMLGVFHLPTNGFKELSMNQLVLALDGVQDPGNLG 107 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F I + + + + ++ G++ + + A Sbjct: 108 TIIRVADWFGIKDIYCSHDTADCWNPKVVQATMGSIARVQLHYVDLNKMAES---LPADY 164 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALN 264 I + + + ++ + +++G EGKG+ P + ++ ++LN Sbjct: 165 PIYATLLDGENIYKQELSHHGMIVMGNEGKGISPLLRTKINRKLYIPSYSSDGNTAESLN 224 Query: 265 VSNAAAVALYITQNH 279 V+ A ++ + Sbjct: 225 VAIATSIVCAEFRRR 239 >gi|319902170|ref|YP_004161898.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P 36-108] gi|319417201|gb|ADV44312.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P 36-108] Length = 253 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 88/255 (34%), Gaps = 16/255 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S K ++ + G V L + L+AT + + +LP Sbjct: 7 RIKYIHSLELK-KNRKNDKVFLAEGPKLVGDLLEH--FPCQFLIATSEWI---SQNEDLP 60 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V + + + + + Q LA+ P + + L + LD + DP N+G Sbjct: 61 TD-DVTIITEEELSRASLLKTPQQVLAVFRQPEDTADFSVIS-HSLCLALDDIQDPGNLG 118 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I + + + A + T + + + Sbjct: 119 TIIRLADWFGIEHIFCSPNTVDAYN----PKTVQATMGGIARVKLHYTPLPELICALKGI 174 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264 + + + + + + +++G EG G+ + ++ ++ ++LN Sbjct: 175 PVYGTFLDGEDIYCQPLSSYGLIVMGNEGNGIGKEVEQLINRRLYIPNYPADRQTSESLN 234 Query: 265 VSNAAAVALYITQNH 279 V+ A AV + Sbjct: 235 VAIATAVVCAEFRRQ 249 >gi|311064540|ref|YP_003971265.1| rRNA methylase [Bifidobacterium bifidum PRL2010] gi|310866859|gb|ADP36228.1| rRNA methylase [Bifidobacterium bifidum PRL2010] Length = 289 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 87/264 (32%), Gaps = 20/264 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-------- 80 +K+ + R + + G +V A+ + L Sbjct: 15 RVRKVADLANR-RTRERFGRFLIEGPQSVREAVMWMPGAVRDLYVQAADGPDGPRIAGET 73 Query: 81 --LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + + H V + +I + A + + + Sbjct: 74 LTSIVERSQEHRIYVHPASEAVMRRISPDCQGIAAVGDADAVRATVQGTQLPEKPFVAAF 133 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI---SNL 195 V P N G ++R+A A CD ++ + + ++ +G+L HIP + + Sbjct: 134 WQVRGPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPVMTMGVDEFF 193 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI------ALILGAEGKGLRPKTQETAT 249 A +K+ + + + E D+ A+I G E +GL P Sbjct: 194 GWAGEKVLRTVAADVYGTDGREPRELPEALRDQDLSGVGKAVIFGNEARGLEPGLLGRCD 253 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + + + G ++LN++ +AA+ L Sbjct: 254 DIVRIPLYGKAESLNLATSAAIML 277 >gi|294852903|ref|ZP_06793576.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] gi|294821492|gb|EFG38491.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] Length = 276 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 65/280 (23%), Positives = 118/280 (42%), Gaps = 18/280 (6%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + +F + D+ +L +RD ++ ++ R G V Sbjct: 1 MQDIDTRSHDCVFVIDDADDIRLAP-YRDIREKDLVGRQQR-------FIAEG-KVVLNV 51 Query: 61 L--NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L ++ + LL +N L L LP PV +VP +D + G VH+G+ Sbjct: 52 LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110 Query: 118 TAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 P L + L++VL +++ N+G+I R+A AF D ++ + Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + + GA +PY + D + GF + L+ + + + + ++ AL+L Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 G EG+GL + E A + M +LNV+ A+ +AL Sbjct: 231 GTEGEGLPSRFLERL-ETARIPMSKTFDSLNVATASGIAL 269 >gi|313675661|ref|YP_004053657.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126] gi|312942359|gb|ADR21549.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126] Length = 246 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 92/251 (36%), Gaps = 13/251 (5%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 L +N+ K ++S K + + E + G LN+ K+ L+ +++ L+R Sbjct: 2 LTKNN--TKFIKSLQLK-KFRQKEELFIVEGAKNTLELLNSSY-KLKYLIVSEDFLSRHQ 57 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + N V + + + ++ LA+ ++ +VLD + Sbjct: 58 KEIN-SSEIEPIIVKEKELSALGAFQSNTDALAVV----HEKAPSKYDSNGFDLVLDDIR 112 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G I+R A + II ++ + + A + D + + Sbjct: 113 DPGNLGTIIRLADWYGIKNIICSETTAEFYN----PKVISASMGSIFRTNLYRRDLKEFL 168 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + I + K + Q L++G E G++ + + + G ++ Sbjct: 169 GKNQNRKIYGALLEGKNVHQVKFEADGLLVIGNESHGIQKELIPLISEKVTIPKIGQAES 228 Query: 263 LNVSNAAAVAL 273 LN + A A+ Sbjct: 229 LNAAMATAIIC 239 >gi|298346938|ref|YP_003719625.1| rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304389351|ref|ZP_07371316.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656609|ref|ZP_07909496.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236999|gb|ADI68131.1| rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304327469|gb|EFL94702.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492564|gb|EFU82168.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 283 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 99/266 (37%), Gaps = 14/266 (5%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY +++ N + ++ + AL LLA + A P Sbjct: 17 DYTQLKDVNLRRSLEAEQGLFMAESNEVIGRALRAGFTPRSLLLAPHWLEIIRPFLAASP 76 Query: 89 H--------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 P PV ++++VG +A + ++++ +++L+ Sbjct: 77 ATGFAPDGGPIPVFVASEDLLERLVGFHLHRGAIAAMLRKPAPNPREILKHASRVLILED 136 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + D N+GA +RSA A D I+ T + + + G + +P+ R+ D Sbjct: 137 LVDHTNVGAAVRSAAACGYDAIMVTPSCADPLYRRAVRVSMGTIFQVPWTRLERWPDPAL 196 Query: 201 KMHSWGF------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + + K+ALI GAE GL+P+T A + + Sbjct: 197 FHEAGFELAALALREDSQDLRDYAMELGAAPSRKVALIAGAERDGLKPQTIARADKVVRI 256 Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280 M + +LNV+ A A+A + T + Sbjct: 257 AMAHGVDSLNVAGAIAIACWATATNR 282 >gi|157819051|ref|NP_001102302.1| rRNA methyltransferase 1, mitochondrial [Rattus norvegicus] gi|149053705|gb|EDM05522.1| similar to hypothetical protein FLJ22578 (predicted), isoform CRA_a [Rattus norvegicus] Length = 320 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 60/261 (22%), Positives = 102/261 (39%), Gaps = 28/261 (10%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-----ARLDWDANLPHPFPVKTVPPQT 100 L+GV AL R + +LL PV Q Sbjct: 45 QRLERLFGVSPCLLALRAARRHVARLLLQAGKAGLQGERAELLRVAEARGIPVLRPRRQK 104 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRS 153 +D + G + VHQG+ +E + L D QL +VL+ + DP N+GA++RS Sbjct: 105 LDALCGYQ-VHQGVCMEVSRLRPRPCDEAADTSSGDDPQQLWLVLEGIQDPRNLGAVMRS 163 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-----------RISNLTDALQKM 202 A D +IT++R S + V++K+++GA+E + + + + Sbjct: 164 AYFLGVDRVITSRRNSCPLTPVVSKASAGAMEVMDVFASPDLASFLQAKAQQGWLVVGTV 223 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPG 258 G + S + I + L+LG EG GL T + + +P Sbjct: 224 GCPGPEISQSSKVPVTSCLEFIWDRPTLLVLGNEGSGLSQGVFATCQLLLTILPGRHLPP 283 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++LNVS A + L+ + Sbjct: 284 GLESLNVSVATGILLHSICSQ 304 >gi|289642391|ref|ZP_06474538.1| RNA methyltransferase, TrmH family, group 3 [Frankia symbiont of Datisca glomerata] gi|289507823|gb|EFD28775.1| RNA methyltransferase, TrmH family, group 3 [Frankia symbiont of Datisca glomerata] Length = 409 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 99/235 (42%), Gaps = 11/235 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLP--HPFPVKTV 96 SR + G + V AL + + A RLD L V V Sbjct: 150 SRADRGEPEELVVGRNAVVEALRAGVPASVLYVAAGTEYDERLDEARRLAPRAGVAVADV 209 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAI 150 +D++ G A HQGLAL P D LL+ LD V DP N+GA+ Sbjct: 210 ARGDLDRLCG-SAPHQGLALSVPPFRYAHPDDLLARAQEAPPGLLVALDGVTDPRNLGAV 268 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQT 209 +RSA AF G++ +R + +A K+++GA +P R +NL A + F Sbjct: 269 VRSAAAFGAHGVVVPERRAAGVTAAAWKTSAGAAARLPVARATNLVRALTGWAQAGLFVV 328 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + E E+ +D + L++G+EG+GL E + M G +++LN Sbjct: 329 GLAADGEVSLDELEMASDPLVLVVGSEGRGLSRLVGERCDLTVRIPMAGDVESLN 383 >gi|149371594|ref|ZP_01891010.1| RNA methyltransferase, TrmH family protein [unidentified eubacterium SCB49] gi|149355221|gb|EDM43781.1| RNA methyltransferase, TrmH family protein [unidentified eubacterium SCB49] Length = 259 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 42/253 (16%), Positives = 84/253 (33%), Gaps = 23/253 (9%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S ++K ++ Q G + + F + Sbjct: 23 QIKLITSLSKK-KYREQHGFFIAEGPKVIDEFIAEGLELHF----------HFTTEIVAN 71 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V + KI + LA+ P + + + +VLD V DP N+G Sbjct: 72 ETHVYHQVTSGELKKISKLTNPNTSLAVFKIPKKNAAI----TKGVRVVLDGVQDPGNLG 127 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R F +I +K + + ++ G+L + + + + Sbjct: 128 TIIRLCDWFGVSQLICSKDTVDCFNPKVVQATMGSLARVVISYVDIKSLLQETTLPIYGG 187 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNV 265 + S + +E++ L++G EG G+ + T + G ++LNV Sbjct: 188 VLEGVSLYSEKIEEDSY-----LVVGNEGNGISEEIIAILTHKITIPQYGASQKTESLNV 242 Query: 266 SNAAAVALYITQN 278 + A A+ L Sbjct: 243 ATATAILLSEVMR 255 >gi|319949870|ref|ZP_08023879.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] gi|319436460|gb|EFV91571.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] Length = 278 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 62/270 (22%), Positives = 104/270 (38%), Gaps = 16/270 (5%) Query: 25 RNHRDYKKMQSFNQKSRHTS---QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81 ++ N R + G + V L + R LL T + L +L Sbjct: 9 PADPRLDDLRDLNNSDRRPDLPGGRGLVIAEGTYVVGRMLLSRFRP-HVLLGTDSRLQQL 67 Query: 82 DWDA--------NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 +A + +++G + LA P + V ++ Sbjct: 68 RREATAEGWDADERAGDAVYLRTTKDVLSEVIGFRSSRDILAAADRPGPLAVDEVVDGAR 127 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+VL+ VNDP N+GAI R+ A DG++ + + + G + +P+ + Sbjct: 128 TLVVLEGVNDPENLGAIFRNCAALGVDGVLFGAATGDPLYRRVVRVSMGHVLRLPFAHLP 187 Query: 194 NLTDALQKM----HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 Q+ GF+TI L+ ++ PL + + +K+A +LGAEG GL Sbjct: 188 GTPTTWQRSLDDLRERGFRTIALTPAAEAPLSRAVDAEKVAFVLGAEGPGLTEHAMRACD 247 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M +LNV+ AAAVA Y Sbjct: 248 VRAAIPMTDGTDSLNVATAAAVAFYERARR 277 >gi|15611567|ref|NP_223218.1| hypothetical protein jhp0500 [Helicobacter pylori J99] gi|4155040|gb|AAD06078.1| putative [Helicobacter pylori J99] Length = 227 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 90/224 (40%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG ++ LN+ K+ ++ +K +L + L P + + K Sbjct: 4 VIYGKQVITHLLNSHHEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVRNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + + T L +S + + K Sbjct: 120 REFAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223 >gi|34762513|ref|ZP_00143511.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887846|gb|EAA24916.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 261 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 91/277 (32%), Gaps = 27/277 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K+++ I SLK K + G Sbjct: 6 MEIIESKENKLIKSLKKLKQKK-------------------YRESENKFLAEGYK----F 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+ ++ + ++ V + +++ +E Sbjct: 43 LDYNYSPEIIIIREDIYQSNFYFEKLNKFSCKRIVVTRKIFEELSSQENSQGV----IIL 98 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T D S L++LD V+DP N+G I+R A + II TK + + + +++ Sbjct: 99 YTKKTNDLKFLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKSTVDAYNEKVIRAS 158 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ ++ + + + P + +K A+I G EG G+ Sbjct: 159 MGSILNVNLYYLEKSEIINFLKENNYSIISTYLDKTAIPYNKIKLKEKNAIIFGNEGNGI 218 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + ++LNV+ A + LY + Sbjct: 219 SDDFINITDYKTIIPILSNTESLNVAVATGIILYKFR 255 >gi|296328847|ref|ZP_06871358.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153968|gb|EFG94775.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 256 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 89/277 (32%), Gaps = 27/277 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K+++ I SLK K + G Sbjct: 1 MEIIESKENKLIKSLKKLKQKK-------------------YRDSENKFLAEGYK----F 37 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+ ++ + ++ V + +++ +E Sbjct: 38 LDYNYSPEMIIVREDIFQSNFYFEKINKFSCKEIVVTRKIFEELSSQENSQG----IIIL 93 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T D S L++LD V+DP N+G I+R A + II TK + + + ++ Sbjct: 94 YNKKTNDLKFLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRAT 153 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ ++ + + + + +K A+I G EG G+ Sbjct: 154 MGSILNVNLYYLEKSEIINFLKENNYSIISTYLDKTAILYNKIELKEKNAVIFGNEGNGI 213 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + ++LNV+ A + LY + Sbjct: 214 SDDFINITDYKTIIPILSNTESLNVAVATGIILYKFR 250 >gi|307637236|gb|ADN79686.1| rRNA methylase [Helicobacter pylori 908] gi|325995827|gb|ADZ51232.1| rRNA methylase [Helicobacter pylori 2018] gi|325997421|gb|ADZ49629.1| putative rRNA methyltransferase [Helicobacter pylori 2017] Length = 227 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG ++ LN+ K+ ++ +K +L + L P + + K Sbjct: 4 VVYGKQVITHLLNSHHEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + + T L +S + + K Sbjct: 120 REFAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K + + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDMVLSVKMRRDFDSLNVSVAAGILM 223 >gi|257146499|emb|CAX30787.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont of Mocydia crocea] Length = 239 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A+R L + L++V+ PHNI A++R+A A I S ++ A +A Sbjct: 10 HQVSAMRQPDLTVCLENVHKPHNISAVIRTADAVGIPQI-HAIWCKNSSKSLSAAAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + + ++ Q +ILG E G+ + Sbjct: 69 HWVKVKTHATIENTISTCKAAGMQILAAHLTNQAIDFRQIDYTQPTCIILGQERAGISKQ 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A H+ M G++++LNVS A+A+ LY Q Sbjct: 129 ALALADHNIHIPMMGMVQSLNVSVASALILYEAQRQR 165 >gi|193617942|ref|XP_001949552.1| PREDICTED: RNA methyltransferase-like protein 1-like [Acyrthosiphon pisum] Length = 386 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 88/294 (29%), Gaps = 32/294 (10%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-- 75 Y L+ + + + Q ++ L G + ALN + + K Sbjct: 75 PSYLILKETCPLLSQAMMEIKNKKRRQQNSSILLEGKRLIQDALNAGVKPKQIFFSQKRV 134 Query: 76 -NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134 +L + +LP + P + ++ + QG+ + Sbjct: 135 LESLCLPEELRDLPASSTIFYKAPYKMIQLFSETETSQGIMGIFEIPTIDHRARKNAFPI 194 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ D++ +P N+GA+LR+ A +I K + + ++ GA + I + Sbjct: 195 TVICDNIREPGNLGAVLRTVTAVGASQVILMKGCTNLWGDKVLRAGCGAHFRMKIISDVS 254 Query: 195 LTDALQKMHSWGFQTIGLSSDS-------------------------KKPLEQEIKNDKI 229 + + K + Sbjct: 255 WSFLENIKGQVCLADNNYVGNIDYSNINENTNVNVFRKTAPIELPIAPYYEIDYCKITPL 314 Query: 230 ALILGAEGKGLRPK----TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 LI+G E GL + + ++ + I++LN + A + + + Sbjct: 315 ILIIGGETHGLSDEGYEFARSRKGIRLNIPLENGIESLNSATAVGILCFEAKKQ 368 >gi|194333759|ref|YP_002015619.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris aestuarii DSM 271] gi|194311577|gb|ACF45972.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris aestuarii DSM 271] Length = 216 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 57/167 (34%), Gaps = 1/167 (0%) Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + L R L +V+D+VN PHN+ AI+R+ + + I Sbjct: 1 MINPERFHKIRRLLEQRQPDLTVVMDNVNKPHNLAAIIRTCDSVGIETIHAVSNRPSI-R 59 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + + S A + S + A+++ Sbjct: 60 KKQKTAGGSTRWVQLSLHESMENLANTLKSNGTRLLAAHYSSTSVDFRSIDYTRPTAIVM 119 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 GAE G T H+ M G+ ++LNVS AAAV L+ Q Sbjct: 120 GAEKLGPSSDTISLVDQAIHIPMQGMAESLNVSVAAAVILFEAQRQR 166 >gi|212705009|ref|ZP_03313137.1| hypothetical protein DESPIG_03077 [Desulfovibrio piger ATCC 29098] gi|212671561|gb|EEB32044.1| hypothetical protein DESPIG_03077 [Desulfovibrio piger ATCC 29098] Length = 196 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 57/152 (37%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L +VL +++DPHN+ AI RS AF D + +P SAS Sbjct: 19 HRQPDLTLVLANIHDPHNVSAIYRSCDAFGVDKVHLYYTDTPFPVLGRKTSASARKWVES 78 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + KPL A+I+G E G+ + A Sbjct: 79 VRHRDRQELETSLRAQNMQILATTFTPTAKPLRTWDFTRPTAIIMGNEHSGVNEELISMA 138 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ M G+I++ NVS A+A+ L Sbjct: 139 DGELYIPMYGMIQSFNVSVASAIILSEACRQR 170 >gi|149019402|ref|ZP_01834764.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP23-BS72] gi|147931272|gb|EDK82251.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP23-BS72] Length = 169 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 56/152 (36%), Positives = 89/152 (58%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + LL++LD + DPHN+G+ILR+A A + G+I K + + V+AK+A+GA+EH+P Sbjct: 18 QEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVP 77 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R++NL+ L K+ GF T G + + K KIALI+G EGKG+ ++ Sbjct: 78 IARVTNLSQTLDKLKDEGFWTFGTDMNGTPCHKWNTK-GKIALIIGNEGKGISSNIKKQV 136 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 M + M G +++LN S AAA+ +Y + Sbjct: 137 DEMITIPMNGHVQSLNASVAAAILMYEVFLNR 168 >gi|299532311|ref|ZP_07045704.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44] gi|298719719|gb|EFI60683.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44] Length = 263 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 53/252 (21%), Positives = 95/252 (37%), Gaps = 10/252 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ K+++ +Q S + ++L G H AAL + + A + Sbjct: 12 SRDNAFVKELRRLSQDSTAYRKQGQVWLEGDHLCRAALVRGLKPKLAVFAQSFWPQAPEE 71 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V + D+I E+ + + V+ +VLD V D Sbjct: 72 WVQAAGKVVV--LADALFDEISALESPARMG----YVMDWDAGVQVQPGVATVVLDRVQD 125 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G+ILRSA AF I+ K + S + ++ GA ++ + Sbjct: 126 AGNVGSILRSASAFGFTQILALKGTAALWSQKVLRAGMGAHF----GLHLVEAASVDDVQ 181 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + SS + + A +G EG+G+ E A+ + PG ++L Sbjct: 182 GLQVPLVVTSSHQGTLIHEADLPWPCAWAMGHEGQGVGDALMEMASHRISIAQPGGEESL 241 Query: 264 NVSNAAAVALYI 275 NV+ AAA+ L+ Sbjct: 242 NVAAAAAICLHA 253 >gi|317151947|ref|YP_004119995.1| TrmH family RNA methyltransferase, group 3 [Desulfovibrio aespoeensis Aspo-2] gi|316942198|gb|ADU61249.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio aespoeensis Aspo-2] Length = 266 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 53/252 (21%), Positives = 94/252 (37%), Gaps = 12/252 (4%) Query: 38 QKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLL--ATKNALARLDWDANLPHPFPVK 94 Q S + +++ G V L ++P+R F + + P + Sbjct: 15 QNSDQDKKDGKIYVVGNKPVRELLLDDPARVDFVAFRVGRHDKGVEEILELCRVAKVPYR 74 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIG 148 +V + +D + HQG+A A L L + L++ LD V D N+G Sbjct: 75 SVSAKDLDFM--YRGNHQGVAARCAALSYVPLLTMLETAPDAPLPLIIALDQVQDTGNVG 132 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 + R+ A G+I + A +S++GAL +P + NL AL+ ++ + Sbjct: 133 VLARTLYALGGAGLIVCQHQGAYLGAGAVRSSAGALNKLPVAKAGNLAAALKDCANYDYT 192 Query: 209 TIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + L+LG E KG+RP + + +LNV+ Sbjct: 193 LYYAQTGEGSLNAYEAELKTPAVLVLGNEEKGVRPGVAKLCHHSLSIPFRREFDSLNVAQ 252 Query: 268 AAAVALYITQNH 279 A AV + Sbjct: 253 AGAVLVSEFSRR 264 >gi|197334204|ref|YP_002154872.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri MJ11] gi|197315694|gb|ACH65141.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri MJ11] Length = 229 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ +N+ AI+R+A A I + + SA Sbjct: 16 RQTDLTLCLEEVHKANNVSAIVRTADATGIHKI-HAVWPTEQMQMLGHTSAGARNWVDVE 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + SD+ + A+ILG+E G+ K A Sbjct: 75 THKNIEDAFATLKEQGMQILATNLSDTAVDFREIDYTKPTAIILGSEKTGISKKALAMAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 165 >gi|189241058|ref|XP_968858.2| PREDICTED: similar to RNA methyltransferase like 1 [Tribolium castaneum] gi|270014173|gb|EFA10621.1| hypothetical protein TcasGA2_TC016258 [Tribolium castaneum] Length = 403 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 39/283 (13%), Positives = 90/283 (31%), Gaps = 24/283 (8%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 Y K++ N R + + + + + + L G + AL + + L + K+ + Sbjct: 118 YTKMKDNDRRISSILVDVKSKKEQDKKDLILLEGKRLIRDALQSGCALKYILFSRKDEIE 177 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 L + +P + + + G+ + V + ++ D Sbjct: 178 YLKPFLPKV-GAQLYKMPYKEMQMWSD-LTTNPGIMGLFKTPPVEAFEPVNPLPITVICD 235 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 ++ +P N+G ILR A C +I TK + + A GA + + Sbjct: 236 NIREPGNLGTILRICAAVGCARVILTKGCVNLWDTKVLRGAVGAHFKLKIEKKEWDEIGD 295 Query: 200 QKMHSWGFQTIGLS------------------SDSKKPLEQEIKNDKIALILGAEGKGLR 241 + F ++ + +++G E G+ Sbjct: 296 EVDPDAKFFIADNRIVSSEDTGGDLGELLGKIPIVPYFGVDFRTSNHLVVVVGGETLGVS 355 Query: 242 PKTQETA----TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + E A + ++ + + +LNV A + + + Sbjct: 356 KNSYELALRSNGARLNIPLSNDVDSLNVGAALGIIAFEIKKQL 398 >gi|323345715|ref|ZP_08085938.1| TrmH family RNA methyltransferase [Prevotella oralis ATCC 33269] gi|323093829|gb|EFZ36407.1| TrmH family RNA methyltransferase [Prevotella oralis ATCC 33269] Length = 257 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 82/262 (31%), Gaps = 17/262 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDAN 86 K ++S QK ++ G VS L + A + + Sbjct: 5 AKIKYIRSLEQK-KNRRNEGVFVAEGPKIVSDFLK----TQTAVFIACTARWKAENTYWQ 59 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 V + + KI + H L A +L + LD + DP N Sbjct: 60 CLETTETAIVTDEELKKISFLQ--HPQEVLAVFRQAENKTIAPDVRRLYLALDGIQDPGN 117 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G I+R A F + I + + + +++ G+L HI L Sbjct: 118 LGTIIRIADWFGIEHIYCSIDTADIYNPKTVQASMGSLAHIGISYTDIP---LLIDSLPT 174 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKA 262 I + K + E LI+G EG G+ + + + + Sbjct: 175 DYPIYGTLLDGKDIYNEPLTPHGLLIMGNEGNGISAPVKSRISRRLLIPNYPQGRKTADS 234 Query: 263 LNVSNAAAVALYITQNH--FAK 282 LNV+ A A+A + K Sbjct: 235 LNVAIATAIACSEFRRRQTINK 256 >gi|148973891|ref|ZP_01811424.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium SWAT-3] gi|145965588|gb|EDK30836.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium SWAT-3] Length = 244 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 81/249 (32%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K +++ QK + + G V L N + + AT + L+ Sbjct: 8 KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LFNSDLVVKNVFATADFLSENHASLIEFDC 65 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 +V A A + P ++ L++ LD V+DP N+G I Sbjct: 66 VEASLDDLTKASTLVSNNA-------AIAVVEIPKVELPEAKGLMIALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + I+ + + + + G+ + + Q + Sbjct: 119 IRVADWYGIKHIVASSDCADPYNPKTISATMGSFGRVHISQTDLPAYLEQANLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K L++G+E G+R + T + G ++LNV+ A Sbjct: 179 EGESVHK-----TDFTANGILLMGSESHGIREHAAKFVTDKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNMRRQ 242 >gi|85711929|ref|ZP_01042984.1| rRNA methylase SpoU [Idiomarina baltica OS145] gi|85694326|gb|EAQ32269.1| rRNA methylase SpoU [Idiomarina baltica OS145] Length = 230 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 1/154 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L +V++ V+ HN+ A++R+A A + S + Sbjct: 15 FRQPDLTVVMEGVHKHHNLSAVVRTADAVGVHEM-HAIWLSSKMRVSGGTALGSQNWVNV 73 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + Q + SD + A++LG E G + + A Sbjct: 74 HHHSQLSPAVEQIKQQGMQVVVTHLSDQAVDFREIDYTQPTAILLGQEKHGATEEALKIA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G++++LNVS A AV LY Q + Sbjct: 134 DHHVKIPMVGMVQSLNVSVAGAVMLYEAQRQREQ 167 >gi|258654827|ref|YP_003203983.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM 44233] gi|258558052|gb|ACV80994.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM 44233] Length = 268 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 48/253 (18%), Positives = 99/253 (39%), Gaps = 6/253 (2%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 ++D+ +L D++ ++ +++ + G V L + + L+ Sbjct: 6 EVRDADDPRL----ADFRDLKRADRRPDRPGGRGLVIAEGTVVVRRLLASTY-PVRALIG 60 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 L D P V + + +++G LA P D + ++ Sbjct: 61 VARRFEELADDLA-DVDVPYYVVDAELMAQVIGFHLNRGVLATADRVAHPPAADLLAGAR 119 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + VL+ V D N+G+I R+A ++ + + + G + H+P+ + Sbjct: 120 SVAVLEGVGDHENLGSIFRNAAGLGIGAVLLADGCADPLYRRSVRVSMGTVLHVPFAPLP 179 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 L + + + GFQ I L+ + L + ++AL++G+EG GL A Sbjct: 180 WLDEGVDLLRRNGFQLIALTPAGECRLADTRVSGRVALLVGSEGPGLTDAAMAAADLRVR 239 Query: 254 LHMPGIIKALNVS 266 + M I +LNV+ Sbjct: 240 IPMHRGIDSLNVA 252 >gi|223985232|ref|ZP_03635316.1| hypothetical protein HOLDEFILI_02622 [Holdemania filiformis DSM 12042] gi|223962810|gb|EEF67238.1| hypothetical protein HOLDEFILI_02622 [Holdemania filiformis DSM 12042] Length = 239 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 85/237 (35%), Gaps = 7/237 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106 + G +V A + + R + +L+ + + PV+ P + ID+ Sbjct: 3 WFEGALSVKAVMMSGRRPVIKLVIDQKKKDKDTAFILRQAAQRQIPVERWPREKIDQQAA 62 Query: 107 KEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 H G+ ++ + VL+ + DP N+G R+ A C G++ Sbjct: 63 -GRTHGGILALAGDRNYQSVQECLDAPQPFIAVLEGIEDPFNLGYAFRTLYAAGCTGVLM 121 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 R + + KS++GA E + + +L A+++ G Sbjct: 122 GSRDWQTAQPTIVKSSAGASEQLAWCLCEDLGAAVRQCRQAGCVLYCAQRSDAIDYFDAD 181 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVALYITQNHF 280 N I L +G E +GL E + + +++ LN ++A A + Sbjct: 182 FNQPIVLAIGGELRGLSRDVLEQSDQNIVIPYARPVRSALNGTSAVAAISFEVVRQR 238 >gi|313206009|ref|YP_004045186.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM 15868] gi|312445325|gb|ADQ81680.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM 15868] gi|315022322|gb|EFT35350.1| tRNA/rRNA methyltransferase [Riemerella anatipestifer RA-YM] gi|325336550|gb|ADZ12824.1| rRNA methylase [Riemerella anatipestifer RA-GD] Length = 242 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 90/248 (36%), Gaps = 21/248 (8%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K +QS ++K + + + G + L N + +I + + + D Sbjct: 6 KVKILQSLDKK-KFRQKYNLFLVEGNKIIKE-LKNTNIEIESVYSVNSDGIEFLADVL-- 61 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P+ + + + + A PT ++ + +VLD + DP N+G Sbjct: 62 --VPITEKELKKVSFL-------KTPKDSLAVCYLPTPKITEDNNINLVLDGLQDPGNLG 112 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I+ + + + ++ G+ + + ++ Sbjct: 113 TIIRLADWFGIEQIVCSTDTVDVYNPKVIQATMGSFTRVNVVYSDI-----EQFLLNSPA 167 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNV 265 + + L + K L+LG EG G+RP + + G ++LNV Sbjct: 168 ENIGTDMEGENLYKTNFPKKFNLVLGNEGNGMRPSVERLMKRNITIPRFGNHRATESLNV 227 Query: 266 SNAAAVAL 273 S AA + L Sbjct: 228 SMAAGIIL 235 >gi|302550200|ref|ZP_07302542.1| rRNA methylase [Streptomyces viridochromogenes DSM 40736] gi|302467818|gb|EFL30911.1| rRNA methylase [Streptomyces viridochromogenes DSM 40736] Length = 271 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 89/239 (37%), Gaps = 4/239 (1%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 RDY + + + G + A LL+ K D L Sbjct: 16 RDYTGLTDVELRRKREPAEGLFIAEGEKVIRRAKEAGYEMRSMLLSAKWVDVMRDVIDEL 75 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P PV V P+ +++ G LA L D +R ++ +++++ VND NI Sbjct: 76 PA--PVYAVSPELAERVTGYHVHRGALASMQRKPLPTAADLLRRTRRVVIMESVNDHTNI 133 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK--MHSW 205 GAI RSA A D ++ + + K + GA+ +PY R + + + Sbjct: 134 GAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARPDSWPRVWSRSARPAS 193 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 D + D++AL+LGAEG L + A + M + +LN Sbjct: 194 RSSPDPRREDPPPRRGRPHTMDRVALMLGAEGDALSTQALVAADEWVRIPMSHGVDSLN 252 >gi|269103907|ref|ZP_06156604.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163805|gb|EEZ42301.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 236 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + L+ V+ P+N+ AI+R+A A + + SA Sbjct: 16 RQPDLTVCLEQVHKPNNVSAIIRTADAVGVHKV-HAVWQAEQLRLHSHTSAGSRNWVELE 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + S+ + A+ILG E G+ P+ A Sbjct: 75 THANITDAVHAMKAQGMQVLATNLSERAVDFREIDYTKPTAIILGGEKHGITPEALALAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 165 >gi|251788493|ref|YP_003003214.1| putative methyltransferase [Dickeya zeae Ech1591] gi|247537114|gb|ACT05735.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya zeae Ech1591] Length = 397 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 88/244 (36%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + + R + V Sbjct: 153 RRQRAEETRVYGENACQALFLSRPEAIVRGWFLQEVTPRFRDALRWMAANRKAYHVVEDD 212 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + + G E H G+ L + ++ L+ V +PHN+G I+RS Sbjct: 213 ELVRASGTE-HHGGVCFLIKKRQGLDVAAYLREAGETDCVLALEDVGNPHNLGGIMRSCA 271 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ S ES ++A G EH+ I L DAL + + G+ + SS Sbjct: 272 HFGVKGVLV-NDASQLESGAAVRTAEGGAEHVKAISAEGLVDALAQFRAAGYTIVTTSSH 330 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L + K ++LG EG GL + + G +++LN+S A + L Sbjct: 331 KGTTLSKVALPAKSVIVLGQEGDGLSDSAWQQGDVKVSIDGTGNVESLNISVATGILLAE 390 Query: 276 TQNH 279 Sbjct: 391 WWRQ 394 >gi|238759850|ref|ZP_04621006.1| tRNA guanosine-2'-O-methyltransferase [Yersinia aldovae ATCC 35236] gi|238701911|gb|EEP94472.1| tRNA guanosine-2'-O-methyltransferase [Yersinia aldovae ATCC 35236] Length = 230 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + R L + L+ V+ PHN+ AI+R+A A + + L+ +A Sbjct: 10 CEMLTTRQPDLTVCLEEVHKPHNVSAIIRTADAVGIHQV-HAIWPTTQMYTRLSSAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 SD + +++G E G+ + Sbjct: 69 SWVQVKTHTHIAGAIAHLKSQDMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISEE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|91788542|ref|YP_549494.1| tRNA/rRNA methyltransferase SpoU [Polaromonas sp. JS666] gi|91697767|gb|ABE44596.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas sp. JS666] Length = 260 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 95/254 (37%), Gaps = 10/254 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ K+++ +Q S + ++L G H AAL + + + Sbjct: 13 SRDNTLIKELRKLSQDSTAYRKQGRVWLEGDHLCRAALARGKKPTLAIF--SESFWPSAP 70 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 +P + +I G E+ + + P S + ++LD V D Sbjct: 71 VEWSRAAIKNIVIPDALLPEISGLESPARMGFVLELPAASGLEAGAAS----VILDRVQD 126 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G+ILRSA AF II K + S + ++ GA + Sbjct: 127 AGNVGSILRSAAAFGFGQIIALKGTAALWSPKVLRAGMGAHF----ALQLVEGVEPAALA 182 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + SS L Q+ A +G EG+G+ + + PG ++L Sbjct: 183 ALTVPIVVTSSHQGSFLHQQPLPRPCAWAMGHEGQGVSDDLMARSALKVRIDQPGGEESL 242 Query: 264 NVSNAAAVALYITQ 277 NV+ AAA+ LY + Sbjct: 243 NVAAAAAICLYASA 256 >gi|71282637|ref|YP_271614.1| tRNA guanosine-2'-O-methyltransferase [Colwellia psychrerythraea 34H] gi|71148377|gb|AAZ28850.1| tRNA (guanosine-2'-O-)-methyltransferase [Colwellia psychrerythraea 34H] Length = 235 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 1/152 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ ++ HN+ A++R+ A + S +A + Sbjct: 16 RQPDLTVCMEGLHKSHNLAAVVRTCDAIGISDV-HAVWKSEEAEVRGGSAAGSQNWIDVH 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + SD+ + A+ILG E G + E A Sbjct: 75 NYHKTADAIAALKAQGMQVLVTNLSDTAVNFTEIDYTKPTAIILGQEKFGTSEEALELAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G++++LNVS A +V LY Q A Sbjct: 135 QHIVIPMVGMVQSLNVSVACSVVLYEAQRQRA 166 >gi|271970249|ref|YP_003344445.1| rRNA methylase protein [Streptosporangium roseum DSM 43021] gi|270513424|gb|ACZ91702.1| rRNA methylase protein [Streptosporangium roseum DSM 43021] Length = 274 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 88/275 (32%), Gaps = 26/275 (9%) Query: 22 KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81 K+ + +++ Q+ + ++GV ++ A+ + L L+ Sbjct: 3 KVTARNALFQQWQALLTNRTKRQRTGEFLIHGVRPITLAVEHGWPLRTLLYPAGQRLSAW 62 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEA-VHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 P+ V P+ + ++ +E+ + +A+ L + D Sbjct: 63 ARRLIDDSGVPLAEVAPELLWELGERESETPELIAVGALLPDDLDRLRPGPGFLGVAFDR 122 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-----HIPYIRISNL 195 +P NIG ++RSA AF G+I T + ++++G+L P Sbjct: 123 PGNPGNIGTLVRSADAFGAAGLIVTGHAADVYDPKSVRASTGSLFSLPVVRRPSPDDVLD 182 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 Q+ + +G P+ L++G E G+ + +E + + Sbjct: 183 WVGAQRDGGLPIRIVGTDESGSTPISGCDLTVPTLLVVGNETAGMSARWREMCDEVVRIP 242 Query: 256 MPG----------IIKALNVSNAAAVALYITQNHF 280 M G + LY Sbjct: 243 MGGAASSLNAASAGT----------LVLYEAARQR 267 >gi|284008963|emb|CBA75850.1| tRNA (guanosine-2'-O-)-methyltransferase [Arsenophonus nasoniae] Length = 225 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R L + L++V+ PHNI A++R+A A I S ++ A +A Sbjct: 1 MRQPDLTVCLENVHKPHNISAVIRTADAVGISQI-HAIWCQNSTKSLSAAAAGSNHWVKV 59 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + + Q +ILG E G+ + A Sbjct: 60 KTHATIEKAISTCKAAGMQILAAHLTKQAIDFRQIDYTQPTCIILGQERTGISKQALALA 119 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 H+ M G++++LNVS A+A+ LY Q Sbjct: 120 DHNIHIPMMGMVQSLNVSVASALILYEAQRQR 151 >gi|269956119|ref|YP_003325908.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM 15894] gi|269304800|gb|ACZ30350.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM 15894] Length = 301 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 53/279 (18%), Positives = 96/279 (34%), Gaps = 28/279 (10%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K++++ + +S + L + G V A+ + + T R A+ Sbjct: 24 RVKQVRALSGRS-ARLRHAQLLVEGPQGVREAVRCSPDAVRDVYLTPATAQRYAEIADAA 82 Query: 89 H--PFPVKTVPPQTIDKIVGKE-------AVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 V + + + H E L R S L+ VL Sbjct: 83 RAAGIRVHLGTHEVLAAMSPDAQGVLAVVRTHTPTLDEALGALDGPDGGRRRSLLVAVLA 142 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N G ++R+A A D ++ + + +S +G+L H+P + L D + Sbjct: 143 TVRDPGNAGTVIRAADAAGADLVVLAGDSVDVHNPKVVRSTAGSLFHVPVVSGVPLADVV 202 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQE-----------------IKNDKIALILGAEGKGLRP 242 +H G + L+ A + G E GL Sbjct: 203 DAVHERGLTVLAADGAGPHDLDDLLDVAGPSHAGERGAGTPDLAASTAWVFGNEAWGLPE 262 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HF 280 K +E A ++ + + G ++LN++ AA V LY + Sbjct: 263 KDRELADAVVRVPIRGRAESLNLATAATVCLYASSRAQR 301 >gi|290769952|gb|ADD61721.1| putative protein [uncultured organism] Length = 257 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 90/255 (35%), Gaps = 16/255 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K ++ + G V L + L+AT L+ A Sbjct: 7 RIKYIRSLELK-KNRKADKVFLAEGPKLVGDLL--GHFRCRFLIATAEWLSAHRHLAVE- 62 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V V + + + + Q LA+ P + + S L + LD V DP N+G Sbjct: 63 ---DVTEVSEEELSRASLLKTPQQVLAVFEQPDEFVDVSVISRS-LCLALDDVQDPGNLG 118 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I + + + ++ G + + S + + S Sbjct: 119 TIIRLADWFGIEHIFCSPNTVDAYNPKTIQATMGGIARVKLHYTSLP----ELIASLEDI 174 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264 + + + + + + +++G EG G+ + + ++ ++LN Sbjct: 175 PVYGTFLDGENMYTQPLSAYGLIVMGNEGNGIGDEVERLINRKLYIPNYPAERETSESLN 234 Query: 265 VSNAAAVALYITQNH 279 V+ A AV + Sbjct: 235 VAIATAVVCAEFRRQ 249 >gi|315083589|gb|EFT55565.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL027PA2] Length = 240 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 82/228 (35%), Gaps = 9/228 (3%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 ++ G + A LLA + D L V V +T+ Sbjct: 2 EAEHGLFIAEGAKVIRRACEAGYPPRSFLLAPRWIDGLRDLFDGL--DVEVFVVS-ETLA 58 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + V VH+G + + ++ L+V + + D N+GAI+R A DG+ Sbjct: 59 EQVTGFHVHRGALASMCRQTRWSAADLMAARRLVVCEDIVDHTNVGAIIRCAAGIGWDGV 118 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQKMHSWGFQTIGLSSDS 216 + R + K++ G + +P+ R+ + + + + Sbjct: 119 LLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGELRDHGFTVAAMELSGDSVTLD 178 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + K+AL++G EG GL A + + M G + +LN Sbjct: 179 EFSADLRQNPRKVALLMGTEGAGLSAHWISQADVVVRIPMAGGVDSLN 226 >gi|294155366|ref|YP_003559750.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145] gi|291599973|gb|ADE19469.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145] Length = 243 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 82/232 (35%), Gaps = 18/232 (7%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + + G H + A++ + + + + + + + + + + Sbjct: 24 YREKEGLFIIEGEHLIDEAIDKNIVVEIFEIGSSSKILKYERTTLIT-----YELAKKVL 78 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 D + + + + ++ LD + DP NIG I+R +F D Sbjct: 79 DAQSPQS---------VFAVCKIVKNNIVLGDKIVFLDDLQDPGNIGTIIRLCKSFDIDT 129 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + + +++ G+ +++ + + M L L+ Sbjct: 130 LI--VKNFDIYNPKCLRASQGSFFKTNIVQVDKYDELSKLMSKDFSIISTLLDKEATELK 187 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K L+LG EG G+ + + ++ + ++LNV+ AA+ L Sbjct: 188 NFTFPKKSVLVLGNEGNGISQNAIDLSKHKVYIPIS--FESLNVATCAAIIL 237 >gi|329962850|ref|ZP_08300735.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057] gi|328529407|gb|EGF56320.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057] Length = 253 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 85/255 (33%), Gaps = 16/255 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S K ++ + G V L L+AT L++ Sbjct: 7 RIKYIHSLELK-KNRKADKVFLAEGPKLVGDLL--GHFPCCFLVATSEWLSQNHHLPL-- 61 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V V + + + + Q LA+ P + S L + LD V DP N+G Sbjct: 62 --TDVTEVSEEELSRASLLKTPQQVLAVFKQPEDETDASVIGRS-LCLALDDVQDPGNLG 118 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I + + + A + T + S Sbjct: 119 TIIRLADWFGIEHIFCSPNTVDAYN----PKTVQATMGGIARVKLHYTPLPALIGSLTDI 174 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264 + + + + + ++ +++G EG G+ + ++ ++ ++LN Sbjct: 175 PVYGTFLDGENIYGQPLSENGLIVMGNEGNGIGEEVRQLINRKLYIPNYPANRETSESLN 234 Query: 265 VSNAAAVALYITQNH 279 V+ A AV + Sbjct: 235 VAIATAVVCAEFRRQ 249 >gi|184201210|ref|YP_001855417.1| putative RNA methyltransferase [Kocuria rhizophila DC2201] gi|183581440|dbj|BAG29911.1| putative RNA methyltransferase [Kocuria rhizophila DC2201] Length = 316 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 92/293 (31%), Gaps = 39/293 (13%) Query: 26 NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNP----------SRKIFQLLA 73 ++ +++ + S+ G V A+ + + + Sbjct: 13 SNPRADRVRDVAALTRRSTRSKRGLFRAEGPQNVREAVRAALDDDAGPSRWAPALDAVYV 72 Query: 74 TKNALARLDWDANLP------HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 T+ L R A ++ V P+ + + QG+ D Sbjct: 73 TRQELERHPGIAADLEALESRRGVFLRMVTPEVLGAMTD-AVTPQGMLAVCRIPEVTLQD 131 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK--------- 178 A+ +++L+ VL V DP N G ++R+A A D ++ ++ + + Sbjct: 132 ALADTRLVCVLARVQDPGNAGTVVRAADAAGADAVVLSEGSVDPYNPKAVRSTAGSLFHL 191 Query: 179 ----------SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + A E + ++ + + + + + Sbjct: 192 PVLTGVDLVSFVAAARERSVQVLAADGHARASVDELADAALLHWAGTAPHSEHEVRLDGP 251 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HF 280 A + G E +GL E A + + G ++LNV AA V LY + Sbjct: 252 TAWLFGNEAQGLSDAELELADLPVAVPLYGRAESLNVGTAATVCLYASARAQR 304 >gi|160915474|ref|ZP_02077685.1| hypothetical protein EUBDOL_01482 [Eubacterium dolichum DSM 3991] gi|158432594|gb|EDP10883.1| hypothetical protein EUBDOL_01482 [Eubacterium dolichum DSM 3991] Length = 243 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 42/243 (17%), Positives = 86/243 (35%), Gaps = 11/243 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDK 103 E + G +V A L R + +++ K+ ++ ID Sbjct: 2 ETYIVEGNISVKAVLQAKRRVVQRIVVDAKKKDKDTSYILRLAKKQGITIQAAQRAEIDT 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + H G+ +++ + + + L +++ V DP N G +LR+ A CDG Sbjct: 62 LA-QGKTHGGILAYCGERRYQSIEDIISKENVFLALVEGVEDPFNFGYVLRTLYAAGCDG 120 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 II KR S + ++++GA E+I ++ +Q+M + L Sbjct: 121 IIVGKRNWTSAVNTVTRASAGASEYINIFVSEDMEATIQQMKKQQITFLCAQRKDAISLY 180 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN---VSNAAAVALYITQN 278 K + +G E +GL + + + N + + A+ + Sbjct: 181 DYHFPKKCCIAIGGEMRGLSKAVMAQSDQNLFIPYRSEFR--NAMTAAASTAIFAFELVR 238 Query: 279 HFA 281 Sbjct: 239 QKN 241 >gi|257459137|ref|ZP_05624256.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter gracilis RM3268] gi|257443522|gb|EEV18646.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter gracilis RM3268] Length = 233 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 84/233 (36%), Gaps = 5/233 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG LN +K +++ K + + ++ + + + + Sbjct: 2 IIYGKQLFLHLLNRHPQKFIRIILAKEC-EKEIFKKIAATGVKIERADAKK-AQALARGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG E L +V++ + + +L + D NIGAI+RSA A D +I Sbjct: 60 NHQGFLAEVEEFSFGDLASVKDDKFVPILYGLTDVGNIGAIMRSAYALGADSVIVVANN- 118 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + AS + + + ++ I +S ++ K Sbjct: 119 --LNMAGVVRASSGAAYELNVVKAADGLSVLNELKQSGFEIYAASAGGTSFKELELGAKN 176 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 AL++G E +G+ + + + M +LNVS A A+ N K Sbjct: 177 ALVMGNEEEGIPARALKKCDCAVSIKMREGWDSLNVSAAFAILCDGILNGRNK 229 >gi|239917947|ref|YP_002957505.1| rRNA methylase [Micrococcus luteus NCTC 2665] gi|239839154|gb|ACS30951.1| rRNA methylase [Micrococcus luteus NCTC 2665] Length = 298 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 90/278 (32%), Gaps = 30/278 (10%) Query: 27 HRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNP--------------SRKIFQ 70 H +++++ + + G AL R + Q Sbjct: 10 HPRAERVRAVAALAGRSARRRTGTFLVEGPQACREALRAHLGEGPTAAAGQWRAGRVLTQ 69 Query: 71 LLATKNALARLDWDANLPHPFP-----------VKTVPPQTIDKIVGKEAVHQGLALETA 119 + + + R A L V+ + + + +A+ Sbjct: 70 VYVSGGLVDRDPALAELVARVRDRPTPGGERVLVREASDEVLTAMADAVTGQDIVAVARM 129 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 P + ++L VL V DP N G ++R+A A D ++ T + + +S Sbjct: 130 PEPQAVEAVLEEARLAAVLCRVQDPGNAGTVIRAADAAGADAVVLTPGSVDPFNPKVVRS 189 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAE 236 +G+L H+P + A+ + G Q L+ A + G E Sbjct: 190 TAGSLFHLPVVTAVPAEAAVAAARAAGLQVWAADGYGADRLDALAPGVVAAPTAWLFGNE 249 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +GL A + + G ++LNV AA V LY Sbjct: 250 AQGLDDGELALADRRVAVPLYGAAESLNVGTAATVCLY 287 >gi|328949678|ref|YP_004367013.1| tRNA guanosine-2'-O-methyltransferase [Marinithermus hydrothermalis DSM 14884] gi|328450002|gb|AEB10903.1| tRNA guanosine-2'-O-methyltransferase [Marinithermus hydrothermalis DSM 14884] Length = 223 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +++++V+ PHN+ AILR+A A + S ++ Sbjct: 16 RQPDLTVLMENVHKPHNLSAILRTADAVGVYEAHAVNPTGGVPTYNETSGGSEKWVYLRV 75 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 K + L SD +A++LGAE G+ P+ A Sbjct: 76 HPDIATAVQHLKERGFLVYAAHL-SDEAVDYRAVDYTRPVAVLLGAEKWGVSPEAAALAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS AAAV L+ Q Sbjct: 135 RHIVIPMMGMVQSLNVSVAAAVILFEAQRQR 165 >gi|317124864|ref|YP_004098976.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM 43043] gi|315588952|gb|ADU48249.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM 43043] Length = 271 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 91/242 (37%), Gaps = 6/242 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + R + + AL R L + L L Sbjct: 15 DYVSLTDVALRRRAEPERGLYIAESEKVIRRALGAGHRP-RSFLMAERWLTDLADVVADA 73 Query: 89 --HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 H PV I+++ G LA P L V +++ ++VL+ + D N Sbjct: 74 ESHDVPVFVGEHDVIERLTGFHLHRGALASMQRPGLPEVASLVADARRIVVLEDIVDHTN 133 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GA+ RSA A D ++ T R + + + G + +P+ RI + + S G Sbjct: 134 VGAVFRSAAALGVDAVLVTPRCADPLYRRSIRVSMGTVFQVPWTRIDPWPGGMAVLQSHG 193 Query: 207 FQTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F + + K+A++LGAEG GL T A + + M G + +L Sbjct: 194 FTVAALALSDDAVALDVLEAAPPTKVAVVLGAEGDGLGGTTVAAADVVVRIPMAGGVDSL 253 Query: 264 NV 265 NV Sbjct: 254 NV 255 >gi|332295141|ref|YP_004437064.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM 14796] gi|332178244|gb|AEE13933.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM 14796] Length = 253 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 13/235 (5%) Query: 44 SQPENLFL-YGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPP 98 + GVH + AL + L+ + ++ V Sbjct: 18 KKSGQFIFFEGVHALEEALLANYIPDYVLIKDVDILEKKFFKVKIFEIFLERLKFLVVKE 77 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 I ++ E+ G+ + LD + DP N+G ILRS++AF Sbjct: 78 DAIKRLSS-ESTPTGIISVGNLPKEKDFGPFPW----VYLDKIQDPGNLGTILRSSLAFG 132 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 C GI ++ + + +S++GA +P+ + + S + + Sbjct: 133 CGGIFLSEDSCNIYNPKVIRSSAGAFFKVPFRKRNFSDIVRDMDTSLRVFSFSPRAKEPF 192 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L + + L+ G EG+G+ + + + ++ +++LNV+ + L Sbjct: 193 FLHN--YDGRCLLVFGNEGRGISSEIESKSYKRVYIPTQ-NVESLNVAMCVNIVL 244 >gi|34112942|gb|AAQ62387.1| predicted rRNA methylase [uncultured marine gamma proteobacterium EBAC31A08] Length = 240 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 95/240 (39%), Gaps = 6/240 (2%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQT 100 ++ EN G H++ + L + KI ++ ++ + P + Sbjct: 2 NKKENDLRVGFHSIESILEHSPHKIKKITLPAKREDGRITKLIQKIEENKIPFEFSNKVK 61 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + + L + L + L+++LD++ DP N+GA +RSA D Sbjct: 62 QEPEAYISS---DLEMNFKDLKLFLDSDKAQNPLILILDNIIDPRNLGACIRSAAVIGVD 118 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K + +++ K + G E I ++NL + L+ + GLS + K Sbjct: 119 AMIINKHHCAPINSIAHKVSVGGAEVIKIFHVTNLVNCLKYLQGININIYGLSEHASKSH 178 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A+I+GAE G+R KT E +L + K+ NVS A + L Sbjct: 179 TDYNFTEASAIIMGAEESGVREKTLERCDHKINLSSNKLFKSFNVSVATGIILSEASRQR 238 >gi|222086838|ref|YP_002545372.1| RNA methylase protein [Agrobacterium radiobacter K84] gi|221724286|gb|ACM27442.1| RNA methylase protein [Agrobacterium radiobacter K84] Length = 276 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 51/261 (19%), Positives = 95/261 (36%), Gaps = 10/261 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYG---VHTVSAALNNPSRKI--FQLLATKNALA 79 + + + ++ T + G + ++ A + LL A Sbjct: 12 PDDPRIAEFRDIRER-DLTGRESRFIAEGTVVLRLLAGAHAAGGDFVAEKVLLLRNRAAG 70 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 + P P+ +D IVG V + L + L++ Sbjct: 71 LEEIITAFPPDVPIYVADGSVLDGIVGFHLHRGVLALGRRTADTGMDAFLGRLPKRPLVL 130 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 V +++ NIG++ R+A AF D ++ + + + G++ +PY R Sbjct: 131 VGCGISNHDNIGSMFRNAAAFGADAVLLDETCCDPLYRKALRVSVGSVLTMPYRREFRDV 190 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 D L + GF LS K + D IAL++G EG+GL + T + Sbjct: 191 DLLTALAERGFAIWSLSPRGKTDIRAVPPTDHIALVVGTEGEGLPQEILSTF-GSVRIPQ 249 Query: 257 PGIIKALNVSNAAAVALYITQ 277 + +LNV+ A+ +AL+ Sbjct: 250 APGLDSLNVATASGIALFEMA 270 >gi|194366972|ref|YP_002029582.1| TrmH family RNA methyltransferase [Stenotrophomonas maltophilia R551-3] gi|194349776|gb|ACF52899.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas maltophilia R551-3] Length = 278 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 55/273 (20%), Positives = 109/273 (39%), Gaps = 8/273 (2%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 K++ R + + L LYG + V A + + + +L Sbjct: 5 WKNARRPSSRPPRATPLPPREGGTPPPPGRGNDELRLYGWNAVQALFDKRPQALRKLYLV 64 Query: 75 KNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEA----VHQGLALETAPLLSPTLDA 128 ++ + R+ + + + V ++K+ V L PL D Sbjct: 65 ESLIPRMQPVLKWCVANRVGYRVVEEGDLNKLAATTHHEGLVADVLRAPVVPLAQWLEDL 124 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L + LD V +PHN GAILRSA F ++ + + S A+ A G E +P Sbjct: 125 GEGPALALWLDGVGNPHNFGAILRSAAHFGVKALLLPAGSTLALSGAAARVAEGGAESVP 184 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +++ + A+ ++ + GF + + + + ++ ++GAEG+G+ Sbjct: 185 LVQLPDNAQAMAQLRAAGFGLAATLVEGGEDVFRASLPARLVYVMGAEGEGMDRSLASEC 244 Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279 + G +++LNV++A AV L + ++ H Sbjct: 245 DLQVSIPGSGAVESLNVASATAVLLAQWASRRH 277 >gi|166368124|ref|YP_001660397.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] gi|166090497|dbj|BAG05205.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] Length = 157 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 53/153 (34%), Gaps = 1/153 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + + L +VL + P N G I R+ A + + L ++ ++ Sbjct: 1 MTEAILRVVLINPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPYVK 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + D G + IG + + L+ G+E G+ Sbjct: 61 LMYHLTINDFCDYQQKSGGRAIGFTVRGSSSYVEYSYQSGDWLLFGSETDGIPADLLNKC 120 Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNHF 280 ++ M +++LN+S + A+ L+ + Sbjct: 121 DDTVYIPMAEPGVRSLNLSVSVAIGLFEARRQL 153 >gi|12045106|ref|NP_072917.1| RNA methyltransferase [Mycoplasma genitalium G37] gi|1723134|sp|P47494|Y252_MYCGE RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MG252 gi|3844850|gb|AAC71472.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma genitalium G37] gi|166079076|gb|ABY79694.1| RNA methyltransferase, TrmH family, group 3 [synthetic Mycoplasma genitalium JCVI-1.0] Length = 242 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 98/247 (39%), Gaps = 14/247 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 + Q GV A+NN ++ L + + + Sbjct: 2 KKPRQQSCLF---GVKAFEEAINN---QVHIKLVNISIRHKKLIPLIEAKKINFQIHSTN 55 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRS 153 + + +A+ L LD + L++LD + DP+N GAILR+ Sbjct: 56 WFNNQYRDINHQELVAVLDTNQLLIPLDQLVKVVENKKCSTLVMLDEIQDPYNFGAILRT 115 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 +A DGII K + + K++ G++ + ++++NL+ + K+ GF T+ + Sbjct: 116 CLASEVDGIIFKKNNQVPINNTVMKTSMGSVFYQNLVQVANLSYTITKLKEIGFWTVVST 175 Query: 214 SDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 D K D K LI+G E +G+ + A + M I +LNVS A + Sbjct: 176 LDPIWKPIDYRKVDFAKKILIVGNEDRGVNQLITKNADCRIKIPMNNKINSLNVSVALGI 235 Query: 272 ALYITQN 278 L+ +N Sbjct: 236 ILFAWKN 242 >gi|72080967|ref|YP_288025.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448] gi|71914091|gb|AAZ54002.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448] Length = 233 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 98/234 (41%), Gaps = 8/234 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++ G ++++ A+ N K + + VK V +DK+V Sbjct: 4 YICGRNSLADAIKNG-------FIFKEIYLLKPTNDQIFLKQKVKIVSRDFLDKLVSLNH 56 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 LE +++++LDH+ D +N+G I+R+A F II K+ + Sbjct: 57 QGFVGVLENFKFFEIDTLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILPKKRA 116 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228 + K +SG + +I ++++ A+ K+ F + + +++ N Sbjct: 117 AKLNETTMKVSSGGFVGLKFILVNSIVSAINKLKEMDFWIYATDLKEKSRKIQEIQFNYP 176 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A+ILG E G++ + + + + G + +LNV+ A + L+ + + K Sbjct: 177 CAIILGNEATGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQNIKK 230 >gi|329954919|ref|ZP_08295936.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056] gi|328527023|gb|EGF54034.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056] Length = 253 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 86/255 (33%), Gaps = 16/255 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K ++ + G V L + L+AT L+ + Sbjct: 7 RIKYIRSLELK-KNRKADKVFLAEGPKLVGDLL--GHFRCRFLIATAEWLSAHKHLSVE- 62 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + V + + + + Q LA+ P + + S L + LD V DP N+G Sbjct: 63 ---DITEVSEEELSRASLLKTPQQVLAVFEQPEEAMDASVISRS-LCLALDDVQDPGNLG 118 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I + + A + T + + S Sbjct: 119 TIIRLADWFGIEHIFCSPNTVDVYN----PKTVQATMGGIARVKLHYTSLPELIGSLKDI 174 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264 + + + + + +++G EG G+ + ++ ++ ++LN Sbjct: 175 PVYGTFLDGANMYTQPLSAHGLIVMGNEGNGIGNEVEQLINRKLYIPNYPSERETSESLN 234 Query: 265 VSNAAAVALYITQNH 279 V+ A AV + Sbjct: 235 VAIATAVVCAEFRRQ 249 >gi|315452502|ref|YP_004072772.1| 23S rRNA methyltransferase [Helicobacter felis ATCC 49179] gi|315131554|emb|CBY82182.1| 23S rRNA methyltransferase [Helicobacter felis ATCC 49179] Length = 227 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 8/227 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---PVKTVPPQTIDKIVG 106 ++G + L + +I + K + + V + + + Sbjct: 2 IVFGKQVILHLLKHHPSQILEFYLLKEIDKKTFSLLQAHQQKYQSALLRVDAKK-AQAMA 60 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 K HQG + P S L +++ L+VL ++D N+GA+ RS DG+I K Sbjct: 61 KGGNHQGWLAKVLPPKSSALGVLKSLDKLLVLCGLSDVGNVGALFRSVACLGFDGVIMDK 120 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + AS + + + + + + + Q + Sbjct: 121 ----ALPFEGLARASMGALYDVPFCVCPNPLDILQGLKDVRVHCYGAHIEGQNVRQVVFK 176 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +A+ LG+EG GL PK ++ ++ M G I +LNVS A A+ + Sbjct: 177 PPLAIFLGSEGAGLAPKLVRRMDTLVNIGMEGKIDSLNVSVAGAILM 223 >gi|332532503|ref|ZP_08408381.1| RNA methyltransferase, TrmH family [Pseudoalteromonas haloplanktis ANT/505] gi|332038146|gb|EGI74593.1| RNA methyltransferase, TrmH family [Pseudoalteromonas haloplanktis ANT/505] Length = 243 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 86/249 (34%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K ++ QK ++ Q + G V LN+P + + AT + + Sbjct: 8 KLIRQLGQK-KYRKQYNQYLVQGEKNVLELLNSPLNVVN-IFATNEFINAYQGKYPQANF 65 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 +V A A + P + + L++ LD V+DP N+G I Sbjct: 66 IEADEETLTKASTLVSNNA-------AIAIVDMPKAALPQANGLILALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + I+T+ + + + + G+ + ++ + Sbjct: 119 IRVADWYGIKHIVTSTDSADAYNPKTISATMGSFVRVSVSQVDLPDYLQSLNLPVYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K L++G+E G+R + T+ + G ++LNV+ A Sbjct: 179 DGQSVHK-----TQFTGSGVLLMGSESHGIRETCAKLVTNKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNFKRQ 242 >gi|312601582|gb|ADQ90837.1| TRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168] Length = 233 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 97/234 (41%), Gaps = 8/234 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++ G ++++ A+ N L + L + V +DK+V Sbjct: 4 YICGRNSLADAIKNGFIFKEIYLLRP-----TNDQIFLKQKVKI--VSRDFLDKLVSLNH 56 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 LE +++++LDH+ D +N+G I+R+A F II K+ + Sbjct: 57 QGFVGVLENFKFFEIDTLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILPKKRA 116 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228 + K +SG + +I ++++ A+ K+ F + + +++ N Sbjct: 117 AKLNETTMKVSSGGFVGLKFILVNSIVSAINKLKEMDFWIYATDLKEKSRKIQEIQFNYP 176 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A+ILG E G++ + + + + G + +LNV+ A + L+ + + K Sbjct: 177 CAIILGNEATGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQNIKK 230 >gi|163750719|ref|ZP_02157955.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella benthica KT99] gi|161329563|gb|EDQ00555.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella benthica KT99] Length = 231 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 50/152 (32%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L + LD V+ +NI A++R+A A I ++ Sbjct: 15 NRQPDLTLCLDKVHKTNNIAAVIRTADAVGIHQI-HAVWPDIEMRVSGNTASGSQQWVKT 73 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 S + A+ILG E G+ + A Sbjct: 74 IKHYHMHDAEAAFRAQGMQILATNFSKEAVDFREIDYTRPTAIILGNEHDGVSAEGIAAA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ +Y Q Sbjct: 134 DQHIIIPMIGMVQSLNVSVASALIMYEAQRQR 165 >gi|108562956|ref|YP_627272.1| hypothetical protein HPAG1_0531 [Helicobacter pylori HPAG1] gi|107836729|gb|ABF84598.1| 23S rRNA methyltransferase [Helicobacter pylori HPAG1] Length = 227 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG ++ LN+ K+ ++ +K + + L P + + K Sbjct: 4 VIYGKQVITHLLNSHKEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLAKVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + + T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223 >gi|254303889|ref|ZP_04971247.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324081|gb|EDK89331.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 256 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 90/277 (32%), Gaps = 27/277 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K+++ I SLK K + G Sbjct: 1 MEIIESKENKLIKSLKKLKQKK-------------------YRDSESKFLAEGYK----F 37 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+ ++ + ++ V + +++ +E Sbjct: 38 LDYNYSPETIVIREDIFQSNFYFEKINKFTCKKIVVIRKVFEELSSQENSQG----IIIL 93 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T D S L++LD V+DP N+G I+R A + II TK + + + ++ Sbjct: 94 YNKKTNDLKSLSNNLIILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRAT 153 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ ++ + + + P + +K A+I G EG G+ Sbjct: 154 MGSILNVNLYYLEKSEIINFLKENNYSIISTYLDKTAIPYNKIKLKEKNAVIFGNEGNGI 213 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + ++LNV+ A + LY + Sbjct: 214 SDDFINITDYKTIIPILSNTESLNVAVATGIILYKFR 250 >gi|19704210|ref|NP_603772.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714434|gb|AAL95071.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 261 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 89/277 (32%), Gaps = 27/277 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K+++ I SLK K + G Sbjct: 6 MEIIESKENKLIKSLKKLKQKK-------------------YRDSENKFLAEGYK----F 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+ ++ + ++ V + +++ +E Sbjct: 43 LDYNYSPEMIIVREDIFQSNFYFEKINKFSCKEIVVTRKIFEELSSQENSQG----IIIL 98 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T D S L++LD V+DP N+G I+R A + II TK + + + ++ Sbjct: 99 YNKKTNDLKFLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRAT 158 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ ++ + + + + +K A+I G EG G+ Sbjct: 159 MGSILNVNLYYLEKSEIINFLKENNYSIISTYLDKTAILYNKIELKEKNAVIFGNEGNGI 218 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + ++LNV+ A + LY + Sbjct: 219 SDDFINITDYKTIIPILSNTESLNVAVATGIILYKFR 255 >gi|50310205|ref|XP_455122.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644258|emb|CAG97829.1| KLLA0F00946p [Kluyveromyces lactis] Length = 400 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 57/316 (18%), Positives = 103/316 (32%), Gaps = 50/316 (15%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 KK ++I + S + R + +Y KM P +++G ++V +AL Sbjct: 83 KKKYYDRIKQEESSKREQFRSHRSEYTKMHPLQG---LKPNPLVDYVFGTNSVISALTAK 139 Query: 65 SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ------------ 112 R+ F L L + + V ++ + Sbjct: 140 KREYFVKLHHYGPLNTQIQSLCSKNNIQTEEVDKHRLNLYTNYAVHNNVVLECKPLQPPE 199 Query: 113 -------------------GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + + + L + LD V DPHN+GAI+RS Sbjct: 200 LSHLGLVNHEACTFDKSEIDYDQAVNTREKFMTNDNKKNPLGIYLDEVVDPHNVGAIIRS 259 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A D ++ + + S V++K +SG +E +P + +K G S Sbjct: 260 AYFLGADFMVLSHKNCAPLSPVVSKVSSGTMELLPIFTTAKPLQFFEKSKQDGGWMFVTS 319 Query: 214 SDSKKPLEQEIKND---------KIALILGAEGKGLRPKTQETATSMAHLHM-------P 257 S + + + L++G EG G+R + + Sbjct: 320 HMSISQKGNHLTMNELSGMLNELPVVLVVGNEGNGVRTNLLNRSDFTVEIPFGRDPTEGR 379 Query: 258 GIIKALNVSNAAAVAL 273 I +LNVS A A+ + Sbjct: 380 NTIDSLNVSVATALLI 395 >gi|317012366|gb|ADU82974.1| RNA methyltransferase [Helicobacter pylori Lithuania75] Length = 227 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG V LN+ K+ ++ +K + + L P + + K Sbjct: 4 VIYGKQVVMHILNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLAKVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + + T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSNQAENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223 >gi|261839617|gb|ACX99382.1| 23S rRNA methyltransferase [Helicobacter pylori 52] Length = 227 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG ++ LN+ K+ ++ +K + + L P + + K Sbjct: 4 VIYGKQVITHLLNSHKEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ +L ++ +Q L+VL + D NIG I RS+ DG+I ++ Sbjct: 62 NHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSSYCLGMDGVI--LDFT 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + + T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K + + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDMILSVKMRRDFDSLNVSVAAGILM 223 >gi|60593968|pdb|1X7P|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes In Complex With The Cofactor Adomet gi|60593969|pdb|1X7P|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes In Complex With The Cofactor Adomet gi|11141830|gb|AAG32066.1| rRNA methyltransferase [Streptomyces viridochromogenes] Length = 287 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 39/282 (13%), Positives = 87/282 (30%), Gaps = 26/282 (9%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 + ++ + +++ Q+ ++ + GV +S A+ + L + Sbjct: 8 RTPAARRITSRNARFQQWQALLGNRNKRTRAGEFLVMGVRPISLAVEHGWPVRTLLYDGQ 67 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQ 133 L++ + + P + ++ G++ + + + LD + Sbjct: 68 RELSKWARELLRTVRTEQIAMAPDLLMEL-GEKNEAPPEVVAVVEMPADDLDRIPVREDF 126 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-----HIP 188 L ++ D P NIG+I+RSA A G+I + +S++G+L +P Sbjct: 127 LGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVP 186 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ +G + L++G E GL + Sbjct: 187 SPGEVMDWVEARRAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLC 246 Query: 249 TSMAHLHMPGI---------IKALNVSNAAAVALYITQNHFA 281 + M G A+ LY Sbjct: 247 DYTVSIPMAGSASSLNAANAA--------TAI-LYEAVRQRI 279 >gi|332295579|ref|YP_004437502.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfobium narugense DSM 14796] gi|332178682|gb|AEE14371.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfobium narugense DSM 14796] Length = 244 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 80/241 (33%), Gaps = 7/241 (2%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 F+ G+H V A+ QLL +N + + V + + +I Sbjct: 2 RKDFVIGIHPVINAIKEGIE-FKQLLIARNKKLPFIEEFLQKNKDKRSLVVYKNLSEIER 60 Query: 107 KEAVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 QG+ + L+ +++ ++L+ + D NIGA+ R+A A G Sbjct: 61 LFPNSQGIVMFIKRFEYADEEETVLNVIKSKKVLLAFSGIMDVRNIGAVARTAQASGLVG 120 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPL 220 I ++ + A AS + + K ++ Sbjct: 121 GIILPKHRSLDITPAAIKASTGSLLSIPVVRLSNLRYFVKDLKRRGVSVIGVEKRGSVRY 180 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + I + G+E K L ++ M +LN+S A+++ LY Sbjct: 181 DMLKYDLPICCVFGSESKSLSDVFLRDLDQNVYIPMSNDFNSLNLSVASSILLYEIFRQK 240 Query: 281 A 281 Sbjct: 241 N 241 >gi|87302985|ref|ZP_01085789.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 5701] gi|87282481|gb|EAQ74440.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 5701] Length = 290 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 57/280 (20%), Positives = 100/280 (35%), Gaps = 23/280 (8%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 LI+ +++ + + H + RR + + G+ S L Sbjct: 22 ELITSRRNPLVGRFRALHQPRGRREQGLLLLEGTHLLEEALRL--------GLRP-SQVL 72 Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 +P ++ L A L P + ++ A L Sbjct: 73 ASPGWIER----HRSLLEGHPRMAALLQPVA---------EPVLEAVATTAHPDGVVLTL 119 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 P A ++ LD + DP N+G ++R+A+A + + ++ P + VL SA Sbjct: 120 PWPEPPACERVDFVLALDRLQDPGNLGTLMRTALAAGVEELWHSEGADPFQPKVLRASAG 179 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 AL +P R+ L L+ + G Q + P Q L+LG EG GL Sbjct: 180 AALA-LPCRRLEQLLPRLESARTGGVQVVASVVAGGIPYWQLDWTLPTVLLLGNEGAGLA 238 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 P+ ++ + G +++LNV+ AAA L Sbjct: 239 PELLAASSHQVTIPHSGAVESLNVAVAAAPLLLERWRQLT 278 >gi|157818915|ref|NP_001101752.1| hypothetical protein LOC360569 [Rattus norvegicus] gi|149053441|gb|EDM05258.1| similar to putative RNA methyltransferase (predicted) [Rattus norvegicus] Length = 418 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 45/315 (14%), Positives = 89/315 (28%), Gaps = 54/315 (17%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 Y K R + + + + + L G ++ AL + + Sbjct: 92 LRYDKACPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKMFFFSRLEY 151 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQ 133 + L D + V + I + + P P + Sbjct: 152 IKELPVD--KLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDPVKMTYPETQLHHSLP 209 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-------- 185 LL++ D++ DP N+G ILRSA C ++ TK + + ++ GA Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNNV 269 Query: 186 -------HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND----------- 227 H+P + D D + Sbjct: 270 EWETVPNHLPPDTRVYVADNCGLYAQVQMSNKTGDRDWACDRRFLKFHKNEVDLDTKARK 329 Query: 228 ------------------KIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNV 265 AL++G E G+ ++ + A + + + +LN Sbjct: 330 DWLPKLEVQSYDLDWTEAPAALVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNS 389 Query: 266 SNAAAVALYITQNHF 280 + AA++ L+ + Sbjct: 390 AMAASILLFEGKRQL 404 >gi|212633214|ref|YP_002309739.1| tRNA guanosine-2'-O-methyltransferase [Shewanella piezotolerans WP3] gi|212554698|gb|ACJ27152.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella piezotolerans WP3] Length = 217 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L + LD V+ +NI A++R+A A I ++ Sbjct: 4 NRQPDLTLCLDKVHKTNNIAAVIRTADAVGIHEI-HAVWPEIEMRVSGNTASGSQQWVKS 62 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + S++ + A+ILG E G+ P+ +A Sbjct: 63 KAHNKMSDAVAEFRRQDMQILATNFSETAVDFREIDYTRPTAIILGNERDGVSPEGIASA 122 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A A+ +Y Q Sbjct: 123 DQHVIIPMIGMVQSLNVSVAGALIMYEAQRQR 154 >gi|332706614|ref|ZP_08426675.1| putative rRNA methylase, group 2 [Lyngbya majuscula 3L] gi|332354498|gb|EGJ33977.1| putative rRNA methylase, group 2 [Lyngbya majuscula 3L] Length = 153 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 1/146 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL + P N G I R+ A + + L ++ ++ + Sbjct: 4 VVLINPQIPPNTGNIARTCAATTTQLHLVGPLGFEISDRYLKRAGLDYWPYVDLKYHDSF 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + IG + + K L+ G E GL P E + + Sbjct: 64 DAFVSYHQKQEGRWIGFTKRGTYNYIKFQFQPKDWLLFGCETTGLPPHVLEACQAKVFIP 123 Query: 256 M-PGIIKALNVSNAAAVALYITQNHF 280 M +++LN+S +AA+ L+ + Sbjct: 124 MTQPGVRSLNLSVSAALGLFEARRQL 149 >gi|29833339|ref|NP_827973.1| rRNA methylase [Streptomyces avermitilis MA-4680] gi|29610462|dbj|BAC74508.1| putative rRNA methylase [Streptomyces avermitilis MA-4680] Length = 272 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 98/240 (40%), Gaps = 5/240 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 RDY + + + G + A + LL+ K D L Sbjct: 16 RDYTGLTDVELRRKREPAEGLFIAEGEKVIRRAKDAGYEMRSMLLSAKWVDVMRDVIDEL 75 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P PV V P+ +++ G LA L + + ++ +++++ VND NI Sbjct: 76 PA--PVYAVSPELAEQVTGYHVHRGALASMQRKPLPTADELLATARRVVIMESVNDHTNI 133 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RSA A D ++ + + K + GA+ +PY R+ L+ + GF Sbjct: 134 GAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDTWPKGLESVREAGF 193 Query: 208 QTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ D K E K D++AL+LGAEG GL + A + M + +LN Sbjct: 194 NLLALTPDEKAKTLDETAPHKMDRVALMLGAEGDGLSTQALVAADEWVRIPMAHGVDSLN 253 >gi|313886769|ref|ZP_07820476.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica PR426713P-I] gi|312923810|gb|EFR34612.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica PR426713P-I] Length = 262 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 44/254 (17%), Positives = 90/254 (35%), Gaps = 9/254 (3%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 H + K ++S ++H Q G + L P+ + L+ T+ + L Sbjct: 14 HAEVKLIKSLQL-TKHRKQSNLFIAEGEKLIGEML--PAYRCQLLVGTEELVKPLLGRCP 70 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 V P+ I+++ G ++ L + Q ++LD V DP N Sbjct: 71 ESIAEAVILPDPKQIERVSGLKSPRPLL---ALCEIPAVEAPQALQQPTLLLDDVQDPGN 127 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSW 205 +G +LR+ ++ T+ + + + ++ GAL + R ++ L + Sbjct: 128 VGTLLRTCDWMGIRQVLCTEGCADVYAPKVLQATMGALARVQVYRYTDRAALLTMLKKTE 187 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKAL 263 + + L+LG EG G+ + + P ++L Sbjct: 188 IPVIGTFIDGAPLRTLRLAPEQPYILVLGNEGNGISSDLSALVSQRITIPSPVDNHCESL 247 Query: 264 NVSNAAAVALYITQ 277 NV+ A A+ + Sbjct: 248 NVAVAGAIVMAHLM 261 >gi|304312834|ref|YP_003812432.1| hypothetical protein HDN1F_32140 [gamma proteobacterium HdN1] gi|301798567|emb|CBL46797.1| Hypothetical protein HDN1F_32140 [gamma proteobacterium HdN1] Length = 565 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 55/284 (19%), Positives = 101/284 (35%), Gaps = 18/284 (6%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 + EK + D + + K+ + +YGV+ A Sbjct: 285 PRKEKYQVWNKELPPSEAGANPDRSTL-KLSNKADPNERK----IYGVNASRAFFEQRPS 339 Query: 67 KIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET----- 118 I + T+ + + V + +++I + H+G+ L Sbjct: 340 DIIRAYFTEAVARQHFNELMKFLASEKLAYHLVTSEDMERIT-ESTHHEGVCLLVRDPGA 398 Query: 119 ---APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + T ++ L+ + +PHNIGAILR A F I+ + S + S Sbjct: 399 ESFFHWIETTPPPAEEPHCILALEDLGNPHNIGAILRVAAHFGVSSIVV-RDASLARSGA 457 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 ++A G EH+ + + + L GF + SS L ++ L++G Sbjct: 458 ALRTAEGGGEHVRLLEADDFSRMLAACRREGFTVVSTSSHEGTSLFAAPLPARVVLLIGQ 517 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E GL QE + + +++LNVS AA + L + Sbjct: 518 ESTGLSSSLQEGSDLKISIPGTKNVESLNVSVAAGILLAEYWRN 561 >gi|27364301|ref|NP_759829.1| tRNA guanosine-2'-O-methyltransferase [Vibrio vulnificus CMCP6] gi|27360419|gb|AAO09356.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus CMCP6] Length = 228 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A + + + SA Sbjct: 16 RQTDLTLCLEEVHKPNNVSAMIRTADATGLHKV-HAVWPTEQMKTLKNTSAGARNWVEVD 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S + SDS Q A+ILG+E G+ + + A Sbjct: 75 THDSIADAVSALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGSEKIGVSEQAKALAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A AV LY Q Sbjct: 135 QDIMIPMVGMVQSLNVSVACAVILYEAQRQR 165 >gi|256830639|ref|YP_003159367.1| tRNA guanosine-2'-O-methyltransferase [Desulfomicrobium baculatum DSM 4028] gi|256579815|gb|ACU90951.1| tRNA guanosine-2'-O-methyltransferase [Desulfomicrobium baculatum DSM 4028] Length = 201 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 60/151 (39%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +VL++++DPHN+ AILRS AF G+ S + S S Sbjct: 21 RQPDLTLVLNNIHDPHNVSAILRSCDAFGVFGVHLYYTKEKFPSLANSSSGSAKKWIDLT 80 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S + +P+ A+ILG E +G+ P + Sbjct: 81 RHREAGPMIQGLRGRGMQIVGTGFSPTARPIMDIDFTRPTAIILGNEHRGMDPDVKIHVP 140 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ M G++++LNVS AAA LY Sbjct: 141 DEIYIPMFGMVQSLNVSVAAATILYEAMRQR 171 >gi|149908558|ref|ZP_01897220.1| tRNA (guanosine-2'-O-)-methyltransferase [Moritella sp. PE36] gi|149808392|gb|EDM68329.1| tRNA (guanosine-2'-O-)-methyltransferase [Moritella sp. PE36] Length = 228 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 52/153 (33%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R L + ++ V+ PHN+ A++R+ A + + + Sbjct: 14 QHRQPDLTVCMESVHKPHNLAAVVRTCDAVGVNNV-HAVWSIRPTKVSGGTATGSQNWVK 72 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + + SD+ A+++G E G+ + Sbjct: 73 VHSHDNIAAAIKELKAQGMQVLATNLSDTAVDFRDIDYTKPTAILMGQEKTGISAEALAL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A A LY Q Sbjct: 133 ADQDIIIPMVGMVQSLNVSVATATILYEAQRQR 165 >gi|253568346|ref|ZP_04845757.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251842419|gb|EES70499.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 252 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 89/255 (34%), Gaps = 16/255 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S K + + + G L L AT + L Sbjct: 6 KIKYIHSLELK-KTRKEEQVFLAEGPKLTGDLL--GHFPCRFLAATSSWLQAHPDIQAN- 61 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + V + + + ++ Q LA+ P + + D VR S L + LD + DP N+G Sbjct: 62 ---EIAEVSQEELSRASLQKTPQQVLAVFEQPQYTLSPDFVRQS-LCLALDDIQDPGNLG 117 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + II ++ + ++ G + + S + Sbjct: 118 TIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHYTSLPEFIHSLGDAP--- 174 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264 + + + + ++ + +++G EG G+ + + ++ ++LN Sbjct: 175 -VFGTFLDGENMYEQPLSTNGLIVMGNEGNGIGKEVEALINRKLYIPNYPQGKETSESLN 233 Query: 265 VSNAAAVALYITQNH 279 V+ A AV + Sbjct: 234 VAIATAVICAEFRRQ 248 >gi|320157693|ref|YP_004190072.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus MO6-24/O] gi|319933005|gb|ADV87869.1| tRNA (guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus MO6-24/O] Length = 228 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A + + + SA Sbjct: 16 RQTDLTLCLEEVHKPNNVSAMIRTADATGLHKV-HAVWPTEQMKTLKNTSAGARNWVEVD 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S + SDS Q A+ILG+E G+ + + A Sbjct: 75 THDSIADAVSALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGSEKIGVSEQAKALAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A AV LY Q Sbjct: 135 QDIIIPMVGMVQSLNVSVACAVILYEAQRQR 165 >gi|269214336|ref|ZP_06158510.1| RNA methyltransferase, TrmH family [Neisseria lactamica ATCC 23970] gi|269210033|gb|EEZ76488.1| RNA methyltransferase, TrmH family [Neisseria lactamica ATCC 23970] Length = 178 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E + A + G EG G+ + A + M ++LNV+ AA + L+ Sbjct: 116 YNEDLREPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 175 Query: 281 A 281 A Sbjct: 176 A 176 >gi|15242287|ref|NP_197043.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] gi|7671508|emb|CAB89349.1| rRNA methylase-like protein [Arabidopsis thaliana] gi|110737570|dbj|BAF00727.1| rRNA methylase - like protein [Arabidopsis thaliana] gi|332004772|gb|AED92155.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] Length = 350 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 21/185 (11%), Positives = 52/185 (28%), Gaps = 6/185 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 V + ++ + + E ++ S L+V + + A Sbjct: 120 EVHLSSREVLEAVSPH------MMEERTDRFRRVVENRSYSVCLVVEGLSDFGNISAAFR 173 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 + + + S + S + Sbjct: 174 SADALGIQSVHVVSCDSSKRYNGNRHVSMGAEKWLDIEFWDTPKECFKVLKSRGYRIATT 233 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + A+++G EG+G+ + E + + M G++ + NVS AA + Sbjct: 234 HLGMDTVSIYDMDWSCPTAIVVGNEGRGISDEALELSDLRCSIPMNGMVDSFNVSVAAGI 293 Query: 272 ALYIT 276 ++ Sbjct: 294 LMHHA 298 >gi|59710710|ref|YP_203486.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri ES114] gi|59478811|gb|AAW84598.1| tRNA (Guanosine-2'-O-)-methyltransferase [Vibrio fischeri ES114] Length = 229 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ +N+ AI+R+A A I + + SA Sbjct: 16 RQTDLTLCLEEVHKANNVSAIVRTADATGIHKI-HAVWPTEQMQMLGHTSAGARNWVDVE 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + SD+ + A+ILG+E G+ K A Sbjct: 75 THKNIEDAFATLKEQGMQILATNLSDTAVDFREIDYTKPTAIILGSEKTGISKKALAMAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 165 >gi|323436083|ref|ZP_08088232.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|321496398|gb|EAQ38693.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 283 Score = 93.0 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 42/253 (16%), Positives = 88/253 (34%), Gaps = 16/253 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K++ S QK ++ + G+ V+ + + ++ + Sbjct: 43 TIKRITSLGQK-KYRQREGVFVAEGIKVVN---ELLLSSLELVELHTEDVSAFAKALSPQ 98 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V P + K+ + + A P A+ S L +VLD V DP N+G Sbjct: 99 DQSKVNETTPAELKKLTFLKTAQK----AVATFKMPEAIAIDRSGLTVVLDDVRDPGNLG 154 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R F ++ +K + + ++ G+L + I S + Sbjct: 155 TIIRLCDWFGIKQLVCSKATVDCYNPKVVQATMGSLTRVSIIYTDI-----DTYLSNEDR 209 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNV 265 + + + + + +++G E G+ +E T + G ++LNV Sbjct: 210 PVFGTFMDGENIYAASLPQEGVIVMGNEANGISTSIEELVTKRIAIPRFGITQATESLNV 269 Query: 266 SNAAAVALYITQN 278 + A A+ L + Sbjct: 270 ATATAICLSEFKR 282 >gi|261838205|gb|ACX97971.1| 23S rRNA methyltransferase [Helicobacter pylori 51] Length = 227 Score = 93.0 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG V LN+ K+ ++ +K + + L P + + K Sbjct: 4 VIYGKQVVMRILNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLAKVELPLAVSLKEIKKAQKLLVLCAITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + ++ T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|313159202|gb|EFR58575.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5] Length = 251 Score = 93.0 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 32/252 (12%), Positives = 78/252 (30%), Gaps = 18/252 (7%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 ++ R ++ G + L K+ ++ A + Sbjct: 7 QLVRALADKRGRTEHGLFVAEGEKLIGE-LRGSHLKVRKIFALEGVF----------AGP 55 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 V+TV P+ ++++ +L + LD V +P N+G I+ Sbjct: 56 EVETVAPRDMERLS-LLKTAANSLAIVETPRYGLDMRSLAGRLTLALDDVQNPGNLGTIV 114 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R A F I+ ++ + + + ++ GA+ + + Sbjct: 115 RLADWFGIADIVCSEASADCFNPKVVQATMGAILRVRVHYTDLGAFLHDAGAAGLPVYGT 174 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNVSN 267 + + ++ +++G EG+G+ T + ++LNV+ Sbjct: 175 FLE--GENIYGTTLTEEGVVVMGNEGRGISQAAARAVTHKLFIPPYPTDRRGSESLNVAM 232 Query: 268 AAAVALYITQNH 279 A + + Sbjct: 233 ATGIVCSEFRRR 244 >gi|159027148|emb|CAO86779.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 157 Score = 93.0 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 53/153 (34%), Gaps = 1/153 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + + L +VL + P N G I R+ A + + L ++ H+ Sbjct: 1 MTEAILRVVLINPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPHVK 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + D G + IG S + L+ G+E G+ Sbjct: 61 LMYHLTIDDFCAYQQKSGGRAIGFSVRGSSSYVEYSYQSGDWLLFGSETDGIPADLLNKC 120 Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNHF 280 ++ M +++LN+S + A+ L+ + Sbjct: 121 DDTVYIPMAEPGVRSLNLSVSVAIGLFEARRQL 153 >gi|152991818|ref|YP_001357539.1| RNA methyltransferase [Sulfurovum sp. NBC37-1] gi|151423679|dbj|BAF71182.1| RNA methyltransferase, TrmH family [Sulfurovum sp. NBC37-1] Length = 234 Score = 93.0 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 84/225 (37%), Gaps = 5/225 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG AL + + K + + + + K Sbjct: 8 IIYGKQVCLYALEKHPETVSTVYVAKKGILPQKLFHQFHDKIKFLE---EKWAQSMSKGG 64 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQGL LE + L P+L V+ L++LD + D NIGAI+RSA A D +I T Sbjct: 65 NHQGLLLEISELEQPSLSDVKREDFLVILDGLTDVGNIGAIVRSAYALGADAVIATG--V 122 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + S + + + ++ ++ K Sbjct: 123 KQLNFEAIARTSSGALLDMPFLLIPNILDVCNELHQVGFKLYGAAMEGDAVQLMEFERKR 182 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ALILG+EGKGL K Q + + M +LNVS AAA+ ++ Sbjct: 183 ALILGSEGKGLSKKAQGKIDHLISIEMKHAFDSLNVSAAAAILIH 227 >gi|145594669|ref|YP_001158966.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440] gi|145304006|gb|ABP54588.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440] Length = 299 Score = 93.0 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 92/281 (32%), Gaps = 27/281 (9%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 + ++ + +++ + + + GV ++ A+ + + L + Sbjct: 2 ARTIRVSTRNATFQQWHALLTNRTKRQRAGEFVVQGVRPITLAVEHGWQVRALLYPAGQS 61 Query: 78 LARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLL 135 L+R D + V P+ + ++ GK+ L + L+ Sbjct: 62 LSRWSRDLLDRISGASPVAVSPELLGELGGKDEEPPELLAVVGLPEDRLQRIPHSANMLV 121 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 M D P NIG+++RSA AF G++ T + ++ +G+L +P +R+ + Sbjct: 122 MAFDRPTTPGNIGSLIRSADAFGAAGVVITGHAADPYDPKSVRATTGSLFTVPVVRVPSH 181 Query: 196 -----TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + + +G + + +++G E +GL +++ Sbjct: 182 RAVLDWADSLRATRIPIEIVGTDEHGEVEITAHDLTGPTIIVVGNETRGLSTAWRQSCDR 241 Query: 251 MAHLHMPGI----------IKALNVSNAAAVALYITQNHFA 281 + + G V LY Sbjct: 242 TVRIPITGAASSLNAAAAAT----------VVLYEAARQRT 272 >gi|37678424|ref|NP_933033.1| tRNA guanosine-2'-O-methyltransferase [Vibrio vulnificus YJ016] gi|37197164|dbj|BAC93004.1| rRNA methylase [Vibrio vulnificus YJ016] Length = 228 Score = 93.0 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A + + + SA Sbjct: 16 RQTDLTLCLEEVHKPNNVSAMIRTADATGLHKV-HAVWPTEQMKTLKNTSAGARNWVEVD 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S + SDS Q A+ILG+E G+ + + A Sbjct: 75 THDSIADAVSALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGSEKIGVSEQAKALAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A AV LY Q Sbjct: 135 QDIIIPMVGMVQSLNVSVACAVILYEAQRQR 165 >gi|332159669|ref|YP_004296246.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318603765|emb|CBY25263.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Yersinia enterocolitica subsp. palearctica Y11] gi|325663899|gb|ADZ40543.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860934|emb|CBX71212.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica W22703] Length = 219 Score = 93.0 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 56/151 (37%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + L+ V+ PHN+ AI+R+A A I +P+ L+ +A Sbjct: 5 RQPDLTVCLEEVHKPHNVSAIIRTADAVGIHQI-HAIWPTPAMYTRLSSAAGSNSWVQVK 63 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 SD + +++G E G+ + A Sbjct: 64 THSHITDAITHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISKEALAMAD 123 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 124 KDIIIPMIGMVQSLNVSVASALILYEAQRQR 154 >gi|257146495|emb|CAX30784.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont of Conomelus anceps] gi|257146515|emb|CAX30799.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont of Delphacidae sp.] Length = 239 Score = 93.0 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R L + L++V+ PHNI A++R+A A I S ++ A +A Sbjct: 15 MRQPDLTVCLENVHKPHNISAVIRTADAVGIPQI-HAIWCKNSSKSLSAAAAGSNHWVKV 73 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 S + ++ Q N +ILG E G+ + A Sbjct: 74 RTHASIENAISTCKAAGMQILAAHLTNQAIDFRQIDYNQPTCIILGQERAGISKQALALA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 H+ M G++++LNVS A+A+ LY Q Sbjct: 134 DHNIHIPMMGMVQSLNVSVASALILYEAQRQR 165 >gi|238794541|ref|ZP_04638149.1| tRNA guanosine-2'-O-methyltransferase [Yersinia intermedia ATCC 29909] gi|238726121|gb|EEQ17667.1| tRNA guanosine-2'-O-methyltransferase [Yersinia intermedia ATCC 29909] Length = 230 Score = 93.0 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + L+ V+ PHN+ AI+R+A A + + L+ +A Sbjct: 10 CEMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQV-HAIWPTTQMYTRLSSAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 SD+ + +++G E G+ + Sbjct: 69 SWVQVKTHTHISDAIAHLKSQNMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITEE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|270607381|ref|ZP_06221632.1| rRNA methylase [Haemophilus influenzae HK1212] gi|270318140|gb|EFA29373.1| rRNA methylase [Haemophilus influenzae HK1212] Length = 105 Score = 93.0 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 39/75 (52%) Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + +G + ++ + + Q +AL++GAEG+G+R T+E + + M G + Sbjct: 31 QQNHNIWVVGTAGEATETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVS 90 Query: 262 ALNVSNAAAVALYIT 276 +LNVS A V L+ Sbjct: 91 SLNVSVATGVCLFEI 105 >gi|255015276|ref|ZP_05287402.1| putative tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7] Length = 255 Score = 93.0 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 89/257 (34%), Gaps = 18/257 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S K + ++ G V+ L P+ + L+A + + Sbjct: 6 KVKYIHSLELK-KFRNENNVFVAEGNKLVADML--PAFECELLIAKPSWM-------ATQ 55 Query: 89 HPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 P K V + + Q + + +L++ LD + DP N Sbjct: 56 GDIPAKELLVAEEDDIRKASFLKNPQDVLAIFKRPNWDITEITPEKELVLALDGIQDPGN 115 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G I+R A F I+ +K + S ++ GAL H+ + S Sbjct: 116 LGTIIRLADWFGISHIVCSKDTADVFSPKTVQATMGALAHVKIHYTDLE--TFLQAQSAQ 173 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKA 262 + + + L ++ + LI+G EG G+RP + ++ ++ Sbjct: 174 AIPLYGTFLGGENLYEKTLSGNGILIMGNEGNGIRPAIEAFVNEKLYIPNYPEGRDTSES 233 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ A AV + Sbjct: 234 LNVAIATAVVCAEFRRR 250 >gi|15677017|ref|NP_274169.1| RNA methyltransferase [Neisseria meningitidis MC58] gi|15677053|ref|NP_274205.1| RNA methyltransferase [Neisseria meningitidis MC58] gi|7226378|gb|AAF41528.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58] gi|7226416|gb|AAF41563.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58] Length = 203 Score = 93.0 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + A + G EG G+ + A + M ++LNV+ AA + L+ A Sbjct: 145 LCEPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRA 201 >gi|15645178|ref|NP_207348.1| hypothetical protein HP0553 [Helicobacter pylori 26695] gi|2313669|gb|AAD07619.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 227 Score = 93.0 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 85/224 (37%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + LN+ K+ ++ +K +L + L P + + K Sbjct: 4 VIYGKQVIMHLLNSHQEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ +L V+ +Q L+VL + D NIG I RSA ++ Sbjct: 62 NHQGVLAKVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGM--GGVILDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + + T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQIENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|119499892|ref|XP_001266703.1| RNA methyltransferase, TrmH family family [Neosartorya fischeri NRRL 181] gi|119414868|gb|EAW24806.1| RNA methyltransferase, TrmH family family [Neosartorya fischeri NRRL 181] Length = 484 Score = 93.0 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 67/370 (18%), Positives = 117/370 (31%), Gaps = 100/370 (27%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL---------------- 49 K ++ AK + HR K + ++SR + Sbjct: 102 SLPEPKRPRIQADERAKTIKEHR---KERDLQERSRLKRGEKRFTEGEPEQKKKHVLVPD 158 Query: 50 ----------FLYGVHTVSAALNNPSRKIFQLLATKNALARL------DWDANLPHPFPV 93 F+YG V AAL + R++++L + L L V Sbjct: 159 SVPYTTPASEFIYGTSAVEAALRSGRRQLYKLYIYQGDNEELGPTRSMLRKLALSKNIKV 218 Query: 94 K--TVPPQTIDKIVGKEAVHQGLALETAPLLS---------------------------- 123 K + + H G L+ +PL Sbjct: 219 KMAYAGWDRLFDQMSSGRPHNGCILDASPLPQLPVKSLCATPTLGADEFRVVLAPQSKEE 278 Query: 124 ------------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 L ++++LD + D N+G I+RSA D I+ R Sbjct: 279 ATVNSTNNRIPVRHLPGKSRYPVVLLLDGITDTGNLGGIIRSAYYLGIDAIVFAGRNCAP 338 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---- 227 S + K+++GA E++P I++SN D +Q+ + G+ + + D Sbjct: 339 LSPITIKASAGAAENMPLIKVSNEVDFIQQSKANGWHFFAADAPLPGSRYPDTTGDIDLT 398 Query: 228 -------KIALILGAEGKGLRPKTQETATSMAHLHMPGI------------IKALNVSNA 268 ++LG+EG GL + A S+ + + +LNVS A Sbjct: 399 RNAVTQAPSVIMLGSEGSGLSGHIKSHADSIVSIPGARNATEWGYEKDSARVDSLNVSVA 458 Query: 269 AAVALYITQN 278 AA+ + Sbjct: 459 AAILMEQFLR 468 >gi|94986333|ref|YP_605697.1| tRNA (guanosine-2'-O-)-methyltransferase [Deinococcus geothermalis DSM 11300] gi|94556614|gb|ABF46528.1| tRNA (guanosine-2'-O-)-methyltransferase [Deinococcus geothermalis DSM 11300] Length = 216 Score = 93.0 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 57/151 (37%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +++D VN PHN AILR+ A S A S S Sbjct: 16 RQPTLTVLMDEVNKPHNFSAILRTCDAVGVLTAHAVPPKSGVLPTFDATSGSAHKWVAVQ 75 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + +T Q + S + ++LGAE G+ + E A Sbjct: 76 RQPDAVTAVRQLQAAGMQVLATHLSQRSLDYREPDYTRPTCVLLGAEKWGVSDEAAEIAD 135 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G++++LNVS AAA L+ Q Sbjct: 136 ANIVIPMFGMVQSLNVSVAAATILFEAQRQR 166 >gi|239932361|ref|ZP_04689314.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672] gi|291440728|ref|ZP_06580118.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672] gi|291343623|gb|EFE70579.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672] Length = 272 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 64/239 (26%), Positives = 101/239 (42%), Gaps = 5/239 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + R G + A + LL+ K A D LP Sbjct: 17 DYTGLTDVELRRRREPAEGLFIAEGEKVIRRARDAGYTMRSMLLSAKWVDALRDVIDELP 76 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV TV P+ +++ G LA L T D +R ++ +++++ VND NIG Sbjct: 77 A--PVYTVTPELAERVTGYHVHRGALASMQRKPLPATADLLRTARRVVIMESVNDHTNIG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI RSA A D ++ + + K + GA+ +PY R+ L+ + GF Sbjct: 135 AIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDAWPKGLEAVREAGFT 194 Query: 209 TIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ D K E + D++AL+LGAEG GL + A + M + +LN Sbjct: 195 LLALTPDEKARSLDEAAPHRMDRVALMLGAEGDGLSTRALAAADEWVRIPMSHGVDSLN 253 >gi|218516180|ref|ZP_03513020.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli 8C-3] Length = 252 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 125/238 (52%), Positives = 163/238 (68%), Gaps = 14/238 (5%) Query: 14 SLKDSHYAKLRRNHRDYKKMQ----SFNQKSRHTSQPE---------NLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + + + R + ++LYG+HTV AA Sbjct: 16 SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRGAEDWKPPALAPDQVYLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP RK +L T+NALARL+ D P P + V P IDK++G EA+HQG+ LET P Sbjct: 76 LDNPERKKIKLSVTQNALARLEIDIE-PLGIPFEIVAPHEIDKVLGPEAIHQGVMLETRP 134 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+ES VLAKSA Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 SGALE IPYI+I+NL DAL ++H GF TIGL S+ PLE DK+AL+LG+EGK Sbjct: 195 SGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKLALVLGSEGK 252 >gi|157144486|ref|YP_001451805.1| putative methyltransferase [Citrobacter koseri ATCC BAA-895] gi|157081691|gb|ABV11369.1| hypothetical protein CKO_00203 [Citrobacter koseri ATCC BAA-895] Length = 348 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 90/244 (36%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 104 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 163 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L+ V +PHN+G ++RS Sbjct: 164 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVSQADAQDCVLALEDVANPHNLGGMMRSCA 222 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I ++ D L G+ + SSD Sbjct: 223 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDSIVDVLDDFRQAGYTIVTTSSD 281 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL K+ L+LG E + L +E + G ++ LNVS A V L Sbjct: 282 QGKPLFSTALPAKMVLVLGRELESLPEAAREPGDLCVKIDGTGNVENLNVSVATGVLLGE 341 Query: 276 TQNH 279 Sbjct: 342 WWRQ 345 >gi|172037390|ref|YP_001803891.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Cyanothece sp. ATCC 51142] gi|171698844|gb|ACB51825.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Cyanothece sp. ATCC 51142] Length = 219 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L ++ + V+ PHN+ AI+R+ A + + + S + Sbjct: 18 RQPDLTVLTEDVHKPHNLSAIIRTCDAVGILDVHSINTTDEFPTFSQVSQGSDKWIFLHT 77 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 K + L +D AL+LGAE G+ + Sbjct: 78 HPNIQTAINHLKSKKFKIYAAHL-TDKSVDYRDIDYTQPTALLLGAEKWGVSEEAASLVD 136 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS AAAV L+ Q Sbjct: 137 GHIIIPMLGMVQSLNVSVAAAVILFEAQRQR 167 >gi|262201234|ref|YP_003272442.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247] gi|262084581|gb|ACY20549.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247] Length = 284 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 91/258 (35%), Gaps = 10/258 (3%) Query: 30 YKKMQSFNQKSR------HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 ++ + S +++ + GV + + L LA LD Sbjct: 22 FRDLNSVDRRPDLPALPGGRPGKGLVIAEGVLVAQRMIASRFTP-HAFLGVDKRLAELDA 80 Query: 84 DANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 D P P + + +VG LA+ P + + + N++ + +L+ V Sbjct: 81 DLRTPSVSGVPFYRASAEVMAAVVGFHLNRGVLAVARRPPVRTVDEILANARSVAILEGV 140 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQ 200 ND NIG+I R+A D ++ + + + G +P+ R Sbjct: 141 NDHENIGSIFRNAAGLGIDAVLFGAGCADPLYRRCVRVSMGHALLVPFARFDEWPRGLDA 200 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + PL Q ++ K+ ++GAEG GL A + M Sbjct: 201 LRAGGFRLISLTPDPAAMPLAQAVEATKVGFLVGAEGPGLSAHAMAATDVRARIPMSRGT 260 Query: 261 KALNVSNAAAVALYITQN 278 +LNV+ AAA+A Y Sbjct: 261 DSLNVATAAAIAFYERAR 278 >gi|302037012|ref|YP_003797334.1| putative 23S rRNA methyltransferase RlmB [Candidatus Nitrospira defluvii] gi|300605076|emb|CBK41409.1| putative 23S rRNA methyltransferase RlmB [Candidatus Nitrospira defluvii] Length = 272 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 82/238 (34%), Gaps = 3/238 (1%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--- 88 ++ + R + L G + L + + I L+ T L R + Sbjct: 15 HIRDVVKTKRTRDRERVFVLEGTKPILELLQSAPQHIVCLVVTPMFLERQPPEIAQQIVS 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V + P + ++ E LA+ P + + + + D + DP N+G Sbjct: 75 SGCTVHSCPEHQLAQLSDVETSSGVLAIVHQPTWNQSAILAQPKIFGLYGDMLQDPTNMG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R+A + + + ++ +GAL +P ++L + Sbjct: 135 TIIRTAAGLDVSALWLAPHSVDVFNPKVVRATAGALFQLPIFPHTSLEELQNLDCVIIAA 194 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G S + L +G+E +GL + AT + + +++LN + Sbjct: 195 DAGTSEGCVPIRAIRSIPARTVLAIGSESRGLSEPVLDAATVRCTIPLKPGVESLNAA 252 >gi|153806377|ref|ZP_01959045.1| hypothetical protein BACCAC_00640 [Bacteroides caccae ATCC 43185] gi|149131054|gb|EDM22260.1| hypothetical protein BACCAC_00640 [Bacteroides caccae ATCC 43185] Length = 255 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 77/255 (30%), Gaps = 15/255 (5%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S K + + G V L L AT + + Sbjct: 8 KIKYIHSLELK-KIRKEERVFLAEGPKLVGDLL--GHFPCCFLAATASWIQEHPDL---- 60 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + V + + + Q + V L + LD V DP N+G Sbjct: 61 RINEIAEVSQEDLSR-ASLLKTPQQVLAVFEQPQYTLTPGVARHSLCLALDDVQDPGNLG 119 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + II ++ + ++ G + + S Sbjct: 120 TIVRLADWFGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHYTSLPDFIRSLGEDIPVF 179 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264 L+ + + ++ +++G EG G+ + + ++ ++LN Sbjct: 180 GTFLNGKN---MYEQPLTANGLIVMGNEGNGIGKEVETLINRKLYIPNYPQGKETSESLN 236 Query: 265 VSNAAAVALYITQNH 279 V+ A AV + Sbjct: 237 VAIATAVICAEFRRQ 251 >gi|315586762|gb|ADU41143.1| RNA methyltransferase [Helicobacter pylori 35A] Length = 227 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + LN+ K+ ++ +K +L + L P + + K Sbjct: 4 VIYGKQVIMHILNSHQEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ L V+ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLAKVELPLALPLKEVKKTQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + ++ T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|254527012|ref|ZP_05139064.1| tRNA guanosine-2'-O-methyltransferase [Prochlorococcus marinus str. MIT 9202] gi|221538436|gb|EEE40889.1| tRNA guanosine-2'-O-methyltransferase [Prochlorococcus marinus str. MIT 9202] Length = 223 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 1/153 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L ++++ VN PHN+ AILR+ A + + ++ S + Sbjct: 17 CRMKNLTVLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAVKTFNSTAQGSQKWVKLN 76 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + K + L+S+ + +LGAE GL + Sbjct: 77 NHENTITAISDLKNKGFKLYGTTLNSE-SVDYRNFDYSQNTCFVLGAEKWGLSNELISMV 135 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G++++LNVS AA++ L+ Sbjct: 136 DQSIFIPMRGMVQSLNVSVAASILLFEAVRQRK 168 >gi|308182709|ref|YP_003926836.1| RNA methyltransferase [Helicobacter pylori PeCan4] gi|308064894|gb|ADO06786.1| RNA methyltransferase [Helicobacter pylori PeCan4] Length = 227 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 87/224 (38%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG ++ LN+ K+ ++ +K + + L P + + K Sbjct: 4 VIYGKQVITHLLNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ L+ +L V+ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLARVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + + L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVVPNMLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|119775658|ref|YP_928398.1| putative methyltransferase [Shewanella amazonensis SB2B] gi|119768158|gb|ABM00729.1| putative tRNA/rRNA methyltransferase [Shewanella amazonensis SB2B] Length = 333 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 63/282 (22%), Positives = 115/282 (40%), Gaps = 13/282 (4%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65 ++E+ + + HR F+ K + ++ LYG++ S Sbjct: 55 SGRTERRDAYHHREAPRREPAHRATGAQAGFDGKDQRLNETR---LYGINACRETFKLRS 111 Query: 66 RKIFQLLATKNALARLDW--DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 ++ +L + + + V ++KI G + H G+ + Sbjct: 112 DEVIKLYLDEETAPKFADVMKYLARNRKAYHVVDADELEKIAGSQ-HHGGVVMVVRRKPV 170 Query: 124 PTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + + ++ L+ LD V +PHN+GAI+RS F GI+ T+ +S A Sbjct: 171 QDIAGYLAANTAKSRDCLLALDGVGNPHNLGAIMRSCAHFGVAGIVMTE-AGLLQSGAAA 229 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 ++A G +EH+ IR LTDALQ G+ I SS + L + ++ ++ G E Sbjct: 230 RTAEGGMEHVEGIRCDRLTDALQLCRDAGYSIITTSSHGGESLYRSKLPARVVVVFGEEM 289 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 G+ A + G++++LNVS AA++ L Sbjct: 290 DGVSKAVASRADIGVQIPGTGLVESLNVSVAASLILGEWYRQ 331 >gi|332300622|ref|YP_004442543.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica DSM 20707] gi|332177685|gb|AEE13375.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica DSM 20707] Length = 262 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 91/254 (35%), Gaps = 9/254 (3%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 H + K ++S ++H Q G + L P+ + L+ T+ + L Sbjct: 14 HAEVKLIKSLQL-AKHRKQSNLFIAEGEKLIGEML--PAYQCQLLVGTEELVKPLLGRCP 70 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 V P+ I+++ G ++ L + Q ++LD V DP N Sbjct: 71 ESIAEAVILPDPKQIERVSGLKSPRPLL---ALCEIPIIEAPQALQQPTLLLDDVQDPGN 127 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSW 205 +G +LR+ ++ T+ + S + ++ GAL + R ++ T L + Sbjct: 128 VGTLLRTCDWMGIRQVLCTEGCADVYSPKVLQATMGALARVQVYRYTDRTALLTMLTQTE 187 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKAL 263 + + L+LG EG G+ + + P ++L Sbjct: 188 IPVIGTFIDGAPLRTLRLAPEQPYILVLGNEGNGISSDLSALVSQRITIPSPVDSHCESL 247 Query: 264 NVSNAAAVALYITQ 277 NV+ A A+ + Sbjct: 248 NVAVAGAIVMAHLM 261 >gi|264679352|ref|YP_003279259.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2] gi|262209865|gb|ACY33963.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2] Length = 274 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 99/252 (39%), Gaps = 10/252 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ K+++ +Q S + ++L G H AAL + + A ++ + Sbjct: 23 SRDNAFVKELRRLSQDSTAYRKQGQVWLEGDHLCRAALVRGLKPKLAVFA-QSFWPQAPE 81 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + L V + D+I E+ + + V+ +VLD V D Sbjct: 82 EWVLAAG-KVVVLADALFDEISALESPARMG----YVMDWDAGVQVQPGVATVVLDRVQD 136 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G+ILRSA AF I+ K + S + ++ GA ++ ++ Sbjct: 137 AGNVGSILRSASAFGFTQIVALKGTAALWSQKVLRAGMGAHF----GLHLVEAASVDEVQ 192 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + SS + + A +G EG+G+ E A + PG ++L Sbjct: 193 GLQVPLVVTSSHQGTLIHEADLPWPCAWAMGHEGQGVGDALMEMARHRISIAQPGGEESL 252 Query: 264 NVSNAAAVALYI 275 NV+ AAA+ L+ Sbjct: 253 NVAAAAAICLHA 264 >gi|317013971|gb|ADU81407.1| RNA methyltransferase [Helicobacter pylori Gambia94/24] Length = 227 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + LN+ K+ ++ +K +L + L P + + K Sbjct: 4 VVYGKQVIMHILNSHHEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + + T L +S + + K Sbjct: 120 REFAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K + + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDMVLSVKMRRDFDSLNVSVAAGILM 223 >gi|281422707|ref|ZP_06253706.1| RNA methyltransferase, TrmH family [Prevotella copri DSM 18205] gi|281403186|gb|EFB33866.1| RNA methyltransferase, TrmH family [Prevotella copri DSM 18205] Length = 249 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 87/256 (33%), Gaps = 16/256 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S K ++ ++ G V L + A + Sbjct: 6 KIKYIHSLELK-KNRNKEGKFVAEGFKVVDDLLALQPADLIV------ATGEWLRGKHFG 58 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V V + + K+ + Q LA + ++ S+L + LD V DP N+G Sbjct: 59 AETEVIEVTDEELKKVSFLQHPQQVLA--VFKQATSGDYSINTSELSLALDGVQDPGNLG 116 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F I ++ + + + ++ G++ + L Sbjct: 117 TIIRIADWFGITHIYCSQDTADVYNPKVVQATMGSIARVKVEYGDLL---GLVESLPADV 173 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264 + + + Q+ ++ +++G EGKG+ P + + +LN Sbjct: 174 PVYGTLLDGDNIYQQKLENRGLIVMGNEGKGISPALAKKVNHKLLIPNFPEGRATADSLN 233 Query: 265 VSNAAAVALYITQNHF 280 V+ A A+ + +F Sbjct: 234 VAIATAITCSEFRRNF 249 >gi|294791506|ref|ZP_06756663.1| putative 23S rRNA methyltransferase [Scardovia inopinata F0304] gi|294457977|gb|EFG26331.1| putative 23S rRNA methyltransferase [Scardovia inopinata F0304] Length = 294 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 37/287 (12%), Positives = 84/287 (29%), Gaps = 38/287 (13%) Query: 26 NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALN--------------NPSRKIF 69 ++ +++ +S+ + + + G V A++ + Sbjct: 3 DNPHSDRVRRIADLSRSKTRKKTGRILVEGPQAVREAVHFASDFVTDLYYDAAAGEDPVL 62 Query: 70 ----------QLLATKNALARLDWDANLPHPFPVKTVPPQT---IDKIVGKEAVHQGLAL 116 L + ++ + + A LA Sbjct: 63 GKIISEAQKKILYCHPCSSQVMEAISKDCQGIGALVRTEAVTGGLAPDASSFAALASLAD 122 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 L + + DP N G I+R A A C +I + + Sbjct: 123 SVKSPGPVETAGHPARPLFLACWQLRDPGNAGTIIRVADAAGCPALILVDDCVDVTNPKV 182 Query: 177 AKSASGALEHIPYIRISNLTDAL---------QKMHSWGFQTIGLSSDSKKPLEQEIKND 227 +S +G+L H+P + +S ++G + + + Sbjct: 183 VRSTAGSLFHLPIVTLSTDDFFTEAARLGLPVCAADAYGTDQVEAIPLPDLMDSLKSSSQ 242 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ++ G E +GL S + + G ++LNV+ +A++ Y Sbjct: 243 PLCILFGNEARGLDDSLINRCQSAVRIPLYGRAESLNVAMSASIIAY 289 >gi|300787904|ref|YP_003768195.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32] gi|299797418|gb|ADJ47793.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32] Length = 217 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 81/199 (40%) Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 +A DA PV + + + + +A+ ++L+ Sbjct: 11 SAQHADLVDAARAAGVPVSPITDRAAEGLSETVTPQGIVAVCALLDRPLEEAVTPAARLV 70 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL V DP N G ++R A A D ++ + ++A+G+L H+P R+ ++ Sbjct: 71 VVLVDVADPGNAGTVIRVADAAGADAVVLAGDTVDPHNGKCVRAAAGSLFHLPIARVRDV 130 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 AL + G +T + L++ A + G E GL + A + Sbjct: 131 PAALAACSAAGLRTFAAHGYADAELDRVDLAVPTAWVFGNEAHGLPADVLDRADLAVRIP 190 Query: 256 MPGIIKALNVSNAAAVALY 274 M G ++LN++ AAAV +Y Sbjct: 191 MYGRAESLNLATAAAVCVY 209 >gi|78778803|ref|YP_396915.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9312] gi|78712302|gb|ABB49479.1| tRNA (guanosine-2'-O-)-methyltransferase [Prochlorococcus marinus str. MIT 9312] Length = 223 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 1/153 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L ++++ VN PHN+ AILR+ A + + ++ S + Sbjct: 17 CRMQNLTVLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAVKTFNSTAQGSQKWVKLN 76 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + K + L+S+ + +LGAE GL + Sbjct: 77 NHENTITAISDLKNKGFKLYGTTLNSE-SVDYRNFDYSQNTCFVLGAEKWGLSKEIISMV 135 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G++++LNVS AA++ L+ Sbjct: 136 DQSIFIPMRGMVQSLNVSVAASILLFEAIRQRK 168 >gi|308063657|gb|ADO05544.1| RNA methyltransferase [Helicobacter pylori Sat464] Length = 227 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 90/224 (40%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + LN+ K+ ++ +K +L + L P + + K Sbjct: 4 VIYGKQVIMHILNSHQEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ +L V+ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLAKVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + ++ T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|293402298|ref|ZP_06646436.1| RNA 2'-O ribose methyltransferase substrate binding subfamily [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304405|gb|EFE45656.1| RNA 2'-O ribose methyltransferase substrate binding subfamily [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 242 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 90/241 (37%), Gaps = 11/241 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDK 103 E + G +V AAL RK+ ++L K+ + V + ID Sbjct: 2 ETCIVEGNISVKAALLGKKRKVHKILVDAKKKDKDTAFILHKAKEAQVDIAYVKREEIDA 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + H G+ L+ + L +++ V DP N G +LR+ A CDG Sbjct: 62 LAT-GKTHGGIIAYCGQRKYQNLEELVNKKQVFLALIEGVEDPFNFGYVLRTLYAAGCDG 120 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ R + + V+ ++++GA E++ I ++ D L +H + L Sbjct: 121 VLVPLRNWTTAADVVTRASAGASEYMNIIIADDMEDTLTYLHQNDITLLCAQRKDAISLY 180 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN---VSNAAAVALYITQN 278 ++I L +G E +GL + ++ + N + + A+ + Sbjct: 181 SYTFPERICLAIGGEMRGLSKAVMTHSDQNLYIPYRSDFR--NAMTAAASTAIFAFEVVR 238 Query: 279 H 279 Sbjct: 239 Q 239 >gi|282896206|ref|ZP_06304229.1| RNA methyltransferase TrmH, group 2 [Raphidiopsis brookii D9] gi|281198895|gb|EFA73773.1| RNA methyltransferase TrmH, group 2 [Raphidiopsis brookii D9] Length = 153 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 1/147 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL + P N G I R+ A + + + L ++ H+ + Sbjct: 4 VVLINPQIPPNTGNIARTCAATATELHLVGPLGFEITDRYLKRAGLDYWPHVKLNYHESY 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 L+ G + +G S Q + L+ G+E G+ + S ++ Sbjct: 64 HTFLKVHQQRGGRLLGFSVRGNINYIQHEFHPDDWLLFGSETTGIPKNILDICDSTLYIP 123 Query: 256 M-PGIIKALNVSNAAAVALYITQNHFA 281 M +++LN+S + AVAL+ ++ Sbjct: 124 MDQPGVRSLNLSVSVAVALFESRRQLT 150 >gi|312868681|ref|ZP_07728874.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3] gi|311095795|gb|EFQ54046.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3] Length = 289 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 95/254 (37%), Gaps = 20/254 (7%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---------HPFPVKT 95 Q + AL + LL + L R D + P+ Sbjct: 33 QDGLFIAESPKVIERALRAGYQPA-SLLVEEKVLDRDLADLDHEMTMNQTEGLGQTPIYV 91 Query: 96 VPPQTIDKIVGKE----AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 + Q I ++ G A+ ++ L S + +L+ V +P NIGAI Sbjct: 92 INDQQIRQLAGYNLLRGALAAMYRVQRPNLASLFKSIPNPHPRIAILERVVNPANIGAIF 151 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL------QKMHSW 205 RSA A DG+I T + ++ + G + IP+ I T + + Sbjct: 152 RSAAALGIDGVIVTSDSADPLYRRSSRVSMGTVFQIPWTYIDAKTWHMEGIDLLHRFGYQ 211 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + + K DK+A+ILG+EG GL +T + + M + +LNV Sbjct: 212 TAAMALRHNTIRIDDPRLAKLDKLAIILGSEGPGLEEQTITQSDFTIKIPMAVGVDSLNV 271 Query: 266 SNAAAVALYITQNH 279 + A+A+A + N Sbjct: 272 AAASALAFWELGNR 285 >gi|258591300|emb|CBE67599.1| putative enzyme [NC10 bacterium 'Dutch sediment'] Length = 261 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 105/240 (43%), Gaps = 11/240 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIVG 106 L G H V AL R+I ++ + R+ P + + ++ Sbjct: 5 ILVGPHAVLEALRAKRRQIDRIYLARERYDSRIVEIVKRARELGVPCTQEKRERLGELS- 63 Query: 107 KEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K A HQG+ + + A LL++LD V DP N+GAI+R+A A Sbjct: 64 KGATHQGVLAVVSEADYEDPFELVARIKAATPLPLLLLLDGVQDPQNLGAIIRTAEAAGA 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 +G+ K + + +AK+++GA EH+ R++ L L + G T+G + + Sbjct: 124 NGLFIAKHRAAGITPAVAKASAGASEHLAVARVAGLPAFLAWLKDQGIWTLGADPSAVQS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L + + +++G E +GL ++ +A + G + +LN + AAAV L+ + Sbjct: 184 LYEIDLRAPMGVVIGGEHRGLTMLVRQRCDLLARIPTRGRVDSLNAAAAAAVFLFEIRRQ 243 >gi|207092282|ref|ZP_03240069.1| hypothetical protein HpylHP_04814 [Helicobacter pylori HPKX_438_AG0C1] Length = 227 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG V LN+ K+ ++ +K + + L P + + K Sbjct: 4 VIYGKQVVMHILNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLAKVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + ++ T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQAENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|255321809|ref|ZP_05362959.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter showae RM3277] gi|255300913|gb|EET80180.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter showae RM3277] Length = 226 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 5/224 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + N + + + K + + + P+K V Q + + Sbjct: 2 IIYGKQLFLHIIKNYKKSVKTVYLAKECD-KALFSQIVGVGAPIKRVDNQK-AQALAHGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG E ++D ++ + VL ++D NIGAI+R+A A C GI+ + Sbjct: 60 NHQGFLAEVEEFEFKSIDEIKKQNFIAVLYGLSDVGNIGAIVRTAHALGCGGIVVVAKN- 118 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + AS + I + +L I ++ K + + K+ Sbjct: 119 --LAMEGVLRASSGAAYEANIALVEDGLSLLNELKQVGFKIYATASGGKNAHEVKFDQKV 176 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL++G+EG+GL K + + + M +LNVS A A+ Sbjct: 177 ALVMGSEGEGLHKKVLAKSDEIVGIKMKNDWDSLNVSAAFAILC 220 >gi|117621457|ref|YP_854563.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562864|gb|ABK39812.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 253 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 47/175 (26%), Gaps = 1/175 (0%) Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 H T D + QL L V + A + + Sbjct: 1 MHTPHDIETDMTPERFKRITDMLAQRQLDLTVCMEEVHKPHNLAAIVRTADAIGIHRVHA 60 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + + + S SDS Sbjct: 61 VWPKTWIHKRKGTARGSQNWVDVKLHPDIGSAVAELKASGMQILATHLSDSSVDFRAIDY 120 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A+++G E G+ + A + M G++++LNVS AAA LY Q Sbjct: 121 TKPTAILVGQEKHGIGEEALALADHHIVIPMVGMVQSLNVSVAAAAILYEAQRQR 175 >gi|322390078|ref|ZP_08063613.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 903] gi|321143205|gb|EFX38648.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 903] Length = 181 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 2/179 (1%) Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 I ++ QG+ E A D ++ L + + V DP N+G ++R+A A Sbjct: 4 EILSLLADSKTPQGIVAEIALEQPVLPDQLQGRYLYL--EDVQDPGNVGTMIRTADAAGF 61 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 DG++ +K + S +S G+ HIP ++ + S S++ Sbjct: 62 DGVMLSKASADLYSLKTLRSMQGSHFHIPIWKLDREELLERATQSHLAVLATTLSEASID 121 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 Q + D+ L++G EG G+ + A + H+ MPG ++LNV+ AA + ++ + Sbjct: 122 YRQLPQTDRFILVMGNEGNGISQEMATQADQLVHIPMPGRAESLNVAVAAGILMFSLRK 180 >gi|317180325|dbj|BAJ58111.1| hypothetical protein HPF32_0529 [Helicobacter pylori F32] Length = 227 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG V LN+ K+ ++ +K + + L P + + K Sbjct: 4 VIYGKQVVMHILNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ L ++ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLAKVELPLALPLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + ++ T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|29346221|ref|NP_809724.1| putative tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|298385600|ref|ZP_06995158.1| RNA methyltransferase, TrmH family [Bacteroides sp. 1_1_14] gi|29338116|gb|AAO75918.1| putative tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|298261741|gb|EFI04607.1| RNA methyltransferase, TrmH family [Bacteroides sp. 1_1_14] Length = 252 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 36/255 (14%), Positives = 78/255 (30%), Gaps = 16/255 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S K + + + G L L AT + L Sbjct: 6 KIKYIHSLELK-KTRKEEQVFLAEGPKLTGDLL--GHFPCRFLAATSSWLQAHPDIQAN- 61 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + V + + + Q + L + LD + DP N+G Sbjct: 62 ---EIAEVSQEELSR-ASLLKTPQQVLAVFEQPQYTLSPDFARQSLCLALDDIQDPGNLG 117 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + II ++ + ++ G + + S + Sbjct: 118 TIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHYTSLPEFIHSLGDAP--- 174 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264 + + + + ++ + +++G EG G+ + + ++ ++LN Sbjct: 175 -VFGTFLDGENMYEQPLSTNGLIVMGNEGNGIGKEVEALINRKLYIPNYPQGKETSESLN 233 Query: 265 VSNAAAVALYITQNH 279 V+ A AV + Sbjct: 234 VAIATAVICAEFRRQ 248 >gi|296138340|ref|YP_003645583.1| RNA methyltransferase, TrmH family, group 3 [Tsukamurella paurometabola DSM 20162] gi|296026474|gb|ADG77244.1| RNA methyltransferase, TrmH family, group 3 [Tsukamurella paurometabola DSM 20162] Length = 324 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 114/257 (44%), Gaps = 11/257 (4%) Query: 34 QSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNA-LARLDWDANLPHP 90 + + + ++ ++ G + V L P+ ++ + +N Sbjct: 65 RRPQKVAGRAAEDGPEYVLGRNPVVECLRADVPATALYVAVGAQNDERLTESVRMAADKG 124 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVND 143 + V +D++ + +HQG+AL+ P + + +++ LD++ D Sbjct: 125 ISILEVQRAELDRMS-ENGLHQGIALQIPPYSYAHPEDLLRRAADRGEAPMIVALDNITD 183 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GA++RSA AF G++ R S + +AV ++++GA +P + NL L Sbjct: 184 PRNLGAVIRSAAAFGGHGVVIPSRRSAAITAVTWRTSAGAAARLPVAQAPNLNRTLADYA 243 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + G Q +GL + L+ + + +++G+EGKGL +E S+ + + +++L Sbjct: 244 AAGLQIVGLDAGGDVTLDDYRADTGVVVVVGSEGKGLSRLVRENCDSILSIPIASSVESL 303 Query: 264 NVSNAAAVALYITQNHF 280 N S AA V L Sbjct: 304 NASVAAGVVLADFARQR 320 >gi|37525241|ref|NP_928585.1| putative methyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784668|emb|CAE13568.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 338 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 56/313 (17%), Positives = 95/313 (30%), Gaps = 39/313 (12%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSR----------------------- 41 + + K S K + RR++ + N++ R Sbjct: 24 DSRNNNKRPSGKGRDQGQRRRDNERTSRSPRANERERSPWKTVSRPESDSVTPMHGGISG 83 Query: 42 ---------HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHP 90 + E +YG + A N S I + ++ R + Sbjct: 84 KSQIDPEQLRRQRMEETRIYGENACQAMFKNRSEAIVRAWFVESVTPRFRNALKWMAANR 143 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHN 146 V + K+ G E H G+ L ++ L+ V +PHN Sbjct: 144 KAYHVVDEAELTKVSGTE-HHGGVCFLIKKRNGLDAETYLKDAPVKDCVLALEDVGNPHN 202 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G I+RS F G+I A + + GA S +T + Sbjct: 203 LGGIMRSCAHFGVQGVILQDVALLESGAAIRTAEGGAEHIKGIDADSLVTTLNNFRKAGY 262 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 S L + +K+ L+LG E GL E + G++++LNVS Sbjct: 263 TIVTTSSHKGSTALAKAELPEKMVLVLGQERDGLSDSAWEHGDMSLFVGGSGLVESLNVS 322 Query: 267 NAAAVALYITQNH 279 A + L Sbjct: 323 VATGIMLAEWWRQ 335 >gi|282879810|ref|ZP_06288539.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS 5C-B1] gi|281306320|gb|EFA98351.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS 5C-B1] Length = 257 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 90/258 (34%), Gaps = 12/258 (4%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDA 85 K + S + + G V L+ P+ ++ + Sbjct: 5 AKLKYIHSL-KSKKGRVAQGTFIAEGPKVVGDLLSTFQPTMMFATPHWLQDIHNQESLTH 63 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 ++TV + KI ++ H L + L + QL++ LD + DP Sbjct: 64 LQQMGVQIETVTNDELTKISCQQ--HPQDVLCVFEMRKSHLAFDPSRQLILALDDIQDPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R A F+ I+ ++ + + + ++ G+L + + + Q + Sbjct: 122 NLGTIVRIADWFAIPTILCSENTADIYNPKVVQATMGSLARVNVVYLDLENYIRQHASEF 181 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIK 261 + + K + QE +++G EG G+ + ++ + Sbjct: 182 P---VYGTLLDGKDIYQENLGGHGLIVMGNEGNGISAAIRTFVNKPLYIPNFAKSANRAE 238 Query: 262 ALNVSNAAAVALYITQNH 279 +LNV+ A A+ + Sbjct: 239 SLNVAIATAITCSEFRRR 256 >gi|298530210|ref|ZP_07017612.1| tRNA guanosine-2'-O-methyltransferase [Desulfonatronospira thiodismutans ASO3-1] gi|298509584|gb|EFI33488.1| tRNA guanosine-2'-O-methyltransferase [Desulfonatronospira thiodismutans ASO3-1] Length = 197 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 59/153 (38%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R L +V+++++DPHN+ AILRS AF+ + P SAS Sbjct: 19 CRRQRDLTLVMNNIHDPHNVSAILRSCDAFAVPDVHLLYVGQPFPEVGRKSSASARKWVR 78 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + L + A+ILG E G++ ++ Sbjct: 79 RIRHRDAGEMVQRLEGQGLCLIRTGFGPQSISLPEWDFTRPTAVILGNEHSGVQEDLEQM 138 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ M G++++LNVS AAAV LY Sbjct: 139 VAQEIYIPMQGMVQSLNVSVAAAVILYEAFRQR 171 >gi|123968010|ref|YP_001008868.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. AS9601] gi|123198120|gb|ABM69761.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. AS9601] Length = 223 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 1/153 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L ++++ VN PHN+ AILR+ A + + ++ S + Sbjct: 17 CRMKNLTVLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAVKTFNSTAQGSQKWVKLN 76 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + K + L+S+ + +LGAE GL + Sbjct: 77 NHENTITAISDLKNKGFKLYGTTLNSE-SVDYRNFDYSQNTCFVLGAEKWGLSNELISMV 135 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G++++LNVS AA++ L+ Sbjct: 136 DQSIFIPMRGMVQSLNVSVAASILLFEAVRQRK 168 >gi|108801699|ref|YP_641896.1| RNA methyltransferase TrmH, group 3 [Mycobacterium sp. MCS] gi|119870850|ref|YP_940802.1| RNA methyltransferase [Mycobacterium sp. KMS] gi|123368666|sp|Q1B2P4|Y4736_MYCSS RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mmcs_4736 gi|254803958|sp|A1UMF4|Y4822_MYCSK RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mkms_4822 gi|108772118|gb|ABG10840.1| RNA methyltransferase TrmH, group 3 [Mycobacterium sp. MCS] gi|119696939|gb|ABL94012.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium sp. KMS] Length = 314 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 66/248 (26%), Positives = 113/248 (45%), Gaps = 11/248 (4%) Query: 43 TSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQ 99 E + G + V L P+ ++ + T+ + + + VP Sbjct: 66 RKTDETELVLGRNPVVECLRAEVPATALYVAMGTEADERVTEAVQIAADNGISILEVPRS 125 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152 +D++ A+HQGL L+ P D LL+ LD+++DP N+GAI+R Sbjct: 126 DLDRMS-NNALHQGLGLQVPPYDYAHPDDLLATAKADGAPALLVALDNISDPRNLGAIVR 184 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 S AF G++ +R S S +AV ++++GA +P R +NL L+ G Q +GL Sbjct: 185 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQVVGL 244 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 +D L++ + +++G+EGKGL +E ++ + M G ++LN S AA V Sbjct: 245 DADGDTTLDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVAAGVV 304 Query: 273 LYITQNHF 280 L Sbjct: 305 LAEIARQR 312 >gi|238755588|ref|ZP_04616925.1| tRNA guanosine-2'-O-methyltransferase [Yersinia ruckeri ATCC 29473] gi|238706188|gb|EEP98568.1| tRNA guanosine-2'-O-methyltransferase [Yersinia ruckeri ATCC 29473] Length = 230 Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + L+ V+ PHN+ A++R+A A I + +L+ +A Sbjct: 10 CEMLATRQPDLTVCLEQVHKPHNVSAVIRTADAVGIHQI-HAIWPTTEMYTLLSAAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 SD + +++G E G+ + Sbjct: 69 SWVQVKTHPDIGDAVQHFKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISKQ 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|90412684|ref|ZP_01220685.1| putative tRNA methyltransferase [Photobacterium profundum 3TCK] gi|90326259|gb|EAS42678.1| putative tRNA methyltransferase [Photobacterium profundum 3TCK] Length = 234 Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ P+N+ AI+R+A A + + + SA Sbjct: 16 RQPDLTVCMEEVHKPNNVSAIIRTADAVGVHKV-HAVWPKENMRVLSHTSAGARNWVELD 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + SD+ A+I G E G+ + A Sbjct: 75 THDNMVDAITHLKAQGMQVLATNLSDTAIDFRDVDYTKPTAIIFGGEKNGITAEALAMAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 165 >gi|302530010|ref|ZP_07282352.1| RNA methyltransferase TrmH [Streptomyces sp. AA4] gi|302438905|gb|EFL10721.1| RNA methyltransferase TrmH [Streptomyces sp. AA4] Length = 233 Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 7/229 (3%) Query: 58 SAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 AL +P ++ +++ A A PV+ + + G QG+ Sbjct: 2 LEALGDPDLRVDKVILADTARGPAAAEIQRAAKAAGVPVQRASAHRVKVLAGNGKQDQGV 61 Query: 115 ALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 + L D R +++LD + P N+G ILR+A A G+I +R Sbjct: 62 LADVVAPRMRALAAALDDRRPPARVLLLDGITTPANVGMILRTATAAGLSGVIVPRRGVA 121 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + ++ KS++G P +R + +A + + G+ L + + + + A Sbjct: 122 ALDPMVVKSSAGVAFRAPVLRCGSAREAAELLVEAGYSLFALGASATTSIFDAELPQRSA 181 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +LG E +G+ E T + MPG +++LNVS AAAV + Sbjct: 182 FVLGGETEGVGEAVAELVTEWLSIPMPGDVESLNVSAAAAVLSFELVRR 230 >gi|291294599|ref|YP_003505997.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus ruber DSM 1279] gi|290469558|gb|ADD26977.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus ruber DSM 1279] Length = 210 Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 33/69 (47%) Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 S+ Q ++LG E G+ P+ E A + + M G++++LNVS AAAV Sbjct: 110 HFSERAVDYRQADYTRPTCILLGTEKWGVSPEAAELADAHILIPMVGMVQSLNVSVAAAV 169 Query: 272 ALYITQNHF 280 L+ Q Sbjct: 170 ILFEAQRQR 178 >gi|254457298|ref|ZP_05070726.1| RNA methyltransferase, TrmH family, group 3 [Campylobacterales bacterium GD 1] gi|207086090|gb|EDZ63374.1| RNA methyltransferase, TrmH family, group 3 [Campylobacterales bacterium GD 1] Length = 226 Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 81/224 (36%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +Y V + N KI L K+ + + + F VK +P K+ K A Sbjct: 2 LIYAKQPVQYIIKNYPNKIRTLYLAKDVDKKEYSEL-MKMNFEVKRIPADAAGKMC-KNA 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ E ++ + ++VL + D NIGAI+R+A A + I+ Sbjct: 60 NHQGILAEVDDYELHPFNSFLDKDFVLVLSGLTDVGNIGAIVRTAYALGVEAIVACG--I 117 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + S + + + I + + K Sbjct: 118 KKLNFEPVMRTSTGALFDMPFALQHNIHDVMNDLKTSGFCIYGADMGGTDIRDVKIKQKR 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL+LG EG+GL + + + M +LNVS A A+ + Sbjct: 178 ALVLGNEGEGLTSRIVSKLDEVVSIQMSHDFDSLNVSVAGAILM 221 >gi|238750786|ref|ZP_04612284.1| tRNA guanosine-2'-O-methyltransferase [Yersinia rohdei ATCC 43380] gi|238710930|gb|EEQ03150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia rohdei ATCC 43380] Length = 230 Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + L+ V+ PHN+ AI+R+A A + + L+ +A Sbjct: 16 RQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQV-HAIWPTTEMYTRLSSAAGSNSWVQVK 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 SD + +++G E G+ + A Sbjct: 75 THAHITDAITYLKSQGMQILATHLSDKAVDFREIDYTLPTCILMGQEKTGISEEALALAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 KDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|300864366|ref|ZP_07109239.1| tRNA/rRNA methyltransferase (SpoU) [Oscillatoria sp. PCC 6506] gi|300337641|emb|CBN54385.1| tRNA/rRNA methyltransferase (SpoU) [Oscillatoria sp. PCC 6506] Length = 152 Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 2/146 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + + L ++ ++ NL Sbjct: 4 VVLISPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPYVNLHSHDNL 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 G + IG S+ + + + L+ GAE GL P+ E T + Sbjct: 64 EAFKACHQQRGGRWIGFSTKGQCSYTRFEFQNNDWLLFGAETTGLPPEILEACT-NVRIP 122 Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280 M +++LN+S + AV L+ Q Sbjct: 123 MSEPGVRSLNLSVSVAVGLFEAQRQL 148 >gi|315127020|ref|YP_004069023.1| RNA methyltransferase, TrmH family protein [Pseudoalteromonas sp. SM9913] gi|315015534|gb|ADT68872.1| RNA methyltransferase, TrmH family protein [Pseudoalteromonas sp. SM9913] Length = 243 Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 89/249 (35%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K ++ QK ++ Q + G V LN+P K+ + AT+N + H Sbjct: 8 KLIRQLGQK-KYRKQLNQYLVQGEKNVLELLNSP-LKVTDVFATQNFIDNNQSAYPQTHF 65 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + +V A A + P+ + L++ LD V+DP N+G I Sbjct: 66 ITADEEQLTKVSTLVSNNA-------AIAIVDMPSTTLPDENSLILALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + I+ + + + + G+ + ++ + + Sbjct: 119 IRVADWYGIKHIVASTDSADPYNPKTISATMGSFVRVSVSQVDLPSYLTSLDVPIYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + K L++G+E G+R + T+ + G ++LNV+ A Sbjct: 179 EGENVHHCQ-----FAGKGVLLMGSESHGIRQQCAALVTNKITIPAFGGAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNFKRQ 242 >gi|308061885|gb|ADO03773.1| RNA methyltransferase [Helicobacter pylori Cuz20] Length = 227 Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + LN+ K+ ++ +K + + L P + + K Sbjct: 4 VIYGKQVIMHILNSRPEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ L V+ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLAKVELPLAVPLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + ++ T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|254719617|ref|ZP_05181428.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. 83/13] gi|265984627|ref|ZP_06097362.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13] gi|264663219|gb|EEZ33480.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13] Length = 276 Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 65/280 (23%), Positives = 118/280 (42%), Gaps = 18/280 (6%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + +F + D+ +L +RD ++ ++ R G V Sbjct: 1 MQDIDTRSHDCVFVIDDADDIRLAP-YRDIREKDLVGRQQR-------FIAEG-KVVLNV 51 Query: 61 L--NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L ++ + LL +N L L LP PV +VP +D + G VH+G+ Sbjct: 52 LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110 Query: 118 TAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 P L + L++VL +++ N+G+I R+A AF D ++ + Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + + GA +PY + D + GF + L+ + + + + ++ AL+L Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 G EG+GL + E A + M +LNV+ A+ +AL Sbjct: 231 GTEGEGLPSRLLERL-KTARIPMSTTFDSLNVATASGIAL 269 >gi|149197587|ref|ZP_01874637.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155] gi|149139157|gb|EDM27560.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155] Length = 248 Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 45/254 (17%), Positives = 86/254 (33%), Gaps = 14/254 (5%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 R K+ + + G AL + I + + D Sbjct: 7 RKIKQEFIKLKTRGGRRKSNYFLCEGKRCCDEALKYAANSIECCVVAQEKADLDFLDMK- 65 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + + + ++ E L ++VLD V +P N+ Sbjct: 66 ------FVLSEKEMSELSLTENPQGIL--MLMKKPDKVECPSSLKPFVLVLDGVAEPGNM 117 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ILR+A+A + +I T +A ++ GA + +I + +L Q F Sbjct: 118 GTILRTALAVGLERVILTSGTVDPYNAKAVRAGMGAQFRLEFIYVESLESLSQDFPEAKF 177 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 +D + + L+ G EG G++ + + MPG ++LNV+ Sbjct: 178 WLTSPRADISLYNKGFDLSGSF-LVFGEEGDGIKDF---SVGERVTIPMPGDTESLNVAQ 233 Query: 268 AAAVALYI-TQNHF 280 AA + L+ + + Sbjct: 234 AATLFLFEGVRRNL 247 >gi|332518956|ref|ZP_08395423.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] gi|332044804|gb|EGI80997.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] Length = 240 Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 37/254 (14%), Positives = 86/254 (33%), Gaps = 23/254 (9%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + QK ++ GV ++ LN+ + L T+ + Sbjct: 6 QIKLITRLKQK-KYRVAEGFFVAEGVKVINELLNSTLE-LHHLFTTETFKINNNETL--- 60 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + + I + A P + + L++ LD V DP N+G Sbjct: 61 ----ITQAELKKISFLT-------TPNKALAVFKIPEAVKIDTNGLIVALDDVRDPGNLG 109 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R + ++ + + + ++ G++ + ++ Q + Sbjct: 110 TIIRLCDWYGITNLVCSIGTVDCYNPKVIQATMGSITRVNISYLNLSYFLKQNNKTPIL- 168 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNV 265 + + + + + L++G E G+ +E T+ + G ++LNV Sbjct: 169 ---GAFMDGENVYKTKLPNSGILVMGNEANGVSKTIEEQVTNRIAIPRFGTLQATESLNV 225 Query: 266 SNAAAVALYITQNH 279 + A A+ L + + Sbjct: 226 ATATAILLSEFKRN 239 >gi|87303673|ref|ZP_01086448.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701] gi|87281778|gb|EAQ73743.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701] Length = 161 Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 6/151 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G + R+ A + + + L ++ +P Sbjct: 7 VVLFQPQIPPNTGNVARTCAATGAELHLIEPLGFSLDERQLKRAGLDYWPWVPLHVHPGF 66 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + G + + LSS + +P + L+ G E GL P+ E A + Sbjct: 67 EALSAEQRRRGGRLLALSSQADQPYQHCRFCSDDWLLFGRESDGLPPELLEQADMRLTIP 126 Query: 256 MP------GIIKALNVSNAAAVALYITQNHF 280 MP G +++LN+S + AV L+ Sbjct: 127 MPGSVRHGGGVRSLNLSVSVAVVLFEALRQL 157 >gi|315655485|ref|ZP_07908384.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333] gi|315490140|gb|EFU79766.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333] Length = 283 Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 98/266 (36%), Gaps = 14/266 (5%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY +++ N + ++ + AL LLA + A P Sbjct: 17 DYTQLKDVNLRRSLEAEQGLFMAESNEVIGRALRAGFTPRSLLLAPHWLEIIRPFLAASP 76 Query: 89 H--------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 P PV ++++VG +A + ++++ +++L+ Sbjct: 77 ATGFAPDGGPIPVFVASEDLLERLVGFHLHRGAIAAMLRKPAPDPREILKHASRVLILED 136 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + D N+GA +RSA A D I+ T + + + G + +P+ R+ D Sbjct: 137 LVDHTNVGAAVRSAAACGYDAIMVTPSCADPLYRRAVRVSMGTIFQVPWTRLERWPDPAL 196 Query: 201 KMHSWGF------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + K+ALI GAE GL+P+T A + + Sbjct: 197 FHEAGFELAALALREDSQDLRDYATELAGDPTRKVALIAGAERDGLKPQTIARADKVVRI 256 Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280 M + +LNV+ A A+A + T + Sbjct: 257 AMAHGVDSLNVAGAIAIACWATAANR 282 >gi|321309539|ref|YP_004191868.1| RNA methyltransferase TrmH [Mycoplasma haemofelis str. Langford 1] gi|319801383|emb|CBY92029.1| RNA methyltransferase TrmH group 3 [Mycoplasma haemofelis str. Langford 1] Length = 244 Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 90/242 (37%), Gaps = 9/242 (3%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 E L L G + +NNP + + D + + K Sbjct: 2 SEFLILKGRKGIQDLINNPKLRHLIEEVHLSKTQIQIIDLCNKNGVKYQIKEKSYFWKF- 60 Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSC 159 + ++ LD++ L+++LDH+ DP N+GAILR+ AF Sbjct: 61 ETKKKYKYAVAFIRKKKDLDLDSLIRICSSRERSLILILDHLQDPFNVGAILRTCCAFEV 120 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSK 217 DG+I K S + + +S + + + + + Sbjct: 121 DGVILPKDKSAPLNHEVTLKSSQGYSLNINTVEVSNLNNAITKLKNRGYWVYSTEIGPNT 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K ++ DK ALI+G+EGKG+ ++ + H+ M + +LNVS AA + + Sbjct: 181 KSFKEVEYADKCALIMGSEGKGVSKILRDNSDVKVHIPMKNNVNSLNVSVAAGIIISEIS 240 Query: 278 NH 279 + Sbjct: 241 DQ 242 >gi|271968868|ref|YP_003343064.1| tRNA/rRNA methyltransferase SpoU [Streptosporangium roseum DSM 43021] gi|270512043|gb|ACZ90321.1| tRNA/rRNA methyltransferase (SpoU) [Streptosporangium roseum DSM 43021] Length = 292 Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 101/273 (36%), Gaps = 23/273 (8%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY ++ + ++ G + A+ + +L T+ L + Sbjct: 10 ADYANLRDVELRKSMEAEHGLFIAEGEKVIRRAVAAGY-PVRSVLLTRRWADPLADLLDG 68 Query: 88 P------------HPFPVKTVPPQTIDKIVGKEAVHQGLA----LETAPLLSPTLDAVRN 131 V + + +E VR Sbjct: 69 LGDRVYVVDDDVMEGIAGFPVHRGALAAMERRELPPVDEVLRGASHATAGAVDEGGPVRP 128 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + L+VL+ + D N+GAI R A A DGII + R + K + GA+ IPY R Sbjct: 129 PRRLLVLEDLVDHGNVGAIFRCAAALGVDGIILSPRCADPLYRRSVKVSMGAVFAIPYAR 188 Query: 192 ISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + N D L+++ + GFQT+ P++ +++AL+LG+EG GL + A Sbjct: 189 MGNWYDGLEEIRAAGFQTLALTPDQDATPMDTVEMRERVALLLGSEGDGLSSRWLREADE 248 Query: 251 MAHLHMPG-----IIKALNVSNAAAVALYITQN 278 + M + +LNV AAA+A + Sbjct: 249 QVCIPMSPTAMASGVDSLNVVAAAAIACHGLMR 281 >gi|183598085|ref|ZP_02959578.1| hypothetical protein PROSTU_01448 [Providencia stuartii ATCC 25827] gi|188020242|gb|EDU58282.1| hypothetical protein PROSTU_01448 [Providencia stuartii ATCC 25827] Length = 347 Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 80/255 (31%), Gaps = 9/255 (3%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LP 88 K Q + + +YG + A N I + ++ R Sbjct: 92 KSQIDPEQLRKQRLEETR--IYGENACQAMFKNRPEAIVRAWFLQSVTPRFRDALKWMAA 149 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLDHVNDP 144 + V + + K G E H G+ + L + ++ L+ V +P Sbjct: 150 NRKAYHVVDDEELTKASGTE-HHGGVCFLIKKRGGMSVETYLQQAPATDCVLALEDVGNP 208 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+G I+RS F G+I A + + GA Q + Sbjct: 209 HNLGGIMRSCAHFGVQGVILQDAGVVESGAAIRTAEGGAEHIKAIDADGLSNTLSQFRQA 268 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 S + + + K+ L+LG E GL ++ G +++LN Sbjct: 269 GYTIVTTSSHKGSQDISKAKLPAKMVLVLGQERDGLSDSVWNEGDMSLYIGGTGKVESLN 328 Query: 265 VSNAAAVALYITQNH 279 VS A + L Sbjct: 329 VSVATGIMLAQWWQQ 343 >gi|254584204|ref|XP_002497670.1| ZYRO0F10868p [Zygosaccharomyces rouxii] gi|6523570|emb|CAB62290.1| hypothetical protein [Zygosaccharomyces rouxii] gi|238940563|emb|CAR28737.1| ZYRO0F10868p [Zygosaccharomyces rouxii] Length = 415 Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 59/322 (18%), Positives = 113/322 (35%), Gaps = 61/322 (18%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQ-----SFNQKSRH---TSQPENLFLYGVHTVSAALNNP 64 F + +H +L+ N R ++ + F +K+ P ++YG ++V AAL Sbjct: 85 FGKRKAHELRLKENQRRMEQERTTHVHKFEKKNATQGLRPNPLMEYVYGTNSVLAALQGN 144 Query: 65 SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL---------- 114 R+ + L L + ++ + + + Sbjct: 145 KREYYSRLLHYGQLDPRLQKLAKSRNVELVETDKHRLNLMTNYAVHNNIILETKPLQPPE 204 Query: 115 ----------------------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 + + + +N L + LD V DPHNIGAI+R Sbjct: 205 ISHLQMVNPESGTIQYSELAFEDEKITQEMPYGVKNGKNFPLGIYLDEVVDPHNIGAIMR 264 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA D I+ +++ SA ++K++SGA+E +P + + G T Sbjct: 265 SAYFLGADFIVMSRKNCAPLSAAVSKTSSGAIELLPIFYVDKPLSFFSESQQGGGWTFVT 324 Query: 213 SSDSKKPLEQEIKND----------------KIALILGAEGKGLRPKTQETATSMAHLHM 256 + + + + N + L++G EG G+R + + + Sbjct: 325 AGLTDFTQKDKKFNSGKILELNDLEGLCEQVPVVLVVGNEGSGVRTNLKMRSDFFVEIPF 384 Query: 257 -----PGIIKALNVSNAAAVAL 273 G + +LNVS A A+ + Sbjct: 385 GRDDEKGPVDSLNVSVATALLI 406 >gi|172035635|ref|YP_001802136.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142] gi|171697089|gb|ACB50070.1| probable tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142] Length = 153 Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 55/146 (37%), Gaps = 1/146 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL + P N G I R+ A + + + L ++ H+ +L Sbjct: 4 VVLVNPQIPPNTGNIARTCAATNTELHLVGPLGFELSDRYLKRAGLDYWPHVKLQYHLDL 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + +G S K + L+ G+E +GL P Q+ M ++ Sbjct: 64 EQFQAYHQQQKGRLLGFSVRGKSCYGDCQFKEDDWLVFGSETEGLPPTFQDQCDQMLYIP 123 Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280 MP +++LN+S + A+ L+ Sbjct: 124 MPHPEVRSLNLSVSVAIGLFEALRQL 149 >gi|109698962|gb|ABG38882.1| tRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas atlantica T6c] Length = 256 Score = 92.2 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 55/155 (35%), Gaps = 2/155 (1%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L + R L + L+ V+ PHN+ A+LRS A + I + + Sbjct: 18 LLSTRQPSLTVCLEQVHKPHNVSAVLRSCDAVGINRIHGV--WDQKTKIRKGTAMGSEHW 75 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + S + SD A+ILG E G + Sbjct: 76 VKTEMHTSIGDAVSVLKQQNMQVLVTHLSDDSVDFRDIDYTQPTAIILGQEKHGATEEAI 135 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS AAAV LY Q Sbjct: 136 AVADKNIVIPMVGMVQSLNVSVAAAVVLYEAQRQR 170 >gi|282901434|ref|ZP_06309359.1| RNA methyltransferase TrmH, group 2 [Cylindrospermopsis raciborskii CS-505] gi|281193713|gb|EFA68685.1| RNA methyltransferase TrmH, group 2 [Cylindrospermopsis raciborskii CS-505] Length = 153 Score = 92.2 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 1/146 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL + P N G I R+ A + + + L ++ H+ + Sbjct: 4 VVLINPQIPPNTGNIARTCAATATELHLVGPLGFEITDRYLKRAGLDYWPHVKLNYHESY 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 L+ G + +G S Q L+ G+E G+ + S ++ Sbjct: 64 HTFLKVHQQRGGRLLGFSVRGNIDYIQYEFRPDDWLLFGSETTGIPENILDICDSTLYIP 123 Query: 256 M-PGIIKALNVSNAAAVALYITQNHF 280 M +++LN+S + AVAL+ ++ Sbjct: 124 MDQPGVRSLNLSVSVAVALFESRRQL 149 >gi|126695780|ref|YP_001090666.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9301] gi|126542823|gb|ABO17065.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9301] Length = 223 Score = 92.2 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 1/153 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L ++++ VN PHN+ AILR+ A + + ++ S + Sbjct: 17 CRMKNLTVLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAVKTFNSTAQGSQKWVKLN 76 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + K + L+S+ + +LGAE GL + + Sbjct: 77 NHENTITAISDLKNKGFKLYGTTLNSE-SVDYRNFDYSQNTCFVLGAEKWGLSNELKSMV 135 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G++++LNVS AA++ L+ Sbjct: 136 DQSIFIPMRGMVQSLNVSVAASILLFEAVRQRK 168 >gi|157412835|ref|YP_001483701.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9215] gi|157387410|gb|ABV50115.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9215] Length = 223 Score = 92.2 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 1/153 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L ++++ VN PHN+ AILR+ A + + ++ S + Sbjct: 17 CRMKNLTVLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAVKTFNSTAQGSQKWVKLN 76 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + K + L+S + +LGAE GL + Sbjct: 77 NHENTIKAISDLKNKGFKLYGTTLNSK-SVDYRNFDYSQNTCFVLGAEKWGLSNELISMV 135 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G++++LNVS AA++ L+ Sbjct: 136 DQSIFIPMRGMVQSLNVSVAASILLFEAVRQRK 168 >gi|228912831|ref|ZP_04076478.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925345|ref|ZP_04088441.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931594|ref|ZP_04094500.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228943898|ref|ZP_04106283.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228983347|ref|ZP_04143560.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229089223|ref|ZP_04220504.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42] gi|229119754|ref|ZP_04249015.1| tRNA/rRNA methyltransferase [Bacillus cereus 95/8201] gi|229153870|ref|ZP_04282000.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342] gi|229182486|ref|ZP_04309737.1| tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1] gi|228600941|gb|EEK58510.1| tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1] gi|228629551|gb|EEK86248.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342] gi|228663655|gb|EEL19234.1| tRNA/rRNA methyltransferase [Bacillus cereus 95/8201] gi|228694062|gb|EEL47744.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42] gi|228776337|gb|EEM24690.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228815731|gb|EEM61967.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828022|gb|EEM73750.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834267|gb|EEM79808.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846767|gb|EEM91772.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 175 Score = 92.2 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 47/156 (30%), Positives = 81/156 (51%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + ++LD + DPHN+G+I+R+A A GII KR + +A +AK+++GA+E+ Sbjct: 17 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 76 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 IP R++NL+ + ++ G G + K I L++G+EGKG+ E Sbjct: 77 IPVARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGE 136 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + L M G + +LN S AA++ +Y + Sbjct: 137 KCDFLITLPMVGKVTSLNASVAASLLMYEVYRKRNE 172 >gi|260770799|ref|ZP_05879728.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio furnissii CIP 102972] gi|260614036|gb|EEX39226.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio furnissii CIP 102972] Length = 228 Score = 92.2 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A I + + SA Sbjct: 16 RQTDLTVCLEEVHKPNNVSAVIRTADAVGLHKI-HAVWPNEQMRTLTHTSAGARNWVEVE 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S L + SD A+I+G+E G+ + A Sbjct: 75 THNSTLDAIKTLKAQGMQVLVTNLSDDAVDFRDIDYTQPTAIIVGSEKVGISKQALALAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 QDIVIPMVGMVQSLNVSVASALILYEAQRQR 165 >gi|223038607|ref|ZP_03608900.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter rectus RM3267] gi|222880009|gb|EEF15097.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter rectus RM3267] Length = 226 Score = 92.2 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 5/224 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + N + + + K + + + P+K V Q + + Sbjct: 2 IIYGKQLFLHIIKNYKKSVKTVYLAKECD-KALFSQIVGVGAPIKRVDNQK-AQALAHGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG E +LD ++ + +L ++D NIGAI+R+A A C G++ + Sbjct: 60 NHQGFLAEVEEFEFKSLDEIKKQNFIAILYGLSDVGNIGAIVRTAHALGCGGVVIVAKN- 118 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + AS + I + +L I ++ K + + K+ Sbjct: 119 --LAMEGVLRASSGAAYETDIALVEDGLSLLNELKQVGFKIYATASGGKNAHEVKFDRKV 176 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL++G+EG+GL K + + + M +LNVS A A+ Sbjct: 177 ALVMGSEGEGLHKKVLTKSDEIVGIKMKNDWDSLNVSAAFAILC 220 >gi|126656950|ref|ZP_01728128.1| rRNA methylase SpoU [Cyanothece sp. CCY0110] gi|126621788|gb|EAZ92497.1| rRNA methylase SpoU [Cyanothece sp. CCY0110] Length = 220 Score = 92.2 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L ++ + V+ PHN+ AI+R+ A + + S + Sbjct: 18 RQPDLTILTEDVHKPHNLSAIIRTCDAVGILDVHCINTTDEFPTFSQVSQGSDKWVFLHS 77 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 K ++ + S + A++LGAE G+ + Sbjct: 78 HPNIKTGINHLKRQNFNIYAAHFTDQSLDYR-EIDYTQPTAILLGAEKWGVSEEAANLVD 136 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS AAAV L+ Q Sbjct: 137 GHIIVPMLGMVQSLNVSVAAAVILFEAQRQR 167 >gi|332304823|ref|YP_004432674.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172152|gb|AEE21406.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 250 Score = 92.2 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 2/155 (1%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L + R L + L+ V+ PHN+ AILRS A + I A + ++ Sbjct: 12 LLSTRQPSLTVCLEQVHKPHNVSAILRSCDAVGINRIHGVWDQKTKLRKGTAMGSEHWVK 71 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + I + + SD + A+ILG E G + Sbjct: 72 TEMHSSIDDA--VGVLKQQNMQVLVTHLSDDSVDFREIDYTQPTAIILGQERHGATEEAI 129 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS AAA+ LY Q Sbjct: 130 ALADKNIVIPMVGMVQSLNVSVAAALVLYEAQRQR 164 >gi|237741818|ref|ZP_04572299.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13] gi|229429466|gb|EEO39678.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13] Length = 258 Score = 92.2 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 89/277 (32%), Gaps = 27/277 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K+++ I SLK K + G Sbjct: 3 MEIIESKENKLIKSLKKLKQKK-------------------YRDSENKFLAEGYK----F 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+ ++ + ++ V + +++ +E Sbjct: 40 LDYNYFPETIIIREDIFQSNFYFEKINKFTCKKIVVIRKVFEELSSQENSQG----IIIL 95 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 T D S L++LD V+DP N+G I+R A + II TK + + + ++ Sbjct: 96 YNKKTNDLKSLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRAT 155 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ ++ + + + + +K A+I G EG G+ Sbjct: 156 MGSILNVNLYYLEKSEIINFLKENNYSIISTYLDKAAISYNKIKLKEKNAIIFGNEGNGI 215 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + ++LNV+ A + LY + Sbjct: 216 SDDFINITNYKTIIPILSNTESLNVAVATGIILYKFR 252 >gi|218510308|ref|ZP_03508186.1| rRNA methylase protein [Rhizobium etli Brasil 5] Length = 218 Score = 92.2 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 74/193 (38%) Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V V + I I ++ + + R + + LD V DP N+ Sbjct: 20 ASGGLVLEVSEKVIGSITRRDNPQMVVGIFDQRWKPLKDIRPREGETWVALDRVRDPGNL 79 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A G+I + S ++ G++ +P R + + + Sbjct: 80 GTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVARATPEEFLAWRKSAGVS 139 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + + + L++G E GL + + A ++A + G +LN++ Sbjct: 140 VVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQLAKEADALARIPQQGRADSLNLAV 199 Query: 268 AAAVALYITQNHF 280 A AV L+ + H Sbjct: 200 ATAVMLFEARRHL 212 >gi|162382313|ref|YP_659936.2| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas atlantica T6c] Length = 250 Score = 92.2 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 55/155 (35%), Gaps = 2/155 (1%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L + R L + L+ V+ PHN+ A+LRS A + I + + Sbjct: 12 LLSTRQPSLTVCLEQVHKPHNVSAVLRSCDAVGINRIHGV--WDQKTKIRKGTAMGSEHW 69 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + S + SD A+ILG E G + Sbjct: 70 VKTEMHTSIGDAVSVLKQQNMQVLVTHLSDDSVDFRDIDYTQPTAIILGQEKHGATEEAI 129 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS AAAV LY Q Sbjct: 130 AVADKNIVIPMVGMVQSLNVSVAAAVVLYEAQRQR 164 >gi|123440446|ref|YP_001004440.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087407|emb|CAL10188.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 230 Score = 92.2 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + L+ V+ PHN+ AI+R+A A I +P+ L+ +A Sbjct: 10 CEMLATRQPDLTVCLEEVHKPHNVSAIIRTADAVGIHQI-HAIWPTPAMYTRLSSAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 SD + +++G E G+ + Sbjct: 69 SWVQVKTHSHITDAITHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISKE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALAMADKDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|242241345|ref|YP_002989526.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech703] gi|242133402|gb|ACS87704.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech703] Length = 230 Score = 92.2 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 1/156 (0%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + R L + ++ V+ PHN+ A++R+A A + + +++ +A Sbjct: 11 DMLNNRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQV-HAVWPTNRMKTLVSTAAGSNS 69 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 S S S ++LG E G+ + Sbjct: 70 WVQVKTHRSIHDAVSHLKSQGMQVLATNLSASAVDFRDVDYTRPTCILLGQEKTGISAEA 129 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 130 LALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|123965718|ref|YP_001010799.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9515] gi|123200084|gb|ABM71692.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9515] Length = 224 Score = 92.2 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R L ++++ VN PHN+ AILR+ A + ++ S + Sbjct: 16 NCRMENLTVLVEAVNKPHNLSAILRTCDAAGVFEANFICKRDEVKTFNSTAQGSQKWVKL 75 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + K + L+ + +LGAE GL + Sbjct: 76 NNHETTISAVSHLKKKGFKLYGTTLNDS-STDYRNFDYAENTCFVLGAEKWGLSDELISK 134 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS AA++ L+ Sbjct: 135 VDESIFIPMTGMVQSLNVSVAASILLFEAIRQR 167 >gi|300781739|ref|ZP_07091593.1| SpoU rRNA methylase [Corynebacterium genitalium ATCC 33030] gi|300533446|gb|EFK54507.1| SpoU rRNA methylase [Corynebacterium genitalium ATCC 33030] Length = 273 Score = 92.2 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 52/295 (17%), Positives = 101/295 (34%), Gaps = 38/295 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I+ ++ D + +++ + R+ + G V Sbjct: 1 MERITDPADPRLD---------------DVRDLKNTDNSKRYVFGEGP-LVAGR--VID- 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDAN----LPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 + ++ + L D P PV V + + ++ G + +H+GL Sbjct: 42 ---SRFPLRCVVGFEKKLDTFFADRAEQGLAPIDAPVYVVTRELLAEVAGYD-MHRGLIA 97 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 ++ + N++ L+VL+ V D NIGAI R+A DG++ + Sbjct: 98 VADRAEETSISEMLNARTLIVLEGVGDHENIGAIFRNAAGMDVDGVLLGAGTADPLYRRS 157 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK----------- 225 + + G + +P+ + + Q+ + Sbjct: 158 VRVSMGHVLRLPFAHLDGTSTTWQRSLDQLREQGFRLVSLTPDSRAVHLAEALVDDTGHP 217 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 K+AL++G EG GL A + M +LNV+ +AA+A Y Q Sbjct: 218 YKKVALLVGGEGPGLTEHAMRATDVRARIPMAAGTDSLNVATSAAIAFYERQRSL 272 >gi|113474137|ref|YP_720198.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101] gi|110165185|gb|ABG49725.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum IMS101] Length = 153 Score = 92.2 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 1/146 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL + P N G + R+ A + + L ++ ++ ++ Sbjct: 4 IVLVYPQIPQNTGNVARTCAATKTELHLVGPLGFEISDRYLKRAGLDYWPYVKLNYHNDW 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + H G + IG S K + L+ G+E GL ++ ++ Sbjct: 64 AEFKVYHHKLGGRLIGFSKMGKLNYTKFQYQTNDWLLFGSETNGLPKDVLNYCSATLYIP 123 Query: 256 M-PGIIKALNVSNAAAVALYITQNHF 280 M +++LN+S +AA+ L+ + Sbjct: 124 MTQPNVRSLNLSVSAALGLFEARRQL 149 >gi|4467108|emb|CAB37542.1| hypothetical protein [Arabidopsis thaliana] gi|7270785|emb|CAB80467.1| hypothetical protein [Arabidopsis thaliana] Length = 400 Score = 92.2 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 56/326 (17%), Positives = 105/326 (32%), Gaps = 75/326 (23%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS---------------------AALNNPS 65 + K Q S + ++ + G + + L Sbjct: 74 NPFVKHCLKLRQSSSYRHAHGSVLVVGTIPIRYVSVILYSLFFFIATERIVESSFLFYCV 133 Query: 66 RKIFQLLATKNALAR-------------------------LDWDANLPHP-----FPVKT 95 R I + + + L +A +P + Sbjct: 134 RLISCEIEFQGDNFKGVVHREVCMFQTNKQGMTTEIECLLLHEEAKIPQGLESLSIRIVR 193 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------------AVRNSQLLMVLDHVN 142 V + K+ G ++ A+ + S D ++ ++VLD + Sbjct: 194 VSSLVMKKLSGVQSTESVEAIALMRIPSSFTDLKDDKDIITDCNKWFPSAHRVLVLDSIQ 253 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA----------LEHIPYIRI 192 DP N+G ++RSA+AF+ DG + +++ GA H+ + Sbjct: 254 DPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRASRGASFQLPIVSGNWNHLKLLEN 313 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 L + Q + S Q + + LILG+EG GL + ++ + Sbjct: 314 EFQMKLLAGHPATTTQKLKPVSKLSVEFAQSLAEKPLCLILGSEGNGLSEQARKVC-VLV 372 Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278 + M G ++LNVS A + LY+ QN Sbjct: 373 SIPMAGDFESLNVSVAGGIFLYMLQN 398 >gi|315178841|gb|ADT85755.1| tRNA guanosine-2'-O-methyltransferase [Vibrio furnissii NCTC 11218] Length = 228 Score = 92.2 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A I + + SA Sbjct: 16 RQTDLTVCLEEVHKPNNVSAVIRTADAVGLHKI-HAVWPNEQMRTLTHTSAGARNWVEVE 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S L + SD A+I+G+E G+ + A Sbjct: 75 THNSTLDAIKTLKAQGMQVLVTNLSDDAVDFRDIDYTQPTAIIVGSEKVGISKQALALAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 QDIVIPMVGMVQSLNVSVASALILYEAQRQR 165 >gi|78776544|ref|YP_392859.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM 1251] gi|78497084|gb|ABB43624.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM 1251] Length = 249 Score = 92.2 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 8/230 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 LYG + + L + + +I +L + V + +I Sbjct: 20 LYGRNVIIEVLLDNTIEIHKLHLSNSNKSDGAIETILSLAKKRDIQVTYHDKNALSRISK 79 Query: 107 KEAVHQGLALETAPLLSPTLDAVRN--SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 QG+A++ + ++N L+ LD + +P N+G I+RS A DG+I Sbjct: 80 NSKQDQGVAIDIIANSYKNANEIKNLKKFKLLALDGIQNPQNLGMIIRSCAAGYIDGVIL 139 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 K+ S + A T + LSS +KK + Sbjct: 140 PKKNSAK--ISPLVIKASAGTLFKLPIYYCNTLDEVLKELKDTKIYLLSSHAKKSIYDLR 197 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + DK +LG E G+ + + ++ M +++LNV+ A++ + Sbjct: 198 QEDKSIFVLGNESDGVSREIEALCNDSINIPMNRDVESLNVAVTASLIAF 247 >gi|257146507|emb|CAX30793.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont of Glycaspis brimblecombei] gi|257146511|emb|CAX30796.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont of Diaphorina citri] Length = 239 Score = 92.2 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R L + L++V+ PHNI A++R+A A I S ++ A +A Sbjct: 15 MRQPDLTVCLENVHKPHNISAVIRTADAVGIPQI-HAIWCKNSSKSLSAAAAGSNHWVKV 73 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 S + ++ Q N +ILG E G+ + A Sbjct: 74 RTHASIENAISACKAAGIQILAAHLTNQAIDFRQIDYNQPTCIILGQERAGISKQALALA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 H+ M G++++LNVS A+A+ LY Q Sbjct: 134 DHNIHIPMMGMVQSLNVSVASALILYEAQRQR 165 >gi|329851903|ref|ZP_08266584.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] gi|328839752|gb|EGF89325.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] Length = 257 Score = 92.2 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 51/268 (19%), Positives = 99/268 (36%), Gaps = 15/268 (5%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I ++ D +L R +RD K + + G + +P + Sbjct: 4 IIAITDPSDVRL-RLYRDVKD-RDLTGR------EGLFMAEGRVVIERLFVSPWCVCISV 55 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131 L T + L L D + PV V +D++ G LAL + + ++ Sbjct: 56 LTTPDRLKML--DISQAGDVPVYVVDQAIMDQVAGFAIHRGYLALGRYSGPAGLGEVLKP 113 Query: 132 -SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++ L + + N+G ++R+A AF D ++ + + G + + Sbjct: 114 GRVRVLALSTIANTDNMGGLMRNAAAFGVDAVLLDAACCDPLYRKAIRVSVGG---VFQV 170 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + + ++ + + G LS L+ ++ A + GAEG GL P+ T Sbjct: 171 PHIRVPNLVEALTAHGVAPYALSPSGAVVLDDVAPAERSAFLFGAEGPGLAPEVMAACT- 229 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278 + M G +LNV+ + + LY Sbjct: 230 SVRIDMHGGFDSLNVATTSGIVLYHMCR 257 >gi|323182442|gb|EFZ67846.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1357] Length = 229 Score = 92.2 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T + A R L + ++ V+ PHN+ AI+R+A A + Sbjct: 1 MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + +A + SD+ + +++G Sbjct: 60 MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 120 QEKTGITQEALALADQDIIIPMTGMVQSLNVSVASALILYEAQRQR 165 >gi|294814058|ref|ZP_06772701.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|294326657|gb|EFG08300.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 363 Score = 92.2 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 66/291 (22%), Positives = 104/291 (35%), Gaps = 39/291 (13%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS---RKIFQ 70 S + H K R + K+ R + + G + V AL + Q Sbjct: 87 SARKGHV-KNRVANAKAKQSARRPVARRGGKGSSEMVV-GRNPVFEALRDGVPATTLYVQ 144 Query: 71 LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128 + R + P +D++ G HQGL L+ P + Sbjct: 145 QFIENDERVRDALQLATGRGTINIMEAPRPELDRMTGGL-NHQGLVLQVPPYEYAHPEDL 203 Query: 129 ------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L++ LD V DP N+GA++RS AF G++ +R + +A K+++G Sbjct: 204 AASAADHGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 263 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG----- 237 P R +NLT AL+ G +GL++D + + E Sbjct: 264 TAARTPVARATNLTRALESYQKAGLTVVGLAADGEHEVGDL------------EALGGPV 311 Query: 238 --------KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 KGL ET + + MPG ++LN AA V LY Sbjct: 312 VVVVGSEGKGLSRLVGETCDFLVRIPMPGGAESLNAGVAAGVVLYEAARRR 362 >gi|254388527|ref|ZP_05003761.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|326442462|ref|ZP_08217196.1| RNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|197702248|gb|EDY48060.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 316 Score = 92.2 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 66/291 (22%), Positives = 104/291 (35%), Gaps = 39/291 (13%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS---RKIFQ 70 S + H K R + K+ R + + G + V AL + Q Sbjct: 40 SARKGHV-KNRVANAKAKQSARRPVARRGGKGSSEMVV-GRNPVFEALRDGVPATTLYVQ 97 Query: 71 LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128 + R + P +D++ G HQGL L+ P + Sbjct: 98 QFIENDERVRDALQLATGRGTINIMEAPRPELDRMTGGL-NHQGLVLQVPPYEYAHPEDL 156 Query: 129 ------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 L++ LD V DP N+GA++RS AF G++ +R + +A K+++G Sbjct: 157 AASAADHGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 216 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG----- 237 P R +NLT AL+ G +GL++D + + E Sbjct: 217 TAARTPVARATNLTRALESYQKAGLTVVGLAADGEHEVGDL------------EALGGPV 264 Query: 238 --------KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 KGL ET + + MPG ++LN AA V LY Sbjct: 265 VVVVGSEGKGLSRLVGETCDFLVRIPMPGGAESLNAGVAAGVVLYEAARRR 315 >gi|299137092|ref|ZP_07030275.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8] gi|298601607|gb|EFI57762.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8] Length = 276 Score = 91.8 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 100/260 (38%), Gaps = 11/260 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLF-LYGVHTVSAALNNP--SRKIFQLLATKNALAR 80 R + K +++ S +S P +L + G + + AL + ++ ++ L R Sbjct: 9 SRTNARVKALRAAC--SGKSSLPGDLLGIEGENLIGEALRSGIGFDTVYVREGSEGVLER 66 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 + V + + V + G+A L A +NS++ +VL+ Sbjct: 67 ASLRGLQAQSWAV--LSKDVFESAVDTASPQ-GVAATFRIAQPLPLGAPKNSEVCLVLED 123 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N G ++RSA AFS + T + ++++G++ +P +R Sbjct: 124 IQDPGNFGTLIRSAEAFSVSRVYVTPGTVNQWNPKAMRASAGSVFRMPVVRGPLSEIKSA 183 Query: 201 KMHSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 S P+ Q AL++G EG GL E A H+ Sbjct: 184 LGAEGVRLYAAVARSSGATPVMQAKLLAPCALMIGNEGAGLSMTALELADEQVHIPCS-- 241 Query: 260 IKALNVSNAAAVALYITQNH 279 +++LN + A + +Y + Sbjct: 242 VESLNAAIAGSTLMYESFRQ 261 >gi|167752349|ref|ZP_02424476.1| hypothetical protein ALIPUT_00593 [Alistipes putredinis DSM 17216] gi|167660590|gb|EDS04720.1| hypothetical protein ALIPUT_00593 [Alistipes putredinis DSM 17216] Length = 249 Score = 91.8 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 36/256 (14%), Positives = 85/256 (33%), Gaps = 19/256 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + + ++S K R ++ G + + R + ++ A + L Sbjct: 4 AEIQLVRSLADK-RSRTEHGLFVAEGHKFIGELCTSALR-VRKIFALEG----------L 51 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V+TV + ++++ P +L++ LD V +P N+ Sbjct: 52 FEGGEVETVSSREMERLS-LLKTPSDSLALVEIPHHPFRPDTAQRELVLALDQVQNPGNL 110 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R A F I+ + + + + ++ GA+ + + Sbjct: 111 GTIIRLADWFGIPEIVCSPTTADCYNPKVVQATMGAILRVKVHYTALE--PYLAQARERN 168 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKAL 263 + + + + +++G EG+G+ P + + ++L Sbjct: 169 IPVYGTFLEGENIYSTPLTPGGIVLMGNEGQGIAPAAARHVSHKLFIPPYPADRNGSESL 228 Query: 264 NVSNAAAVALYITQNH 279 NV+ A AV + Sbjct: 229 NVAIATAVVCAEFRRQ 244 >gi|94986799|ref|YP_594732.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00] gi|94731048|emb|CAJ54411.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00] Length = 196 Score = 91.8 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 59/151 (39%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +VL +++DPHN+ AI RSA AF D I +P SAS Sbjct: 20 RQKNLTLVLANIHDPHNVSAIYRSADAFGIDTIHLYYTDTPFPKLGSKSSASAKKWVKTI 79 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S + +PL A+I+G E G+ P+ Sbjct: 80 YHQSANKLIRMLKEDNYKVIATSCTSQAQPLLSHNFTGSTAIIMGNEHAGVPPELTGLVD 139 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 S ++ M G++++ NVS AAA+ L Sbjct: 140 SELYIPMYGMVQSFNVSVAAAIILAEASRQR 170 >gi|302561652|ref|ZP_07313994.1| TrmH family RNA methyltransferase [Streptomyces griseoflavus Tu4000] gi|302479270|gb|EFL42363.1| TrmH family RNA methyltransferase [Streptomyces griseoflavus Tu4000] Length = 277 Score = 91.8 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 89/254 (35%), Gaps = 20/254 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANL 87 DY + + R G + A LL K A R D Sbjct: 14 DYTGLTDVELRRRREPAEGLFIAEGEKVIRRAGEAGYAMRSMLLTPKWADVMRDVIDRAE 73 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------------AVRNSQL 134 PV V P +K+ G LA L D + Sbjct: 74 A---PVYVVEPALAEKVTGYHVHRGALASMQRTPLPTAADVLRGVGTMPSSAPREAAVRR 130 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + V + + D N+GA R+A A D ++ T R + K + GA+ H+P+ R+++ Sbjct: 131 VAVFEDLVDHANLGAAFRNAAALGVDAVLLTPRCADPLYRRAVKVSMGAVFHVPWTRLTS 190 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATSM 251 GF T L D K + +++K+ L+LG EG GL +A Sbjct: 191 WPQDAGIFREHGFVTAALCLDEKSITLEELAARRHEKLVLMLGTEGDGLSADALRSADEW 250 Query: 252 AHLHMPGIIKALNV 265 + M G + +LNV Sbjct: 251 VRIPMSGGVDSLNV 264 >gi|15840295|ref|NP_335332.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] gi|13880456|gb|AAK45146.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] Length = 242 Score = 91.8 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 90/235 (38%), Gaps = 6/235 (2%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + GV V L + + L T LA L D P + +++G Sbjct: 1 MVIAEGVLVVQRMLASRFTPL-ALFGTDRRLAELKDDLA-GVGAPYYRASADVMARVIGF 58 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 LA V ++ + VL+ VND N+G+I R+A S D ++ Sbjct: 59 HLNRGVLAAARRVPEPSVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTG 118 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ----E 223 + + + G +PY R ++ L + GF+ + ++ Sbjct: 119 CADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAA 178 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +++IAL++GAEG GL + + M +LNV+ AAA+A Y Sbjct: 179 VSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTR 233 >gi|116070438|ref|ZP_01467707.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. BL107] gi|116065843|gb|EAU71600.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. BL107] Length = 340 Score = 91.8 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 62/201 (30%), Positives = 106/201 (52%), Gaps = 8/201 (3%) Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVL 138 V+ V + ++ G +VHQG+AL+TA + L+A+ + LL+ L Sbjct: 14 AKASGVLVEEVTWARLAQVTG-GSVHQGIALQTAAADTLDLNALIDGCSELGEPPLLLAL 72 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DPHN+GA++RSA A G++ +R S + AK A+GA+EH+P R+ NL + Sbjct: 73 DGITDPHNLGAVVRSAEAMGAHGLVLPQRRSAGLTGSAAKVAAGAMEHLPVARVVNLNRS 132 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L+K+ G++ IGL+++ L + + L+ G+E +GL T+ + + + G Sbjct: 133 LEKLKDSGYRVIGLAAEGDVTLMDVDLDGPLVLVTGSEDQGLSLLTRRHCDQLVRIPLRG 192 Query: 259 IIKALNVSNAAAVALYITQNH 279 I +LN S A A+ +Y Sbjct: 193 ITPSLNASVATAMCVYEVARR 213 >gi|330827726|ref|YP_004390678.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas veronii B565] gi|328802862|gb|AEB48061.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas veronii B565] Length = 243 Score = 91.8 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L + ++ V+ PHN+ AI+R+A A + + Sbjct: 15 QRQLDLTVCMEEVHKPHNLAAIVRTADAIGIHRV-HAVWPKTWIHKRKGTARGSQNWVDV 73 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + T + S SDS A+++G E G+ + A Sbjct: 74 KLHPDIGTAVAELKASGMQILATHLSDSSVDFRAIDYTKPTAILVGQEKHGIGEEALALA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS AAA LY Q Sbjct: 134 DHHIVIPMVGMVQSLNVSVAAAAILYEAQRQR 165 >gi|294811612|ref|ZP_06770255.1| Putative rRNA methylase [Streptomyces clavuligerus ATCC 27064] gi|326440200|ref|ZP_08214934.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064] gi|294324211|gb|EFG05854.1| Putative rRNA methylase [Streptomyces clavuligerus ATCC 27064] Length = 272 Score = 91.8 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 61/253 (24%), Positives = 103/253 (40%), Gaps = 9/253 (3%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 ++D +LR DY + + R G + A + LL++ Sbjct: 7 IEDPDDPRLR----DYTGLTDVELRRRREPAEGLFIAEGEKVIRRAKDAGYAMRSMLLSS 62 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134 K A D LP PV V P+ +++ G LA + + ++ Sbjct: 63 KWVDAMRDVIDELPA--PVYAVSPELAERVTGYHVHRGALASMQRKPEPDAAELLAGARR 120 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + +++ VND NIGAI RSA A D ++ + + K + GA+ +PY R+ Sbjct: 121 VAIMEAVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDG 180 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSM 251 L+ + GF + L+ K E+ D++AL+LGAEG+GL + A Sbjct: 181 WPKGLEGVREAGFTLLALTPHEKAAPIDEVAPHRLDRVALMLGAEGEGLSRRALMAADEW 240 Query: 252 AHLHMPGIIKALN 264 + M + +LN Sbjct: 241 VRIPMAHGVDSLN 253 >gi|19113497|ref|NP_596705.1| ribose methyltransferase [Schizosaccharomyces pombe 972h-] gi|74627042|sp|O94631|MRM1_SCHPO RecName: Full=rRNA methyltransferase, mitochondrial; AltName: Full=Mitochondrial large ribosomal RNA ribose methylase; Flags: Precursor gi|4456828|emb|CAB37444.1| ribose methyltransferase [Schizosaccharomyces pombe] Length = 301 Score = 91.8 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 60/285 (21%), Positives = 114/285 (40%), Gaps = 42/285 (14%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLP 88 KK ++ K R + ++ F++G H+V AL R+ L + + L Sbjct: 14 KKAKAHLSKERRLIKEDSEFVFGTHSVKNALATRKRECRALYVQNADIHSEFEEFLNKLQ 73 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQG-----------------------------LALETA 119 + P+K+V + +++I + + Sbjct: 74 YKIPIKSVNKEHLNQITACRPHNGVVLEASSLNVPTISDLLFPAGEEYNNKNGQDSPHND 133 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + + L + +D + DP N+GA++RSA GI+ +K+++ S V++K+ Sbjct: 134 LNEGKSSSSDNYPPLYVYVDGITDPQNMGAVIRSAYILGAKGILLSKKHNTFLSPVVSKA 193 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS---------DSKKPLEQEIKNDKIA 230 ++GALE + N L+ G++ IG + ++ E+ N+ Sbjct: 194 SAGALEVFNISHVKNPMVFLRNSVLKGWKVIGTKPALPDNKDQIYTPHKIKTELMNEPKI 253 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGI-IKALNVSNAAAVALY 274 L+LG+E KGLR + + + +LNVS AA + LY Sbjct: 254 LVLGSE-KGLRTNILTQCSHYVSIPGGDKYVDSLNVSVAAGILLY 297 >gi|311105998|ref|YP_003978851.1| rRNA methylase SpoU [Achromobacter xylosoxidans A8] gi|310760687|gb|ADP16136.1| SpoU rRNA methylase family protein 1 [Achromobacter xylosoxidans A8] Length = 262 Score = 91.8 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 95/281 (33%), Gaps = 28/281 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS R++ K + + P + L GVH A Sbjct: 1 MKHISS------------------RDNPAVKALAKLAVTAGKRGAP--VLLEGVHLCQAW 40 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + + P + + + QG+A + P Sbjct: 41 LQHHGAPDQAIFDVERLSQPDIAALAAAVPDRDCLALDARLMQSLAAVESGQGVAFQVTP 100 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + DAV + +L D + DP N+G +LR+ A + + + S + +S Sbjct: 101 PVLDLPDAVDENCVL--FDRIQDPGNVGTLLRTCAAAGVKRVFLATGTAAAWSPKVLRSG 158 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GA + I D + + + D + L + + + A + G EG+G+ Sbjct: 159 QGAHF---ALAIHEHVDLAALLPRLQIPLVATALDGARDLYEGVLPQRCAWVFGHEGQGV 215 Query: 241 RPKTQETATSMAHLH--MPGIIKALNVSNAAAVALYITQNH 279 + A + M +++LNV AAA+ L+ + Sbjct: 216 AAELLAAARLKVRIPHDMA-AVESLNVGAAAAICLFEQRRQ 255 >gi|319440343|ref|ZP_07989499.1| putative rRNA methylase [Corynebacterium variabile DSM 44702] Length = 299 Score = 91.8 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 100/269 (37%), Gaps = 22/269 (8%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + ++ + G + V +AL + S + L T++AL + + Sbjct: 31 PRIVNAAKLH-RAAVRRKTGRFLAEGSNAVMSALRHGS--VVDLFLTEDALDSFGRELDG 87 Query: 88 P-----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVL 138 V + + + AL + L +L V Sbjct: 88 LTGDDTRGVHVSLITDRAAHALSESVTSTGLFALCVSQLTDLDGVLASAGAGTPSVLAVP 147 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 +P N GA++R A A G+I + +S++G+L H+P R +++ + Sbjct: 148 VETAEPGNAGALIRVADATGAAGVIFAGETVDPQGGKAVRSSAGSLFHLPVSRHTSIPEV 207 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEI---------KNDKIALILGAEGKGLRPKTQETAT 249 ++++H G+ + S D L++ ++A + G E GL Q+ A Sbjct: 208 VERLHEQGYVVLATSGDGDVSLDEASIAPAGETPLLGQRVAWLFGNEAHGLGD-WQDLAD 266 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278 + M G+ ++ N+ AAAV LY T Sbjct: 267 VRVSIPMQGLAESFNLVTAAAVCLYETAR 295 >gi|126437686|ref|YP_001073377.1| RNA methyltransferase [Mycobacterium sp. JLS] gi|254806451|sp|A3Q6V9|Y5122_MYCSJ RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mjls_5122 gi|126237486|gb|ABO00887.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium sp. JLS] Length = 314 Score = 91.8 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 66/248 (26%), Positives = 112/248 (45%), Gaps = 11/248 (4%) Query: 43 TSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQ 99 E + G + V L P+ ++ + T+ + + VP Sbjct: 66 RKTDETELVLGRNPVVECLRAEVPATALYVAMGTEADERVTEAVQIAADSGISILEVPRS 125 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152 +D++ A+HQGL L+ P D LL+ LD+++DP N+GAI+R Sbjct: 126 DLDRMS-NNALHQGLGLQVPPYDYAHPDDLLATAKADGAPALLVALDNISDPRNLGAIVR 184 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 S AF G++ +R S S +AV ++++GA +P R +NL L+ G Q +GL Sbjct: 185 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQVVGL 244 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 +D L++ + +++G+EGKGL +E ++ + M G ++LN S AA V Sbjct: 245 DADGDTTLDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVAAGVV 304 Query: 273 LYITQNHF 280 L Sbjct: 305 LAEIARQR 312 >gi|72080483|ref|YP_287541.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448] Length = 249 Score = 91.8 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 100/257 (38%), Gaps = 15/257 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K++ K ++ + + G + +A+N + ++L TKN + + Sbjct: 8 NNPIIKEIGKLKLK-KYRNLWNKFVVEGEKDIESAINAG--LVLRILTTKNNVEKYQKV- 63 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V V + ++K+ ++ + +A+ + D + + +L++ L+++ +P Sbjct: 64 ----NVDVVIVSQKILEKLSQHKSPSEVIAVCKSKKQRKIKDFLDSKRLVI-LENIQNPG 118 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+ +F D + + ++ +K A Y + Sbjct: 119 NLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAI--FMANIYFLKNISDFFKFGPKQE 176 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + I +I G EGKG+ K + A ++ + ++LN+ Sbjct: 177 IIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPI--NFESLNI 234 Query: 266 SNAAAVALYITQNHFAK 282 ++A A+ + K Sbjct: 235 ASANAIFCHFF--QLKK 249 >gi|78356529|ref|YP_387978.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218934|gb|ABB38283.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 196 Score = 91.8 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 59/151 (39%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +VL +++DPHN+ AI RS AF + +P SAS Sbjct: 20 RQKDLTLVLANIHDPHNVSAIYRSCDAFGVSRVHLYYTDTPFPPLSGRSSASARKWVETE 79 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 A S S +PL + A+I+G E +G+ + E Sbjct: 80 RHEDPAQLAAALRKKGCRILATSCSPSARPLREWDMTGPTAIIMGNEHRGVDAELMEIVD 139 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ M G+I++ NVS AAAV L Sbjct: 140 GEVYIPMFGMIQSFNVSVAAAVILSEASRQR 170 >gi|119947098|ref|YP_944778.1| tRNA guanosine-2'-O-methyltransferase [Psychromonas ingrahamii 37] gi|119865702|gb|ABM05179.1| tRNA guanosine-2'-O-methyltransferase [Psychromonas ingrahamii 37] Length = 234 Score = 91.8 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R L + L+ V+ HN+ AI+R+A A + + + + Sbjct: 14 NYRQPDLTVFLEQVHKAHNLAAIVRTADAVGVSDV-HATWENKTTQISGNTATGSQNWVN 72 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + SDS + A+++G E G+ P+ Sbjct: 73 LHSHETLEDAVKALRAQGMQIIATNLSDSAIDFREVDYTKPTAILMGQEKHGISPEALAL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G+ ++LNVS A+A+ LY Q Sbjct: 133 ADQDVIIPMVGMCQSLNVSVASALILYEAQRQR 165 >gi|302753442|ref|XP_002960145.1| hypothetical protein SELMODRAFT_3012 [Selaginella moellendorffii] gi|300171084|gb|EFJ37684.1| hypothetical protein SELMODRAFT_3012 [Selaginella moellendorffii] Length = 244 Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 101/246 (41%), Gaps = 24/246 (9%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF------------PVKTVPP 98 LYG+ V AAL R ++ L + V+T Sbjct: 3 LYGIGPVRAALQARRRDLYVLYIQNGLDEKHPGKRKALADVLWIMKAAKRLELRVETTSK 62 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAIL 151 ++ +V HQG+ L+ +PL + + + + + LD V DP N GAIL Sbjct: 63 HALNVLVD-NRPHQGMVLDASPLEMVDISALDRPDAMLARAPVWVALDEVKDPQNFGAIL 121 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTI 210 RS+ F G++ + S S V++K+++GALE I + N+ + Sbjct: 122 RSSHFFGVCGVVVCSKNSAPLSGVVSKASAGALEMIDLLSCKNMMMFLRDSADNGWRVIG 181 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 +S + L KN L+LG EG G+RP A + PG + +LNVS AA Sbjct: 182 TSNSPESEVLGDLPKNVPTILVLGNEGVGIRPFLNSEADCVLR---PGTVDSLNVSVAAG 238 Query: 271 VALYIT 276 V L+ Sbjct: 239 VLLHEL 244 >gi|319442536|ref|ZP_07991692.1| putative rRNA methylase [Corynebacterium variabile DSM 44702] Length = 281 Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 108/281 (38%), Gaps = 23/281 (8%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 S+ D +L D + + S +++ + G + V L + ++ Sbjct: 6 SITDPADPRLD----DIRDLNSSDRRPDLPGGRGLVIAEG-NLVVPRLAASRFPVRCVMG 60 Query: 74 TKNALARLDWDANL-------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 L L+ A+ P+ V + + ++ G + +H+GL + PT+ Sbjct: 61 FARRLEELEDAASADPAVAAGLADVPIYEVSREVLAEVAGFD-MHRGLVAAADRVGEPTV 119 Query: 127 DA-----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 +++++ VL+ V D NIGA+ R+A ++ + + + + Sbjct: 120 GEVLDGLDEDNRVIGVLEGVGDHENIGALFRNAAGLGVGAVLLGAGCADPLYRRVVRVSM 179 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-----DKIALILGAE 236 G + +P+ + Q+ + + + + + DK+A+++GAE Sbjct: 180 GHVLRVPFAHVPGKPTTWQRGLADLQERGYRVVAMTPNTDNTLADAVRGADKVAVMVGAE 239 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 G GL A A + M +LNV+ +AAV Y Q Sbjct: 240 GPGLTEHAMRAADVRAKIPMSPGTDSLNVATSAAVGFYAAQ 280 >gi|149378386|ref|ZP_01896087.1| tRNA (guanosine-2'-O-)-methyltransferase [Marinobacter algicola DG893] gi|149357335|gb|EDM45856.1| tRNA (guanosine-2'-O-)-methyltransferase [Marinobacter algicola DG893] Length = 245 Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 1/152 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L ++ D V+ P N+ AI+RS AF + A + + Sbjct: 16 RQPDLSVLTDQVHKPRNLSAIIRSCDAFGLA-NMHVVWPREGFRAFRKTAGGSYNWVTTH 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + SD + +I+G E G+ E A Sbjct: 75 THPTMDDAVSELKGQGHKLYAAQLSDRAIDYREADFTVPCTVIMGNEVDGVSHGAAEQAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G++++LNVS+A A+ L Q Sbjct: 135 EHIVIPMMGMVESLNVSSACAIILSEAQRQRK 166 >gi|221066100|ref|ZP_03542205.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1] gi|220711123|gb|EED66491.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1] Length = 263 Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 52/252 (20%), Positives = 96/252 (38%), Gaps = 10/252 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ K+++ +Q S + ++L G H AAL + + A + Sbjct: 12 SRDNAFVKELRRLSQDSTAYRKQGQVWLEGDHLCRAALVRDLKPKVAVFAQSFWPQAPEE 71 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V + D+I E+ + + ++ +VLD V D Sbjct: 72 WVQAASKVVV--LADALFDEISSLESPARMG----YVMDWDAALQAQSGIATVVLDRVQD 125 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G+ILRSA AF I+ K + S + ++ GA +++ + Sbjct: 126 AGNVGSILRSASAFGFTQIVALKGTAALWSQKVLRAGMGAHF----GLHLVEAASVEDVK 181 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + SS + + A +G EG+G+ E A + PG ++L Sbjct: 182 ALQVPLVVTSSHQGTLIHEADLPWPCAWAMGHEGQGVGEALMEMAQRRISIAQPGGEESL 241 Query: 264 NVSNAAAVALYI 275 NV+ AAA+ L+ Sbjct: 242 NVAAAAAICLHA 253 >gi|295690458|ref|YP_003594151.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756] gi|295432361|gb|ADG11533.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756] Length = 268 Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 96/244 (39%), Gaps = 8/244 (3%) Query: 41 RHTS---QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW-DANLPHPFPVKTV 96 + + G + A + + ++ LL +L+ A+LP PV Sbjct: 22 KERDLVGREGLFIAEGETVLRAFVRDALERVVSLLIDPKRRDKLEDVFASLPEDVPVHFA 81 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLL---SPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 +D I G LA+ P + L + +++VL + + NIG I R+ Sbjct: 82 DQAVLDSIAGFHLHRGVLAVGRKPQPVAANALLAGLPARAVVLVLCGIANHDNIGGIYRN 141 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF D +I + + GA +P R+ D + + GF+ + LS Sbjct: 142 AAAFGADAVILDADCCDPLYRKAIRVSVGAALSVPTARLGRGEDIADLLANTGFEALALS 201 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + L + + A++LGAEG GL P A + M +LNV+ + + L Sbjct: 202 PSASEVLARLKPAPRTAVLLGAEGPGLSPDVMARA-RTVGVPMAKGFDSLNVATTSGIVL 260 Query: 274 YITQ 277 + + Sbjct: 261 HHLR 264 >gi|253990660|ref|YP_003042016.1| methyltransferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782110|emb|CAQ85274.1| similar to putative trna/rrna methyltransferase yfif escherichia coli [Photorhabdus asymbiotica] Length = 338 Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 58/313 (18%), Positives = 96/313 (30%), Gaps = 39/313 (12%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSR----------------------- 41 + S K S K + RR++ + ++ R Sbjct: 24 DSRSSNKRPSGKGRDQGQRRRDNERSSRSPRLTERERSPWKTVSRPESDSLMPEHNGISG 83 Query: 42 ---------HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHP 90 + E +YG + A N S I + ++ R + Sbjct: 84 KSQIDPEQLRRQRMEETRIYGENACQAMFKNRSEAIVRAWFIESVTPRFRNALKWMAANR 143 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHN 146 V + K+ G E H G+ L ++ L+ V +PHN Sbjct: 144 KAYHVVDEAELTKVSGTE-HHGGVCFLIKKRSGLDVETYLKDAPVKDCVLALEDVGNPHN 202 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IGAI+RS F G++ A + + GA S T + + Sbjct: 203 IGAIMRSCAHFGVQGVVLQDVALLESGAAIRTAEGGAEHIKGIDADSLTTTLNKFRKAGY 262 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 S L + +K+ L+LG E GL T E + G++++LNVS Sbjct: 263 TIVTTSSHKGSTNLAKAELPEKMVLVLGEERDGLSDSTWEYGDMSLFVGGTGLVESLNVS 322 Query: 267 NAAAVALYITQNH 279 A + L Sbjct: 323 VATGIMLAEWWRQ 335 >gi|145297150|ref|YP_001139991.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|142849922|gb|ABO88243.1| tRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 248 Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L + ++ V+ PHN+ AI+R+A A + + Sbjct: 15 QRQLDLTVCMEEVHKPHNLAAIVRTADAIGIHRV-HAVWPKTWIHKRKGTARGSQNWVDV 73 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + + S S+S A+++G E G+ + A Sbjct: 74 KLHPDIGSAVAELKASGMQIVATHLSESSVDFRTIDYTRPTAILVGQEKHGIGEEALALA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS AAA LY Q Sbjct: 134 DHHIVIPMVGMVQSLNVSVAAAAILYEAQRQR 165 >gi|166197675|ref|NP_899086.2| RNA methyltransferase-like protein 1 [Mus musculus] gi|81889274|sp|Q5ND52|RMTL1_MOUSE RecName: Full=RNA methyltransferase-like protein 1 gi|56800171|emb|CAI35103.1| RNA methyltransferase like 1 [Mus musculus] gi|148680911|gb|EDL12858.1| RNA methyltransferase like 1 [Mus musculus] Length = 418 Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 90/313 (28%), Gaps = 50/313 (15%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 Y K R + + + + + L G ++ AL + + Sbjct: 92 LRYDKAFPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEY 151 Query: 78 LARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLL 135 + L D VK + +V + + + + P L+ Sbjct: 152 VKELPVDKLKDVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDPVKMTYPETPLHHTLPLV 211 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE---------- 185 ++ D++ DP N+G ILRSA C ++ TK + + ++ GA Sbjct: 212 LICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNNVEW 271 Query: 186 -----HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------------- 227 H+P + D D + Sbjct: 272 ETVPNHLPPDTRVYVADNCGHYAQVQMSDKTGDRDWACDRRFLKFHKYEEDLDTKTRKDW 331 Query: 228 ----------------KIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSN 267 A+++G E G+ ++ + A + + + +LN + Sbjct: 332 LPKLEVQSYDLDWTGAPAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAM 391 Query: 268 AAAVALYITQNHF 280 AA++ L+ + Sbjct: 392 AASILLFEGKRQL 404 >gi|291514391|emb|CBK63601.1| rRNA methylases [Alistipes shahii WAL 8301] Length = 243 Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 3/153 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R + ++ +++ N A++R AF + T + P E + + Sbjct: 50 MRTRYMTVLAENMYHGQNAAALIRHCEAFGVQEMHTVETLCPFEPNPDIARGTHQWVDVR 109 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + A K + + P ++ AL+ G E G+ + +A Sbjct: 110 RHASTGEAVAALKGAGYRIVATTPHREDATPETFDVGRGPFALVFGTEHAGISDEVIASA 169 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY---ITQN 278 + M G++++LNVS +AA+ +Y Sbjct: 170 DEFLRIPMCGMVESLNVSASAAILIYTLSERMR 202 >gi|283850256|ref|ZP_06367545.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. FW1012B] gi|283574282|gb|EFC22253.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. FW1012B] Length = 196 Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 66/151 (43%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L +V+++++DPHN+ AILRS AF + + + S S Sbjct: 20 RQTDLTLVINNIHDPHNVSAILRSCDAFGIHRVHLLYTDTAFPALGKKSSGSAKKWVETI 79 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + A L S++ +PL+ K+A+ILG E +G+ Sbjct: 80 RHPDAASLAASLKGQGYTLVATLCSETARPLQDWDLTGKVAIILGNEHRGVDEDLAPHVD 139 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ M G++++LNVS AAAV LY Sbjct: 140 GALYIPMQGMVQSLNVSVAAAVILYEGFRQR 170 >gi|221632050|ref|YP_002521271.1| tRNA guanosine-2'-O-methyltransferase [Thermomicrobium roseum DSM 5159] gi|221155367|gb|ACM04494.1| tRNA guanosine-2'-O-methyltransferase [Thermomicrobium roseum DSM 5159] Length = 217 Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 2/153 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII--TTKRYSPSESAVLAKSASGALEHI 187 R L +VL++V+DPHN+ A+LRS A + T P S ++ SA LE + Sbjct: 20 RQPDLTVVLENVHDPHNVSAVLRSCDAVGLLRVHLVYTLEEFPELSENVSGSALKWLELV 79 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + I L+ + T L +AL+ G E +G+ + Sbjct: 80 FHPSIEACYRTLRSQGFTIYTTYLGDPARSVDLYDLDLTKPVALVFGNEQRGVSDEAVAG 139 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LN+S A AV+LY Sbjct: 140 ADGNFVIPMMGMVRSLNISVACAVSLYEALRQR 172 >gi|330447150|ref|ZP_08310800.1| spoU rRNA Methylase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491341|dbj|GAA05297.1| spoU rRNA Methylase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 241 Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 56/151 (37%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ P+N+ AI+R+A A + + SA Sbjct: 16 RQPDLTVCMEEVHKPNNVSAIIRTADAVGVHKV-HAVWPKEGMRVLSHTSAGARNWVELD 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S + SD+ + A+ILG E G+ + A Sbjct: 75 THDSMVEAVQALKDQGMQVLATNLSDTAIDFREVDYTKPTAIILGGEKNGITAEALSMAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 165 >gi|297379754|gb|ADI34641.1| RNA methyltransferase, TrmH family, group 3 [Helicobacter pylori v225d] Length = 227 Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + LN+ K+ ++ +K + + L P + + K Sbjct: 4 VIYGKQVIMHILNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ L+ +L ++ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLARVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + ++ T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|161936340|ref|YP_128429.2| tRNA guanosine-2'-O-methyltransferase [Photobacterium profundum SS9] Length = 234 Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ P+N+ AI+R+A A + + + SA Sbjct: 16 RQPDLTVCMEEVHKPNNVSAIIRTADAVGIHKV-HAVWPKENMRVLSHTSAGARNWVELD 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + Q SD+ A+ILG E G+ + A Sbjct: 75 THDNMVDAITQLKAQGMQILATNLSDTAIDFRDVDYTKPTAIILGGEKNGITAEALAQAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 165 >gi|71893496|ref|YP_278942.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J] Length = 249 Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 100/257 (38%), Gaps = 15/257 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K++ K ++ + + G + +A+N + ++L TKN + + Sbjct: 8 NNPIIKEIGKLKLK-KYRNLWNKFVVEGEKDIESAINAG--LVLRILTTKNNVEKYQKV- 63 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V V + ++K+ ++ + +A+ + D + + +L++ L+++ +P Sbjct: 64 ----NVDVVIVSQKILEKLSQHKSPSEVIAVCKSKKQRKIKDFLDSKRLVI-LENIQNPG 118 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+ +F D + + ++ +K A Y + Sbjct: 119 NLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAI--FMANIYFLKNISDFFKFGPKQE 176 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + I +I G EGKG+ K + A ++ + ++LN+ Sbjct: 177 IIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPI--NFESLNI 234 Query: 266 SNAAAVALYITQNHFAK 282 ++A A+ + K Sbjct: 235 ASANAIFCHFF--QLKK 249 >gi|256389787|ref|YP_003111351.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM 44928] gi|256356013|gb|ACU69510.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM 44928] Length = 272 Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 96/274 (35%), Gaps = 25/274 (9%) Query: 22 KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81 ++ + +++ Q+ + + + GV ++ A R L+ L+R Sbjct: 6 RVASRNARFQQWQTLLTNRQKRQRAGRFLVQGVRPLTLAAEQGWRIEELLVDDDRRLSRW 65 Query: 82 DWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLM 136 D A V +P + ++ K+ L + L ++ ++ L + Sbjct: 66 AEDFLDAAHTADADVIALPADMLAELGEKDQEAAPELLAVVAMPPDDLIRIQITDTFLGV 125 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 D P N+G ++RSA AF DG++ T + ++++G+L +P +R + Sbjct: 126 AFDRPAQPGNLGTLIRSADAFGADGVVVTGHAADVYDPRTVRASTGSLFGLPTVRTQSHR 185 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 + L+ + G +G D +E ++G E G+ +E + + M Sbjct: 186 EVLEWLSETGVTVVGTDEDGDTDIEDYDFCAPTLFVVGNEAVGMSTGWREACDRVLSIPM 245 Query: 257 PGI----------IKALNVSNAAAVALYITQNHF 280 G V LY Sbjct: 246 RGTASSLNAANAAT----------VVLYEAARQR 269 >gi|271502622|ref|YP_003335648.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech586] gi|270346177|gb|ACZ78942.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech586] Length = 230 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R L + ++ V+ PHN+ A++R+A A + + +++ +A Sbjct: 14 NNRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQV-HAVWPTSRMKTLVSTAAGSNSWVQ 72 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + A S ++LG E G+ + Sbjct: 73 VKTHRTIQDAARHLKTQGMQILATNLSADAVDFRDVDYTRPTCILLGQEKTGISGEALAL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 133 ADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|210134755|ref|YP_002301194.1| 23S rRNA methyltransferase [Helicobacter pylori P12] gi|210132723|gb|ACJ07714.1| 23S rRNA methyltransferase [Helicobacter pylori P12] Length = 227 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + LN+ K+ ++ +K + + L P + + + Sbjct: 4 VVYGKQVIMHILNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLARGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLAKVELPLATSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + + T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLIYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223 >gi|293417112|ref|ZP_06659739.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B185] gi|291431143|gb|EFF04136.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B185] Length = 229 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T + A R L + ++ V+ PHN+ AI+R+A A + Sbjct: 1 MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + +A + SD+ + +++G Sbjct: 60 MASAAAGSNSWVQVKTHRTIGDAVTHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 120 QEKTGITEEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|119386533|ref|YP_917588.1| RNA methyltransferase [Paracoccus denitrificans PD1222] gi|119377128|gb|ABL71892.1| RNA methyltransferase, TrmH family, group 3 [Paracoccus denitrificans PD1222] Length = 265 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 93/230 (40%), Positives = 131/230 (56%), Gaps = 12/230 (5%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK--I 104 E ++L+G+H V AL NP R+ +L+ T+NAL RL LP + V +T D+ Sbjct: 27 ETVWLFGLHAVRDALANPRREKLRLVVTRNALDRLGP---LPPDLAHEIVDARTFDRAVP 83 Query: 105 VGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + E+VHQG ALE PL +L LL+ LD V DPHN+GAILRSA F Sbjct: 84 LPAESVHQGAALEVRPLKWGSLVDLALSGPGRPLLVALDRVTDPHNVGAILRSAEVFGAR 143 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I R+S E+ LAK+ASGALE PY+R++NL D L ++ S G+ +GL + L Sbjct: 144 AVIAPARHSAPETGALAKTASGALERQPYLRVTNLADTLIELQSMGYTVLGLDGTGDELL 203 Query: 221 EQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + +++ I L+LGAEG GLR +T+ET + + +LNVSN Sbjct: 204 PEALRDLSGRAICLVLGAEGPGLRERTRETCDRILRIPFAADFGSLNVSN 253 >gi|302533437|ref|ZP_07285779.1| rRNA methylase [Streptomyces sp. C] gi|302442332|gb|EFL14148.1| rRNA methylase [Streptomyces sp. C] Length = 271 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 61/253 (24%), Positives = 100/253 (39%), Gaps = 9/253 (3%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 ++D +LR DY + + R G + A + LL+ Sbjct: 7 IEDPDDPRLR----DYTGLTDVELRRRREPAEGLFIAEGEKVIRRAKDAGYEMRSMLLSA 62 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134 K D LP PV V P +++ G LA L + + +++ Sbjct: 63 KWVDVMRDVIDELPA--PVYAVSPDLAERVTGYHVHRGALASMQRKPLPTAQELLASARR 120 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + V++ VND NIGAI RSA A D ++ + + K + GA+ +PY R+ Sbjct: 121 VAVMEAVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEA 180 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSM 251 +L + GF+ + L+ K D++AL+LGAEG GL + A Sbjct: 181 WPKSLDTVREAGFKLLALTPHEKASPIDVAAPQTLDRVALMLGAEGDGLSTQALVAADEW 240 Query: 252 AHLHMPGIIKALN 264 + M + +LN Sbjct: 241 VRIPMAHGVDSLN 253 >gi|220907253|ref|YP_002482564.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7425] gi|219863864|gb|ACL44203.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7425] Length = 152 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 1/146 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL H P N G I R+ A + + L ++ + + Sbjct: 3 VVLVHPQIPPNTGNIARTCAATQTELHLVEPLGFELSDRYLKRAGLDYWPFVHLTCHPDW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 Q + G + IG + + Q L+ G+E GL + ++ Sbjct: 63 PSFTQVVAKRGGRLIGFDTTGESNAFQFKFAADDWLLFGSETDGLPAEVLVACDDTVYIP 122 Query: 256 M-PGIIKALNVSNAAAVALYITQNHF 280 M +++LN+S + A+ L+ + Sbjct: 123 MGQPGVRSLNLSVSVAIGLFEARRQL 148 >gi|301168477|emb|CBW28067.1| SpoU rRNA Methylase family protein [Bacteriovorax marinus SJ] Length = 252 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 18/242 (7%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP---VKTVPPQTIDKIV- 105 + G+H+++ A+ N + +++AT L L VK V P + K+ Sbjct: 6 LIVGIHSIAEAITNRPSAVRKIIATAEGLKEFRKKTRLDKEIKQFDVKIVSPHDVQKMAE 65 Query: 106 --------GKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAIL 151 + V + + P+ + L ++ LD V D HN AI+ Sbjct: 66 QFYKELELSFQRVPSQIFMVVDPVETYDLAWLYDQIDKSPRYKILCLDQVTDVHNAAAIM 125 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A + D ++T + A+ ASGA+EH+ + S+L A+ K+ IG Sbjct: 126 RTAAFYGVDCVVTGAKGHFGTGPSFARIASGAIEHVNIVICSSLPKAITKLIEKNVSVIG 185 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 S +K+ + + +AL+LGAE G+ + G IK+LNVS AAA+ Sbjct: 186 FSEHAKEDGDGVDISGHVALVLGAEDVGMSNAVSRVVEHRVAIKPLGKIKSLNVSVAAAI 245 Query: 272 AL 273 A+ Sbjct: 246 AM 247 >gi|269137386|ref|YP_003294086.1| tRNA guanosine-2-O-methyltransferase [Edwardsiella tarda EIB202] gi|267983046|gb|ACY82875.1| tRNA guanosine-2-O-methyltransferase [Edwardsiella tarda EIB202] gi|304557487|gb|ADM40151.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Edwardsiella tarda FL6-60] Length = 219 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 59/151 (39%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ A++R+A A + S +++ +A Sbjct: 5 RQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQV-HAVWPGKSMRTLVSTAAGSNSWVNVK 63 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 T + S + + +++G E +G+ + + A Sbjct: 64 THRDIATAVGELKGQGMQILATNLSATAVDFREIDYTRPTCILMGQEKRGISAEALQLAD 123 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 124 RDIIIPMVGMVQSLNVSVASALILYEAQRQR 154 >gi|319957044|ref|YP_004168307.1| tRNA guanosine-2'-o-methyltransferase [Nitratifractor salsuginis DSM 16511] gi|319419448|gb|ADV46558.1| tRNA guanosine-2'-O-methyltransferase [Nitratifractor salsuginis DSM 16511] Length = 217 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 2/154 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL--AKSASGALEHI 187 + L + LD V+D N+ A++R+A A I + + A L Sbjct: 24 KQPCLQIFLDDVHDSRNMSAVIRTADAVGVLDIFYARNNPQHVPVHTLVTQGAHRWLRRH 83 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +K + ++ L+LG E +G+ P+ Sbjct: 84 RIPYEERAEFLRKKREEGMQIVVTHLEEASLDFRDVDYTRPTMLVLGNEREGVSPEVLAE 143 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 A+ + M G++++LN+S AAA+ LY + Sbjct: 144 ASHSVIIPMHGMVQSLNISVAAALILYEAERQRK 177 >gi|237713266|ref|ZP_04543747.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262406593|ref|ZP_06083142.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647301|ref|ZP_06724896.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294809639|ref|ZP_06768330.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] gi|229446733|gb|EEO52524.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262355296|gb|EEZ04387.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637377|gb|EFF55800.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294443158|gb|EFG11934.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] Length = 254 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 82/263 (31%), Gaps = 18/263 (6%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 A L +N K + S K + + G V L L AT + Sbjct: 2 ASLSKN--KIKFIHSLELK-KIRKEERVFLAEGPKLVGDLL--GHFPCRFLAATPSWFQE 56 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 + V + + + Q + S L + LD Sbjct: 57 HPGIDAS----ELVEVSQEDLSR-ASLLKTPQQVLAIFEQPQYTLAPEAVRSSLCLALDD 111 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R A F + II ++ + ++ G + + S Sbjct: 112 VQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHYTSLP----D 167 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-- 258 + S G + + K + ++ +++G EG G+ + ++ Sbjct: 168 FIRSLGDTPVFGTFLDGKNMYEQPLTANGLIVMGNEGNGIGKEVATLINRKLYIPNYPAG 227 Query: 259 --IIKALNVSNAAAVALYITQNH 279 ++LNV+ A AV + Sbjct: 228 QETSESLNVAIATAVICAEFRRQ 250 >gi|217033500|ref|ZP_03438929.1| hypothetical protein HP9810_905g19 [Helicobacter pylori 98-10] gi|216944025|gb|EEC23456.1| hypothetical protein HP9810_905g19 [Helicobacter pylori 98-10] Length = 227 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + LN+ K+ ++ +K +L + L P + + K Sbjct: 4 VIYGKQVLMRILNSHQEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ L V+ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLAKVELPLALPLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + ++ T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|46911829|emb|CAG18627.1| putative tRNA methyltransferase [Photobacterium profundum SS9] Length = 267 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ P+N+ AI+R+A A + + + SA Sbjct: 49 RQPDLTVCMEEVHKPNNVSAIIRTADAVGIHKV-HAVWPKENMRVLSHTSAGARNWVELD 107 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + Q SD+ A+ILG E G+ + A Sbjct: 108 THDNMVDAITQLKAQGMQILATNLSDTAIDFRDVDYTKPTAIILGGEKNGITAEALAQAD 167 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 168 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 198 >gi|269925433|ref|YP_003322056.1| tRNA guanosine-2'-O-methyltransferase [Thermobaculum terrenum ATCC BAA-798] gi|269789093|gb|ACZ41234.1| tRNA guanosine-2'-O-methyltransferase [Thermobaculum terrenum ATCC BAA-798] Length = 212 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 50/153 (32%), Gaps = 2/153 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +VL++V+DPHN+ A+LRS A + S S Sbjct: 22 RQPDLTVVLENVHDPHNVSAVLRSCDAVGVLAVHLVYTIEEFPDLSKNVSGSALKWLEII 81 Query: 190 IRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 L AL+ G E +G+ + Sbjct: 82 KHKDIQDCYDTLRSQGMTIYTTYLADPQRSHDLYSLDLTKPTALVFGNEQRGVSEEASRL 141 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LN+S A AV LY Sbjct: 142 ADGNFVIPMMGMVQSLNISVACAVTLYEALRQR 174 >gi|229820795|ref|YP_002882321.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM 12333] gi|229566708|gb|ACQ80559.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM 12333] Length = 267 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 4/240 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 +Y ++ ++R+ + + A+ R L LA + Sbjct: 16 EYTRLTDVRLRTRYEPEHGLYMAESSTVIRRAVAAGHRP-RSFLMAPRWLADMTEVTTAF 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV ++++ G LA P L D + ++ + VL+ V D N+G Sbjct: 75 PEAPVFVADEALLEQVTGFHLHRGALAAMHRPPLPAARDLLAGARRVAVLEDVVDHTNVG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 A+ RSA D ++ T R + + + G + +P+ RI + ++ GF Sbjct: 135 AMFRSAAGLGVDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIEEWPAGMDELRGAGFT 194 Query: 209 TIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 L+ E +++AL+LG EG GL P T A + + M G + +LNV Sbjct: 195 VAALALADDAVTLDELASSPPERLALVLGTEGHGLAPTTVAAADVVVRIPMTGGVDSLNV 254 >gi|242310426|ref|ZP_04809581.1| RNA methyltransferase [Helicobacter pullorum MIT 98-5489] gi|239522824|gb|EEQ62690.1| RNA methyltransferase [Helicobacter pullorum MIT 98-5489] Length = 228 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 74/224 (33%), Gaps = 5/224 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG H V L I + K +K + + + Sbjct: 2 VVYGKHIVELILLKYQYLIENIYLAKEVDKSFFGLLKKTKKQIIKL--DAKKAQAMARGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG LE PL ++ ++VL ++D N+G+I RSA A DGI+ Sbjct: 60 NHQGYLLEIKPLEVLEFSKIKEMDFVLVLCGISDVGNLGSIFRSAYALGVDGIVVCGIKD 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + VL S+ + + + Q + K Sbjct: 120 FKQEGVLRASSGA---MLGMPFCVVHNPLDVINELKQSDFTLFGTSMQGKDLQNALSGKK 176 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+EG GL K + M +LNV A A+ + Sbjct: 177 ALFLGSEGHGLSNKILAKMDYNLTIPMKREFDSLNVGVAGAILI 220 >gi|299140862|ref|ZP_07034000.1| RNA methyltransferase, TrmH family [Prevotella oris C735] gi|298577828|gb|EFI49696.1| RNA methyltransferase, TrmH family [Prevotella oris C735] Length = 250 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 16/257 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K ++ Q G V L + L+AT+ LA P Sbjct: 6 KIKFIKSLQLK-KNREQTRLFIAEGHKLVEELLAMS--RAHTLVATQEWLANHS----AP 58 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 V V + K+ + Q L L P + A+ S L ++LD + DP N+G Sbjct: 59 PADEVIEVTSDELRKVSLLQHPQQVLGLF--PFFASDTHAINTSTLSLMLDGIQDPGNLG 116 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I ++ + + + ++ G++ + + Q Sbjct: 117 TIIRIADWFGINDIYCSQETADMYNPKVIQATMGSITRVRLHYGALEPMLRQ---LPADF 173 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264 I + + E + +I+G EG G+ + ++ + ++LN Sbjct: 174 PIYGTLLEGNDIYSEQLSAHGLIIMGNEGNGISAQVRQMVNCPLLIPNYPPNTPTAESLN 233 Query: 265 VSNAAAVALYITQNHFA 281 V+ A A+ + Sbjct: 234 VAIATAITCAEFRRRIK 250 >gi|298484410|ref|ZP_07002568.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22] gi|299145878|ref|ZP_07038946.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23] gi|298269434|gb|EFI11037.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22] gi|298516369|gb|EFI40250.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23] Length = 254 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 83/263 (31%), Gaps = 18/263 (6%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 A L +N K + S K + + G V L L AT + Sbjct: 2 ASLSKN--KIKYIHSLELK-KIRKEERVFLAEGPKLVGDLL--GHFPCRFLAATPSWFQE 56 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 + V + + + Q + S L + LD Sbjct: 57 HPGIDAS----ELVEVSQEDLSR-ASLLKTPQQVLAIFEQPQYTLDPEAVRSSLCLALDD 111 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R A F + II ++ + ++ G + + S Sbjct: 112 VQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHYTSLP----D 167 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-- 258 + S G + + K + ++ + +++G EG G+ + ++ Sbjct: 168 FIRSLGDTPVFGTFLDGKNMYEQPLSANGLIVMGNEGNGIGKEVATLINRKLYIPNYPAG 227 Query: 259 --IIKALNVSNAAAVALYITQNH 279 ++LNV+ A AV + Sbjct: 228 QETSESLNVAIATAVICAEFRRQ 250 >gi|251791702|ref|YP_003006423.1| tRNA guanosine-2'-O-methyltransferase [Dickeya zeae Ech1591] gi|247540323|gb|ACT08944.1| tRNA guanosine-2'-O-methyltransferase [Dickeya zeae Ech1591] Length = 230 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R L + ++ V+ PHN+ A++R+A A + + +++ +A Sbjct: 14 NNRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQV-HAVWPTSRMKTLVSTAAGSNSWVQ 72 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + S ++LG E G+ Sbjct: 73 VKTHRTIQDAVGHLKMQGMQILATNLSAGAVDFRDVDYTRPTCILLGQEKTGISADALAL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 133 ADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|215488946|ref|YP_002331377.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312967980|ref|ZP_07782191.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 2362-75] gi|215267018|emb|CAS11463.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312287239|gb|EFR15148.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 2362-75] Length = 229 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T + A R L + ++ V+ PHN+ AI+R+A A + Sbjct: 1 MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + +A + SD+ + +++G Sbjct: 60 MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILTTHLSDNAVDFREIDYTRPTCILMG 119 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|296082972|emb|CBI22273.3| unnamed protein product [Vitis vinifera] Length = 369 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 63/164 (38%), Gaps = 1/164 (0%) Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 +E + R+ + +V++ + D N+ A RSA A + S Sbjct: 153 YIMEVRKERFRNVVKSRSYSVCLVVEGLCDFGNVSAAFRSADALGFQSVHVVSCDSSKRY 212 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALI 232 + GA + + ++ + + + S G++ ++ A++ Sbjct: 213 KDNRHVSMGAEKWLDIELWNSTQECFEVLKSRGYRIATTHVGMDAVSIYDMDWTCPTAIV 272 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +G E +G+ + E + + M G++ + NVS AA + ++ Sbjct: 273 VGNENRGISDEALELSDLHCSIPMKGMVDSFNVSVAAGILMHHA 316 >gi|291619492|ref|YP_003522234.1| TrmH [Pantoea ananatis LMG 20103] gi|291154522|gb|ADD79106.1| TrmH [Pantoea ananatis LMG 20103] Length = 233 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ A++R+A A + S + SA Sbjct: 16 RQHDLTVCMEQVHKPHNVSAVIRTADAVGIHEV-HAVWPSQRMRTQASASAGSNSWVNVV 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S S + +++G E G+ + A Sbjct: 75 THRSINDAISHLKTQNMQILATNLSADAVDFREIDYTKPTCILMGQEKTGITDEALALAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 RHIIIPMVGMVQSLNVSVASALILYEAQRQR 165 >gi|160884561|ref|ZP_02065564.1| hypothetical protein BACOVA_02546 [Bacteroides ovatus ATCC 8483] gi|293373263|ref|ZP_06619623.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|156110300|gb|EDO12045.1| hypothetical protein BACOVA_02546 [Bacteroides ovatus ATCC 8483] gi|292631786|gb|EFF50404.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] Length = 254 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 83/263 (31%), Gaps = 18/263 (6%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 A L +N K + S K + + G V L L AT + Sbjct: 2 ASLSKN--KIKYIHSLELK-KIRKEERVFLAEGPKLVGDLL--GHFPCRFLAATPSWFQE 56 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 + V + + + Q + S L + LD Sbjct: 57 HPGIDAN----ELVEVSQEDLSR-ASLLKTPQQVLAIFEQPQYTLDPEAVRSSLCLALDD 111 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R A F + II ++ + ++ G + + S Sbjct: 112 VQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHYTSLP----D 167 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-- 258 + S G + + K + ++ + +++G EG G+ + ++ Sbjct: 168 FIRSLGDTPVFGTFLDGKNMYEQPLSANGLIVMGNEGNGIGKEVATLINRKLYIPNYPAG 227 Query: 259 --IIKALNVSNAAAVALYITQNH 279 ++LNV+ A AV + Sbjct: 228 QETSESLNVAIATAVICAEFRRQ 250 >gi|297181103|gb|ADI17301.1| rRNA methylases [uncultured actinobacterium HF0070_17F14] gi|297181194|gb|ADI17389.1| rRNA methylases [uncultured Verrucomicrobiales bacterium HF0070_30L02] Length = 254 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 103/255 (40%), Gaps = 11/255 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDW 83 + +++ + ++ + G TV AL+ + ++ ++ + + Sbjct: 8 QNPRVAELRRLIGRRSSR--SGDIVIEGPRTVGEALDAECQPSVVIIPEHAEDDASVVAV 65 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + LP V +++ LA+ P +++VL + D Sbjct: 66 ERRLPASVEFLLVRDHVFERLTPSTTPQPMLAIVARP----VASLPAAPSVVLVLAGIGD 121 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G ++R+A A + + + ++++G++ +P ++ L D + + Sbjct: 122 PGNLGTLVRAADAVA-ADAVVVVGGADPWGPKAVRASAGSMLRVPIVQYDQLDDTVDALR 180 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G +G +P +Q + + +A+++G+E GL + AH+ MPG ++L Sbjct: 181 EAGVTVVGTDVTGGEPFDQGVLDRPVAIVMGSEPHGLDRGV--DLDAWAHIAMPGRTESL 238 Query: 264 NVSNAAAVALYITQN 278 NV+ A + LY Sbjct: 239 NVAMAGTLLLYEASR 253 >gi|144575297|gb|AAZ53518.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448] Length = 251 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 99/249 (39%), Gaps = 13/249 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K++ K ++ + + G + +A+N + ++L TKN + + Sbjct: 10 NNPIIKEIGKLKLK-KYRNLWNKFVVEGEKDIESAINAG--LVLRILTTKNNVEKYQKV- 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V V + ++K+ ++ + +A+ + D + + +L++ L+++ +P Sbjct: 66 ----NVDVVIVSQKILEKLSQHKSPSEVIAVCKSKKQRKIKDFLDSKRLVI-LENIQNPG 120 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+ +F D + + ++ +K A Y + Sbjct: 121 NLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAI--FMANIYFLKNISDFFKFGPKQE 178 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + I +I G EGKG+ K + A ++ + ++LN+ Sbjct: 179 IIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPI--NFESLNI 236 Query: 266 SNAAAVALY 274 ++A A+ + Sbjct: 237 ASANAIFCH 245 >gi|323160738|gb|EFZ46674.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli E128010] Length = 229 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T + A R L + ++ V+ PHN+ AI+R+A A + Sbjct: 1 MNPTRYAHICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + +A + SD+ + +++G Sbjct: 60 MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|303248118|ref|ZP_07334383.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio fructosovorans JJ] gi|302490517|gb|EFL50425.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio fructosovorans JJ] Length = 196 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 67/151 (44%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L +V+++++DPHN+ AILRS AF + + + S S Sbjct: 20 RQTDLTLVINNIHDPHNVSAILRSCDAFGIHRVHLLYTDTAFPALGKKSSGSAKKWVETT 79 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + A S++ +PL++ K+A+ILG E +G+ + Sbjct: 80 RHPDAASLASSLKGQGFALVATSFSETARPLQEWDLTGKVAIILGNEHRGVDEELAPYVD 139 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ M G++++LNVS AAAV LY Sbjct: 140 GALYIPMQGMVQSLNVSVAAAVILYEGFRQR 170 >gi|90581394|ref|ZP_01237189.1| putative tRNA methyltransferase [Vibrio angustum S14] gi|90437371|gb|EAS62567.1| putative tRNA methyltransferase [Vibrio angustum S14] Length = 241 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ P+N+ AI+R+A A + + SA Sbjct: 16 RQPDLTVCMEEVHKPNNVSAIIRTADAVGVHKV-HAVWPKEGMKVLSHTSAGARNWVELD 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S + SD+ A+ILG E G+ + A Sbjct: 75 THDSMVEAVQALKDQGMQVLATNLSDTAIDFRDVDYTKPTAIILGGEKNGITAEALAMAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 165 >gi|300822421|ref|ZP_07102561.1| RNA methyltransferase, TrmH family [Escherichia coli MS 119-7] gi|300907694|ref|ZP_07125322.1| RNA methyltransferase, TrmH family [Escherichia coli MS 84-1] gi|300923462|ref|ZP_07139502.1| RNA methyltransferase, TrmH family [Escherichia coli MS 182-1] gi|300927918|ref|ZP_07143477.1| RNA methyltransferase, TrmH family [Escherichia coli MS 187-1] gi|301303886|ref|ZP_07210005.1| RNA methyltransferase, TrmH family [Escherichia coli MS 124-1] gi|301325334|ref|ZP_07218841.1| RNA methyltransferase, TrmH family [Escherichia coli MS 78-1] gi|309797607|ref|ZP_07691995.1| RNA methyltransferase, TrmH family [Escherichia coli MS 145-7] gi|300400630|gb|EFJ84168.1| RNA methyltransferase, TrmH family [Escherichia coli MS 84-1] gi|300420289|gb|EFK03600.1| RNA methyltransferase, TrmH family [Escherichia coli MS 182-1] gi|300464010|gb|EFK27503.1| RNA methyltransferase, TrmH family [Escherichia coli MS 187-1] gi|300525068|gb|EFK46137.1| RNA methyltransferase, TrmH family [Escherichia coli MS 119-7] gi|300840849|gb|EFK68609.1| RNA methyltransferase, TrmH family [Escherichia coli MS 124-1] gi|300847861|gb|EFK75621.1| RNA methyltransferase, TrmH family [Escherichia coli MS 78-1] gi|308118794|gb|EFO56056.1| RNA methyltransferase, TrmH family [Escherichia coli MS 145-7] gi|315254039|gb|EFU34007.1| RNA methyltransferase, TrmH family [Escherichia coli MS 85-1] gi|324019690|gb|EGB88909.1| RNA methyltransferase, TrmH family [Escherichia coli MS 117-3] Length = 218 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 5 RQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASAAAGSNSWVQVK 63 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + SD+ + +++G E G+ + A Sbjct: 64 THRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALAD 123 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 124 QDIIIPMIGMVQSLNVSVASALILYEAQRQR 154 >gi|256391520|ref|YP_003113084.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM 44928] gi|256357746|gb|ACU71243.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM 44928] Length = 269 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 78/240 (32%), Gaps = 5/240 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + G + AL LL+ K A A + Sbjct: 17 DYSGLTDVELRKVREPAEGLFLAEGEKVIRRALAAGYPMRSTLLSPKWAQAMRPLIEEV- 75 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV ++ + G LA +S + ++ ++V++ + + N+G Sbjct: 76 -DAPVYVGSEALLEAVTGFHVHRGALASMQRTPVSEAGAVLAAAKRVVVMEDIVNHTNLG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASG---ALEHIPYIRISNLTDALQKMHSW 205 AI RSA A D + T + + + G AL + L + Sbjct: 135 AIFRSAAALGMDAAVLTPSCADPLYRRSVRVSMGTVFALPYARLDSWPGGLTTLAEHGFR 194 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + DK+AL+LG EG GL A + M + +LNV Sbjct: 195 TIALTPGPTAIDLRDLRFGPEDKVALLLGTEGDGLSDPALAAADMRVRIPMTAGVDSLNV 254 >gi|134101781|ref|YP_001107442.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|291009830|ref|ZP_06567803.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|133914404|emb|CAM04517.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 235 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 84/228 (36%), Gaps = 7/228 (3%) Query: 58 SAALNN---PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 AL + + ++ AT + D PV+ V + + + Sbjct: 2 REALAAHAEGATAVREVFATGDPRHDELLDTARAASVPVRLVTERAAASLSETVTPQGLV 61 Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 A+ P + L+ VL ++DP N G ++R A A ++ + + Sbjct: 62 AVCDLPATAVADALAARPALVAVLVGISDPGNAGTVVRVADAAGAGAVLFAGDTVDAFNG 121 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND----KIA 230 ++++G+L H+P R +++ G + +G + L+ A Sbjct: 122 KAVRASTGSLFHLPVARDRDVSAVFAACREAGLRLVGADGHATDDLDSADLGGALAAPTA 181 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + G+E GL + + G ++LN++ AAAV LY + Sbjct: 182 WVFGSEAHGLPGDVTAQLDGTLRVPLYGRAESLNLATAAAVCLYASAR 229 >gi|145510039|ref|XP_001440955.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124408189|emb|CAK73558.1| unnamed protein product [Paramecium tetraurelia] Length = 261 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 56/251 (22%), Positives = 102/251 (40%), Gaps = 21/251 (8%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-----RLDWDANLPHPFP-- 92 SR +SQ +LYG++ V +AL R QL + R+ N Sbjct: 8 SRFSSQKSYDYLYGINPVMSALYANKRSFTQLYVNQTQQNDYINPRVSNILNRAQSLKLD 67 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V+ +P +++ + + + L N LL D V DP N GAILR Sbjct: 68 VQMIPKNKLERYCSNDHHQNVILKCSKLNYCNQLPDESNFVLL---DSVQDPQNFGAILR 124 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 + +I K+ S ++K+++GALE + NL + +++ Sbjct: 125 VCFFLGINTVIVEKKGQCPLSPTVSKTSAGALELMNIFETDNLANFVKQRKHEFQVIGSG 184 Query: 213 SSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGI-------IKA 262 + P+++ K+ K +I G+E G+R + + ++ ++ M + + Sbjct: 185 FESNSIPIDEFQKDQNKPKKIIIFGSESSGIRTELFKQCDTIVNI-MTSRHTFPETLVDS 243 Query: 263 LNVSNAAAVAL 273 LNVS +A + L Sbjct: 244 LNVSVSAGIIL 254 >gi|327395801|dbj|BAK13223.1| tRNA guanosine-2'-O-methyltransferase TrmH [Pantoea ananatis AJ13355] Length = 233 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ A++R+A A + S + SA Sbjct: 16 RQHDLTVCMEQVHKPHNVSAVIRTADAVGIHEV-HAVWPSQRMRTQASASAGSNSWVNVV 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S S + +++G E G+ + A Sbjct: 75 THRSINDAISHLKTQNMQILATNLSADAVDFREIDYTKPTCILMGQEKTGITDEALALAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 RHIIIPMVGMVQSLNVSVASALILYEAQRQR 165 >gi|227883841|ref|ZP_04001646.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 83972] gi|300919781|ref|ZP_07136256.1| RNA methyltransferase, TrmH family [Escherichia coli MS 115-1] gi|300950017|ref|ZP_07163967.1| RNA methyltransferase, TrmH family [Escherichia coli MS 116-1] gi|300955360|ref|ZP_07167739.1| RNA methyltransferase, TrmH family [Escherichia coli MS 175-1] gi|300984896|ref|ZP_07177184.1| RNA methyltransferase, TrmH family [Escherichia coli MS 45-1] gi|301047441|ref|ZP_07194520.1| RNA methyltransferase, TrmH family [Escherichia coli MS 185-1] gi|301644318|ref|ZP_07244320.1| RNA methyltransferase, TrmH family [Escherichia coli MS 146-1] gi|227839119|gb|EEJ49585.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 83972] gi|300300649|gb|EFJ57034.1| RNA methyltransferase, TrmH family [Escherichia coli MS 185-1] gi|300317732|gb|EFJ67516.1| RNA methyltransferase, TrmH family [Escherichia coli MS 175-1] gi|300408325|gb|EFJ91863.1| RNA methyltransferase, TrmH family [Escherichia coli MS 45-1] gi|300413134|gb|EFJ96444.1| RNA methyltransferase, TrmH family [Escherichia coli MS 115-1] gi|300450631|gb|EFK14251.1| RNA methyltransferase, TrmH family [Escherichia coli MS 116-1] gi|301077356|gb|EFK92162.1| RNA methyltransferase, TrmH family [Escherichia coli MS 146-1] gi|315285421|gb|EFU44866.1| RNA methyltransferase, TrmH family [Escherichia coli MS 110-3] gi|315292920|gb|EFU52272.1| RNA methyltransferase, TrmH family [Escherichia coli MS 153-1] gi|315296994|gb|EFU56274.1| RNA methyltransferase, TrmH family [Escherichia coli MS 16-3] gi|324008107|gb|EGB77326.1| RNA methyltransferase, TrmH family [Escherichia coli MS 57-2] Length = 218 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 5 RQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASAAAGSNSWVQVK 63 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + SD+ + +++G E G+ + A Sbjct: 64 THRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALAD 123 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 124 QDIIIPMIGMVQSLNVSVASALILYEAQRQR 154 >gi|225452930|ref|XP_002278944.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 372 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 63/164 (38%), Gaps = 1/164 (0%) Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 +E + R+ + +V++ + D N+ A RSA A + S Sbjct: 156 YIMEVRKERFRNVVKSRSYSVCLVVEGLCDFGNVSAAFRSADALGFQSVHVVSCDSSKRY 215 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALI 232 + GA + + ++ + + + S G++ ++ A++ Sbjct: 216 KDNRHVSMGAEKWLDIELWNSTQECFEVLKSRGYRIATTHVGMDAVSIYDMDWTCPTAIV 275 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +G E +G+ + E + + M G++ + NVS AA + ++ Sbjct: 276 VGNENRGISDEALELSDLHCSIPMKGMVDSFNVSVAAGILMHHA 319 >gi|30047088|gb|AAH50614.1| RNA methyltransferase like 1 [Homo sapiens] Length = 420 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 48/315 (15%), Positives = 95/315 (30%), Gaps = 52/315 (16%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 Y K R + + + + + L G +S AL + + Sbjct: 92 LRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEY 151 Query: 78 LARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLL 135 L L D VK + +V + V A + P + LL Sbjct: 152 LKELPVDKLKGVSLIKVKFEDIKDWSDLVTPQGVMGIFAKPDHVKMTYPKTQLQHSLPLL 211 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P I Sbjct: 212 LICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPIINNLEW 271 Query: 196 -----------------------------------TDALQKMHSWGFQ-----------T 209 Q++ + Sbjct: 272 ETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQRVMKFHKYEEEEDVETGASQ 331 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNV 265 L + + + A+++G E G+ ++ + A + + + +LN Sbjct: 332 DWLPHVEVQSYDSDWTEAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSLNS 391 Query: 266 SNAAAVALYITQNHF 280 + AA++ L+ + Sbjct: 392 AMAASILLFEGKRQL 406 >gi|317485211|ref|ZP_07944092.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6] gi|316923502|gb|EFV44707.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6] Length = 286 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 57/281 (20%), Positives = 99/281 (35%), Gaps = 11/281 (3%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 I S R + +++ S S S+ E L GV V L +I + Sbjct: 2 ITEKNTSPRKAFRSAPKAFEQDASLENASCSDSKEEQAVLSGVKPVLELLEREPERIDAV 61 Query: 72 LATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP---- 124 L K ++ D Q++D++ L A Sbjct: 62 LVRKGKRSQDTDRILDLCRTAKVRFTLADAQSLDRLCPAGHQGVVARLFEAGFTEFADLL 121 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 T L++VLD V DP N G + R+ A G++ + A ++A+GAL Sbjct: 122 TDATDAPLPLILVLDQVQDPGNAGTLARTLYAMGGAGLVIPRHNGTFLGAGARRAAAGAL 181 Query: 185 EHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 E +P ++ N+ A + + + + L+LG E G+RP+ Sbjct: 182 ERLPVAKVMNIARALDEARDAGFLIYGAAFGEGSLDAFTTRLHTPALLVLGNEEHGIRPQ 241 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVA--LYITQNHFAK 282 + + H+ M +LNV+ A + + + H K Sbjct: 242 VAKRCHHLLHIPMLRTFDSLNVAQAGGILTSCF-ARQHLEK 281 >gi|149919873|ref|ZP_01908349.1| RNA methyltransferase, TrmH family, group 3 [Plesiocystis pacifica SIR-1] gi|149819320|gb|EDM78753.1| RNA methyltransferase, TrmH family, group 3 [Plesiocystis pacifica SIR-1] Length = 325 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 106/243 (43%), Gaps = 23/243 (9%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVGKEA 109 G V L ++ +LL + ++ V + D ++G Sbjct: 80 GERAVVELLRASPTRVRRLLLEEGRRFESLEALAAEALGERVTIERVEREIFDDLIG-PG 138 Query: 110 VHQGLALETAPLLSPTLD----------------AVRNSQLLMVLDHVNDPHNIGAILRS 153 + +G+ T P + R +++++LD V DPHN+GA++R+ Sbjct: 139 LARGVLAVTRPPRRWDFEALLEGGPEAEGGEAVRTRRGHRIIVLLDGVQDPHNLGAVIRN 198 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A F ++ + + SAV +S++GA E +P +++N+ AL++ + G + + Sbjct: 199 AEFFGATAVVWGQDRAAPLSAVAVRSSAGATERLPLGQVTNVARALEQAKASGTWWVVGT 258 Query: 214 SDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + E D + L+LG+E +G+R T+E + + G + +LNVS A A Sbjct: 259 VVDEGTPVHEFAQDPPSDMILVLGSEERGMRRLTRERCDFLVTIARGGSLGSLNVSAAGA 318 Query: 271 VAL 273 VAL Sbjct: 319 VAL 321 >gi|144227486|gb|AAZ44231.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J] Length = 251 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 100/257 (38%), Gaps = 15/257 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K++ K ++ + + G + +A+N + ++L TKN + + Sbjct: 10 NNPIIKEIGKLKLK-KYRNLWNKFVVEGEKDIESAINAG--LVLRILTTKNNVEKYQKV- 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V V + ++K+ ++ + +A+ + D + + +L++ L+++ +P Sbjct: 66 ----NVDVVIVSQKILEKLSQHKSPSEVIAVCKSKKQRKIKDFLDSKRLVI-LENIQNPG 120 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+ +F D + + ++ +K A Y + Sbjct: 121 NLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAI--FMANIYFLKNISDFFKFGPKQE 178 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + I +I G EGKG+ K + A ++ + ++LN+ Sbjct: 179 IIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPI--NFESLNI 236 Query: 266 SNAAAVALYITQNHFAK 282 ++A A+ + K Sbjct: 237 ASANAIFCHFF--QLKK 251 >gi|319957276|ref|YP_004168539.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM 16511] gi|319419680|gb|ADV46790.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM 16511] Length = 260 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 83/236 (35%), Gaps = 6/236 (2%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + + V L + LL T L + V + +++ Sbjct: 26 DKDGSFVADSPRVVGQLLGSGLE-FKSLLCTPEYLEKERERIEAAGVPKVYLGSRELLER 84 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 IVG H + +++L +N+ N+GAI RSA A G + Sbjct: 85 IVGHSIHHNV---MAHLKRPTNVPLEELPDRVVMLTRLNNLENVGAIARSAAALGVGGYV 141 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL--E 221 + ++G + + ++ ++++ G+ + + + Sbjct: 142 VPSSGPHPYGRRAIRVSTGHVTRLKVHCYEDILQTMERLRELGYTLLAAEATPEAVPLAR 201 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + ALILG E +G+ + E ++ + M IK+ NV+ A A+ +Y + Sbjct: 202 FGPVPKRWALILGNEEEGVPEEVLEKCDAVLQIEMEPGIKSFNVATAGAIIMYRLR 257 >gi|307314264|ref|ZP_07593872.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli W] gi|306906087|gb|EFN36606.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli W] gi|315062939|gb|ADT77266.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli W] gi|323376468|gb|ADX48736.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli KO11] Length = 229 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T + A R L + ++ V+ PHN+ AI+R+A A + Sbjct: 1 MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + +A + SD+ + +++G Sbjct: 60 MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREVDYTRPTCILMG 119 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|57505789|ref|ZP_00371714.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter upsaliensis RM3195] gi|57015819|gb|EAL52608.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter upsaliensis RM3195] Length = 229 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG L I +L K + + F +K + ++ + + + Sbjct: 2 IVYGKQVFFYILQKHKEMINELYLAKECD-KATFSLIAKAGFKIKKLDFKS-AQALARGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG ++ ++ S+ +++L ++D N+GAI+R+A A DG++ + Sbjct: 60 NHQGFLMDIKEFDFVPFCELKKSEFIVMLCGISDVGNMGAIIRTAYALGVDGLLFIGKNL 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 E + +S+SGA +P ++ AL ++ F+ G ++ K Sbjct: 120 AQE--SIVRSSSGAALDLPICLSNDALSALNELKQMEFKLYGADGKGREVHHLTFPKGKK 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 LI+G+EG GL K + + M +LNVS A A+ Sbjct: 178 VLIMGSEGFGLSSKIIQKCDECVGIAMQNDFDSLNVSAAFAILC 221 >gi|293393635|ref|ZP_06637945.1| tRNA guanosine-2'-O-methyltransferase [Serratia odorifera DSM 4582] gi|291423970|gb|EFE97189.1| tRNA guanosine-2'-O-methyltransferase [Serratia odorifera DSM 4582] Length = 220 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + L+ V+ PHN+ AI+R+A A + + +++ +A Sbjct: 5 RQPDLTVCLEQVHKPHNVSAIIRTADAVGVHQV-HAVWPTTRMRTLVSSAAGSNSWVNVK 63 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + S ++LG E G+ + + A Sbjct: 64 THRTIGEAVGHLKSQGMQILATNLSARAVDFRDIDYTRPTCILLGQEKSGISEEALQLAD 123 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 124 RDIIIPMIGMVQSLNVSVASALILYEAQRQR 154 >gi|194431220|ref|ZP_03063513.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae 1012] gi|194420675|gb|EDX36751.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae 1012] Length = 229 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T + A R L + ++ V+ PHN+ AI+R+A A + Sbjct: 1 MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGNRMRT 59 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + +A + SD+ + +++G Sbjct: 60 MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|313123601|ref|YP_004033860.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280164|gb|ADQ60883.1| TRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 291 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 49/295 (16%), Positives = 101/295 (34%), Gaps = 24/295 (8%) Query: 1 MNLISKKKS-EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59 M+ I ++ + +I + D + + + + Sbjct: 1 MDRIDRENNLIRINAFDDPRLK-------LFTDYNEAQLFHYYEPEAGIFIAESPKVIER 53 Query: 60 ALNNPSRKIFQLLATK-------NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 A+ I L+ K + L + + FP+ + ++ G + Sbjct: 54 AIRAGYEPIAMLVEEKALERDLADFDRELAANHDHLLDFPIFVAQSDLLRQLPGYNLLRG 113 Query: 113 GLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 + + + VL+ V +P N+GAI RSA A DG++ T S Sbjct: 114 AICAFRRKKRPSLREFAAALPKHARVGVLESVVNPTNVGAIFRSAAALGMDGVLITTDSS 173 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDAL------QKMHSWGFQTIGLSSDSKKPLEQE 223 + + G + +P+ + Q++ + Sbjct: 174 DPLYRRSGRVSMGTVFQVPWTYLDQKLWREKGVASLQELGFKTAAMALRDNTVDIDDPVL 233 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + D++A+ILG+EG GL P+T + + M + +LNV+ A+A+A + + Sbjct: 234 KEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKK 288 >gi|54020405|ref|YP_115751.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 232] gi|53987578|gb|AAV27779.1| rRNA methylase [Mycoplasma hyopneumoniae 232] Length = 252 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 99/249 (39%), Gaps = 13/249 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K++ K ++ + + G + +A+N + ++L TKN + + Sbjct: 11 NNPIIKEIGKLKLK-KYRNLWNKFVVEGEKDIESAINAG--LVLRILTTKNNVEKYQKV- 66 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 V V + ++K+ ++ + +A+ + D + + +L++ L+++ +P Sbjct: 67 ----NVDVVIVSQKILEKLSQHKSPSEVIAVCKSKKQRKIKDFLDSKRLVI-LENIQNPG 121 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+ +F D + + ++ +K A Y + Sbjct: 122 NLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAI--FMANIYFLKNISDFFKFGPKQE 179 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + I +I G EGKG+ K + A ++ + ++LN+ Sbjct: 180 IIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPI--NFESLNI 237 Query: 266 SNAAAVALY 274 ++A A+ + Sbjct: 238 ASANAIFCH 246 >gi|327314524|ref|YP_004329961.1| TrmH family RNA methyltransferase [Prevotella denticola F0289] gi|326944905|gb|AEA20790.1| RNA methyltransferase, TrmH family [Prevotella denticola F0289] Length = 242 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 35/255 (13%), Positives = 78/255 (30%), Gaps = 24/255 (9%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K + + G VS L + ++L + ++ + + Sbjct: 6 RTKLIRSLETK-KGREKAGLFVAEGPKVVSDLL-HGGFLAEEVLEDIEDIRKVSFLKHPQ 63 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + +P + + QL++ LD V DP N+G Sbjct: 64 SVLGIFKMPEEADETSKDYSKT---------------FHEHIEGQLVLALDGVQDPGNLG 108 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F D I + + + + ++ G++ + + + Sbjct: 109 TIIRIADWFGIDDIFCSHETADCWNPKVVQATMGSIARVKLHYLDLNLLIDNLPIDYPVY 168 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALN 264 L +++G EG G+ P + + ++LN Sbjct: 169 ATLLDGKDLYTQP---LTAHGMIVMGNEGNGITPLLRTKINRKLLIPNYHAGREAAESLN 225 Query: 265 VSNAAAVALYITQNH 279 V+ A ++ + Sbjct: 226 VAVATSIVCAEFRRR 240 >gi|62897359|dbj|BAD96620.1| RNA methyltransferase like 1 variant [Homo sapiens] Length = 420 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 46/317 (14%), Positives = 93/317 (29%), Gaps = 56/317 (17%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 Y K R + + + + + L G +S AL + + Sbjct: 92 LRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEY 151 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQ 133 L L D + V + I + + P + P + Sbjct: 152 LKELPVD--KLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQHSLP 209 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL++ D++ DP N+G ILRSA C ++ TK + ++ GA +P I Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDVWEPKVLRAGMGAHFRMPIINNL 269 Query: 194 NL-----------------------------------TDALQKMHSWGFQ---------- 208 Q++ + Sbjct: 270 EWETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQRVMKFHKYEEEEDVETGA 329 Query: 209 -TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKAL 263 L + + + A+++G E G+ ++ + A + + + +L Sbjct: 330 SQDWLPHVEVQSYDSDWTEAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSL 389 Query: 264 NVSNAAAVALYITQNHF 280 N + AA++ L+ + Sbjct: 390 NSAMAASILLFEGKRQL 406 >gi|323189442|gb|EFZ74723.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli RN587/1] Length = 229 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T + A R L + ++ V+ PHN+ AI+R+A A + Sbjct: 1 MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + +A + SD+ + +++G Sbjct: 60 MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|331649465|ref|ZP_08350551.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli M605] gi|330909712|gb|EGH38226.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Escherichia coli AA86] gi|331041963|gb|EGI14107.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli M605] Length = 229 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T + A R L + ++ V+ PHN+ AI+R+A A + Sbjct: 1 MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + +A + SD+ + +++G Sbjct: 60 MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|226357312|ref|YP_002787052.1| tRNA guanosine-2-O-methyltransferase [Deinococcus deserti VCD115] gi|226319302|gb|ACO47298.1| putative tRNA guanosine-2-O-methyltransferase (transfer ribonucleate guanosine 2-methyltransferase) [Deinococcus deserti VCD115] Length = 222 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 52/157 (33%), Gaps = 5/157 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L +++D VN PHN+ AI+R+ A ++ + Sbjct: 16 HRQPTLTVLMDEVNKPHNLSAIIRTCDAVGVLEAHAVPPKGGPLASFSGHTYEATSGSAH 75 Query: 189 YIRISNLTDA-----LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + S + ++LGAE G+ + Sbjct: 76 KWVPVHSHTDAVSAVHALQGQGFQVLATHLSQRSVDYREPDYTRPTCVLLGAEKWGVSDE 135 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + M G++++LNVS AAA L+ Q Sbjct: 136 AADAADHNIVIPMFGMVQSLNVSVAAATILFEAQRQR 172 >gi|291085009|ref|ZP_06570899.1| putative tRNA/rRNA methyltransferase [Citrobacter youngae ATCC 29220] gi|291071645|gb|EFE09754.1| putative tRNA/rRNA methyltransferase [Citrobacter youngae ATCC 29220] Length = 246 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 88/244 (36%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 2 RRQRAEETRVYGENACQALFQSRPDAIVRAWFVQSVTPRFKEALRWMAANRKAYHVVDEA 61 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L+ + +PHN+G ++RS Sbjct: 62 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVGQAGAQDCVLALEDIANPHNLGGMMRSCA 120 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I ++ D L G+ + SS Sbjct: 121 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDSIVDVLDDFRHAGYTVVMTSSV 179 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL +K+ L+LG E + L + G ++ LNVS A V L Sbjct: 180 KGKPLFTTTLPEKMVLVLGREREALPEAACSADDLCVAIDGTGNVETLNVSVATGVLLAE 239 Query: 276 TQNH 279 Sbjct: 240 WWRQ 243 >gi|237703445|ref|ZP_04533926.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 3_2_53FAA] gi|226902709|gb|EEH88968.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 3_2_53FAA] Length = 229 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T + A R L + ++ V+ PHN+ AI+R+A A + Sbjct: 1 MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + +A + SD+ + +++G Sbjct: 60 MASAAAGSNSWVQVKTHRTIGDSVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|182413608|ref|YP_001818674.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] gi|177840822|gb|ACB75074.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] Length = 250 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 99/241 (41%), Gaps = 10/241 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKT-VPPQTID 102 +P+ L + G+ V A I +L R+ L + V P ++ Sbjct: 2 KPKELTICGLAAVRAQFAADPGAIKRLYFDYATGRRIGVICRTLAQRKKIYRCVEPAELE 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 K VG H G+ V+ + L+VLD + + HN+GAI R+A Sbjct: 62 K-VGGTLHHGGIVAVVEAPEMREPAAADLTAWVKRCEPLLVLDRIGNAHNLGAIARTAAF 120 Query: 157 FSCDGIITTKRYSP-SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F +I + + S + A G + H+ R+ +L L+ + + G+ IG ++ Sbjct: 121 FGLPRLILPRDPAAAQPSEAAYRVAEGGMTHLELARVDDLPAFLRSLVAAGYDVIGAATR 180 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 P Q IAL+LG E GL + T + + G +++LNVS A AV ++ Sbjct: 181 GGLPQAQSHTGKPIALVLGNEEHGLSAEVAAACTRLVTIPGSGKVESLNVSVAGAVLIWE 240 Query: 276 T 276 Sbjct: 241 L 241 >gi|74190703|dbj|BAE28150.1| unnamed protein product [Mus musculus] Length = 418 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 89/313 (28%), Gaps = 50/313 (15%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 Y K R + + + + + L G ++ AL + + Sbjct: 92 LRYDKAFPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEY 151 Query: 78 LARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLL 135 + L D VK + +V + + + + P L+ Sbjct: 152 VKELPVDKLKDVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDPVKMTYPETPLHHTLPLV 211 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE---------- 185 ++ D++ DP N+G ILRSA C ++ TK + + ++ GA Sbjct: 212 LICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNNVEW 271 Query: 186 -----HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------------- 227 H+P + D D + Sbjct: 272 ETVPNHLPPDTRVYVADNCGHYAQVQMSDKTGDRDWACDRRFLKFHKYEEDLDTKTRKDW 331 Query: 228 ----------------KIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSN 267 +++G E G+ ++ + A + + + +LN + Sbjct: 332 LPKLEVQSYDLDWTGAPAVVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAM 391 Query: 268 AAAVALYITQNHF 280 AA++ L+ + Sbjct: 392 AASILLFEGKRQL 404 >gi|15804192|ref|NP_290231.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 EDL933] gi|15833780|ref|NP_312553.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|16131522|ref|NP_418108.1| tRNA mG18-2'-O-methyltransferase, SAM-dependen [Escherichia coli str. K-12 substr. MG1655] gi|24114921|ref|NP_709431.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str. 301] gi|30065073|ref|NP_839244.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str. 2457T] gi|74314114|ref|YP_312533.1| tRNA guanosine-2'-O-methyltransferase [Shigella sonnei Ss046] gi|82546080|ref|YP_410027.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii Sb227] gi|89110361|ref|AP_004141.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|110807671|ref|YP_691191.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 5 str. 8401] gi|157163132|ref|YP_001460450.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli HS] gi|168748698|ref|ZP_02773720.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4113] gi|168753476|ref|ZP_02778483.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4401] gi|168759772|ref|ZP_02784779.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4501] gi|168766072|ref|ZP_02791079.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4486] gi|168772380|ref|ZP_02797387.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4196] gi|168779807|ref|ZP_02804814.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4076] gi|168785528|ref|ZP_02810535.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC869] gi|168798621|ref|ZP_02823628.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC508] gi|170018119|ref|YP_001723073.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ATCC 8739] gi|170083158|ref|YP_001732478.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|188495946|ref|ZP_03003216.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 53638] gi|191167826|ref|ZP_03029632.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B7A] gi|193063862|ref|ZP_03044949.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E22] gi|194430057|ref|ZP_03062562.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B171] gi|194435953|ref|ZP_03068056.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 101-1] gi|195936212|ref|ZP_03081594.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208806132|ref|ZP_03248469.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4206] gi|208812795|ref|ZP_03254124.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4045] gi|208819105|ref|ZP_03259425.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4042] gi|209398863|ref|YP_002273131.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4115] gi|209921124|ref|YP_002295208.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SE11] gi|217324129|ref|ZP_03440213.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. TW14588] gi|218551178|ref|YP_002384969.1| tRNA guanosine-2'-O-methyltransferase [Escherichia fergusonii ATCC 35469] gi|218556214|ref|YP_002389127.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IAI1] gi|238902742|ref|YP_002928538.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BW2952] gi|253771507|ref|YP_003034338.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038852|ref|ZP_04872904.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 1_1_43] gi|254163579|ref|YP_003046687.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B str. REL606] gi|254795606|ref|YP_003080443.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|260857954|ref|YP_003231845.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|260870381|ref|YP_003236783.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O111:H- str. 11128] gi|261224166|ref|ZP_05938447.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261254776|ref|ZP_05947309.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291285022|ref|YP_003501840.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str. CB9615] gi|293463975|ref|ZP_06664389.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B088] gi|312972063|ref|ZP_07786237.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1827-70] gi|331670492|ref|ZP_08371331.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA271] gi|331679743|ref|ZP_08380413.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H591] gi|84029291|sp|P0AGJ3|TRMH_ECO57 RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName: Full=tRNA [Gm18] methyltransferase gi|84029292|sp|P0AGJ2|TRMH_ECOLI RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName: Full=tRNA [Gm18] methyltransferase gi|84029293|sp|P0AGJ4|TRMH_SHIFL RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName: Full=tRNA [Gm18] methyltransferase gi|12518410|gb|AAG58795.1|AE005592_6 putative RNA methylase [Escherichia coli O157:H7 str. EDL933] gi|147866|gb|AAB00161.1| spoU [Escherichia coli] gi|290501|gb|AAA62004.1| spoU [Escherichia coli] gi|1790083|gb|AAC76675.1| tRNA mG18-2'-O-methyltransferase, SAM-dependen [Escherichia coli str. K-12 substr. MG1655] gi|13364001|dbj|BAB37949.1| putative RNA methylase [Escherichia coli O157:H7 str. Sakai] gi|24054164|gb|AAN45138.1| putative RNA methylase [Shigella flexneri 2a str. 301] gi|30043334|gb|AAP19055.1| putative RNA methylase [Shigella flexneri 2a str. 2457T] gi|73857591|gb|AAZ90298.1| putative RNA methylase [Shigella sonnei Ss046] gi|81247491|gb|ABB68199.1| putative RNA methylase [Shigella boydii Sb227] gi|85676392|dbj|BAE77642.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str. K12 substr. W3110] gi|110617219|gb|ABF05886.1| putative RNA methylase [Shigella flexneri 5 str. 8401] gi|157068812|gb|ABV08067.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli HS] gi|169753047|gb|ACA75746.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ATCC 8739] gi|169890993|gb|ACB04700.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|187771590|gb|EDU35434.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4196] gi|188017001|gb|EDU55123.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4113] gi|188491145|gb|EDU66248.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 53638] gi|189002529|gb|EDU71515.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4076] gi|189359254|gb|EDU77673.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4401] gi|189364456|gb|EDU82875.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4486] gi|189369492|gb|EDU87908.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4501] gi|189374444|gb|EDU92860.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC869] gi|189378798|gb|EDU97214.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC508] gi|190902169|gb|EDV61912.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B7A] gi|192930577|gb|EDV83184.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E22] gi|194411884|gb|EDX28201.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B171] gi|194425496|gb|EDX41480.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 101-1] gi|208725933|gb|EDZ75534.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4206] gi|208734072|gb|EDZ82759.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4045] gi|208739228|gb|EDZ86910.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4042] gi|209160263|gb|ACI37696.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4115] gi|209754528|gb|ACI75571.1| putative RNA methylase [Escherichia coli] gi|209754530|gb|ACI75572.1| putative RNA methylase [Escherichia coli] gi|209754532|gb|ACI75573.1| putative RNA methylase [Escherichia coli] gi|209754534|gb|ACI75574.1| putative RNA methylase [Escherichia coli] gi|209754536|gb|ACI75575.1| putative RNA methylase [Escherichia coli] gi|209914383|dbj|BAG79457.1| putative RNA methyltransferase [Escherichia coli SE11] gi|217320350|gb|EEC28774.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. TW14588] gi|218358719|emb|CAQ91377.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia fergusonii ATCC 35469] gi|218362982|emb|CAR00620.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli IAI1] gi|226838817|gb|EEH70844.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 1_1_43] gi|238863706|gb|ACR65704.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BW2952] gi|242379175|emb|CAQ33977.1| tRNA (Gm18) 2'-O-methyltransferase [Escherichia coli BL21(DE3)] gi|253322551|gb|ACT27153.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975480|gb|ACT41151.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli B str. REL606] gi|253979636|gb|ACT45306.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BL21(DE3)] gi|254595006|gb|ACT74367.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|257756603|dbj|BAI28105.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257766737|dbj|BAI38232.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O111:H- str. 11128] gi|260447330|gb|ACX37752.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli DH1] gi|281603014|gb|ADA75998.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2002017] gi|290764895|gb|ADD58856.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str. CB9615] gi|291321607|gb|EFE61043.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B088] gi|309704053|emb|CBJ03399.1| tRNA (guanosine-2'-O)-methyltransferase [Escherichia coli ETEC H10407] gi|310334440|gb|EFQ00645.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1827-70] gi|315138233|dbj|BAJ45392.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli DH1] gi|320177349|gb|EFW52351.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae CDC 74-1112] gi|320185701|gb|EFW60459.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri CDC 796-83] gi|320191296|gb|EFW65946.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC1212] gi|320201323|gb|EFW75904.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli EC4100B] gi|320639558|gb|EFX09166.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. G5101] gi|320644997|gb|EFX14027.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H- str. 493-89] gi|320650264|gb|EFX18753.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H- str. H 2687] gi|320655616|gb|EFX23544.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661350|gb|EFX28774.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str. USDA 5905] gi|320666364|gb|EFX33363.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. LSU-61] gi|323155304|gb|EFZ41487.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli EPECa14] gi|323166862|gb|EFZ52601.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella sonnei 53G] gi|323173260|gb|EFZ58889.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli LT-68] gi|323177656|gb|EFZ63240.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1180] gi|323934804|gb|EGB31186.1| SpoU rRNA methylase [Escherichia coli E1520] gi|323939589|gb|EGB35795.1| SpoU rRNA methylase [Escherichia coli E482] gi|323944104|gb|EGB40184.1| SpoU rRNA methylase [Escherichia coli H120] gi|323959899|gb|EGB55547.1| SpoU rRNA methylase [Escherichia coli H489] gi|323971293|gb|EGB66538.1| SpoU rRNA methylase [Escherichia coli TA007] gi|323975130|gb|EGB70235.1| SpoU rRNA methylase [Escherichia coli TW10509] gi|324111545|gb|EGC05526.1| SpoU rRNA methylase [Escherichia fergusonii B253] gi|324116010|gb|EGC09936.1| SpoU rRNA methylase [Escherichia coli E1167] gi|325499457|gb|EGC97316.1| tRNA guanosine-2'-O-methyltransferase [Escherichia fergusonii ECD227] gi|326337349|gb|EGD61184.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. 1044] gi|326339847|gb|EGD63654.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. 1125] gi|331062554|gb|EGI34474.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA271] gi|331072915|gb|EGI44240.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H591] gi|332345640|gb|AEE58974.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli UMNK88] gi|332751201|gb|EGJ81604.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri 2747-71] gi|332996123|gb|EGK15750.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri VA-6] gi|332997752|gb|EGK17363.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-272] gi|333012867|gb|EGK32244.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-304] Length = 229 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T + A R L + ++ V+ PHN+ AI+R+A A + Sbjct: 1 MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + +A + SD+ + +++G Sbjct: 60 MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|170766883|ref|ZP_02901336.1| tRNA guanosine-2'-O-methyltransferase [Escherichia albertii TW07627] gi|170124321|gb|EDS93252.1| tRNA guanosine-2'-O-methyltransferase [Escherichia albertii TW07627] Length = 229 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPGSRMRTMASTAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + SD+ + +++G E G+ + Sbjct: 69 SWVQVKTHRTIGDAVAHLKGRGMQILATHLSDNAVDFREIDYTCPTCILMGQEKTGITKE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALELADQDIIIPMVGMVQSLNVSVASALILYEAQRQR 165 >gi|170728904|ref|YP_001762930.1| tRNA guanosine-2'-O-methyltransferase [Shewanella woodyi ATCC 51908] gi|169814251|gb|ACA88835.1| tRNA guanosine-2'-O-methyltransferase [Shewanella woodyi ATCC 51908] Length = 231 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 1/153 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L + LD V+ +NI A++R+A A I ++ Sbjct: 15 NRQPDLTLCLDKVHKTNNIAAVIRTADAVGVHQI-HAVWPDIEMRVSGNTASGSQQWVKT 73 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 S++ + A+ILG E G+ + A Sbjct: 74 IKHYHMDDAQQAFRAQNMQVLATTFSETAVDFREIDYTRPTAIILGNERDGVSQEGIAAA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G++++LNVS A+A+ +Y Q Sbjct: 134 GQHIIIPMIGMVQSLNVSVASALVMYEAQRQRT 166 >gi|26250298|ref|NP_756338.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli CFT073] gi|91213169|ref|YP_543155.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UTI89] gi|117625923|ref|YP_859246.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli APEC O1] gi|157156957|ref|YP_001465132.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E24377A] gi|218560723|ref|YP_002393636.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli S88] gi|218691934|ref|YP_002400146.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ED1a] gi|256025618|ref|ZP_05439483.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 4_1_40B] gi|301028430|ref|ZP_07191676.1| RNA methyltransferase, TrmH family [Escherichia coli MS 196-1] gi|306816001|ref|ZP_07450139.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli NC101] gi|307140350|ref|ZP_07499706.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli H736] gi|331644370|ref|ZP_08345499.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H736] gi|331655284|ref|ZP_08356283.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli M718] gi|331659987|ref|ZP_08360925.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA206] gi|26110728|gb|AAN82912.1|AE016769_27 tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli CFT073] gi|91074743|gb|ABE09624.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli UTI89] gi|115515047|gb|ABJ03122.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli APEC O1] gi|157078987|gb|ABV18695.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E24377A] gi|218367492|emb|CAR05274.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli S88] gi|218429498|emb|CAR10462.2| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli ED1a] gi|222035359|emb|CAP78104.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli LF82] gi|281180697|dbj|BAI57027.1| putative RNA methyltransferase [Escherichia coli SE15] gi|294493140|gb|ADE91896.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IHE3034] gi|299878541|gb|EFI86752.1| RNA methyltransferase, TrmH family [Escherichia coli MS 196-1] gi|305850397|gb|EFM50854.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli NC101] gi|307555769|gb|ADN48544.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ABU 83972] gi|307628724|gb|ADN73028.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UM146] gi|312948212|gb|ADR29039.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O83:H1 str. NRG 857C] gi|323949890|gb|EGB45774.1| SpoU rRNA methylase [Escherichia coli H252] gi|323954946|gb|EGB50725.1| SpoU rRNA methylase [Escherichia coli H263] gi|331036664|gb|EGI08890.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H736] gi|331047299|gb|EGI19377.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli M718] gi|331053202|gb|EGI25235.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA206] Length = 229 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T + A R L + ++ V+ PHN+ AI+R+A A + Sbjct: 1 MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + +A + SD+ + +++G Sbjct: 60 MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|312199666|ref|YP_004019727.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c] gi|311231002|gb|ADP83857.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c] Length = 281 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY + + R G + AL R +L + N L + A L Sbjct: 30 ADYVALTDVVLRRRKEPAEGLFIAEGERVIQRALRAGYRA-RSVLVSPNRLDAVP--AEL 86 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 PV P+ + KI G E LA + + + ++VL+ + N+ Sbjct: 87 GPEVPVYLAGPELMAKITGFEVHRGALAAMARHPARDPAELLSWALRVLVLEDLVSHTNL 146 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG---ALEHIPYIRISNLTDALQKMHS 204 GA+ RSA D I+ + R + + + G A+ + D L Sbjct: 147 GAVFRSAAGLGMDAILLSPRCADPLYRRSVRVSMGEVFAVPYARLDPWPAALDTLADRGF 206 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + + + + ++A++LG EG+GL Q AT + M + +LN Sbjct: 207 ETLALTPAADAADLATLRPVADARLAVLLGTEGEGLSAAAQAAATRRVRIPMAAGVDSLN 266 Query: 265 V 265 V Sbjct: 267 V 267 >gi|15079419|gb|AAH11550.1| RNA methyltransferase like 1 [Homo sapiens] gi|312153368|gb|ADQ33196.1| RNA methyltransferase like 1 [synthetic construct] Length = 420 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 46/317 (14%), Positives = 94/317 (29%), Gaps = 56/317 (17%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 Y K R + + + + + L G +S AL + + Sbjct: 92 LRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEY 151 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQ 133 L L D + V + I + + P + P + Sbjct: 152 LKELPVD--KLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQHSLP 209 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P I Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPIINNL 269 Query: 194 NL-----------------------------------TDALQKMHSWGFQ---------- 208 Q++ + Sbjct: 270 EWETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQRVMKFHKYEEEEDVETGA 329 Query: 209 -TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKAL 263 L + + + A+++G E G+ ++ + A + + + +L Sbjct: 330 SQDWLPHVEVQSYDSDWTEAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSL 389 Query: 264 NVSNAAAVALYITQNHF 280 N + AA++ L+ + Sbjct: 390 NSAMAASILLFEGKRQL 406 >gi|8922534|ref|NP_060616.1| RNA methyltransferase-like protein 1 [Homo sapiens] gi|74734265|sp|Q9HC36|RMTL1_HUMAN RecName: Full=RNA methyltransferase-like protein 1 gi|19749337|gb|AAG17988.2|AF177344_1 unknown [Homo sapiens] gi|7022703|dbj|BAA91694.1| unnamed protein product [Homo sapiens] gi|119611048|gb|EAW90642.1| RNA methyltransferase like 1 [Homo sapiens] gi|307686131|dbj|BAJ20996.1| RNA methyltransferase like 1 [synthetic construct] Length = 420 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 46/317 (14%), Positives = 94/317 (29%), Gaps = 56/317 (17%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 Y K R + + + + + L G +S AL + + Sbjct: 92 LRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEY 151 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQ 133 L L D + V + I + + P + P + Sbjct: 152 LKELPVD--KLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQHSLP 209 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P I Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPIINNL 269 Query: 194 NL-----------------------------------TDALQKMHSWGFQ---------- 208 Q++ + Sbjct: 270 EWETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQRVMKFHKYEEEEDVETGA 329 Query: 209 -TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKAL 263 L + + + A+++G E G+ ++ + A + + + +L Sbjct: 330 SQDWLPHVEVQSYDSDWTEAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSL 389 Query: 264 NVSNAAAVALYITQNHF 280 N + AA++ L+ + Sbjct: 390 NSAMAASILLFEGKRQL 406 >gi|54887339|gb|AAH38288.1| Rnmtl1 protein [Mus musculus] Length = 413 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 42/312 (13%), Positives = 91/312 (29%), Gaps = 53/312 (16%) Query: 22 KLRRNHRDYKKMQSF---NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 + + K++ S + + + L G ++ AL + + + Sbjct: 88 RYDKAFPGDKRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEYV 147 Query: 79 ARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLM 136 L D VK + +V + + + + P L++ Sbjct: 148 KELPVDKLKDVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDPVKMTYPETLLHHTLPLVL 207 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE----------- 185 + D++ DP N+G ILRSA C ++ TK + + ++ GA Sbjct: 208 ICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNNVEWE 267 Query: 186 ----HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------------- 227 H+P + D D + Sbjct: 268 TVPNHLPPDTRVYVADNCGHYAQVQMSDKTGDRDWACDRRFLKFHKYEEDLDTKTRKDWL 327 Query: 228 ---------------KIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSNA 268 A+++G E G+ ++ + A + + + +LN + A Sbjct: 328 PKLEVQSYDLDWTGAPAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMA 387 Query: 269 AAVALYITQNHF 280 A++ L+ + Sbjct: 388 ASILLFEGKRQL 399 >gi|294783897|ref|ZP_06749219.1| 23S rRNA methyltransferase [Fusobacterium sp. 1_1_41FAA] gi|294479709|gb|EFG27488.1| 23S rRNA methyltransferase [Fusobacterium sp. 1_1_41FAA] Length = 261 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 92/277 (33%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K++ K ++ ++ G Sbjct: 8 MEIIESKEN-------------------KLIKFLKKLKQKKYRDVEGQFLAEGHK----F 44 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+ ++ ++ ++ N + V + ++ +E Sbjct: 45 LDYNTKP-EIIIVREDVKDLYMEKLNRFECKKI-LVNEKIFQELSSQENSQG----IIIV 98 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D S L++LD V DP N+G I+R A + II TK + + + ++ Sbjct: 99 YSKKNNDLNCLSNNLVILDDVADPGNLGTIIRLCDATNFKDIILTKGTVDAYNEKVIRAT 158 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ ++ + + P + +K A+I G EG+G+ Sbjct: 159 MGSILNVNLFYLEKQEIIKLLKENNYSIIATYLDKEALPYNKIKLKEKNAVIFGNEGRGI 218 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + + ++LNV+ A+A+ LY + Sbjct: 219 SDEFVSISDCKTVIPILSNTESLNVAVASAIILYKFR 255 >gi|315638089|ref|ZP_07893274.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21] gi|315481937|gb|EFU72556.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21] Length = 229 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG L I +L K + + F +K + ++ + + + Sbjct: 2 IVYGKQVFFYILQKHKEMINELYLAKECD-KATFSLIAKAGFKIKKLDFKS-AQALARGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG ++ ++ S+ +++L ++D NIGAI+R+A A DG++ + Sbjct: 60 NHQGFLMDIKEFDFVPFCELKKSEFIVMLCGISDVGNIGAIIRTAYALGVDGLLFIGKNL 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 E + +S+SGA +P ++ AL ++ F+ G ++ K Sbjct: 120 AQE--SIVRSSSGAALDLPICLSNDALSALNELKQMEFKLYGADGKGREVHHLTFPKGKK 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 LI+G+EG GL K + + M +LNVS A A+ Sbjct: 178 VLIMGSEGFGLSSKIIQKCDECVGIAMQNDFDSLNVSAAFAILC 221 >gi|284929527|ref|YP_003422049.1| rRNA methylase [cyanobacterium UCYN-A] gi|284809971|gb|ADB95668.1| rRNA methylase [cyanobacterium UCYN-A] Length = 218 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L ++++ V+ PHN+ AI+R+ A + + + S Sbjct: 16 RQPHLTVLIEDVHKPHNLSAIIRTCDAVGILDLHVVNQNGKYPTFSKVSQGSE-KWVFIT 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 IS S + + +A++LGAE G+ + + Sbjct: 75 TYISIDDAINALKRRKFKIYAAHFSKTAIDYRNVNYTEPVAILLGAEKWGVSKEAAQLVD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS AAAV L+ Q Sbjct: 135 GHITIPMLGMVQSLNVSVAAAVILFEAQRQR 165 >gi|300815109|ref|ZP_07095334.1| RNA methyltransferase, TrmH family [Escherichia coli MS 107-1] gi|300532001|gb|EFK53063.1| RNA methyltransferase, TrmH family [Escherichia coli MS 107-1] Length = 218 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 5 RQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASAAAGSNSWVQVK 63 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + SD+ + +++G E G+ + A Sbjct: 64 THRTIGDAVAHLKGRGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALAD 123 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 124 QDIIIPMIGMVQSLNVSVASALILYEAQRQR 154 >gi|237718577|ref|ZP_04549058.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229452037|gb|EEO57828.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|295084275|emb|CBK65798.1| rRNA methylases [Bacteroides xylanisolvens XB1A] Length = 254 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 83/263 (31%), Gaps = 18/263 (6%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 A L +N K + S K + + G V L L AT + Sbjct: 2 ASLSKN--KIKFIHSLELK-KIRKEERVFLAEGPKLVGDLL--GHFPCRFLAATPSWFQE 56 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 + V + + + Q + S L + LD Sbjct: 57 HPGIDAS----ELVEVSQEDLSR-ASLLKTPQQVLAIFEQPQYTLDPEAVRSSLCLALDD 111 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 V DP N+G I+R A F + II ++ + ++ G + + S Sbjct: 112 VQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHYTSLP----D 167 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-- 258 + S G + + K + ++ + +++G EG G+ + ++ Sbjct: 168 FIRSLGDTPVFGTFLDGKNMYEQPLSANGLIVMGNEGNGIGKEVATLINRKLYIPNYPAG 227 Query: 259 --IIKALNVSNAAAVALYITQNH 279 ++LNV+ A AV + Sbjct: 228 QETSESLNVAIATAVICAEFRRQ 250 >gi|126658117|ref|ZP_01729269.1| RNA methyltransferase TrmH, group 2 [Cyanothece sp. CCY0110] gi|126620755|gb|EAZ91472.1| RNA methyltransferase TrmH, group 2 [Cyanothece sp. CCY0110] Length = 153 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 1/146 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL + P N G I R+ A + + + L ++ H+ +L Sbjct: 4 VVLVNPQIPPNTGNIARTCAATNTELHLVGPLGFELSDRYLKRAGLDYWPHVKLHYHLDL 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + +G S K + L+ G+E +GL QE M ++ Sbjct: 64 VQFQAYHQQQKGRLLGFSVRGKSCYGDCKFQEDDWLVFGSESEGLPLTFQEQCDQMLYIP 123 Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280 MP I++LN+S + AV L+ Sbjct: 124 MPHPKIRSLNLSVSVAVGLFEALRQL 149 >gi|300811210|ref|ZP_07091718.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497810|gb|EFK32824.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 291 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 49/295 (16%), Positives = 101/295 (34%), Gaps = 24/295 (8%) Query: 1 MNLISKKKS-EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59 M+ I ++ + +I + D + + + + Sbjct: 1 MDRIDRENNLIRINAFDDPRLK-------LFTDYNEAQLFHYYEPEAGIFIAESPKVIER 53 Query: 60 ALNNPSRKIFQLLATK-------NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 A+ I L+ K + L + + FP+ + ++ G + Sbjct: 54 AIRAGYEPIAMLVEGKALERDLADFDRELAANHDHLLDFPIFVAQSDLLRQLPGYNLLRG 113 Query: 113 GLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 + + + VL+ V +P N+GAI RSA A DG++ T S Sbjct: 114 AICAFRRKKRPSLREFAAALPKHARVGVLESVVNPTNVGAIFRSAAALGMDGVLITTDSS 173 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDAL------QKMHSWGFQTIGLSSDSKKPLEQE 223 + + G + +P+ + Q++ + Sbjct: 174 DPLYRRSGRVSMGTVFQVPWTYLDQKLWREKGVASLQELGFKTAAMALRDNTVDIDDPVL 233 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + D++A+ILG+EG GL P+T + + M + +LNV+ A+A+A + + Sbjct: 234 KEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKK 288 >gi|258512124|ref|YP_003185558.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478850|gb|ACV59169.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 256 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 1/152 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R S + + ++ V+D HN AILRSA AF + + P + + + Sbjct: 43 MRRTSYIAVAMEAVDDGHNQAAILRSAEAFGVQHVAVIEGKQPFHPSKGVTQGAHKWLTL 102 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + L +P++ A++ G E G+ P+ +E Sbjct: 103 QRMPDIGRAIDALHARGFQVYATDLGEG-AQPIDAVDLARPTAILFGNEKDGVSPEARER 161 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A ++ M G +++ NVS AAA+ALY Sbjct: 162 ADGRFYIPMAGFVQSFNVSVAAAIALYELTRR 193 >gi|298531014|ref|ZP_07018415.1| RNA methyltransferase, TrmH family, group 3 [Desulfonatronospira thiodismutans ASO3-1] gi|298509037|gb|EFI32942.1| RNA methyltransferase, TrmH family, group 3 [Desulfonatronospira thiodismutans ASO3-1] Length = 240 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 93/229 (40%), Gaps = 5/229 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT--VPPQTIDKI--- 104 + G V AL I +L K LD + V+ VP Q + ++ Sbjct: 5 LVLGKKPVMEALEENPEHIDLVLVKKPVPRGLDPVISRCRQLHVRFKLVPDQELQQMGAA 64 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 A + L +L++LD V DP N+G + R+ A GII Sbjct: 65 RQGIAARLRMQTLVDLDLLLNNTTRAVFPVLLLLDQVQDPGNLGTLARTLAALGGAGIII 124 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + S K+++GAL I +++NL L + GF + D + + ++ Sbjct: 125 PRDRSAPLGPGAMKASAGALNRIGVAQVTNLARTLDHIDQAGFNIYAATMDQGQSVLEQT 184 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L+LG E KG+RP + H+ M G + +LNV++A A+ L Sbjct: 185 FVFPAVLVLGGEEKGIRPNVLKRCPGKIHIPMAGGMDSLNVAHAGALIL 233 >gi|297571490|ref|YP_003697264.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum DSM 20595] gi|296931837|gb|ADH92645.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum DSM 20595] Length = 281 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 92/254 (36%), Gaps = 18/254 (7%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY K+ + ++ G + A+N + + L L Sbjct: 14 ADYTKLTDVALRKSLEAERGLYMAEGDKVIGRAINAGHTP-RSFIMSARWLETLQPIIEQ 72 Query: 88 PHP------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVL 138 PV + I+++ G LA P L + ++ ++VL Sbjct: 73 ATGHADGGDIPVYVASEELIEELTGFHVHRGALAAMNRPELPSVEEFLGPDSTARRIIVL 132 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 +++ + N+GA+ RS A D ++ T S + + G + +P+ RI + + Sbjct: 133 ENLVNHTNVGAVFRSMAALGFDAVLLTDSASDPLYRRAVRVSMGTVFQVPWTRIPHWPRS 192 Query: 199 LQKMHSWGFQTIG--------LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 +Q + G+ T + + + K+ALILG EG GL T A Sbjct: 193 MQMLKDRGWITASLALRDDALPLDQFAQLPDVMAPDSKVALILGTEGDGLSAATISHADH 252 Query: 251 MAHLHMPGIIKALN 264 + M G + +LN Sbjct: 253 AVVIPMAGGVDSLN 266 >gi|325855522|ref|ZP_08171859.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS 18C-A] gi|325483805|gb|EGC86764.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS 18C-A] Length = 242 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 35/255 (13%), Positives = 79/255 (30%), Gaps = 24/255 (9%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K + + G VS L + ++L + ++ + + Sbjct: 6 RTKLIRSLETK-KGREKAGLFVAEGPKVVSDLL-HGGFLAEEVLEDIEDIRKVSFLKHPQ 63 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + +P + + QL++ LD V DP N+G Sbjct: 64 SVLGIFKMPEEADETSKDYSRT---------------FHEHIEGQLVLALDGVQDPGNLG 108 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F D I + + + + ++ G++ + + + Sbjct: 109 TIIRIADWFGIDDIFCSHETADCWNPKVVQATMGSIARVKLHYLDLNLLIDNLPIDYPVY 168 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALN 264 L + +++G EG G+ P + + ++LN Sbjct: 169 ATLLDGKNLYAQP---LTAHGMIVMGNEGNGITPLLRTKINRKLLIPNYHAGREAAESLN 225 Query: 265 VSNAAAVALYITQNH 279 V+ A ++ + Sbjct: 226 VAVATSIVCAEFRRR 240 >gi|260846564|ref|YP_003224342.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|257761711|dbj|BAI33208.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O103:H2 str. 12009] Length = 229 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T + A R L + ++ V+ PHN+ AI+R+A A + Sbjct: 1 MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + +A + SD+ + +++G Sbjct: 60 MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|218288912|ref|ZP_03493163.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius LAA1] gi|218241001|gb|EED08178.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius LAA1] Length = 249 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 1/152 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R + + ++ V+D HN AILRSA AF + + P + + + I Sbjct: 39 MRRTGYIAVAMEAVDDGHNQAAILRSAEAFGVQHVAVIEGKQPFQPSKGVTQGAHKWLTI 98 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + L D +P++ A++ G E G+ P+ +E Sbjct: 99 HRMPSVGRAIDALHARGFQVYATDL-GDGAEPIDAVDLARPTAILFGNEKDGVSPEARER 157 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A ++ M G +++ NVS AAA+ALY Sbjct: 158 ADGRFYIPMAGFVQSFNVSVAAAIALYELTRR 189 >gi|312891737|ref|ZP_07751246.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM 18603] gi|311295820|gb|EFQ72980.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM 18603] Length = 224 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 9/228 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 G+ +++ +N+ KI + T + + +L NL P + K Sbjct: 2 AEGIKSITEFINSDY-KIETIYHTPSFVPKL---LNLSQKINFIECPATDLAKFSSLTTP 57 Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 + +AL P + +VLD + DP N+G I+R+A F II ++ Sbjct: 58 QEVIALIKIPTWPVLETKILQQSFSIVLDGIQDPGNLGTIIRTADWFGIQNIICSEDTVD 117 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + +A + ++ G+L I ++ ++ + + + + + Q + Sbjct: 118 AYNAKVVQATMGSLARIHVHYVNL-----AQLITNTKLPVFGALLDGENIYQTNFGSQGL 172 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++LG EG G+RP+ Q + + G ++LNV+ A AV Sbjct: 173 IVLGNEGNGIRPEIQALIQKPVTIPLLGKAESLNVAIANAVFCSEISR 220 >gi|304382953|ref|ZP_07365435.1| TrmH family RNA methyltransferase [Prevotella marshii DSM 16973] gi|304335978|gb|EFM02226.1| TrmH family RNA methyltransferase [Prevotella marshii DSM 16973] Length = 278 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 95/259 (36%), Gaps = 16/259 (6%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S QK ++ G TV L P L+ATK + + P Sbjct: 30 KIKFIRSLQQK-KNRMAEGLFVAEGPKTVGELL--PVFNATLLIATKEWM----AENASP 82 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQ--GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 V V + + KI + Q G+ +L + +S L++ LD V DP N Sbjct: 83 AGVEVIVVEEEMLGKISFLQHPQQVIGIFRIPDDSNDASLFQLPDSDLVLALDGVQDPGN 142 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G I+R A F + + + + + + ++ G++ + + Sbjct: 143 LGTIIRIADWFGITTLFCSPDTADAYNPKVVQATMGSIARVRLVYTDLK---DLLDALHP 199 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKA 262 + + + + + Q+ + +++G EGKGL T + ++ Sbjct: 200 DTPVYGTLLNGEDIYQQSLSRNGLIVMGNEGKGLSKAIASRVTHRLLIPSFPTEKPTAES 259 Query: 263 LNVSNAAAVALYITQNHFA 281 LNV+ A AV + F Sbjct: 260 LNVAIATAVVCAEFRRRFI 278 >gi|113954546|ref|YP_729963.1| RNA methyltransferase, TrmH family protein [Synechococcus sp. CC9311] gi|113881897|gb|ABI46855.1| RNA methyltransferase, TrmH family protein [Synechococcus sp. CC9311] Length = 290 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 53/285 (18%), Positives = 94/285 (32%), Gaps = 23/285 (8%) Query: 14 SLKD-SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK----I 68 SLKD S R + ++++S + +S + + L G H + L S + Sbjct: 2 SLKDQSDELITSRRNPLVRRLRSLSARS-GRDEHGVVLLEGTHQLQE-LQCCSWTDSVSL 59 Query: 69 FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 + D LP V+ + + + Q + L+ Sbjct: 60 DVVATPAWLQTHADLIRALPGSVRVQRISAEALQ---AGLTTVQPDGVACLLPLACLPSV 116 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 V ++ LD + DP N+G +LR+A A + P V+ SA L Sbjct: 117 VEAPDFVLALDRIQDPGNLGTLLRTARAADIQQVWCASGADPLAPKVVRSSAGAILSLPV 176 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSK-------------KPLEQEIKNDKIALILGA 235 + + + ++ Q +P + L+LG Sbjct: 177 ERFGPDPMEGVVQLAERLNQAREAGLQIVATLVPDAAANLSVQPYWELDWTLPTVLLLGN 236 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 EG GL P Q ++ L +++LNV+ AA L + Sbjct: 237 EGAGLDPLLQACCSAGVTLPHSSAVESLNVAAAAVPLLLERRRAR 281 >gi|34556873|ref|NP_906688.1| hypothetical protein WS0446 [Wolinella succinogenes DSM 1740] gi|34482588|emb|CAE09588.1| conserved hypothetical protein [Wolinella succinogenes] Length = 257 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 88/243 (36%), Gaps = 4/243 (1%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K + H + +YG L + I + K L + + Sbjct: 10 KNSPALELPLSHPELKSFMIIYGKQIFLYVLRRHPKLIKSVYLGKEVEKDLFKEISRL-G 68 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 P+ V P+ + + + HQG +E + +L ++ L+VL V+D NIG I Sbjct: 69 IPLLRVDPKK-AQAMARGGNHQGFLMEIEAISPLSLGEIKRVDRLLVLHGVSDSGNIGGI 127 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 RSA +G+I T S S A S I L T+ Sbjct: 128 FRSAYCLGMEGVILTN--LSSFSIESAIRTSSGALLELPFGIVKNPWDLINELRGAGFTL 185 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++ + + K AL +G+EG+GL K + + M +LNV AAA Sbjct: 186 YGAALEGEIPNGKSFASKRALFMGSEGEGLPKKLLSKLDQLLKIEMERDFDSLNVGVAAA 245 Query: 271 VAL 273 + + Sbjct: 246 ILM 248 >gi|319408924|emb|CBI82581.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella schoenbuchensis R1] Length = 271 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 104/252 (41%), Gaps = 6/252 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + + ++ +K Q G +SA L++ LL L + Sbjct: 12 DDPRLEAYRNIREKDLVGRQH-QFIAEGKVVLSALLHSKDFSALSLLIVAARLLGIMPIL 70 Query: 86 NLPHP-FPVKTVPPQTIDKIVGKEAVHQG---LALETAPLLSPTLDAVRNSQLLMVLDHV 141 P P+ VP + +D I G +T P L L + L+ VL + Sbjct: 71 KATKPTCPIYCVPQKVMDDIAGFHVHRGMLGIGERKTLPSLQDFLQNLPEKTLVPVLCGI 130 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 ++ N+GAI R+A AF+ GII K + + GA IPY + +++ ++ Sbjct: 131 SNHDNMGAIFRNAAAFASHGIIVDKTSCDPLYRKAIRVSVGAALKIPYTQGADIDSIIEA 190 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 ++ F LS + + L++ + A+ILGAEG GL + + + M Sbjct: 191 LNDADFHLYALSPSAPRYLKEAKSTKRTAIILGAEGDGLPAHILQKS-ETLRIPMAYGFD 249 Query: 262 ALNVSNAAAVAL 273 +LNV+ A+ +AL Sbjct: 250 SLNVATASGIAL 261 >gi|187732340|ref|YP_001882364.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii CDC 3083-94] gi|187429332|gb|ACD08606.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii CDC 3083-94] Length = 229 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T + A R L + ++ V+ PHN+ AI+R+A A + Sbjct: 1 MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + +A + SD+ + +++G Sbjct: 60 MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|296200974|ref|XP_002747842.1| PREDICTED: RNA methyltransferase-like protein 1 [Callithrix jacchus] Length = 429 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 43/317 (13%), Positives = 90/317 (28%), Gaps = 56/317 (17%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 Y K R + + + + + L G ++ AL + + Sbjct: 92 LRYDKAFPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKVFFFSRVEY 151 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQ 133 L L D + V + I + + P + P + Sbjct: 152 LKELPVD--KLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQHSLP 209 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL++ D++ DP N+G ILRSA C ++ TK + + ++ A +P I Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMSAHFQVPIINNL 269 Query: 194 NLTDALQKMHSWGFQT-------------------------------------------- 209 + Sbjct: 270 EWETVPNYLPPDTRIYVADNCGRYAQAQVSNKAGDHGWVCDQRALKSHRYEEEEDVETGA 329 Query: 210 --IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKAL 263 L + + + A+++G E G+ ++ + A + + + +L Sbjct: 330 SQDWLPEVEVQSYDLDWTEAPAAVVVGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSL 389 Query: 264 NVSNAAAVALYITQNHF 280 N + AA++ L+ + Sbjct: 390 NSAMAASILLFEGRRQL 406 >gi|295394712|ref|ZP_06804928.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294972445|gb|EFG48304.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 293 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 90/240 (37%), Gaps = 5/240 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY ++ + + + + A + K + L L Sbjct: 39 DYTQLTDVELRKKLEPENGLFISESSKIIQRAHDAG-MKFRSFFLNAHWLEPLAPVIA-H 96 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 H P+ ++K+ G LA P L + VR++ ++++++ + D N+G Sbjct: 97 HDVPIYVGSEADLEKVAGFRLHRGALASTQRPHLPSVAEVVRDTSVVVIIEDLVDHTNVG 156 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI RS A D ++ T R + + + G + +P+ RI +++ GF Sbjct: 157 AIFRSVAALGADAVLVTPRCADPLYRRAIRVSMGTVFQVPWTRIDPWPESIDTFQDAGFV 216 Query: 209 ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +K+AL+ G+EG GL T++ + M G + +LNV Sbjct: 217 VAGMTLGEGAITLDELVAEDYEKLALVFGSEGPGLTQATEQRLDRRVTIPMMGGVDSLNV 276 >gi|322378717|ref|ZP_08053148.1| SpoU methylase [Helicobacter suis HS1] gi|322380665|ref|ZP_08054817.1| rRNA methylase [Helicobacter suis HS5] gi|321146987|gb|EFX41735.1| rRNA methylase [Helicobacter suis HS5] gi|321148860|gb|EFX43329.1| SpoU methylase [Helicobacter suis HS1] Length = 228 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 84/227 (37%), Gaps = 8/227 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106 ++G V L + ++ L K + L + + + + + + Sbjct: 2 IVFGKQVVLHMLTHYPNRVSVLYLAKEVDKKTFSLFRAHQREYQSQIINLDFKK-AQAMA 60 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 K A HQG E P TL ++ ++VL ++D N+GA+ RS A +G+I Sbjct: 61 KGANHQGFLAEVLPPQKSTLKDIKTLDKILVLCGLSDVGNVGALFRSVAALGFEGVILDL 120 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 +S + + + + + ++ + Sbjct: 121 HMPY----EGLVRSSLGALYDVPFCVCQNILDVICELKEAGVFCYGAHIRGQDVKNAVFT 176 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +AL LG+EG GL + + H+ M G + +LNVS A A+ + Sbjct: 177 HPLALFLGSEGMGLHSRILNKMDQLLHIKMQGKMDSLNVSVAGAILM 223 >gi|302804484|ref|XP_002983994.1| hypothetical protein SELMODRAFT_3011 [Selaginella moellendorffii] gi|300148346|gb|EFJ15006.1| hypothetical protein SELMODRAFT_3011 [Selaginella moellendorffii] Length = 244 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 100/246 (40%), Gaps = 24/246 (9%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF------------PVKTVPP 98 LYG+ V AAL R ++ L + V+T Sbjct: 3 LYGIGPVRAALQARRRDLYVLYVQNGLDEKHPGKRKALADVLWIMKAAKRLELRVETTSK 62 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAIL 151 ++ +V HQG+ L+ +PL + + + + + LD V DP N GAIL Sbjct: 63 HALNVLVD-NRPHQGMVLDASPLEMVDISALDRPDAMLARAPVWVALDEVKDPQNFGAIL 121 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTI 210 RS+ F G++ + S S V++K+++GALE I + N+ + Sbjct: 122 RSSHFFGVCGVVVCSKNSAPLSGVVSKASAGALEMIDLLSCKNMMMFLRDSADNGWRVIG 181 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 +S + L KN L+LG EG G+RP + PG + +LNVS AA Sbjct: 182 TSNSPESEVLGDLPKNVPTILVLGNEGVGIRPFLNSEVDCVLR---PGTVDSLNVSVAAG 238 Query: 271 VALYIT 276 V L+ Sbjct: 239 VLLHEL 244 >gi|62290470|ref|YP_222263.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941] gi|82700394|ref|YP_414968.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar Abortus 2308] gi|237815979|ref|ZP_04594976.1| RNA methyltransferase [Brucella abortus str. 2308 A] gi|254697915|ref|ZP_05159743.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 2 str. 86/8/59] gi|254730805|ref|ZP_05189383.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 4 str. 292] gi|260758525|ref|ZP_05870873.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260762349|ref|ZP_05874692.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|62196602|gb|AAX74902.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str. 9-941] gi|82616495|emb|CAJ11562.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar Abortus 2308] gi|237789277|gb|EEP63488.1| RNA methyltransferase [Brucella abortus str. 2308 A] gi|260668843|gb|EEX55783.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260672781|gb|EEX59602.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] Length = 276 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 65/280 (23%), Positives = 118/280 (42%), Gaps = 18/280 (6%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + +F + D+ +L +RD ++ ++ R G V Sbjct: 1 MQDIDTRSHDCVFVIDDADDIRLAP-YRDIREKDLVGRQQR-------FIAEG-KVVLNV 51 Query: 61 L--NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L ++ + LL +N L L LP PV +VP +D + G VH+G+ Sbjct: 52 LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110 Query: 118 TAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 P L + L++VL +++ N+G+I R+A AF D ++ + Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + + GA +PY + D + GF + L+ + + + + ++ AL+L Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 G EG+GL + E A + M +LNV+ A+ +AL Sbjct: 231 GTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASDIAL 269 >gi|197286694|ref|YP_002152566.1| tRNA guanosine-2'-O-methyltransferase [Proteus mirabilis HI4320] gi|227355114|ref|ZP_03839525.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC 29906] gi|194684181|emb|CAR45642.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis HI4320] gi|227164901|gb|EEI49748.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC 29906] Length = 239 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 1/166 (0%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T + A+R L + L+ V+ HN+ A++R+A A I Sbjct: 1 MNPTRYARICQMMAMRQPDLTVCLEEVHKSHNVAAVIRTADAVGIPKI-HAIWPEEKMRM 59 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 +++ +A + SD + +I+G Sbjct: 60 LVSPAAGSNSWVNVNTHPTIADAINTFRAQGMQVLATHLSDKAVDFREIDYTQPTCIIMG 119 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ P+ A + M G++++LNVS A+A+ LY Q Sbjct: 120 QEKTGISPEAIALADQDIIVPMMGMVQSLNVSVASALILYEAQRQR 165 >gi|332702320|ref|ZP_08422408.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio africanus str. Walvis Bay] gi|332552469|gb|EGJ49513.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio africanus str. Walvis Bay] Length = 262 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 93/246 (37%), Gaps = 11/246 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPP 98 H S + G V L+ ++ ++ K A D + V Sbjct: 5 HQSSESLRLVAGRKPVLELLSTAPERVEGVMLQKGAKGGPVEQILDLCRQRGVRFRFVER 64 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILR 152 +D+ HQG+ + L LL+ LD V DP N+GA++R Sbjct: 65 HELDR--QFPGNHQGVLADIFEAGYTELHELLQTARQSPLPLLVALDQVLDPGNVGALVR 122 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 + A G++ K ++ K+++GAL +P R++NL AL++ G+ G Sbjct: 123 TVYALGGAGLLVPKHHAARLGTGALKASAGALLRLPIARVTNLARALEECAEAGYTIYGT 182 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + L ++LG E KG+RP + + + +LNV+ A A+ Sbjct: 183 QGEVGENLFFLEPRLPAVVVLGGEEKGMRPGVAKRCDFTLRIPLQHGFDSLNVAQAGALI 242 Query: 273 LYITQN 278 Sbjct: 243 TGHFAR 248 >gi|300939291|ref|ZP_07153965.1| RNA methyltransferase, TrmH family [Escherichia coli MS 21-1] gi|300455798|gb|EFK19291.1| RNA methyltransferase, TrmH family [Escherichia coli MS 21-1] Length = 218 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 4 MRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASAAAGSNSWVQV 62 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + SD+ + +++G E G+ + A Sbjct: 63 KTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALA 122 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 123 DRDIIIPMIGMVQSLNVSVASALILYEAQRQR 154 >gi|228919042|ref|ZP_04082421.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228950640|ref|ZP_04112774.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228956533|ref|ZP_04118329.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229040997|ref|ZP_04189760.1| tRNA/rRNA methyltransferase [Bacillus cereus AH676] gi|229067857|ref|ZP_04201174.1| tRNA/rRNA methyltransferase [Bacillus cereus F65185] gi|229077387|ref|ZP_04210047.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2] gi|229107778|ref|ZP_04237414.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15] gi|229125609|ref|ZP_04254641.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4] gi|229142898|ref|ZP_04271339.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24] gi|229148501|ref|ZP_04276757.1| tRNA/rRNA methyltransferase [Bacillus cereus m1550] gi|229176692|ref|ZP_04304096.1| tRNA/rRNA methyltransferase [Bacillus cereus 172560W] gi|229188377|ref|ZP_04315425.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876] gi|228595051|gb|EEK52822.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876] gi|228606735|gb|EEK64152.1| tRNA/rRNA methyltransferase [Bacillus cereus 172560W] gi|228634917|gb|EEK91490.1| tRNA/rRNA methyltransferase [Bacillus cereus m1550] gi|228640519|gb|EEK96908.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24] gi|228657801|gb|EEL13607.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4] gi|228675627|gb|EEL30835.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15] gi|228705921|gb|EEL58247.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2] gi|228715216|gb|EEL67075.1| tRNA/rRNA methyltransferase [Bacillus cereus F65185] gi|228727294|gb|EEL78488.1| tRNA/rRNA methyltransferase [Bacillus cereus AH676] gi|228803098|gb|EEM49920.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228808991|gb|EEM55476.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228840567|gb|EEM85829.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 161 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 80/154 (51%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + ++LD + DPHN+G+I+R+A A GII KR + +A +AK+++GA+E+ Sbjct: 3 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 62 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 IP R++NL+ + ++ G G + K I L++G+EGKG+ E Sbjct: 63 IPVARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGTMPIGLVIGSEGKGMSRIIGE 122 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L M G + +LN S AA++ +Y Sbjct: 123 KCDFLITLPMVGKVTSLNASVAASLLMYEVYRKR 156 >gi|218697372|ref|YP_002405039.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 55989] gi|256021345|ref|ZP_05435210.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9] gi|332282578|ref|ZP_08394991.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9] gi|218354104|emb|CAV00665.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli 55989] gi|332104930|gb|EGJ08276.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9] Length = 229 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T + A R L + ++ V+ PHN+ AI+R+A A + Sbjct: 1 MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + +A + SD+ + +++G Sbjct: 60 MASAAAGSNSWVQVKTHRTIGDAVAHLKGRGMQILATHLSDNAVDFREIDYTRPTCILMG 119 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|116513973|ref|YP_812879.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093288|gb|ABJ58441.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 291 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 49/295 (16%), Positives = 101/295 (34%), Gaps = 24/295 (8%) Query: 1 MNLISKKKS-EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59 M+ I ++ + +I + D + + + + Sbjct: 1 MDRIDRENNLIRINAFDDPRLK-------LFTDYNEAQLFHYYEPEAGIFIAESPKVIER 53 Query: 60 ALNNPSRKIFQLLATK-------NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 A+ I L+ K + L + + FP+ + ++ G + Sbjct: 54 AIRAGYEPIAMLVEEKALERDLADFDRELAANDDHLLDFPIFVAQSDLLRQLPGYNLLRG 113 Query: 113 GLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 + + + VL+ V +P N+GAI RSA A DG++ T S Sbjct: 114 AICAFRRKKRPSLREFAAALPKHARVGVLESVVNPTNVGAIFRSAAALGMDGVLITTDSS 173 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDAL------QKMHSWGFQTIGLSSDSKKPLEQE 223 + + G + +P+ + Q++ + Sbjct: 174 DPLYRRSGRVSMGTVFQVPWTYLDQKLWREKGVASLQELGFKTAAMALRDNTVDIDDPAL 233 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + D++A+ILG+EG GL P+T + + M + +LNV+ A+A+A + + Sbjct: 234 KEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKK 288 >gi|268608625|ref|ZP_06142352.1| hypothetical protein RflaF_03872 [Ruminococcus flavefaciens FD-1] Length = 214 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 75/213 (35%), Gaps = 4/213 (1%) Query: 73 ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132 K+ P+ T + I I G V L L + R Sbjct: 2 CRKDIEGEAKGIVARCGDIPLYTGEEEEITAITGFRLVRGALCAMRRRELPSAEELCRGK 61 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL----AKSASGALEHIP 188 + + VL++V +P N+GAI RSA A + +I T + + I Sbjct: 62 KRIAVLENVVNPTNMGAIFRSAAALGMEAVILTSDCTDPLYRRSSRVSMGTVFQVPWTIM 121 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R D L + + ++ +K+A+I+G EG+GL T + Sbjct: 122 KCRNEEYPDILHGLGYKMAAMALKDNSVDIDDDRLNSEEKLAVIMGTEGEGLADHTIDAC 181 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M + +LNV+ A+AVA + Sbjct: 182 DYTVKIPMYNGVDSLNVAAASAVAFWQLGKKRK 214 >gi|308234552|ref|ZP_07665289.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium vaginae DSM 15829] gi|328944150|ref|ZP_08241615.1| TrmH family RNA methyltransferase [Atopobium vaginae DSM 15829] gi|327492119|gb|EGF23893.1| TrmH family RNA methyltransferase [Atopobium vaginae DSM 15829] Length = 272 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 76/217 (35%), Gaps = 8/217 (3%) Query: 68 IFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 + +L L+ L+ P+ + + K+VG A P L + Sbjct: 54 VISVLVWDKHLSNLERSISPEAFGDVPIYVASHELLSKLVGFNVCRGYYACVRRPSLLSS 113 Query: 126 LD-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + + V++ + D N+GA++R+A A D ++ + + + +++ G + Sbjct: 114 ASVDWHSYTRIAVVEDLCDVSNLGALIRNACALGIDAVVCSPTCADPFNRRCVRTSMGTV 173 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKG 239 +P I+ ++ + AL G E KG Sbjct: 174 FRLPIIQANSNWPYDVFSCLSSADYTVFGAALRKDALNVHDVDFSHYKRCALCFGNESKG 233 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L + + + M + +LNV+ ++AV + Sbjct: 234 LSTPVIDACDQLVMIPMKHGVDSLNVAASSAVLFWDM 270 >gi|325973155|ref|YP_004250219.1| spoU rRNA methylase family protein [Mycoplasma suis str. Illinois] gi|325989598|ref|YP_004249297.1| SpoU rRNA methylase family protein [Mycoplasma suis KI3806] gi|323574683|emb|CBZ40339.1| SpoU rRNA methylase family protein [Mycoplasma suis] gi|323651757|gb|ADX97839.1| spoU rRNA Methylase family protein [Mycoplasma suis str. Illinois] Length = 253 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 43/248 (17%), Positives = 91/248 (36%), Gaps = 11/248 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 + L L G +V L + + A P + + Sbjct: 5 KKQLILNGKKSVLEILKDVELRKLIHHVYLTESQTSLISACKTLEIPYSLQNSAWLKSLQ 64 Query: 106 GKEAVHQGLALETAPLLSP----------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + D S L+++++ + DP+N GAI+R+ V Sbjct: 65 REFDAKYSNVFAVLNSRQQLSFEDFKQVLWKDQKNTSYLIVMVEKIQDPYNFGAIIRTCV 124 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF-QTIGLSS 214 A + II + + + V+ K++ G + I++ +L+ AL ++ + F Sbjct: 125 AAGVNYIIYSSSNNTKLNNVVLKTSQGYALKMQLIQVKDLSKALAELKKFNFLSYAASLK 184 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K ++ ++LG EG+G+ P+ + + + M +++LNVS A + +Y Sbjct: 185 SPSKNYFSVKYENRTIIVLGNEGEGISPRLENSVDYRIKIPMNNGVESLNVSVANGILIY 244 Query: 275 ITQNHFAK 282 + + Sbjct: 245 EVLRQWKE 252 >gi|297807561|ref|XP_002871664.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297317501|gb|EFH47923.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Length = 350 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/201 (10%), Positives = 54/201 (26%), Gaps = 6/201 (2%) Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 + + V + ++ + + E ++ S L Sbjct: 105 DCRGSWFPYEDRFRCAEVHLSSREVLEAVTPH------MMEERTDRFRRVVENRSFSVCL 158 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +V + + A + + + S + S + Sbjct: 159 VVEGLSDFGNISAAFRSADALGIQSVHVVSCGSSKRYNGNRHVSMGAEKWLDIEFWDTPK 218 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + A+++G EG+G+ + E + + Sbjct: 219 ECFKVLKSRGYRIATTHLGMDTVSIYDMDWSCPTAIVVGNEGRGICDEALELSDLRCSIP 278 Query: 256 MPGIIKALNVSNAAAVALYIT 276 M G++ + NVS AA + ++ Sbjct: 279 MNGMVDSFNVSVAAGILMHHA 299 >gi|332184159|gb|AEE26413.1| rRNA methyltransferase [Francisella cf. novicida 3523] Length = 250 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 88/259 (33%), Gaps = 15/259 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD 84 + + YK+++ + S+ + + G AL P ++I +L T+ + Sbjct: 5 SQKLYKEIKKLH-SSQGRKKSLYYVIEGFRCAQEALKRLPQQQIIAILVTEKTD---SPN 60 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 L + + + + + L + + + ++VLD + DP Sbjct: 61 YALDKK---YIITEKDFEALSQTQNPQGIL---ILAEKPNSQELNFDDDFILVLDRIQDP 114 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIG ILR+A+A II + ++ GA + + + L D Sbjct: 115 GNIGTILRTAIAVGLKEIILINGTVDPFNPKAIRAGMGAQFSLKFSYLETLADLKNISKL 174 Query: 205 WGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + L+ G E G+ + + I++L Sbjct: 175 QQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDFSIG---EKTMIPTLSDIESL 231 Query: 264 NVSNAAAVALYITQNHFAK 282 NV+ AA + L+ K Sbjct: 232 NVAQAATIYLFEGLRQRLK 250 >gi|218263084|ref|ZP_03477322.1| hypothetical protein PRABACTJOHN_03003 [Parabacteroides johnsonii DSM 18315] gi|218222958|gb|EEC95608.1| hypothetical protein PRABACTJOHN_03003 [Parabacteroides johnsonii DSM 18315] Length = 256 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 91/257 (35%), Gaps = 18/257 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S K ++ ++ G V+ + + +LA + + + Sbjct: 6 KVKYIHSLEMK-KYRNELNAFVAEGNKLVADMMFA--FECELILAKPSWM-------AMQ 55 Query: 89 HPFPVKTVPPQTIDKI--VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 P K + + I Q + +A +S L++ LD + DP N Sbjct: 56 GNIPAKELLEAEDEDIRKASFLKNPQDVLAVFKRPDWSIDEADPSSSLVLALDGIQDPGN 115 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G I+R A F + I+ + + S ++ GAL H+ K Sbjct: 116 LGTIIRLADWFGIEHIVCSPDTADVFSPKTVQATMGALAHVKVHYTELE--DYLKAQVAR 173 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKA 262 + + + + + + +++G EG G+RP+ +E ++ ++ Sbjct: 174 QIPLFGTFLDGENMYTKELSANGIIVMGNEGNGIRPQIEELIDQKLYIPSFPPERETSES 233 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ A AV + Sbjct: 234 LNVAIATAVICAEFRRR 250 >gi|158426093|ref|YP_001527385.1| SpoU rRNA methylase family protein [Azorhizobium caulinodans ORS 571] gi|158332982|dbj|BAF90467.1| SpoU rRNA methylase family protein [Azorhizobium caulinodans ORS 571] Length = 281 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 99/260 (38%), Gaps = 10/260 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDW 83 + + ++ + G V L + R + +L ++ +L R+ Sbjct: 23 PDDPRIADYRDVRERDLVGRR-GLFMAEGE-VVLRLLTAHGGRDLHSVLVSQASLPRIAD 80 Query: 84 DANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVL 138 +L P PV +D IVG +H+G+ L ++ L++ L Sbjct: 81 ALDLLPRNVPVHVAGQAVMDAIVGFH-IHRGILAVGRARPQVPAPELLASLPERALVVAL 139 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 + + N+G I R+A AF D ++ + + GA +P R + Sbjct: 140 QGIANHDNMGGIFRNAAAFGADAVLLDSACCDPLYRKAIRVSVGASLIVPTARAGTTAEM 199 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 ++ + + GF + LS ++ L + + A + G EG GL P+ +T + M Sbjct: 200 MEAIAAAGFDLVALSPSGRERLSDIVPGGRQAALFGTEGPGLPPEVLA-STRTISIPMAA 258 Query: 259 IIKALNVSNAAAVALYITQN 278 +LNV+ + + L+ Sbjct: 259 SFDSLNVATTSGIVLHHLSR 278 >gi|332673651|gb|AEE70468.1| RNA methyltransferase [Helicobacter pylori 83] Length = 227 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 88/224 (39%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + LN+ K+ ++ +K + + L P + + K Sbjct: 4 VIYGKQVLMRILNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ L V+ +Q L+VL + D NIG I RSA DGII ++ Sbjct: 62 NHQGVLAKVELPLALPLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGII--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + ++ T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|325067170|ref|ZP_08125843.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces oris K20] Length = 310 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 107/260 (41%), Gaps = 7/260 (2%) Query: 26 NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--L 81 ++ ++ + ++ + G V A+ + ++ + T+ AL R Sbjct: 42 SNPTSARISRVAGLSRRNARAKHRRFLVEGPQGVREAVRHAPGRVLDVYLTEAALERHSE 101 Query: 82 DWDANLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 WD + V Q +D + + + +A E A A+ ++L+ VL Sbjct: 102 IWDEAVAAGLYVHVTTQQVMDAMSPDAQGLLAVVATEEATGSEALAAALEGARLVAVLTQ 161 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 DP N G I+R+A A D I+ + + + +S +G+L H+P + L DA+ Sbjct: 162 AQDPGNAGTIIRAADAAGADAIVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVALDDAVT 221 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 +H+ G + L + A +LG E GL + A ++ + + G Sbjct: 222 ALHNAGLTVLAADGRGDFDLLEAESLLEAPSAWLLGNEAHGLPSEALSRADAVVSIPIYG 281 Query: 259 IIKALNVSNAAAVALYITQN 278 ++LNV+ AAAV LY + Sbjct: 282 KAESLNVAAAAAVCLYASAR 301 >gi|256825192|ref|YP_003149152.1| rRNA methylase [Kytococcus sedentarius DSM 20547] gi|256688585|gb|ACV06387.1| rRNA methylase [Kytococcus sedentarius DSM 20547] Length = 269 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 87/238 (36%), Gaps = 6/238 (2%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHP 90 + + R + + AL +L T + L Sbjct: 19 LTDVALRRRLEPERGLYMAESEKVIRRALAAGHVP-RSMLLTPRWVEDLAELVAEVEATG 77 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 PV P ++ + G LA P L D + ++ ++V++ V D N+GAI Sbjct: 78 APVYVAEPAVVESMTGFHLHRGALAAMQRPELPAVADLLGGARRVVVVEDVVDHTNVGAI 137 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 RS A D ++ T R + + + G + +P+ RI + ++ GF Sbjct: 138 FRSVAALGADAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIDPWPAGMAELQGAGFTVA 197 Query: 211 G---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 +++AL+LG EG GL P+T E A + M G + +LNV Sbjct: 198 ALALRDDAVTMQQLAADPPERLALVLGTEGDGLAPQTVEGADLAVRIPMSGGVDSLNV 255 >gi|153008909|ref|YP_001370124.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188] gi|151560797|gb|ABS14295.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC 49188] Length = 275 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 67/279 (24%), Positives = 115/279 (41%), Gaps = 17/279 (6%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 MN + + D + +L +RD ++ ++ R G V Sbjct: 1 MNQ-DTHSHGCVQQIDDPNDIRLSP-YRDIREKDLVGRQQR-------FIAEG-KVVLNV 50 Query: 61 L--NNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQG---L 114 L ++ + LL +N LA L LP PV +VP +D + G Sbjct: 51 LFSSSARFETESLLVLENRLAGLGEQLSQLPSEVPVYSVPQTVMDAVAGFHVHRGILAVG 110 Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 +T P L LD + L++VL +++ N+G+I R+A AF D ++ Sbjct: 111 RRKTPPSLQAMLDTLPAKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDDTCCDPLYR 170 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + GA +PY ++ + + + F + LS S + K+ + AL+LG Sbjct: 171 KAIRVSVGATLKVPYFHGGSIDEIIAALGDADFNLLALSPSSSLSVYDATKHGRQALLLG 230 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 EG+GL P+ E A + M +LNV+ A+ +AL Sbjct: 231 TEGEGLPPRLLEKL-QTARIPMSTAFDSLNVATASGIAL 268 >gi|311277429|ref|YP_003939660.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae SCF1] gi|308746624|gb|ADO46376.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae SCF1] Length = 229 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 56/151 (37%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 16 RQPDLTVCMEQVHKPHNVSAIVRTADAVGVHEV-HAVWPGNRMRTMASTAAGSNSWVSVK 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + Q SDS + +++G E G+ + A Sbjct: 75 THRTIGDAVAQLKGRGMQILATHLSDSAVDFREIDYTRPTCILMGQEKTGITEEALALAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 QDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|227823292|ref|YP_002827264.1| putative rRNA methylase [Sinorhizobium fredii NGR234] gi|227342293|gb|ACP26511.1| putative rRNA methylase [Sinorhizobium fredii NGR234] Length = 276 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 96/250 (38%), Gaps = 14/250 (5%) Query: 41 RHTS---QPENLFLYGVHTVSAALNNPSR-----KIFQLLATKNALARLDWDAN-LPHPF 91 + + G V L R +L +N LA L P Sbjct: 24 KERDLTGRQGRFIAEGT-VVLRLLAAAHRAGRGITAEAILLLENRLAGLAELLAEFPADV 82 Query: 92 PVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV + D I G V + P + A+ S L++ +++ N+G Sbjct: 83 PVFVADARVFDAIAGFNMHRGVLALGRSDAVPDRDALIAALPASSLVLAACGLSNHDNMG 142 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++ R+A AF D ++ + + G++ +P+ R + ++++H+ GF Sbjct: 143 SLFRNAAAFGVDAVLMDAASCDPMYRKSIRVSVGSVLTLPFARQGTAAELIERLHAAGFA 202 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 GLS + + + ++AL++G EG+GL A + + +LNV+ A Sbjct: 203 IWGLSPRGETEVTEIPPAQRVALLVGTEGEGLPQAVLSAV-RTARIRQRPGLDSLNVAMA 261 Query: 269 AAVALYITQN 278 A +AL+ Sbjct: 262 AGIALHEVAR 271 >gi|283836029|ref|ZP_06355770.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter youngae ATCC 29220] gi|291068213|gb|EFE06322.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter youngae ATCC 29220] Length = 229 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASSAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + Q SD + +++G E G+ + Sbjct: 69 SWVQVKTHPTISDAVTQLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALDLADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|281424397|ref|ZP_06255310.1| RNA methyltransferase, TrmH family [Prevotella oris F0302] gi|281401666|gb|EFB32497.1| RNA methyltransferase, TrmH family [Prevotella oris F0302] Length = 250 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 91/255 (35%), Gaps = 16/255 (6%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K ++S K ++ Q G V L + L+AT+ L P Sbjct: 8 KFIKSLQLK-KNREQTRLFIAEGHKLVEELLAMS--RAHTLVATQEWLDSHS----APPA 60 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 V V + K+ + Q L L P + A+ S L ++LD + DP N+G I Sbjct: 61 DEVIEVTSDELRKVSLLQHPQQVLGLF--PFFASDTHAINTSTLSLMLDGIQDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A F + I ++ + + + ++ G++ + + Q I Sbjct: 119 IRIADWFGINDIYCSQETADMYNPKVIQATMGSITRVRLHYGALEPMLRQ---LPADFPI 175 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNVS 266 + + E + +I+G EG G+ + ++ + ++LNV+ Sbjct: 176 YGTLLEGNDIYNEQLSAHGLIIMGNEGNGISAQIRQMVNCPLLIPNYPPNTPTAESLNVA 235 Query: 267 NAAAVALYITQNHFA 281 A A+ + Sbjct: 236 IATAITCAEFRRRIK 250 >gi|104773970|ref|YP_618950.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423051|emb|CAI97747.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325125661|gb|ADY84991.1| Putative rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 291 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 49/295 (16%), Positives = 101/295 (34%), Gaps = 24/295 (8%) Query: 1 MNLISKKKS-EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59 M+ I ++ + +I + D + + + + Sbjct: 1 MDRIDRENNLIRINAFDDPRLK-------LFTDYNEAQLFHYYEPEAGIFIAESPKVIER 53 Query: 60 ALNNPSRKIFQLLATK-------NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 A+ I L+ K + L + + FP+ + ++ G + Sbjct: 54 AIRAGYEPIAMLVEEKALERDLADFDRELAANDDHLLDFPIFVAQSDLLRQLPGYNLLRG 113 Query: 113 GLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 + + + VL+ V +P N+GAI RSA A DG++ T S Sbjct: 114 AICAFRRKKRPSLREFAAALPKHARVGVLESVVNPTNVGAIFRSAAALGMDGVLITTDSS 173 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDAL------QKMHSWGFQTIGLSSDSKKPLEQE 223 + + G + +P+ + Q++ + Sbjct: 174 DPLYRRSGRVSMGTVFQVPWTYLDRKLWREKGVASLQELGFKTAAMALRDNTVDIDDPAL 233 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + D++A+ILG+EG GL P+T + + M + +LNV+ A+A+A + + Sbjct: 234 KEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKK 288 >gi|288550202|ref|ZP_05969599.2| hypothetical protein ENTCAN_08219 [Enterobacter cancerogenus ATCC 35316] gi|288316108|gb|EFC55046.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cancerogenus ATCC 35316] Length = 218 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ AI+R+A A + +++ +A Sbjct: 5 RQPDLTVCMEQVHKPHNVSAIVRTADAVGVHEV-HAVWPGARMRTMVSAAAGSNSWVSVK 63 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + SD + +++G E G+ + + A Sbjct: 64 SHQTIGDAVSHLKGRGMQVLATNLSDKAVDFREIDYTRPTCILMGQEKTGISQEALDLAD 123 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 124 RDIIIPMIGMVQSLNVSVASALILYEAQRQR 154 >gi|332199288|gb|EGJ13366.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA41317] gi|332199985|gb|EGJ14059.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA47901] Length = 212 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 86/219 (39%), Gaps = 10/219 (4%) Query: 58 SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 A+ I ++ A +N +L FP + I + QG+ Sbjct: 3 EEAVQAGVT-IEKIFALENYRNQLAA-------FPQTVWISEDILLDLADSQTPQGIVAV 54 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 D + L + + V DP N+G I+R+A A G+I + + + S Sbjct: 55 VQKEEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTL 112 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S G+ H+P R+++ + S + + L++G EG Sbjct: 113 RSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEG 172 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 173 QGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 211 >gi|320096169|ref|ZP_08027762.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319976914|gb|EFW08664.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 299 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 97/268 (36%), Gaps = 20/268 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY +++ ++R + ++ AL+ L + L L Sbjct: 18 DYTRLKDVKLRARLEPERGLYMAESTSVITRALDAGHSP-RSFLMAQRHLPGLAGAIESA 76 Query: 89 HP------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLM 136 P+ T P + ++++ G LA P L + ++ ++ Sbjct: 77 TGSADGGPVPIFTAPEEVLEQLTGFHLHRGALAAMHRPALPRADELLATARGGAPARRVV 136 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VL+ + D N+GA+ RSA A D ++ T + + + G + +P+ R+ Sbjct: 137 VLEDLVDHTNVGAVFRSAAALGVDAVLVTPSCADPLYRRSVRVSMGTVFQVPWTRLEAWP 196 Query: 197 DALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 D + D K+A+++G EG GL +T + Sbjct: 197 DMGALHGAGFTVAALALSDEAVPLDDFAALPVLAAPGAKLAMVMGTEGDGLGRRTIAASD 256 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 + M + +LNV+ A+AV + T+ Sbjct: 257 YTVRIPMEHGVDSLNVAAASAVVFWATR 284 >gi|317181870|dbj|BAJ59654.1| hypothetical protein HPF57_0580 [Helicobacter pylori F57] Length = 227 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + LN+ K+ ++ +K + + L P + + K Sbjct: 4 VIYGKQVIMHILNSYQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ +L V+ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLAKVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + ++ T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|313611167|gb|EFR85991.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Listeria monocytogenes FSL F2-208] Length = 59 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 29/54 (53%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A+++G+EG G+ +E + HL M G + +LN S AA++ LY Sbjct: 1 MPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYRKR 54 >gi|118384277|ref|XP_001025291.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila] gi|89307058|gb|EAS05046.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila SB210] Length = 293 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 103/243 (42%), Gaps = 19/243 (7%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA------NLPHPFPVKTVPPQTIDK 103 F+YG++ AL++ R I +++ ++ + L PVK V + +D+ Sbjct: 37 FVYGLNPTMIALHSNKRNIVEVIINQHVQSHLPPKISNIINTANAKKIPVKFVDREKLDR 96 Query: 104 IVGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +V + + L + +++ LD + DP N GAI+R+ D + Sbjct: 97 LVQNQPHQNVVIKAEPLKYLRTKSSDILQGNMILFLDRITDPQNFGAIIRTCQYLGVDNV 156 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + + + ++K++SGALE + + + L+ G++ + + Sbjct: 157 VVDEFSRCPLNPTVSKTSSGALEVMDIYCTPDPVEFLKDCQLRGWKVYSTGLNHSENQIS 216 Query: 223 -EIKNDKIALILGAEGKGLRPKTQETATSMAHL--------HMPGI---IKALNVSNAAA 270 E DKI L++G EG G+ PK + + + + M I +LNV++A + Sbjct: 217 LEKLKDKIVLVMGNEGNGVDPKILKVSDKIVSIDQTLYLNRPMVFPYTLIDSLNVNSATS 276 Query: 271 VAL 273 + + Sbjct: 277 ILI 279 >gi|319781799|ref|YP_004141275.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167687|gb|ADV11225.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 271 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 90/236 (38%), Gaps = 5/236 (2%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-HPFPVKTVPPQTIDK 103 + G + L L +N LA LD + PV +D Sbjct: 28 RQGRFVAEGKVVLDLLLTTGRFAAESALVLENRLAGLDKILSKAPADLPVYVATSAVMDA 87 Query: 104 IVGKEAVHQGLALE---TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 I G LA+ LD + L++VL + + N+G+I R+A AF D Sbjct: 88 IAGFHMHRGILAMGRKGAPQPAEALLDGLPPRALVVVLVGIANHDNVGSIFRNAAAFGAD 147 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ + + GA IP+ ++ + GF+ LS K + Sbjct: 148 AVLLDATCCDPLYRKAIRVSVGAALKIPFASFTDTAGFTTTLARRGFEQFALSPRGKTDI 207 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +++++AL LG EG+GL + + M +LNV+ A+A+AL+ Sbjct: 208 RDAQRSERLALYLGTEGEGLPDDLLASL-HNVRITMAEGFDSLNVAAASAIALHHF 262 >gi|254507286|ref|ZP_05119422.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus 16] gi|219549746|gb|EED26735.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus 16] Length = 227 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 2/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A + + + SA Sbjct: 16 RQADLTLCLEEVHKPNNVSAVIRTADATGVHKVHAV--WPNEMRTLSHTSAGARNWVDVE 73 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S + + S++ + A+ILG+E G + ++ A Sbjct: 74 THDSIEDAINELKSQGMQVLVTNLSETAVDFREIDYTKPTAIILGSEKTGASEQAKQLAD 133 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+AV LY Q Sbjct: 134 QDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164 >gi|317050128|ref|YP_004117776.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. At-9b] gi|316951745|gb|ADU71220.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. At-9b] Length = 231 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ A++R+A A + S +++ SA Sbjct: 16 RQHDLTVCMEQVHKPHNVSAVIRTADAVGIHEV-HAVWPSVRMRTMVSASAGSNSWVKVK 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + S + +++G E G+ + A Sbjct: 75 THRNITDAVSHLKTQGMQVLATNLSAKAVDFREIDYTRPTCILMGQEKTGITAEALALAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 165 >gi|297564557|ref|YP_003683529.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus silvanus DSM 9946] gi|296849006|gb|ADH62021.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus silvanus DSM 9946] Length = 228 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 53/170 (31%), Gaps = 7/170 (4%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-------TTKRYSPSE 172 + A R L ++++ V+ HN A+LRS A Sbjct: 6 WQKIQQVLARRQPDLTVLMERVHKWHNFSAVLRSCDAVGVLEAHLIPAAHGIPTEDQNPS 65 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 A S S A + S + ++ Sbjct: 66 RHTAATSGSAAKWVGLRTYPDTPSAFADLRSRGFVIYAAHFSHKAIDYREVDYTRPTCIL 125 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 LG E G+ + A + M G++++LNVS AAAV L+ Q + Sbjct: 126 LGTEKWGVTEEAATLADGHIVIPMMGMVQSLNVSVAAAVILFEAQRQRIQ 175 >gi|32267245|ref|NP_861277.1| hypothetical protein HH1746 [Helicobacter hepaticus ATCC 51449] gi|32263298|gb|AAP78343.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 229 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 83/224 (37%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + L+ + I ++ K L + + P+K V + + + Sbjct: 2 IVYGKQPILYILHTNASCIEEIYLAKE-LPKDIFKQLAQLDKPIKRVDMKK-AQALAHGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ P +L+ +++ L+VL +V D NIG+I R+A A G++ Sbjct: 60 NHQGILASIIPPSPLSLNDLKSKDSLLVLYNVTDVGNIGSIFRTAYALGVGGVVICLSNL 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 ++ S + + + + + K Sbjct: 120 SQKAIESIARLSSGAFLHMPYGVFPHIFDIINELKNADFMLIGADMQGQESCNV--KKKW 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL + + ++ + M +LNV+ A + + Sbjct: 178 ALFLGSESEGLSARLKHKLDTILSIKMEHHFDSLNVAVATGILI 221 >gi|228937394|ref|ZP_04100040.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970280|ref|ZP_04130939.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976850|ref|ZP_04137262.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407] gi|228782820|gb|EEM30986.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407] gi|228789389|gb|EEM37309.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822227|gb|EEM68209.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 161 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 80/154 (51%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + ++LD + DPHN+G+I+R+A A GII KR + +A +AK+++GA+E+ Sbjct: 3 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 62 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 IP R++NL+ + ++ G G + K I L++G+EGKG+ E Sbjct: 63 IPVARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGE 122 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L M G + +LN S AA++ +Y Sbjct: 123 KCDFLITLPMVGKVTSLNASVAASLLMYEVYRKR 156 >gi|229027939|ref|ZP_04184092.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1271] gi|229170943|ref|ZP_04298544.1| tRNA/rRNA methyltransferase [Bacillus cereus MM3] gi|228612483|gb|EEK69704.1| tRNA/rRNA methyltransferase [Bacillus cereus MM3] gi|228733327|gb|EEL84156.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1271] Length = 175 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 80/154 (51%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + ++LD + DPHN+G+I+R+A A GII KR + +A +AK+++GA+E+ Sbjct: 17 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 76 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 IP R++NL+ + ++ G G + K I L++G+EGKG+ E Sbjct: 77 IPVARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGE 136 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L M G + +LN S AA++ +Y Sbjct: 137 KCDFLITLPMVGKVTSLNASVAASLLMYEVYRKR 170 >gi|238764307|ref|ZP_04625258.1| tRNA guanosine-2'-O-methyltransferase [Yersinia kristensenii ATCC 33638] gi|238697458|gb|EEP90224.1| tRNA guanosine-2'-O-methyltransferase [Yersinia kristensenii ATCC 33638] Length = 231 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + L+ V+ PHN+ AI+R+A A I +P L+ +A Sbjct: 10 CEMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQI-HAIWPTPEMYTRLSSAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 SD + +++G E G+ + Sbjct: 69 SWVQVKTHSDITEAITHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISKE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALAMADKDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|188527602|ref|YP_001910289.1| hypothetical protein HPSH_04120 [Helicobacter pylori Shi470] gi|188143842|gb|ACD48259.1| hypothetical protein HPSH_04120 [Helicobacter pylori Shi470] Length = 227 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + LN+ K+ ++ +K +L + L P + + K Sbjct: 4 VIYGKQVIMHILNSHQEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLAKVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + ++ T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 TLFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|289428953|ref|ZP_06430633.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] gi|289157954|gb|EFD06177.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] Length = 208 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 9/202 (4%) Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLD 139 H + +D++ G + HQG+AL T+ L++ LD Sbjct: 4 ADHGIALMQATRGELDRMTG-GSNHQGVALRLPEYEYATVGDLIAAGTQTYRGGLVVALD 62 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DP N+GAI+RSA AF G++ R S S +A K+++GA IP +NL AL Sbjct: 63 KVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARIPVAMATNLNQAL 122 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 K + G+ +GL+ ++ + + +++G+EG GL T+++ +A + + Sbjct: 123 GKFAAAGWMIVGLAGEADSDFASAPGFDGPLVIVVGSEGDGLARLTRQSCDVLASIPISS 182 Query: 259 IIKALNVSNAAAVALYITQNHF 280 +++LN S AA++ALY Sbjct: 183 DVESLNASVAASIALYEAARMR 204 >gi|297180013|gb|ADI16238.1| rRNA methylases [uncultured bacterium HF0010_16H03] Length = 241 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 92/237 (38%), Gaps = 2/237 (0%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDK 103 + EN G H++ + + + KI ++ N R++ + + + + Sbjct: 3 KKENDLRIGFHSIKSIVEHNPHKIKKISLPANRNDLRINQLITVLDQNSINYEFSNKVKQ 62 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + + L+++LD+V DP N+GA +R A D +I Sbjct: 63 EPEAIVSNDPELNFKDLKKYLN-SNLVIQPLILILDNVIDPRNLGACIRCAAVAGVDAMI 121 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K +AV K + G E I ++NL + L+ ++ GLS + + + Sbjct: 122 INKHQCAPLNAVAHKVSVGGAEVIKLFHVTNLINCLKFLNEKNINIYGLSEHADESYHEC 181 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ALI+GAE G+R KT E +L + K+ NVS A + L Sbjct: 182 NFKFATALIMGAEESGIREKTLERCDHKINLSGNKLFKSFNVSVATGIILSEANRQR 238 >gi|189346347|ref|YP_001942876.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium limicola DSM 245] gi|189340494|gb|ACD89897.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium limicola DSM 245] Length = 219 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 59/151 (39%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L +V+D+VN HN+ A++RS A I R + A A + Sbjct: 17 RQTSLTVVMDNVNKSHNLAALVRSCDAAGIHEIHAVSRRKHIFTRHNAA-AGSSKWVNIN 75 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + S++ + ALILGAE G+ A Sbjct: 76 LYHDIESVYRRLRDDGMQVLAAASTEKSVDFREIDYTLPTALILGAEWDGISEDAISGAD 135 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A AV +Y Q Sbjct: 136 RCIGVPMFGMVESLNVSVAGAVIIYEAQRQR 166 >gi|317485615|ref|ZP_07944491.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6] gi|316923152|gb|EFV44362.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6] Length = 196 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 55/152 (36%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L +VL +++DPHN+ AI RSA AF + + SAS Sbjct: 19 WRQKDLTLVLANIHDPHNVSAIYRSADAFGVAALHLYYTDTAFPELGKKSSASARKWVES 78 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 S + KPL A+I+G E G+ + Sbjct: 79 VRHRSAEELYAALKAGGHQILATSCTPESKPLGAYDFTKPTAVIMGNEHSGVPAELNSLV 138 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ M G+I++ NVS AAAV L Sbjct: 139 DGEVYIPMYGMIQSFNVSVAAAVILSEASRQR 170 >gi|77360023|ref|YP_339598.1| RNA methyltransferase, TrmH [Pseudoalteromonas haloplanktis TAC125] gi|76874934|emb|CAI86155.1| RNA methyltransferase, TrmH family [Pseudoalteromonas haloplanktis TAC125] Length = 257 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 38/249 (15%), Positives = 83/249 (33%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K ++ QK ++ Q + G V LN+P + + + AT+ + + Sbjct: 22 KLIRQLGQK-KYRKQFNQYLVQGEKNVLELLNSPLKAVD-IFATEAFINTYQAQYLGIN- 78 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + + + + L L++ LD V+DP N+G I Sbjct: 79 ---FICAEEELLTKASTLVSNNAAIAIVNMPQAAQLQTSG---LILALDGVSDPGNLGTI 132 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + I+T+ + + + + G+ + ++ + Sbjct: 133 IRVADWYGIKHIVTSTDSADAYNPKTISATMGSFVRVSVSQVDLPAHLATLKLPIYGAFL 192 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + L++G+E G+R + T + G ++LNV+ A Sbjct: 193 DGENVHN-----TQFTGSGVLLMGSESHGIREACAKLVTDKITIPAFGQAESLNVAMATG 247 Query: 271 VALYITQNH 279 + L + Sbjct: 248 IILDNFKRQ 256 >gi|238918012|ref|YP_002931526.1| tRNA guanosine-2'-O-methyltransferase [Edwardsiella ictaluri 93-146] gi|238867580|gb|ACR67291.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 230 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ A++R+A A + S +++ +A Sbjct: 10 CQMMAARQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQV-HAVWPGKSMRTLVSTAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + S + + +++G E +G+ + Sbjct: 69 SWVSVKTHRDIAAAVGELKGQGMQILATNLSATAVDFREIDYTRPTCILMGQEKRGISAE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALQLADRDIIIPMVGMVQSLNVSVASALILYEAQRQR 165 >gi|261823688|ref|YP_003261794.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium wasabiae WPP163] gi|261607701|gb|ACX90187.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium wasabiae WPP163] Length = 230 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R L + ++ V+ PHN+ A++R+A A + + +++ +A Sbjct: 14 NCRQPDLTICMEQVHKPHNVSAVIRTADAVGVHQV-HAIWPTSRMKTLVSSAAGSNSWVQ 72 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + S+ + ++LG E G+ + + Sbjct: 73 VKTHRTIRDAVGHLKAEGMQVLATNLSEHAVDFREIDYTRPTCILLGQEKTGITDEALKL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQR 165 >gi|86741865|ref|YP_482265.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3] gi|86568727|gb|ABD12536.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3] Length = 297 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 94/251 (37%), Gaps = 10/251 (3%) Query: 35 SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94 ++ + + GV V AAL ++ ++ +A R + Sbjct: 37 RRLKRPAARREQGRFLVEGVQAVGAALAVG--ELLEVFVGVSATPRHEELLRAVRVPVRV 94 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 E V + A L + L + +L+ V DP N G ++RSA Sbjct: 95 VTDEAV---ASLSETVTPQGLVAVAALPAHRLADLHAPRLVAVCIGAGDPGNAGTVIRSA 151 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 A D ++ T +S++G+ H+P I L L ++ + G + + S Sbjct: 152 DAAGADAVVFTGSGVDPFGGKCVRSSAGSHFHLPVIVEPALAGVLDRLRARGCRIVATSG 211 Query: 215 DSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + + ++ + A + G E GL T A ++ + + G ++LN++ A+A Sbjct: 212 AADRDIDTAVAAGELDGPTAWLFGNEAHGLASATLAAADAVLRVPVYGQAESLNLAVASA 271 Query: 271 VALYITQN-HF 280 + LY + Sbjct: 272 LCLYASARAQR 282 >gi|301633558|gb|ADK87112.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma pneumoniae FH] Length = 239 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 95/237 (40%), Gaps = 11/237 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 E FL+G AL+N + L+ K + + Q + Sbjct: 2 QETSFLFGSKAFLEALDNQLQIKKVNLSDK---HQKLLGLIKKRGLRYEMHSSQWFHQQF 58 Query: 106 GKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + + + + T++ +++ L++LD + D HN GAILR+ +A Sbjct: 59 RHINHQEFVCVINPNQMLKTIEQLIQITDSKSTSTLVMLDEIQDLHNFGAILRTCMAAEV 118 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSDSK 217 DGII K ++ + +++ G + + ++++N + H + L K Sbjct: 119 DGIIFKKHNQAPINSTVIRTSMGTVFYQNLVQVTNLSYAITTLQKHGFWTVATTLDERLK 178 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +++ DK L++G E KGL + A + M + +LNVS A + L+ Sbjct: 179 PKDYRQVDFDKRILLVGNEDKGLNALLLKNADLKVKIPMNPKLNSLNVSVAVGIILF 235 >gi|269115011|ref|YP_003302774.1| tRNA/rRNA methyltransferase [Mycoplasma hominis] gi|268322636|emb|CAX37371.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114] Length = 241 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 44/253 (17%), Positives = 88/253 (34%), Gaps = 21/253 (8%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 A K + + + + + G H V A+ Sbjct: 2 AITSTQDPKILKYKKLLT-PKGRQEQQLFIVEGYHLVKEAIEAN---------------- 44 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 + D + Q I+ + Q A L+ N ++ L+ Sbjct: 45 IVIDILEFNDILTYKNSTQVTRAIIKTLSTTQTPQNIIAICKIQNLNIKANK--IIALNK 102 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP NIG I R A +F D +I +E + + + +I + + Sbjct: 103 LQDPGNIGTIFRLAKSFGFDSVIVENIDIYNEKIIRSSQGAMFSLNIIKTNDLSKELSAF 162 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 K + + L+ +S K + + +N KI ++LG EG G+ K + + ++ + Sbjct: 163 KKDDFLVYSTTLNKNSIKLNDIDFRNKKIVIVLGNEGNGIDEKIIDLSDFNVYVPI--EF 220 Query: 261 KALNVSNAAAVAL 273 ++LNV+ A+ + Sbjct: 221 ESLNVACCGAIIM 233 >gi|186686113|ref|YP_001869309.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102] gi|186468565|gb|ACC84366.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102] Length = 153 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 1/146 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL + P N G I R+ A + + L ++ ++ +L Sbjct: 4 VVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYHESL 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 G + +G + L+ G+E GL P + ++ Sbjct: 64 EAFKTVHQERGGRWLGYTVGGNFSYVSFRYQADDWLLFGSETTGLPPTILSDCDATLYIP 123 Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280 M +++LN+S + A+ L+ T+ Sbjct: 124 MSQPGVRSLNLSVSVAIGLFETRRQL 149 >gi|329944512|ref|ZP_08292677.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170 str. F0386] gi|328530277|gb|EGF57156.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170 str. F0386] Length = 304 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 103/260 (39%), Gaps = 7/260 (2%) Query: 26 NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--L 81 ++ ++ + ++ + G V A+ + ++ + T+ A+ R Sbjct: 42 SNPASARISRVAGLSRRNARTKHRRFLVEGPQGVREAIRHTPERVLDVYLTEAAVERHGE 101 Query: 82 DWDANLPHPFPVKTVPPQTIDKI-VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 W + V Q +D + + V +A A+ ++L+ VL Sbjct: 102 IWHEAVAAERYVHVASEQVMDAMSTDAQGVLAVVAAAEVTGSEALATALDGARLVAVLTQ 161 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 DP N G I+R+A A D ++ + + + +S +G+L H+P I L DA+ Sbjct: 162 AQDPGNAGTIIRAADAAGADAVVLVRGSVDPTAPKVVRSTAGSLFHLPVITGVALDDAVA 221 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 +H G + L + A +LG E GL + A ++ + + G Sbjct: 222 ALHEAGLTVLAADGRGDFDLFEAESLLEAPSAWLLGNEAHGLPSEALSRADAVVSIPIYG 281 Query: 259 IIKALNVSNAAAVALYITQN 278 ++LNV+ AAAV LY + Sbjct: 282 KAESLNVAAAAAVCLYASAR 301 >gi|89076058|ref|ZP_01162418.1| putative tRNA methyltransferase [Photobacterium sp. SKA34] gi|89048210|gb|EAR53792.1| putative tRNA methyltransferase [Photobacterium sp. SKA34] Length = 241 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 56/151 (37%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ P+N+ AI+R+A A + + + SA Sbjct: 16 RQPDLTVCMEEVHKPNNVSAIIRTADAVGVHKV-HAVWPKENMKVLSHTSAGARNWVELD 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S + SD+ A+ILG E G+ + A Sbjct: 75 THDSMVEAVQTLKDQGMQVLATNLSDTAIDFRDVDYTKPTAVILGGEKNGITAEALAMAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 165 >gi|256372653|ref|YP_003110477.1| RNA methyltransferase, TrmH family, group 3 [Acidimicrobium ferrooxidans DSM 10331] gi|256009237|gb|ACU54804.1| RNA methyltransferase, TrmH family, group 3 [Acidimicrobium ferrooxidans DSM 10331] Length = 251 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 122/224 (54%), Gaps = 2/224 (0%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 + G V R++ +++ +A PV+ +PP+ ++ V + V Sbjct: 19 VEGRRAVLECFRAGRRRVRRVIVEAGREPEAIIEAAARAGVPVELLPPERFER-VARTEV 77 Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 HQG+ + P++ LD + + LL+V+DH+ DPHN+GA+LRSA AF DG++ + S Sbjct: 78 HQGVLADCDPVVDVGLDGLADGSLLVVVDHLEDPHNLGAVLRSAAAFGADGVVLPRYRSV 137 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKI 229 + + K A+G +E + + +S++ AL+++ + G ++GL +D+ + +++ Sbjct: 138 PLTPTVTKVAAGGVEWLRFALVSSIPAALRRLRARGVWSVGLDADAATSVFSLTLATERL 197 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL++GAEG+GL P + A + + + +LN S AA++AL Sbjct: 198 ALVVGAEGRGLAPLVRRGVDVTAAIPLAATVASLNASVAASIAL 241 >gi|121608425|ref|YP_996232.1| tRNA/rRNA methyltransferase SpoU [Verminephrobacter eiseniae EF01-2] gi|121553065|gb|ABM57214.1| tRNA/rRNA methyltransferase (SpoU) [Verminephrobacter eiseniae EF01-2] Length = 274 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 92/250 (36%), Gaps = 10/250 (4%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 R++ K+++ Q S + L+L G H AAL R + A Sbjct: 12 RDNAFVKELRRLAQDSTAYRRQGRLWLEGEHLCRAALARQLRPSIAVFAESFWPQAQAEY 71 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 A V + + + + +L + +VLD V D Sbjct: 72 AQDASKI---MVLAEPLFAGISALESPARMGFILDLPAPASLQPGAAT---VVLDRVQDA 125 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G+ILRSA AF ++ K + S + ++ GA ++ + Sbjct: 126 GNMGSILRSAAAFGFRQVLALKGSAALWSPKVLRAGMGAHF----ALNLIEAAGPAELQA 181 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + S + + L + A I+G EG+G+ P A + PG ++LN Sbjct: 182 LQLPMLVTSPHAGEYLHRATLPWPCAWIMGHEGQGVTPALTAKAALRIRIAQPGGQESLN 241 Query: 265 VSNAAAVALY 274 V+ AAA+ L+ Sbjct: 242 VAAAAAICLH 251 >gi|50119000|ref|YP_048167.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|49609526|emb|CAG72959.1| putative tRNA (guanosine-2'-O)-methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 230 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R L + ++ V+ PHNI A++R+A A + + +++ +A Sbjct: 14 NCRQPDLTICMEQVHKPHNISAVIRTADAVGVHQV-HAIWPTSRMKTLVSSAAGSNSWVQ 72 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + S+ + ++LG E G+ + + Sbjct: 73 VKTHRTIQDAVGHLKNEGMQVLATNLSEHAVDFREIDYTRPTCILLGQEKTGITAEALKL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQR 165 >gi|114319697|ref|YP_741380.1| tRNA guanosine-2'-O-methyltransferase [Alkalilimnicola ehrlichii MLHE-1] gi|114226091|gb|ABI55890.1| tRNA guanosine-2'-O-methyltransferase [Alkalilimnicola ehrlichii MLHE-1] Length = 220 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 54/151 (35%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L ++LD V+ PHN+ AILR+ A R+ + A S+ Sbjct: 16 RQPDLQVLLDQVHKPHNLSAILRTCDAVGVPRAHAVSRHQD-FTVHRAASSGTGQWVAVE 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S+ Q L+LGAE +G+ + A Sbjct: 75 THADLPAAVRAVQGQGMKVYAAHLSEQAVDYRQVDYTKPCCLLLGAEKEGVSEEGAALAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G+ +LNVS AAAV L+ Q Sbjct: 135 GHVIIPMFGLGASLNVSVAAAVILFEAQRQR 165 >gi|254412961|ref|ZP_05026733.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC 7420] gi|196180125|gb|EDX75117.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC 7420] Length = 153 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 1/149 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G + R+ A + + L ++ ++ + Sbjct: 1 MLRVVLVCPQIPPNTGNVARTCAATDTELHLVGPLGFEISDRYLKRAGLDYWPYVKFHYH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 L Q G + IG S+ + Q L G+E +GL P + Sbjct: 61 ETLEAFNQVSQKLGGRWIGFSTSGQYSYVQFQFQPNDWLFFGSETQGLSPSVLTRCGATV 120 Query: 253 HLHM-PGIIKALNVSNAAAVALYITQNHF 280 + M +++LN+S +AA+ L+ + Sbjct: 121 VIPMTQPGVRSLNLSVSAALGLFEARRQL 149 >gi|300898586|ref|ZP_07116916.1| RNA methyltransferase, TrmH family [Escherichia coli MS 198-1] gi|300983468|ref|ZP_07176615.1| RNA methyltransferase, TrmH family [Escherichia coli MS 200-1] gi|300306932|gb|EFJ61452.1| RNA methyltransferase, TrmH family [Escherichia coli MS 200-1] gi|300357749|gb|EFJ73619.1| RNA methyltransferase, TrmH family [Escherichia coli MS 198-1] gi|324012714|gb|EGB81933.1| RNA methyltransferase, TrmH family [Escherichia coli MS 60-1] Length = 218 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 5 RQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASAAAGSNSWVQVK 63 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + SD+ + +++G E G+ + A Sbjct: 64 THRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALAD 123 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 124 RDIIIPMIGMVQSLNVSVASALILYEAQRQR 154 >gi|294673755|ref|YP_003574371.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23] gi|294473842|gb|ADE83231.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23] Length = 268 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 79/241 (32%), Gaps = 6/241 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 + + +++ ++ + AL + L K+ Sbjct: 16 FGTLTEAQLRNKLDAERGLFIAESPKVIRVALQAGYQPQALLCERKHITGDAADIIAACG 75 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDP 144 P+ T + + ++ G L ++V+D V D Sbjct: 76 DIPIYTGERELLAQLTGYTLTRGVLCAMRRKPELSVQQVLGSIPSGQKHRIVVIDGVVDT 135 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIGAI RSA A D ++ T+ + + + G++ +P+ + + + Sbjct: 136 TNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWLDSYDTLRSLGYQ 195 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + +++A I+G EG GL +T A + M + +LN Sbjct: 196 TAAMAL-TDKSISLDDPVLKQQERLAFIMGTEGDGLPQQTITNADFTVRIPMSHQVDSLN 254 Query: 265 V 265 V Sbjct: 255 V 255 >gi|237732567|ref|ZP_04563048.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226908106|gb|EEH94024.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 363 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 88/244 (36%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 119 RRQRAEETRVYGENACQALFQSRPDAIVRAWFVQSVTPRFKEALRWMAANRKAYHVVDEA 178 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L+ + +PHN+G ++RS Sbjct: 179 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVGQAGAQDCVLALEDIANPHNLGGMMRSCA 237 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I ++ D L G+ + SS Sbjct: 238 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDSIVDVLDDFRQAGYTVVMTSSA 296 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL +K+ L+LG E + L + G ++ LNVS A V L Sbjct: 297 KGKPLFTTTLPEKMVLVLGREREALPEAACSADDLCIAIDGTGKVETLNVSVATGVLLAE 356 Query: 276 TQNH 279 Sbjct: 357 WWRQ 360 >gi|308047831|ref|YP_003911397.1| tRNA guanosine-2'-O-methyltransferase [Ferrimonas balearica DSM 9799] gi|307630021|gb|ADN74323.1| tRNA guanosine-2'-O-methyltransferase [Ferrimonas balearica DSM 9799] Length = 235 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R L + L+ V+ PHN+ A++R+A A + + Sbjct: 15 MRQPDLTICLEDVHKPHNLSAMIRTADAIGVPEVHAVF-LGEDNRLRGGTATGSQQWVKV 73 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 S + S+ A+++G E G+ + A Sbjct: 74 NRHQSIGDAVARMREQGMQVIATNLSEKAVDFRSIDYTKPTAILMGQEKTGISQEALALA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 134 DHDVIVPMVGMVQSLNVSVASALLLYEAQRQR 165 >gi|56180485|gb|AAV83207.1| rRNA methylase SpoU [Idiomarina loihiensis L2TR] Length = 215 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 1/153 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +V+++V+ HN+ A++RSA A + + + + Sbjct: 5 RQPDLTVVMENVHKNHNLSAVVRSADAIGVHEM-HAIWLTKKARLSGGTALGSQNWVKIH 63 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + S+ + A++LG E G+ + + A Sbjct: 64 NHKTVGEALEATQGRGMQVVVTHLSEHSVDFREVDYTKPTAILLGQEKYGVTDEALDIAD 123 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G++++LNVS A AV LY Q + Sbjct: 124 YHVMIPMVGMVQSLNVSVAGAVMLYEAQRQREQ 156 >gi|320102938|ref|YP_004178529.1| tRNA/rRNA methyltransferase SpoU [Isosphaera pallida ATCC 43644] gi|319750220|gb|ADV61980.1| tRNA/rRNA methyltransferase (SpoU) [Isosphaera pallida ATCC 43644] Length = 284 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 92/276 (33%), Gaps = 40/276 (14%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 ++ ++ N + G V + R L+ + L Sbjct: 20 FRALKKQNVNRDGRR----FVVEGWKLVERLARSAHRLETVLVV--------EDQVELAR 67 Query: 90 PFPVKTV-----PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----------VRNSQL 134 PV+ + + + +VG HQG+ +PTL+ + Sbjct: 68 RLPVEELTIFTLSRERLRDLVGF-NFHQGVLGCGIRADAPTLNQLLAASQRVTARSGRSV 126 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++V + +P N+GA++R G++ S + + + GA P + SN Sbjct: 127 VLVCPALFNPENLGALIRLGDVMGAVGLVVGPGCPDPLSRRVTRVSMGASLAFPVVEASN 186 Query: 195 ------------LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + + + P ++ D++AL+LG+E GL P Sbjct: 187 VAAALDYLAGLGDHLLAAAVCEPAGPSALKPGATVVPFDRITWPDRVALLLGSEAHGLEP 246 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + A + + M +LN++ A + LY Sbjct: 247 CWVQRADQLTTIVMRPGADSLNLAVATGILLYHLTR 282 >gi|294638299|ref|ZP_06716552.1| tRNA guanosine-2'-O-methyltransferase [Edwardsiella tarda ATCC 23685] gi|291088552|gb|EFE21113.1| tRNA guanosine-2'-O-methyltransferase [Edwardsiella tarda ATCC 23685] Length = 219 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 59/151 (39%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ A++R+A A + S +++ +A Sbjct: 5 RQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQV-HAVWPGKSMRTLVSTAAGSNSWVSVK 63 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + S + + +++G E +G+ + + A Sbjct: 64 THRDIASAVSELKGQGMQILATNLSATAVDFREIDYTRPTCILMGQEKRGISAEALQLAD 123 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 124 RDIIIPMVGMVQSLNVSVASALILYEAQRQR 154 >gi|156936176|ref|YP_001440092.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter sakazakii ATCC BAA-894] gi|156534430|gb|ABU79256.1| hypothetical protein ESA_04075 [Cronobacter sakazakii ATCC BAA-894] Length = 229 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGNRMRTMASSAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + SD + +++G E G+ + Sbjct: 69 SWVEVKTHRNISDAVNHLKARGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITEE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALSLADQDIIIPMTGMVQSLNVSVASALILYEAQRQR 165 >gi|50290571|ref|XP_447717.1| hypothetical protein [Candida glabrata CBS 138] gi|49527027|emb|CAG60662.1| unnamed protein product [Candida glabrata] Length = 384 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 60/327 (18%), Positives = 117/327 (35%), Gaps = 60/327 (18%) Query: 7 KKSEKIFSL--KDSHYAKLR---RNHRDYKKMQSFNQKS------RHTSQPENLFLYGVH 55 KK +K SL +++H +L ++RD K K+ + P + +LYGV+ Sbjct: 54 KKRQKAGSLGKREAHEQRLDGICHSYRDNKNAHRQKFKNLYTNVTKFAINPLSEYLYGVN 113 Query: 56 TVSAALNNPSRKIFQLLATKNALARL-----DWDANLPHPFPVKTVPPQTIDKIV----- 105 + AAL + R F L + + + T ++ I Sbjct: 114 PILAALESDRRGYFTRLLHHDTNDKDSNKLTILRLCKEKGIKIDTADKHQLNLITKSAVH 173 Query: 106 --------------------------GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 + + + + + + + LD Sbjct: 174 NNMVLECKPLSIPEINSLQNVNIDTASFNVLQTDGITQWSKSEKFHNNERKKYPVGIYLD 233 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V DPHN+GAI+RSA D + +++ + V+AK++SGA++++P + Sbjct: 234 EVTDPHNMGAIIRSAFFLGADFVALSRKNCAAIGPVVAKTSSGAVDYLPMFYVDKPLKFF 293 Query: 200 QKMHSWGFQTIGLSSDSKKPL----------EQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + G+ + S K + I L++G E G+R ++ + Sbjct: 294 ELSQAEGWTVVSSSHGHSKKDVAKTLDLGDLHNMSHSMPILLVMGNEYSGIRTNLKQRSD 353 Query: 250 SMAHLHM---PGIIKALNVSNAAAVAL 273 + + + +LNVS A + L Sbjct: 354 FLVAIPQMTNNSTVDSLNVSVATGILL 380 >gi|13508094|ref|NP_110043.1| tRNA/rRNA methyltransferase [Mycoplasma pneumoniae M129] gi|2500862|sp|P75424|Y355_MYCPN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MG252 homolog gi|1674172|gb|AAB96129.1| tRNA/rRNA methyltransferase-like protein [Mycoplasma pneumoniae M129] Length = 242 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 95/237 (40%), Gaps = 11/237 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105 E FL+G AL+N + L+ K + + Q + Sbjct: 5 QETSFLFGSKAFLEALDNQLQIKKVNLSDK---HQKLLGLIKKRGLRYEMHSSQWFHQQF 61 Query: 106 GKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + + + + T++ +++ L++L + DPHN GAILR+ +A Sbjct: 62 RHINHQEFVCVINPNQMLKTIEQLIQITDSKSTSTLVMLHEIQDPHNFGAILRTCMAAEV 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSDSK 217 DGII K ++ + +++ G + + ++++N + H + L K Sbjct: 122 DGIIFKKHNQAPINSTVIRTSMGTVFYQNLVQVTNLSYAITTLQKHGFWTVATTLDERLK 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +++ DK L++G E KGL + A + M + +LNVS A + L+ Sbjct: 182 PKDYRQVDFDKRILLVGNEDKGLNALLLKNADLKVKIPMNPKLNSLNVSVAVGIILF 238 >gi|56480145|ref|NP_708432.2| putative methyltransferase [Shigella flexneri 2a str. 301] gi|56383696|gb|AAN44139.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] Length = 345 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 91/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVIQAGAQDCVLALENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGHNIVNVLHDFRQAGYSVVNTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 PL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGTPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|311695356|gb|ADP98229.1| tRNA guanosine-2'-O-methyltransferase [marine bacterium HP15] Length = 245 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 49/152 (32%), Gaps = 1/152 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L ++ D V+ P N+ AI+RS AF + A + + Sbjct: 16 RQPDLSVLTDQVHKPRNLSAIIRSCDAFGLA-NMHVVWPKEGFRAFRKTAGGSYNWVTTH 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S SD +ILG E G+ A Sbjct: 75 THRSMDEAIQSLKVQGHKLYAAQLSDRAIDFRDVDYTLPCTIILGNEVDGVSVDAAAQAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G++++LNVS+A A+ L Q Sbjct: 135 EHIVIPMMGMVESLNVSSACAIVLSEAQRQRK 166 >gi|293415850|ref|ZP_06658493.1| methyltransferase [Escherichia coli B185] gi|291433498|gb|EFF06477.1| methyltransferase [Escherichia coli B185] Length = 345 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 220 HFDVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLSE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|224538883|ref|ZP_03679422.1| hypothetical protein BACCELL_03779 [Bacteroides cellulosilyticus DSM 14838] gi|224519490|gb|EEF88595.1| hypothetical protein BACCELL_03779 [Bacteroides cellulosilyticus DSM 14838] Length = 227 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 79/212 (37%) Query: 54 VHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 + AL+ + L K+ + PV T + + + G Sbjct: 1 PKVIRVALDAGYEPLALLCEQKHITGDAADIISRCGDVPVYTGGRELLATLTGYVLTRGV 60 Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 L P D R+++ ++V+D V D NIGAI RSA A D ++ T+ + Sbjct: 61 LCAMRRPAPRTVEDTCRDARRIVVIDGVVDTTNIGAIFRSAAALGMDAVLLTRNSCDPLN 120 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + + G++ +P+ + L + ++A+++ Sbjct: 121 RRAVRVSMGSVFLVPWTWLDGTLSDLARHGFRTAAMALTDDSISIADPVLASEPRLAIVM 180 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G EG+GL P T A + + M + +LNV Sbjct: 181 GTEGEGLPPDTIAAADYVVRIPMAHGVDSLNV 212 >gi|193070365|ref|ZP_03051307.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E110019] gi|293413085|ref|ZP_06655753.1| conserved hypothetical protein [Escherichia coli B354] gi|192956304|gb|EDV86765.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E110019] gi|291468732|gb|EFF11225.1| conserved hypothetical protein [Escherichia coli B354] Length = 229 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T + A R L + ++ V+ PHN+ AI+R+A A + Sbjct: 1 MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + +A + SD+ + +++G Sbjct: 60 MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 120 QEKTGITEEALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|307128795|ref|YP_003880811.1| tRNA (Guanosine-2'-O-)-methyltransferase [Dickeya dadantii 3937] gi|306526324|gb|ADM96254.1| tRNA (Guanosine-2'-O-)-methyltransferase [Dickeya dadantii 3937] Length = 230 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R L + ++ V+ PHN+ A++R+A A + + +++ +A Sbjct: 14 NNRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQV-HAVWPTNRMRTLVSTAAGSNSWVQ 72 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + S S + ++LG E G+ Sbjct: 73 VETHRTVQDAVGHLKTQGMQILATNLSASAVDFREVDYTRPTCILLGQEKTGITADALAL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 133 ADQDIIIPMVGMVQSLNVSVASALILYEAQRQR 165 >gi|301018980|ref|ZP_07183203.1| RNA methyltransferase, TrmH family [Escherichia coli MS 69-1] gi|300399474|gb|EFJ83012.1| RNA methyltransferase, TrmH family [Escherichia coli MS 69-1] Length = 218 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 5 RQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASAAAGSNSWVQVK 63 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + SD+ + +++G E G+ + A Sbjct: 64 THRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALAD 123 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 124 RDIIIPMIGMVQSLNVSVASALILYEAQRQR 154 >gi|167911489|ref|ZP_02498580.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei 112] Length = 184 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +A + G EG G+ + +E AT + PG +++LNV+ AAAV L+ Sbjct: 120 YDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQ 178 >gi|154147987|ref|YP_001405828.1| RNA methyltransferase [Campylobacter hominis ATCC BAA-381] gi|153803996|gb|ABS51003.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter hominis ATCC BAA-381] Length = 226 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 81/224 (36%), Gaps = 5/224 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG L+ + ++ K L + + + + + + Sbjct: 2 IIYGKQLFLHILDVHKQNFKEIYLAKEIDKSLFAKISRL-GVKILKIDNKK-AQALAHGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG + + ++ ++ L++L +++D NIGAI+RSA A D I + Sbjct: 60 NHQGFLAKVDEFEFCEIADLKEAKFLVILWNLSDIGNIGAIVRSAYALGADAICVVSKN- 118 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 AS + I + L I ++ + ++ K Sbjct: 119 --LQIEGVIRASSGAAYEIKIARIDDGAGLINELKQIGFQIFAATMDGEDIKTAKIGAKT 176 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ALILG+EG+G+ K + M +LNVS A A+ Sbjct: 177 ALILGSEGEGIPQKIVTKCDHSVSIKMKHGWDSLNVSAAFAIIC 220 >gi|312194281|ref|YP_004014342.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EuI1c] gi|311225617|gb|ADP78472.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EuI1c] Length = 366 Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 13/234 (5%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVP-- 97 + + G + V AL L RL L + V Sbjct: 115 RRPGETDELVVGRNAVVEALRAGI-PAATLYVAGGLEFDERLTEARKLAGRAGMAVVDIG 173 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAIL 151 +D++ G A HQGLAL P D + LL+ LD V DP N+GA++ Sbjct: 174 RFELDRLCG-VAPHQGLALVVPPFRYAHPDDLLARARASDPGLLVALDGVTDPRNLGAVV 232 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTI 210 RSA AF G++ +R + +A K+++GA +P R +NL Sbjct: 233 RSAAAFGAQGVVVPERRAAGMTAAAWKTSAGAAARLPVARATNLNRTLRSYADGGLVVVG 292 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ + D I L++G+EG+GL E + + M G +++LN Sbjct: 293 LAANADVSLDDLAAATDPIVLVIGSEGRGLSRLVGENCDLLVRIPMAGEVESLN 346 >gi|317177613|dbj|BAJ55402.1| hypothetical protein HPF16_0805 [Helicobacter pylori F16] Length = 227 Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + LN+ K+ ++ +K + + L P + + K Sbjct: 4 VIYGKQVLMRILNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ L+ L V+ Q L+VL + D NIG I RSA +G+I ++ Sbjct: 62 NHQGVLARVELPLALPLKEVKKVQKLLVLCGITDVGNIGGIFRSAYCLGMEGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + ++ T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|288932987|ref|YP_003437046.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella variicola At-22] gi|290511781|ref|ZP_06551149.1| tRNA (guanosine-2'-O-)-methyltransferase [Klebsiella sp. 1_1_55] gi|288887716|gb|ADC56034.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella variicola At-22] gi|289775571|gb|EFD83571.1| tRNA (guanosine-2'-O-)-methyltransferase [Klebsiella sp. 1_1_55] Length = 229 Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ A++R+A A + S + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEV-HAVWPSSRMRTMASAAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + SD + +++G E G+ + Sbjct: 69 SWVQVKTHRTIADAVGHLKGQGMQILATHLSDKAIDFREIDYTRPTCILMGQEKTGITQE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|88809215|ref|ZP_01124724.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 7805] gi|88787157|gb|EAR18315.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 7805] Length = 229 Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 56/153 (36%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R S L ++++HV PHN+ AILRS A + S + Sbjct: 16 NQRMSDLTVLVEHVEKPHNLSAILRSCDAVGVLEAHAVSFSGRPRTFNSTAQGSQRWVSL 75 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + K S+ L D++ + + A +LGAE GL + Sbjct: 76 RDHADISTAVHHLKERSFRLYGTNLGVDARDYRDCD-FTGPCAFVLGAEKWGLTEEATAL 134 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A A LY Sbjct: 135 MDQAIFIPMRGMVQSLNVSVATATLLYEALRQR 167 >gi|110643892|ref|YP_671622.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 536] gi|170681825|ref|YP_001745951.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SMS-3-5] gi|191170337|ref|ZP_03031890.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli F11] gi|218707285|ref|YP_002414804.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UMN026] gi|293407274|ref|ZP_06651198.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli FVEC1412] gi|298383020|ref|ZP_06992615.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1302] gi|331665276|ref|ZP_08366177.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA143] gi|331685313|ref|ZP_08385899.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H299] gi|110345484|gb|ABG71721.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 536] gi|170519543|gb|ACB17721.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SMS-3-5] gi|190909145|gb|EDV68731.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli F11] gi|218434382|emb|CAR15308.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli UMN026] gi|284923713|emb|CBG36810.1| tRNA (guanosine-2'-O)-methyltransferase [Escherichia coli 042] gi|291426085|gb|EFE99119.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli FVEC1412] gi|298276856|gb|EFI18374.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1302] gi|331057786|gb|EGI29772.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA143] gi|331077684|gb|EGI48896.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H299] Length = 229 Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T + A R L + ++ V+ PHN+ AI+R+A A + Sbjct: 1 MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + +A + SD+ + +++G Sbjct: 60 MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 120 QEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|313157844|gb|EFR57254.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5] Length = 227 Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 55/153 (35%), Gaps = 3/153 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R + ++ +++ N A++R AF + T + E + + Sbjct: 37 MRTRYMTVLAENMYHGQNAAALIRHCEAFGVQEMHTVETLCRFEPNPDIVRGTDQWVDVR 96 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + A + + + P ++ AL+ G E G+ + A Sbjct: 97 RHPSTGEALAALRSAGYRIVATTPHREDVTPETFDVAAGPFALVFGTEHAGISDEVIAGA 156 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY---ITQN 278 + M G++++LNVS +AA+ +Y Sbjct: 157 DEFLRIPMCGMVESLNVSASAAILIYMLSERMR 189 >gi|218702420|ref|YP_002410049.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IAI39] gi|218372406|emb|CAR20280.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli IAI39] Length = 229 Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T + A R L + ++ V+ PHN+ AI+R+A A + Sbjct: 1 MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + +A + SD+ + +++G Sbjct: 60 MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 120 QEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|317967917|ref|ZP_07969307.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0205] Length = 238 Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 1/155 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R L +V++ V+ PHN+ AILR+ A + S + Sbjct: 23 NHRMGDLTVVMEQVDKPHNLSAILRTCDAVGALEAHVVSLPGRPRTFNNTAKGSQKWVPL 82 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 K + LS D+ + + ++GAE G+ + Sbjct: 83 HPHPSIEGCLQGLKDKGFRIYGTHLSVDAVDYRDCD-FTGPSCFLMGAEKWGMSEEALAL 141 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G++++LNVS AAA L+ + Sbjct: 142 VDQPLFIPMTGMVQSLNVSVAAATLLFEALRQRQR 176 >gi|293192348|ref|ZP_06609459.1| putative 23S rRNA methyltransferase [Actinomyces odontolyticus F0309] gi|292820263|gb|EFF79257.1| putative 23S rRNA methyltransferase [Actinomyces odontolyticus F0309] Length = 246 Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 89/240 (37%), Gaps = 14/240 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107 + G V + + + ++A ++ V V + + G Sbjct: 2 LVEGPQAVRELAAHRPDAVRDVYVREDAWETHADVVDVARRATRWVHPVTAEVSAALSGD 61 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 A+ + LS L + ++VL DP N+G I+R+A AF G++ Sbjct: 62 --SQGICAVASLDALSRELPEPSVGETIVVLAQGRDPGNVGTIIRTADAFGAVGVVAVAG 119 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF----------QTIGLSSDSK 217 + S + +S++G++ HIP + + DA +H + Sbjct: 120 TVDAASPKVVRSSAGSVFHIPVCVVPSFADARALIHGRSAALLGTSGGAASISLSDLLVQ 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + A + G E +GL + + M G ++LNV++AAA L+ +Q Sbjct: 180 GVSARSRLSQSHAWVFGNEARGLSGDEMRLCDGLVSIPMTGDAESLNVASAAATCLFASQ 239 >gi|332262651|ref|XP_003280373.1| PREDICTED: RNA methyltransferase-like protein 1 [Nomascus leucogenys] Length = 420 Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 44/317 (13%), Positives = 89/317 (28%), Gaps = 56/317 (17%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 Y K R + + + + + L G ++ AL + + Sbjct: 92 LRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLITDALKAGAVAKTFFFSRLEY 151 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQ 133 L L N + V + I + + P + P + Sbjct: 152 LKELP--VNKLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQHSLP 209 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P I Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRVPIINNL 269 Query: 194 NLT---------------DALQKMHSWGFQTIGLSSDSKKPLEQEIKND----------- 227 D + + Sbjct: 270 EWETVPSYLPPDTRVYVADNCGFYAQAQMSNKASDHGWVCDQQVLKFHKYEEEEDVETGA 329 Query: 228 --------------------KIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKAL 263 A+++G E G+ ++ + A + + + +L Sbjct: 330 SQDWLPDVEVQSYCSDWTAAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSL 389 Query: 264 NVSNAAAVALYITQNHF 280 N + AA++ L+ + Sbjct: 390 NSAMAASILLFEGKRQL 406 >gi|300870064|ref|YP_003784935.1| RNA methyltransferase TrmH family group 3 [Brachyspira pilosicoli 95/1000] gi|300687763|gb|ADK30434.1| RNA methyltransferase TrmH family group 3 [Brachyspira pilosicoli 95/1000] Length = 237 Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 6/231 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE- 108 F+ + + AL+ + + + + +K V + ++ IVGK Sbjct: 2 FISSKNAIVEALSKDLVDVIYIKFPISKREKEIIKLAERKKVLIKNVDKREMESIVGKVY 61 Query: 109 ----AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 +V + + L L+ L+ +LD + D HN+GAI+R+A F GII Sbjct: 62 SIAASVKENAEIGIDVFLDRALEKTSTP-LIFILDSITDVHNLGAIIRNAYFFDLGGIII 120 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 K + + + + ++GA H+P +NL ++ M GF S LE Sbjct: 121 PKDNAAPINEKVYEISAGAAYHLPISIETNLNRVIEIMKDKGFWVYYASEKGDTSLENFK 180 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + A+ILG E G+R ++ + + +LNVS A+A+ Y Sbjct: 181 FDTPTAIILGNEHSGVRDSLKKNSDGSIIIRAQSDFDSLNVSAASAIISYA 231 >gi|70993278|ref|XP_751486.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus Af293] gi|66849120|gb|EAL89448.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus Af293] gi|159125580|gb|EDP50697.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus A1163] Length = 484 Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 67/364 (18%), Positives = 120/364 (32%), Gaps = 94/364 (25%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ----------------------- 45 K ++ AK + HR + +Q ++ R + Sbjct: 105 EPKRPRIQTHERAKTIKEHRKERDLQDRSRLKRGEIRFTEGEPEQQKKHVLVPDSVPYTT 164 Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL------DWDANLPHPFPVK--TVP 97 P + F+YG V AAL + R++++L + L L VK Sbjct: 165 PASEFIYGTSAVEAALRSGRRQLYKLYIYQGDNEELGPTRSMLRKLALSKNIKVKMAYAG 224 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLS---------------------------------- 123 + + H G L+ +PL Sbjct: 225 WDRLFDQMSSGRPHNGCILDASPLPQLPVKSLCATPTLGADEFRVVLAPQSKEEAMVNST 284 Query: 124 ------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 L ++++LD + D N+G I+RSA D I+ R S + Sbjct: 285 NNRVPVRHLPGQSRYPVVLLLDGITDTGNLGGIIRSAYYLGIDAIVFAGRNCAPLSPITI 344 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---------- 227 K+++GA E++P I++SN D +Q+ + G++ + + D Sbjct: 345 KASAGAAENMPLIKVSNEVDFIQQSKANGWRFFAADAPLPGTRYPDTTGDIDLTRNAVTQ 404 Query: 228 -KIALILGAEGKGLRPKTQETATSMAHLHMPGI------------IKALNVSNAAAVALY 274 ++LG+EG GL + A S+ + + +LNVS AAA+ + Sbjct: 405 APSVIMLGSEGSGLSGHIKSHADSIVSIPGARNATEWGYEKDPARVDSLNVSVAAAILME 464 Query: 275 ITQN 278 Sbjct: 465 QFLR 468 >gi|161505720|ref|YP_001572832.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867067|gb|ABX23690.1| hypothetical protein SARI_03896 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 218 Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 5 RQPDLTICMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASAAAGSNSWVQVK 63 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + SD + +++G E G+ + + A Sbjct: 64 THRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALDLAD 123 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 124 RDIIIPMIGMVQSLNVSVASALILYEAQRQR 154 >gi|323494590|ref|ZP_08099694.1| tRNA guanosine-2'-O-methyltransferase [Vibrio brasiliensis LMG 20546] gi|323311193|gb|EGA64353.1| tRNA guanosine-2'-O-methyltransferase [Vibrio brasiliensis LMG 20546] Length = 227 Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 2/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A I + + SA Sbjct: 16 RQADLTLCLEEVHKPNNVSAVIRTADATGIHKIHAV--WPNEMRTLSHTSAGARNWVDVE 73 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S + + SD+ + A+ILG+E G K ++ A Sbjct: 74 THDSIEEAITELKSQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASEKAKQLAD 133 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+AV LY Q Sbjct: 134 QDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164 >gi|297518058|ref|ZP_06936444.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli OP50] Length = 174 Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +++G E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 55 YTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 110 >gi|311268037|ref|XP_003131858.1| PREDICTED: RNA methyltransferase-like protein 1-like [Sus scrofa] Length = 422 Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 42/318 (13%), Positives = 96/318 (30%), Gaps = 61/318 (19%) Query: 22 KLRRNHRDYKKMQSF---NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 + + K++ S + + + L G ++ AL + + + Sbjct: 93 RYDKAFPGDKRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKIFFFSRLEYI 152 Query: 79 ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQL 134 L + + V + I + + P + P L Sbjct: 153 KELPIE--KLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHAKMTYPETQLRHTLPL 210 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P I + Sbjct: 211 LLICDNLRDPGNLGTILRSAAGAGCSRVLLTKGCVDAWEPKVLRAGMGAHFQVPIINNLD 270 Query: 195 LTDALQKMHSWGFQTI-------------------------------------------- 210 + + + + Sbjct: 271 WETVPKYLPTDTRVYVADNCGLYAQAQARASTKASDYGWVCDRRAKLHQYEEEGEDVESG 330 Query: 211 ----GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKA 262 L + + + A+++G E G+ ++ + A S + + + + Sbjct: 331 ASKGWLPELQVQTYDADWTEAPAAVVIGGETHGVSLESLQLAESTGGGRLLIPVVPGVDS 390 Query: 263 LNVSNAAAVALYITQNHF 280 LN + AA++ L+ + Sbjct: 391 LNSAMAASILLFEGKRQL 408 >gi|258648108|ref|ZP_05735577.1| RNA methyltransferase, TrmH family [Prevotella tannerae ATCC 51259] gi|260851979|gb|EEX71848.1| RNA methyltransferase, TrmH family [Prevotella tannerae ATCC 51259] Length = 249 Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 83/257 (32%), Gaps = 17/257 (6%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K + + R G V L LLAT + L Sbjct: 4 RAEIKWLHGL-TRKRQRDAEGLFIAEGPKVVGDLLA--LFPCRLLLATADFLQSKAQWPA 60 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 V+ + + ++ +A Q + + +L + LD + DP N Sbjct: 61 A----EVRELSASELVRVSLLQAPQQVV---AVFEKPTPVPWQPTDELALALDGLQDPGN 113 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G I+R A F I+ + + + + + ++ GAL I + + Sbjct: 114 VGTIIRLADWFGIHNILCSPTTADAFAPKVVQATMGALGRINLHYVDLCEALAKLPVETP 173 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKA 262 L + + K +I+G EG+G+ P + + + ++ Sbjct: 174 IYGTFLDGPNIYEQS---LDTKGLIIMGNEGQGISPAVERFVSKRLFIPRFPLNATGSES 230 Query: 263 LNVSNAAAVALYITQNH 279 LNV+ A A+ + Sbjct: 231 LNVAMATAIVCAEFRRR 247 >gi|152972505|ref|YP_001337651.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238897101|ref|YP_002921847.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|262045611|ref|ZP_06018630.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329996955|ref|ZP_08302652.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3] gi|150957354|gb|ABR79384.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549429|dbj|BAH65780.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259037037|gb|EEW38289.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328539245|gb|EGF65274.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3] Length = 229 Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ A++R+A A + S + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEV-HAVWPSSRMRTMASAAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + SD + +++G E G+ + Sbjct: 69 SWVQVKTHRTIADAVGHLKGQGMQILATHLSDKAIDFREIDYTRPTCILMGQEKTGITQE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|256421016|ref|YP_003121669.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588] gi|256035924|gb|ACU59468.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588] Length = 197 Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 1/147 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAF-SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL++V DPHNI A+LR+ A D + + + S+S A + Sbjct: 20 LTVVLENVFDPHNISAVLRTCDAVGIQDVYVLNTTTARRKRWGHKSSSSAAKWLTVHQFS 79 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 T + + K L + +AL+ G E +G+ + ++ Sbjct: 80 DTATCMAVVREKYDKIYTTHLAADAKSLYELDFTGSVALVFGNEQEGVSEEIRKLCDGNF 139 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + GIIK+LN+S A AV++Y Sbjct: 140 IIPQVGIIKSLNISVACAVSIYEAMRQ 166 >gi|297486581|ref|XP_002695756.1| PREDICTED: RNA methyltransferase like 1 [Bos taurus] gi|296476912|gb|DAA19027.1| RNA methyltransferase like 1 [Bos taurus] Length = 413 Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 44/335 (13%), Positives = 105/335 (31%), Gaps = 57/335 (17%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSF---NQKSRHTSQPENLFLYGVHTVS 58 I S+ + ++S + + K++ S + + + L G ++ Sbjct: 74 QQIQGPASQTPSTWEES-GLRYDKAFPGDKRLSSVMTIVKSRPFREKQGKILLEGRRLIA 132 Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 AL + + + L + VK + +V + + A Sbjct: 133 DALKAGAVPQIFFFSRLEYIKELPIEKLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKP 192 Query: 118 TAPLLSPTLDAVRNSQLL-MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 ++ +R++ + ++ D++ DP N+G ILRSA C ++ TK + + Sbjct: 193 DHVKMTYPETQLRHTLPISLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKV 252 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQT--------------------------- 209 ++ GA +P I + + + Sbjct: 253 LRAGMGAHFQVPIINNLDWEAVPDHLPTDTRVYVADNCGLYVQAQAQRSNKASDYGWVRD 312 Query: 210 --------------------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 L + + + A+++G E G+ ++ + A Sbjct: 313 QRPLKFHEYEEEDLESGASQCWLPELEVQSYDSDWTEAPAAVVIGGETHGVSLESLQLAE 372 Query: 250 S----MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 S + + + +LN + AA++ L+ + Sbjct: 373 STGGGRLLIPVVPGVDSLNSAMAASILLFEGKRQL 407 >gi|76643639|ref|XP_582975.2| PREDICTED: RNA methyltransferase like 1 [Bos taurus] Length = 449 Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 44/335 (13%), Positives = 105/335 (31%), Gaps = 57/335 (17%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSF---NQKSRHTSQPENLFLYGVHTVS 58 I S+ + ++S + + K++ S + + + L G ++ Sbjct: 74 QQIQGPASQTPSTWEES-GLRYDKAFPGDKRLSSVMTIVKSRPFREKQGKILLEGRRLIA 132 Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 AL + + + L + VK + +V + + A Sbjct: 133 DALKAGAVPQIFFFSRLEYIKELPIEKLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKP 192 Query: 118 TAPLLSPTLDAVRNSQLL-MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 ++ +R++ + ++ D++ DP N+G ILRSA C ++ TK + + Sbjct: 193 DHVKMTYPETQLRHTLPISLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKV 252 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQT--------------------------- 209 ++ GA +P I + + + Sbjct: 253 LRAGMGAHFQVPIINNLDWEAVPDHLPTDTRVYVADNCGLYVQAQAQRSNKASDYGWVRD 312 Query: 210 --------------------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 L + + + A+++G E G+ ++ + A Sbjct: 313 QRPLKFHEYEEEDLESGASQCWLPELEVQSYDSDWTEAPAAVVIGGETHGVSLESLQLAE 372 Query: 250 S----MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 S + + + +LN + AA++ L+ + Sbjct: 373 STGGGRLLIPVVPGVDSLNSAMAASILLFEGKRQL 407 >gi|157149268|ref|YP_001456587.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter koseri ATCC BAA-895] gi|157086473|gb|ABV16151.1| hypothetical protein CKO_05108 [Citrobacter koseri ATCC BAA-895] Length = 229 Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ AI+R+A A I + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEI-HAVWPGSRMRTMASAAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + SD + +++G E G+ + Sbjct: 69 SWVQVKTHRTIGDAVSHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALDLADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|262392639|ref|YP_003284493.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio sp. Ex25] gi|262336233|gb|ACY50028.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio sp. Ex25] Length = 227 Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 2/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A + + + SA Sbjct: 16 RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVHAI--WPDKMRTLSHTSAGARNWVEVD 73 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S T + + SD+ + A+ILG+E G + ++ A Sbjct: 74 THDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASDQAKQLAD 133 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+AV LY Q Sbjct: 134 QDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164 >gi|309804548|ref|ZP_07698613.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus iners LactinV 09V1-c] gi|309808492|ref|ZP_07702391.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus iners LactinV 01V1-a] gi|308165940|gb|EFO68158.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus iners LactinV 09V1-c] gi|308168320|gb|EFO70439.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus iners LactinV 01V1-a] Length = 180 Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 45/151 (29%), Positives = 81/151 (53%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + L++LD + DPHN+G+ILR+A A DGII +R + ++V+AK+++GA++++P Sbjct: 21 KADPFLLMLDSIEDPHNLGSILRTADATGVDGIIIPQRRASGLTSVVAKTSTGAIDYVPV 80 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +R++NL + + G+ G + + K L++G EGKG+ P + Sbjct: 81 VRVNNLVQTVDTLKDKGYWFFGTAMSGDNYTNWD-ARGKCVLVIGNEGKGISPLLLKQMD 139 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G +++LN A + LY N Sbjct: 140 QTLTIPMTGHVQSLNAGVATGILLYQMFNSR 170 >gi|190575636|ref|YP_001973481.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] gi|190013558|emb|CAQ47193.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] Length = 277 Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 55/272 (20%), Positives = 105/272 (38%), Gaps = 8/272 (2%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 K++ R + + L LYG + V A + + +L Sbjct: 5 WKNARRPSSRPPRATPLPPREGGTPPPPGRGNDELRLYGWNAVQALFAKRPQALRKLYLV 64 Query: 75 KNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEA----VHQGLALETAPLLSPTLDA 128 + R+ + + + V ++K+ V L PL D Sbjct: 65 DALIPRMQPVLKWCVANRVGYRVVEEGDLNKLAATTHHEGLVADVLRAPVVPLAQWLADL 124 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + L + LD V +PHN GAILRSA F ++ + + S A+ A G E +P Sbjct: 125 EQGPVLALWLDGVGNPHNFGAILRSAAHFGVKALLLPAGSTLALSGAAARVAEGGAESVP 184 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +++ A+ ++ S GF + + + +++ ++GAEG+G+ Sbjct: 185 LVQLPETAQAMAQLRSAGFGLAATLVEGGDDVFRASLPERLVYVMGAEGEGMDRGLAGQC 244 Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278 + G +++LNV++A AV L + ++ Sbjct: 245 DLQVSIPGSGAVESLNVASATAVLLAQWASRR 276 >gi|26380829|dbj|BAC25446.1| unnamed protein product [Mus musculus] gi|127799761|gb|AAH90975.2| RNA methyltransferase like 1 [Mus musculus] Length = 311 Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 85/293 (29%), Gaps = 50/293 (17%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-HPFPVKTV 96 + + + L G ++ AL + + + L D VK Sbjct: 5 KSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEYVKELPVDKLKDVSLIKVKFE 64 Query: 97 PPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + +V + + + + P L+++ D++ DP N+G ILRSA Sbjct: 65 DIKDWSDLVTPQGIMGIFAKPDPVKMTYPETPLHHTLPLVLICDNLRDPGNLGTILRSAA 124 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALE---------------HIPYIRISNLTDALQ 200 C ++ TK + + ++ GA H+P + D Sbjct: 125 GAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNNVEWETVPNHLPPDTRVYVADNCG 184 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKND-----------------------------KIAL 231 D + A+ Sbjct: 185 HYAQVQMSDKTGDRDWACDRRFLKFHKYEEDLDTKTRKDWLPKLEVQSYDLDWTGAPAAV 244 Query: 232 ILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++G E G+ ++ + A + + + +LN + AA++ L+ + Sbjct: 245 VIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQL 297 >gi|257146503|emb|CAX30790.1| tRNA (Guanosine-2'-O-)-methyltransferase [SBR proteobacterium] Length = 239 Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R L + L++V+ PHNI A++R+A A I S ++ A +A Sbjct: 15 MRQPDLTVCLENVHKPHNISAVIRTADAVGIPQI-HAIWCKNSSKSLSAAAAGSNHWVKI 73 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + ++ Q +ILG E + + A Sbjct: 74 KTHATIENAISTCKAVGMQILAAYLNNQAIDFRQIDYTQPTCIILGQERASISKQALALA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 H+ M G++++LNVS A+A+ LY Q Sbjct: 134 DHNIHIPMMGMVQSLNVSVASALILYEAQRQR 165 >gi|30250229|ref|NP_842299.1| rRNA methyltransferase [Nitrosomonas europaea ATCC 19718] gi|30181024|emb|CAD86214.1| rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2 [Nitrosomonas europaea ATCC 19718] Length = 154 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L ++L P N G I+R + R + + +G H Sbjct: 1 MLQIILHQPEIPPNTGNIIRLCANTGAQLHLI--RPLGFDLSDRQLRRAGLDYHEWARLT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + A G + +++ + + + G+E +GL + E Sbjct: 59 VHEDLASCLKLMDGCRIFAVTTRATHHHGKVAYTGNDVFLFGSETRGLPAEVLENFPQDQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNAAAV +Y Sbjct: 119 RIRIPMLSASRSLNLSNAAAVIIYEAWRQI 148 >gi|57168674|ref|ZP_00367806.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter coli RM2228] gi|305432697|ref|ZP_07401857.1| RNA methyltransferase [Campylobacter coli JV20] gi|57019955|gb|EAL56635.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter coli RM2228] gi|304444206|gb|EFM36859.1| RNA methyltransferase [Campylobacter coli JV20] Length = 227 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG L I +L K + + F +K + +T + K Sbjct: 2 IVYGKQIFFYILERHKELINELYLAKECD-KETFKKIASSGFKIKKLDFKT-AQAYAKGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG L+ L ++ + + +L ++D NIGAI+R+A A DG+I Sbjct: 60 NHQGFLLDIKEYEFKDLHTLKKGEFIAILYGISDVGNIGAIVRTAYALGVDGLIFIGERL 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 E + +++SGA + +++ L ++ GF+ +S K+ ++ K Sbjct: 120 AME--GVIRTSSGAALDLEIALNNDIFTVLNELKQVGFKLFASASGGKQIHHYKVDKGKK 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ALILG+EG GL K + + M +LNVS A A+ Sbjct: 178 ALILGSEGLGLSAKIIKKCDECVGIEMKNNFDSLNVSVAFAILC 221 >gi|227113296|ref|ZP_03826952.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 230 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R L + ++ V+ PHN+ A++R+A A + + +++ +A Sbjct: 14 NCRQPDLTICMEQVHKPHNVSAVIRTADAVGVHEV-HAIWPTSRMKTLVSSAAGSNSWVQ 72 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + S+ + ++LG E G+ + + Sbjct: 73 VKTHRNIGDAVGHLKAEGMQVLATHLSEHAVDFREIDYTRPTCILLGQEKTGITAEALKL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQR 165 >gi|197124691|ref|YP_002136642.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K] gi|196174540|gb|ACG75513.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K] Length = 225 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 55/152 (36%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L +V++ DP N+ A+LR+ AF + + S + Sbjct: 23 NRTRTLTVVMEAFCDPQNVNAVLRTCEAFGVQTLHAIEGPMKPYDRNKKISQNADKWLDV 82 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 S + +P+ K+AL+ G E +G+ + A Sbjct: 83 RRWSSTTECLAHLRAEGFAVYATHLGERSRPMAGLSFAGKVALVFGNEQRGVSEEALALA 142 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G +++LNVS AAA++L Sbjct: 143 DACYAIPMRGFVQSLNVSVAAAISLAHAVERR 174 >gi|119510692|ref|ZP_01629820.1| hypothetical protein N9414_22008 [Nodularia spumigena CCY9414] gi|119464646|gb|EAW45555.1| hypothetical protein N9414_22008 [Nodularia spumigena CCY9414] Length = 153 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 1/146 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL + P N G I R+ A + + L ++ ++ +L Sbjct: 4 VVLVYPQIPPNTGNIARTCAATGTELHLVAPLGFEISDRYLKRAGLDYWPYVKLHYHESL 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 G + +G + L+ G+E GL + ++ Sbjct: 64 EAFQATHQERGGRCLGFTVRGNFNYASFQFQADDWLLFGSETTGLPSTILSDCDATLYIP 123 Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280 M +++LN+S + AV+L+ + Sbjct: 124 MAEPHVRSLNLSVSVAVSLFEARRQL 149 >gi|121708633|ref|XP_001272196.1| RNA methyltransferase, TrmH family family [Aspergillus clavatus NRRL 1] gi|119400344|gb|EAW10770.1| RNA methyltransferase, TrmH family family [Aspergillus clavatus NRRL 1] Length = 495 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 69/365 (18%), Positives = 116/365 (31%), Gaps = 92/365 (25%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL----------- 49 M + K K A + K+ K E + Sbjct: 112 MKFVPDPKMPKSTWPGSKVEASKEEDPPKMKRAGRMKLKRGVHRFTETMPEFLKHHIKVP 171 Query: 50 -----------FLYGVHTVSAALNNPSRKIFQLLATKNALARL------DWDANLPHPFP 92 FLYG V AAL R++++L + L L Sbjct: 172 DFISHATPASQFLYGTSAVEAALRCGRRQMYRLYIYQGDTDELGSNRSKLRKLALSKNIK 231 Query: 93 VK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----------------------- 127 VK + + H G L+ +PL + Sbjct: 232 VKMAYAGWDRLFDQMSSGRPHNGCILDASPLPVLPIKSLCAVPSLDVNEFRVTLAAQSRE 291 Query: 128 -----------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 R ++++LD + D N+G I+RSA D I+ R Sbjct: 292 EALVNSTNDRIEIRHPPNRRRYPVIILLDGIVDKGNLGGIIRSAYYLGIDAIVFAGRNCA 351 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--- 227 S V K+++GA E++P ++++N D +Q+ + G+Q + + + Sbjct: 352 PLSPVTIKASAGAAENMPMLKVTNEVDFIQQSKANGWQFYAADAPVLGATYLDNFDMAMT 411 Query: 228 -------KIALILGAEGKGLRPKTQETATSMAHLHM------------PGIIKALNVSNA 268 L+LG+EG GL P + A S+ + P + +LNVS A Sbjct: 412 RNPLTQAPSVLMLGSEGFGLSPHIKSQADSIVSIPGARAPTEWGTDSDPARVDSLNVSVA 471 Query: 269 AAVAL 273 AA+ + Sbjct: 472 AAILM 476 >gi|119773403|ref|YP_926143.1| tRNA guanosine-2'-O-methyltransferase [Shewanella amazonensis SB2B] gi|119765903|gb|ABL98473.1| tRNA guanosine-2'-O-methyltransferase [Shewanella amazonensis SB2B] Length = 241 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L ++LD V+ +NI A+LRSA A + + ++ Sbjct: 15 NRQPDLTVLLDQVHKTNNIAAVLRSADAVGVHQL-HAVWPESAMRVSGNTASGSQQWVKT 73 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + S + K + A++LG E G+ + A Sbjct: 74 LRHQTVTDAITALKADGMQVVVTNFSPNAKDFREIDYTKPTAIVLGHEKNGVSDEAVRLA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G++++LNVS A A+ L+ + Sbjct: 134 DAEVIIPMVGMVQSLNVSVAGALVLFEAERQR 165 >gi|302762835|ref|XP_002964839.1| hypothetical protein SELMODRAFT_167231 [Selaginella moellendorffii] gi|300167072|gb|EFJ33677.1| hypothetical protein SELMODRAFT_167231 [Selaginella moellendorffii] Length = 321 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 47/295 (15%), Positives = 97/295 (32%), Gaps = 41/295 (13%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN-------NPSRKIFQL 71 H + L + K + + S + E++ + G + + ++ L Sbjct: 30 HVSSLS--NPYVKHLVKMRESSSYREATESVLVVGSNLLQELCEFAVTNNTEAPFELEML 87 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-------- 123 L + + + + K+ G ++ A+ L S Sbjct: 88 LVVEERDFPQELSTFSQRTV---FLTASVMQKLAGLKSSESVDAIGVVKLPSSFQKLSPD 144 Query: 124 --------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 N L++LD + DP N+G +LR+A AF+ DG+ + Sbjct: 145 ESLASAGATLEKWCPNPHRLLILDGIQDPGNLGTLLRTATAFAWDGVFLLPGCCDPFNDK 204 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK------- 228 +++ A +P + + G+ KN Sbjct: 205 TLRASRAANFRMPIAAGTWPQIQAFGKANAMKFYAGIPEQVHSSRLHSKKNSPEALIEKI 264 Query: 229 -----IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L+LG+EG+GL + + + MPG ++LNV+ + +++ N Sbjct: 265 KSEKSLCLVLGSEGQGLSDPARRGS-QHLTVPMPGKFESLNVAVVGGILMFLLMN 318 >gi|327389138|gb|EGE87484.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA04375] Length = 212 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 85/219 (38%), Gaps = 10/219 (4%) Query: 58 SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 A+ I ++ +N +L + V + + + QG+ Sbjct: 3 EEAVQAGVT-IEKIFTLENYRDQLATFSQT------VWVSEDILLDLADSQ-TPQGIVAV 54 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 D + L + + V DP N+G I+R+A A G+I + + + S Sbjct: 55 VQKEEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTL 112 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S G+ H+P R+++ + S + + L++G EG Sbjct: 113 RSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEG 172 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 173 QGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 211 >gi|124025191|ref|YP_001014307.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. NATL1A] gi|123960259|gb|ABM75042.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. NATL1A] Length = 229 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 1/147 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +++++V PHN+ AI+RS A + S I +++ Sbjct: 22 LTVLIENVEKPHNLSAIIRSCDAVGVLEAYAIFNKEKFLTFNSTAQGSQKWVKINQYKMT 81 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + K + L+ S + A +LGAE G+ + H Sbjct: 82 TEAIKVLKEKGFKLYGTNLNPRSIDYRKCN-FKGPTAFVLGAEKWGISEEASSLMDEHIH 140 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS AA+ L+ Sbjct: 141 IPMRGMVESLNVSVAASALLFEAIRQR 167 >gi|168043421|ref|XP_001774183.1| predicted protein [Physcomitrella patens subsp. patens] gi|162674451|gb|EDQ60959.1| predicted protein [Physcomitrella patens subsp. patens] Length = 280 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 68/247 (27%), Positives = 109/247 (44%), Gaps = 23/247 (9%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKN-----------ALARLDWDANLPHPF--PVKTVP 97 +YGV + AA R L N ++W N H V+TV Sbjct: 21 VYGVAPIRAAFLAERRIFHTLYVQTNLVDNIATGKRKDKQAVNWILNRAHNLEMKVETVS 80 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-------LMVLDHVNDPHNIGAI 150 Q ++ +V HQGL L+ +PL + + + + LD V DP N GAI Sbjct: 81 KQHLNLLVD-NRPHQGLVLDASPLELVPCEYLERPSIQDGRSPVWVALDEVIDPQNFGAI 139 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LRS G++ + S S V++K+++GALE + N+ L G++ + Sbjct: 140 LRSCHYLGATGVVVCAKNSAPLSGVVSKASAGALEVMEIQSCRNMMKFLDTSVQNGWRAV 199 Query: 211 GLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 G SS+ + QE++ L+LG EG+GLR + + T + + + +LNVS AA Sbjct: 200 GASSEPRALPIQELEPGLPTILVLGNEGRGLRTNVKRSCTELVSIK-ADAVDSLNVSVAA 258 Query: 270 AVALYIT 276 + L+ Sbjct: 259 GILLHDL 265 >gi|75909401|ref|YP_323697.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413] gi|75703126|gb|ABA22802.1| RNA methyltransferase TrmH, group 2 [Anabaena variabilis ATCC 29413] Length = 153 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 1/146 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL + P N G I R+ A + + L ++ ++ + Sbjct: 4 VVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYHKTI 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 G + +G S Q L+ G+E GL P + ++ Sbjct: 64 EAFENVHQERGGRLLGFSVSGSSSYIQFPYQADDWLLFGSETTGLPPTVLSACDATLYIP 123 Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280 M +++LN+S + AV L+ + Sbjct: 124 MAEPGVRSLNLSVSVAVGLFEVRRQL 149 >gi|323965917|gb|EGB61365.1| SpoU rRNA methylase [Escherichia coli M863] gi|327250779|gb|EGE62481.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli STEC_7v] Length = 229 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASAAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + SD+ + +++G E G+ + Sbjct: 69 SWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|161761287|ref|YP_156756.2| tRNA guanosine-2'-O-methyltransferase [Idiomarina loihiensis L2TR] Length = 226 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 1/153 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +V+++V+ HN+ A++RSA A + + + + Sbjct: 16 RQPDLTVVMENVHKNHNLSAVVRSADAIGVHEM-HAIWLTKKARLSGGTALGSQNWVKIH 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + S+ + A++LG E G+ + + A Sbjct: 75 NHKTVGEALEATQGRGMQVVVTHLSEHSVDFREVDYTKPTAILLGQEKYGVTDEALDIAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G++++LNVS A AV LY Q + Sbjct: 135 YHVMIPMVGMVQSLNVSVAGAVMLYEAQRQREQ 167 >gi|253690572|ref|YP_003019762.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757150|gb|ACT15226.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 230 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R L + ++ V+ PHNI A++R+A A + + +++ +A Sbjct: 14 NCRQPDLTICMEQVHKPHNISAVIRTADAVGVHQV-HAIWPTSRMKTLVSSAAGSNSWVQ 72 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + S+ + ++LG E G+ + + Sbjct: 73 VKTHRNIGDAVGHLKAEGMQVLATNLSEHAVDFREIDYTRPTCILLGQEKTGITAEALKL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQR 165 >gi|327538381|gb|EGF25053.1| rRNA methylase [Rhodopirellula baltica WH47] Length = 302 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 93/250 (37%), Gaps = 11/250 (4%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 + RH + G V L++ + +L ++ P PV + Sbjct: 50 RNLRHRETDDGFIAEGSLVVGRLLHSGLG-VQSVLIHTGRESKYLPLI--PDSVPVYLID 106 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSA 154 + ++ G + H+G+ L+ R+S L + L ++DP N+G++LRSA Sbjct: 107 RELGKELAGYD-FHRGVLAHGFSPTIEPLEKFRDSPQSSLALALMGLSDPENVGSLLRSA 165 Query: 155 VAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 A I+ T + V S + + L D + + Sbjct: 166 AALGVRDILLGPQTISPMTRRVIRVSMASVFRHRFYRFDNPVGQLRDLANAGIASIATLL 225 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++ L I++ + L++G E GL P+ E AT + L M +LNV A+A Sbjct: 226 DDTAIPLIDLSSAIQSKRRILMVGNEANGLPPEIAEAATHRSTLPMRNDTDSLNVGVASA 285 Query: 271 VALYITQNHF 280 + LY Sbjct: 286 IFLYELTRLR 295 >gi|255075481|ref|XP_002501415.1| predicted protein [Micromonas sp. RCC299] gi|226516679|gb|ACO62673.1| predicted protein [Micromonas sp. RCC299] Length = 338 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 100/273 (36%), Gaps = 23/273 (8%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 ++ K + + + ++ + G + +A+ Sbjct: 74 EERITSTDNATVKHFAKLVRNRGYREECGSIVVAG---------SGILSEVCGGGGGDAV 124 Query: 79 AR-----LDWDANLPHPF---PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP----TL 126 L DA +P + P + K G ++V + A+ + L Sbjct: 125 GSARVLFLADDACVPAGVTASRIVRAPEHVLKKAAGLQSVDRVDAVAELSMPPVVGVAAL 184 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + L+ LD + DP N+G ++R+A+A D + + ++A G + Sbjct: 185 EGAGRITRLLALDGIQDPGNLGTLVRTALALGWDAVALLPGTCDPYNDKALRAARGGVFR 244 Query: 187 IPYIRISNLT-DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +P R++ + + + ++D+ + + L+LG+EG+GL Sbjct: 245 MPMARLTWEELEEVTRRDGLQRFCAEPTADATAADTAATGSKGLCLVLGSEGQGLSDVAL 304 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 T + MPG +++LNV+ A + LY+ + Sbjct: 305 RTC-EPVAIPMPGEMESLNVAVAGGILLYLMRR 336 >gi|220919411|ref|YP_002494715.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans 2CP-1] gi|219957265|gb|ACL67649.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans 2CP-1] Length = 225 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 54/152 (35%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L +V++ DP N+ A+LR+ AF + + S + Sbjct: 23 NRTRTLTVVMEAFCDPQNVNAVLRTCEAFGVQTLHAIEGPMKPYDRNKKISQNADKWLDV 82 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 S + P+ K+AL+ G E +G+ + A Sbjct: 83 RRWSSTAECLAHLRSEGFAIYATHLGERSTPMAGLSFAGKVALVFGNEQRGVSEEALALA 142 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G +++LNVS AAA++L Sbjct: 143 DACYAIPMRGFVQSLNVSVAAAISLAHAVERR 174 >gi|269965888|ref|ZP_06179981.1| tRNA methyltransferase [Vibrio alginolyticus 40B] gi|269829441|gb|EEZ83682.1| tRNA methyltransferase [Vibrio alginolyticus 40B] Length = 236 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 2/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A + + + SA Sbjct: 25 RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVHAI--WPDKMRTLSHTSAGARNWVEVD 82 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S T + + SD+ + A+ILG+E G + ++ A Sbjct: 83 THDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTRPTAIILGSEKVGASEQAKQLAD 142 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+AV LY Q Sbjct: 143 QDIIIPMVGMVQSLNVSVASAVILYEAQRQR 173 >gi|149195670|ref|ZP_01872727.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155] gi|149141132|gb|EDM29528.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155] Length = 262 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 84/232 (36%), Gaps = 5/232 (2%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + V+ +++ R + +LAT++ A + K+ G Sbjct: 30 NSFIADSPKVVNLLIDSGIR-VKSILATEDYYAEEQSRLEALQKVDFYVADKTMMKKVTG 88 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 +H G+ + ++ + +++L ++ N+G I RSA A + + Sbjct: 89 Y-NIHHGVMMHAFRPEEYKINQLDEQ--IIMLAELSKNDNVGTIARSAAALGVKSYLVPR 145 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIK 225 + + + G + + +L + + + +S L Sbjct: 146 QGPHPYGRRALRVSMGYISRLKVSVYDDLLNTISELQSLGYQVIAAEASQHAIDLSTLEV 205 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +K L++G EG GL K QE + + M IK+ NV AAA+ +Y Sbjct: 206 PNKWVLLMGHEGLGLSQKVQEACDCVVKIEMDEDIKSFNVGVAAAILMYQMA 257 >gi|56752229|ref|YP_172930.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] gi|81300683|ref|YP_400891.1| RNA methyltransferase TrmH, group 2 [Synechococcus elongatus PCC 7942] gi|56687188|dbj|BAD80410.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] gi|81169564|gb|ABB57904.1| RNA methyltransferase TrmH, group 2 [Synechococcus elongatus PCC 7942] Length = 156 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 1/145 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + L ++ ++ + Sbjct: 4 VVLYQPEIPPNTGNIARTCAATDTPLHLIEPLGFELSDRYLKRAGLDYWPYVQLTTHPDW 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + Q+ G + I ++ + L+ G E GL + + Sbjct: 64 SVFRQQQQQQGGRLIAFTTKGELNYLDCDFQATDWLLFGRETSGLPEDVLASCDHRVRIP 123 Query: 256 MP-GIIKALNVSNAAAVALYITQNH 279 P +++LN+S + A+ L+ + Sbjct: 124 TPQAGVRSLNLSVSVAIGLFEARRQ 148 >gi|163840834|ref|YP_001625239.1| SpoU rRNA methylase family protein [Renibacterium salmoninarum ATCC 33209] gi|162954310|gb|ABY23825.1| SpoU rRNA methylase family protein [Renibacterium salmoninarum ATCC 33209] Length = 278 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 100/270 (37%), Gaps = 22/270 (8%) Query: 1 MNLI---SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTV 57 M++I S E++ +LRR+ ++ + Sbjct: 1 MSMIIQLSSAADERVKDYSKLTDTQLRRS---------------VEAEQGLYIAESSKVL 45 Query: 58 SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 AL + + L L PV +++I G LA Sbjct: 46 RRALATGHQP-RSFFMAEKWLESLADVFEAYPDIPVYCGSDAVLEEITGFHLHRGALAAM 104 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 P + + ++ + VL+ + D N+GAI RSA A D ++ + R + Sbjct: 105 NRPEPIDFVSLLSGARRVAVLEDIVDHTNLGAIFRSAAALEIDAVLISPRCADPLYRRSI 164 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILG 234 + + GA+ +P+ R++ + L K+ S GF T+ L+ + E +++ALILG Sbjct: 165 RVSMGAVFQVPWARLTQWPEDLSKLKSAGFSTVALALEQDSMTLDELATKLPERLALILG 224 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALN 264 EG+G + M G + +LN Sbjct: 225 TEGEGPSAPVLAEVDQTVMIPMSGGVDSLN 254 >gi|254228570|ref|ZP_04921995.1| RNA methyltransferase, TrmH family [Vibrio sp. Ex25] gi|151938952|gb|EDN57785.1| RNA methyltransferase, TrmH family [Vibrio sp. Ex25] Length = 236 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 2/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A + + + SA Sbjct: 25 RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVHAI--WPDKMRTLSHTSAGARNWVEVD 82 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S T + + SD+ + A+ILG+E G + ++ A Sbjct: 83 THDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASDQAKQLAD 142 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+AV LY Q Sbjct: 143 QDIIIPMIGMVQSLNVSVASAVILYEAQRQR 173 >gi|149724758|ref|XP_001502222.1| PREDICTED: similar to RNA methyltransferase-like protein 1 [Equus caballus] Length = 420 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 42/316 (13%), Positives = 96/316 (30%), Gaps = 59/316 (18%) Query: 22 KLRRNHRDYKKMQSF---NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78 + + K++ S + + + L G ++ AL + + + + Sbjct: 93 RYDKALPGDKRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKVFFFSRLDYI 152 Query: 79 ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQL 134 L D + V + I + + P + P + L Sbjct: 153 KELPTD--KLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPETQLRHSLPL 210 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 L++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P I + Sbjct: 211 LLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIINNLD 270 Query: 195 LTDALQKMHSWGFQTI-------------------------------------------- 210 + + + Sbjct: 271 WETVPNYLPTDTRVYVADNCGLYAQAQTSNKASDHGWVCDRQLSKLHKYEEEVDLETGAS 330 Query: 211 --GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALN 264 L + + + A+++G E G+ ++ + A + + + +LN Sbjct: 331 KGWLPELEVQSYDLDWTEAPAAVVIGGETHGVSLESLQLAENTGGKRLVIPVVPGVDSLN 390 Query: 265 VSNAAAVALYITQNHF 280 + AA++ L+ + Sbjct: 391 SAMAASILLFEGKRQL 406 >gi|39938630|ref|NP_950396.1| rRNA methylase [Onion yellows phytoplasma OY-M] gi|39721739|dbj|BAD04229.1| rRNA methylase [Onion yellows phytoplasma OY-M] Length = 234 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 99/251 (39%), Gaps = 22/251 (8%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + + + K Q ++ + +YG H + A N + + + + Sbjct: 4 SKQNPTF-KKLKKLQLKKYRDLYQQFLVYGDHLIEQAQKNNA--VVTIFTSNEEK----- 55 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 P + P + ++ + V + +AL + L ++VLD + D Sbjct: 56 --------PGTFIAPSLMKELSQTKTVFEQMALCKPTSENNLLSDK-----ILVLDDIQD 102 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GA++RSA AF + + + + +S+ GAL + R + + + Sbjct: 103 PANLGALMRSASAFGFNQVFASFHSADFYHEKTIRSSQGALFSLSLKRGNTKSFLEEIKE 162 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + +E K K L+LG EG+G+ +T+ + ++ +++L Sbjct: 163 KNYSIFSAFPQKANITMEDAKKYPKKVLVLGNEGQGISLETEALSDYFVNICTQ-NVESL 221 Query: 264 NVSNAAAVALY 274 NV+ A ++ +Y Sbjct: 222 NVAVAGSILMY 232 >gi|68171778|ref|ZP_00545123.1| RNA methyltransferase TrmH, group 3 [Ehrlichia chaffeensis str. Sapulpa] gi|67998803|gb|EAM85510.1| RNA methyltransferase TrmH, group 3 [Ehrlichia chaffeensis str. Sapulpa] Length = 218 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 4/206 (1%) Query: 73 ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDA 128 N +K V P I+ ++ + HQG+AL+ + + L+ Sbjct: 1 MKNNNEISKILRLCKQKNINLKQVNPNYINSVLPHNSNHQGIALKASVIDSTTVEEVLNT 60 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + S +++LD V D HN+G+I+RSAV F+ D II SPSE+ ++K++SGA++ IP Sbjct: 61 SKESSTIILLDQVTDIHNVGSIIRSAVCFNVDAIILPYHNSPSENCGMSKTSSGAVDMIP 120 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + N+ + ++ + G+ G + + L + + K +I G+E KG+R T+E Sbjct: 121 IVYVINIVNTIKLLKKAGYWCYGFDAKEGEFLHKTKLDSKKLIIFGSEDKGMRKLTKENC 180 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + + + I +LNVSNAAAVALY Sbjct: 181 DFLLKIAISKKIDSLNVSNAAAVALY 206 >gi|317179082|dbj|BAJ56870.1| hypothetical protein HPF30_0773 [Helicobacter pylori F30] Length = 227 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 88/224 (39%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + LN+ K+ ++ +K + + L P + + K Sbjct: 4 VIYGKQVLMRILNSYQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ L V+ +Q L+VL + D NIG I RSA DGII ++ Sbjct: 62 NHQGVLAKVELPLALPLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGII--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + ++ T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223 >gi|325496341|gb|EGC94200.1| putative methyltransferase [Escherichia fergusonii ECD227] Length = 370 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 93/244 (38%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 126 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 185 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 186 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 244 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 245 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 303 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + +K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 304 QGKPLFKTSLPEKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 363 Query: 276 TQNH 279 Sbjct: 364 WWRQ 367 >gi|302335827|ref|YP_003801034.1| tRNA/rRNA methyltransferase (SpoU) [Olsenella uli DSM 7084] gi|301319667|gb|ADK68154.1| tRNA/rRNA methyltransferase (SpoU) [Olsenella uli DSM 7084] Length = 277 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 90/259 (34%), Gaps = 9/259 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NL 87 Y ++ +S + L ++ ++ A+ + + + L RL + Sbjct: 20 YVRLTDRQLRSVLDPNSALVILESLNVITLAVREGVELV-SVFVERRHLERLLAELPSLS 78 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V + ++VG V LA P + + + + VL+ + D N+ Sbjct: 79 ERDIEVFVASRAVMSEVVGFNVVRGYLAAARRPHPREAQEVLEGASRVAVLEGLTDVSNV 138 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA+ RSA A D ++ + + +++ G + +P+ Sbjct: 139 GALFRSAAALGVDALLLAPTCADPFNRRAIRTSMGTVFQLPWAPAPRPWPQATFDALRAD 198 Query: 208 QTIGLSSDSKKPLEQEIKN-----DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 ++ + + ++AL G+EG GL A + M + + Sbjct: 199 GFTSVALALDECAVRLDDPALADSGRVALFFGSEGTGLSDDVLSAVDRSAIIPMSRGVDS 258 Query: 263 LNVSNAAAVALYIT-QNHF 280 LNV+ ++AVA + Sbjct: 259 LNVAASSAVAFWELCARRR 277 >gi|218547893|ref|YP_002381684.1| methyltransferase [Escherichia fergusonii ATCC 35469] gi|218355434|emb|CAQ88042.1| putative methyltransferase [Escherichia fergusonii ATCC 35469] gi|323967625|gb|EGB63038.1| SpoU rRNA methylase [Escherichia coli M863] gi|323978389|gb|EGB73474.1| SpoU rRNA methylase [Escherichia coli TW10509] gi|327252291|gb|EGE63963.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli STEC_7v] Length = 345 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 93/244 (38%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + +K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGKPLFKTSLPEKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|16762567|ref|NP_458184.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144056|ref|NP_807398.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052646|ref|ZP_03345524.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417916|ref|ZP_03351009.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425217|ref|ZP_03357967.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580806|ref|ZP_03362632.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213647939|ref|ZP_03377992.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289826480|ref|ZP_06545592.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25331661|pir||AF0969 tRNA (guanosine-2'-O-)-methyltransferase (EC 2.1.1.34) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504872|emb|CAD03250.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139692|gb|AAO71258.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 229 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPGSRMRTMASAAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + SD + +++G E G+ + Sbjct: 69 SWVQVKTHRTIDDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|328875034|gb|EGG23399.1| hypothetical protein DFA_05531 [Dictyostelium fasciculatum] Length = 487 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 84/215 (39%), Gaps = 17/215 (7%) Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET-----------APLLSPTLDA 128 + PV V Q +D VH G+ ++ + +D Sbjct: 273 KEIIKKCKELGVPVYPVKKQLLDTFSKW-NVHNGMVMDCSPLTAESIDKLQVITKEAMDK 331 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +++ L++ LD + DP N GAI+R+ F G++TT ++S + V +K+++GALE P Sbjct: 332 LKSPPLVVALDEIWDPQNTGAIIRTCHFFGVSGVVTTDKHSSPLTPVASKASAGALEDTP 391 Query: 189 YIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + ++ + + KPL L++G EG G+ + Sbjct: 392 IYKTMSMYGFLKGSKENGWKIMGTSLGEDSKPLNSVKLTQPTILVIGNEGFGVSDNIIQE 451 Query: 248 ATSMAHLHMPGII----KALNVSNAAAVALYITQN 278 + + ++LN S +A + + N Sbjct: 452 CDETVKIPVSNKANPKLESLNASVSAGIVINHLLN 486 >gi|260599948|ref|YP_003212519.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter turicensis z3032] gi|260219125|emb|CBA34480.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter turicensis z3032] Length = 229 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGNRMRTMASSAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + SD + +++G E G+ + Sbjct: 69 SWVEVKTHRNIGDAVGHLKARGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITEE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALRLADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|237728947|ref|ZP_04559428.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter sp. 30_2] gi|226909569|gb|EEH95487.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter sp. 30_2] Length = 229 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 16 RQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASSAAGSNSWVQVK 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ SD + +++G E G+ + + A Sbjct: 75 THLTIGDAVTHLKSRGMQVLATHLSDKAVDFREIDYMRPTCILMGQEKTGITQEALDLAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 QDIIIPMTGMVQSLNVSVASALILYEAQRQR 165 >gi|317494702|ref|ZP_07953114.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917304|gb|EFV38651.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 230 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ A++R+A A + + +++ +A Sbjct: 16 RQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQV-HAVWPGKTMRTMVSTAAGSNSWVSVK 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + S + + +++G E G+ + A Sbjct: 75 THPDISSAVSTLKAEGMQILATNLSSTAVDFREIDYTRPTCILMGQEKYGITAEALALAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 QDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|254374182|ref|ZP_04989664.1| hypothetical protein FTDG_00345 [Francisella novicida GA99-3548] gi|151571902|gb|EDN37556.1| hypothetical protein FTDG_00345 [Francisella novicida GA99-3548] Length = 250 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 90/259 (34%), Gaps = 15/259 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD 84 + + YK+++ + S+ + + + G+ AL P ++I +L T+ A Sbjct: 5 SQKLYKEIKKLH-SSQGRKKSQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPL 63 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + + + + + L + + ++VLD + DP Sbjct: 64 NKK------YIITEKDFEALSQTQNPQGVL---ILAEKPKLEELSFSDDFILVLDRIQDP 114 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIG ILR+A+A +I + ++ GA + + I+NL + Sbjct: 115 GNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSLKFSYITNLAELKNIAKL 174 Query: 205 WGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + L+ G E G+ + + I++L Sbjct: 175 QQRKIWLTTPHQGVSCYAKDFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIESL 231 Query: 264 NVSNAAAVALYITQNHFAK 282 NV+ AA + L+ + Sbjct: 232 NVAQAATIYLFEGLRQRLR 250 >gi|294506881|ref|YP_003570939.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salinibacter ruber M8] gi|294343209|emb|CBH23987.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salinibacter ruber M8] Length = 258 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 52/152 (34%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R ++ V++ + + N+ A++RSA A + + Sbjct: 63 NRTRSVVPVVEGLVNTGNVSAVMRSAEALGHQDMHVVSGEHDRYKHSQRTAQGAQHWLDV 122 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + A + P+ AL+ G E G+ E + Sbjct: 123 WHWDAPTACATHLQDAGYRVVAMHLHADTVPIRDLDFTQPTALVFGNEDAGVTDTMLEAS 182 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +PG ++ NVS AAAVALY Q Sbjct: 183 DAACEVPLPGFTESFNVSVAAAVALYHAQQDR 214 >gi|83815313|ref|YP_445016.1| rRNA methylase [Salinibacter ruber DSM 13855] gi|83756707|gb|ABC44820.1| rRNA methylase [Salinibacter ruber DSM 13855] Length = 247 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 52/152 (34%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R ++ V++ + + N+ A++RSA A + + Sbjct: 52 NRTRSVVPVVEGLVNTGNVSAVMRSAEALGHQDMHVVSGEHDRYKHSQRTAQGAQHWLDV 111 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + A + P+ AL+ G E G+ E + Sbjct: 112 WHWDAPTACATHLQDAGYRVVAMHLHADTVPIRDLDFTQPTALVFGNEDAGVTDTMLEAS 171 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +PG ++ NVS AAAVALY Q Sbjct: 172 DAACEVPLPGFTESFNVSVAAAVALYHAQQDR 203 >gi|332662188|ref|YP_004444976.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM 1100] gi|332331002|gb|AEE48103.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM 1100] Length = 209 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 4/160 (2%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L R L ++L++V+DPHN+GA+LRS + I ++ L + Sbjct: 12 LAQNRQFDLTVILENVDDPHNVGAVLRSCDSVGIREIFVLYTRPGLQNHKLELGKRTSAG 71 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLR 241 +I + + M + + + AL+ G E GL Sbjct: 72 SRKWIDVYLYREVDACMEHVRRNYQRVYATHLAHDAKSLYELDLAQSAALMFGNEADGLS 131 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 A + G+ ++LNVS A AV+LY + Sbjct: 132 ELALSQADGNFIIPQVGMAQSLNVSVACAVSLYEAFRQRS 171 >gi|218960735|ref|YP_001740510.1| putative rRNA methylase [Candidatus Cloacamonas acidaminovorans] gi|167729392|emb|CAO80303.1| putative rRNA methylase [Candidatus Cloacamonas acidaminovorans] Length = 246 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 90/249 (36%), Gaps = 19/249 (7%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ + + QK + Q + + G T+ + + + Sbjct: 12 SNEHLRYLSKLKQK-KFRLQEGLVIVEGKRTLEQLFAWDIKAKELYIVESEPIVSAAIS- 69 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 TV Q + ++ E + L + P LD ++DP Sbjct: 70 --------YTVSEQGMKRLCDSEQPQKIAGLFSLPKPRKIAFKKAF-----YLDDISDPG 116 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I R A AF+ D +I + + S + +++ GA+ +P+ K H + Sbjct: 117 NLGTIFRIAAAFNIDCLILSPKTCEISSPKVIRASLGAVYKVPFFFCEMEKLQELKAHIF 176 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G + ++ + LG E KG+ + A + MPG +++LNV Sbjct: 177 ALDMQGKIPLTNF----APPSEPYIVALGNEAKGISSSILKIAEETLCIPMPGEMESLNV 232 Query: 266 SNAAAVALY 274 S ++A+ Y Sbjct: 233 SVSSAILAY 241 >gi|317009469|gb|ADU80049.1| RNA methyltransferase [Helicobacter pylori India7] Length = 227 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 87/224 (38%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + LN+ K+ ++ +K + + L P + + K Sbjct: 4 VVYGKQVMMHLLNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + L+ L ++ +Q L+VL + D NIG I RSA DG+I ++ Sbjct: 62 NHQGVLAKVELPLALPLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S L + + T L +S + + K Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMQRDFDSLNVSVAAGILM 223 >gi|157164272|ref|YP_001466038.1| RNA methyltransferase [Campylobacter concisus 13826] gi|112801236|gb|EAT98580.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter concisus 13826] Length = 226 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG LN + + ++ +K +L + + V Q + Sbjct: 2 IIYGKQLFLHILNKRPQILEEIYLSKECDKKL-FSKICGTGKKIIRVDNQKAQSMA-HGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG + ++ + VL ++D NIGAI RSA A C+G++ + Sbjct: 60 NHQGFLASVSEFEFSDFSELKKLNFIAVLYGISDVGNIGAIARSAYALGCEGLVIVTKSV 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + +S + I I +L + ++ + K +++ K Sbjct: 120 NMQ---GVLRSSSGAAYEIPIAIFEDGLSLLNELKQCGFRLYATASNGKNIKEMKFAGKR 176 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL++G+EG+G+ K + + +LNVS A A+ Sbjct: 177 ALVMGSEGEGIPQKALAKCDECVGIKLKDGWDSLNVSAAFAIIC 220 >gi|260892338|ref|YP_003238435.1| RNA methyltransferase, TrmH family, group 2 [Ammonifex degensii KC4] gi|260864479|gb|ACX51585.1| RNA methyltransferase, TrmH family, group 2 [Ammonifex degensii KC4] Length = 152 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VL P N G I R+ A + ++ L ++ + Sbjct: 1 MHIVLVEPEIPANTGNIARTCAATGATLHLVRPLGFYTDDRHLRRAGLDYWHLVKIYYHD 60 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMA 252 + D + F + ++ Q L+ G E GL + + Sbjct: 61 SFADLCRAYPDACFFLTTTRA--ERWYTQVRYPPGSFLVFGKESTGLPEEILQAFPDRWI 118 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++NA A+ LY Sbjct: 119 RIPMVPGARSLNLANAVAIVLYEALRQ 145 >gi|218659677|ref|ZP_03515607.1| rRNA methylase protein [Rhizobium etli IE4771] Length = 343 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 73/191 (38%) Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 V V + I I ++ + + R + + LD V DP N+ Sbjct: 6 ASGGLVLEVSEKVIGSITRRDNPQMVVGIFDQRWKPLKDIRPREGETWVALDRVRDPGNL 65 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G I+R+A A G+I + S ++ G++ +P R + + + Sbjct: 66 GTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVARATPEEFLAWRKSAGVS 125 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + + I L++G E GL + + A ++A + G +LN++ Sbjct: 126 VVATHLAGAVDYRTIDYRKKPIVLLMGNEQSGLPEQLAKEADALARIPQQGRADSLNLAV 185 Query: 268 AAAVALYITQN 278 A AV L+ + Sbjct: 186 ATAVMLFEARR 196 >gi|303256290|ref|ZP_07342306.1| RNA methyltransferase, TrmH family, group 2 [Burkholderiales bacterium 1_1_47] gi|330998987|ref|ZP_08322712.1| RNA methyltransferase, TrmH family, group 2 [Parasutterella excrementihominis YIT 11859] gi|302861019|gb|EFL84094.1| RNA methyltransferase, TrmH family, group 2 [Burkholderiales bacterium 1_1_47] gi|329575729|gb|EGG57255.1| RNA methyltransferase, TrmH family, group 2 [Parasutterella excrementihominis YIT 11859] Length = 156 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G I+R + C + E + ++ E+ R Sbjct: 1 MFNIVLVHPEIPPNTGNIIRLSANTGCKLYLIEPLGFNFEDKHMKRAGLDYWEYADIKRF 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250 + L+ + +++ +++ +++ + G+EG GL + + Sbjct: 61 PSYEAFLEAEKPDRDRMFAMTTKAQQLVQEVSFKPGDWFVFGSEGSGLPQEVRALFDPAH 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 M L M ++LN+SN+ A+ +Y Sbjct: 121 MVRLPMRPNNRSLNLSNSVAITVYEAWRQ 149 >gi|188532205|ref|YP_001906002.1| tRNA guanosine-2'-O-methyltransferase [Erwinia tasmaniensis Et1/99] gi|188027247|emb|CAO95086.1| Putative tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99] Length = 231 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ A++R+A A + +++ +A Sbjct: 16 RQHDLTVCMEQVHKPHNVSAVIRTADAIGVHEV-HAVWPGSRMRTMVSSAAGSNSWVQVK 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S S+ + +++G E G+ + E A Sbjct: 75 THRSIADAVSCLKGQNMQILATHLSEKAVDFREVDYTRPTCILMGQEKTGITQEALELAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 RDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|118497361|ref|YP_898411.1| rRNA methyltransferase [Francisella tularensis subsp. novicida U112] gi|195536050|ref|ZP_03079057.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp. novicida FTE] gi|118423267|gb|ABK89657.1| rRNA methyltransferase [Francisella novicida U112] gi|194372527|gb|EDX27238.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp. novicida FTE] Length = 250 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 90/259 (34%), Gaps = 15/259 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD 84 + + YK+++ + S+ + + + G+ AL P ++I +L T+ A Sbjct: 5 SQKLYKEIKKLH-SSQGRKKSQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPL 63 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + + + + + L + + ++VLD + DP Sbjct: 64 NKK------YIITEKDFEALSQTQNPQGVL---ILAEKPKLEELSFDDDFILVLDRIQDP 114 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIG ILR+A+A +I + ++ GA + + I+NL + Sbjct: 115 GNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSLKFGYITNLAELKNIAKL 174 Query: 205 WGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + L+ G E G+ + + I++L Sbjct: 175 QQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIESL 231 Query: 264 NVSNAAAVALYITQNHFAK 282 NV+ AA + L+ + Sbjct: 232 NVAQAATIYLFEGLRQRLR 250 >gi|320539303|ref|ZP_08038973.1| putative tRNA mG18-2'-O-methyltransferase, SAM-dependen [Serratia symbiotica str. Tucson] gi|320030695|gb|EFW12704.1| putative tRNA mG18-2'-O-methyltransferase, SAM-dependen [Serratia symbiotica str. Tucson] Length = 231 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + L+ V PHN+ AI+R+A A + + +++ +A Sbjct: 16 RQPDLTVCLEQVLKPHNVSAIIRTADAVGVHQV-HAVWPTTRMRTLVSSAAGSNNWVNVK 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + S + ++LG E G+ + A Sbjct: 75 THHTISDTVNHLKTQGMQVLATHLSSRAVDFREVDYTRPTCVLLGQEKTGMTDEALALAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 QDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|254372726|ref|ZP_04988215.1| rRNA methyltransferase [Francisella tularensis subsp. novicida GA99-3549] gi|151570453|gb|EDN36107.1| rRNA methyltransferase [Francisella novicida GA99-3549] gi|328676847|gb|AEB27717.1| rRNA methyltransferase [Francisella cf. novicida Fx1] Length = 250 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 90/259 (34%), Gaps = 15/259 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD 84 + + YK+++ + S+ + + + G+ AL P ++I +L T+ A Sbjct: 5 SQKLYKEIKKLH-SSQGRKKSQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPL 63 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + + + + + L + + ++VLD + DP Sbjct: 64 NKK------YIITEKDFEALSQTQNPQGVL---ILAEKPKLEELSFSDDFILVLDRIQDP 114 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIG ILR+A+A +I + ++ GA + + I+NL + Sbjct: 115 GNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSLKFSYITNLAELKNIAKL 174 Query: 205 WGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + L+ G E G+ + + I++L Sbjct: 175 QQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIESL 231 Query: 264 NVSNAAAVALYITQNHFAK 282 NV+ AA + L+ + Sbjct: 232 NVAQAATIYLFEGLRQRLR 250 >gi|256752504|ref|ZP_05493361.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus CCSD1] gi|256748639|gb|EEU61686.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus CCSD1] Length = 98 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +A ++G EGKG+ + + + M G I +LN S AA++ +Y + Sbjct: 37 VNYDFPVAFVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQVVSKRK 95 >gi|270265245|ref|ZP_06193507.1| hypothetical protein SOD_l00950 [Serratia odorifera 4Rx13] gi|270040879|gb|EFA13981.1| hypothetical protein SOD_l00950 [Serratia odorifera 4Rx13] Length = 231 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + L+ V+ PHN+ AI+R+A A + + +++ +A Sbjct: 10 CEMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGVHQV-HAVWPTSRMRTLVSSAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + S + ++LG E G+ + Sbjct: 69 SWVNVKTHRTISDAVTHLKDQGMQILATHLSARAVDFREVDYTRPTCVLLGQEKTGITEE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|62182237|ref|YP_218654.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167549007|ref|ZP_02342766.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168233268|ref|ZP_02658326.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235358|ref|ZP_02660416.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168241923|ref|ZP_02666855.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168260501|ref|ZP_02682474.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168818425|ref|ZP_02830425.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444680|ref|YP_002042992.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448230|ref|YP_002047774.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469893|ref|ZP_03075877.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735347|ref|YP_002116686.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|200387615|ref|ZP_03214227.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207858980|ref|YP_002245631.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585541|ref|YP_002639340.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910216|ref|ZP_04654053.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|62129870|gb|AAX67573.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194403343|gb|ACF63565.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406534|gb|ACF66753.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456257|gb|EDX45096.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710849|gb|ACF90070.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291598|gb|EDY30950.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199604713|gb|EDZ03258.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205325898|gb|EDZ13737.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205332504|gb|EDZ19268.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339031|gb|EDZ25795.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344462|gb|EDZ31226.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350250|gb|EDZ36881.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710783|emb|CAR35144.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470069|gb|ACN47899.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320088164|emb|CBY97926.1| putative RNA methylase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322716725|gb|EFZ08296.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 229 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPGSRMRTMASAAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + SD + +++G E G+ + Sbjct: 69 SWVQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|302756691|ref|XP_002961769.1| hypothetical protein SELMODRAFT_77463 [Selaginella moellendorffii] gi|300170428|gb|EFJ37029.1| hypothetical protein SELMODRAFT_77463 [Selaginella moellendorffii] Length = 321 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 99/292 (33%), Gaps = 35/292 (11%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA----ALNNPSRKIFQLLAT 74 H + L + K + + S + E++ + G + + A+ N + F+L Sbjct: 30 HVSSLS--NPYVKHLVKMRESSSYREATESVLVVGSNLLQELCEFAVTNNTEAAFELEML 87 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS----------- 123 R + + K+ G ++ A+ L S Sbjct: 88 LVVEERDFPQELSTFSQRTVFLTASVMQKLAGLKSSESVDAIGVVKLPSSFQKLSPDESL 147 Query: 124 -----PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 N L++LD + DP N+G +LR+A AF+ DG+ + + Sbjct: 148 ASAGATLEKWCPNPHRLLILDGIQDPGNLGTLLRTATAFAWDGVFLLPGCCDPFNDKTLR 207 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---------- 228 ++ A +P + + G+ KN Sbjct: 208 ASRAANFRMPIAAGTWPQIQAFGKANAMKFYAGIPEQVHSSRLHSKKNSPEALIEKIKSV 267 Query: 229 --IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L+LG+EG+GL + + + MPG ++LNV+ + +++ N Sbjct: 268 KSLCLVLGSEGQGLSDPARRGS-QHLTVPMPGKFESLNVAVVGGILMFLLMN 318 >gi|212711590|ref|ZP_03319718.1| hypothetical protein PROVALCAL_02665 [Providencia alcalifaciens DSM 30120] gi|212685692|gb|EEB45220.1| hypothetical protein PROVALCAL_02665 [Providencia alcalifaciens DSM 30120] Length = 226 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R L + L+ ++ PHN+ AI+RSA A I ++ +A Sbjct: 4 MRQPDLTLCLEEIHKPHNVSAIVRSADAVGIHNI-HAVWPDQHVKLSVSSAAGSNSWVKV 62 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 S Q + SDS + +++G E G+ K A Sbjct: 63 IPHQSTENAISQIKSQGMQILVTNLSDSAVDFREIDYTQPTCIMVGQEKTGISDKALALA 122 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 123 DQHIIIPMVGMVQSLNVSVASALILYEAQRQR 154 >gi|154246890|ref|YP_001417848.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2] gi|154160975|gb|ABS68191.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2] Length = 154 Score = 89.1 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 54/144 (37%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + N G ILR F + I P A ++ ++ + + R ++ Sbjct: 5 IALYCPDIAQNAGTILRIGACFGIEVHIIEPAGFPVGDAGFRRAGMDYIDQVTWRRHASF 64 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + G + + ++ +PL L+ G E G+ A + + Sbjct: 65 AAFDAERRAEGRRVVLFTTQGAEPLFGFRFQPDDVLLFGRESAGVPESVHAVADARLRIP 124 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 M +++LNV+ +A +AL Sbjct: 125 MRAGVRSLNVAVSAGIALAEALRQ 148 >gi|161616825|ref|YP_001590790.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168464947|ref|ZP_02698839.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|161366189|gb|ABX69957.1| hypothetical protein SPAB_04644 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|195632097|gb|EDX50581.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 229 Score = 89.1 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPGSRMRTMASAAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + SD + +++G E G+ + Sbjct: 69 SWVQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|146283285|ref|YP_001173438.1| rRNA methylase [Pseudomonas stutzeri A1501] gi|145571490|gb|ABP80596.1| rRNA methylase [Pseudomonas stutzeri A1501] Length = 241 Score = 89.1 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 86/255 (33%), Gaps = 20/255 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSA----ALNNPSRKIFQLLATKNALARLDWD 84 ++ ++ +QK ++ ++ + G H V AL NP + +L T + Sbjct: 2 KFEDIKKLHQK-KYRAEFGLFLVEGEHLVLELQKAALLNPLLQGSELYVT-------NAY 53 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 PF + + + +I + +AL P+ + A + + L + DP Sbjct: 54 EQWQSPFKTHLISDRQMAQIADTKTPQGIVALV--PMPDAPVSAPVAGERAIYLHEIQDP 111 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G ILR+ F + + + + +S+ GA+ H P L + Sbjct: 112 GNLGTILRTLAWFGNFRCLLSPGSVDPYNPKVVRSSMGAIFHAPMELDVALDSLRTRFAR 171 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKAL 263 + + G E +G+ + + G I++L Sbjct: 172 IACLDMQGEPVQSTAFTTFE-----CYLFGNEARGVPRDQLNALGARPFTIPGCGAIESL 226 Query: 264 NVSNAAAVALYITQN 278 N++ + Y Sbjct: 227 NLAATVNMCAYELSR 241 >gi|320011830|gb|ADW06680.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC 33331] Length = 274 Score = 89.1 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 11/245 (4%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + R G + A + LL+ K + + Sbjct: 17 DYTGLTDVELRRRREPAEGLFIAEGEKVIRRARDAGYEMRSMLLSAK--WIDVMREVIEE 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVND 143 PV V P +++ G VH+G P + + + V + + D Sbjct: 75 TTAPVYAVTPALAERVTGYH-VHRGALASMQRKPLPDAGALLSPGTGDVRRVAVFEDIVD 133 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+GA R+A A D ++ T R + K + G++ H+P+ R+++ + L + Sbjct: 134 HANLGAAFRNAAALGVDAVLLTPRCADPLYRRAVKVSMGSVFHVPWTRLTSWPEDLALLR 193 Query: 204 SWGFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 GF T L + + +K+AL+ G EG GL P+ A + + M + Sbjct: 194 QAGFTTAALCLSDRSITLDELVARRYEKLALVFGTEGDGLTPRALAAADAHVRIPMDAGV 253 Query: 261 KALNV 265 +LNV Sbjct: 254 DSLNV 258 >gi|205354655|ref|YP_002228456.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274436|emb|CAR39468.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629793|gb|EGE36136.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 229 Score = 89.1 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ AI+R+A A + S + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPSSRMRTMASAAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + SD + +++G E G+ + Sbjct: 69 SWVQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|133777689|gb|AAI15624.1| RNA methyltransferase like 1 [Mus musculus] gi|133777901|gb|AAI15623.1| RNA methyltransferase like 1 [Mus musculus] Length = 311 Score = 89.1 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 85/293 (29%), Gaps = 50/293 (17%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-HPFPVKTV 96 + + + L G ++ AL + + + L D VK Sbjct: 5 KSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEYVKELPVDKLKDVSLIKVKFE 64 Query: 97 PPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + +V + + + + P L+++ D++ DP N+G ILRSA Sbjct: 65 DIKDWSDLVTPQGIMGIFAKPDPVKMTYPETLLHHTLPLVLICDNLRDPGNLGTILRSAA 124 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALE---------------HIPYIRISNLTDALQ 200 C ++ TK + + ++ GA H+P + D Sbjct: 125 GAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNNVEWETVPNHLPPDTRVYVADNCG 184 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKND-----------------------------KIAL 231 D + A+ Sbjct: 185 HYAQVQMSDKTGDRDWACDRRFLKFHKYEEDLDTKTRKDWLPKLEVQSYDLDWTGAPAAV 244 Query: 232 ILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++G E G+ ++ + A + + + +LN + AA++ L+ + Sbjct: 245 VIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQL 297 >gi|56415633|ref|YP_152708.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364560|ref|YP_002144197.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129890|gb|AAV79396.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096037|emb|CAR61624.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 229 Score = 89.1 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPGSRMRTMASAAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + SD + +++G E G+ + Sbjct: 69 SWVQVKTHRTIGDAVAHLKGREMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|56708186|ref|YP_170082.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670657|ref|YP_667214.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|254370673|ref|ZP_04986678.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis FSC033] gi|56604678|emb|CAG45741.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320990|emb|CAL09124.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|151568916|gb|EDN34570.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis FSC033] gi|282159402|gb|ADA78793.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis NE061598] Length = 250 Score = 89.1 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 88/259 (33%), Gaps = 15/259 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD 84 + + YK+++ + S+ + + + G+ AL P ++I +L T+ A Sbjct: 5 SQKLYKEIKKLH-SSQGRKKSQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPL 63 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + + + + + L + ++VLD + DP Sbjct: 64 NKK------YIITEKDFEALSQTQNPQGVL---ILAEKPKLEQLSFDDDFILVLDRIQDP 114 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIG ILR+A+A +I + ++ GA + + I+NL Sbjct: 115 GNIGTILRTAIAVGLKEVILINDTVDPFNPKAIRAGMGAQFSLKFGYITNLAKLKNIAKL 174 Query: 205 WGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + L+ G E G+ + + I++L Sbjct: 175 QQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIESL 231 Query: 264 NVSNAAAVALYITQNHFAK 282 NV+ AA + L+ + Sbjct: 232 NVAQAATIYLFEGLRQRLR 250 >gi|300714631|ref|YP_003739434.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661] gi|299060467|emb|CAX57574.1| Putative tRNA/rRNA methyltransferase [Erwinia billingiae Eb661] Length = 232 Score = 89.1 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ A++R+A A + +++ +A Sbjct: 16 RQHDLTVCMEQVHKPHNVAAVIRTADAVGVHEV-HAVWPGSRMRTMVSSAAGSNSWVQVK 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + SD + +++G E G+ + + A Sbjct: 75 THSNIADAVGHLKGQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQQALDLAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 QDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|326771653|ref|ZP_08230938.1| 23S rRNA methyltransferase [Actinomyces viscosus C505] gi|326637786|gb|EGE38687.1| 23S rRNA methyltransferase [Actinomyces viscosus C505] Length = 310 Score = 89.1 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 108/260 (41%), Gaps = 7/260 (2%) Query: 26 NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--L 81 ++ ++ + ++ + G V A+ + ++ + T+ AL R Sbjct: 42 SNPASARISRVAGLSRRNARAKHRRFLVEGPQGVREAVRHVPGRVLDVYLTEAALERHSE 101 Query: 82 DWDANLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 WD + V Q +D + + + +A E A A+ ++L+ VL Sbjct: 102 IWDEAVTAGLYVHVTTQQVMDAMSPDAQGLLAVVATEEATGSEALAAALEGARLVAVLTQ 161 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 DP N G I+R+A A D ++ + + + +S +G+L H+P + L DA+ Sbjct: 162 AQDPGNAGTIIRAADAAGADAVVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVALDDAVT 221 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 +H+ G + L + A +LG E GL P+ A ++ + + G Sbjct: 222 ALHNAGLTVLAADGRGDFDLFEVESLLEAPSAWLLGNEAHGLPPEALSRADAVVSIPIYG 281 Query: 259 IIKALNVSNAAAVALYITQN 278 ++LNV+ AAAV LY + Sbjct: 282 KAESLNVAAAAAVCLYASAR 301 >gi|158334676|ref|YP_001515848.1| RNA methyltransferase [Acaryochloris marina MBIC11017] gi|158304917|gb|ABW26534.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017] Length = 153 Score = 89.1 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 1/150 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL + P N G I R+ A + + + L ++ + Sbjct: 1 MLRVVLVYPEIPPNTGNIARTCAATQTELHLVEPLGFEISNRYLKRAGLDYWPFVKLQTH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 ++ Q G +++ S Q + LI G+E GL P + ++++ Sbjct: 61 ASWAAFEQVRQQQGGRSVSFSKSGTHSYLQFQFCEDDWLIFGSESSGLPPDILQDSSAVL 120 Query: 253 HLHM-PGIIKALNVSNAAAVALYITQNHFA 281 + M +++LN+S +AAV L+ + A Sbjct: 121 RIPMAHEQVRSLNLSVSAAVGLFEARRQLA 150 >gi|204928623|ref|ZP_03219822.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322056|gb|EDZ07254.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 229 Score = 88.7 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPGSRMRTMASAAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + SD + +++G E G+ + Sbjct: 69 SWVQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|134302313|ref|YP_001122282.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis WY96-3418] gi|134050090|gb|ABO47161.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis WY96-3418] Length = 250 Score = 88.7 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 87/259 (33%), Gaps = 15/259 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD 84 + + YK+++ + S+ + + + G+ AL P ++I +L T+ A Sbjct: 5 SQKLYKEIKKLH-SSQGRKKSQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPL 63 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + + + + + L + ++V D + DP Sbjct: 64 NKK------YIITEKDFEALSQTQNPQGVL---ILAEKPKLEQLSFDDDFILVFDRIQDP 114 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIG ILR+A+A +I + ++ GA + + I+NL Sbjct: 115 GNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSLKFGYITNLAKLKNIAKL 174 Query: 205 WGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + L+ G E G+ + + I++L Sbjct: 175 QQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIESL 231 Query: 264 NVSNAAAVALYITQNHFAK 282 NV+ AA + L+ + Sbjct: 232 NVAQAATIYLFEGLRQRLR 250 >gi|197250973|ref|YP_002148674.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198245054|ref|YP_002217703.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197214676|gb|ACH52073.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197939570|gb|ACH76903.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|322612909|gb|EFY09861.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618974|gb|EFY15861.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625249|gb|EFY22076.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630083|gb|EFY26856.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634275|gb|EFY31010.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635824|gb|EFY32533.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642973|gb|EFY39551.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645034|gb|EFY41565.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649866|gb|EFY46289.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653073|gb|EFY49408.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661108|gb|EFY57336.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662403|gb|EFY58616.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667281|gb|EFY63447.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674342|gb|EFY70435.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678450|gb|EFY74511.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680956|gb|EFY76990.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687108|gb|EFY83081.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193170|gb|EFZ78388.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198251|gb|EFZ83357.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200869|gb|EFZ85939.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206623|gb|EFZ91581.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210464|gb|EFZ95350.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216247|gb|EGA00975.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220470|gb|EGA04924.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225334|gb|EGA09568.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228448|gb|EGA12579.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234269|gb|EGA18357.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237254|gb|EGA21321.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244773|gb|EGA28777.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245852|gb|EGA29842.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250965|gb|EGA34841.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257287|gb|EGA40986.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262211|gb|EGA45772.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264578|gb|EGA48082.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268867|gb|EGA52325.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 229 Score = 88.7 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPGSRMRTMASAAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + SD + +++G E G+ + Sbjct: 69 SWVQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|238809673|dbj|BAH69463.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 249 Score = 88.7 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 100/269 (37%), Gaps = 28/269 (10%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 S K+ + ++ + + + + K ++ + ++ + + G H V AL Sbjct: 3 SSKRKGLLNQMEKTVISSVS--NPKIKYLKEVQKDNK----SDYFLVSGYHLVQEALA-- 54 Query: 65 SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124 KN + + + + V + I +AL P Sbjct: 55 ----------KNLVIEIFEEESKSTYKTATLVKSNVLKSISSTMHPDGVVALCLKPKS-- 102 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + +++LD+V DP N+G I+R+A F D +I+ + + V A + Sbjct: 103 -----QIKNKVILLDNVQDPGNVGTIIRNAACFGFDTVISNVNFYN-DKVVRATQGALFQ 156 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + + + L DS K E +I +K+ LILG EG G+ Sbjct: 157 VSLIKENNNEDLIKVLNNEGYFIVATSLDKDSIKLDELKINKEKVVLILGNEGNGINKNL 216 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273 + ++ + ++LNV+ A+ + L Sbjct: 217 YKYCDQKVYIPI--EFESLNVAVASGIIL 243 >gi|197266019|ref|ZP_03166093.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197244274|gb|EDY26894.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 229 Score = 88.7 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPGSRMRTMASAAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + SD + +++G E G+ + Sbjct: 69 SWVQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|324113107|gb|EGC07083.1| SpoU rRNA methylase [Escherichia fergusonii B253] Length = 345 Score = 88.7 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 93/244 (38%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRLAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + +K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGKPLFKTSLPEKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|282599849|ref|ZP_05972117.2| tRNA guanosine-2'-O-methyltransferase [Providencia rustigianii DSM 4541] gi|282567380|gb|EFB72915.1| tRNA guanosine-2'-O-methyltransferase [Providencia rustigianii DSM 4541] Length = 226 Score = 88.7 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R L + L+ ++ PHN+ AI+RSA A I ++ +A Sbjct: 4 MRQPDLTLCLEEIHKPHNVSAIVRSADAIGIHQI-HAIWPDQHVKLSVSSAAGSNSWVKV 62 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 S Q S+ + +++G E KG+ K A Sbjct: 63 ISHSSTEDAIAQIKAQGMQVLATNLSEHAVDFREIDYTRPTCIMMGQEKKGISQKALALA 122 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ +Y Q Sbjct: 123 DQHIIIPMAGMVQSLNVSVASALIMYEAQRQR 154 >gi|17230844|ref|NP_487392.1| hypothetical protein alr3352 [Nostoc sp. PCC 7120] gi|17132447|dbj|BAB75051.1| alr3352 [Nostoc sp. PCC 7120] Length = 153 Score = 88.7 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 1/146 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL + P N G I R+ A + + L ++ ++ L Sbjct: 4 VVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYHKTL 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 G + +G S Q L+ G+E GL P + ++ Sbjct: 64 EAFENAHQERGGRLLGFSVGGSSSYIQFPYQADDWLLFGSETTGLPPTVLSACDATLYIP 123 Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280 M +++LN+S + AV L+ + Sbjct: 124 MAEPGVRSLNLSVSVAVGLFEVRRQL 149 >gi|308044253|ref|NP_001183802.1| hypothetical protein LOC100502395 [Zea mays] gi|238014636|gb|ACR38353.1| unknown [Zea mays] Length = 347 Score = 88.7 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 33/115 (28%) Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 + + S S I S + Sbjct: 180 HVISCDSSKRYRDNRHVSMGAEKWLDIEIWNSPAECFSALKKRGYRIATTYLGTDSVCVY 239 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + A+++G E +G+ E + + M G++ + NVS AA + ++ Sbjct: 240 DMDWSQPTAIVVGNELRGISDDALELSDLHCSIPMKGMVDSFNVSVAAGILMHHA 294 >gi|222034286|emb|CAP77027.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Escherichia coli LF82] gi|312947153|gb|ADR27980.1| putative methyltransferase [Escherichia coli O83:H1 str. NRG 857C] Length = 345 Score = 88.7 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ ++ ++ L++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTSVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|227327134|ref|ZP_03831158.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 230 Score = 88.7 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R L + ++ V+ PHN+ A++R+A A I + +++ +A Sbjct: 14 NCRQPDLTICMEQVHKPHNVSAVIRTADAVGVHEI-HAIWPTSRMKTLVSSAAGSNSWVQ 72 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + S+ + ++LG E G+ + + Sbjct: 73 VKTHRNIGDAVGHLKAEGMQVLATNLSEHAVDFREIDYTRPTCILLGQEKTGITAEALKL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQR 165 >gi|289704520|ref|ZP_06500955.1| RNA 2'-O ribose methyltransferase substrate binding [Micrococcus luteus SK58] gi|289558778|gb|EFD52034.1| RNA 2'-O ribose methyltransferase substrate binding [Micrococcus luteus SK58] Length = 298 Score = 88.7 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 88/278 (31%), Gaps = 30/278 (10%) Query: 27 HRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNP--------------SRKIFQ 70 H +++++ + + G L + + Q Sbjct: 10 HPRAERVRAVAALAGRSARRRTGTFLVEGPQACREVLRAHLGEGPAAAAGQWRAGQVLAQ 69 Query: 71 LLATKNALARLDWDANLPHPFP-----------VKTVPPQTIDKIVGKEAVHQGLALETA 119 + + + R A L V+ + + + +A+ Sbjct: 70 VYVSVGLVDRDPALAELVARVRDRPTPGGERVLVREASDEVLTAMADAVTGQDIVAVARM 129 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 P + ++L VL V DP N G ++R+A A D ++ T + + +S Sbjct: 130 PQPQTVEAVLEEARLAAVLCRVQDPGNAGTVIRAADAAGADAVVLTPGSVDPFNPKVVRS 189 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAE 236 +G+L H+P + A + G Q L+ A + G E Sbjct: 190 TAGSLFHLPVVTAVPAEAAAAAARAAGLQVWAADGYGADRLDALAPGLVAAPTAWLFGNE 249 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +GL A + + G ++LNV AA V LY Sbjct: 250 AQGLDDGELALADRRVAVPLYGAAESLNVGTAATVCLY 287 >gi|320667558|gb|EFX34478.1| putative methyltransferase [Escherichia coli O157:H7 str. LSU-61] Length = 345 Score = 88.7 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 93/244 (38%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++VL++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLVLENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|296100480|ref|YP_003610626.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054939|gb|ADF59677.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 206 Score = 88.7 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +++G E G+ + + A + M G++++LNVS A+A+ LY Q Sbjct: 87 YTRPTCILMGQEKTGITQEALDLADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 142 >gi|154509022|ref|ZP_02044664.1| hypothetical protein ACTODO_01539 [Actinomyces odontolyticus ATCC 17982] gi|153798656|gb|EDN81076.1| hypothetical protein ACTODO_01539 [Actinomyces odontolyticus ATCC 17982] Length = 246 Score = 88.7 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 89/240 (37%), Gaps = 14/240 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107 + G V + + + ++A ++ V V + + G Sbjct: 2 LVEGPQAVRELTAHRPFAVRDVYVREDAWETHADVVDVARRATRWVHPVTAEVSAALSGD 61 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 A+ + LS L + ++VL DP N+G I+R+A AF G++ Sbjct: 62 --SQGICAVASLDALSRELPEPSVGETIVVLAQGRDPGNVGTIIRTADAFGAVGVVAVAG 119 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF----------QTIGLSSDSK 217 + S + +S++G++ HIP + + DA +H + Sbjct: 120 TVDAASPKVVRSSAGSVFHIPVCVVPSFADARALIHGRSAALLGTSGGAASISLSDLLVQ 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + A + G E +GL + + M G ++LNV++AAA L+ +Q Sbjct: 180 VVSARSRLSQSHAWVFGNEARGLSGDEMRLCDGLVSIPMTGDAESLNVASAAATCLFASQ 239 >gi|120555648|ref|YP_959999.1| tRNA guanosine-2'-O-methyltransferase [Marinobacter aquaeolei VT8] gi|120325497|gb|ABM19812.1| tRNA guanosine-2'-O-methyltransferase [Marinobacter aquaeolei VT8] Length = 244 Score = 88.7 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 1/152 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L ++ D V+ P N+ AI+RS AF + A + + Sbjct: 16 RQPDLRVLTDQVHKPRNLSAIIRSCDAFGLA-NMHVVWPKEGFRAFRKTAGGSFHWVTTH 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + SD + +I+G E G+ P T E A Sbjct: 75 THPTMDNAVTELKAQGHKLYAAQLSDRAVDFREVDYTVPCTIIMGNEVDGVNPVTAEQAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G++++LNVS+A ++ L Q Sbjct: 135 EHIVIPMMGMVESLNVSSACSIILSEAQRQRK 166 >gi|16767028|ref|NP_462643.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992299|ref|ZP_02573397.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|16422312|gb|AAL22602.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205329407|gb|EDZ16171.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248891|emb|CBG26745.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996007|gb|ACY90892.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160280|emb|CBW19803.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914769|dbj|BAJ38743.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226797|gb|EFX51847.1| tRNA Guanosine18-2'-O- -methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132104|gb|ADX19534.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990592|gb|AEF09575.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 229 Score = 88.7 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPGSRMRTMASAAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + SD + +++G E G+ + Sbjct: 69 SWVQVKTHRTIGDAVAHLKSRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|332072055|gb|EGI82542.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA17570] Length = 212 Score = 88.7 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 86/219 (39%), Gaps = 10/219 (4%) Query: 58 SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 A+ I ++ A +N +L FP + I + QG+ Sbjct: 3 EEAVQAGVT-IEKIFALENYRNQLAA-------FPQTVWISEDILLDLADSQTPQGIVAV 54 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 D + L + + V DP N+G I+R+A A G+I + + + S Sbjct: 55 VQKEEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTL 112 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S G+ H+P R+++ + S + + L++G EG Sbjct: 113 RSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEG 172 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 173 QGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFYL 211 >gi|156386580|ref|XP_001633990.1| predicted protein [Nematostella vectensis] gi|156221067|gb|EDO41927.1| predicted protein [Nematostella vectensis] Length = 274 Score = 88.7 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 92/278 (33%), Gaps = 41/278 (14%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 + + + L G+ V AL I + KN + +L + P V + Sbjct: 1 RSYRDRHNRILLEGLRIVHDALLANMEPITIFYSNKNLIDKLTSKLPSRYFVP---VDDK 57 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 T+ ++ + + P +++ L ++ D V DP N+G I+R+ A C Sbjct: 58 TMKNLLTALTPPGIVGVFKKPCSQLKIES-NVLPLTVICDRVKDPSNLGTIVRTCAAAGC 116 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYI----------------------------- 190 +ITT+ + + + +G +P Sbjct: 117 QALITTEYSTDLWDPKVLRGGAGGHFRVPLYGLLSWKQIADMLGDDTRLYLAESDNTGKI 176 Query: 191 ----RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + + H +G + L S E + ALI+G E G+ + Q Sbjct: 177 IISPWKYFVVENPISWHCYGTLNLDLGSIIIPYFEVDWTLGPSALIVGGETTGISTEAQM 236 Query: 247 TA----TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A H+ M G I +L+ + A+ +Y Sbjct: 237 LACGERGQAVHIPMVGNIDSLSAGISVALIVYEAFRQI 274 >gi|72383592|ref|YP_292947.1| tRNA/rRNA methyltransferase SpoU [Prochlorococcus marinus str. NATL2A] gi|72003442|gb|AAZ59244.1| tRNA (guanosine-2'-O-)-methyltransferase [Prochlorococcus marinus str. NATL2A] Length = 229 Score = 88.7 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 1/147 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +++++V PHN+ AI+RS A + S I + + Sbjct: 22 LTVLIENVEKPHNLSAIIRSCDAVGVLEAYAIFNKEKFLTFNSTAQGSQKWVKINQYKKT 81 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + K + L+ S + + A +LGAE G+ + H Sbjct: 82 TEAIKVLKEKGFKLYGTNLNPRSIDYRKCD-FKGPTAFVLGAEKWGISEEASSLMDEHIH 140 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS AA+ L+ Sbjct: 141 IPMRGMVESLNVSVAASALLFEALRQR 167 >gi|304310379|ref|YP_003809977.1| RNA methyltransferase, TrmH family [gamma proteobacterium HdN1] gi|301796112|emb|CBL44317.1| RNA methyltransferase, TrmH family [gamma proteobacterium HdN1] Length = 155 Score = 88.7 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 4/152 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I+R + + L ++ H Sbjct: 1 MPLHIVLYQPEIPPNTGNIIRLCANSGAQLHLIKPLGFVLDDKRLRRAGLDY--HEWARV 58 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--AT 249 + + + + +S+ D ALILG E +GL + ++ + Sbjct: 59 QIHESFTEFLENGKVGRCFAVSTKGAVGYHTPHYQDGDALILGPETRGLPEEIRKHPRVS 118 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M ++LN+SNAAA+ LY Sbjct: 119 ACIRIPMMENSRSLNLSNAAAIMLYEAWRQLN 150 >gi|296125362|ref|YP_003632614.1| RNA methyltransferase, TrmH family, group 3 [Brachyspira murdochii DSM 12563] gi|296017178|gb|ADG70415.1| RNA methyltransferase, TrmH family, group 3 [Brachyspira murdochii DSM 12563] Length = 237 Score = 88.7 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 101/230 (43%), Gaps = 4/230 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK-E 108 F+ + ++ A++ + + + + +K V ++KIVGK Sbjct: 2 FITSKNAITEAISKNLVETLYIKFPISKREKDIIKLAEKKKVLIKNVDKNEMEKIVGKVY 61 Query: 109 AVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 ++ + + L +++ L+ +LD + D HN+GAI+R+A F GII Sbjct: 62 SIAADIKENAEIGIENFLQKALEKKDNPLIFILDSITDVHNLGAIIRNAYFFGSSGIIIP 121 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 K S + + + ++GA H+P +NL ++ M GF S + + LE Sbjct: 122 KDNSAPINEKVYEISAGAAYHLPISIETNLNRTIELMKDKGFWIYYASEEGETSLEDFKF 181 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 N A+ILG E G+R ++ + ++ +LNVS A+AV Y Sbjct: 182 NTPTAIILGNEHSGVRDILKKNSDGSIIINKSNDFDSLNVSAASAVIAYA 231 >gi|224437650|ref|ZP_03658597.1| hypothetical protein HcinC1_06720 [Helicobacter cinaedi CCUG 18818] gi|313144097|ref|ZP_07806290.1| 23S rRNA methyltransferase [Helicobacter cinaedi CCUG 18818] gi|313129128|gb|EFR46745.1| 23S rRNA methyltransferase [Helicobacter cinaedi CCUG 18818] Length = 230 Score = 88.7 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 81/224 (36%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG + A+ I + K L P+K V + + + + Sbjct: 2 IIYGKQPILYAIETCPCSITEFYLAKELPRDLFSQLAKLDK-PIKRVDNKK-AQALSRGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + P + +L ++ L+VL ++D NIG+I R+A A GI+ Sbjct: 60 NHQGILAQIIPPQALSLKELKEKDSLLVLCEISDVGNIGSIFRTAYALGVGGIVICLPSL 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 ++ S + + T+ + + + K Sbjct: 120 SQKAIEGIVRLSSGAFLNMPYGVFTQVFDVLNELKNANFTLVGADMRGQERIEN--PQKW 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E GL + + +M + M +LNV+ A + + Sbjct: 178 ALFLGSESMGLSARLKHKLDTMLSIKMKHHFDSLNVAVATGILI 221 >gi|320182094|gb|EFW56998.1| putative methyltransferase [Shigella boydii ATCC 9905] Length = 345 Score = 88.7 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EHI I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHIQPITGDNIVNVLDDFRQAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|320539497|ref|ZP_08039166.1| putative methyltransferase [Serratia symbiotica str. Tucson] gi|320030622|gb|EFW12632.1| putative methyltransferase [Serratia symbiotica str. Tucson] Length = 360 Score = 88.7 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 87/244 (35%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V + Sbjct: 116 RRQRAEETRVYGENACQALFASRPDAIVRAWFIQSITPRFREALRWMAANRKTYHVVDEE 175 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL----LMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ + L ++ L+ V +PHN+GAI+RS Sbjct: 176 ELVKASGTE-HHGGVCFLIKKRQGLDAQTYLKNPLATDCVLALEEVGNPHNLGAIVRSCA 234 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F +G++ + + ES ++A G EHI I + L G+ + SS Sbjct: 235 HFGVNGVLL-QDPAVLESGAAVRTAEGGAEHIKAINADDFLSVLDIFRQAGYTIVTTSSH 293 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L Q KI L+L E GL + + G + +LNVS A + L Sbjct: 294 KGTALAQAKLPAKIVLVLRQERDGLSDSAWQQGDMSISIGGTGKVDSLNVSVATGILLAD 353 Query: 276 TQNH 279 Sbjct: 354 WWRQ 357 >gi|194432143|ref|ZP_03064432.1| RNA methyltransferase, TrmH family [Shigella dysenteriae 1012] gi|194419672|gb|EDX35752.1| RNA methyltransferase, TrmH family [Shigella dysenteriae 1012] gi|332088093|gb|EGI93218.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella boydii 5216-82] gi|332089180|gb|EGI94287.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella dysenteriae 155-74] Length = 345 Score = 88.7 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EHI I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHIQPITGDNIVNVLDDFRQAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|206577394|ref|YP_002235981.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae 342] gi|206566452|gb|ACI08228.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae 342] Length = 229 Score = 88.7 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ A++R+A A + S + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEV-HAVWPSSRMRTMASAAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + SD + +++G E G+ + Sbjct: 69 SWVQVKTHRTIADAVGHLKGQGMQILATHLSDKAIDFREIDYTRPTCILMGQEKTGITQE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|283787717|ref|YP_003367582.1| tRNA (guanosine-2'-O)-methyltransferase [Citrobacter rodentium ICC168] gi|282951171|emb|CBG90863.1| tRNA (guanosine-2'-O)-methyltransferase [Citrobacter rodentium ICC168] Length = 229 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 58/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASAAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + SD+ + +++G E G+ + Sbjct: 69 SWVQVKTHRTIGDAVSHLKGRGMQVLATHLSDNAVDFREIDYTRPTCILMGQEKTGITQE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|148242334|ref|YP_001227491.1| rRNA methylase [Synechococcus sp. RCC307] gi|147850644|emb|CAK28138.1| Predicted rRNA methylase [Synechococcus sp. RCC307] Length = 152 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 1/147 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + L ++ H+P ++ S+ Sbjct: 4 IVLVEPEIPPNTGNIARTCAATETPLHLVEPLGFEINDRQLKRAGLDYWPHVPLVQHSSW 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + L+ + +G S + + + LI G E KGL P+ Q + + Sbjct: 64 GEFLKHHQHHSGRLLGFSRHASRSYLEIDYRADDWLIFGCETKGLAPEVQANCDDLLLIP 123 Query: 256 MP-GIIKALNVSNAAAVALYITQNHFA 281 M +++LN+S AAAV L+ ++ Sbjct: 124 MTCSAVRSLNLSVAAAVVLFESRRQLI 150 >gi|320031639|gb|EFW13599.1| SpoU rRNA methylase [Coccidioides posadasii str. Silveira] Length = 472 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 60/285 (21%), Positives = 100/285 (35%), Gaps = 54/285 (18%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-------WDANLPHPFPVKTVPPQT 100 + F+YG H V +A+ RKI+ L + +L + VK V + Sbjct: 138 SEFIYGFHPVRSAIRAGRRKIYALYLCERPTNQLSGSGLNSLQKLAVTAGAKVKIVSSEW 197 Query: 101 ---IDKIVGKEAVHQGLALETAPLLSPTLD--------------------------AVRN 131 + ++ + A + Sbjct: 198 SQALSRVCKEVASLPVTNFNVKVAPQSKEEAAVNGTSGLIPLTSLRQDSYDDHRTQHNPR 257 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++LD + DPHN+GAILRSA F D + + R S S V+ KS+SGA EHIP I Sbjct: 258 YPFTLLLDGIVDPHNLGAILRSAYYFGADAVAFSSRNSAPLSPVVMKSSSGAAEHIPLIS 317 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-------------DKIALILGAEGK 238 I + + G++ + + + KN L+LG EG Sbjct: 318 IHDTVSFIDASRRNGWRFFAAEPPASVAPDSKNKNIVSSKNLPNELQNYPCVLMLGNEGD 377 Query: 239 GLRPKTQETATSMAHLH-----MPGIIKALNVSNAAAVALYITQN 278 GL + + A + + + + +LNV+ A+ + Sbjct: 378 GLSKELKSKADASVVVDCPRKHIVDEVDSLNVAVASGILCEAFMR 422 >gi|218559502|ref|YP_002392415.1| methyltransferase [Escherichia coli S88] gi|218366271|emb|CAR04018.1| putative methyltransferase [Escherichia coli S88] gi|294490617|gb|ADE89373.1| RNA methyltransferase, TrmH family [Escherichia coli IHE3034] gi|307625870|gb|ADN70174.1| putative methyltransferase [Escherichia coli UM146] gi|315287997|gb|EFU47399.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli MS 110-3] gi|323949235|gb|EGB45126.1| SpoU rRNA methylase [Escherichia coli H252] gi|323955817|gb|EGB51575.1| SpoU rRNA methylase [Escherichia coli H263] Length = 345 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G E++ I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEYVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|91211908|ref|YP_541894.1| putative methyltransferase [Escherichia coli UTI89] gi|237705091|ref|ZP_04535572.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|91073482|gb|ABE08363.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli UTI89] gi|226901457|gb|EEH87716.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] Length = 370 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 126 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 185 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 186 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 244 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G E++ I N+ + L G+ + SS+ Sbjct: 245 HFGVKGVVV-QDAALLESGAAIRTAEGGAEYVQPITGDNIVNVLDDFRQAGYTVVTTSSE 303 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 304 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 363 Query: 276 TQNH 279 Sbjct: 364 WWRQ 367 >gi|332344456|gb|AEE57790.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli UMNK88] Length = 345 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|331678578|ref|ZP_08379253.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli H591] gi|331075038|gb|EGI46358.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli H591] Length = 349 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 105 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 164 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 165 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 223 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 224 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 282 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 283 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 342 Query: 276 TQNH 279 Sbjct: 343 WWRQ 346 >gi|331674030|ref|ZP_08374793.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA280] gi|331069303|gb|EGI40695.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA280] Length = 349 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 105 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 164 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 165 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 223 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 224 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 282 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 283 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 342 Query: 276 TQNH 279 Sbjct: 343 WWRQ 346 >gi|331654044|ref|ZP_08355045.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli M718] gi|331048893|gb|EGI20969.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli M718] Length = 349 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 105 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 164 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 165 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 223 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 224 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 282 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 283 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 342 Query: 276 TQNH 279 Sbjct: 343 WWRQ 346 >gi|331648328|ref|ZP_08349417.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli M605] gi|331042877|gb|EGI15018.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli M605] Length = 349 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 105 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 164 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 165 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 223 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 224 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 282 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 283 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 342 Query: 276 TQNH 279 Sbjct: 343 WWRQ 346 >gi|331643205|ref|ZP_08344340.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli H736] gi|332278261|ref|ZP_08390674.1| conserved hypothetical protein [Shigella sp. D9] gi|331040003|gb|EGI12223.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli H736] gi|332100613|gb|EGJ03959.1| conserved hypothetical protein [Shigella sp. D9] Length = 349 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 105 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 164 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 165 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 223 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 224 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 282 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 283 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 342 Query: 276 TQNH 279 Sbjct: 343 WWRQ 346 >gi|323156241|gb|EFZ42400.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli EPECa14] Length = 247 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 3 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 62 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 63 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 121 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 122 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 180 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 181 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 240 Query: 276 TQNH 279 Sbjct: 241 WWRQ 244 >gi|301024868|ref|ZP_07188505.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 69-1] gi|300396399|gb|EFJ79937.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 69-1] Length = 345 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|215487924|ref|YP_002330355.1| putative methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|218690697|ref|YP_002398909.1| putative methyltransferase [Escherichia coli ED1a] gi|218701096|ref|YP_002408725.1| putative methyltransferase [Escherichia coli IAI39] gi|218706086|ref|YP_002413605.1| putative methyltransferase [Escherichia coli UMN026] gi|293406024|ref|ZP_06650016.1| methyltransferase [Escherichia coli FVEC1412] gi|298381824|ref|ZP_06991423.1| methyltransferase [Escherichia coli FVEC1302] gi|300895649|ref|ZP_07114249.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 198-1] gi|312965497|ref|ZP_07779729.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 2362-75] gi|331684231|ref|ZP_08384827.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli H299] gi|215265996|emb|CAS10406.1| predicted methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|218371082|emb|CAR18911.1| putative methyltransferase [Escherichia coli IAI39] gi|218428261|emb|CAR09180.2| putative methyltransferase [Escherichia coli ED1a] gi|218433183|emb|CAR14081.1| putative methyltransferase [Escherichia coli UMN026] gi|284922533|emb|CBG35620.1| putative RNA methyltransferase [Escherichia coli 042] gi|291428232|gb|EFF01259.1| methyltransferase [Escherichia coli FVEC1412] gi|298279266|gb|EFI20780.1| methyltransferase [Escherichia coli FVEC1302] gi|300360409|gb|EFJ76279.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 198-1] gi|312289917|gb|EFR17805.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 2362-75] gi|323188304|gb|EFZ73596.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli RN587/1] gi|331079183|gb|EGI50385.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli H299] Length = 345 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|213855785|ref|ZP_03384025.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 179 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +++G E G+ + + A + M G++++LNVS A+A+ LY Q Sbjct: 60 YTRPTCILMGQEKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 115 >gi|157156261|ref|YP_001463905.1| putative methyltransferase [Escherichia coli E24377A] gi|191167962|ref|ZP_03029764.1| RNA methyltransferase, TrmH family [Escherichia coli B7A] gi|218696209|ref|YP_002403876.1| putative methyltransferase [Escherichia coli 55989] gi|300820739|ref|ZP_07100889.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 119-7] gi|300927042|ref|ZP_07142794.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 182-1] gi|301330317|ref|ZP_07222964.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 78-1] gi|307313848|ref|ZP_07593464.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli W] gi|309794365|ref|ZP_07688788.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 145-7] gi|331669332|ref|ZP_08370180.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA271] gi|157078291|gb|ABV17999.1| RNA methyltransferase, TrmH family [Escherichia coli E24377A] gi|190901969|gb|EDV61716.1| RNA methyltransferase, TrmH family [Escherichia coli B7A] gi|218352941|emb|CAU98740.1| putative methyltransferase [Escherichia coli 55989] gi|300416926|gb|EFK00237.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 182-1] gi|300526492|gb|EFK47561.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 119-7] gi|300843651|gb|EFK71411.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 78-1] gi|306906349|gb|EFN36864.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli W] gi|308121821|gb|EFO59083.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 145-7] gi|315061900|gb|ADT76227.1| predicted methyltransferase [Escherichia coli W] gi|323377519|gb|ADX49787.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli KO11] gi|324118209|gb|EGC12105.1| SpoU rRNA methylase [Escherichia coli E1167] gi|331064526|gb|EGI36437.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA271] Length = 345 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|110642743|ref|YP_670473.1| putative methyltransferase [Escherichia coli 536] gi|191174012|ref|ZP_03035529.1| RNA methyltransferase, TrmH family [Escherichia coli F11] gi|227887617|ref|ZP_04005422.1| methyltransferase [Escherichia coli 83972] gi|300935715|ref|ZP_07150684.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 21-1] gi|300974114|ref|ZP_07172464.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 200-1] gi|301047220|ref|ZP_07194312.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 185-1] gi|306814355|ref|ZP_07448517.1| putative methyltransferase [Escherichia coli NC101] gi|110344335|gb|ABG70572.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli 536] gi|190905703|gb|EDV65325.1| RNA methyltransferase, TrmH family [Escherichia coli F11] gi|227835967|gb|EEJ46433.1| methyltransferase [Escherichia coli 83972] gi|281179630|dbj|BAI55960.1| putative RNA methyltransferase [Escherichia coli SE15] gi|300300897|gb|EFJ57282.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 185-1] gi|300308937|gb|EFJ63457.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 200-1] gi|300459104|gb|EFK22597.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 21-1] gi|305851749|gb|EFM52201.1| putative methyltransferase [Escherichia coli NC101] gi|307554600|gb|ADN47375.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli ABU 83972] gi|320196417|gb|EFW71041.1| putative methyltransferase [Escherichia coli WV_060327] gi|324014374|gb|EGB83593.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli MS 60-1] gi|330912349|gb|EGH40859.1| hypothetical tRNA/rRNA methyltransferase yfiF [Escherichia coli AA86] Length = 345 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|30063982|ref|NP_838153.1| putative methyltransferase [Shigella flexneri 2a str. 2457T] gi|30042238|gb|AAP17963.1| hypothetical protein S2816 [Shigella flexneri 2a str. 2457T] gi|281601993|gb|ADA74977.1| putative rRNA methylase [Shigella flexneri 2002017] gi|313648260|gb|EFS12704.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 2a str. 2457T] gi|332753991|gb|EGJ84365.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 4343-70] gi|332755829|gb|EGJ86187.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 2747-71] gi|332761975|gb|EGJ92248.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-671] gi|332766583|gb|EGJ96788.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 2930-71] gi|333000441|gb|EGK20023.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri VA-6] gi|333000847|gb|EGK20419.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-218] gi|333001674|gb|EGK21241.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-272] gi|333015950|gb|EGK35285.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-227] gi|333016824|gb|EGK36150.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-304] Length = 345 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVIQAGAQDCVLALENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|15832701|ref|NP_311474.1| methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|16130506|ref|NP_417076.1| predicted methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|74313144|ref|YP_311563.1| putative methyltransferase [Shigella sonnei Ss046] gi|82778009|ref|YP_404358.1| putative methyltransferase [Shigella dysenteriae Sd197] gi|89109387|ref|AP_003167.1| predicted methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|168752077|ref|ZP_02777099.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4113] gi|168757754|ref|ZP_02782761.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4401] gi|168765025|ref|ZP_02790032.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4501] gi|168768686|ref|ZP_02793693.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4486] gi|168773490|ref|ZP_02798497.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4196] gi|168778560|ref|ZP_02803567.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4076] gi|168790382|ref|ZP_02815389.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC869] gi|168801700|ref|ZP_02826707.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC508] gi|170019136|ref|YP_001724090.1| putative methyltransferase [Escherichia coli ATCC 8739] gi|170082190|ref|YP_001731510.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170683534|ref|YP_001744770.1| putative methyltransferase [Escherichia coli SMS-3-5] gi|187730537|ref|YP_001881368.1| putative methyltransferase [Shigella boydii CDC 3083-94] gi|188494800|ref|ZP_03002070.1| RNA methyltransferase, TrmH family [Escherichia coli 53638] gi|193064052|ref|ZP_03045137.1| RNA methyltransferase, TrmH family [Escherichia coli E22] gi|193068401|ref|ZP_03049364.1| RNA methyltransferase, TrmH family [Escherichia coli E110019] gi|194429284|ref|ZP_03061811.1| RNA methyltransferase, TrmH family [Escherichia coli B171] gi|194437701|ref|ZP_03069797.1| RNA methyltransferase, TrmH family [Escherichia coli 101-1] gi|195936729|ref|ZP_03082111.1| putative methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208808899|ref|ZP_03251236.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4206] gi|208814513|ref|ZP_03255842.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4045] gi|208821234|ref|ZP_03261554.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4042] gi|209397290|ref|YP_002272056.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4115] gi|209920061|ref|YP_002294145.1| putative methyltransferase [Escherichia coli SE11] gi|217327232|ref|ZP_03443315.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. TW14588] gi|218555164|ref|YP_002388077.1| putative methyltransferase [Escherichia coli IAI1] gi|238901746|ref|YP_002927542.1| putative methyltransferase [Escherichia coli BW2952] gi|253772519|ref|YP_003035350.1| methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162556|ref|YP_003045664.1| putative methyltransferase [Escherichia coli B str. REL606] gi|254794532|ref|YP_003079369.1| putative methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|256017269|ref|ZP_05431134.1| putative methyltransferase [Shigella sp. D9] gi|256021732|ref|ZP_05435597.1| putative methyltransferase [Escherichia sp. 4_1_40B] gi|260845267|ref|YP_003223045.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260856675|ref|YP_003230566.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368] gi|260869267|ref|YP_003235669.1| putative methyltransferase [Escherichia coli O111:H- str. 11128] gi|261222983|ref|ZP_05937264.1| predicted methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261259467|ref|ZP_05952000.1| putative methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291283857|ref|YP_003500675.1| rRNA methylase [Escherichia coli O55:H7 str. CB9615] gi|293410997|ref|ZP_06654573.1| RNA methyltransferase [Escherichia coli B354] gi|293446936|ref|ZP_06663358.1| methyltransferase [Escherichia coli B088] gi|297517286|ref|ZP_06935672.1| putative methyltransferase [Escherichia coli OP50] gi|300817642|ref|ZP_07097857.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 107-1] gi|300904235|ref|ZP_07122094.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 84-1] gi|300920749|ref|ZP_07137155.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 115-1] gi|300927708|ref|ZP_07143276.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 187-1] gi|300951699|ref|ZP_07165519.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 116-1] gi|300958777|ref|ZP_07170890.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 175-1] gi|301021932|ref|ZP_07185891.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 196-1] gi|301302948|ref|ZP_07209076.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 124-1] gi|301648346|ref|ZP_07248086.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 146-1] gi|307139219|ref|ZP_07498575.1| putative methyltransferase [Escherichia coli H736] gi|309784597|ref|ZP_07679232.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella dysenteriae 1617] gi|312973173|ref|ZP_07787345.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1827-70] gi|84027943|sp|P0AGJ6|YFIF_ECO57 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YfiF gi|84027944|sp|P0AGJ5|YFIF_ECOLI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YfiF gi|1788935|gb|AAC75634.1| predicted methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|13362918|dbj|BAB36870.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|73856621|gb|AAZ89328.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81242157|gb|ABB62867.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|85675469|dbj|BAA16467.2| predicted methyltransferase [Escherichia coli str. K12 substr. W3110] gi|169754064|gb|ACA76763.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli ATCC 8739] gi|169890025|gb|ACB03732.1| predicted methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170521252|gb|ACB19430.1| RNA methyltransferase, TrmH family [Escherichia coli SMS-3-5] gi|187427529|gb|ACD06803.1| RNA methyltransferase, TrmH family [Shigella boydii CDC 3083-94] gi|187770634|gb|EDU34478.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4196] gi|188013998|gb|EDU52120.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4113] gi|188489999|gb|EDU65102.1| RNA methyltransferase, TrmH family [Escherichia coli 53638] gi|189003528|gb|EDU72514.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4076] gi|189355309|gb|EDU73728.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4401] gi|189362321|gb|EDU80740.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4486] gi|189365089|gb|EDU83505.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4501] gi|189370139|gb|EDU88555.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC869] gi|189376184|gb|EDU94600.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC508] gi|192929287|gb|EDV82896.1| RNA methyltransferase, TrmH family [Escherichia coli E22] gi|192958353|gb|EDV88793.1| RNA methyltransferase, TrmH family [Escherichia coli E110019] gi|194412692|gb|EDX28987.1| RNA methyltransferase, TrmH family [Escherichia coli B171] gi|194423507|gb|EDX39498.1| RNA methyltransferase, TrmH family [Escherichia coli 101-1] gi|208728700|gb|EDZ78301.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4206] gi|208735790|gb|EDZ84477.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4045] gi|208741357|gb|EDZ89039.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4042] gi|209158690|gb|ACI36123.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4115] gi|209762748|gb|ACI79686.1| hypothetical protein ECs3447 [Escherichia coli] gi|209762750|gb|ACI79687.1| hypothetical protein ECs3447 [Escherichia coli] gi|209762752|gb|ACI79688.1| hypothetical protein ECs3447 [Escherichia coli] gi|209762754|gb|ACI79689.1| hypothetical protein ECs3447 [Escherichia coli] gi|209762756|gb|ACI79690.1| hypothetical protein ECs3447 [Escherichia coli] gi|209913320|dbj|BAG78394.1| putative RNA methyltransferase [Escherichia coli SE11] gi|217319599|gb|EEC28024.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. TW14588] gi|218361932|emb|CAQ99533.1| putative methyltransferase [Escherichia coli IAI1] gi|238862664|gb|ACR64662.1| predicted methyltransferase [Escherichia coli BW2952] gi|242378181|emb|CAQ32956.1| predicted methyltransferase [Escherichia coli BL21(DE3)] gi|253323563|gb|ACT28165.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974457|gb|ACT40128.1| predicted methyltransferase [Escherichia coli B str. REL606] gi|253978624|gb|ACT44294.1| predicted methyltransferase [Escherichia coli BL21(DE3)] gi|254593932|gb|ACT73293.1| predicted methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|257755324|dbj|BAI26826.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257760414|dbj|BAI31911.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009] gi|257765623|dbj|BAI37118.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128] gi|260448339|gb|ACX38761.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli DH1] gi|290763730|gb|ADD57691.1| rRNA methylase [Escherichia coli O55:H7 str. CB9615] gi|291323766|gb|EFE63194.1| methyltransferase [Escherichia coli B088] gi|291471465|gb|EFF13949.1| RNA methyltransferase [Escherichia coli B354] gi|299881399|gb|EFI89610.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 196-1] gi|300314585|gb|EFJ64369.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 175-1] gi|300403768|gb|EFJ87306.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 84-1] gi|300412320|gb|EFJ95630.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 115-1] gi|300449061|gb|EFK12681.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 116-1] gi|300464261|gb|EFK27754.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 187-1] gi|300529630|gb|EFK50692.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 107-1] gi|300841883|gb|EFK69643.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 124-1] gi|301073622|gb|EFK88428.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 146-1] gi|308927494|gb|EFP72966.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella dysenteriae 1617] gi|309702967|emb|CBJ02298.1| putative RNA methyltransferase [Escherichia coli ETEC H10407] gi|310331768|gb|EFP99003.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1827-70] gi|315137205|dbj|BAJ44364.1| rRNA methylase [Escherichia coli DH1] gi|315256609|gb|EFU36577.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli MS 85-1] gi|315615843|gb|EFU96475.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 3431] gi|320176115|gb|EFW51182.1| putative methyltransferase [Shigella dysenteriae CDC 74-1112] gi|320188922|gb|EFW63581.1| putative methyltransferase [Escherichia coli O157:H7 str. EC1212] gi|320200145|gb|EFW74734.1| putative methyltransferase [Escherichia coli EC4100B] gi|320640830|gb|EFX10324.1| putative methyltransferase [Escherichia coli O157:H7 str. G5101] gi|320646176|gb|EFX15116.1| putative methyltransferase [Escherichia coli O157:H- str. 493-89] gi|320651471|gb|EFX19867.1| putative methyltransferase [Escherichia coli O157:H- str. H 2687] gi|320657073|gb|EFX24892.1| putative methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662738|gb|EFX30077.1| putative methyltransferase [Escherichia coli O55:H7 str. USDA 5905] gi|323159154|gb|EFZ45145.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli E128010] gi|323167780|gb|EFZ53475.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella sonnei 53G] gi|323173100|gb|EFZ58731.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli LT-68] gi|323177288|gb|EFZ62876.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1180] gi|323184539|gb|EFZ69913.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1357] gi|323936321|gb|EGB32612.1| SpoU rRNA methylase [Escherichia coli E1520] gi|323941156|gb|EGB37341.1| SpoU rRNA methylase [Escherichia coli E482] gi|323944581|gb|EGB40650.1| SpoU rRNA methylase [Escherichia coli H120] gi|323961196|gb|EGB56809.1| SpoU rRNA methylase [Escherichia coli H489] gi|323971092|gb|EGB66339.1| SpoU rRNA methylase [Escherichia coli TA007] gi|324020040|gb|EGB89259.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli MS 117-3] gi|326340387|gb|EGD64191.1| putative methyltransferase [Escherichia coli O157:H7 str. 1125] gi|326345070|gb|EGD68814.1| putative methyltransferase [Escherichia coli O157:H7 str. 1044] Length = 345 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|256832412|ref|YP_003161139.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM 20603] gi|256685943|gb|ACV08836.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM 20603] Length = 282 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 60/289 (20%), Positives = 105/289 (36%), Gaps = 30/289 (10%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E I S D +Y + +SR + +S A+ Sbjct: 3 EPITSTTDPRLE-------EYTNLTDMRLRSRFEPERGVYIAESATVISRAITAGHAP-R 54 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 L + + ++ + P P ++++ G VH+G P+LD Sbjct: 55 SFLMSPKWVEQMTPLMDQFPNIPAYVGAPGLLEELTGF-NVHRGALASMHRPALPSLDDF 113 Query: 130 RNSQL------------------LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 + VLD + D N+GAI+RS A DGII + Sbjct: 114 MTRITRTHQPNALGIDGQSARSRIAVLDGIIDHTNLGAIIRSCAALGVDGIIVNHTSADP 173 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG---LSSDSKKPLEQEIKNDK 228 + + G + +P+ R +NL + L +H + T + +DK Sbjct: 174 LYRRAIRVSMGTVFQVPWTRANNLIEVLDLLHEAHYTTAALALSDNAITLDQFNAENHDK 233 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G EG GL +T T + + + M G + +LNV+ +A+ Y T+ Sbjct: 234 VAFLFGNEGHGLSDRTLATVSRVVTIPMAGDVDSLNVAATSALVFYATR 282 >gi|40715982|gb|AAR88654.1| rRNA methylase-like protein [Viscum album] Length = 368 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 60/154 (38%), Gaps = 1/154 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R+ + +V++ D NI A+ RSA A + S + GA + + Sbjct: 167 NRSYSVWLVVEGATDFGNISAVFRSADALGLQSVHVISCGSSKRYRENRHVSMGAEKWLD 226 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQET 247 + + + + S G++ + +S + A++ G E +G+ + Sbjct: 227 IELWDSTQECFRNLKSRGYRIVTAHLESDAVSIYNMDWTSPTAIVTGNEKRGISEEALGL 286 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M G++ +LNVS AA + ++ Sbjct: 287 SDLHCSIPMRGMVDSLNVSVAAGILMHHAVRDRT 320 >gi|21220051|ref|NP_625830.1| rRNA methylase [Streptomyces coelicolor A3(2)] gi|256788841|ref|ZP_05527272.1| rRNA methylase [Streptomyces lividans TK24] gi|289772734|ref|ZP_06532112.1| rRNA methylase [Streptomyces lividans TK24] gi|7106669|emb|CAB76071.1| putative rRNA methylase [Streptomyces coelicolor A3(2)] gi|289702933|gb|EFD70362.1| rRNA methylase [Streptomyces lividans TK24] Length = 272 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 92/239 (38%), Gaps = 5/239 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + R G + A LL+ K D Sbjct: 17 DYTGLTDVELRRRREPAEGLFIAEGEKVIRRAGEAGYAMRSMLLSAK--WVDAMRDIIDA 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P PV V P +++ G LA L + ++ ++V++ VND NIG Sbjct: 75 APAPVYVVDPALAERVTGYHVHRGALASMQRKPLDTAAGLLTTARRVVVMESVNDHTNIG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI RSA A D I+ + + K + GA+ +PY R+ L + GF Sbjct: 135 AIFRSAAALGMDAILLSPDCADPLYRRSVKVSMGAVFSVPYARLDTWPAGLAAVGEAGFT 194 Query: 209 TIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ D + + D++AL+LGAEG GL + + + + M + +LN Sbjct: 195 LLALTPDERAEPLDAVAPHRMDRVALMLGAEGSGLTRRALAASDTWVRIPMSHGVDSLN 253 >gi|254786166|ref|YP_003073595.1| tRNA guanosine-2'-O-methyltransferase [Teredinibacter turnerae T7901] gi|237686905|gb|ACR14169.1| tRNA guanosine-2'-O-methyltransferase [Teredinibacter turnerae T7901] Length = 228 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L ++ D V+ N+ AI R+ A D I ++ +++ Sbjct: 16 RQPDLTVITDEVHKGRNLSAITRTCDAVGIDTIHCVMPEDGYQTYNGTSASAE-KWVAVQ 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S D+ AL+LGAE KG+ P+ Sbjct: 75 HHSSISAPVNDLKREGFQLVAANLGDNTLDYRNVDYTKPTALVLGAEVKGVSPEAAAAVD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++ NVS AAA+ L Q+ Sbjct: 135 YNVTVPMVGMVESFNVSVAAAIILMEAQHQR 165 >gi|187931908|ref|YP_001891893.1| rRNA methyltransferase [Francisella tularensis subsp. mediasiatica FSC147] gi|254369390|ref|ZP_04985402.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|157122340|gb|EDO66480.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|187712817|gb|ACD31114.1| rRNA methyltransferase [Francisella tularensis subsp. mediasiatica FSC147] Length = 250 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 89/259 (34%), Gaps = 15/259 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD 84 + + YK+++ + S+ + + + G+ AL P ++I +L T+ A Sbjct: 5 SQKLYKEIKKLH-SSQGRKKSQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPL 63 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + + + + + L + ++VLD + DP Sbjct: 64 NKK------YIITEKDFEALSQTQNPQGVL---ILAEKPKLEQLSFDDDFILVLDRIQDP 114 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIG ILR+A+A +I + ++ GA + + I+NL + Sbjct: 115 GNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSLKFGYITNLAELKNIAKL 174 Query: 205 WGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + L+ G E G+ + + I++L Sbjct: 175 QQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIESL 231 Query: 264 NVSNAAAVALYITQNHFAK 282 NV+ AA + L+ + Sbjct: 232 NVAQAATIYLFEGLRQRLR 250 >gi|332084466|gb|EGI89661.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae 155-74] Length = 206 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 1/143 (0%) Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 ++ V+ PHN+ AI+R+A A + + + +A + Sbjct: 1 MEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGNRMRTMASAAAGSNSWVQVKTHRTIGDA 59 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 SD+ + +++G E G+ + A + M Sbjct: 60 VAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMI 119 Query: 258 GIIKALNVSNAAAVALYITQNHF 280 G++++LNVS A+A+ LY Q Sbjct: 120 GMVQSLNVSVASALILYEAQRQR 142 >gi|33239873|ref|NP_874815.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237399|gb|AAP99467.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 229 Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 1/155 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R S L ++ + V PHN+ AILR+ A + S + S + Sbjct: 16 NRRMSNLTVLAEEVEKPHNLSAILRTCDAIGILQAHAVFKQSKIPTFNSTAQGSQKWVKL 75 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + K + L+ K A +LGAE GL Sbjct: 76 VKHPNIEVAIKSLKGEGFKIYGTNLNEQ-AKDYRLFDYKGPTAFVLGAEKWGLSQLATSL 134 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G++++LNVS A+A L+ K Sbjct: 135 VDESIFIPMRGMVQSLNVSVASATLLFEALRQREK 169 >gi|226327607|ref|ZP_03803125.1| hypothetical protein PROPEN_01478 [Proteus penneri ATCC 35198] gi|225204133|gb|EEG86487.1| hypothetical protein PROPEN_01478 [Proteus penneri ATCC 35198] Length = 229 Score = 88.4 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R L + L+ V+ HN+ A++R+A A I +++ +A Sbjct: 4 MRQPDLTICLEEVHKSHNVAAVIRTADAVGIPKI-HAIWPEEKMRMLVSPAAGSNSWVNV 62 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + SD + +I+G E G+ A Sbjct: 63 ETHPTITDAVGAFRTQGMQVLATHLSDKAVDFREIDYTRPTCIIMGQEKTGISQDAIALA 122 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 123 DQDIIVPMMGMVQSLNVSVASALILYEAQRQR 154 >gi|153833892|ref|ZP_01986559.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi HY01] gi|269959394|ref|ZP_06173777.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|148869730|gb|EDL68707.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi HY01] gi|269835831|gb|EEZ89907.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 227 Score = 88.4 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 2/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A + + + SA Sbjct: 16 RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVHAI--WPDKMRTLTHTSAGARNWVEVD 73 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S T + + SD+ + A+ILG+E G + ++ A Sbjct: 74 THDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLAD 133 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+AV LY Q Sbjct: 134 QDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164 >gi|290961783|ref|YP_003492965.1| rRNA methylase [Streptomyces scabiei 87.22] gi|260651309|emb|CBG74431.1| putative rRNA methylase [Streptomyces scabiei 87.22] Length = 272 Score = 88.4 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 94/238 (39%), Gaps = 5/238 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y + + R G + A LL+ K D LP Sbjct: 18 YTGLTDVELRRRREPAEGLFIAEGEKVIRRAKEAGYEMRSMLLSAKWVDVMRDVIDELPA 77 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 PV V P+ +++ G LA L + ++ +++++ VND NIGA Sbjct: 78 --PVYAVSPELAEQVTGYHVHRGALASMQRKPLPTADQLLGAARRVVIMESVNDHTNIGA 135 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ + + K + GA+ +PY R+ L + GF Sbjct: 136 IFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKGLDAVRDAGFTL 195 Query: 210 IGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ D K E + D++AL+LGAEG GL K +A + M + +LN Sbjct: 196 LALTPDEKAKSLDETAPHRMDRVALMLGAEGDGLSTKALMSADEWVRIPMAHGVDSLN 253 >gi|90407844|ref|ZP_01216020.1| putative tRNA methyltransferase [Psychromonas sp. CNPT3] gi|90311019|gb|EAS39128.1| putative tRNA methyltransferase [Psychromonas sp. CNPT3] Length = 228 Score = 88.4 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R +L ++L+ V+ HN+ AI+R+A A + + T+ ++ + + S I Sbjct: 14 NHRQPELTVLLEDVHKSHNLAAIVRTADAVGVNDVHATRETKTTKVCGVTATGSQNWVKI 73 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 A + L SD+ + A+++G E G+ + Sbjct: 74 HTHENIEDAIAALRAQGMQIIATNL-SDTAIDFREVDYTKPTAILMGQEKTGISAQALAL 132 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G+ ++LNVS A+A+ LY Q Sbjct: 133 ADQDVIIPMLGMCQSLNVSVASALILYEAQRQR 165 >gi|313647474|gb|EFS11924.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri 2a str. 2457T] gi|320179989|gb|EFW54931.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii ATCC 9905] gi|332084833|gb|EGI90016.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella boydii 5216-82] gi|332089513|gb|EGI94617.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella boydii 3594-74] gi|332749893|gb|EGJ80305.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-671] gi|332750609|gb|EGJ81017.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri 4343-70] gi|332997445|gb|EGK17061.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-218] gi|333013287|gb|EGK32659.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-227] Length = 206 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +++G E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 87 YTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 142 >gi|312882902|ref|ZP_07742634.1| tRNA guanosine-2'-O-methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369421|gb|EFP96941.1| tRNA guanosine-2'-O-methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] Length = 227 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 2/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A I + + SA Sbjct: 16 RQADLTLCLEEVHKPNNVSAVIRTADATGLHKIHAV--WPNEMRTLSHTSAGARNWVDVE 73 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S Q + S + A+ILG+E G + ++ + Sbjct: 74 THDSIDEAVCQLKEQDMQVLVTNLSPTAVDFRDIDYTKPTAIILGSEKTGASERAKQLSD 133 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+AV LY Q Sbjct: 134 QDIIVPMVGMVQSLNVSVASAVVLYEAQRQR 164 >gi|315618645|gb|EFU99231.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 3431] gi|320193842|gb|EFW68475.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli WV_060327] Length = 206 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +++G E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 87 YTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 142 >gi|260774740|ref|ZP_05883643.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio coralliilyticus ATCC BAA-450] gi|260609302|gb|EEX35454.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio coralliilyticus ATCC BAA-450] Length = 227 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 2/147 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L L+ V+ P+N+ A++R+A A I + + SA S Sbjct: 20 LTFCLEEVHKPNNVSAVIRTADATGIHKIHAV--WPNDMRTLSHTSAGARNWVEVETHDS 77 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + SD+ + A+ILG+E G + ++ A Sbjct: 78 IGKAVAELKDQGMQILVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEEAKQLADQDII 137 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+AV +Y Q Sbjct: 138 IPMIGMVQSLNVSVASAVIMYEAQRQR 164 >gi|33860979|ref|NP_892540.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639711|emb|CAE18881.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 223 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 1/154 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R L ++++ VN PHN+ AILR+ A ++ S + Sbjct: 16 NCRMRNLTVLVEAVNKPHNLSAILRTCDAAGVFEANFISEKDKVKTFNSTAQGSQKWVKL 75 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + K + L+ ++ +LGAE GL + Sbjct: 76 NNHETTISAVSELKKKGFKLYGTTLNER-STDYRNFDYSENTCFVLGAEKWGLSDQLISK 134 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G++++LNVS A ++ L+ Sbjct: 135 VDESIFIPMSGMVQSLNVSVATSILLFEAIRQRK 168 >gi|156972948|ref|YP_001443855.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi ATCC BAA-1116] gi|156524542|gb|ABU69628.1| hypothetical protein VIBHAR_00626 [Vibrio harveyi ATCC BAA-1116] Length = 227 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 2/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A + + + SA Sbjct: 16 RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVHAI--WPDKMRTLTHTSAGARNWVEVD 73 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S T + + SD+ + A+ILG+E G + ++ A Sbjct: 74 THDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLAD 133 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+AV LY Q Sbjct: 134 QDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164 >gi|257146522|emb|CAX30805.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont of Pentastiridius sp.] Length = 239 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R L + L++V+ PHNI A++R+A A I S ++ A +A Sbjct: 15 MRQPDLTVCLENVHKPHNISAVIRTADAVGIPQI-HAIWCKNSSKSLSAAAAGSNHWVKV 73 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + ++ Q +ILG E + + A Sbjct: 74 KTHATIENAISTCKAVGMQILAAYLNNQAIDFRQIDYTQPTCIILGQERASISKQALTLA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 H+ M G++++LNVS A+A+ LY Q Sbjct: 134 DHNIHIPMMGMVQSLNVSVASALILYEAQRQR 165 >gi|291326958|ref|ZP_06126486.2| tRNA guanosine-2'-O-methyltransferase [Providencia rettgeri DSM 1131] gi|291312042|gb|EFE52495.1| tRNA guanosine-2'-O-methyltransferase [Providencia rettgeri DSM 1131] Length = 226 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R L + L+ ++ PHN+ AI+RSA A I ++ +A Sbjct: 4 MRQPDLTLCLEEIHKPHNVSAIVRSADAVGIHQI-HAIWPDQQVKLSVSSAAGSNSWVKI 62 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 S S+ + +++G E G+ + A Sbjct: 63 ISHTSTEEAIAHIKSQNMQVLATNLSEHAVDFREIDYTLPTCIMMGQEKTGISQQALALA 122 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 123 DKHIIIPMAGMVQSLNVSVASALILYEAQRQR 154 >gi|253995943|ref|YP_003048007.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8] gi|253982622|gb|ACT47480.1| RNA methyltransferase, TrmH family, group 2 [Methylotenera mobilis JLW8] Length = 154 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R + E L ++ E+ Sbjct: 1 MFHIVLFEPEIPPNTGNIIRLCANTGAQLHLVKPLGFSLEDKQLKRAGLDYHEYANLKVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 N D + I A + G E +GL + + TA Sbjct: 61 ENWEDCKAALAGHRLFAITTKG--STTHSHIQFKAGDAFVFGPETRGLSEEVRNEFTAEH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN+AA+ LY Sbjct: 119 RVRLPMLPNSRSLNLSNSAAILLYEAWRQI 148 >gi|312170608|emb|CBX78871.1| putative RNA methylase [Erwinia amylovora ATCC BAA-2158] Length = 231 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ A++R+A A + +++ +A Sbjct: 16 RQHDLTVCMEQVHKPHNVSAVIRTADAVGVHEV-HAVWPGSRMRTMVSSAAGSNSWVQVK 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S SD + +++G E G+ + + A Sbjct: 75 THRSIADAVTCLKGQNMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITREALDLAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 RDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|259906722|ref|YP_002647078.1| tRNA guanosine-2'-O-methyltransferase [Erwinia pyrifoliae Ep1/96] gi|224962344|emb|CAX53799.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96] gi|283476505|emb|CAY72320.1| putative RNA methylase [Erwinia pyrifoliae DSM 12163] gi|310765945|gb|ADP10895.1| tRNA guanosine-2'-O-methyltransferase [Erwinia sp. Ejp617] Length = 231 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ A++R+A A + +++ +A Sbjct: 16 RQHDLTVCMEQVHKPHNVSAVIRTADAVGVHEV-HAVWPGSRMRTMVSAAAGSNSWVQVK 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S SD + +++G E G+ + + A Sbjct: 75 THRSIAEAVACLKGQNMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITREALDLAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 GDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|188025415|ref|ZP_02958530.2| hypothetical protein PROSTU_00272 [Providencia stuartii ATCC 25827] gi|188023696|gb|EDU61736.1| hypothetical protein PROSTU_00272 [Providencia stuartii ATCC 25827] Length = 226 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R L + L+ V+ PHN+ AI+RSA A I ++ +A Sbjct: 4 MRQPDLTICLEEVHKPHNVSAIVRSADAVGIH-TIHAIWPDQQVKLSVSSAAGSNSWVNV 62 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 S Q + S+ + +++G E KG+ K E A Sbjct: 63 ISHPSTEAAISQLKSQNMQVLVTHLSEQAVDFREIDYTQPTCIMVGQEKKGISAKALELA 122 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 123 DKHIIIPMVGMVQSLNVSVASALILYEAQRQR 154 >gi|163802263|ref|ZP_02196158.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sp. AND4] gi|159174068|gb|EDP58878.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sp. AND4] Length = 227 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 2/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A + + + SA Sbjct: 16 RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVHAI--WPDKMRTLAHTSAGARNWVEVD 73 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S T + + SD+ A+ILG+E G + ++ A Sbjct: 74 THDSIDTAISELKSQGMQVLVTNLSDTAVDFRDIDYTKPTAIILGSEKVGASDRAKKLAD 133 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+AV LY Q Sbjct: 134 QDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164 >gi|303260346|ref|ZP_07346316.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP-BS293] gi|303265125|ref|ZP_07351038.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS397] gi|302638512|gb|EFL68977.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae SP-BS293] gi|302645342|gb|EFL75576.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS397] Length = 212 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 86/219 (39%), Gaps = 10/219 (4%) Query: 58 SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 A+ I ++ A +N +L + V + + + QG+ Sbjct: 3 EEAVQAGVT-IEKIFALENYRDQLATFSQT------VWVSEDILLDLADSQ-TPQGIVAV 54 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 D + L + + V DP N+G I+R+A A G+I + + + S Sbjct: 55 VQKEEVGQADLNQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTL 112 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S G+ H+P R+++ + S + + L++G EG Sbjct: 113 RSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEG 172 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 173 QGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFYL 211 >gi|119475548|ref|ZP_01615901.1| putative RNA-methyltransferase [marine gamma proteobacterium HTCC2143] gi|119451751|gb|EAW32984.1| putative RNA-methyltransferase [marine gamma proteobacterium HTCC2143] Length = 154 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 53/150 (35%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R C I E L ++ + R Sbjct: 1 MFHIALYEPRIAPNTGNIIRLCANNGCHLHIIEPMGFDFEDKKLRRAGLDYSDLAHVTRY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + ++M+ + ++ + +Q L+ G+E GL + +++ A + Sbjct: 61 PDYAVFAEQMNGRRI--LACTTKGSRHYDQMDYQKGDVLLFGSETAGLPAELRDSFPADN 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M ++LN+SN+ A+ Y Sbjct: 119 LLKIPMHPTSRSLNLSNSVAIITYEAWRQL 148 >gi|218680736|ref|ZP_03528633.1| rRNA methylase protein [Rhizobium etli CIAT 894] Length = 189 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 72/182 (39%) Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + I I ++ + + R+ + + LD V DP N+G I+R+A A Sbjct: 1 KVIASITRRDNPQMVVGIFEQRWKPLKDIRPRDGETWVALDRVRDPGNLGTIIRTADAAG 60 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I + S ++ G++ +P R + + + + + Sbjct: 61 ASGVILVGEATDPFSLETVRATMGSVFAVPVARATPEEFIAWRKSAGVSIVATHLAGAVD 120 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + + L++G E GL + A ++A + G +LN++ A AV L+ + Sbjct: 121 YRTIDYRKKPVVLLMGNEQSGLPDQLAREADALARIPQQGRADSLNLAVATAVMLFEARR 180 Query: 279 HF 280 H Sbjct: 181 HL 182 >gi|139436965|ref|ZP_01771125.1| Hypothetical protein COLAER_00098 [Collinsella aerofaciens ATCC 25986] gi|133776612|gb|EBA40432.1| Hypothetical protein COLAER_00098 [Collinsella aerofaciens ATCC 25986] Length = 304 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 91/268 (33%), Gaps = 21/268 (7%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDWDANL 87 Y ++ + Q + A+ + + LL + + L + Sbjct: 21 YVRLTERELRCVLEPQKGIFIAESAKVIERAVRAGYQPLSFLLGERWLDQMMPLFERLVV 80 Query: 88 PHP---FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--------VRNSQLLM 136 PV + ++++ G LA P P + + Sbjct: 81 REGAGPVPVFVASMELMEQLTGFNVTRGALAAFRRPRQIPVDEFLDGVVEAAGERPVRVC 140 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VL+ + D N+GAI RSA A + DGI+ + A+ + G + +P+ RI + Sbjct: 141 VLEGIVDHTNVGAIFRSAAALNVDGILVSPTCCDPLYRRSARVSMGTVFQVPWTRIGSEA 200 Query: 197 DALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKI-------ALILGAEGKGLRPKTQETA 248 + + + +D + A+ +G EG GL KT Sbjct: 201 RVWPHDGLAVLHEAGFSCAAMALTDDSVSLDDPVLQEIDRLAIFMGTEGAGLGAKTIAGC 260 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276 + M + +LNV+ A+AVA + Sbjct: 261 DRAVRIPMAHGVDSLNVAAASAVAFWQL 288 >gi|146309755|ref|YP_001174829.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter sp. 638] gi|145316631|gb|ABP58778.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter sp. 638] Length = 229 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAIVRTADAVGVHEV-HAVWPGNRLRTMASSAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + Q S SD + +++G E G+ + Sbjct: 69 SWVTVKTHPTISEAVAQLKASGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|109112660|ref|XP_001085109.1| PREDICTED: RNA methyltransferase like 1 isoform 2 [Macaca mulatta] Length = 420 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 44/315 (13%), Positives = 90/315 (28%), Gaps = 52/315 (16%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 Y K R + + + + + L G ++ AL + + Sbjct: 92 LRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLITDALKAGAVPKMFFFSRLEY 151 Query: 78 LARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLL 135 L L D VK + +V + + A + P + L Sbjct: 152 LKELPVDKLKGVSLIKVKFEDIKDWSNLVTPQGIMGIFAKPDHVKMAYPKTQLQHSLPLS 211 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++ D++ DP N+G ILRSA C ++ TK + ++ GA +P I Sbjct: 212 LICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDPWEPKVLRAGMGAHFQVPIINNLEW 271 Query: 196 TDALQKMHSWGFQT---------------------------------------------- 209 + Sbjct: 272 ETVPNYLPPDTRVYVADNCGLYAQAQMSNKASDHGWVSNQRLLKFQKYEEEEDVETGASQ 331 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNV 265 L + + + A+++G E G+ ++ + A + + + +LN Sbjct: 332 DWLPDVEVQSYDSDWTEAPAAVVIGGETDGVSVESLQLAESTGGKRLLIPVVPGVDSLNS 391 Query: 266 SNAAAVALYITQNHF 280 + AA++ L+ + Sbjct: 392 AMAASILLFEGKRQL 406 >gi|323449932|gb|EGB05816.1| hypothetical protein AURANDRAFT_72107 [Aureococcus anophagefferens] Length = 1088 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 87/267 (32%), Gaps = 27/267 (10%) Query: 38 QKSRHTSQPE---NLFLYGVHTVSAALNNPSRKIFQLLATKN--ALARLDWDANLPHPFP 92 Q + L G ++V + + + + ++ A + A P Sbjct: 38 QNLKERDVAGRGDLFILEGENSVHNLVQHGRMPLESVCVSERRVAPMKSLIAAVRARGVP 97 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNI 147 V + + +VG LA + +++ + N+ N+ Sbjct: 98 VYALTHEDYSGLVGFNFHRGVLACGRKLPSVAPGELLGALPATGPSTVVLCERTNNLDNV 157 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-----------------I 190 GA+ R+ AF ++ R + + + G IP+ Sbjct: 158 GAVFRNGAAFGAGAVVFDGRSADPYYRKSIRVSGGHALAIPFTRRGSIADVVQAAKASGH 217 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + L S + + + +++A+++GAEG GL + Q A Sbjct: 218 VVCALVTPPTSARSTAVDDAVGAPVPINEWRADDRPERVAVLMGAEGPGLTDEAQRLADV 277 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQ 277 + M + ++NV+ A ++AL+ Sbjct: 278 RLTIPMANAVDSVNVATACSIALHELA 304 >gi|283783144|ref|YP_003373898.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05] gi|283441076|gb|ADB13542.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05] Length = 302 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 50/293 (17%), Positives = 101/293 (34%), Gaps = 43/293 (14%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 + ++H ++RR + S + H + + G +V A+ + + + T Sbjct: 7 IDNTHSERVRR-------LVSLGRAKSH--DLQRFLVEGPQSVREAVRYATDSLCDIYVT 57 Query: 75 KNALA------------RLDWDANLPHPFPVKTVPPQTIDKIVGKE-----AVHQGLALE 117 K+A R L V V P + KI + + Sbjct: 58 KDACEGNEKKSSQFSSLREIVKEALSRSCYVHPVEPSIMQKISADSQGIVAVANSKSLDD 117 Query: 118 TAPLLSPTLDAVRNSQ--------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 L + + V DP N GAI+R A CD ++ Sbjct: 118 IYFSEFKNLQQSAQVKSKNDFKPLRIAACWQVRDPGNAGAIIRVADVAGCDAVVFVDDCV 177 Query: 170 PSESAVLAKSASGALEH---------IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ L +S +G+L H + + + +G I K + Sbjct: 178 SRWNSKLVRSTAGSLFHLPVVQLSVQDWFECAAKSNIRIIAADIYGTDKIKPVPFPKILV 237 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E+ + +A++ G E +GL + + ++ + + G +++N++ +AAV L Sbjct: 238 NSEVISSSLAILFGNEARGLPKEVLQQVDDISIIPIYGKAESMNLATSAAVML 290 >gi|224370833|ref|YP_002604997.1| SpoU [Desulfobacterium autotrophicum HRM2] gi|223693550|gb|ACN16833.1| SpoU [Desulfobacterium autotrophicum HRM2] Length = 291 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 54/158 (34%) Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + + LD + N+G+I RS A +I +AV Sbjct: 119 HKDRTGDRHDRPLLDFHIALDGLRSLFNVGSIFRSCDAAGFSSLILGNTPGRENAAVRKT 178 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + A + + T +++ KP + + L++G E Sbjct: 179 AMGTADWMPHTQTVDLAQTLVDMKAQGYTITAVETAEQSKPYHDNDWHHRGVLVVGNEEY 238 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 G+ + H+ M G +LNV+NAAA+ ++ Sbjct: 239 GISSHVLAVCDQVVHIPMFGRKNSLNVANAAAILMFHI 276 >gi|318040451|ref|ZP_07972407.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0101] Length = 231 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 1/155 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R L +VL+ V+ PHN+ AILR+ A + S + Sbjct: 16 NRRMGDLTVVLEAVDKPHNLSAILRTCDAVGVLEAHVVSLPGRPRTFNKTAKGSQKWVPL 75 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 K + LS D++ + + ++GAE G+ + Sbjct: 76 HPHPSIETCLNGLKEKGFRIYGTHLSVDARDYRDCD-FTGPSCFLMGAEKWGMSDEALAM 134 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G++++LNVS AAA L+ + Sbjct: 135 VDQPLFIPMTGMVQSLNVSVAAATLLFEALRQRER 169 >gi|86160595|ref|YP_467380.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans 2CP-C] gi|85777106|gb|ABC83943.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans 2CP-C] Length = 225 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 54/152 (35%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L +V++ DP N+ A+LR+ AF + + S + Sbjct: 23 NRTRTLTVVMEAFCDPQNVNAVLRTCEAFGIQTLHAVEGPMKPYDRNKKISQNADKWLDV 82 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 S + P+ K+AL+ G E +G+ + A Sbjct: 83 RRWSSTAECLAHLRSEGFAIYATHLGERSTPMAGLSFAGKVALVFGNEQRGVSEEALAVA 142 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G +++LNVS AAA++L Sbjct: 143 DACYAIPMRGFVQSLNVSVAAAISLAHAVERR 174 >gi|119472552|ref|ZP_01614600.1| RNA methyltransferase, TrmH family protein [Alteromonadales bacterium TW-7] gi|119444876|gb|EAW26176.1| RNA methyltransferase, TrmH family protein [Alteromonadales bacterium TW-7] Length = 243 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 86/249 (34%), Gaps = 14/249 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K ++ QK ++ Q + G V LN+ + A ++ + Sbjct: 8 KLIRQLGQK-KYRKQYNQYLVQGEKNVLELLNSSLNAVDVF----ATSAFINAHQSCFPS 62 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + + K + + A + P D + L++ LD V+DP N+G I Sbjct: 63 TDIIEADEDVLTKASTLVSNNA----AIAIVDMPKADLPKIKGLILALDGVSDPGNLGTI 118 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A + I+T+ + + + + G+ + ++ + Sbjct: 119 IRVADWYGIKHIVTSTDSADAYNPKTISATMGSFVRVSVSQVDLPAYLQTLKLPIYGAFL 178 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 S K N + L++G+E G+R T + G ++LNV+ A Sbjct: 179 DGQSVHK-----TQFNGEGVLLMGSESHGIRQACAGLVTDKITIPAFGEAESLNVAMATG 233 Query: 271 VALYITQNH 279 + L + Sbjct: 234 IILDNFKRQ 242 >gi|315186915|gb|EFU20673.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM 6578] Length = 249 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 56/169 (33%) Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + R + +VL+++ PHN A+LRSA A + + P Sbjct: 19 WVTPRRFRRMQEVVKERTRYITVVLENIYHPHNANAVLRSAEAMGLQDVHIVEDAVPFTP 78 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + + + + + + + + E ++ K A Sbjct: 79 SKGVSMGTARWLSLHRYQDPRVAVSRLREEGYRIIATTPHRTPTPVDEFDVTRGKCAFFF 138 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G E GL E A + M G +++LN+S A + L+ K Sbjct: 139 GGELPGLSDAVLEAADEYLTIPMYGFVESLNISVTAGIVLHNVVQRLRK 187 >gi|301765370|ref|XP_002918107.1| PREDICTED: RNA methyltransferase-like protein 1-like [Ailuropoda melanoleuca] gi|281342377|gb|EFB17961.1| hypothetical protein PANDA_006496 [Ailuropoda melanoleuca] Length = 423 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 46/319 (14%), Positives = 94/319 (29%), Gaps = 56/319 (17%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 Y K R + + + + + L G ++ AL + + Sbjct: 91 LRYDKALPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKVFFFSRLEY 150 Query: 78 LARLDWDANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLL 135 + L D VK + +V + + A + P LL Sbjct: 151 IKELPIDKLKGASLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPETQLRHLLPLL 210 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P I + Sbjct: 211 LICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIINNLDW 270 Query: 196 TDALQKMHSWGFQTI--------------------------------------------- 210 + S + Sbjct: 271 ETLPNYLPSDTRVYVADNCGLYAQAQMSNKASDHGWVCERRLSKLHKYEEEEEEEDDREP 330 Query: 211 -----GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIK 261 L + + + A+++G E G+ ++ E A + + + Sbjct: 331 GASKAWLPELEVQRYDSDWTEAPAAVVIGGETHGVSLESLELAESTGGKRLLIPVMPGVD 390 Query: 262 ALNVSNAAAVALYITQNHF 280 +LN + AA++ L+ + Sbjct: 391 SLNSAMAASILLFEGKRQL 409 >gi|307719082|ref|YP_003874614.1| hypothetical protein STHERM_c14010 [Spirochaeta thermophila DSM 6192] gi|306532807|gb|ADN02341.1| hypothetical protein STHERM_c14010 [Spirochaeta thermophila DSM 6192] Length = 249 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 55/169 (32%) Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + R + + L+++ PHN A+LRSA A + + P Sbjct: 19 WVTPRRFRRMQEVVKERTRYVTVALENIYHPHNANAVLRSAEAMGLQDVHIVEDAVPFTP 78 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + + + R + + + + E ++ K A Sbjct: 79 SKGVSMGTARWLSLHRYRDPRMAVSRLREEGYRIIATTPHRTPTPVDEFDVTRGKCAFFF 138 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G E GL E A + M G +++LN+S A + L+ K Sbjct: 139 GGELPGLSDAVLEAADEYLTIPMYGFVESLNISVTAGIVLHNVVQRLRK 187 >gi|116073311|ref|ZP_01470573.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RS9916] gi|116068616|gb|EAU74368.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RS9916] Length = 229 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L ++L+HV PHN+ AILRS A + S + Sbjct: 18 RMANLTVLLEHVEKPHNLSAILRSCDAVGALEAHAVSLQGRPRTFNSTAQGSQKWVPLYD 77 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + K + L ++K + + A +LGAE GL ++ Sbjct: 78 HPSTEDAVQQLKAKGFKLYGTHLGVNAKDYRDCD-FTGPTAFVLGAEKWGLSDTARDLMD 136 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS AAA L+ Sbjct: 137 EAVFIPMTGMVQSLNVSVAAATLLFEAVRQR 167 >gi|89256424|ref|YP_513786.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115314861|ref|YP_763584.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|156502516|ref|YP_001428581.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010704|ref|ZP_02275635.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica FSC200] gi|254367761|ref|ZP_04983782.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica 257] gi|89144255|emb|CAJ79529.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115129760|gb|ABI82947.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134253572|gb|EBA52666.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica 257] gi|156253119|gb|ABU61625.1| rRNA methyltransferase, TrmH family protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 250 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 88/259 (33%), Gaps = 15/259 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD 84 + + YK+++ + S+ + + + G+ AL P ++I +L T+ A Sbjct: 5 SQKLYKEIKKLH-SSQGRKKSQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPL 63 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + + + + + L + ++VLD + DP Sbjct: 64 NKK------YIITEKDFEALSQTQNPQGVL---ILAEKLKLEQLSFDDDFILVLDRIQDP 114 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIG ILR+A+A +I + + GA + + I+NL + Sbjct: 115 GNIGTILRTAIAVGLKEVILINGTVDPFNPKAIMAGMGAQFSLKFGYITNLAELKNIAKL 174 Query: 205 WGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + L+ G E G+ + + I++L Sbjct: 175 QQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIESL 231 Query: 264 NVSNAAAVALYITQNHFAK 282 NV+ AA + L+ + Sbjct: 232 NVAQAATIYLFEGLRQRLR 250 >gi|87125562|ref|ZP_01081407.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RS9917] gi|86166862|gb|EAQ68124.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RS9917] Length = 229 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 53/153 (34%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R + L ++++HV PHN+ AILRS A + S + Sbjct: 16 NRRMADLTVLVEHVEKPHNLSAILRSCDAVGVLEAHAVSLSGRPRTFNSTAQGSQRWVPL 75 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 K + L D++ + + A +LGAE GL Sbjct: 76 RDHPDITAAVHHLKAQGFKLYGTNLGVDARDYRDCD-FTGPCAFVLGAEKWGLSDAATAL 134 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A A L+ Sbjct: 135 MDQAVFIPMRGMVQSLNVSVATATLLFEALRQR 167 >gi|31544702|ref|NP_853280.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. R(low)] gi|31541548|gb|AAP56848.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. R(low)] gi|284930766|gb|ADC30705.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. R(high)] gi|284931329|gb|ADC31267.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. F] Length = 279 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 90/263 (34%), Gaps = 6/263 (2%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 +N+ +K ++ + + + + G+ ALNN + +K+ +L + Sbjct: 12 KNNPIFKDLKIAFKNGYNKQISDYFCVGGIKNNLIALNNNWLP-HTIFVSKSFDQKLISN 70 Query: 85 AN---LPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDH 140 H + Q D++ L+ + + + LDH Sbjct: 71 IKSKLKQHKVRWIMISDQLNDQLKAINTQAGDCYFYYLLKDLNHPTFDLSDQHNYLFLDH 130 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + DP N+G ILR+A AF ++ + ++ SA + + + Sbjct: 131 IQDPSNLGTILRNAAAFDLTKVLIHDSVNLYNPKLIRASAGAIFSNQISLIKNLDQFLNA 190 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI- 259 + + PL+Q +I G E G+ + A + + Sbjct: 191 IKKKGLRLVATANHEDATPLDQFDHQLGNIIIFGNEANGVSEQLLNQADQTIKIVINNQY 250 Query: 260 IKALNVSNAAAVALYITQNHFAK 282 ++LNV+ ++ + LY + K Sbjct: 251 AESLNVATSSGIILYELNKLWKK 273 >gi|32475415|ref|NP_868409.1| rRNA methylase [Rhodopirellula baltica SH 1] gi|32445956|emb|CAD78687.1| putative rRNA methylase [Rhodopirellula baltica SH 1] Length = 302 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 90/248 (36%), Gaps = 11/248 (4%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 + RH + G V L + + +L ++ P PV + Sbjct: 50 RNLRHRETDDGFIAEGSLVVGRLLQSDLG-VQSVLIHTGRESKYLPLI--PDSVPVYLID 106 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSA 154 + ++ G + H+G+ L+ R+S L + L ++DP N+G++LRSA Sbjct: 107 RELGKELAGYD-FHRGVLAHGFSPAIEPLEKFRDSPQSSLALALVGLSDPENVGSLLRSA 165 Query: 155 VAFSCDGI----ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 A I T + V S + + L D + + Sbjct: 166 AALGVRDILLGPHTISPMTRRVIRVSMASVFRHRFYRFDNPVGQLRDLANAGIASIATLL 225 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++ L I++ + L++G E GL + E AT + L M +LNV A+A Sbjct: 226 DDTAIPLIDLSNAIQSKRRILMVGNEANGLPREIAEAATHRSTLPMRNDTDSLNVGVASA 285 Query: 271 VALYITQN 278 + LY Sbjct: 286 IFLYELTR 293 >gi|322391338|ref|ZP_08064808.1| SpoU rRNA methylase [Streptococcus peroris ATCC 700780] gi|321145764|gb|EFX41155.1| SpoU rRNA methylase [Streptococcus peroris ATCC 700780] Length = 179 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 2/178 (1%) Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + I + QG+ D L + + V DP N+G ++R+A A Sbjct: 3 EEILLDLADSQTPQGIVAIVQKEEEQMPDLTSGKYLFL--EDVQDPGNVGTMIRTADAAD 60 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G+I + + + S +S G+ H+P R+ T + S K Sbjct: 61 FTGVIVSSKSADIYSLKTLRSMQGSHFHVPIYRMPVETFVEEAKKGNLPILATTLSQESK 120 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + + AL++G EG+G+ P E A + H+ M G ++LNV+ AA + ++ Sbjct: 121 DYRELARLENFALVMGNEGQGISPFMVEQADQLVHISMKGQAESLNVAVAAGILMFYL 178 >gi|218439056|ref|YP_002377385.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424] gi|218171784|gb|ACK70517.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424] Length = 153 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 1/149 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL H P N G I R+ A + + + L ++ + Sbjct: 1 MIRLVLVHPQIPPNTGNIARTCAATATELHLVGPLGFEISDRYLKRAGLDYWPLVNLSYH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NL Q G + IG S ++ + L+ G+E GL + + Sbjct: 61 PNLEIFEQVHQKIGGRKIGFSVSGQENFLKFQFEVGDWLLFGSETDGLPANVLASCDATV 120 Query: 253 HLHMP-GIIKALNVSNAAAVALYITQNHF 280 ++ M +++LN+S + AV L+ + Sbjct: 121 YIPMAQPKVRSLNLSVSVAVGLFEAKRQL 149 >gi|15803108|ref|NP_289139.1| putative methyltransferase [Escherichia coli O157:H7 EDL933] gi|25325044|pir||E85904 hypothetical protein yfiF [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12517002|gb|AAG57697.1|AE005488_8 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] Length = 345 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 91/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAXHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ +PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENEXNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|256848250|ref|ZP_05553693.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] gi|256714848|gb|EEU29826.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] Length = 289 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 53/255 (20%), Positives = 93/255 (36%), Gaps = 20/255 (7%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--------PHPFPVKTV 96 Q + AL + L+ K LD + P+ + Sbjct: 33 QDGLFIAESPKVIERALRAGYQPASLLVEEKFLDRDLDDLDHEMAMNQTEGLGRTPIYVI 92 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILR 152 Q I ++ G + LA D + +L+H+ +P NIGAI R Sbjct: 93 NDQQIRQLAGYNLLRGALAAMYRVQRPSFADFLKALPNAHPRIAILEHIVNPANIGAIFR 152 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL------QKMHSWG 206 SA A DG+I T + ++ + G + +P+ I ++ Sbjct: 153 SAAALGIDGVIVTSDSADPLYRRSSRVSMGTVFQVPWTYIDAKIWQTEGISLLHRLGYQT 212 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + Q +K DK+A+ILG+EG GL +T + + M + +LNV+ Sbjct: 213 AAMALRHNTIRIDDPQLVKIDKLAVILGSEGPGLEERTIMQSDFSIKIPMATGVDSLNVA 272 Query: 267 NAAAVALYIT--QNH 279 A+A+A + + Sbjct: 273 AASALAFWELGNRKQ 287 >gi|254708588|ref|ZP_05170416.1| tRNA/rRNA methyltransferase (SpoU) [Brucella pinnipedialis M163/99/10] gi|261316094|ref|ZP_05955291.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261305120|gb|EEY08617.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10] Length = 265 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 63/275 (22%), Positives = 114/275 (41%), Gaps = 18/275 (6%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + +F + D+ +L +RD ++ ++ R G V Sbjct: 1 MQDIDTRSHDCVFVIDDADDIRLAP-YRDIREKDLVGRQQR-------FIAEG-KVVLNV 51 Query: 61 L--NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L ++ + LL +N L L LP PV +VP +D + G VH+G+ Sbjct: 52 LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110 Query: 118 TAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 P L + L++VL +++ N+G+I R+A AF D ++ + Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + + GA +PY + D + GF + L+ + + + + ++ AL+L Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 G EG+GL + E A + M +LNV+ A Sbjct: 231 GTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATA 264 >gi|170767257|ref|ZP_02901710.1| RNA methyltransferase, TrmH family [Escherichia albertii TW07627] gi|170123591|gb|EDS92522.1| RNA methyltransferase, TrmH family [Escherichia albertii TW07627] Length = 345 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 94/244 (38%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVRQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + +K+ L+LG E +GL ++ ++ G + LN+S A V L Sbjct: 279 QGKPLFKTTLPEKMVLVLGQEYEGLPDAARDPNDVRVNIDGTGNVAGLNISVATGVLLAE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|297699541|ref|XP_002826840.1| PREDICTED: RNA methyltransferase-like protein 1-like [Pongo abelii] Length = 420 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 42/317 (13%), Positives = 90/317 (28%), Gaps = 56/317 (17%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 Y K R + + + + + L G ++ AL + + Sbjct: 92 LRYDKAYSGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKMFFFSRLEY 151 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQ 133 L L D + V + I + + + P + Sbjct: 152 LKELPVD--KLKGVSLIKVKFEDIKDWSDLVTPQGIMGIYARXDHVKMTYPKTQLQHSLP 209 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--------- 184 LL++ D++ DP N+G ILRSA C ++ TK + + ++ GA Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIINNL 269 Query: 185 -------------------------------------EHIPYIRISNLTDALQKMHSWGF 207 + ++ G Sbjct: 270 EWETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQRVLKFHKYEEEEDVETGA 329 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKAL 263 L + + + A+++G E G+ ++ + A + + + +L Sbjct: 330 SQDWLPDVEVQSYDSDWTEAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSL 389 Query: 264 NVSNAAAVALYITQNHF 280 N + AA++ L+ + Sbjct: 390 NSAMAASILLFEGKRQL 406 >gi|317153991|ref|YP_004122039.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio aespoeensis Aspo-2] gi|316944242|gb|ADU63293.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio aespoeensis Aspo-2] Length = 226 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 6/159 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +V+D++ DPHN+ A+LRS AF + S S S Sbjct: 40 RQKDLTLVMDNIWDPHNVSAVLRSCDAFGVSDVHLYYTTSQWPDLGKKSSGSAMKWIRLI 99 Query: 190 IRISNLTD------ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + T H G S + +P+ A+IL E +G P+ Sbjct: 100 RHVDAATMVGNLVGGGGSAHDGGQILRTGFSATARPVMDFDFTIPTAIILSNEHRGTSPE 159 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ++ M G++++LNVS AAA+ LY + Sbjct: 160 LAALVPDEVYIPMQGMVQSLNVSVAAAIILYEAFTQRKR 198 >gi|254496266|ref|ZP_05109159.1| RNA methyltransferase [Legionella drancourtii LLAP12] gi|254354523|gb|EET13165.1| RNA methyltransferase [Legionella drancourtii LLAP12] Length = 148 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 49/148 (33%), Gaps = 3/148 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L + L P N G I+R + + + ++ H + Sbjct: 1 MLHIALYQPEIPPNTGNIIRLCANSGAQLHLIHPLGFALDDKRMRRAGLDY--HEWAMVQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + + + ++ +++ + + L+ G E +GL + + Sbjct: 59 HYDDWDDFIIKNPKRRIFCCTTKTQQSYCDVVYQPEDILLFGPETRGLPAEIRNQ-HESI 117 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ L+ Sbjct: 118 RIPMVENSRSLNLSNAVAIILFEAWRQL 145 >gi|260220953|emb|CBA29034.1| hypothetical protein Csp_A10120 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 256 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 52/252 (20%), Positives = 97/252 (38%), Gaps = 10/252 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R + K+++ + + + ++ G H SAAL + +L + L Sbjct: 9 SRENTLLKELRKLSTDNTAYRKAGRFWIEGDHLCSAALARG--VVPSVLVVSESFMPLAP 66 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 +P +I G E+ + + P + + ++LD V D Sbjct: 67 VEYARAAIKTVVIPDAVFREISGLESPAKVG----FLVDLPEVVGIEPMAATVILDRVQD 122 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G+ILRSA AF ++ K + S + ++ GA LQ + Sbjct: 123 AGNVGSILRSAGAFGFRQVLALKGSAALWSPKVLRAGMGAHF----GLRLIEGLELQDLD 178 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + SS +++ A +G EG+G+ A+ A + PG ++L Sbjct: 179 ALKVPLVVTSSHQGDLVQKLDLPHPCAWAMGHEGQGVSEALMAKASVFARIGQPGGEESL 238 Query: 264 NVSNAAAVALYI 275 NV+ AAA+ L+ Sbjct: 239 NVAAAAAICLHA 250 >gi|297155855|gb|ADI05567.1| putative rRNA methylase [Streptomyces bingchenggensis BCW-1] Length = 272 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 55/238 (23%), Positives = 91/238 (38%), Gaps = 5/238 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y + + R G + A LL+ K + D Sbjct: 18 YTGLTDVELRRRREPAEGLFIAEGEKVIRRARQAGYEMRSMLLSAK--WVDVMRDVIEDV 75 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P PV V P +++ G LA L + ++ + +++ VND NIGA Sbjct: 76 PAPVYAVSPDLAERVTGYHVHRGALASMQRKPLPEAEQLLEGARRVAIMESVNDHTNIGA 135 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ + + K + GA+ +PY R+ L+ + GF+ Sbjct: 136 IFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLETWPRGLEAVRHTGFKI 195 Query: 210 IGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ D K + + +AL+LGAEG GL + A + M + +LN Sbjct: 196 LALTPDEKATSIDDAAPHRIERVALMLGAEGDGLSVQALMAADEWVRIPMAHGVDSLN 253 >gi|254480165|ref|ZP_05093413.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium HTCC2148] gi|214039727|gb|EEB80386.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium HTCC2148] Length = 215 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 1/145 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 MV D V+ N+ AI+R+ A + ++ S + Sbjct: 1 MVTDFVHKQRNLSAIVRNCDAVGIQRMHAVIGTEDYKTFRGTAMGSHHWV-DVDTHQNPA 59 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 S + Q +++GAE +G+ E + Sbjct: 60 VALDALKASGYQLVAAHFDEQAADYRQVDYTLPTGILMGAERRGVSAIALERVDRCITIP 119 Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280 M G++++ NVS AA + L Q Sbjct: 120 MVGMVESYNVSVAAGIILAEAQRQR 144 >gi|292486540|ref|YP_003529406.1| putative RNA methylase [Erwinia amylovora CFBP1430] gi|292897775|ref|YP_003537144.1| tRNA (guanosine-2'-O)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291197623|emb|CBJ44717.1| tRNA (guanosine-2'-O)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291551953|emb|CBA18990.1| putative RNA methylase [Erwinia amylovora CFBP1430] Length = 231 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ A++R+A A + +++ +A Sbjct: 16 RQHDLTVCMEQVHKPHNVSAVIRTADAVGVHEV-HAIWPGSRMRTMVSAAAGSNSWVQVK 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S SD + +++G E G+ + + A Sbjct: 75 THRSIADAVTCLKGHNMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITREALDLAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ LY Q Sbjct: 135 RDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|224023423|ref|ZP_03641789.1| hypothetical protein BACCOPRO_00122 [Bacteroides coprophilus DSM 18228] gi|224016645|gb|EEF74657.1| hypothetical protein BACCOPRO_00122 [Bacteroides coprophilus DSM 18228] Length = 223 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 3/161 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 R L++VLD V HNIGA+ R+A AF D I + L K+A GA Sbjct: 59 EFKEARKIPLVVVLDQVRSLHNIGAVFRTADAFLVDKIYLCGITATPPHPELHKTALGAE 118 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + N DA+ +H G+ + + + + K+ K A++ G E KG++ Sbjct: 119 FTVDWKYFKNTQDAVNDLHKDGYVVLAIEQCEGSTMLDDLILEKDKKYAIVFGNEVKGVQ 178 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + + G +LNVS A + L+ + Sbjct: 179 QEVVNSCDGCIEIPQYGTKHSLNVSVTAGIVLWECARRLIR 219 >gi|254419713|ref|ZP_05033437.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3] gi|196185890|gb|EDX80866.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3] Length = 270 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 54/272 (19%), Positives = 101/272 (37%), Gaps = 16/272 (5%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN---PSRK 67 + S+ D A++ ++ ++ + R G V L + R Sbjct: 2 RTISINDPDDARIS----GFRDIRERDLTGR----EGLFVAEGE-VVVRVLASTASRCRP 52 Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG---LALETAPLLSP 124 LL K A D A L PV +D+I G AP + Sbjct: 53 RALLLTEKRVAALSDVIAALAPSVPVYVAGQTVLDRIAGFPLHRGILALGEKPVAPPVEH 112 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L AV + + ++ + + N+G + R+A AF ++ + + + GA+ Sbjct: 113 LLAAVADEDVFVIASGIGNHDNMGGVFRNAAAFGARAVLLDETCCDPFYRKAIRVSVGAV 172 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 P+ + D + M + G + + L+ + L +AL++G+EG GL Sbjct: 173 LRSPFTVGGSAEDLVAAMQTAGVEVLALTPSATLRLADYRPQGPVALMVGSEGPGLPRVV 232 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + M G +LNV+ +A+AL+ Sbjct: 233 IDRC-RAVGVPMAGGFDSLNVAVTSALALHHV 263 >gi|157373101|ref|YP_001481090.1| tRNA guanosine-2'-O-methyltransferase [Serratia proteamaculans 568] gi|157324865|gb|ABV43962.1| tRNA guanosine-2'-O-methyltransferase [Serratia proteamaculans 568] Length = 231 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + L+ V+ PHN+ AI+R+A A + +P +++ +A Sbjct: 10 CEMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGVHQV-HAVWPTPRMRTLVSSAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + + S + ++LG E G+ + Sbjct: 69 SWVNVKTHPTIVDAVTHLKDQGMQILATNLSARAVDFREVDYTRPTCVLLGQEKTGITEE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALRLADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|307325496|ref|ZP_07604698.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu 4113] gi|306888965|gb|EFN19949.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu 4113] Length = 272 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 95/238 (39%), Gaps = 5/238 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y + + + G + A LL++K + D Sbjct: 18 YTGLTDVELRRKREPAEGLFIAEGEKVIRRARLAGYEMRSMLLSSK--WVDVMRDVIEDV 75 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P PV V P+ +++ G LA L ++N++ + +++ VND N GA Sbjct: 76 PAPVYAVSPELAERVTGYHVHRGALASMQRKPLPDAESVLQNARRVAIMESVNDHTNTGA 135 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ + + K + GA+ +PY R+ + L+ + GF+ Sbjct: 136 IFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLESWPRGLEAVRDAGFKI 195 Query: 210 IGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ D K + + +AL+LGAEG GL + A + M + +LN Sbjct: 196 LALTPDEKATTIDDAAPHRLERVALMLGAEGDGLSTQALMAADEWVRIPMAHGVDSLN 253 >gi|194476556|ref|YP_002048735.1| putative tRNA (guanosine-2'-O-) - methyltransferase [Paulinella chromatophora] gi|171191563|gb|ACB42525.1| putative tRNA (guanosine-2'-O-) - methyltransferase [Paulinella chromatophora] Length = 229 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 48/153 (31%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R S L ++L+HV HN+ AILRS A + Sbjct: 16 NYRISDLTVILEHVEKSHNLSAILRSCDAVGI-IEAHAVSLRERLRIFQNTALGSQKWVR 74 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 S + Q + +LGAE GL + E Sbjct: 75 LRNYNSIVPAITQLKQRGFKIYGTNLGIGSIDYRNCDFLGPSSFLLGAEKWGLSQEAAEL 134 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A A+ L+ Sbjct: 135 VDQSITIPMSGMVQSLNVSVATAILLFEVLRQR 167 >gi|324008438|gb|EGB77657.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli MS 57-2] Length = 345 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 93/244 (38%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGKPLFKTSLSAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|331658726|ref|ZP_08359670.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA206] gi|315300563|gb|EFU59792.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli MS 16-3] gi|331054391|gb|EGI26418.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA206] Length = 345 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAERDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|221134031|ref|ZP_03560336.1| rRNA methyltransferase [Glaciecola sp. HTCC2999] Length = 251 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 41/252 (16%), Positives = 96/252 (38%), Gaps = 13/252 (5%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLPHP 90 ++ +QK ++ ++ + L G H + + R+ L + W +LP Sbjct: 5 NVKKLHQK-KYRAEFGHYLLEGEHLILELVKASERQPHLLKSILYVSPEYVQWAHDLPIS 63 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS----QLLMVLDHVNDPHN 146 F V + + ++ I G+ + L + Q + L V DP N Sbjct: 64 FNVIELTTKQMNNISD-TKTPPGIIACVPLESTDQLTTNTTTSADSQRYVYLHEVQDPGN 122 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G I+R+ F ++ + +A + +++ GAL ++P + +L ++ + Sbjct: 123 LGTIIRTLAWFGDVTLLLSPNSVDPFNAKVVRASMGALFYVPIEQDISLAQLNERFDEFA 182 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKALNV 265 + + S + + + G E +G+ + + G I++LN+ Sbjct: 183 YLDMNGESIAATSFKTMP-----CYVFGNEARGVPRDALTQMPATAFTIKGAGNIESLNL 237 Query: 266 SNAAAVALYITQ 277 ++A + +Y Sbjct: 238 ASAVNMCMYELM 249 >gi|303237755|ref|ZP_07324314.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN] gi|302482041|gb|EFL45077.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN] Length = 231 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 34/256 (13%), Positives = 80/256 (31%), Gaps = 34/256 (13%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K + + + G V+ + + ++ + ++ + Sbjct: 6 KIKLIRSLETK-KGREKHQLFVAEGHKVVADLVAAGYHA-EDIFDEEDDIKKVSFLQ--- 60 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 H L L P + ++L + LD V DP N+G Sbjct: 61 ----------------------HPQAKLGVFRLPEPDKVLLPTNELALALDGVQDPGNLG 98 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F I + + + + ++ G++ + Sbjct: 99 TIIRIADWFGIKHIFCSMETADCWNPKVVQATMGSIARVKLHYGDLKAVLNA---LPDDY 155 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALN 264 + + + ++ +I+G EGKG+ + ++ + ++LN Sbjct: 156 PVYGTLLDGDDIYKQSLTAHGMIIMGNEGKGMTEEIRKCVNRKLFIPHFASGESHAESLN 215 Query: 265 VSNAAAVALYITQNHF 280 V+ A A+ + Sbjct: 216 VAIATAIVCSEFRRRR 231 >gi|260902542|ref|ZP_05910937.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus AQ4037] gi|308109724|gb|EFO47264.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus AQ4037] Length = 227 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 63/161 (39%), Gaps = 2/161 (1%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + R + L + L+ V+ P+N+ AI+R+A A + + + S Sbjct: 6 YHRIHQVLKARQTDLTLCLEEVHKPNNVSAIIRTADATGLHKVHAI--WPDKMRTLTHTS 63 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 A S T + + SD+ + A+ILG+E G Sbjct: 64 AGARNWVEVETHNSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIG 123 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + ++ A + M G++++LNVS A+AV LY Q Sbjct: 124 ASEQAKKLADQDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164 >gi|296122015|ref|YP_003629793.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM 3776] gi|296014355|gb|ADG67594.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM 3776] Length = 262 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 62/255 (24%), Positives = 99/255 (38%), Gaps = 30/255 (11%) Query: 54 VHTVSAALNNPSRKIFQLLATKN--ALARLDWDANLPHPFPVKTVPPQ------------ 99 H+V AAL + +++ T N + + H P++T P Sbjct: 8 PHSVLAALQYRPHDVLEIITTANPSSAWSEVLEQARVHRIPIRTALPSSGSERPASGKDR 67 Query: 100 --TIDKIVGKEAVHQGLALETAPLLSPTLDAVR--------------NSQLLMVLDHVND 143 ++ EA + A T L + + LD + D Sbjct: 68 GGKFERQSSSEATVRDRAPLTVEQLFEIAPPGPLAQKSDASGGVESNRHGIWLALDCLQD 127 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 PHN+GA+ R+A F GII T+ S S ++G LE IP+ + NL AL+ Sbjct: 128 PHNVGAVFRAAAFFGVRGIIATRDRSAPLSGTAYDVSAGGLESIPFAQPPNLARALELAK 187 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G +G S +++PL + +++G E GLR T E + + G + +L Sbjct: 188 KSGVWVLGTSEHAQQPLSSIKADRPWLIVIGNEEGGLRRLTLELCDEVCTIPSQGAVGSL 247 Query: 264 NVSNAAAVALYITQN 278 NVS A + LY Sbjct: 248 NVSVATGILLYALSR 262 >gi|257784646|ref|YP_003179863.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469] gi|257473153|gb|ACV51272.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469] Length = 280 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 55/254 (21%), Positives = 102/254 (40%), Gaps = 7/254 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDWDANL 87 Y K+ + ++R + V AL + + L A+ +L + Sbjct: 24 YAKLTNNQLRNRLDPARALMICESPFVVETALLSGCVPLSFLTNASHLEAVQQLIQNYCS 83 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P+ + I+K+ G + P P + + S+ + VL+ + D +N+ Sbjct: 84 VDDVPIFVLSDNQIEKLTGYRMTRGIICAMRRPQARPLEEILSTSKYIAVLEDLVDVNNV 143 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-----LEHIPYIRISNLTDALQKM 202 GA+ RSA A + D +I T + + + S + + + G + S K Sbjct: 144 GAVFRSAAALNVDAVILTAKCADNLSRRVLRVSMGTVLNVPWTRLDEETTSLDLIEKLKA 203 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 HS+ + L+ + + +K K AL G+EG GL KT E + M + + Sbjct: 204 HSFTTCALALTDSAVPLNKDLVKGKKAALFFGSEGYGLDEKTIEACDITTIIPMSHQVDS 263 Query: 263 LNVSNAAAVALYIT 276 LNV+ ++AVA + Sbjct: 264 LNVAASSAVAFWEL 277 >gi|54114167|gb|AAV29717.1| NT02FT1402 [synthetic construct] Length = 250 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 86/256 (33%), Gaps = 15/256 (5%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWDANL 87 YK+++ + S+ + + + G+ AL P ++I +L T+ A Sbjct: 8 LYKEIKKLH-SSQGRKKSQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPLNKK 66 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 + + + + + L + ++VLD + DP NI Sbjct: 67 ------YIITEKDFEALSQTQNPQGVL---ILAEKPKLEQLSFDDDFILVLDRIQDPGNI 117 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ILR+A+A +I + ++ GA + + I+NL Sbjct: 118 GTILRTAIAVGLKEVILINDTVDPFNPKAIRAGMGAQFSLKFGYITNLAKLKNIAKLQQR 177 Query: 208 QTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + + L+ G E G+ + + I++LNV+ Sbjct: 178 KIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIESLNVA 234 Query: 267 NAAAVALYITQNHFAK 282 AA + L+ + Sbjct: 235 QAATIYLFEGLRQRLR 250 >gi|153837870|ref|ZP_01990537.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus AQ3810] gi|149748733|gb|EDM59578.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus AQ3810] Length = 231 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 2/161 (1%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + R + L + L+ V+ P+N+ A++R+A A + + + S Sbjct: 6 YHRIHQVLKARQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVHAI--WPDKMRTLTHTS 63 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 A S T + + SD+ + A+ILG+E G Sbjct: 64 AGARNWVEVETHNSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIG 123 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + ++ A + M G++++LNVS A+AV LY Q Sbjct: 124 ASEQAKKLADQDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164 >gi|323702820|ref|ZP_08114479.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum nigrificans DSM 574] gi|323532208|gb|EGB22088.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum nigrificans DSM 574] Length = 152 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 1/97 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + + + ++ KP + L+ G E GL + Sbjct: 50 YWHLLDLHYHDSLQELQEQYPNGRFWYFTTKGGKPHHRVQYRPDDFLVFGKETAGLPREV 109 Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M +++LN+SN+ A+ALY Sbjct: 110 LSQNPDYCLRIPMLETVRSLNLSNSVAIALYEALRQL 146 >gi|28896932|ref|NP_796537.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|260365880|ref|ZP_05778374.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus K5030] gi|260877833|ref|ZP_05890188.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus AN-5034] gi|260895518|ref|ZP_05904014.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus Peru-466] gi|28805140|dbj|BAC58421.1| tRNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|308088577|gb|EFO38272.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus Peru-466] gi|308089712|gb|EFO39407.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus AN-5034] gi|308113480|gb|EFO51020.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus K5030] gi|328471708|gb|EGF42585.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus 10329] Length = 227 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 2/161 (1%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + R + L + L+ V+ P+N+ A++R+A A + + + S Sbjct: 6 YHRIHQVLKARQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVHAI--WPDKMRTLTHTS 63 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 A S T + + SD+ + A+ILG+E G Sbjct: 64 AGARNWVEVETHNSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIG 123 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + ++ A + M G++++LNVS A+AV LY Q Sbjct: 124 ASEQAKKLADQDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164 >gi|71894580|ref|YP_278688.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53] Length = 237 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 97/256 (37%), Gaps = 23/256 (8%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + + K+ + K ++ + + L G + +S A + L ++K+ + + Sbjct: 3 SKQNPLIKEYKKLQNK-KYRKEKQQFLLEGFNLISEA--KKYTNVITLESSKDLIYKDSI 59 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V + I + ++ + + L ++L++V+D Sbjct: 60 -----------RVDYEIIKHLSETKSPQSIIGVA------SFLKPTNKINKTVILNNVSD 102 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P NIG ILRSA+AF D +I + + + + + Sbjct: 103 PGNIGTILRSALAFEFDTVIIENIDIYNPKIIRSSLGAIFSNLNIISTSNLEEILKDLKA 162 Query: 204 SWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 L + K L + N+KIA+++G E G+ + A+ ++ + ++ Sbjct: 163 QNFKLYYTLLDVNAKKLNEVSFDNEKIAVVVGNEANGIDKNLIKYASEKVYIPIA--FES 220 Query: 263 LNVSNAAAVALYITQN 278 LNV++A A+ L +N Sbjct: 221 LNVASALAIILNKIRN 236 >gi|23308848|ref|NP_600607.2| rRNA methylase [Corynebacterium glutamicum ATCC 13032] gi|21324156|dbj|BAB98781.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032] Length = 198 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 23/54 (42%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + G E GL A + + G ++LN++ AA++ LY + Sbjct: 139 LAKPTAWLFGNEAHGLDESLLAQADHRVRIPIRGRAESLNLATAASICLYESSK 192 >gi|298372920|ref|ZP_06982910.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274 str. F0058] gi|298275824|gb|EFI17375.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274 str. F0058] Length = 253 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 34/245 (13%), Positives = 73/245 (29%), Gaps = 14/245 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99 + G + L R + + ++ L W + V Sbjct: 16 KKFRDSYNMFVAEGEKLIMD-LAMSFRCKYLISTDES----LLWSIDAEERIKVD--SIG 68 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-QLLMVLDHVNDPHNIGAILRSAVAFS 158 + +I + LA+ + + +L++ +D V D N+G I R A + Sbjct: 69 ELKRISSLTTPSKLLAVFYKADYESVISMSQLRGELVLAIDSVQDTGNLGTIARIADWYG 128 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 I+ + + ++ GAL + + + Sbjct: 129 IGHIVCSHGTVDVYNPKCVQATMGAL--ANVSVCYTNLFQFLSEAQECNIPVYGTFLTGD 186 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNVSNAAAVALY 274 + ++ ++LG EG+G+ T + ++LNV+ A AV Sbjct: 187 NIYHRSLSNSGIILLGNEGQGISDSIAGLVTDRITIPHFSASQHRSESLNVAIATAVVCS 246 Query: 275 ITQNH 279 + Sbjct: 247 EFRRR 251 >gi|291533985|emb|CBL07098.1| rRNA methylases [Megamonas hypermegale ART12/1] Length = 126 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A+ILG E G+ + + ++ M G ++LNV+NA ++ +Y Sbjct: 66 WNISYPQDCAIILGNEANGVSDNLLDKCNAKIYIPMKGDAESLNVANAGSMIMYEYCRQ 124 >gi|225619496|ref|YP_002720753.1| TrmH family RNA methyltransferase [Brachyspira hyodysenteriae WA1] gi|225214315|gb|ACN83049.1| RNA methyltransferase, TrmH family, group 3 [Brachyspira hyodysenteriae WA1] Length = 236 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 4/230 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG-KE 108 F+ +T+ A++ + + + + P+K V ++KIVG Sbjct: 2 FITSKNTIVEAISKDLVQTLYIKFPVSKREKDIIKLAEKKKVPIKNVDKNEMEKIVGKIY 61 Query: 109 AVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 ++ + + ++ R + L+ +LD + D HN+GAI+R+A F GII Sbjct: 62 SIAADIKENVEIGIDSFIEKAFEKRENPLIFILDSITDVHNLGAIIRNAYFFDVAGIIMP 121 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 K S + + + + GA H+P +NL + M GF S + LE Sbjct: 122 KDNSAPINEKVYEISEGAAYHLPISIETNLNRVIDLMKDKGFWIYYASEKGETSLEDFKF 181 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 N A+ILG E G+R ++ + ++ +LNVS A+A+ Y Sbjct: 182 NSPTAIILGNEHSGVRDILKKNSDGSIIINAVNDFDSLNVSAASAIIGYA 231 >gi|196250736|ref|ZP_03149424.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. G11MC16] gi|196209815|gb|EDY04586.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. G11MC16] Length = 157 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + ++ +L ++ ++ Sbjct: 1 MPLHVVLYQPEIPANTGNIARTCAATDTALHLIRPLGFSTDDKMLKRAGLDYWPYVNISY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQETA-T 249 ++ + + F I K + G E GL + E Sbjct: 61 YDSIDELFARFPGGEFYFITKFGQQYYDSFDFSDQKKDIFFVFGRETTGLPKELLEANKD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 121 RCLRIPMNDKVRSLNLSNTAAILVYEALRQ 150 >gi|332703269|ref|ZP_08423357.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio africanus str. Walvis Bay] gi|332553418|gb|EGJ50462.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio africanus str. Walvis Bay] Length = 151 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 2/146 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VL P N G+I R A + + L ++ EH+ Sbjct: 1 MHIVLYQPQIPPNTGSIARLCAATGTPLHLIEPLGFSIDDRHLKRAGLDYWEHVRVKVWP 60 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + L + + + + P + AL+LG E GL + E+ + Sbjct: 61 DWQAYLDS--AQPTRLVATCARFGTPHHEFSFASDDALVLGPEATGLPMRIIESIPQLVR 118 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 + + G +++LN++NAA+V LY Sbjct: 119 IPIWGQVRSLNLANAASVLLYEAYRQ 144 >gi|255713698|ref|XP_002553131.1| KLTH0D09680p [Lachancea thermotolerans] gi|238934511|emb|CAR22693.1| KLTH0D09680p [Lachancea thermotolerans] Length = 393 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 51/315 (16%), Positives = 108/315 (34%), Gaps = 49/315 (15%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 +K + ++ A ++ + K ++ + P +++G ++V + L R Sbjct: 75 PNRQKGRAKQNVEEASVQHDQHKSK-FRNRSVTGSLRPNPLMEYVHGTNSVISVLQADKR 133 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS--- 123 + + ++ ++ ++ + + + L Sbjct: 134 DYYSRILYHASVTDEIRSLAKKRGAQLEMTDKHRLNILTNYAVHNNVVLETKPLQLPEIS 193 Query: 124 ----------------------------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + L + LD V+DPHN+GAI+RSA Sbjct: 194 QVGSCDPEGSTFAYDELFFDEASERRTSFIQKENKKFPLGLYLDEVSDPHNMGAIIRSAY 253 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 D +I ++R S ++K++SGA E +P + D K G+ + Sbjct: 254 FLGVDFMIMSRRNCAPLSPTVSKTSSGATELLPIFTVDKPLDFFSKSQKEGWTFVSAGVS 313 Query: 216 SKKPLEQEIKND-----------KIALILGAEGKGLRPKTQETATSMAHLHM------PG 258 + + K + + L++G EG+G+R Q + + + Sbjct: 314 KQNKFAKNKKIEAQDLHGMLKELPVILVVGNEGEGVRTNLQMRSDFLVEIPQGRGAAGTR 373 Query: 259 IIKALNVSNAAAVAL 273 + +LNVS A A+ L Sbjct: 374 SVDSLNVSVATAILL 388 >gi|82779142|ref|YP_405491.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae Sd197] gi|309784368|ref|ZP_07679007.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae 1617] gi|81243290|gb|ABB64000.1| putative RNA methylase [Shigella dysenteriae Sd197] gi|308927875|gb|EFP73343.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae 1617] Length = 229 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 1/166 (0%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 T + A R L + ++ V+ PHN+ AI+R+A A + Sbjct: 1 MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + +A + SD+ + +++G Sbjct: 60 MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E G+ + A + M G++++LNVS A+A+ LY Q+ Sbjct: 120 QEKTGITEEALALADQDIIIPMIGMVQSLNVSVASALILYEAQHQR 165 >gi|320531672|ref|ZP_08032612.1| RNA 2'-O ribose methyltransferase substrate binding [Actinomyces sp. oral taxon 171 str. F0337] gi|320136092|gb|EFW28100.1| RNA 2'-O ribose methyltransferase substrate binding [Actinomyces sp. oral taxon 171 str. F0337] Length = 304 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 106/260 (40%), Gaps = 7/260 (2%) Query: 26 NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--L 81 ++ ++ + ++ + G V A+ + ++ + T+ AL R Sbjct: 42 SNPASARISRVAGLSRRNARAKHRRFLVEGPQGVREAVRHAPGRVLDVYLTEAALERHGE 101 Query: 82 DWDANLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 WD + V Q +D + + + +A E A+ ++L+ VL Sbjct: 102 IWDEAVAVGLYVHVTTQQVMDAMSPDAQGLLAVVATEEVTGSEALTTALEGARLVAVLAQ 161 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 DP N G I+R+A A D ++ + + + +S +G+L H+P + L DA+ Sbjct: 162 AQDPGNAGTIIRAADAAGADAVVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVALDDAVT 221 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 +HS G + L + A +LG E GL + A ++ + + G Sbjct: 222 ALHSAGLTVLAADGRGDLDLFEAESLLEAPSAWLLGNEAHGLPSEALSRADAVVSIPIYG 281 Query: 259 IIKALNVSNAAAVALYITQN 278 ++LNV+ AAAV LY + Sbjct: 282 KAESLNVAAAAAVCLYASAR 301 >gi|297184491|gb|ADI20605.1| rRNA methylases [uncultured gamma proteobacterium EBAC_27G05] Length = 240 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 55/228 (24%), Positives = 103/228 (45%), Gaps = 2/228 (0%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 G HT+ L I Q+ N R+ +L V + + + + + Sbjct: 12 GFHTIEMLLKLSPENIKQIFIPANRNDARIQNLISLAEAASVSVEKKKNLSQH-PEATLK 70 Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 + + + L R++ +V+D+V DP N+GA +RSA A + G+I K + Sbjct: 71 KEEVFDLSDLKKYEETIQRDNPTFLVIDNVIDPRNLGACIRSAAASNVAGVIINKHHCSP 130 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + ++ + ++G E + ++NL +A++ G+ +G S +K + N I Sbjct: 131 ITPLVRQVSAGGTEAMKIFIVTNLINAIKHFEKLGYLILGTSEHAKSMHTELDLNKPILT 190 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 I+G+E +G+R KT E +++ L + +LNVS AA V L+ Sbjct: 191 IIGSEEEGMREKTLEKCSTVCTLSKNETLNSLNVSVAAGVILFEIARQ 238 >gi|213609646|ref|ZP_03369472.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 184 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPGSRMRTMASAAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + SD + +++G E G+ + Sbjct: 69 SWVQVKTHRTIDDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|170079356|ref|YP_001735994.1| RNA methyltransferase [Synechococcus sp. PCC 7002] gi|169887025|gb|ACB00739.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7002] Length = 151 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 1/146 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL H P N G I R+ A + + L ++ H+ +L Sbjct: 4 LVLVHPQIPPNTGNIARTCAATDTELHLVGPLGFEIGDRHLKRAGLDYWPHVKLSFYPDL 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 LQ + G + +G S + D L+ G+E +GL + + + + Sbjct: 64 EHFLQAQATRGGRLLGYSVRGTSQYTEFTYQDDDWLLFGSETQGLPAELLQRCDATLTIP 123 Query: 256 MPGI-IKALNVSNAAAVALYITQNHF 280 + +++LN+S +AAV L+ + Sbjct: 124 INKTHVRSLNLSVSAAVGLFEVRRQL 149 >gi|307702986|ref|ZP_07639933.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC 35037] gi|307623379|gb|EFO02369.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC 35037] Length = 212 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 10/217 (4%) Query: 58 SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 A+ I ++ A ++ +L P V + + + + QG+ Sbjct: 3 EEAVQAGVT-IEKIFALESYRDQL---VAFPQTV---WVSEEILRDLADTQ-TPQGIVAV 54 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 D + L + + V DP N+G ++R+A A G+I + + + S Sbjct: 55 IQKEEVGLPDFRQGKYLFL--EDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTL 112 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S G+ H+P R+ ++ + S S K + + L++G EG Sbjct: 113 RSMQGSHFHLPIYRMPLVSFVEEAKKSNLPILATTLSRDSKDYRELSSLENFVLVMGNEG 172 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +G+ E+A + H+ M G ++LNV+ AA + ++ Sbjct: 173 QGISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 209 >gi|255534645|ref|YP_003095016.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Flavobacteriaceae bacterium 3519-10] gi|255340841|gb|ACU06954.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Flavobacteriaceae bacterium 3519-10] Length = 255 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 1/150 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L V++ + N AI+RS A I+ + + + + Sbjct: 67 FVLPVMEDIFQFRNAAAIVRSVEACGFHKIVAMESENEFNPNLRVTKGAETWV-EVEKMP 125 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 NL + + + L + +AL+ G E +G+ + + A Sbjct: 126 HNLESLTEIKNRGYKILAVSPEKNATMLPDYQLKEPVALVFGTEKEGVTEEILDFADETV 185 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G ++ NVS AAA+ Y + + Sbjct: 186 AIPMYGFTRSFNVSVAAAICFYELKQKLIR 215 >gi|111220928|ref|YP_711722.1| putative rRNA methylase [Frankia alni ACN14a] gi|111148460|emb|CAJ60131.1| Putative rRNA methylase [Frankia alni ACN14a] Length = 299 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 57/285 (20%), Positives = 91/285 (31%), Gaps = 42/285 (14%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + R G ++ AL R +L + L + D LP Sbjct: 13 DYVALTDVALRRRREPADGLFIAEGERVITRALRAGYRP-RSVLVSPARLGAVPAD--LP 69 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV + I G E LA D + ++ ++V + + N+G Sbjct: 70 ADVPVYVAGADVLAAITGFEVHRGALASMCRRPPLAPADVLAAARRVLVCEDIVSHTNLG 129 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------------ 196 AI RSA D ++ + R + + + G + +PY R+ Sbjct: 130 AIFRSAAGLGMDAVLLSPRCADPLYRRSVRVSMGEVFAVPYARLDPWPGALGLLRDAGFT 189 Query: 197 ---------------------------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 T S ++ Sbjct: 190 LLALTPAADAADLGEFAAQLATVDPVGSGPPGSGPPDSGTAAPGSTVDPADPAAGAPARV 249 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL+LG EG GL TQ AT+ A + M + +LNV+ AA+A Y Sbjct: 250 ALLLGTEGAGLSEPTQAAATARARIPMAHGVDSLNVAATAAIACY 294 >gi|297588550|ref|ZP_06947193.1| rRNA methylase [Finegoldia magna ATCC 53516] gi|297573923|gb|EFH92644.1| rRNA methylase [Finegoldia magna ATCC 53516] Length = 243 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 50/253 (19%), Positives = 97/253 (38%), Gaps = 18/253 (7%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +++ YK ++S +K + + G A+ + +L R D Sbjct: 6 SNKIYKHVKSLYKKKYR-YKYNEFVIEGYKLYEEAIKSNLNIKQIIL-------REGEDL 57 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + + +G+ + + ++ L+ +NDP Sbjct: 58 -----IDGCVCFDSKTFNSLSEMNNPEGIICVVDFIEKKD----NYTDKILFLECINDPG 108 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+RSA AF + II + + +SA G+L I S K + + Sbjct: 109 NLGTIIRSAEAFGYNNIILSDNSCDIYNLKTIRSAMGSLFRINISYESIHVLENYKSNGF 168 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 L +SK LE + K +K LI+G E G+ + ++ A + M + ++LN Sbjct: 169 KIYETSLEKNSKSILEIKDK-EKHVLIIGNEANGISDEIKKYADEFLIIPMDNVTESLNA 227 Query: 266 SNAAAVALYITQN 278 S AA+++++ Sbjct: 228 SIAASLSMFYLSK 240 >gi|254430609|ref|ZP_05044312.1| RNA methyltransferase TrmH, group 2 [Cyanobium sp. PCC 7001] gi|197625062|gb|EDY37621.1| RNA methyltransferase TrmH, group 2 [Cyanobium sp. PCC 7001] Length = 155 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 7/150 (4%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +L P N G + R+ A + + + L ++ ++P ++ Sbjct: 1 MLYQPQIPPNTGNVARTCAATAQELHLVGPLGFEISDRTLRRAGLDYWPYVPLTLHADWP 60 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 G + + LS+ P L+ G E GL + + A ++ + M Sbjct: 61 AFTGVQGRQGGRLVALSAHGITPYTAFRFQPDDWLLFGRESDGLPAEPLQRADAVLTIPM 120 Query: 257 P-------GIIKALNVSNAAAVALYITQNH 279 G +++LN+S A V L+ Sbjct: 121 RRSRHHPEGGVRSLNLSVAVGVVLFEALRQ 150 >gi|308189702|ref|YP_003922633.1| tRNA/rRNA methylase [Mycoplasma fermentans JER] gi|319776886|ref|YP_004136537.1| rRNA methylase [Mycoplasma fermentans M64] gi|307624444|gb|ADN68749.1| tRNA/rRNA methylase [Mycoplasma fermentans JER] gi|318037961|gb|ADV34160.1| rRNA methylase [Mycoplasma fermentans M64] Length = 237 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K ++ + ++ + + G H V AL KN + + + Sbjct: 10 SNPKIKYLKEVQKDNK----SDYFLVSGYHLVQEALA------------KNLVIEIFEEE 53 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + V + I +AL P + +++LD+V DP Sbjct: 54 SKSTYKTATLVKSNVLKSISSTMHPDGVVALCLKPKS-------QIKNKVILLDNVQDPG 106 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+G I+R+A F D +I+ + + V A + + + + + Sbjct: 107 NVGTIIRNAACFGFDTVISNVNFYN-DKVVRATQGALFQVSLIKENNNEDLIKVLNNEGY 165 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 L DS K E +I +K+ LILG EG G+ + ++ + ++LNV Sbjct: 166 FIVATSLDKDSIKLDELKINKEKVVLILGNEGNGINKNLYKYCDQKVYIPI--EFESLNV 223 Query: 266 SNAAAVAL 273 + A+ + L Sbjct: 224 AVASGIIL 231 >gi|261250548|ref|ZP_05943123.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio orientalis CIP 102891] gi|260939117|gb|EEX95104.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio orientalis CIP 102891] Length = 227 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 2/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A + + + SA Sbjct: 16 RQADLTLCLEEVHKPNNVSAVIRTADATGIHKVHAV--WPHEMRTLSHTSAGARNWVDVE 73 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + SD+ + A+ILG+E G K ++ A Sbjct: 74 THDNIEDAIAELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASEKAKQLAD 133 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+AV LY Q Sbjct: 134 QDIIVPMVGMVQSLNVSVASAVILYEAQRQR 164 >gi|224080139|ref|XP_002306029.1| predicted protein [Populus trichocarpa] gi|222848993|gb|EEE86540.1| predicted protein [Populus trichocarpa] Length = 269 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 1/148 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R+ L +V++ + D N+ A+ RSA A + S + GA + + Sbjct: 69 RSYSLCLVVEGLTDFGNVSAVFRSADALGFQSVHVISCDSSKRYKENRHVSMGAEKWLDI 128 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETA 248 + D Q + S G++ ++ + A+++G E +G+ + E + Sbjct: 129 ELWDSAKDCFQVLKSRGYRIATTHVGIDAVSIYDMDWSCPTAIVVGNENRGISDEALELS 188 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276 + M G++ + NVS AA + ++ Sbjct: 189 DLHCSIPMKGMVDSFNVSVAAGILMHHA 216 >gi|530425|emb|CAA83745.1| rRNA methylase [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 223 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 83/217 (38%), Gaps = 7/217 (3%) Query: 73 ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----- 127 L LD + V +D+++ +HQG+ + D Sbjct: 5 IWVKNLKLLDEFDLKNTKIKINVVSENKLDQLLKTNELHQGIIAQIKDFNYTPFDELLND 64 Query: 128 -AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT-TKRYSPSESAVLAKSASGALE 185 + L++VLD ++DP+N GAI+RS + DGII K+ S VL S+ A + Sbjct: 65 LNTKEKSLVLVLDQIHDPYNFGAIIRSCSLLNVDGIIILDKKQVQVNSTVLKTSSGSAFD 124 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + ++ + + + + + +K +I+G E KG+ Sbjct: 125 IKISKTNNLNNAIKILKNNGFWIYATNLNQNSTDMTKTQFANKSVVIIGNEQKGVSELLT 184 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + ++ I + N S A ++ + N+ K Sbjct: 185 KNSDFNIYVPSNKNIDSFNSSVACSIICFWIANYLNK 221 >gi|117928367|ref|YP_872918.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus 11B] gi|117648830|gb|ABK52932.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus 11B] Length = 304 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 90/242 (37%), Gaps = 5/242 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY+ + + R + AL R I + L L + Sbjct: 46 ADYRALTDVELRKRVEPAHGIFIAESALVIQRALAAGYRMI-SAFVSDRWLDELADQLS- 103 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 PV P+ + + G LA LS + +R S+ ++VL+ VN+ N+ Sbjct: 104 SVEAPVYVGAPEVLQSVTGFHVHRGALAAFARRPLSSVEEILRTSRRIVVLEDVNNHTNL 163 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE---HIPYIRISNLTDALQKMHS 204 GA+ R A A DG++ + R + + + GA+ + + + + Sbjct: 164 GAVFRCAAALGMDGVLLSPRCADPLYRRSVRVSMGAVFAIPYARFDTWPDELTGVSAAQF 223 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + + ++IAL+LGAEG GL + + A + M + +LN Sbjct: 224 RLLALTPDPAATDIRTLRVAAGERIALMLGAEGPGLSKQALDRAELRVRIPMHAGVDSLN 283 Query: 265 VS 266 V+ Sbjct: 284 VA 285 >gi|289643246|ref|ZP_06475372.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca glomerata] gi|289506951|gb|EFD27924.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca glomerata] Length = 265 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 94/236 (39%), Gaps = 9/236 (3%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + G V+A + + ++ +A R PV+ V + + + Sbjct: 17 GEFLVEGPQAVAA--GLAAGALREIFVGSSAAGRYGELVGTA-GIPVRVVSDEAVASLSE 73 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 +AL + + +L+ + DP N G I+RSA A D ++ Sbjct: 74 TVTPQGVVALA--EQPRHRIADLDTPRLVAICVDTQDPGNAGTIVRSADAAGADAVVFAG 131 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-- 224 ++++G++ H+P + + DA++++ G + + + + + ++ Sbjct: 132 ASVDPFGGKAVRASAGSIFHLPVVTDIGVADAVRQIREHGCRIVATTPSAPRDIDTAQDA 191 Query: 225 --KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + G E +GL T +A ++ + + G ++LN++ A A+ LY + Sbjct: 192 GELDTPTGWLFGNEARGLPRATVVSADAVLRVPVYGQAESLNLAVATAICLYASAR 247 >gi|77166275|ref|YP_344800.1| RNA methyltransferase TrmH, group 2 [Nitrosococcus oceani ATCC 19707] gi|254435470|ref|ZP_05048977.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus oceani AFC27] gi|76884589|gb|ABA59270.1| RNA methyltransferase TrmH, group 2 [Nitrosococcus oceani ATCC 19707] gi|207088581|gb|EDZ65853.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus oceani AFC27] Length = 161 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R + + L ++ H Sbjct: 1 MFHVVLLEPEIPPNTGNIIRLCANTGAILHLVQPLGFELDDRRLRRAGLDY--HEWAKVK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 + + + Q S+ ++P ++ + AL+ G E +GL + E + Sbjct: 59 VHPSLEHFLDKTQPRQLWACSTRGQQPYDKANFHPGDALLFGPETRGLPRELLETLLSRQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M ++LN+SNA AV LY Sbjct: 119 VLRIPMEPTSRSLNLSNAVAVVLYEAWRQ 147 >gi|255584325|ref|XP_002532898.1| rRNA methylase, putative [Ricinus communis] gi|223527332|gb|EEF29478.1| rRNA methylase, putative [Ricinus communis] Length = 334 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 61/149 (40%), Gaps = 1/149 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R+ + +V++ ++D N+ A RSA A + S + GA + + Sbjct: 133 NRSYSVCLVVEGLSDFGNVSAAFRSADALGFQSVHVVSCDSSKRYRDNRHVSMGAEKWLD 192 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQET 247 + + + + S G++ ++ + A+++G E +G+ + E Sbjct: 193 IELWDSTQECFEVLKSRGYRIATTHVGMDAVSIYDMDWSCPTAIVVGNENRGISDEALEL 252 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + M G++ + NVS AA + ++ Sbjct: 253 SDLHCSIPMKGMVDSFNVSVAAGILMHQA 281 >gi|144575178|gb|AAZ43977.2| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53] Length = 239 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 97/256 (37%), Gaps = 23/256 (8%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + + K+ + K ++ + + L G + +S A + L ++K+ + + Sbjct: 5 SKQNPLIKEYKKLQNK-KYRKEKQQFLLEGFNLISEA--KKYTNVITLESSKDLIYKDSI 61 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 V + I + ++ + + L ++L++V+D Sbjct: 62 -----------RVDYEIIKHLSETKSPQSIIGVA------SFLKPTNKINKTVILNNVSD 104 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P NIG ILRSA+AF D +I + + + + + Sbjct: 105 PGNIGTILRSALAFEFDTVIIENIDIYNPKIIRSSLGAIFSNLNIISTSNLEEILKDLKA 164 Query: 204 SWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 L + K L + N+KIA+++G E G+ + A+ ++ + ++ Sbjct: 165 QNFKLYYTLLDVNAKKLNEVSFDNEKIAVVVGNEANGIDKNLIKYASEKVYIPIA--FES 222 Query: 263 LNVSNAAAVALYITQN 278 LNV++A A+ L +N Sbjct: 223 LNVASALAIILNKIRN 238 >gi|110833674|ref|YP_692533.1| RNA methyltransferase [Alcanivorax borkumensis SK2] gi|110646785|emb|CAL16261.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax borkumensis SK2] Length = 230 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 54/157 (34%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 R L +++D V+ PHNI AI+R+ A + + + A S Sbjct: 10 CDTLDRRQPDLTVIMDGVHKPHNIAAIVRTCDAVGILDVHAVLPKNRARMAAGTAMGSQR 69 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + S + L SD Q AL+LG E G+ + Sbjct: 70 WVQVHKRDESTDVIRELQGQGVQVLAAHL-SDDAIEYRQVDYTRPTALLLGTEKFGVSDE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++ NVS AAA+ L Sbjct: 129 VASAVDQNVTIPMMGMVESFNVSVAAAIILSEACEQR 165 >gi|297243612|ref|ZP_06927543.1| rRNA methylase [Gardnerella vaginalis AMD] gi|296888363|gb|EFH27104.1| rRNA methylase [Gardnerella vaginalis AMD] Length = 302 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 49/293 (16%), Positives = 99/293 (33%), Gaps = 43/293 (14%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 + ++H ++RR + S + H + + G +V A+ + + T Sbjct: 7 IDNTHSERVRR-------LVSLGRAKSH--DLQRFLVEGPQSVREAVRYAIDSLCDIYVT 57 Query: 75 KNALA------------RLDWDANLPHPFPVKTVPPQTIDKIVGKE-----AVHQGLALE 117 K+A R L V V + KI + + Sbjct: 58 KDACEGNEKESSQFSSLREIVKEALSRSCYVHPVESSIMQKISADSQGIVAVANSKSLDD 117 Query: 118 TAPLLSPTLDAVRNSQ--------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 L + + V DP N GAI+R A CD ++ Sbjct: 118 IYFSEFKNLQQSAQIKSKNDFKPLRIAACWQVRDPGNAGAIIRVADVAGCDAVVFVDDCV 177 Query: 170 PSESAVLAKSASGALEH---------IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ L +S +G+L H + + + +G I K + Sbjct: 178 SRWNSKLVRSTAGSLFHLPVVQLSVQDWFECAAKSNIRVIAADIYGTDKIKPVPFPKILV 237 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E+ + +A++ G E +GL + + ++ + + G +++N++ +AAV L Sbjct: 238 NSEVISSSLAILFGNEARGLPKEVLQQVDDISIIPIYGKAESMNLATSAAVML 290 >gi|317969845|ref|ZP_07971235.1| rRNA methylase [Synechococcus sp. CB0205] Length = 157 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 6/151 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G + RS A + + + L ++ + R +N Sbjct: 4 VVLFQPEIPPNTGNVARSCAASCTELHLIEPLGFQIDDRTLKRAGLDYWPWVQLERHANW 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 L+K G + + LS + +P + L+ G E GL + E + Sbjct: 64 EQFLEKRRQRGGRLLALSRHASEPYHRIQYRADDWLLFGRESSGLPGELLEHVDQRLLIP 123 Query: 256 MP------GIIKALNVSNAAAVALYITQNHF 280 MP G +++LN++ + V L+ Sbjct: 124 MPGSVDQGGGVRSLNLATSVGVVLFEALRQL 154 >gi|227548325|ref|ZP_03978374.1| rRNA methylase [Corynebacterium lipophiloflavum DSM 44291] gi|227079643|gb|EEI17606.1| rRNA methylase [Corynebacterium lipophiloflavum DSM 44291] Length = 273 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 85/253 (33%), Gaps = 22/253 (8%) Query: 45 QPENLFLYGV----HTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPP 98 + ++ G V + + ++ L D LP V V Sbjct: 25 RGGLVYAEGPLICGRLVES-----RFPLRSVIGFGGRLESFLADYGEVLPASVGVYEVTR 79 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + ++ G + +A+ P + ++ L++L+ V D NIG+I R+A Sbjct: 80 PLLAEVAGYDMHRGLIAVAERPQPLSVAEVTDGARTLVILEGVGDHENIGSIFRNAAGMD 139 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 DG++ + + + G +P+ + Q+ T Sbjct: 140 VDGVLFGAATADPLYRRSVRVSMGHALRLPFAHLDGTATTWQRSLDELRLTGWRLLSLTP 199 Query: 219 PLEQEIK-----------NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 E DK+AL++G EG GL A + M +LNV+ Sbjct: 200 DDAAEHLAEALVDATGRPWDKVALLVGGEGPGLTEHAMRATHVRARIPMAPGTDSLNVAT 259 Query: 268 AAAVALYITQNHF 280 +AA+A Y Q Sbjct: 260 SAAIAFYERQRSL 272 >gi|255099812|ref|ZP_05328789.1| putative RNA methylase [Clostridium difficile QCD-63q42] Length = 176 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 74/157 (47%), Gaps = 1/157 (0%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + + + +++LD + DP N+G I+R+A + D II K + + +S G++ Sbjct: 21 SESINKKDKFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSI 80 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 I ++ + + + S F + +++ ++ K+AL++G E G+ + Sbjct: 81 F-DMNIIDASQDETVDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGNEANGINEEL 139 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + + + G ++LN + ++A+ +Y + + Sbjct: 140 VSKSDILVKIPIYGKAESLNAAISSAILMYEIKKYLI 176 >gi|138894170|ref|YP_001124623.1| rRNA methylase [Geobacillus thermodenitrificans NG80-2] gi|134265683|gb|ABO65878.1| rRNA methylase [Geobacillus thermodenitrificans NG80-2] Length = 157 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + ++ +L ++ ++ Sbjct: 1 MPLHVVLYQPEIPANTGNIARTCAATDTALHLIRPLGFSTDDKMLKRAGLDYWPYVNISY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQETA-T 249 ++ + + F I +K + G E GL + E Sbjct: 61 YDSIDELFARFPGGEFYFITKFGQQYYDSFDFSDQEKDIFFVFGRETTGLPKELLEANKD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 121 RCLRIPMNDKVRSLNLSNTAAILVYEALRQ 150 >gi|325193446|emb|CCA27771.1| rRNA methyltransferase putative [Albugo laibachii Nc14] Length = 220 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 36/243 (14%), Positives = 70/243 (28%), Gaps = 51/243 (20%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALAR----------LDWDANLPHPFPVKTVPPQT 100 LYG H+V AL R ++ L + + + H ++ + T Sbjct: 14 LYGYHSVLQALEVVHRDVYALYIKEESDRKQEGKAKQFTNKILHLAKAHNIAIRPLDKWT 73 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 ++KI + HQG+ LDA + A + + Sbjct: 74 LNKIS-NDKPHQGVI----------LDASPLQIPFSEPVAPRNDEVSRASAGALEILAAA 122 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +++ + A+ + + S P+ Sbjct: 123 NMLSQTKCLNEFLALSSALS-------------------------WRTVGASCSKHATPI 157 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-----IIKALNVSNAAAVALYI 275 L++G E +GLR + + + + +LNVS A+ + LY Sbjct: 158 TGLSSKCPTILVMGNEQRGLRKNVIKCCEQLVCIPGNSKQEVTNVDSLNVSVASGILLYE 217 Query: 276 TQN 278 Sbjct: 218 LLK 220 >gi|154495145|ref|ZP_02034150.1| hypothetical protein PARMER_04193 [Parabacteroides merdae ATCC 43184] gi|154085695|gb|EDN84740.1| hypothetical protein PARMER_04193 [Parabacteroides merdae ATCC 43184] Length = 256 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 92/256 (35%), Gaps = 18/256 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S K ++ ++ G V+ + + +LA + + + Sbjct: 6 KVKYIHSLEMK-KYRNELNAFVAEGNKLVADMMFA--FECELILAKPSWM-------AMQ 55 Query: 89 HPFPVKTVPPQTIDKI--VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 P K + D I Q + +A ++ L++ LD + DP N Sbjct: 56 GNIPAKELLEAEGDDIRKASFLKNPQDVLAVFKRPDWSLDEADPSTSLVLALDGIQDPGN 115 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G I+R A F + I+ + + S ++ GAL H+ K + Sbjct: 116 LGTIIRLADWFGIEHIVCSPDTADVFSPKTVQATMGALAHVKVHYTELE--DYLKAQAAR 173 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKA 262 + + + + + + +++G EG G+RP+ ++ ++ ++ Sbjct: 174 QIPLFGTFLDGENMYTKELSANGIIVMGNEGNGIRPQIEKLINQKLYIPSFPPERETSES 233 Query: 263 LNVSNAAAVALYITQN 278 LNV+ A AV + Sbjct: 234 LNVAIATAVICAEFRR 249 >gi|322835058|ref|YP_004215085.1| tRNA guanosine-2'-O-methyltransferase [Rahnella sp. Y9602] gi|321170259|gb|ADW75958.1| tRNA guanosine-2'-O-methyltransferase [Rahnella sp. Y9602] Length = 232 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V+ PHN+ A++R+A A I + +++ +A Sbjct: 16 RQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEI-HAVWPTTRMKTLVSSAAGSNSWVQVK 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + S+ ++LG E G+ P+ A Sbjct: 75 THKTIQDAVAKMKAKGMQILATNLSEKAVDFRAIDYTRPTCILLGQEKTGITPEALALAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 S + M G++++LNVS A+A+ LY Q Sbjct: 135 SDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|326625488|gb|EGE31833.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 206 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +++G E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 87 YTRPTCILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 142 >gi|229495405|ref|ZP_04389140.1| RNA methyltransferase, TrmH family [Porphyromonas endodontalis ATCC 35406] gi|229317848|gb|EEN83746.1| RNA methyltransferase, TrmH family [Porphyromonas endodontalis ATCC 35406] Length = 261 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 95/255 (37%), Gaps = 13/255 (5%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 KK+ Q+++ G + L L+ T + L ++ + H Sbjct: 14 KKLIVALQQTKVRRAEGLFVAEGPKLIGELLAT--FPCRLLVTTASFLPLVEGLGQIQH- 70 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 V +P + + + + P+ + LL+ D+V DP N+G+I Sbjct: 71 --VVLLPEEYDFSSLSTLRTPRPMIALLELPTPPSASTITAPSLLL--DNVQDPGNVGSI 126 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ-- 208 LR+A F C + TT+ + S + ++ GAL + I+++ Q Sbjct: 127 LRTADWFGCRSVFTTEGTADPFSPKVVQATMGALARVKVTPITDVHTLGQAHRDGVAILG 186 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALN 264 T D + + LI+G EG+G+ P + T + +++LN Sbjct: 187 TFLEGEDILAHHSTPLFSSPYLLIMGNEGQGISPTVAQYVTQRLTIPSSSPDGKQVESLN 246 Query: 265 VSNAAAVALYITQNH 279 V+ A A+ L H Sbjct: 247 VAAATAIVLACLHRH 261 >gi|145594428|ref|YP_001158725.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440] gi|145303765|gb|ABP54347.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440] Length = 314 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 89/244 (36%), Gaps = 8/244 (3%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTI 101 G V AL P + +L T AL R A PV + Sbjct: 37 EATGRFLAEGPQAVREALARPGT-VLELFGTPAALDRYRDLAAQAAAADLPVSEATDAAL 95 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + A +A+ L R +L+ VL + DP N G +LR+A A Sbjct: 96 AGLAETVAPQGLIAVCQHLDLPLATALARAPRLVTVLADIRDPGNAGTVLRTADAAGAQA 155 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG----FQTIGLSSDSK 217 ++ + + ++++G+L H+ +R + + + + G T + D Sbjct: 156 VVFAGTAVDPYNGKVVRASAGSLFHVDVVRAPDPLQVIADLRTAGLAVLATTGYGADDLD 215 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A + G+E GL + A + + + G ++LN++ AAAV LY + Sbjct: 216 DLADAGRLAAPTAWVFGSEAHGLPVELTAAAEARVRVPLHGRAESLNLAAAAAVCLYASA 275 Query: 278 N-HF 280 Sbjct: 276 RAQR 279 >gi|332670241|ref|YP_004453249.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484] gi|332339279|gb|AEE45862.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484] Length = 280 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 62/249 (24%), Positives = 95/249 (38%), Gaps = 12/249 (4%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY + +SRH + AL R LLA + A L Sbjct: 18 ADYVSLTDVALRSRHEPAKGLYIAESSTVLGRALRAGHRPRSVLLAPRWVPDLERMLAEL 77 Query: 88 PHP---FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVL 138 P PV ++ I G LA P L P D ++ + VL Sbjct: 78 PDDGATVPVYVADEPVLEAITGFHVHRGALAAMHRPPLPPVADVLAAARGGAGARRVAVL 137 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 + V D N+GA RSA A D ++ T R + + + G + +P+ RI D Sbjct: 138 EDVVDHTNVGAAFRSAAALGVDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIDPWPDG 197 Query: 199 LQKMHSWGFQTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 ++++ S GF T +++AL+LGAEG GL+P T + + + Sbjct: 198 IEELRSHGFVTASLALADDALTLDELVADPPERLALVLGAEGHGLKPATVAASDLVVRIP 257 Query: 256 MPGIIKALN 264 M G + +LN Sbjct: 258 MAGGVDSLN 266 >gi|22299336|ref|NP_682583.1| SpoU rRNA methylase family [Thermosynechococcus elongatus BP-1] gi|22295519|dbj|BAC09345.1| SpoU rRNA Methylase family [Thermosynechococcus elongatus BP-1] Length = 153 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G I R+ A + L ++ ++ Sbjct: 1 MPAVVLVHPQIPPNTGNIARTCAATQTPLHLIEPLGFELSDRYLKRAGLDYWPYVTLYCH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + L+ H G + + + L+ G+E G+ T Sbjct: 61 PDWPTFLKTAHRHGRLIAFEPAAQQIYW-DFTFAESDWLVFGSEPAGIPADVLATCDVFL 119 Query: 253 HLHM-PGIIKALNVSNAAAVALYITQNHF 280 + M +++LN+S + A+AL Sbjct: 120 KIPMWQPAVRSLNLSVSVAIALMEVYRQL 148 >gi|208779154|ref|ZP_03246500.1| RNA methyltransferase, TrmH family [Francisella novicida FTG] gi|208744954|gb|EDZ91252.1| RNA methyltransferase, TrmH family [Francisella novicida FTG] Length = 250 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 89/259 (34%), Gaps = 15/259 (5%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD 84 + + YK+++ + S+ + + G+ AL P ++I +L T+ A Sbjct: 5 SQKLYKEIKKLH-SSQGRKKSLYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPL 63 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + + + + + L + + ++VLD + DP Sbjct: 64 NKK------YIITEKDFEALSQTQNPQGVL---ILAEKPKLEELSFDDDFILVLDRIQDP 114 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIG ILR+A+A +I + ++ GA + + I+NL + Sbjct: 115 GNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSLKFSYITNLAELKNIAKL 174 Query: 205 WGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + L+ G E G+ + + I++L Sbjct: 175 QQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIESL 231 Query: 264 NVSNAAAVALYITQNHFAK 282 NV+ AA + L+ + Sbjct: 232 NVAQAATIYLFEGLRQRLR 250 >gi|119487746|ref|ZP_01621255.1| RNA methyltransferase TrmH, group 2 [Lyngbya sp. PCC 8106] gi|119455579|gb|EAW36716.1| RNA methyltransferase TrmH, group 2 [Lyngbya sp. PCC 8106] Length = 154 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 1/146 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G + R+ A + + L ++ ++P S++ Sbjct: 4 VVLIQPQIPPNTGNVARTCAATRTELHLVGPLGFEISDRDLRRAGLDYWPYVPLKIHSSI 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 WG + IG S K+ Q L+ G E GL P+ + Sbjct: 64 EAFKHYHQYWGGRWIGFSKRGKQNYAQFQYQADDWLLFGPETTGLSPELLSACDVTTSIP 123 Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280 M +++LN+S + A+ L Sbjct: 124 MREPGVRSLNLSVSVAIGLLEAGRQL 149 >gi|85057856|ref|YP_456772.1| 23S rRNA methyltransferase [Aster yellows witches'-broom phytoplasma AYWB] gi|84789961|gb|ABC65693.1| 23S rRNA methyltransferase [Aster yellows witches'-broom phytoplasma AYWB] Length = 234 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 91/233 (39%), Gaps = 21/233 (9%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + +YG H + A N + + + + P + + Sbjct: 21 YRDLYQQFLVYGDHLIEQAQKNNA--VVAIFTSNEEK-------------PGTFIESSLM 65 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 ++ + V +AL + L ++VLD + DP N+G ++RSA AF + Sbjct: 66 KELSQTKTVFDQMALCKPISENNLLSDK-----ILVLDDIQDPANLGVLMRSASAFGFNQ 120 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 + + + +S+ GAL + R S + + S ++ Sbjct: 121 VFASFHSADFYHEKTIRSSQGALFSLSLKRGSTKSFLEEVKEQNYSIFSAFPQKSNITIK 180 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K+ K L+LG EG+G+ +T+ + ++ +++LNV+ A ++ +Y Sbjct: 181 DAKKHPKKVLVLGNEGQGISSETEGLSDYFVNI-FTQNVESLNVAVAGSILMY 232 >gi|227505968|ref|ZP_03936017.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC 6940] gi|227197490|gb|EEI77538.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC 6940] Length = 123 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D + +++G+EGKG+ +E + + M +++LN S AA L Sbjct: 65 KDPVVIVIGSEGKGISRLVRENCDVIVSIPMTAWVESLNASVAAGAVLSEFARRR 119 >gi|313200342|ref|YP_004039000.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688] gi|312439658|gb|ADQ83764.1| RNA methyltransferase, TrmH family, group 2 [Methylovorus sp. MP688] Length = 164 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 44/146 (30%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I+R + E L ++ E+ N Sbjct: 14 IVLYQPEIPPNTGNIIRLCANTGTRLHLVKPLGFSLEDKQLKRAGLDYHEYANMQVHENW 73 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253 + + + + G E +GL + ++ Sbjct: 74 EACCTALAGRRMFALTTKG--STRHSTIAFQEGDVFVFGPETRGLPEEIRDQFAPDHRVR 131 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN+AAV LY Sbjct: 132 LPMMPNNRSLNLSNSAAVLLYEAWRQ 157 >gi|291405419|ref|XP_002718940.1| PREDICTED: RNA methyltransferase like 1 [Oryctolagus cuniculus] Length = 413 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 41/312 (13%), Positives = 94/312 (30%), Gaps = 49/312 (15%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 Y K R + + + + + L G ++ AL + + Sbjct: 88 LRYDKALPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAAPQVFFFSRLEY 147 Query: 78 LARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLL 135 + L + VK + +V + + + + + P + LL Sbjct: 148 IKELPVEKLKGVRLVKVKFEDIKDWSDLVTPQGIMGIFAKPDYSKMTYPESQRHHSLPLL 207 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++ D++ DP N+G +LRSA C ++ TK + + ++ GA +P I Sbjct: 208 LICDNLRDPGNLGTVLRSAAGAGCSRVLLTKGCVDAWEPKVLRAGMGAHFQVPVINNLEW 267 Query: 196 TDALQKMHSWGFQTI-------------------------------------------GL 212 + + + L Sbjct: 268 EAVPEHLPPNTRVYVADNCGLYAQAHASDKAGVCDPRFLKFHKSKEEVEELENGAGKGWL 327 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKALNVSNA 268 + + + A+++G E G+ ++ A + + + +LN + A Sbjct: 328 PELEVQSYDLDWTEAPAAVVIGGETHGVSLESLWLAERTGGKRLLIPVVPGVDSLNSAMA 387 Query: 269 AAVALYITQNHF 280 A++ L+ + Sbjct: 388 ASILLFEGKRQL 399 >gi|229106374|ref|NP_754987.2| putative methyltransferase [Escherichia coli CFT073] gi|300982304|ref|ZP_07176012.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 45-1] gi|300408791|gb|EFJ92329.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 45-1] gi|315294515|gb|EFU53863.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli MS 153-1] Length = 345 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKGALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|26109353|gb|AAN81555.1|AE016764_237 Hypothetical tRNA/rRNA methyltransferase yfiF [Escherichia coli CFT073] Length = 370 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 126 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKGALRWMAANRKAYHVVDEA 185 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 186 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 244 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 245 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 303 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 304 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 363 Query: 276 TQNH 279 Sbjct: 364 WWRQ 367 >gi|319786089|ref|YP_004145564.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoxanthomonas suwonensis 11-1] gi|317464601|gb|ADV26333.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoxanthomonas suwonensis 11-1] Length = 301 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 58/284 (20%), Positives = 112/284 (39%), Gaps = 15/284 (5%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65 E++ S + + RR + + + + LYG++ V A Sbjct: 23 SGPGERVPSERAPAGERPRRPSAEAPASPGAPPRPARREE---VRLYGLNAVQAVFERRP 79 Query: 66 RKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 + I +L + + L + + + V + +D++ + H+G+ + Sbjct: 80 QAIRKLYLLQARVHALRPLLAWCVQNRVGYRVVENEDLDRLAA-SSHHEGVVADVLRSDP 138 Query: 124 PTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 L+ L + LD V +PHN GAILRSA F ++ +R + + S A Sbjct: 139 LPLEDWLASLAPGAPALALWLDGVGNPHNFGAILRSAAHFGAAVLLP-ERSTLALSGAAA 197 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 + A G E + +R+ AL ++H+ GF + + L ++ ++GAEG Sbjct: 198 RVAEGGAEGVALVRLPGNDAALARLHAAGFASAATVVRDGEDLFAMQPQPRLVYVMGAEG 257 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279 +G+ + G +++LNV+ A AV L + Sbjct: 258 EGMDAGLAGACQHRVSIAGTGAVESLNVAAATAVFLAHWAAARR 301 >gi|239907184|ref|YP_002953925.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio magneticus RS-1] gi|239797050|dbj|BAH76039.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio magneticus RS-1] Length = 196 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 63/151 (41%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L +V+++++DPHN+ AILRS AF + + + S S Sbjct: 20 RQTDLTLVINNIHDPHNVSAILRSCDAFGIHRVHLLYTDTAFPALGKKSSGSAKKWVETV 79 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + A +++ PL++ K A+ILG E G+ Sbjct: 80 RHKDAASLAAALKGQGFRLVATSFTETAVPLQKWDLTTKTAIILGNEHSGVDEDLAPHVD 139 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ M G++++LNVS AAAV LY Sbjct: 140 GALYIPMMGMVQSLNVSVAAAVILYEGFRQL 170 >gi|227495545|ref|ZP_03925861.1| rRNA methyltransferase [Actinomyces coleocanis DSM 15436] gi|226831092|gb|EEH63475.1| rRNA methyltransferase [Actinomyces coleocanis DSM 15436] Length = 304 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 98/261 (37%), Gaps = 13/261 (4%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 L+D ++L DY M +S+ ++ + ++ ALN+ + L++ Sbjct: 36 HLEDLTDSRLT----DYLHMTDVALRSKTETELGLFMAESKNVITRALNSGYQPRSFLMS 91 Query: 74 TKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130 K + + PV + ++ + G +A L D ++ Sbjct: 92 PKWVESMREVLERFGPDAGEVPVFIASEEMLETLTGFHLHRGAMAAMHRLPLPTAADLLK 151 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++ + VL+ + D N+GAI RSA A D ++ T + + + G + +P+ Sbjct: 152 TARRIAVLEDIVDHTNVGAIFRSAAAIGVDAVLVTPSCADPLFRRSVRVSMGTVFQVPWT 211 Query: 191 RISNLTDALQKMHSWGFQ------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 R+ + ++ D ++A +LG+EG GL+ +T Sbjct: 212 RLETWPEPQLFREHGFEVAALALGENTITLDDYTAELATDPARRVAWVLGSEGYGLKERT 271 Query: 245 QETATSMAHLHMPGIIKALNV 265 T + M + +LNV Sbjct: 272 LRTVDKTVMIPMQHGVDSLNV 292 >gi|163796067|ref|ZP_02190029.1| RNA methyltransferase TrmH, group 3 [alpha proteobacterium BAL199] gi|159178526|gb|EDP63066.1| RNA methyltransferase TrmH, group 3 [alpha proteobacterium BAL199] Length = 289 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 92/253 (36%), Positives = 129/253 (50%), Gaps = 12/253 (4%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA------LARLDWDANLPHP 90 + +S + + +YG H V AAL+N R + + T A + Sbjct: 23 STRSTEPAVDDPTLVYGRHAVRAALHNDRRHVVAIRHTVGAGDAMAVFLSELPEPRRRSL 82 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDP 144 + V +D + AVHQGL L+ PL P L R +L+VLD V DP Sbjct: 83 PAPQPVDATELDASLPDGAVHQGLVLKVTPLPDPNLSDLIVAWEGRTDIVLVVLDQVTDP 142 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 HN+GA+LRSA AF ++ R+ P + VLAK ASGAL+ +P +R+ NL AL+ + Sbjct: 143 HNVGAVLRSAAAFGASAVVLQDRHGPPVTGVLAKIASGALDVVPLVRVVNLARALRDLQE 202 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 GF GL+ D L + + A++LGAEG GLR T+ET ++A L I +LN Sbjct: 203 NGFWCTGLAEDGSVDLGRVDLGGRCAIVLGAEGAGLRRLTRETCDALARLPTCPPIGSLN 262 Query: 265 VSNAAAVALYITQ 277 VS AAAVALY + Sbjct: 263 VSAAAAVALYQAR 275 >gi|94499900|ref|ZP_01306436.1| putative tRNA/rRNA methyltransferase [Oceanobacter sp. RED65] gi|94428101|gb|EAT13075.1| putative tRNA/rRNA methyltransferase [Oceanobacter sp. RED65] Length = 229 Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 53/161 (32%), Gaps = 1/161 (0%) Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + R L ++ D V PHN+ AI+RS AF+ + + ++ Sbjct: 7 QRMHDILRKRQPDLTLITDAVFKPHNLSAIIRSCDAFAVNELNV-VWPYDDYQTFRGRAM 65 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 D P A+++GAE G+ Sbjct: 66 GSQQYVNVKTHKDVSQAIQGFKQQGYQIVAAHFCDQAVPHYDIDYTKPTAIVMGAEKNGV 125 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 K + + M G++++LNVS AAA+ L + Sbjct: 126 SAKAMDLVDHSIIVPMEGMVQSLNVSVAAALILSEAMHQRK 166 >gi|295095239|emb|CBK84329.1| rRNA methylases [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 229 Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 56/157 (35%), Gaps = 1/157 (0%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + A R L + ++ V+ PHN+ AI+R+A A + + + +A Sbjct: 10 CEMLARRQPDLTVCMEQVHKPHNVSAIVRTADAVGVHEV-HAVWPGARMRTMASTAAGSN 68 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + S + +++G E G+ + Sbjct: 69 SWVSVKTHQTIGEAVSHLKGRGMQVLATNLSAKAVDFREIDYTRPTCILMGQEKTGITQE 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + M G++++LNVS A+A+ LY Q Sbjct: 129 ALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 >gi|120553328|ref|YP_957679.1| tRNA/rRNA methyltransferase (SpoU) [Marinobacter aquaeolei VT8] gi|120323177|gb|ABM17492.1| tRNA/rRNA methyltransferase (SpoU) [Marinobacter aquaeolei VT8] Length = 242 Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 87/248 (35%), Gaps = 12/248 (4%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 ++ +QK ++ + G H V + L + P P+ Sbjct: 5 DIKKLHQK-KYRQSFGQFLVEGEHLVLELEKAAKQVPH---WRNAQLYVTSAHEHWPSPW 60 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 P + + + ++ LA PL T + + + L V DP N+G IL Sbjct: 61 PKHVISDRQMAQLSDTRTPQGILA--VVPLPPATRGESASREKALYLHEVQDPGNLGTIL 118 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+ F + + + + +++ GA+ H+P L Q+ IG Sbjct: 119 RTLAWFGGFRCLLSPGSVDPFNPKVVRASMGAIFHVPLETEVALDTLGQRYARIACLDIG 178 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAA 270 S +K + + G E +G+ + E + I++LN+++A Sbjct: 179 GDSITKPE-----FQAQDCYLFGNEARGVPKQALTELGAHAYTIPGAAAIESLNLASAVN 233 Query: 271 VALYITQN 278 +A+Y Sbjct: 234 MAVYELNR 241 >gi|329296824|ref|ZP_08254160.1| tRNA guanosine-2'-O-methyltransferase [Plautia stali symbiont] Length = 239 Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R L + ++ V+ PHN+ A++R+A A + S +++ SA Sbjct: 1 MRQHDLTVCMEQVHKPHNVSAVIRTADAVGIHEV-HAVWPSVRMRTMVSASAGSNSWVKV 59 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 SD + +++G E G+ + A Sbjct: 60 KTHRHIADAVRHLKDRGMQVLATHLSDKAVDFREIDYTKPTCILMGKEKTGITAEALALA 119 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + G++++LNVS A+A+ LY Q Sbjct: 120 DRDIIIPIVGMVQSLNVSVASALILYEAQRQR 151 >gi|73967329|ref|XP_853914.1| PREDICTED: similar to RNA methyltransferase like 1 [Canis familiaris] Length = 423 Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 44/320 (13%), Positives = 93/320 (29%), Gaps = 59/320 (18%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 Y K R + + + + + L G ++ AL + + Sbjct: 92 LRYDKALPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKVFFFSRLEY 151 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQ 133 + L D + V + I + + P + P Sbjct: 152 IKELPID--KLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPETQLRHLLP 209 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LL++ D++ DP N+G ILRSA C ++ TK + ++A GA +P I Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDPWEPKVLRAAMGAHFQVPIINNL 269 Query: 194 NLTDALQKMHSWGFQTI------------------------------------------- 210 + + + + Sbjct: 270 DWETLPNYLPTDTRVYVADNCGLYAQAQMSDKASDHGWVCDRRLSKLHKYEEEEEEEDLE 329 Query: 211 ------GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGII 260 L + + + A+++G E G+ ++ + A + + + Sbjct: 330 PGASKAWLPELEVQSYDLDWTEAPAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGV 389 Query: 261 KALNVSNAAAVALYITQNHF 280 +LN + AA++ L+ + Sbjct: 390 DSLNSAMAASILLFEGRRQL 409 >gi|60593966|pdb|1X7O|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes gi|60593967|pdb|1X7O|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes Length = 287 Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 38/282 (13%), Positives = 84/282 (29%), Gaps = 26/282 (9%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 + ++ + +++ Q+ ++ + GV +S A+ + L + Sbjct: 8 RTPAARRITSRNARFQQWQALLGNRNKRTRAGEFLVXGVRPISLAVEHGWPVRTLLYDGQ 67 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQ 133 L++ + P + ++ G++ + + LD + Sbjct: 68 RELSKWARELLRTVRTEQIAXAPDLLXEL-GEKNEAPPEVVAVVEXPADDLDRIPVREDF 126 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-----HIP 188 L ++ D P NIG+I+RSA A G+I + +S++G+L +P Sbjct: 127 LGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVP 186 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ +G + L++G E GL + Sbjct: 187 SPGEVXDWVEARRAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLC 246 Query: 249 TSMAHLHMPG---------IIKALNVSNAAAVALYITQNHFA 281 + G A+ LY Sbjct: 247 DYTVSIPXAGSASSLNAANAA--------TAI-LYEAVRQRI 279 >gi|318041386|ref|ZP_07973342.1| RNA methyltransferase [Synechococcus sp. CB0101] Length = 160 Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 6/151 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G + R+ A + + L ++ + R ++ Sbjct: 4 LVLFQPEIPPNTGNVARTCAATCTELHLIEPLGFEISDRTLKRAGLDYWPWVNLHRHADW 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + G + + LS +P + L+ G E GL + A + + Sbjct: 64 AAFRLEQQRRGGRLLALSRHGSQPYTELTYQPDDWLLFGRETSGLPLEVVADADACLAIP 123 Query: 256 MP------GIIKALNVSNAAAVALYITQNHF 280 MP G +++LN++ AA V L+ Sbjct: 124 MPGSVDHGGGVRSLNLATAAGVVLFEALRQL 154 >gi|154520210|gb|ABS82777.1| RNA methyltransferase [uncultured Methylophaga sp.] Length = 154 Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L + L P N G I+R + + L ++ H Sbjct: 1 MLHIALYEPEIPPNTGNIIRLCANTGAQLHLIEPLAFVLDDKRLRRAGLDY--HEFAPVK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-T-S 250 + A + ++ +K+ Q D+ L+ G E +GL + Sbjct: 59 VHADFAAFQQWQQNRPLFACTTKAKQFHHQATFIDESILLFGPESRGLPATLLDNLPDRQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ LY Sbjct: 119 KIRIPMYPESRSLNLSNATAIILYEAWRQL 148 >gi|83858604|ref|ZP_00952126.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii HTCC2633] gi|83853427|gb|EAP91279.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii HTCC2633] Length = 219 Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 59/152 (38%), Positives = 80/152 (52%), Gaps = 3/152 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 LL+VLD + DPHN+GAILRS AF +I R SP L K+A G E IP Sbjct: 58 PTHGLLVVLDQITDPHNVGAILRSCAAFGVRAVICQDRKSPPFFGALCKTAVGTAETIPQ 117 Query: 190 IRISNLTDALQKMHSWGFQTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 ++++N+ D L + G IG + + L+LGAEG GLRP+ E Sbjct: 118 VQVTNIADTLIALQEAGRHVIGLAGEAEARLGDEIAAHAGPGLVLVLGAEGSGLRPRVAE 177 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +S+A + M ++LNVSNAAA+ALY Sbjct: 178 HCSSLARIPMGPKAESLNVSNAAAIALYEASR 209 >gi|71280430|ref|YP_267533.1| RNA methyltransferase [Colwellia psychrerythraea 34H] gi|71146170|gb|AAZ26643.1| RNA methyltransferase, TrmH family [Colwellia psychrerythraea 34H] Length = 180 Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 60/153 (39%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 L++VLD+V + +NIGA +R A AF+ + +I + S+ + S + A Sbjct: 26 PKIPLIVVLDNVTNSYNIGAFIRLADAFAIEKVIVCGALTISDKKMKKASRNEAKWVCVE 85 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S + + K L+LG E KG+ + + Sbjct: 86 YSDSTTASLQTLLDEGHAIYSVELCHESVDYTKVTYPAKCVLVLGNERKGVSEAALKLSL 145 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 H+ M G+ +LNVS A A+ L N K Sbjct: 146 QQIHIPMFGMGNSLNVSTAGAIVLAECANQIRK 178 >gi|260435545|ref|ZP_05789515.1| tRNA guanosine-2'-O-methyltransferase [Synechococcus sp. WH 8109] gi|260413419|gb|EEX06715.1| tRNA guanosine-2'-O-methyltransferase [Synechococcus sp. WH 8109] Length = 210 Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R + L ++L+HV PHN+ AILRS A + S + Sbjct: 16 NHRMADLTVLLEHVEKPHNLSAILRSCDAVGALEAHAVSFNGRPRTFNSTAQGSQKWVPL 75 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + K + L D+K E + A +LGAE GL + Q+ Sbjct: 76 HDHPDTETAIRHLKAKGFRLYGTHLGVDAKDYRECD-FTGPTAFVLGAEKWGLTDQAQDL 134 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A A L+ Sbjct: 135 MDEALFIPMRGMVQSLNVSVATATLLFEALRQR 167 >gi|284009258|emb|CBA76372.1| tRNA/rRNA methyltransferase [Arsenophonus nasoniae] Length = 331 Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 52/292 (17%), Positives = 94/292 (32%), Gaps = 16/292 (5%) Query: 2 NLISKKKSEKIFSL--KDSHYAKLRRNHRDY-------KKMQSFNQKSRHTSQPENLFLY 52 S ++S++ D A +R K + Q R + +Y Sbjct: 39 KKSSSRRSDRNNERLTDDPWKAISQRRDPVNSHSGISGKSLLDPEQIRRQRLEETR--IY 96 Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVG---K 107 G H A + I + ++ + V + + K G Sbjct: 97 GEHACQAMFKHRPEAIVRAWFVQSITPHFRDALKWMAANRKAYHVVNEEELIKASGTEHH 156 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 V + T L ++ ++ + +PHN+GAI+RS F GII Sbjct: 157 GGVCFLIKKRTGLDAEAYLAQSNKIDCVLAVEDIGNPHNLGAIMRSCAHFGVQGIILHDT 216 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + + + +A GA + T + H+ + + + + + Sbjct: 217 AAMESGSAVRTAAGGAEYIKGIQSDNFATTLNKFRHAGYIIVTTSNHKDNIDIAKAVLPE 276 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 KI L+L E GL + + G +K+LNVS AA + L Sbjct: 277 KIVLLLEQESDGLTASLCQKGDMSLSIGGTGQVKSLNVSVAAGIILAKWWQQ 328 >gi|300775607|ref|ZP_07085468.1| tRNA/rRNA methyltransferase [Chryseobacterium gleum ATCC 35910] gi|300505634|gb|EFK36771.1| tRNA/rRNA methyltransferase [Chryseobacterium gleum ATCC 35910] Length = 226 Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 63/158 (39%), Gaps = 1/158 (0%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + +L V++ V N AI+RS A ++ + E + + Sbjct: 27 HFSKESSDFVLPVVEDVYQFRNAAAIVRSVEACGFHKVVALQEEYSFEPNLRVTKGADTW 86 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + + + K + + L ++K E E+ + IAL+ G E +G+ + Sbjct: 87 VEVEKLPRNMESFQNIKDRRYKIVAVSLEKNAKMLPEYEV-TEPIALVFGTEMEGVSQEI 145 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + A + M G ++ NVS AA++ +Y + K Sbjct: 146 LDFADETLAIPMYGFTRSFNVSVAASICMYELKQKLIK 183 >gi|330872262|gb|EGH06411.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] Length = 60 Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 25/48 (52%) Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G EGKG+R T+E + L M G + +LNVS A V L+ + Sbjct: 5 GEEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 52 >gi|323700776|ref|ZP_08112688.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. ND132] gi|323460708|gb|EGB16573.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans ND132] Length = 196 Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 59/151 (39%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +V+D++ DPHN+ A+LRS AF G+ S L S S Sbjct: 20 RQKDLTLVMDNIWDPHNVSAVLRSCDAFGVAGVHLYYTDSQWPDLALKSSGSATKWVERT 79 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + SDS +P+ A+IL E +G P Sbjct: 80 EHVDAAEMVAELKGRGMRVLRTGFSDSARPVMDFDFTKPTAIILSNEHRGTSPDLAALVP 139 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ M G++++ NVS AAA+ LY Sbjct: 140 DEIYIPMQGMVQSFNVSVAAAIILYQAFTQR 170 >gi|3687231|gb|AAC62129.1| hypothetical protein [Arabidopsis thaliana] Length = 577 Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 74/321 (23%), Positives = 126/321 (39%), Gaps = 53/321 (16%) Query: 8 KSEKIFSLKDSHYAKLR-RNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTV 57 + +I + + + + + R+ Y+ R T Q E +YGV V Sbjct: 251 RWSEIKNRFNRYDVRDQGRDDAAYRNWNRQESWGRKTWQEATESSVPRLEGEVVYGVSPV 310 Query: 58 SAALNNPSRKIFQLLATKNALARLDWDANLPH-------------PFPVKTVPPQTIDKI 104 AAL+ R+ + L + + +K ++ + Sbjct: 311 LAALSVGRREFYALYVQEGLDLSSNNRKKKDKKGFERVLKISEKLGLNIKETSKHDLN-M 369 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V HQGL L+ +PL + L + LD V DP N+GAI+RSA F Sbjct: 370 VADNRPHQGLVLDASPLELVKVKELDPISSEEEKYSLWVALDEVTDPQNLGAIIRSAYFF 429 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G++ + S SAV++K+++G+LE + N+ L+ G++ +G S K Sbjct: 430 GATGVVVCAKNSAPLSAVVSKASAGSLEVMELRYCKNMMQFLEASAENGWRVVGGSVSPK 489 Query: 218 KPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHL--HMPGI--------------- 259 E+ L+LG EG GLRP + + T + + +MP Sbjct: 490 AVALNEVLPGSPTILVLGNEGTGLRPLVERSCTDLVRISGNMPNEVAVTESDDAEGEGFR 549 Query: 260 ----IKALNVSNAAAVALYIT 276 +++LNVS AA + L+ Sbjct: 550 SFLAVESLNVSVAAGLFLHHL 570 >gi|56419019|ref|YP_146337.1| rRNA methylase [Geobacillus kaustophilus HTA426] gi|261418815|ref|YP_003252497.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. Y412MC61] gi|297531223|ref|YP_003672498.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. C56-T3] gi|319765631|ref|YP_004131132.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. Y412MC52] gi|56378861|dbj|BAD74769.1| rRNA methylase [Geobacillus kaustophilus HTA426] gi|261375272|gb|ACX78015.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. Y412MC61] gi|297254475|gb|ADI27921.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. C56-T3] gi|317110497|gb|ADU92989.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. Y412MC52] Length = 157 Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + ++ +L ++ ++ Sbjct: 1 MPLHVVLYQPEIPANTGNIARTCAATDTSLHLIRPLGFSTDDKMLKRAGLDYWPYVNISY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQE-TAT 249 +L + + F I +K + G E GL + E Sbjct: 61 YDSLDELFARFPEGEFYFITKFGRRYYDSFDFSDTEKHIFFVFGRETTGLPKELLEANMD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 121 RCLRIPMNDKVRSLNLSNTAAILVYEALRQ 150 >gi|30680811|ref|NP_849992.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] gi|20336661|gb|AAM19346.1|AF499436_1 hypothetical protein [Arabidopsis thaliana] gi|17065308|gb|AAL32808.1| Unknown protein [Arabidopsis thaliana] gi|330251842|gb|AEC06936.1| tRNA/rRNA methyltransferase (SpoU)-like protein [Arabidopsis thaliana] Length = 589 Score = 86.8 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 74/321 (23%), Positives = 126/321 (39%), Gaps = 53/321 (16%) Query: 8 KSEKIFSLKDSHYAKLR-RNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTV 57 + +I + + + + + R+ Y+ R T Q E +YGV V Sbjct: 263 RWSEIKNRFNRYDVRDQGRDDAAYRNWNRQESWGRKTWQEATESSVPRLEGEVVYGVSPV 322 Query: 58 SAALNNPSRKIFQLLATKNALARLDWDANLPH-------------PFPVKTVPPQTIDKI 104 AAL+ R+ + L + + +K ++ + Sbjct: 323 LAALSVGRREFYALYVQEGLDLSSNNRKKKDKKGFERVLKISEKLGLNIKETSKHDLN-M 381 Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 V HQGL L+ +PL + L + LD V DP N+GAI+RSA F Sbjct: 382 VADNRPHQGLVLDASPLELVKVKELDPISSEEEKYSLWVALDEVTDPQNLGAIIRSAYFF 441 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G++ + S SAV++K+++G+LE + N+ L+ G++ +G S K Sbjct: 442 GATGVVVCAKNSAPLSAVVSKASAGSLEVMELRYCKNMMQFLEASAENGWRVVGGSVSPK 501 Query: 218 KPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHL--HMPGI--------------- 259 E+ L+LG EG GLRP + + T + + +MP Sbjct: 502 AVALNEVLPGSPTILVLGNEGTGLRPLVERSCTDLVRISGNMPNEVAVTESDDAEGEGFR 561 Query: 260 ----IKALNVSNAAAVALYIT 276 +++LNVS AA + L+ Sbjct: 562 SFLAVESLNVSVAAGLFLHHL 582 >gi|323497036|ref|ZP_08102059.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sinaloensis DSM 21326] gi|323317880|gb|EGA70868.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sinaloensis DSM 21326] Length = 227 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 2/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A I + + SA Sbjct: 16 RQADLTLCLEEVHKPNNVSAVIRTADATGIHKIHAV--WPNEMRTLSHTSAGARNWVDVE 73 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S + + SDS Q A+ILG+E G + ++ A Sbjct: 74 THDSIEEAISELKSQGMQVLVTNLSDSAVDFRQIDYTKPTAIILGSEKIGASEQAKKLAD 133 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+AV LY Q Sbjct: 134 QDIIVPMVGMVQSLNVSVASAVILYEAQRQR 164 >gi|16126553|ref|NP_421117.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|221235335|ref|YP_002517772.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000] gi|13423835|gb|AAK24285.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|220964508|gb|ACL95864.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000] Length = 268 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 41 RHTS---QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTV 96 + + G + A + +++ LL +L LP P+ Sbjct: 22 KERDLVGREGLFIAEGETVLRAFTRDAPQRVVSLLIDPKRREKLADVFAGLPEFTPIYLA 81 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLL---SPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 +D I G LA+ P L ++ +++VL + + N+G I R+ Sbjct: 82 EQGVLDAIAGFHLHRGILAVGRKPPAVAARDLLASLPARAMVLVLCGIANHDNMGGIYRN 141 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF D I+ + + GA+ +P R+S + + GF+ + LS Sbjct: 142 AAAFGADAIVLDADCCDPLYRKAIRVSVGAVLSVPTARLSRDESIADLLDATGFEGLALS 201 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + L + A++LG EG GL P A + M +LNV+ + + L Sbjct: 202 PSADEILATLKPAARTAVLLGTEGPGLSPDVMARA-RRIGIPMANSFDSLNVATTSGIVL 260 Query: 274 YITQ 277 + + Sbjct: 261 HHLR 264 >gi|149189234|ref|ZP_01867521.1| tRNA guanosine-2'-O-methyltransferase [Vibrio shilonii AK1] gi|148836988|gb|EDL53938.1| tRNA guanosine-2'-O-methyltransferase [Vibrio shilonii AK1] Length = 228 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L ++L+ V+ P+N+ A++R+A A + + SA Sbjct: 16 RQPDLTLLLEQVHKPNNVSAVIRTADAAGVHKV-HAVWPDEKMRTLSHTSAGARNWVEVE 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + S++ A+ILG E G+ A Sbjct: 75 THDTVADAVRTLKSQGMQVLATNLSENAVDFRDIDYTKPTAIILGGEKHGITQDALTEAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+A+ L+ Q Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILFEAQRQR 165 >gi|254422130|ref|ZP_05035848.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] gi|196189619|gb|EDX84583.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] Length = 161 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 2/146 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL + P N G I R+ A + L ++ ++ ++ Sbjct: 4 IVLVNPEIPPNTGNIARTCAATETPLHLVMPLGFELSDRYLKRAGLDYWPYVDLHIHQSI 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 D Q + G + IG S+ + Q L+ G E KGL + E + + Sbjct: 64 EDFWQHAQAKGGKLIGYSAKATAVYTQLTYRRDDWLLFGCESKGLSAEVLEQCDVVTTIP 123 Query: 256 MPGI--IKALNVSNAAAVALYITQNH 279 M +++LN+S AAV L+ Sbjct: 124 MSDRRHVRSLNLSVCAAVGLFEAIRQ 149 >gi|325111023|ref|YP_004272091.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces brasiliensis DSM 5305] gi|324971291|gb|ADY62069.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces brasiliensis DSM 5305] Length = 278 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 65/275 (23%), Positives = 106/275 (38%), Gaps = 22/275 (8%) Query: 26 NHRDYKKMQSFNQKSRHTSQP----ENLFLY--GVHTVSAALNNPSRKIFQLLATKN--A 77 + K ++ E+ +L H++ AA+ + + +L+ Sbjct: 3 DKSRKKSKTKLQRRPAARRPEPAVEESPWLELKNPHSIRAAMTHRPEDVKELVFLNEPAG 62 Query: 78 LARLDWDANLPHPFPVKTV-------PPQTIDKIVGKEAVHQGLALETAPLLSPTLD--- 127 L + PV+ + K KE AP LD Sbjct: 63 LWNRLIEMAEAAKIPVRHLGQTDEQQERARKQKKGKKEERKGHSYALVAPRQPQKLDDLL 122 Query: 128 ----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + + LD + DPHN+GAI RSA F GII TK S +A + +A+G Sbjct: 123 QLPVPEGRQGIWLALDSLQDPHNVGAIFRSASFFGVMGIIATKNSSAPINATVYDTAAGG 182 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 +E IP+ +NL AL+ G +G S ++K + + + +++G E KGLR Sbjct: 183 VEDIPFAVETNLNRALKLSRRVGLWNLGTSEHAEKSVWEVDQKRPWMIVVGNEQKGLRRL 242 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 E + + G +LNVS AA + L + Sbjct: 243 VLEHCDQICQVPPLGETSSLNVSVAAGILLAALRR 277 >gi|323139053|ref|ZP_08074112.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242] gi|322395713|gb|EFX98255.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242] Length = 158 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 21/58 (36%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L++G E G+ A + M ++LNV+ +AA+ L Sbjct: 98 CAYQPGDVLLVGRESAGVPDDVFAAADITVRIPMRPGARSLNVAVSAAIVLSEALRQL 155 >gi|89095094|ref|ZP_01168021.1| rRNA methylase SpoU [Oceanospirillum sp. MED92] gi|89080655|gb|EAR59900.1| rRNA methylase SpoU [Oceanospirillum sp. MED92] Length = 238 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 1/153 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L ++ D VN P N+ A++R+ A I T + S Sbjct: 16 RQPDLSLIADQVNKPRNLSALVRNCDAVGIHSIHTVVPKEGYRTYRGTAKGSDYYVKSRA 75 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ + SD + AL++GAE +G+ + + Sbjct: 76 HESVENAISVVRQQGMKVVAAH-FSDKAIDYREFDFTQPCALLMGAEKQGVSDVAAQMSD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + M G++ +LNVS AA + L Q+ K Sbjct: 135 AHVVIPMMGMVSSLNVSTAAGIILVEAQHQRLK 167 >gi|260565194|ref|ZP_05835678.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260565921|ref|ZP_05836391.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261758764|ref|ZP_06002473.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] gi|260151262|gb|EEW86356.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260155439|gb|EEW90519.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261738748|gb|EEY26744.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] Length = 242 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 101/236 (42%), Gaps = 10/236 (4%) Query: 45 QPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTI 101 + + G V L ++ + LL +N L L LP PV +VP + Sbjct: 3 RQQRFIAEG-KVVLNVLFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIM 61 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 D + G VH+G+ P L + L++VL +++ N+G+I R+A AF Sbjct: 62 DAVAGFH-VHRGILAVGRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAF 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D ++ + + + GA +PY + D + GF + L+ + Sbjct: 121 EADCVLMDETCCDPLYRKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAP 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + ++ AL+LG EG+GL + E A + M +LNV+ A+ +AL Sbjct: 181 RSIYEATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 235 >gi|116072278|ref|ZP_01469545.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. BL107] gi|116064800|gb|EAU70559.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. BL107] Length = 229 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R + L ++L+HV PHN+ AILRS A + S + Sbjct: 16 NHRMADLTVLLEHVEKPHNLSAILRSCDAVGALEAHAVSFSGRPRTYNSTAQGSQKWVPL 75 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + K + L ++++ + + A +LGAE GL + ++ Sbjct: 76 NDHPDIETAIKVLKAKGFRLYGTHLGTNARDYRDCD-FTGPTAFVLGAEKWGLSDQARDL 134 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A A L+ + Sbjct: 135 MDEALFIPMRGMVQSLNVSVATATLLFESLRQR 167 >gi|78185144|ref|YP_377579.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9902] gi|78169438|gb|ABB26535.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9902] Length = 229 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R + L ++L+HV PHN+ AILRS A + S + Sbjct: 16 NHRMADLTVLLEHVEKPHNLSAILRSCDAVGALEAHAVSFSGRPRTYNSTAQGSQKWVPL 75 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + K + L +++K + + A +LGAE GL + ++ Sbjct: 76 NDHPDIETAIKVLKAKGFRLYGTHLGTNAKDYRDCD-FTGPTAFVLGAEKWGLSDQARDL 134 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A A L+ + Sbjct: 135 MDEALFIPMRGMVQSLNVSVATATLLFESLRQR 167 >gi|74224181|dbj|BAE33706.1| unnamed protein product [Mus musculus] Length = 321 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 24/222 (10%) Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQ 133 PV Q +D + G + VHQG+ +E +PL D Q Sbjct: 85 ELLRVAEARGIPVLRPRRQKLDALCGYQ-VHQGVCMEVSPLRPRPCDEAADTSSGDDPQQ 143 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL+ + DP N+GA++RSA D +IT++R S + V++K+++GA+E + Sbjct: 144 LWLVLEGLQDPRNLGAVMRSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATP 203 Query: 194 NLT------------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 +L + G + S + + + L+LG+EG GL Sbjct: 204 DLPGFLQAKAPAGGGSWWAQWGCPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGSGLS 263 Query: 242 PKTQETATSMAHL-H---MPGIIKALNVSNAAAVALYITQNH 279 + + + + +P +++LNVS A + L+ + Sbjct: 264 QEVFASCQLLLTILPRRHLPPGLESLNVSVATGILLHSICSQ 305 >gi|298528451|ref|ZP_07015855.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira thiodismutans ASO3-1] gi|298512103|gb|EFI36005.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira thiodismutans ASO3-1] Length = 153 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 53/147 (36%), Gaps = 1/147 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VL P N GAI R A + + L ++ EH+ Sbjct: 1 MHIVLYQPRIPPNTGAIARLCAATRTPLHLVGPLGFSLDDKYLKRAGLDYWEHVELTLWK 60 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 N + Q + + + + + LILG E GL K A + Sbjct: 61 NWEEYRQNLDKSHRLIMTSARQGADYTRHS-YSFQDHLILGPETWGLPEKITSQADHLIR 119 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 + + G +++LN+SNAA + LY Sbjct: 120 IPIWGEVRSLNLSNAAGIILYEGYRQL 146 >gi|254432253|ref|ZP_05045956.1| RNA methyltransferase, TrmH family, group 3 [Cyanobium sp. PCC 7001] gi|197626706|gb|EDY39265.1| RNA methyltransferase, TrmH family, group 3 [Cyanobium sp. PCC 7001] Length = 229 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 56/153 (36%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R + L ++L+HV PHN+ AILRS A + S + Sbjct: 16 NRRMADLTVLLEHVEKPHNLSAILRSCDAVGVLEAHAVCLKGRLPTFNSTAQGSQKWVPL 75 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + + LS+++ + A +LGAE GL P+ Sbjct: 76 HRHPSAAAALQSLREQGFRLYGTHLSAEAVDYRSCD-FTGPTAFVLGAEKWGLSPECAGL 134 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A A L+ Sbjct: 135 VDQAIVIPMSGMVQSLNVSVATATLLFEALRQR 167 >gi|113953546|ref|YP_729908.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9311] gi|113880897|gb|ABI45855.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9311] Length = 229 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R + L ++++HV+ PHN+ AILRS A S + S + Sbjct: 16 NQRMANLTVLVEHVDKPHNLSAILRSCDAVGVLEAHAVSLSGRSRTYNSTAQGSQRWVPL 75 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 K + LS D+ + + A +LGAE GL + Sbjct: 76 HSHPNIEEAVKTLKDRGFHLYGTNLSVDALDYRDCD-FTGPTAFVLGAEKWGLSENATKL 134 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G++++LNVS A A L+ Sbjct: 135 MDTDVFIPMRGMVQSLNVSVATATLLFEALRQR 167 >gi|88813043|ref|ZP_01128285.1| RNA methyltransferase, TrmH family, group 2 [Nitrococcus mobilis Nb-231] gi|88789676|gb|EAR20801.1| RNA methyltransferase, TrmH family, group 2 [Nitrococcus mobilis Nb-231] Length = 169 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 58/162 (35%), Gaps = 4/162 (2%) Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 ++ +L V + L +VL P N G ++R + + L ++ Sbjct: 1 MIEHSLTDVNATLLHVVLLEPEIPANTGNVIRLCANTGMRLHLIHPLGFYMDDRRLRRAG 60 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 E+ + + + S+ ++ AL+ G+E +GL Sbjct: 61 LDYREYARVEEHAGYAAFCRTVQPMRIFAFSASA--RRIFHAVRFQPGDALLFGSESRGL 118 Query: 241 RPKTQETAT--SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 P E ++ L M ++LN+SNA AVA++ Sbjct: 119 PPNLLEAFDPKAVLRLPMVPGNRSLNLSNAVAVAVFEAWRQL 160 >gi|313904294|ref|ZP_07837672.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6] gi|313470844|gb|EFR66168.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6] Length = 283 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 84/255 (32%), Gaps = 17/255 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-----ARLD 82 R Y +M + + ++ AL+ + L + Sbjct: 14 RIYSEMTEPELRHYYEPNGGIFIAESPKVIARALDAGCEPVSVLADRREIEAGREGNEAA 73 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 PV + + +I G L P L + R+ + ++ L+ V Sbjct: 74 DILRRCSDVPVYVAEEKVLSRITGFRLTRGMLCAMRRPSLPGMEELCRDKRRIVFLEDVV 133 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 +P N+GAI RSA A + ++ T S A+ + G + IP+ ++ Sbjct: 134 NPTNVGAIFRSAAALGMEAVVLTPGSSDPLYRRAARVSMGTVFQIPWTYSPAPASLPREE 193 Query: 203 HSWGFQ------------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + + +K+A++LG EG GL K+ ET Sbjct: 194 WPQAGIRRLKELGFVTAAMALRNDTVSIDDPVFDRTEKLAVVLGTEGDGLAAKSMETCDY 253 Query: 251 MAHLHMPGIIKALNV 265 + M + +LNV Sbjct: 254 TIKIPMTHGVDSLNV 268 >gi|189911203|ref|YP_001962758.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775879|gb|ABZ94180.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 257 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 104/243 (42%), Gaps = 18/243 (7%) Query: 49 LFLYGVHTVSAALNN--------PSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPP 98 L+G L + + I +++ LP+ TV Sbjct: 7 EILFGKRNFFEFLESLEQMAPERGIKTIREVIVKDGIGNEEKQRIKAYLPNSVKFTTVSA 66 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL-------MVLDHVNDPHNIGAIL 151 + +D+I + + + T +L + Q + ++LD + DP N+G +L Sbjct: 67 RELDRIAQDKNHQGYVIIRTKQKSYLSLGFEQFKQNIKPNEGPVLILDRIQDPGNLGNLL 126 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A ++ + R + + V+ K ++GA+ HI R++NL + + + + Sbjct: 127 RTAECMGVKHVLMSDRDTSPITPVVEKVSAGAIHHIQIYRVANLKHGIDFLKKNEYWILA 186 Query: 212 LSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + ++ + + + + ++A+I+G EG+G++ E A +A + + G + +LNV A Sbjct: 187 TDEEGEEGIWETLPDVSQMAVIMGNEGEGVKRILLEDADYVARIPLYGAVTSLNVVVACG 246 Query: 271 VAL 273 + L Sbjct: 247 ITL 249 >gi|152993149|ref|YP_001358870.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1] gi|151425010|dbj|BAF72513.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1] Length = 258 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 95/231 (41%), Gaps = 5/231 (2%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + V+ + + I + A + + PV V P+T+ + Sbjct: 27 KDGSFIADSPKVVNLLIESGVE-IKSIFAAQEYYDTYRDFLA-NYTIPVAYVAPKTVLEQ 84 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 + +H + + TLDA+ N +++LD +++ NIG+I RSA A ++ Sbjct: 85 IVGHRLHHNVMMHGVRPKESTLDALGNH--IIMLDEISNTDNIGSIARSAAALDVGSLLL 142 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQE 223 ++ + + + G + + + R N+ + +QK+ + PL Q Sbjct: 143 PRQGPHPYARRALRVSMGHIGKLKFHRYDNIKETIQKLKKMGYRIFAAEVTKDSTPLSQV 202 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K AL++G E G+ + + + M IK+ NV+ AA++ +Y Sbjct: 203 RVPGKWALLMGHEQLGISDEILALCDEVVTIEMEEGIKSFNVAVAASIMMY 253 >gi|50123235|ref|YP_052402.1| putative RNA-methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|49613761|emb|CAG77212.1| putative RNA-methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 154 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R C + E L ++ H Sbjct: 1 MFHIALYEPQIAPNTGNIIRLVANNGCMLHLIEPLGFDFEEKKLRRAGLDY--HDLANVS 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 + G + ++ +P +Q L+ G+E GL + + + Sbjct: 59 RHKNYQDFLAAVPGKRIFACTTKGSRPYDQPTYQPGDVLLFGSETSGLPDEIRNGFESDF 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ Y Sbjct: 119 RIRIPMQSDSRSLNLSNAVAIISYEAWRQ 147 >gi|148240118|ref|YP_001225505.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 7803] gi|147848657|emb|CAK24208.1| tRNA (Guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 7803] Length = 229 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 54/153 (35%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R + L ++++HV PHN+ AILRS A + S + Sbjct: 16 NQRMADLTVLVEHVEKPHNLSAILRSCDAVGVLEAHAVSFSGRPRTFNSTAQGSQRWVPL 75 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 K + L D++ + + A +LGAE GL + Sbjct: 76 RDHATIASAVHHLKDRGFKLYGTNLGVDARDYRDCD-FTGPCAFVLGAEKWGLTEEATGL 134 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A A L+ Sbjct: 135 MDQAVFIPMRGMVQSLNVSVATATLLFEALRQR 167 >gi|323489458|ref|ZP_08094687.1| putative rRNA methylase (SpoU class) [Planococcus donghaensis MPA1U2] gi|323396952|gb|EGA89769.1| putative rRNA methylase (SpoU class) [Planococcus donghaensis MPA1U2] Length = 157 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I RS + ++ +L ++ EH+ Sbjct: 1 MAIHIVLYQPLIPANTGNIARSCAGTGVKLHLIRPLGFSTDDKMLKRAGLDYWEHVDIHY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQETA-T 249 L + + + F I +K + G E KGL + E Sbjct: 61 YDGLQELFDRYKNGAFYYITKFGAKTHTSYDYSDREKDHFFVFGQETKGLPKELIEQNPD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN A++ +Y Sbjct: 121 FCLRIPMNDNIRSLNLSNTASILMYEALRQ 150 >gi|296133845|ref|YP_003641092.1| RNA methyltransferase, TrmH family, group 2 [Thermincola sp. JR] gi|296032423|gb|ADG83191.1| RNA methyltransferase, TrmH family, group 2 [Thermincola potens JR] Length = 152 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 K + +++ KK + L+ G E GL + Sbjct: 50 YWHLLDIRYYENFQELKAKYPASRFYYVTTKGKKFYTDVPYSADDFLVFGKETAGLPKEL 109 Query: 245 QE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E A + M +++LN+SN+ A+ LY Sbjct: 110 LEENAEFCIRIPMINNVRSLNLSNSVAIVLYEAWRQ 145 >gi|160937817|ref|ZP_02085176.1| hypothetical protein CLOBOL_02709 [Clostridium bolteae ATCC BAA-613] gi|158439256|gb|EDP17009.1| hypothetical protein CLOBOL_02709 [Clostridium bolteae ATCC BAA-613] Length = 168 Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I R+ VA + L ++ + + Sbjct: 1 MMNIVLLEPEMPSNTGNIGRTCVATQTRLHLIEPLGFKLNEKALKRAGLDYWDKLDVTVY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 S+ D L++ ++ ++K L+ G E G+ + Sbjct: 61 SDYKDFLERNPQASGNMYFATTKARKVYSDVTYGPDCYLMFGRESAGIPEEILVHNEDHC 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G I++LN+SN+AA+ LY Sbjct: 121 IRIPMWGDIRSLNLSNSAAIVLYEALRQ 148 >gi|47458982|ref|YP_015844.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K] gi|47458310|gb|AAT27633.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K] Length = 230 Score = 86.4 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 95/227 (41%), Gaps = 7/227 (3%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G +++ A+ N +I ++ + V+ QT++++V + Sbjct: 7 GKNSIREAIEN-KVEIKKIFLINKKDYESIY-----KDIIVEYTNLQTLNELVKTNHQNI 60 Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 L+ S + +++LDH+ D N G+ILRSA AF + II + S Sbjct: 61 VAELKEFNYFSLENIIKDKADKVLILDHIQDSFNFGSILRSANAFGWNYIIIPSKRSVEI 120 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIAL 231 + V K +SG ++ I+I +L A+ + GF G ++ ++ N I L Sbjct: 121 NDVALKVSSGGFYNVKIIKIDSLIVAINFLKEHGFWIYGSMLDENSFEIKNAPINFPIGL 180 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 I+G E GL + + M G +++LN + A + L+ Sbjct: 181 IIGNEHSGLSKTMINSLDVKVKIMMSGTVQSLNAAVATGILLHDLSK 227 >gi|326797288|ref|YP_004315108.1| tRNA/rRNA methyltransferase (SpoU) [Marinomonas mediterranea MMB-1] gi|326548052|gb|ADZ93272.1| tRNA/rRNA methyltransferase (SpoU) [Marinomonas mediterranea MMB-1] Length = 256 Score = 86.0 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 91/257 (35%), Gaps = 31/257 (12%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSA---------ALNNPSRKIFQLLATKNALARLD 82 ++ +QK ++ + + + G H V ALN K++ A ++ R + Sbjct: 21 NVKKLHQK-KYRQELGHCLVEGEHLVLELEKAAQNNPALNAS--KLYVTPAYQDWSTRFE 77 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + V + + I G QG+ + + L + Sbjct: 78 K----------QDVTERQMATIAG-TKTPQGILAVVPMAAIQPEQNNTLAA--VYLHEIQ 124 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ILRS F + + + + +S+ GA+ H+P ++ ++ Sbjct: 125 DPGNLGTILRSLAWFGGVRCLLSPGSVDPFNPKVIRSSMGAVFHVPMELDVSIDTLPERF 184 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIK 261 G + S I G E +G+ E + + G+I+ Sbjct: 185 AKIGCLDMDGEPLSSPE-----FKACDCYIFGNEARGVPRDKLEALNAKPFTIPGVGLIE 239 Query: 262 ALNVSNAAAVALYITQN 278 +LN++ A +++Y Q Sbjct: 240 SLNLATAVNLSIYERQR 256 >gi|91224994|ref|ZP_01260253.1| tRNA methyltransferase [Vibrio alginolyticus 12G01] gi|91190240|gb|EAS76510.1| tRNA methyltransferase [Vibrio alginolyticus 12G01] Length = 227 Score = 86.0 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 2/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L + L+ V+ P+N+ A++R+A A + + + SA Sbjct: 16 RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVHAI--WPDKMRTLSHTSAGARNWVEVD 73 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S T + + SD+ + A+ILG+E G + ++ A Sbjct: 74 THDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTRPTAIILGSEKVGASEQAKQLAE 133 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A+AV LY Q Sbjct: 134 QDIIIPMVGMVQSLNVSVASAVILYEAQRQR 164 >gi|78212346|ref|YP_381125.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9605] gi|78196805|gb|ABB34570.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9605] Length = 229 Score = 86.0 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 57/153 (37%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R + L ++L+HV PHN+ AILRS A + S + Sbjct: 16 NHRMADLTVLLEHVEKPHNLSAILRSCDAVGALEAHAVSFDGRPRTFNSTAQGSQKWVPL 75 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + K + L D+K E + A +LGAE GL + ++ Sbjct: 76 HDHPDTETAIRHLKGEGFRLYGTHLGVDAKDYRECD-FTVPTAFVLGAEKWGLTDQARDL 134 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A A L+ Sbjct: 135 MDEALFIPMRGMVQSLNVSVATATLLFEALRQR 167 >gi|307154692|ref|YP_003890076.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC 7822] gi|306984920|gb|ADN16801.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC 7822] Length = 155 Score = 86.0 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 1/146 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL H P N G I R+ A + + + L ++ + NL Sbjct: 4 VVLVHPQIPPNTGNIARTCAATATELHLVGPLGFQISDRYLKRAGLDYWPLVSLYYHPNL 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 D L +G + IG S + + L+ G+E +GL + + ++ Sbjct: 64 EDFLTIHQKFGGRLIGFSVSGHQSYLEYSFKSDDWLLFGSETQGLPANLLTSCDATVYIP 123 Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280 M +++LN+S + AV L+ + Sbjct: 124 MMEPKVRSLNLSVSVAVGLFEAKRQL 149 >gi|254429253|ref|ZP_05042960.1| RNA methyltransferase, TrmH family [Alcanivorax sp. DG881] gi|196195422|gb|EDX90381.1| RNA methyltransferase, TrmH family [Alcanivorax sp. DG881] Length = 230 Score = 86.0 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 55/151 (36%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +++D V+ PHNI AI+R+ A + + + A S + Sbjct: 16 RQPDLTVIMDGVHKPHNIAAIVRTCDAVGILDVHAVLPKNRARMAAGTAMGSQRWVQVHK 75 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S + L SD P + AL+LG E G+ + Sbjct: 76 RDESTDVIRELQGQGVQVLAAHL-SDDAIPYREVDYTRPTALLLGTEKFGVSDEVASVVD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++ NVS AAA+ L Sbjct: 135 QNVTIPMMGMVESFNVSVAAAIILSEACEQR 165 >gi|82545036|ref|YP_408983.1| methyltransferase [Shigella boydii Sb227] gi|81246447|gb|ABB67155.1| conserved hypothetical protein [Shigella boydii Sb227] gi|320186384|gb|EFW61118.1| putative methyltransferase [Shigella flexneri CDC 796-83] gi|332092607|gb|EGI97679.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella boydii 3594-74] Length = 345 Score = 86.0 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 91/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G E + I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAELVQSITGDNIVNVLDDFRQAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|224373768|ref|YP_002608140.1| tRNA guanosine-2'-O-methyltransferase [Nautilia profundicola AmH] gi|223589277|gb|ACM93013.1| tRNA guanosine-2'-O-methyltransferase [Nautilia profundicola AmH] Length = 209 Score = 86.0 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 53/160 (33%), Gaps = 2/160 (1%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 + R + L + +D+V HN+ AI+R+ A + + R+ + Sbjct: 11 KMKNILNTRQNTLRVFMDYVFSSHNLSAIVRTCDAVNVGKLYY--RHQRKVRLNNDITMG 68 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 + L + + ++LG E G Sbjct: 69 AHKWIFHEYVEDIEEFYKNIKKEGYQVVVTLLDEETVDFREVDYTKPTLIVLGNEVDGAS 128 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + A + M G+ ++LNVS A AV LY Q A Sbjct: 129 DISIKYADKKVIIPMYGMSQSLNVSVANAVILYEAQRQRA 168 >gi|254430454|ref|ZP_05044157.1| methyltransferase of 23S rRNA [Cyanobium sp. PCC 7001] gi|197624907|gb|EDY37466.1| methyltransferase of 23S rRNA [Cyanobium sp. PCC 7001] Length = 378 Score = 86.0 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 66/201 (32%), Positives = 101/201 (50%), Gaps = 8/201 (3%) Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVL 138 V+ V + ++ G AVHQG+ L+TA + L + + LLM L Sbjct: 14 AKSSGVLVEEVTWARLGQLTG-GAVHQGIVLQTAAAETLDLPSLIEGCRGIGEPPLLMAL 72 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 D + DPHN+GAI RSA A G++ +R S + +AK A+GALEH+P R+ NL A Sbjct: 73 DGITDPHNLGAIARSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRA 132 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L + G++ IGL+S+ LEQ + ++ G+E GL T++ + + + G Sbjct: 133 LDSLKQEGYRVIGLASEGSVSLEQADLEGPLVIVTGSEADGLAMLTRKHCDQLVSIPLRG 192 Query: 259 IIKALNVSNAAAVALYITQNH 279 +LN S A A+ LY Sbjct: 193 ATPSLNASVATALLLYEVARR 213 >gi|17555908|ref|NP_499333.1| hypothetical protein Y45F3A.9 [Caenorhabditis elegans] gi|3881022|emb|CAA21494.1| C. elegans protein Y45F3A.9, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 294 Score = 86.0 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 53/292 (18%), Positives = 96/292 (32%), Gaps = 38/292 (13%) Query: 22 KLRRNHRDYKKMQSFNQKSRHTSQPENLF-------------LYGVHTVSAALNNPSRKI 68 + RN + K F + E L+G+H+V A+ + R Sbjct: 3 RTARNFAEIKPNLLFRKAKMARKSAEKYVAKKIQVPELQGEALFGLHSVLEAIRSGKRDF 62 Query: 69 FQLLATKNALARLDWDANLPH--------PFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + K R D DA + + +D++ + +H G+ ++ + Sbjct: 63 HSVFLKKAVENRADSDARIKEILSRIDELGIQKTLLTDDQLDRLTEFQ-LHNGICMDASA 121 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + S + D V DP N+GAI RSA F DG+ K P + Sbjct: 122 LQFSNFEPKTVSIFV---DKVLDPGNLGAIGRSAWYFGADGLGLVKGRGPKSITPAMIKS 178 Query: 181 SGALEHIPYIRISNLTDALQKMHS---------WGFQTIGLSSDSKKPLEQEIKNDKIAL 231 S ++ + + + S K L+Q + + Sbjct: 179 SCGALEHLPVQQFLNFNEFRDKIKAAGGELVATCDPGAAEKAGISAKSLDQWTPEKPVGI 238 Query: 232 ILGAEGKGLRPKTQETATSMAHL-HMPG---IIKALNVSNAAAVALYITQNH 279 +LG EG G+ ++ + + + +LNVS A + L+ Sbjct: 239 VLGDEGVGISRGILNLCDTVISISPVRKDGSNVTSLNVSVVAGILLHHISLQ 290 >gi|291405649|ref|XP_002719297.1| PREDICTED: mitochondrial rRNA methyltransferase 1 homolog [Oryctolagus cuniculus] Length = 346 Score = 86.0 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 21/222 (9%) Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQL 134 A PV Q +D + + + P + + QL Sbjct: 90 ELLRAAEARGIPVLRPRRQKLDALCRHQVHQGVCMEVSPLQPQPWTETMGAGPGADPQQL 149 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VLD + DP N+GA+LRSA D +IT++R S + V++K+++GA+E + + Sbjct: 150 WLVLDGLQDPRNLGAVLRSAHFLGVDKVITSRRSSCPLTPVVSKASAGAMEVMDVFSTDD 209 Query: 195 LTDALQKMHSWGF-----------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 L LQ G+ +T S + + L+LG EG GL + Sbjct: 210 LAGFLQARARQGWLVAGAVGPPGPETAQSSEVPVTSCLDFLWDRPTLLVLGNEGSGLSQE 269 Query: 244 TQETATSMAHL-H---MPGIIKALNVSNAAAVALYITQNHFA 281 Q + + + +P +++LNVS AA + L+ + Sbjct: 270 VQASCRCLLTILPGRQLPPGLESLNVSVAAGILLHAICSQRK 311 >gi|182439778|ref|YP_001827497.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780442|ref|ZP_08239707.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus XylebKG-1] gi|178468294|dbj|BAG22814.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660775|gb|EGE45621.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus XylebKG-1] Length = 272 Score = 86.0 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 99/239 (41%), Gaps = 5/239 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + R G + A LL+ K + D Sbjct: 17 DYIGLTDVELRRRREPAEGLFIAEGEKVIRRARQTGYEMRSMLLSAK--WVDVMRDVIDE 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P PV V P+ +++ G LA L + + + ++ +++++ VND NIG Sbjct: 75 VPAPVYAVAPELAERVTGYHVHRGALASMQRKPLPASEELLATARRVVIMESVNDHTNIG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI RSA A D ++ + + K + GA+ +PY R+ AL+ + GF+ Sbjct: 135 AIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKALEGVREAGFR 194 Query: 209 TIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ D+K E + +AL+LGAEG GL + A + + M + +LN Sbjct: 195 LLALTPDAKATSIDEAAPHRLERVALMLGAEGDGLSTQALMAADAWVRIPMAHGVDSLN 253 >gi|313898435|ref|ZP_07831972.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2] gi|312956817|gb|EFR38448.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2] Length = 243 Score = 86.0 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 94/241 (39%), Gaps = 11/241 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDK 103 E + G +V A L R I +++ + R P++ Q ID+ Sbjct: 2 EQYIVEGNISVKAVLLAQKRDIIKIIVDEKKKDRDTAFILRQAAQRNIPIEQNSRQAIDE 61 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + H GL TL A ++S L +++ V DP N G ILR+ A CDG Sbjct: 62 LA-QGKTHGGLLALCGERRFQTLQAVAEKDSVFLALIEGVEDPFNFGYILRTLYAAGCDG 120 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I R + + V+ K+++GA E++ I +++ L +M Q I L Sbjct: 121 VIIPPRNWTTAAGVVTKASAGASEYLNLIVATDMEALLHEMKQADIQLICAQRKDAISLY 180 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN---VSNAAAVALYITQN 278 K+ L +G E +GL Q + + + N + + A+ + Sbjct: 181 DYAFPLKLCLAIGGEMRGLSKHVQNHSDQNLFIPYRQDFR--NAMTAAASTAIFAFELVR 238 Query: 279 H 279 Sbjct: 239 Q 239 >gi|189462421|ref|ZP_03011206.1| hypothetical protein BACCOP_03108 [Bacteroides coprocola DSM 17136] gi|189430859|gb|EDU99843.1| hypothetical protein BACCOP_03108 [Bacteroides coprocola DSM 17136] Length = 180 Score = 86.0 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 3/161 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++VLD V HNIGA+ R++ AF + I + + K+A GA Sbjct: 19 EFKEAEKLPLVVVLDEVRSLHNIGAVFRTSDAFLVNCIYLCGITATPPHPEMHKTALGAE 78 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + +A+ ++H+ G+ + + + N K A+++G E KG++ Sbjct: 79 YTVDWKYCKQTQEAVNELHAEGYTVLAIEQCEGSTMLDHLVLDPNKKYAIVMGNEVKGVQ 138 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + + G +LNVS + L+ N K Sbjct: 139 QEVVDMCDGCIEIPQYGTKHSLNVSVTTGIVLWEFANKMMK 179 >gi|269956236|ref|YP_003326025.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM 15894] gi|269304917|gb|ACZ30467.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM 15894] Length = 276 Score = 86.0 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 87/247 (35%), Gaps = 12/247 (4%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY ++ ++ + AL R LL L + Sbjct: 19 DYTDLKDVKLRAVREPAEGLYMAESSTVIRRALAAGHRP-RSLLMADRWLESMADVIADW 77 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHV 141 PV + +++I G +H+G + ++ + VL+ V Sbjct: 78 PGVPVFVGSEEVLEQITGFH-LHRGALAAMHRPALMPVRELVASARGGAGARRVAVLEDV 136 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 D N+GA RSA A D ++ T R + + + G + +P+ R+ L++ Sbjct: 137 VDHTNVGAAFRSAAALGVDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRLETWPGGLRE 196 Query: 202 MHSWGFQTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + GF + +K+A++LG EG G+ + + + M G Sbjct: 197 LQDDGFVVVALALSDDAVSLDELAADPPEKLAVVLGTEGHGMTAAALDACDVVVKIPMAG 256 Query: 259 IIKALNV 265 + +LNV Sbjct: 257 GVDSLNV 263 >gi|148926322|ref|ZP_01810006.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8486] gi|145844714|gb|EDK21819.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8486] Length = 227 Score = 86.0 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG L I +L K ++ + F +K + +T + K Sbjct: 2 IVYGKQIFFYILEYHKDCINELYLAKECD-KITFSKIAKSGFKIKKLDFKT-AQAYAKGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG L+ L+ ++ + +++L ++D NIGAI R+A A +I Sbjct: 60 NHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKL 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 E + +++SGA +P + ++ + ++ GF K+ +I N K Sbjct: 120 TME--GVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYASDGSGKEIHSVKISNGKK 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L+LG+EG GL K + + M +LNVS A A+ Sbjct: 178 VLVLGSEGFGLSSKIIKKCDECVGIAMKNNFDSLNVSAAFAILC 221 >gi|167753955|ref|ZP_02426082.1| hypothetical protein ALIPUT_02240 [Alistipes putredinis DSM 17216] gi|167658580|gb|EDS02710.1| hypothetical protein ALIPUT_02240 [Alistipes putredinis DSM 17216] Length = 228 Score = 86.0 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 54/145 (37%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + ++ ++ N A++R AF I T + V + + Sbjct: 38 RTRYMTILTENTYHAQNASALVRHCEAFGVQDIHTIETRCKFNPNVNIVRGTDKWIDLHR 97 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 R + A K + + K P ++ L+ G E G+ + A Sbjct: 98 HRTTAEAIADLKGRGYRIVATTPHREDKTPETFDVAASPFVLVFGTEHAGISDEIVAAAD 157 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + M G++++LNVS +AA+ +Y Sbjct: 158 EFLRIPMCGMVESLNVSASAAILIY 182 >gi|160900365|ref|YP_001565947.1| tRNA/rRNA methyltransferase SpoU [Delftia acidovorans SPH-1] gi|160365949|gb|ABX37562.1| tRNA/rRNA methyltransferase (SpoU) [Delftia acidovorans SPH-1] Length = 263 Score = 86.0 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 98/262 (37%), Gaps = 10/262 (3%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 S + + R++ K ++ Q S + ++L G H AAL + + Sbjct: 2 SRQPAATLIQSRDNVLVKDLRRLVQDSGAYRKQGRVWLEGDHLCRAALARGMQP--SVAV 59 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 + L + + ++ G E+ + + +R Sbjct: 60 VAESFWPLVPLEWVQGAGKCVVLADALFAEVSGLESPARIG----FLMDWQASAVIRAGV 115 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +VLD V D N+G+ILRSA AF ++ K + S + ++ GA Sbjct: 116 ATVVLDRVQDAGNVGSILRSAAAFGFSQVVALKGTAALWSQKVLRAGMGAHF----GLQL 171 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + + + + G I SS + + A +G EG+G+ + A Sbjct: 172 VESASSEDLDALGLPLIVTSSHQGELIHNAALPWPCAWAMGHEGQGVGEALMQRAAQHVR 231 Query: 254 LHMPGIIKALNVSNAAAVALYI 275 + PG ++LNV+ AAA+ L+ Sbjct: 232 IGQPGGEESLNVAAAAAICLHA 253 >gi|221134069|ref|ZP_03560374.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola sp. HTCC2999] Length = 235 Score = 86.0 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 2/152 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R + L ++++ V+ PHN+ A++R+ A ++ + S + S Sbjct: 15 QRQTDLTVLMEEVHKPHNVAALIRTCDAVGIHEAHVV--WNQNYSLRVGTSLGAHHWVGM 72 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + SD + A+ILG E G A Sbjct: 73 HEHSDIEKAIAHLKGQGMQVLVTNLSDDAVDFREVDYTLPTAIILGQEKFGATKNAIALA 132 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G+ +LNVS AAAV LY Q Sbjct: 133 DKEIVVPMVGMTVSLNVSVAAAVILYEAQRQR 164 >gi|292493437|ref|YP_003528876.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus halophilus Nc4] gi|291582032|gb|ADE16489.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus halophilus Nc4] Length = 171 Score = 86.0 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 4/151 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R + + L ++ H Sbjct: 1 MFHIVLFEPEIPPNTGNIIRLCANTGAHLHLIQPLGFDLDDRRLRRAGLDY--HEWARVK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250 + + Q SS ++P ++ + AL+ G E +GL K T + Sbjct: 59 VHPSLEHFSRRVQPRQVWACSSRGQQPYDKAHFHPGDALLFGPETRGLPRKLLNTLSPKQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M ++LN+SNA AV LY Sbjct: 119 VLRIPMLPASRSLNLSNAVAVVLYEAWRQHN 149 >gi|26553475|ref|NP_757409.1| rRNA methylase [Mycoplasma penetrans HF-2] gi|26453481|dbj|BAC43813.1| rRNA methylase [Mycoplasma penetrans HF-2] Length = 238 Score = 86.0 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 104/235 (44%), Gaps = 15/235 (6%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 +G V A ++ + L + V + DK Sbjct: 5 FGKKAVIEAFKQNELSEVYYVSYFDELKEF-----KSKNIKLNKVNKKFFDKYEVVHQNI 59 Query: 112 QGLALETAPLLSPTLDAV--------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 G+A E++ + D+ + ++++VLD + DP N GAI R++ +F GII Sbjct: 60 LGIAKESSLTIHTDFDSFIEKINNLNTDKKIILVLDEIQDPGNFGAICRTSKSFQVAGII 119 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + + K++ G + ++ +++++NL++ L K+ + T+ + D K + Sbjct: 120 FKKNNQIQINETVIKTSLGTVNYLNFLKVNNLSEVLNKLKKENYWTVCTALDEKSIPLSK 179 Query: 224 IKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K D K+ +I+G E KG+ ++ + + + M +++LNVS + A+ LY Sbjct: 180 FKTDINKLVVIVGNENKGVSELIKKDSDFIVKIEMDSSVQSLNVSVSTAIILYYL 234 >gi|134300171|ref|YP_001113667.1| RNA methyltransferase [Desulfotomaculum reducens MI-1] gi|134052871|gb|ABO50842.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum reducens MI-1] Length = 152 Score = 86.0 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 1/98 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + A + + ++ +P + + L+ G E GL + Sbjct: 50 YWHLLDLHYHKSFAALQQQYPEGRFWYFTTKGGRPYHEASFEENDFLVFGKETAGLPKEL 109 Query: 245 QETA-TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M G +++LN+SN+ A+A+Y Sbjct: 110 LAANPDNCLRIPMLGQVRSLNLSNSVAIAVYEALRQHN 147 >gi|295401770|ref|ZP_06811735.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus thermoglucosidasius C56-YS93] gi|312112249|ref|YP_003990565.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. Y4.1MC1] gi|294976137|gb|EFG51750.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus thermoglucosidasius C56-YS93] gi|311217350|gb|ADP75954.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. Y4.1MC1] Length = 157 Score = 86.0 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 49/150 (32%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + ++ +L ++ ++ Sbjct: 1 MPLHVVLYQPEIPANTGNIARTCAATDTALHLIRPLGFSTDDKMLKRAGLDYWPYVNISY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQE-TAT 249 +L + + F I +K + G E GL E Sbjct: 61 YDSLDELFGRYPHGEFYFITKFGKKYYDSFDFSDTEKDLFFVFGRETTGLPKDLLEANMD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 121 RCLRIPMNDKVRSLNLSNTAAILVYEALRQ 150 >gi|237751640|ref|ZP_04582120.1| tRNA methyltransferase [Helicobacter bilis ATCC 43879] gi|229373006|gb|EEO23397.1| tRNA methyltransferase [Helicobacter bilis ATCC 43879] Length = 235 Score = 86.0 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 87/233 (37%), Gaps = 3/233 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++G +++ I ++ K+ L P+ + + + + Sbjct: 2 IIFGKQCFEYVIHHAPTHIQEIYLAKDIEKPLFAKLKRL-NVPILRIDNKKAQSLA-RGK 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ + P+ A+ + L+VL ++D NIGAI+R+A A GI+ + R + Sbjct: 60 NHQGVFAKIKPIEQTPFKALLDFSSLVVLCGMSDIGNIGAIVRTAYALGIGGIVISDRDT 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + A+ S + + + + + Q + + E +K Sbjct: 120 LNTQALEGIFRSSSGALLNMPFSFHKSSLSVANEAKMKQFTLIGAGKNNKNILESTPNKW 179 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A+ +G E GL K H+ M +LN S AA + + H K Sbjct: 180 AIFIGREDTGLPQKLLNKLDYALHIAMCNGFDSLNASVAAGILI-DRIQHIKK 231 >gi|184200521|ref|YP_001854728.1| putative RNA methyltransferase [Kocuria rhizophila DC2201] gi|183580751|dbj|BAG29222.1| putative RNA methyltransferase [Kocuria rhizophila DC2201] Length = 154 Score = 86.0 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L V P N G +R A + + A L ++ H + Sbjct: 1 MLHFVFHTPEIPGNTGNAIRLAACTGARLHLVEPLGFNFDHANLRRAGLDY--HDLAVMD 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATS 250 + T + +S S D L+ G E GL K E Sbjct: 59 VHPTVDALWDALGDARVFAFTSHSSTRHTDVAYRDGDVLLFGRESTGLPEKVLTDEHVHD 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN++N+A++ALY Sbjct: 119 RVRIPMLPGRRSLNLANSASIALYEAWRQL 148 >gi|239907493|ref|YP_002954234.1| RNA methyltransferase [Desulfovibrio magneticus RS-1] gi|239797359|dbj|BAH76348.1| RNA methyltransferase [Desulfovibrio magneticus RS-1] Length = 164 Score = 85.7 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%) Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + P + L+ G E GL + A + + + G +++LNV+NAA+V LY Sbjct: 85 HAAVPHHRFPFEADDILLFGTESSGLSEEVLAAAHRLVTIPIWGQVRSLNVANAASVVLY 144 Query: 275 IT 276 Sbjct: 145 EA 146 >gi|327481683|gb|AEA84993.1| rRNA methylase [Pseudomonas stutzeri DSM 4166] Length = 241 Score = 85.7 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 85/255 (33%), Gaps = 20/255 (7%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSA----ALNNPSRKIFQLLATKNALARLDWD 84 + ++ +QK ++ ++ + G H V AL NP + +L T + Sbjct: 2 KFDDIKKLHQK-KYRAEFGRFLVEGEHLVLELQKAALLNPLLQGSELYVT-------NAY 53 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 PF + + + +I + +AL P+ + A + + L + DP Sbjct: 54 EQWQSPFKTHLISDRQMAQIADTKTPQGIVALV--PMPGAPVAAPVAGERAIYLHEIQDP 111 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+G ILR+ F + + + + +S+ GA+ H P L + Sbjct: 112 GNLGTILRTLAWFGNFRCLLSPGSVDPYNPKVVRSSMGAIFHAPLELDVALDSLRTRFAR 171 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKAL 263 + + G E +G+ + + G I++L Sbjct: 172 IACLDMQGEPVQSTAFTTFE-----CYLFGNEARGVPRDQLNALGARPFTIPGCGAIESL 226 Query: 264 NVSNAAAVALYITQN 278 N++ + Y Sbjct: 227 NLAATVNMCAYELSR 241 >gi|110806525|ref|YP_690045.1| putative methyltransferase [Shigella flexneri 5 str. 8401] gi|110616073|gb|ABF04740.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] Length = 345 Score = 85.7 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99 + E +YG + A + I + ++ R + V Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155 + K G E H G+ T+ ++ L++ ++PHN+G ++RS Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVIQAGAQDCVLALENESNPHNLGGMMRSCA 219 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F G++ + + ES ++A G EH+ I N+ + L G+ + SS+ Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 KPL + K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRMKIDGTGNVAGLNISVATGVLLGE 338 Query: 276 TQNH 279 Sbjct: 339 WWRQ 342 >gi|163867933|ref|YP_001609137.1| RNA methyltransferase [Bartonella tribocorum CIP 105476] gi|161017584|emb|CAK01142.1| RNA methyltransferase [Bartonella tribocorum CIP 105476] Length = 158 Score = 85.7 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 51/149 (34%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L + L + N G ILR + F I L ++ LE+ R Sbjct: 1 MTLHIALFQPDIAGNTGTILRLSACFGLHVHIIEPAGFNLSDRNLKRAGLDYLEYASLER 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + M + + + LS+ +K Q L+ G E G+ E+A Sbjct: 61 HIDWQHFISSMKRFNRRLLLLSTKAKTCYTQICYQKNDVLLFGRESAGVPDYVHESADYT 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN++ + A+ Sbjct: 121 LKIPMQPQSRSLNLAMSVAITTGEALRQI 149 >gi|257126058|ref|YP_003164172.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b] gi|257049997|gb|ACV39181.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b] Length = 256 Score = 85.7 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 78/236 (33%), Gaps = 9/236 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + G ++ + +++ ++ D + + + Sbjct: 24 YRDENSIFKAEGEKFLNE-----NINFNKIIVKESKFEYFDEKYKISKHDNLTILKDNLF 78 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 D++ + +++LD + DP N G I+R+ +A + Sbjct: 79 DEVS----TQENSQGIIFLYSKNLNTIEDIQGDVVILDDIQDPGNAGTIIRTMIAANFQN 134 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I TK + ++ + + I + + + + E Sbjct: 135 LILTKGSVDVYNPKTVRATMSGIFKLNIIYETPEKIVEFLNNKNYLKIATALHEDSISYE 194 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + A I G EG G+ E + A + + G I++LNVS A + LY + Sbjct: 195 KIELRENNAFIFGHEGGGVSEYLIENSDIKAIIPIYGNIESLNVSVATGIFLYKMR 250 >gi|86748324|ref|YP_484820.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris HaA2] gi|86571352|gb|ABD05909.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris HaA2] Length = 150 Score = 85.7 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 55/144 (38%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + P N G +LR + + I P+ ++ L+ I +R + Sbjct: 3 IALYQPDIPQNTGTLLRFCACLNVEAHIIEPAGFPTSDRHFRRAGMDYLDQITIVRHDSW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + Q + I L++ P ++ L+LG E G+ + A + + Sbjct: 63 SKFEQWRKDADCRVILLTTKGVTPYLEQRYQSTDVLLLGRESAGVPDEVAAAADARIVIP 122 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 M ++LNV+ AAA+ + Sbjct: 123 MQPGFRSLNVAMAAALVVGEALRQ 146 >gi|328881199|emb|CCA54438.1| putative rRNA methylase [Streptomyces venezuelae ATCC 10712] Length = 272 Score = 85.7 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 55/238 (23%), Positives = 92/238 (38%), Gaps = 5/238 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y + + R G + A LL+ K + D Sbjct: 18 YTGLTDVELRRRREPAEGLFIAEGEKVIRRARQAGYEMRSMLLSAK--WVDVMRDVIDEV 75 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P PV + P +++ G LA L + + ++ ++V++ VND NIGA Sbjct: 76 PAPVYAIQPDLAERVTGYHVHRGALASMQRKPLPDAAELLVGARRVVVMESVNDHTNIGA 135 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I RSA A D ++ + + K + GA+ +PY R+ L+ + GF+ Sbjct: 136 IFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDTWPRGLEAVREAGFKL 195 Query: 210 IGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ K E + +AL+LGAEG GL + A + M + +LN Sbjct: 196 LALTPAEKAMSIDEAAPHRLERVALMLGAEGDGLTTQALRAADEWVRIPMAHGVDSLN 253 >gi|262065888|ref|ZP_06025500.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum ATCC 33693] gi|291380369|gb|EFE87887.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum ATCC 33693] Length = 254 Score = 85.7 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 90/277 (32%), Gaps = 29/277 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I K++ K ++ ++ G + Sbjct: 1 MEIIESKEN-------------------KLIKFLKKLKQKKYRDSEAQFLAEGHKFL--- 38 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +++ + + L + V + ++ +E Sbjct: 39 ---DYDTVPEIIIVREDVKDLYMEKLDRFECKKILVSEKIFQELSSQENSQG----IIIV 91 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 D S L++LD V DP N+G I+R A + II TK + + ++ Sbjct: 92 YYKKNNDLNSLSNNLVILDDVADPGNLGTIIRLCDATNFKDIILTKGTVDVYNEKVIRAT 151 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G++ ++ + + P + +K A+I G EG+G+ Sbjct: 152 MGSILNVNLFYLEKQEIIKLLKENNYSVIATYLDKEALPYNKIQLKEKNAVIFGNEGRGI 211 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + + ++LNV+ A+A+ LY + Sbjct: 212 CDEFINISDCKTIIPILSNTESLNVAVASAIILYKFR 248 >gi|282907859|ref|ZP_06315694.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282328243|gb|EFB58521.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus WW2703/97] Length = 110 Score = 85.7 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 33/74 (44%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 F G +++ + +A+++G+EG+G+ + + M G + +LN S Sbjct: 31 FWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNAS 90 Query: 267 NAAAVALYITQNHF 280 AA++ +Y Sbjct: 91 VAASLMMYEVFRKR 104 >gi|87303170|ref|ZP_01085968.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 5701] gi|87282337|gb|EAQ74297.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 5701] Length = 229 Score = 85.7 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 25/61 (40%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q A +LGAE GL + G++++LNVS AAAV L+ Sbjct: 107 YRQCDFTGPTAFLLGAEKWGLSEAAAAMVDQALFIPTGGMVQSLNVSVAAAVLLFEALRQ 166 Query: 280 F 280 Sbjct: 167 R 167 >gi|227329687|ref|ZP_03833711.1| putative RNA-methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 154 Score = 85.7 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R A C + E L ++ H Sbjct: 1 MFHIALYEPQIAPNTGNIIRLAANNGCTLHLIEPLGFDFEEKKLRRAGLDY--HDLANVS 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 + G + ++ +P +Q L+ G+E GL + + + Sbjct: 59 RHKNYQDFLAAVPGKRIFACTTKGSRPYDQPTYQPDDVLLFGSETSGLPDEIRNGFESDF 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ Y Sbjct: 119 RIRIPMQSNNRSLNLSNAVAIISYEAWRQ 147 >gi|227113255|ref|ZP_03826911.1| putative RNA-methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 154 Score = 85.7 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R A C + E L ++ H Sbjct: 1 MFHIALYEPQIAPNTGNIIRLAANNGCTLHLIEPLGFDFEEKKLRRAGLDY--HDLANVS 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 + G + ++ +P +Q L+ G+E GL + + + Sbjct: 59 RHKNYQDFLAAVPGKRIFACTTKGSRPYDQPTYQPDDVLLFGSETSGLPDEIRNGFESDF 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ Y Sbjct: 119 RIRIPMQSNNRSLNLSNAVAIISYEAWRQ 147 >gi|295132801|ref|YP_003583477.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] gi|294980816|gb|ADF51281.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] Length = 215 Score = 85.7 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 83/232 (35%), Gaps = 21/232 (9%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 G+ + LN+ R + +L A++ +D + + + I + Sbjct: 2 AEGIKVIRELLNSDFR-LDKLFASE-----TIFDISKDQFVLTEERDLKKISFL-KTPQT 54 Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 GL L D L + LD V DP N+G I+R F ++ + Sbjct: 55 ALGLFKIPQQNLGVLED------LTVALDGVRDPGNLGTIIRLCDWFGVKNLVCSTDTVD 108 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + + +S G++ + + + + + + + Q+ K Sbjct: 109 CFNPKVIQSTMGSITRVNVVYKNLSEFLQSQDIV-----SYGTFMDGENVYQKRLQQKSV 163 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSNAAAVALYITQNH 279 L+LG E G+ P+ + + + G ++LNV+ A A+ L + + Sbjct: 164 LVLGNEANGINPEIENLISEKISIPQFGKSQETESLNVATATAIFLSEFRRN 215 >gi|242046186|ref|XP_002460964.1| hypothetical protein SORBIDRAFT_02g038320 [Sorghum bicolor] gi|241924341|gb|EER97485.1| hypothetical protein SORBIDRAFT_02g038320 [Sorghum bicolor] Length = 354 Score = 85.7 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 33/115 (28%) Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 + + S S I S + Sbjct: 187 HVISCDSSKRYRDNRHVSMGAEKWLDIEIWNSPAECFSALKKRGYRIATTYLGTDSVCVY 246 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + A+++G E +G+ E + + M G++ + NVS AA + ++ Sbjct: 247 DMDWSQPTAIVVGNELRGISDDALELSDLHCSVPMKGMVDSFNVSVAAGILMHHA 301 >gi|149194690|ref|ZP_01871785.1| rRNA methylase SpoU [Caminibacter mediatlanticus TB-2] gi|149135113|gb|EDM23594.1| rRNA methylase SpoU [Caminibacter mediatlanticus TB-2] Length = 200 Score = 85.7 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 51/152 (33%), Gaps = 2/152 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + +D+V PHN+ AI+R+ A + + R+ + Sbjct: 19 RQDTLRVFMDYVYSPHNLSAIVRTCDAVNVGKLYY--RHQKKVKLNNEITMGAHKWLFTE 76 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + L + ++LG E G + + A Sbjct: 77 YVEDIENFYKNIKEKGYQVVVTLLDKDTIDFREVDYTKPTLIVLGNEVDGASEVSIKYAD 136 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G+ ++LNVS A AV LY Q + Sbjct: 137 KKVIIPMYGMSQSLNVSVANAVILYEAQRQRS 168 >gi|148272891|ref|YP_001222452.1| hypothetical protein CMM_1709 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830821|emb|CAN01762.1| unnamed protein product [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 269 Score = 85.7 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 87/239 (36%), Gaps = 4/239 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY ++ + + AL +L + L Sbjct: 16 DYSRLTDVALRRVSEPAGGLYIAESTKVMGRALAAGHVP-RSVLVQEQWLDDAAPLLEGF 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV ++++ G LA P L D +R+++ ++VL+ + D N+G Sbjct: 75 PDVPVFVGAAAVLERLTGYNLHRGALAAMHRPPLPAVADVLRDARRVVVLEDIVDHTNVG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI R+ D ++ T R + + + G + +P+ R+ ++A +H GF Sbjct: 135 AIFRAVAGIGADAVLITPRCADPLYRRSVRVSMGTVLQVPWTRLPEWSEAAPLLHEAGFH 194 Query: 209 TIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L+ + D IAL+LG EG GL A S + M + +LN Sbjct: 195 LAALALEDDAVTLDAFAADPPERIALVLGTEGDGLSRHALRHADSTVVIPMLHGVDSLN 253 >gi|57237161|ref|YP_178173.1| RNA methyltransferase [Campylobacter jejuni RM1221] gi|86151169|ref|ZP_01069384.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 260.94] gi|315123758|ref|YP_004065762.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|57165965|gb|AAW34744.1| RNA methyltransferase, TrmH family [Campylobacter jejuni RM1221] gi|85841516|gb|EAQ58763.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 260.94] gi|284925446|gb|ADC27798.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni IA3902] gi|315017480|gb|ADT65573.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315057593|gb|ADT71922.1| rRNA methylase [Campylobacter jejuni subsp. jejuni S3] Length = 227 Score = 85.7 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG L I +L K ++ + F +K + +T + K Sbjct: 2 IVYGKQIFFYILEYHKDCINELYLAKECD-KITFSKIAKSGFKIKKLDFKT-AQAYAKGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG L+ L+ ++ + +++L ++D NIGAI R+A A +I Sbjct: 60 NHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKL 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 E + +++SGA +P ++ + ++ GF K+ +I N K Sbjct: 120 AME--GVIRTSSGAALDLPIAISNDALSVINELKQVGFYFYASDGSGKEIHSVKISNGKK 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L+LG+EG GL K + + M +LNVS A A+ Sbjct: 178 VLVLGSEGFGLSSKIIKKCDECVGIAMKNNFDSLNVSAAFAILC 221 >gi|160897116|ref|YP_001562698.1| RNA methyltransferase [Delftia acidovorans SPH-1] gi|160362700|gb|ABX34313.1| RNA methyltransferase, TrmH family, group 2 [Delftia acidovorans SPH-1] Length = 165 Score = 85.7 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R A C + E ++ ++ E+ P R Sbjct: 1 MFHIVLVAPEIPPNTGNVIRLAANTGCSLHLIEPLGFSMEDRLMRRAGLDYHEYAPVRRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 ++ LQ + +++ S P L+ G+E KGL + +E Sbjct: 61 ADWQAFLQDCQPDRQRMFAMTTHSSSPAHAIGFQPGDWLVFGSESKGLPAEVREQFPPQQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 121 RLRLPMLPQQRSLNLSNAVAVTVFEAWRQ 149 >gi|170782313|ref|YP_001710646.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] gi|169156882|emb|CAQ02050.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] Length = 284 Score = 85.7 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 86/239 (35%), Gaps = 4/239 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY ++ + + AL +L + L + Sbjct: 31 DYSRLTDVALRRVSEPAGGLYIAESTKVMGRALAAGHVP-RSVLVQEQWLDDVAPLLEGF 89 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV ++++ G LA P L D +R+++ ++VL+ + D N+G Sbjct: 90 PDVPVFVGAAAVLERLTGYNLHRGALAAMHRPPLPAVADVLRDARRVVVLEDIVDHTNVG 149 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI R+ D ++ T R + + + G + +P+ R+ ++A +H GF Sbjct: 150 AIFRAVAGIGADAVLITPRCADPLYRRSVRVSMGTVLQVPWTRLPEWSEAAPLLHEAGFH 209 Query: 209 TIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++IAL+LG EG GL A S + M + +LN Sbjct: 210 LAALALEDDAVTLDAFAADAPERIALVLGTEGDGLSRHALRHADSTVVIPMLHGVDSLN 268 >gi|78778102|ref|YP_394417.1| RNA methyltransferase TrmH, group 3 [Sulfurimonas denitrificans DSM 1251] gi|78498642|gb|ABB45182.1| RNA methyltransferase TrmH, group 3 [Sulfurimonas denitrificans DSM 1251] Length = 226 Score = 85.7 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 80/224 (35%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +Y ++ + KI +L K + + F +K +PP K+ + Sbjct: 2 LIYAKQPINYIIQKHPTKIKKLYLAKEMDKKEYSQL-MKIGFEIKRIPPDAAGKMCKNAS 60 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG+ E + N + ++VL V D NIGAI+R+A A DG+I Sbjct: 61 -HQGILAEVDEYVLCNYKTFLNYEFVLVLSGVTDVGNIGAIIRTAYALGVDGVIACG--V 117 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 S S I + T + + K Sbjct: 118 KSLPIEAIVRTSTGALFDMPFAIEQNVLDVLNDLKMSGFTSYGADMGATDIRDVKIKQKR 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+EG+GL + + + M +LNVS A A+ + Sbjct: 178 ALFLGSEGEGLTQRVSSKLDELVSIKMSHEFDSLNVSVAGAILM 221 >gi|325192103|emb|CCA26564.1| SpoU rRNA Methylase family putative [Albugo laibachii Nc14] Length = 1716 Score = 85.3 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 62/158 (39%), Gaps = 5/158 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++++++M ++ N+ + R+ F + ++ + + A +S A + I Sbjct: 1551 YEKSNRVIMCASLIDKVTNLAGLARTCEIFGAEKLVVSNLNTIKNDATFVSMSSSAHKWI 1610 Query: 188 PYIRISNLTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 +IS + +H W + + + DK +ILG+EG G+ Sbjct: 1611 KMEQISRGESLIDAIHHWKEVEKYHIIGLEQTSRSQCCSKYRFPDKAVIILGSEGAGIPV 1670 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + G++++LNV + A+ L+ Sbjct: 1671 EILRLVDVCVEIPQFGLVRSLNVHVSGAILLWEYTRQR 1708 >gi|239986481|ref|ZP_04707145.1| putative rRNA methylase [Streptomyces roseosporus NRRL 11379] Length = 272 Score = 85.3 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 96/239 (40%), Gaps = 5/239 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + R G + A LL+ K + D Sbjct: 17 DYIGLTDVELRRRREPAEGLFIAEGEKVIRRARQTGYEMRSMLLSAK--WVDVMRDVIDE 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P PV V P+ +++ G LA L + + ++ ++V++ VND NIG Sbjct: 75 VPAPVYAVAPELAERVTGYHVHRGALASMQRKPLPAADELLATARRVVVMESVNDHTNIG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI RSA A D ++ + + K + GA+ +PY R+ L+ + GF+ Sbjct: 135 AIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKGLEAVREAGFR 194 Query: 209 TIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ D+K E + +AL+LGAEG GL + A + M + +LN Sbjct: 195 LLALTPDAKATSIDEAAPHRLERVALMLGAEGDGLSTRALMAADEWVRIPMAHGVDSLN 253 >gi|239939998|ref|ZP_04691935.1| putative rRNA methylase [Streptomyces roseosporus NRRL 15998] gi|291443427|ref|ZP_06582817.1| rRNA methylase [Streptomyces roseosporus NRRL 15998] gi|291346374|gb|EFE73278.1| rRNA methylase [Streptomyces roseosporus NRRL 15998] Length = 256 Score = 85.3 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 96/239 (40%), Gaps = 5/239 (2%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + R G + A LL+ K + D Sbjct: 1 DYIGLTDVELRRRREPAEGLFIAEGEKVIRRARQTGYEMRSMLLSAK--WVDVMRDVIDE 58 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 P PV V P+ +++ G LA L + + ++ ++V++ VND NIG Sbjct: 59 VPAPVYAVAPELAERVTGYHVHRGALASMQRKPLPAADELLATARRVVVMESVNDHTNIG 118 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 AI RSA A D ++ + + K + GA+ +PY R+ L+ + GF+ Sbjct: 119 AIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKGLEAVREAGFR 178 Query: 209 TIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ D+K E + +AL+LGAEG GL + A + M + +LN Sbjct: 179 LLALTPDAKATSIDEAAPHRLERVALMLGAEGDGLSTRALMAADEWVRIPMAHGVDSLN 237 >gi|325282387|ref|YP_004254928.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus proteolyticus MRP] gi|324314196|gb|ADY25311.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus proteolyticus MRP] Length = 221 Score = 85.3 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 54/156 (34%), Gaps = 5/156 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +++D VN PHN+ AILR+ A S S + ++ + Sbjct: 16 RQPTLSVLMDEVNKPHNLSAILRTCDAVGAMTAHAVPPQSMSLGSFRSRIFEASSGSAHK 75 Query: 190 IRISNLTD-----ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 S + ++LGAE G+ Sbjct: 76 WVSVQQHASALEAIRTLQGQGVQVLATHLSQRSVDYREPDYTRPTCVLLGAEKFGVSDVA 135 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E A + + M G++++LNVS AAA L+ Q Sbjct: 136 AEAADANIVIPMMGMVQSLNVSVAAATILFEAQRQR 171 >gi|307293833|ref|ZP_07573677.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum L-1] gi|306879984|gb|EFN11201.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum L-1] Length = 156 Score = 85.3 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 56/144 (38%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L N+GAILR A FS I A L ++A R +N Sbjct: 7 IALYQPEIAGNVGAILRLAACFSVPVDIVMPMGFAFSDAKLKRAAMDYGASADVTRHANF 66 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + G + + +SS + + L + L++G+E G+ ++ A + Sbjct: 67 EAFDAQRRARGQRLMLMSSHASQRLPEVEFRADDILLMGSESAGVPDAVRDLADVRVRIP 126 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 M ++LN++ + +A+ Sbjct: 127 MAPGFRSLNIAVSTGIAVAEALRQ 150 >gi|315501253|ref|YP_004080140.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5] gi|315407872|gb|ADU05989.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5] Length = 275 Score = 85.3 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 55/282 (19%), Positives = 98/282 (34%), Gaps = 27/282 (9%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 + + + +++ Q+ + + GV ++ AL L + Sbjct: 2 AKTLTITTRNASFQQWQALLTNRTKRQRSGEFLVQGVRPITVALEQGWEIRALLHPDRQP 61 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA-VHQGLALETAPLLSPTLDAVRNSQLLM 136 L+R D + P+ + ++ GKE + LA+ P V + L++ Sbjct: 62 LSRWCRDLLDRADARRVALAPELMRELSGKEEESPELLAVVAQPADDLARIPVGPAMLVV 121 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 V D P NIG ++RSA AF G+I T + ++ +G+L +P +R+ + Sbjct: 122 VFDRPKTPGNIGTLIRSADAFGASGVIITGHAADPYDPKAVRATTGSLFALPVVRVPSHR 181 Query: 197 DALQK------MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 D L Q IG + + L++G E GL QE + Sbjct: 182 DVLDWVAAVRADGLPQVQIIGTDEHGDVDVAEHDLTGPTLLLIGNETHGLSKGWQEASDR 241 Query: 251 MAHLHMPG----------IIKALNVSNAAAVALYITQNHFAK 282 M + + G VALY A+ Sbjct: 242 MVRIPIVGAASSLNAAAAGT----------VALYEAARQRAE 273 >gi|260462507|ref|ZP_05810714.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum WSM2075] gi|259031703|gb|EEW32972.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum WSM2075] Length = 265 Score = 85.3 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 91/236 (38%), Gaps = 5/236 (2%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-PFPVKTVPPQTIDK 103 + G + L++ +L ++ L L + PV V +D Sbjct: 28 RQGRFVAEGKVVLDLLLSSRRFSAESVLVLESRLGGLKDTLDKAPVDLPVYIVTGAVMDA 87 Query: 104 IVGKEAVHQGLALETAPLLSPT---LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 I G LA+ P LDA+ L++VL +++ N+G+I R+A AF D Sbjct: 88 IAGFHLHRGILAIGRKETPQPAGPLLDALPALALVVVLVGISNHDNMGSIFRNAAAFGAD 147 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ + + GA IP+ ++ + GF+ LS + + Sbjct: 148 AVLIDATCCDPLYRKAIRVSVGAALKIPFASFTDTAGFTAMLAERGFEQFALSPRGRTDI 207 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++AL LG EG+GL + M +LNV+ A+A+AL+ Sbjct: 208 RDAKSAGRLALYLGTEGEGLPESLLARL-QTVRITMAEGFDSLNVAAASAIALHHF 262 >gi|193213878|ref|YP_001995077.1| tRNA/rRNA methyltransferase SpoU [Chloroherpeton thalassium ATCC 35110] gi|193087355|gb|ACF12630.1| tRNA/rRNA methyltransferase (SpoU) [Chloroherpeton thalassium ATCC 35110] Length = 179 Score = 85.3 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 65/153 (42%), Gaps = 2/153 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + ++ ++ N+G+I R+ A +I T + + K A GA E + + Sbjct: 22 QKHPIYVMFQNIRSMWNVGSIFRTCDAARIQKVIITGYTATPPRPQIDKVALGATETVDW 81 Query: 190 IRISNLTDA--LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +++ +A K + ++ +++ E ++ + L+LG E G+ + + Sbjct: 82 EYVADPLEALADLKDQGVKIAALEITENARNYDELSAEDFPLCLVLGNEVTGIDDEVLQE 141 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + G +LNV+ +A +A++ F Sbjct: 142 CDFALEIPQYGTKHSLNVAVSAGIAIFEAVRQF 174 >gi|149192621|ref|ZP_01870771.1| rRNA methylase, SpoU family protein [Vibrio shilonii AK1] gi|148833544|gb|EDL50631.1| rRNA methylase, SpoU family protein [Vibrio shilonii AK1] Length = 158 Score = 85.3 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 49/149 (32%), Gaps = 4/149 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193 + L N G I+R + + E + ++ + + + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVKRHKDY 63 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251 A + ++ ++ ++ + L+ G E +GL + E+ Sbjct: 64 AAFIAYLEENNPNYRLFACTTKTTGHHTDAKYQQGDVLLFGPETRGLPAEVIESLPMEQR 123 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ Y F Sbjct: 124 IRIPMMPDARSLNLSNAVAIIAYEAWRQF 152 >gi|33866213|ref|NP_897772.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 8102] gi|33639188|emb|CAE08196.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 8102] Length = 229 Score = 85.3 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R + L ++L+HV PHN+ AILRS A + + S + Sbjct: 16 NHRMADLTVLLEHVEKPHNLSAILRSCDAVGALEAHIVSLQGRTRTFNSTAQGSQKWVPL 75 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 K + L ++K + + A +LGAE GL + ++ Sbjct: 76 NDHPTIETAIGSLKDRGFRVYGTHLGVEAKDYRDCD-FTGPTAFVLGAEKWGLTDRARDL 134 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS A A L+ Sbjct: 135 MDEALFIPMRGMVQSLNVSVATATLLFEALRQR 167 >gi|302864970|ref|YP_003833607.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029] gi|302567829|gb|ADL44031.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC 27029] Length = 275 Score = 85.3 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 55/282 (19%), Positives = 98/282 (34%), Gaps = 27/282 (9%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 + + + +++ Q+ + + GV ++ AL L + Sbjct: 2 AKTLTITTRNASFQQWQALLTNRTKRQRSGEFLVQGVRPITVALEQGWEIRALLHPDRQP 61 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA-VHQGLALETAPLLSPTLDAVRNSQLLM 136 L+R D + P+ + ++ GKE + LA+ P V + L++ Sbjct: 62 LSRWCRDLLDRSDARRVALAPELMRELSGKEEESPELLAVVAQPADDLARIPVGPAMLVV 121 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 V D P NIG ++RSA AF G+I T + ++ +G+L +P +R+ + Sbjct: 122 VFDRPKTPGNIGTLIRSADAFGASGVIITGHAADPYDPKAVRATTGSLFALPVVRVPSHR 181 Query: 197 DALQK------MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 D L Q IG + + L++G E GL QE + Sbjct: 182 DVLDWVAAVRADGLPQVQIIGTDEHGDVDVAEHDLTGPTLLLIGNETHGLSKGWQEASDR 241 Query: 251 MAHLHMPG----------IIKALNVSNAAAVALYITQNHFAK 282 M + + G VALY A+ Sbjct: 242 MVRIPIVGAASSLNAAAAGT----------VALYEAARQRAE 273 >gi|253686540|ref|YP_003015730.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753118|gb|ACT11194.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 154 Score = 85.3 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R A C + E L ++ H Sbjct: 1 MFHIALYEPQIAPNTGNIIRLAANNGCTLHLIEPLGFDFEEKKLRRAGLDY--HDLANVS 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 + G + ++ +P +Q L+ G+E GL + + + Sbjct: 59 RHKNYQDFLAAVPGKRIFACTTKGSRPYDQPAYQPGDVLLFGSETSGLPDEIRNGFESDF 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ Y Sbjct: 119 RIRIPMQSNNRSLNLSNAVAIISYEAWRQ 147 >gi|126314205|ref|XP_001370297.1| PREDICTED: similar to RNA methyltransferase like 1 [Monodelphis domestica] Length = 517 Score = 85.3 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 45/314 (14%), Positives = 91/314 (28%), Gaps = 56/314 (17%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 Y + R K+ + + + + L G ++ AL + + Sbjct: 96 LRYERALPGDRRLSKVMTIVKSRSFRDKQGKILLEGRRLIADALRAGAVPRTVFFSRLEY 155 Query: 78 LARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLL 135 + L D VK + +V + + A + P + LL Sbjct: 156 VKELPADKLKGVSLIKVKFDDIKEWSDLVAPQGIMGIFAKPDHVKMKYPETQLEYSLPLL 215 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++ D++ DP N+G ILRSA C ++ TK + + ++ GA +P I Sbjct: 216 LICDNLRDPGNLGTILRSAAGAGCQKVLLTKGCVDAWEPKVLRAGMGAHFQVPIISNLEW 275 Query: 196 TDALQKMHSWGFQT---------------------------------------------- 209 Sbjct: 276 ETIPNYFPPDTRVHVADNCGLHTRALAQRAGKASDQGWVCDRRFQKHLKYEEVDDPEEGE 335 Query: 210 ----IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIK 261 L +P + + A+++G E G+ ++ A + + + Sbjct: 336 VPADSWLPELQVQPYDAAWTDAPAAVVIGGETHGVSLESLHLAESTGGKRLLIPVVPGVD 395 Query: 262 ALNVSNAAAVALYI 275 +LN + AA++ L+ Sbjct: 396 SLNSAMAASILLFE 409 >gi|323335423|gb|EGA76709.1| Mrm1p [Saccharomyces cerevisiae Vin13] gi|323346586|gb|EGA80873.1| Mrm1p [Saccharomyces cerevisiae Lalvin QA23] Length = 412 Score = 85.3 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 60/329 (18%), Positives = 100/329 (30%), Gaps = 74/329 (22%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF-------------LYGVHTVSAAL 61 K +H KL+ + K NQKS + +YG ++V AAL Sbjct: 81 KKKAHVEKLK----EIKNQAKLNQKSHKSKFQNKDIALKLMNDNPIFEYVYGTNSVYAAL 136 Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH---------- 111 NPSR L + + V ++ + + Sbjct: 137 LNPSRNCHSRLLYHGTIPSKILQIVDEMKVTTELVDKHRLNLLTNYGVHNNIALETKPLQ 196 Query: 112 -----------------------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 L T + L + LD + DPHNIG Sbjct: 197 PVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGLYLDEITDPHNIG 256 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--------------LEHIPYIRISN 194 AI+RSA D I+ ++R + V++K++SGA Sbjct: 257 AIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPLEFFTKSQEMGGW 316 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + + S L + L++G E +G+R + + + Sbjct: 317 TFITSHLANXTSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRTNLKMRSDFFVEI 376 Query: 255 HMPG----------IIKALNVSNAAAVAL 273 G I+ +LNVS A A+ + Sbjct: 377 PFGGIEKGNRAPEPIVDSLNVSVATALLI 405 >gi|151945292|gb|EDN63535.1| mitochondrial rRNA methyltransferase [Saccharomyces cerevisiae YJM789] gi|207341047|gb|EDZ69213.1| YOR201Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256269588|gb|EEU04870.1| Mrm1p [Saccharomyces cerevisiae JAY291] gi|323331535|gb|EGA72950.1| Mrm1p [Saccharomyces cerevisiae AWRI796] gi|323352137|gb|EGA84674.1| Mrm1p [Saccharomyces cerevisiae VL3] Length = 412 Score = 85.3 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 60/329 (18%), Positives = 101/329 (30%), Gaps = 74/329 (22%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF-------------LYGVHTVSAAL 61 K +H KL+ + K NQKS + +YG ++V AAL Sbjct: 81 KKKAHVEKLK----EIKNQAKLNQKSHKSKFQNKDIALKLMNDNPIFEYVYGTNSVYAAL 136 Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH---------- 111 NPSR L + + V ++ + + Sbjct: 137 LNPSRNCHSRLLYHGTIPSKILQIVDEMKVTTELVDKHRLNLLTNYGVHNNIALETKPLQ 196 Query: 112 -----------------------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 L T + L + LD + DPHNIG Sbjct: 197 PVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGLYLDEITDPHNIG 256 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--------------LEHIPYIRISN 194 AI+RSA D I+ ++R + V++K++SGA Sbjct: 257 AIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPLEFFTKSQEMGGW 316 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 ++ + + S L + L++G E +G+R + + + Sbjct: 317 TFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRTNLKMRSDFFVEI 376 Query: 255 HMPG----------IIKALNVSNAAAVAL 273 G I+ +LNVS A A+ + Sbjct: 377 PFGGIEKGNRAPEPIVDSLNVSVATALLI 405 >gi|86149717|ref|ZP_01067947.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597269|ref|ZP_01100504.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 84-25] gi|218561834|ref|YP_002343613.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839985|gb|EAQ57244.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190330|gb|EAQ94304.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 84-25] gi|112359540|emb|CAL34324.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315928789|gb|EFV08060.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp. jejuni 305] Length = 227 Score = 85.3 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG L I +L K ++ + F +K + +T + K Sbjct: 2 IVYGKQIFFYILEYHKDCINELYLAKECD-KITFSKIAKSGFKIKKLDFKT-AQAYAKGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG L+ L+ ++ + +++L ++D NIGAI R+A A +I Sbjct: 60 NHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKL 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 E + +++SGA +P + ++ + ++ GF K+ +I N K Sbjct: 120 AME--GVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYASDGSGKEIHSVKISNGKK 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L+LG+EG GL K + + M +LNVS A A+ Sbjct: 178 VLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 221 >gi|83590714|ref|YP_430723.1| RNA methyltransferase TrmH, group 2 [Moorella thermoacetica ATCC 39073] gi|83573628|gb|ABC20180.1| RNA methyltransferase TrmH, group 2 [Moorella thermoacetica ATCC 39073] Length = 155 Score = 85.3 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 3/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ + + L ++ E + + Sbjct: 1 MPLHVVLYQPEIPQNTGNIARTCALTGTFLHLIHPLGFRLDEKHLKRAGLDYWEEVNILE 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250 S + + + L+ G E +GL E A Sbjct: 61 HSTWAAFREAYPDANCYYLSTKGQRRYTK--VDYRPDDFLVFGPETRGLPASILEPAGDR 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M +++LN++N+ A+ LY Sbjct: 119 VLRVPMRPGLRSLNLANSVAIVLYEALRQL 148 >gi|303247228|ref|ZP_07333502.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio fructosovorans JJ] gi|302491387|gb|EFL51275.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio fructosovorans JJ] Length = 156 Score = 85.3 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 2/148 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G++ R A + E L ++ ++ Sbjct: 1 MIEVVLYEPEIPQNTGSVARLCAAAKTPLHLIKPLGFSLEDRYLKRAGLDYWPYVDLTVW 60 Query: 193 SNLTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 D L T G + P +LI G E +GL + A+ Sbjct: 61 DRFDDYLAARPRNRLVATTAGNRGHTAVPYHTLAYTPNDSLIFGTESRGLPESLLDAASI 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278 + + G +++LN++NAA++ LY Sbjct: 121 RLRIPIWGHVRSLNLANAASIVLYEALR 148 >gi|268318179|ref|YP_003291898.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252] gi|262335713|gb|ACY49510.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252] Length = 259 Score = 85.3 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 84/223 (37%), Gaps = 12/223 (5%) Query: 58 SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 A L +++FQ A + L + V P I + Sbjct: 6 EARLQQELQRVFQAAAQQGHLTDPEALVARLQG-----VSPDVIVAWLQPYLT-----ER 55 Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + LD R ++ V++ + + N+ A++RSA A G K Sbjct: 56 RRQRIEQVLDG-RTYTVVPVVEGLANTGNVSAVMRSAEALGYQGFGIIKGQVQKYKTSER 114 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 A GA + + +A+ + + G++ + + + +P++ AL+ G E Sbjct: 115 T-AQGADKWLDVWTWPTAAEAVPALKAAGYRIVATALEEAEPIDTFDFTVPTALVFGNEV 173 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +G+ + A + + + G ++ N+S AAA+ALY Q Sbjct: 174 EGVSRELLAMADARCVIPIVGFTQSFNISVAAAIALYHAQRDR 216 >gi|254707158|ref|ZP_05168986.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|254709299|ref|ZP_05171110.1| RNA methyltransferase [Brucella pinnipedialis B2/94] gi|256030822|ref|ZP_05444436.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|261314635|ref|ZP_05953832.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261316808|ref|ZP_05956005.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94] gi|265987878|ref|ZP_06100435.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|261296031|gb|EEX99527.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94] gi|261303661|gb|EEY07158.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|264660075|gb|EEZ30336.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1] Length = 176 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 24/55 (43%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 N + LI+G E +GL +A + G +LN++ A V LY + Sbjct: 113 YANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRR 167 >gi|300112981|ref|YP_003759556.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113] gi|299538918|gb|ADJ27235.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus watsonii C-113] Length = 161 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G I+R + + L ++ H Sbjct: 1 MFHVILLEPEIPPNTGNIIRLCANTGAMLHLVQPLGFELDDRRLRRAGLDY--HEWAKVK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + + Q S+ + ++ AL+ G E +GL + Sbjct: 59 VHPSLEHFLVQTQPRQLWACSTRGRHSYDKANFRPGDALLFGPETRGLPRELLGILPPQQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M ++LN+SNA AV LY Sbjct: 119 VLRIPMEPTSRSLNLSNAVAVVLYEAWRQ 147 >gi|239623216|ref|ZP_04666247.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522182|gb|EEQ62048.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 167 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 1/145 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ VA + L ++ + + S+ Sbjct: 3 VVLLEPEMPSNTGNIGRTCVATQTRLHLIEPLGFKLNEKALKRAGLDYWDKLDVTVYSDY 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254 D L++ + ++ + K L+ G E G+ + E + Sbjct: 63 QDFLERNPDALGRMYFATTKAHKVYSDMKYETDCYLMFGKESAGIPEEILVENEDHCVRI 122 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 M G I++LN+SN+ ++ LY Sbjct: 123 PMWGDIRSLNLSNSVSIVLYEALRQ 147 >gi|190407514|gb|EDV10781.1| ribose methyltransferase for mitochondrial 21S rRNA [Saccharomyces cerevisiae RM11-1a] Length = 385 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 60/329 (18%), Positives = 101/329 (30%), Gaps = 74/329 (22%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF-------------LYGVHTVSAAL 61 K +H KL+ + K NQKS + +YG ++V AAL Sbjct: 54 KKKAHVEKLK----EIKNQAKLNQKSHKSKFQNKDIALKLMNDNPIFEYVYGTNSVYAAL 109 Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH---------- 111 NPSR L + + V ++ + + Sbjct: 110 LNPSRNCHSRLLYHGTIPSKILQIVDEMKVTTELVDKHRLNLLTNYGVHNNIALETKPLQ 169 Query: 112 -----------------------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 L T + L + LD + DPHNIG Sbjct: 170 PVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGLYLDEITDPHNIG 229 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--------------LEHIPYIRISN 194 AI+RSA D I+ ++R + V++K++SGA Sbjct: 230 AIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPLEFFTKSQEMGGW 289 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 ++ + + S L + L++G E +G+R + + + Sbjct: 290 TFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRTNLKMRSDFFVEI 349 Query: 255 HMPG----------IIKALNVSNAAAVAL 273 G I+ +LNVS A A+ + Sbjct: 350 PFGGIEKGNRAPEPIVDSLNVSVATALLI 378 >gi|328542786|ref|YP_004302895.1| RNA methyltransferase, TrmH family [polymorphum gilvum SL003B-26A1] gi|326412532|gb|ADZ69595.1| RNA methyltransferase, TrmH family [Polymorphum gilvum SL003B-26A1] Length = 157 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 53/144 (36%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L N P N G ILR A + P + L ++ LE IR + Sbjct: 4 LALFQPNIPQNTGTILRLAACMGVAVHLIEPAGFPLSDSALRRTGMDYLERAALIRHLDW 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + G + + L++ S P L+ G E G+ E A + + Sbjct: 64 PAFEAWRRAEGRRLVLLTTKSADPYPHFPFQVSDILLFGRESAGVPAAVHEAADARLTIP 123 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 M +++LNV+ +AA+ L Sbjct: 124 MVAGLRSLNVAVSAAMVLGEALRQ 147 >gi|302346532|ref|YP_003814830.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC 25845] gi|302151157|gb|ADK97418.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC 25845] Length = 240 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 34/255 (13%), Positives = 83/255 (32%), Gaps = 24/255 (9%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K ++S K + + G V+ L+ L ++ Sbjct: 6 KIKLIRSLETK-KGREKVGLFVAEGPKVVNDLLHEGFVADEILEDIED------------ 52 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 +K V + V + + ++QL++ LD V DP N+G Sbjct: 53 ----IKKVSFLQHPQPVLGVFKMPEEDSKVTNDYLSLFNKYIDNQLVLALDGVQDPGNLG 108 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I ++ + + + ++ G++ + ++ + Sbjct: 109 TIIRIADWFGIENIFSSYETADCWNPKVVQATMGSIARVKLHYLNLN---ELIDYLPVDY 165 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264 I + + + + +++G EG G+ + + + ++LN Sbjct: 166 PIYATLLDGNNIYSQELSRHGMIVMGNEGNGISSQLRTKINRKLLIPNYPPERETAESLN 225 Query: 265 VSNAAAVALYITQNH 279 V+ A ++ + Sbjct: 226 VAIATSIVCAEFRRR 240 >gi|154174304|ref|YP_001407505.1| RNA methyltransferase [Campylobacter curvus 525.92] gi|112803838|gb|EAU01182.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter curvus 525.92] Length = 226 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 85/224 (37%), Gaps = 5/224 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG L+ + I ++ +K +L + V Q + + Sbjct: 2 IIYGKQLFLHILDKHPQTIEEIYLSKECDKKLFSRIC-GVGKHISRVDNQKAQSLA-RGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG + ++ ++ + VL ++D NIGAI RSA A C+G+I + Sbjct: 60 NHQGFLAKVGEYEFAAMNELKKMSFIAVLYGISDVGNIGAITRSAYALGCEGLIVVAKSI 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 E AS + I + +L + ++ + K + + + K Sbjct: 120 NME---GVLRASSGAAYEIPIALFEDGLSLLNELKQSGFCLYATASNGKNVHEMKFDPKR 176 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ALI+G+E +G+ K + + +LNVS A A+ Sbjct: 177 ALIMGSESEGIPQKALAKCDECVGIKLKEGWDSLNVSAAFAIIC 220 >gi|253582260|ref|ZP_04859483.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725] gi|251835799|gb|EES64337.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725] Length = 152 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + ++ +K+ ++ G E +G+ + Sbjct: 50 YWHLVDLKIWESYEDFINGNPDAVIYYATTKTKQRYTDIKFKKNDFVMFGPESRGIPEEI 109 Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + A + M + ++LN+SN+AA+ LY Sbjct: 110 LNKNADHCITIPMIDMGRSLNLSNSAAIILYEALRQ 145 >gi|86153786|ref|ZP_01071989.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613667|ref|YP_999878.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81-176] gi|167004845|ref|ZP_02270603.1| RNA methyltransferase, TrmH family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|85842747|gb|EAQ59959.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250040|gb|EAQ72998.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 81-176] Length = 227 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG L I +L K ++ + F +K + +T + K Sbjct: 2 IVYGKQIFFYILEYHKDCINELYLAKECD-KITFSKIAKSGFKIKKLDFKT-AQAYAKGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG L+ L+ ++ + +++L ++D NIGAI R+A A +I Sbjct: 60 NHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKL 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 E + +++SGA +P + ++ + ++ GF K+ +I N K Sbjct: 120 AME--GVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYASDGSGKEIHSVKINNGKK 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L+LG+EG GL K + + M +LNVS A A+ Sbjct: 178 VLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 221 >gi|196231420|ref|ZP_03130279.1| tRNA/rRNA methyltransferase (SpoU) [Chthoniobacter flavus Ellin428] gi|196224756|gb|EDY19267.1| tRNA/rRNA methyltransferase (SpoU) [Chthoniobacter flavus Ellin428] Length = 151 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMPGIIKALNVSN 267 L++ ++P E D L+ G E KGL E+ + M ++LN++ Sbjct: 76 YFYLTTKVQRPYWDEQFRDGDFLVFGRETKGLPEPLLESNRDRCLTIPMTPQTRSLNLAT 135 Query: 268 AAAVALYITQNHFAK 282 + + LY K Sbjct: 136 SVGIVLYEAVRQLRK 150 >gi|239826057|ref|YP_002948681.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. WCH70] gi|239806350|gb|ACS23415.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. WCH70] Length = 157 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + ++ +L ++ ++ Sbjct: 1 MPLHVVLYQPEIPANTGNIARTCAATDTALHLIRPLGFSTDDKMLKRAGLDYWPYVNISY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQE-TAT 249 +L + ++ + F I +K + G E GL E Sbjct: 61 YDSLEELFERYPNGEFYFITKFGKKYYDSFDFSDMEKDHFFVFGRETTGLPKDLLEANMD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 121 RCLRIPMNDKVRSLNLSNTAAILVYEALRQ 150 >gi|49474493|ref|YP_032535.1| RNA methyltransferase [Bartonella quintana str. Toulouse] gi|49239997|emb|CAF26411.1| RNA methyltransferase [Bartonella quintana str. Toulouse] Length = 157 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 50/149 (33%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L + L + N G ILR + F I L ++ LE+ R Sbjct: 1 MMLHIALFQPDIAGNTGTILRLSACFGLHVHIIEPAGFSLSDRNLKRAGMDYLEYASLNR 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + M + + + LS+ ++ Q + L+ G E G+ E Sbjct: 61 HIDWQSFMSTMKHFNRRLLLLSTKAETCYTQIYYRENDVLLFGRESAGVPDYVHEAVDHS 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN++ + A+ Sbjct: 121 LKIPMQPHARSLNLAMSVAITTGEALRQI 149 >gi|148241671|ref|YP_001226828.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RCC307] gi|147849981|emb|CAK27475.1| tRNA (Guanosine-2'-O-)-methyltransferase [Synechococcus sp. RCC307] Length = 229 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A +LGAE GL + + + M G++++LNVS AAA L+ Sbjct: 107 YRSCDFTKPSAFVLGAEKWGLTAEAGDAVDQPVFIPMSGMVQSLNVSVAAATLLFEAVRQ 166 Query: 280 F 280 Sbjct: 167 R 167 >gi|308068197|ref|YP_003869802.1| tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681] gi|305857476|gb|ADM69264.1| Hypothetical tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681] Length = 154 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 3/149 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + ++ A L ++ + Sbjct: 1 MPLHIVLVEPEIPANTGNIARTCAATGTHLHLVKPLGFRTDDATLKRAGLDYWYAVHIEY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 + + +K F ++ + D L+ G E KGL P+ A + Sbjct: 61 HESFAEVQEKYQEGRFFYATTKANQRYSD--IAFQDGDFLVFGKETKGLPPELLAANADT 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN+AA+ +Y Sbjct: 119 CIKMPMSDKVRSLNLSNSAAIIVYEALRQ 147 >gi|297564496|ref|YP_003683468.1| tRNA/rRNA methyltransferase SpoU [Meiothermus silvanus DSM 9946] gi|296848945|gb|ADH61960.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus silvanus DSM 9946] Length = 153 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 3/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I R+ A + + + L ++ +H+ Y+ Sbjct: 1 MLKVVLYQPEIPQNAGNIARTCAAAAAELHLIRPLGFRWGDPKLKRAGLDYWDHLHYVLH 60 Query: 193 SNLTDALQKM--HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + ++K + + SS + + + L+ G E +GL + E Sbjct: 61 DSWEAFVEKALAGARQSRVWAFSSKATQDYTRVPYQPGDYLLFGPETRGLPKEVLEQF-P 119 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + MPG +++LN++ + + L+ Sbjct: 120 SVTIPMPGKVRSLNLAVSVGIGLFEALRQL 149 >gi|297836270|ref|XP_002886017.1| hypothetical protein ARALYDRAFT_480484 [Arabidopsis lyrata subsp. lyrata] gi|297331857|gb|EFH62276.1| hypothetical protein ARALYDRAFT_480484 [Arabidopsis lyrata subsp. lyrata] Length = 577 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 127/321 (39%), Gaps = 53/321 (16%) Query: 8 KSEKIFSLKDSHYAKLR-RNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTV 57 + +I + + + + + ++ Y+ R T Q E +YGV V Sbjct: 251 RWSEIKNRFNRYDVRDQGHDNAAYRNWNRQESWGRKTWQEATESSVPRLEGEVVYGVSPV 310 Query: 58 SAALNNPSRKIFQLLATKNAL-------------ARLDWDANLPHPFPVKTVPPQTIDKI 104 AAL+ R+ + L + + +K ++ + Sbjct: 311 LAALSVGRREFYALYVQEGLDLSSNNRKKKDKKGFEKVLKISEKLGLNLKETSKHDLN-M 369 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157 V HQGL L+ +PL + + L + LD V DP N+GAI+RSA F Sbjct: 370 VADNRPHQGLVLDASPLELVKVKELDPISSEEEKSSLWVALDEVTDPQNLGAIIRSAYFF 429 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 G++ + S SAV++K+++G+LE + N+ L+ G++ +G S K Sbjct: 430 GATGVVVCAKNSAPLSAVVSKASAGSLEVMELRYCKNMMQFLEASAENGWRVVGGSVSPK 489 Query: 218 KPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHL--HMPGI--------------- 259 E+ L+LG EG GLRP + + T + + +MP Sbjct: 490 AVALNEVLPGSPTILVLGNEGTGLRPLVERSCTELVRISGNMPNDVSVTESDDAEGEGFR 549 Query: 260 ----IKALNVSNAAAVALYIT 276 +++LNVS AA + L+ Sbjct: 550 SFLAVESLNVSVAAGLFLHHL 570 >gi|220903658|ref|YP_002478970.1| TrmH family RNA methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867957|gb|ACL48292.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 268 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 57/247 (23%), Positives = 91/247 (36%), Gaps = 26/247 (10%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 G+ V L++ +++ + K + R D + V +D++ Sbjct: 13 GLKPVLELLSSDPQRVDCVFCKKGLRSPEAREVQDLCRKNDIRFTLVEQAALDRLCRPGG 72 Query: 110 V--------------HQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGA 149 HQG+ A L+ +++ LD V DP N+G Sbjct: 73 PRRGDAREAGRDAVAHQGVVARLAATSFCELEHIFAAVEQAPLPIILALDQVQDPGNVGT 132 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 + R+ A GII + S +SA+GALEH+P R++NL AL G Sbjct: 133 LCRTLYALGGAGIILPRHNSAYLGPAARRSAAGALEHLPVARVTNLGHALDSAEEAGLTI 192 Query: 210 IGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 G + L+LG E KGLRP + M + + +LNV+ Sbjct: 193 YGAGGQNGPASVDAFAEPVRLPAVLVLGNEEKGLRPGIVKRCAHMLRIPLARSFDSLNVA 252 Query: 267 NAAAVAL 273 A A+ L Sbjct: 253 QAGAILL 259 >gi|329769782|ref|ZP_08261183.1| hypothetical protein HMPREF0433_00947 [Gemella sanguinis M325] gi|328838144|gb|EGF87762.1| hypothetical protein HMPREF0433_00947 [Gemella sanguinis M325] Length = 170 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 1/148 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++++D V DP N+G I+R+A AFS D II K + + +S G+ HI Sbjct: 20 SKYSRVLIIDQVQDPGNLGTIIRTADAFSFDCIILGKGTTSIYGQKVIRSTQGSNFHIDC 79 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ D + KM + L D + +K+A+I G EG G+ + + Sbjct: 80 FDNIDILDVIPKMEDFDLYATSLKGDRYLEQIDSV-GEKVAVIFGNEGSGVSEEILDKVN 138 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ ++M G ++LNV+ AA + ++ Sbjct: 139 NLLKINMTGQAESLNVAVAAGIVMHYIA 166 >gi|239832469|ref|ZP_04680798.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG 3301] gi|239824736|gb|EEQ96304.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG 3301] Length = 279 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 114/272 (41%), Gaps = 18/272 (6%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSR 66 + + D +L Y+ ++ + R + G V L ++ Sbjct: 12 HPCVHPIDDPDDIRLSP----YRSIREKDLVGR----QQRFIAEG-KVVLNVLFSSSARF 62 Query: 67 KIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125 + LL +N LA L LP PV +VP +D + G VH+G+ P Sbjct: 63 ETESLLVLENRLAGLGEQLGQLPPDVPVYSVPQAVMDAVAGFH-VHRGILAVGRRKPQPG 121 Query: 126 LDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 L+A+ L++VL +++ N+G+I R+A AF D ++ + + + Sbjct: 122 LEAMLGALPAKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSV 181 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 GA +PY N+ + + + F + LS S + K D+ AL+LG EG+GL Sbjct: 182 GATLKVPYFHGGNIDEIIAALGDANFNLLALSPSSTLSIYDAAKQDRHALLLGTEGEGLP 241 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 P+ A + M +LNV+ A+ +AL Sbjct: 242 PRLLGKL-QTARIPMSTAFDSLNVATASGIAL 272 >gi|193214880|ref|YP_001996079.1| tRNA/rRNA methyltransferase SpoU [Chloroherpeton thalassium ATCC 35110] gi|193088357|gb|ACF13632.1| tRNA/rRNA methyltransferase (SpoU) [Chloroherpeton thalassium ATCC 35110] Length = 272 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 87/250 (34%), Gaps = 6/250 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + +K + + + + G+ TV+ L+ + + + D Sbjct: 17 KQKRKFFARLHDKKFREKEQLFLAEGLRTVTELLSACNAEDDLVAIVVKVPIDNDLKKPD 76 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS----PTLDAVRNSQLLMVLDHVND 143 + V + I E + + P + + L+++ D + D Sbjct: 77 CNAGKVFVAEKSDFETISATEQTQGVVGIFRQPKADEASVFQQLEEKKTALVLIWDGIQD 136 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N G ++R+A F D I + + + ++++G+L + S + Sbjct: 137 PGNAGTMIRTAAWFGADAIFASHDSVDFFNPKVVRASAGSLF-ALPLIKSASLGFVVDEL 195 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-IKA 262 T+ SS + + + K K ALI+G+E G+ + +++ Sbjct: 196 KQKRLTVYASSPAGTSIWEVSKPKKTALIIGSEANGVTSALFLKTDQQITIPGNSSAVES 255 Query: 263 LNVSNAAAVA 272 LN + +A + Sbjct: 256 LNAAISAGIL 265 >gi|88810460|ref|ZP_01125717.1| rRNA methylase SpoU [Nitrococcus mobilis Nb-231] gi|88792090|gb|EAR23200.1| rRNA methylase SpoU [Nitrococcus mobilis Nb-231] Length = 209 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 50/151 (33%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L ++LD VN PHN+ AILR+ A + SA Sbjct: 8 RQPDLRVLLDQVNKPHNLAAILRTCDAVGVFQA-HAVWPGGVPAVHHHSSAGVGKWVNVV 66 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + Q A+++GAE G+ + Sbjct: 67 AHPDVCSAIQALHNEGLRVYAAHPVAGAVDYRQADYTVPCAVLMGAELWGVSEAACQRVD 126 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G+ ++NVS AAAV LY Q Sbjct: 127 EFITIPMFGLGASVNVSVAAAVILYEAQRQR 157 >gi|312897975|ref|ZP_07757384.1| RNA methyltransferase, TrmH family, group 2 [Megasphaera micronuciformis F0359] gi|310620900|gb|EFQ04451.1| RNA methyltransferase, TrmH family, group 2 [Megasphaera micronuciformis F0359] Length = 160 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 3/148 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +V+ P N G + R A + E L ++ + + Sbjct: 1 MHVVMVEPEIPGNTGNVSRLCAANHITLHLVKPLGFSLEDKYLKRAGLDYWDLLDLHVHE 60 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMA 252 N + Q+ + + + SD + + L+ G E KGL + A Sbjct: 61 NFEEVQQQYPNSRYFYLTTKSDKSYTD--IVFREDDMLVFGKETKGLPEDLLKRNADYCF 118 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ Y Sbjct: 119 RIPMIDKARSLNLSNAVAIVSYEALRQL 146 >gi|229009971|ref|ZP_04167188.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048] gi|229022085|ref|ZP_04178639.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH1272] gi|229028341|ref|ZP_04184470.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH1271] gi|229056322|ref|ZP_04195740.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH603] gi|229095197|ref|ZP_04226189.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29] gi|229101299|ref|ZP_04232047.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28] gi|229114145|ref|ZP_04243566.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3] gi|229159633|ref|ZP_04287645.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus R309803] gi|229165485|ref|ZP_04293267.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH621] gi|229171329|ref|ZP_04298916.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus MM3] gi|228612148|gb|EEK69383.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus MM3] gi|228617990|gb|EEK75033.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH621] gi|228623837|gb|EEK80651.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus R309803] gi|228669165|gb|EEL24586.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3] gi|228682123|gb|EEL36252.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28] gi|228688056|gb|EEL41942.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29] gi|228720990|gb|EEL72532.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH603] gi|228732971|gb|EEL83824.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH1271] gi|228739237|gb|EEL89679.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH1272] gi|228751309|gb|EEM01118.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048] Length = 162 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R+ A + + ++ +L ++ +H+ Sbjct: 1 MGVHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKVTY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQE-TAT 249 ++ + +K F + + K +K + G E GL E Sbjct: 61 YDSIEEFYEKNKDGEFFYLTKYGEKAHTAFDYSKREKDYYFVFGRETNGLPANVIEENFD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M +++LN+SN AA+ +Y Sbjct: 121 HCLRIPMTDKVRSLNLSNTAAILIYEAFRQQN 152 >gi|116328523|ref|YP_798243.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331251|ref|YP_800969.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121267|gb|ABJ79310.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124940|gb|ABJ76211.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 253 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 96/241 (39%), Gaps = 13/241 (5%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQ-----LLATKNALARLDWDA--NLPHPFPVKTVPP 98 + +++G T+ K L +N + LP V + Sbjct: 6 TRSEYIFGKRTLIELTEAHIGKEHSFPFTDLYVKENPGTDIVEKILNRLPSFVKVHRISG 65 Query: 99 QTIDKIVGKEAVH------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 +D +V + + + +VLD + DP N+G ILR Sbjct: 66 SKLDSLVPGRNHQGVVALKSPFRQQISDKKNLEEYLSEKPGTFLVLDRIQDPGNLGNILR 125 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A F II +R S + V+ K +SGAL + + NL + L+ + G+ + Sbjct: 126 TAECFGVTNIILPERESAGITPVVEKVSSGALSFLKIFTVKNLANTLELLKENGYWIVST 185 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 S + + + ++A+++G EG+G++ E + + + + G + +LNV+ A + Sbjct: 186 SDRGTENWSKLPELKELAILMGNEGEGVKRILLEKSDFVLRIPIHGNLSSLNVTVATGIV 245 Query: 273 L 273 L Sbjct: 246 L 246 >gi|159902962|ref|YP_001550306.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9211] gi|159888138|gb|ABX08352.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9211] Length = 229 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A +LGAE GL + ++ M G++++LNVS AA+ L+ Sbjct: 107 YRYCDYTGPTAFVLGAEKWGLSEPATRLMDAAIYIPMRGMVQSLNVSVAASALLFEALRQ 166 Query: 280 F 280 Sbjct: 167 R 167 >gi|288802421|ref|ZP_06407860.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica D18] gi|288334949|gb|EFC73385.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica D18] Length = 240 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 36/255 (14%), Positives = 82/255 (32%), Gaps = 24/255 (9%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K + S K + + G V+ L+ L ++ Sbjct: 6 KIKLIHSLETK-KGREKVGLFVAEGPKVVNDLLHEGFVADEILEDIED------------ 52 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 +K V + V + + ++QL++ LD V DP N+G Sbjct: 53 ----IKKVSFLQHPQPVLGVFKMPEEDCKVTNDYLSLFNEYIDNQLVLDLDGVQDPGNLG 108 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I+R A F + I + + + + ++ G++ + ++ H Sbjct: 109 TIIRIADWFGIENIFCSHETADCWNPKVVQATMGSIARVKLHYLNLN---ELIDHLPIDY 165 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264 I + + + + +++G EGKG+ + + + ++LN Sbjct: 166 PIYATLLDGNNIYSQELSHHGMIVMGNEGKGISSQLRTKINRKLLIPNYPPERETAESLN 225 Query: 265 VSNAAAVALYITQNH 279 V+ A ++ + Sbjct: 226 VAIATSIVCAEFRRR 240 >gi|159903887|ref|YP_001551231.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9211] gi|159889063|gb|ABX09277.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9211] Length = 285 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 86/268 (32%), Gaps = 17/268 (6%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R + +++++ + + S L L G H + AL N S + +K Sbjct: 6 SRRNPLVRRLRALST-PKGRSIESLLLLEGTHLLEEALKNGSIPEEIIATSKWLENHSRI 64 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 LP V + + G+A + P L + L++ D + D Sbjct: 65 LEFLPKNVQFHLVTASVL-QASLTTVTPDGVASLLSLSALPKLKHSPDFILVL--DRLQD 121 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSES-------------AVLAKSASGALEHIPYI 190 P N+G + R+A+A D + P + S + + Sbjct: 122 PGNVGTLFRTALAADIDALWLALGADPLSQKVLRSSAGAVLKLPFERLADSEDIAIDGLV 181 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + S P + L+LG EG GL P+ Q T Sbjct: 182 DKLRGVSQEGYQVVATYVAGKPSDFEVIPYWELDWIKPTVLVLGNEGSGLSPRIQACCTH 241 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278 L +++LNV+ AAA L + Sbjct: 242 GVTLPHSEAVESLNVAVAAAPLLLERRR 269 >gi|182677154|ref|YP_001831300.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp. indica ATCC 9039] gi|182633037|gb|ACB93811.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp. indica ATCC 9039] Length = 179 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 55/146 (37%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++ L + P N G +LR + I P ++ L+ + R Sbjct: 19 LMLALYQPDIPQNCGTMLRLCACLGVEAAIIEPAGFPVSDRHFRRAGMDYLDQVALSRHV 78 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + T G + + LS+ + +P L++G E G+ +A + Sbjct: 79 SFTAFRAWQIETGRRLVLLSTKASQPYTDFTFRPDDILLMGRESAGVPEAVHASADARVV 138 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 + + +++LNV+ AAA+ L Sbjct: 139 IPLRPPMRSLNVAVAAAMVLGEALRQ 164 >gi|30018734|ref|NP_830365.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus ATCC 14579] gi|30260705|ref|NP_843082.1| RNA methyltransferase [Bacillus anthracis str. Ames] gi|42779682|ref|NP_976929.1| RNA methyltransferase [Bacillus cereus ATCC 10987] gi|47525820|ref|YP_017169.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor'] gi|47567107|ref|ZP_00237823.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9241] gi|49183542|ref|YP_026794.1| RNA methyltransferase [Bacillus anthracis str. Sterne] gi|49476831|ref|YP_034807.1| RNA methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144766|ref|YP_082062.1| RNA methyltransferase [Bacillus cereus E33L] gi|65317966|ref|ZP_00390925.1| COG0219: Predicted rRNA methylase (SpoU class) [Bacillus anthracis str. A2012] gi|75761277|ref|ZP_00741258.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118476236|ref|YP_893387.1| RNA methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|165871765|ref|ZP_02216409.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0488] gi|167635710|ref|ZP_02394021.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0442] gi|167640663|ref|ZP_02398924.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0193] gi|170708207|ref|ZP_02898653.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0389] gi|177653797|ref|ZP_02935898.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0174] gi|190568180|ref|ZP_03021089.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis Tsiankovskii-I] gi|196034754|ref|ZP_03102162.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus W] gi|196041372|ref|ZP_03108666.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus NVH0597-99] gi|196046793|ref|ZP_03114015.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus 03BB108] gi|206967640|ref|ZP_03228596.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH1134] gi|206974260|ref|ZP_03235177.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus H3081.97] gi|217958083|ref|YP_002336627.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH187] gi|218234183|ref|YP_002365344.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus B4264] gi|218895602|ref|YP_002444013.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9842] gi|218901687|ref|YP_002449521.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH820] gi|222094299|ref|YP_002528358.1| RNA methyltransferase, trmh family, group 2 [Bacillus cereus Q1] gi|225862525|ref|YP_002747903.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus 03BB102] gi|227816581|ref|YP_002816590.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. CDC 684] gi|228899231|ref|ZP_04063496.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222] gi|228906291|ref|ZP_04070176.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200] gi|228913232|ref|ZP_04076870.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228919409|ref|ZP_04082776.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228925735|ref|ZP_04088820.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931974|ref|ZP_04094867.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228937783|ref|ZP_04100414.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228944300|ref|ZP_04106674.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228951037|ref|ZP_04113157.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228956964|ref|ZP_04118743.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228963633|ref|ZP_04124781.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228970664|ref|ZP_04131308.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977242|ref|ZP_04137639.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407] gi|228983751|ref|ZP_04143948.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229042401|ref|ZP_04190149.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH676] gi|229068232|ref|ZP_04201537.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus F65185] gi|229077845|ref|ZP_04210466.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2] gi|229089609|ref|ZP_04220872.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42] gi|229108153|ref|ZP_04237776.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15] gi|229120143|ref|ZP_04249394.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus 95/8201] gi|229125980|ref|ZP_04255004.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4] gi|229137350|ref|ZP_04265963.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26] gi|229143271|ref|ZP_04271702.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24] gi|229148885|ref|ZP_04277131.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1550] gi|229154256|ref|ZP_04282376.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342] gi|229177075|ref|ZP_04304466.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus 172560W] gi|229182880|ref|ZP_04310114.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1] gi|229188751|ref|ZP_04315788.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876] gi|229194862|ref|ZP_04321646.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1293] gi|229601272|ref|YP_002865150.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0248] gi|254722176|ref|ZP_05183965.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A1055] gi|254738839|ref|ZP_05196542.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. Western North America USA6153] gi|254743776|ref|ZP_05201460.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. Kruger B] gi|254755063|ref|ZP_05207097.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. Vollum] gi|254762203|ref|ZP_05214047.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. Australia 94] gi|296501306|ref|YP_003663006.1| TrmH family RNA methyltransferase [Bacillus thuringiensis BMB171] gi|301052197|ref|YP_003790408.1| TrmA family RNA methyltransferase [Bacillus anthracis CI] gi|29894275|gb|AAP07566.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579] gi|30254073|gb|AAP24568.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. Ames] gi|42735599|gb|AAS39537.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus ATCC 10987] gi|47500968|gb|AAT29644.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. 'Ames Ancestor'] gi|47556163|gb|EAL14498.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9241] gi|49177469|gb|AAT52845.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. Sterne] gi|49328387|gb|AAT59033.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978235|gb|AAU19785.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus E33L] gi|74491236|gb|EAO54471.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118415461|gb|ABK83880.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis str. Al Hakam] gi|164712490|gb|EDR18023.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0488] gi|167511378|gb|EDR86763.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0193] gi|167528969|gb|EDR91725.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0442] gi|170126863|gb|EDS95744.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0389] gi|172081189|gb|EDT66265.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0174] gi|190560672|gb|EDV14648.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis Tsiankovskii-I] gi|195992797|gb|EDX56757.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus W] gi|196022328|gb|EDX61013.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus 03BB108] gi|196027857|gb|EDX66470.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus NVH0597-99] gi|206736560|gb|EDZ53707.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH1134] gi|206747500|gb|EDZ58890.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus H3081.97] gi|217067511|gb|ACJ81761.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH187] gi|218162140|gb|ACK62132.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus B4264] gi|218535766|gb|ACK88164.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH820] gi|218542951|gb|ACK95345.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9842] gi|221238356|gb|ACM11066.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus Q1] gi|225786624|gb|ACO26841.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus 03BB102] gi|227006301|gb|ACP16044.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. CDC 684] gi|228588618|gb|EEK46652.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1293] gi|228594728|gb|EEK52510.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876] gi|228600594|gb|EEK58180.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1] gi|228606397|gb|EEK63827.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus 172560W] gi|228629080|gb|EEK85787.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342] gi|228634584|gb|EEK91167.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1550] gi|228640078|gb|EEK96477.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24] gi|228646110|gb|EEL02331.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26] gi|228657463|gb|EEL13277.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4] gi|228663184|gb|EEL18773.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus 95/8201] gi|228675283|gb|EEL30504.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15] gi|228693727|gb|EEL47427.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42] gi|228705466|gb|EEL57831.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2] gi|228714891|gb|EEL66761.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus F65185] gi|228726948|gb|EEL78157.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH676] gi|228775946|gb|EEM24315.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228782461|gb|EEM30642.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407] gi|228789057|gb|EEM36992.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228796053|gb|EEM43513.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228802719|gb|EEM49557.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228808644|gb|EEM55143.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228815380|gb|EEM61627.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228821889|gb|EEM67886.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228827692|gb|EEM73433.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833928|gb|EEM79480.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228840240|gb|EEM85514.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228846415|gb|EEM91429.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228853314|gb|EEM98086.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200] gi|228860410|gb|EEN04805.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222] gi|229265680|gb|ACQ47317.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0248] gi|296322358|gb|ADH05286.1| RNA methyltransferase, TrmH family,group 2 [Bacillus thuringiensis BMB171] gi|300374366|gb|ADK03270.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus biovar anthracis str. CI] gi|324324583|gb|ADY19843.1| TrmA family RNA methyltransferase [Bacillus thuringiensis serovar finitimus YBT-020] gi|326938265|gb|AEA14161.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis serovar chinensis CT-43] Length = 162 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R+ A + + ++ +L ++ +H+ Sbjct: 1 MGVHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQE-TAT 249 ++ + +K F + + K +K + G E GL E Sbjct: 61 YDSIEEFYEKNKDGEFFYLTKYGEKAHTAFDYSKREKDYYFVFGRETNGLPANVIEENFD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M +++LN+SN AA+ +Y Sbjct: 121 HCLRIPMTDKVRSLNLSNTAAILIYEAFRQQN 152 >gi|240850138|ref|YP_002971531.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup] gi|240267261|gb|ACS50849.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup] Length = 158 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 49/149 (32%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L + L + N G ILR + F I L ++ LE+ R Sbjct: 1 MTLHIALFQPDIAGNTGTILRLSACFGLHVHIIEPAGFNLSDRNLKRAGLDYLEYASLER 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + M + + + LS+ +K Q L+ G E G+ E A Sbjct: 61 HIDWQHFISSMKHFNRRLLLLSTKAKTCYTQICYQKNDVLLFGRETAGVPDYVHEAADYT 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN++ A+ Sbjct: 121 LKIPMQPQARSLNLAMCVAITTGEALRQI 149 >gi|183220250|ref|YP_001838246.1| SpoU family tRNA/rRNA methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910368|ref|YP_001961923.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775044|gb|ABZ93345.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778672|gb|ABZ96970.1| Putative tRNA/rRNA methyltransferase, TrmH (SpoU) family [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 155 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 2/146 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L P N G I R V I + + ++ + + R + Sbjct: 3 IALFRPEIPPNTGNIARLCVNAGVPLSIVGEPAFDLSEKAVRRAGLDYWKDLELHRYPDW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253 ++ + G + +S KK + K + G E GL + + + + Sbjct: 63 DWFQKEKETQGKRIFLVSKFGKKVYWDVSFSSKDVFLFGRETSGLPEEIHKGHPSDQIIS 122 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 + M +++N+SNA A+ LY Sbjct: 123 IPMAESSRSINLSNAVAIILYEALRQ 148 >gi|320537356|ref|ZP_08037311.1| RNA 2'-O ribose methyltransferase substrate binding [Treponema phagedenis F0421] gi|320145821|gb|EFW37482.1| RNA 2'-O ribose methyltransferase substrate binding [Treponema phagedenis F0421] Length = 254 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 85/244 (34%), Gaps = 14/244 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEA 109 + G V A + KI +L T+ D L + V + + + Sbjct: 11 VCGFEAVKALVKQHPEKISRLFFTQERAKAFGDASKYLAAKKRLYRVVEEADLEKLSLSV 70 Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ + P +D ++S +++ LD V + +N+GAI+RSA F +I Sbjct: 71 HHQGVVAMIEEPVIPLIDEQIIDGWAKDSAVVLFLDRVGNSNNLGAIIRSAAFFGIPAVI 130 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA----LQKMHSWGFQTIGLSSDSKKP 219 T ++ A + I + + + + Sbjct: 131 ITDEDPQAKITTSAYRVAQGGMEFVTIYHTRSIQWLLRACEGKITRIGADHRSFRNLNSL 190 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV---ALYIT 276 ++ +ILG E GL +++ + + G I++LNV+ A + AL Sbjct: 191 PTLLSPDEATMIILGNEETGLSEASKKACDHLVKIPGSGAIESLNVAQAGTLFLAALADI 250 Query: 277 QNHF 280 Sbjct: 251 HRQR 254 >gi|283955409|ref|ZP_06372908.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 414] gi|283793169|gb|EFC31939.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 414] Length = 227 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG L +I +L K + + + +K + +T + K Sbjct: 2 IVYGKQIFFYILEYHKDRINELYLAKECD-KATFSKIVKSGLKIKKLDFKT-AQAYAKGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG L+ L+ ++ S +++L ++D NIGAI R+A A +I Sbjct: 60 NHQGFLLDIKEGSFANLNEIKKSDFIVMLYGISDVGNIGAIARTAYALGVGALIFIGEKL 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 E + +++SGA +P + ++ + ++ GF K+ +I N K Sbjct: 120 AME--GVIRTSSGAALDLPIVISNDALSVINELKQIGFYFYASDGSGKEIHNVKINNGKK 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L+LG+EG GL K + + M +LNVS A A+ Sbjct: 178 VLVLGSEGFGLSSKIAKKCDECVGITMKNNFDSLNVSAAFAILC 221 >gi|254491074|ref|ZP_05104255.1| RNA methyltransferase, TrmH family, group 2 [Methylophaga thiooxidans DMS010] gi|224463587|gb|EEF79855.1| RNA methyltransferase, TrmH family, group 2 [Methylophaga thiooxydans DMS010] Length = 157 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L + L P N G I+R + + L ++ H Sbjct: 1 MLHIALFEPEIPPNTGNIIRLCANTGAQLHLIEPLGFALDDKRLRRAGLDY--HEFANLK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 + A + + ++ +++ D+ L+ G E +GL + + TA Sbjct: 59 IHSDFAQFQQWQQQRRVFACTTKARQHHHDVQYQDEDILLFGPESRGLPAEVLDSLTAEF 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA + LY Sbjct: 119 KIRIPMLPDSRSLNLSNATGIILYQAWQQL 148 >gi|86358937|ref|YP_470829.1| RNA methylase protein [Rhizobium etli CFN 42] gi|86283039|gb|ABC92102.1| probable RNA methylase protein [Rhizobium etli CFN 42] Length = 273 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 97/256 (37%), Gaps = 9/256 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYG---VHTVSAALNNPS-RKIFQLLATKNALARL 81 N + + ++ T + G + ++ A ++L +N + L Sbjct: 11 NDPRIAEFRDIRER-DLTGRENRFIAEGTVVLRMLAEAHAARRGFSAEKILLLRNRVDGL 69 Query: 82 DWDANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPTLDAVRNSQLLMVL 138 P PV + +D +VG LA + LDA+ L++V Sbjct: 70 QSVLERFPASVPVYVAEAKVLDGVVGFHLHRGVLALGKREDRGEAALLDALPERALVLVG 129 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 +++ N G++ R+A AF D ++ + + + G++ +P+ R D Sbjct: 130 CGISNHDNAGSMFRNAAAFRADAVLLDETCCDPLYRKALRVSVGSVLSVPHRRGGKALDL 189 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L + GF LS K + ++AL++G EG+GL A + Sbjct: 190 LLALAQRGFAIWTLSPHGKTDIRAIPAAARMALVIGTEGEGLPEALLARF-QSARIPQSD 248 Query: 259 IIKALNVSNAAAVALY 274 + +LN + A +AL+ Sbjct: 249 QLDSLNAATATGIALF 264 >gi|238754752|ref|ZP_04616104.1| Methyltransferase [Yersinia ruckeri ATCC 29473] gi|238707060|gb|EEP99425.1| Methyltransferase [Yersinia ruckeri ATCC 29473] Length = 157 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R C + + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIEPLGFTWDDKRLRRAGLDY--HEFASIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + L++ D L+ G E +GL E A Sbjct: 59 RHHDYQAFLDSEKPDRLFALTTKGTPAHSAVNYQDNDFLLFGPETRGLPASILEALPAQQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMQPNSRSMNLSNAVSVVVYEAWRQL 148 >gi|194334189|ref|YP_002016049.1| tRNA/rRNA methyltransferase SpoU [Prosthecochloris aestuarii DSM 271] gi|194312007|gb|ACF46402.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris aestuarii DSM 271] Length = 181 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 69/151 (45%), Gaps = 2/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + ++L ++ +N+G+I R+A A + +I T + + K+A GA E + + Sbjct: 24 EKHPVTIILHNIRSMYNVGSIFRTADAAGIEKVIITGYTATPPRKEIDKTALGAQETMAW 83 Query: 190 IRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 ++ + + M G ++++S+ + + + + LILG E +G+ E Sbjct: 84 EYFAHPLEVIPAMKEKGIAICGLEITTNSRAYTDVDRSDFPLCLILGNEVQGIDDDILEQ 143 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + G +LNVS AA VAL+ Sbjct: 144 CDHILEIPQFGTKHSLNVSVAAGVALFEMVR 174 >gi|301630620|ref|XP_002944414.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase slr1673-like [Xenopus (Silurana) tropicalis] Length = 278 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 91/256 (35%), Gaps = 10/256 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ K ++ Q S + ++L G H A L R + + Sbjct: 10 SRDNAFVKDLRRLAQDSTAYRKQGRIWLEGDHLCRALLARGQRPAVAVFSASFWSLAQSQ 69 Query: 84 DANL----PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 + + I G EA + + +++ D Sbjct: 70 SQSQSQYTQAAMKNIVLADALWADISGLEAPAPQGMGFVLDRAAAPALQPGVATVVL--D 127 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + D N+G+ILRSA AF ++ K + S + ++ GA L Sbjct: 128 RLQDAGNVGSILRSASAFGFAQVLALKGCAALWSPKVLRAGMGAHF----ALRLIEGGGL 183 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 ++ + G + SS L + A +LG EG+G+ P + A + PG Sbjct: 184 AQIRALGLPLLATSSHQGDYLHRAALPWPCAWVLGHEGQGVAPALEALAAQRIRIAQPGG 243 Query: 260 IKALNVSNAAAVALYI 275 ++LNV+ AAA+ L+ Sbjct: 244 EESLNVAAAAAICLHA 259 >gi|150003712|ref|YP_001298456.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482] gi|254881058|ref|ZP_05253768.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA] gi|319640065|ref|ZP_07994792.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A] gi|149932136|gb|ABR38834.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482] gi|254833851|gb|EET14160.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA] gi|317388343|gb|EFV69195.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A] Length = 178 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 3/161 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L +VLD V HNIG++ R++ AF D I + + K+A GA Sbjct: 16 EFKKADKLPLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 + + N DA+Q++H GF + + + + K A+++G E KG++ Sbjct: 76 YSVEWRYKKNTLDAVQELHDQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + G +LNVS + L+ N K Sbjct: 136 QEVVNACDGCVEIPQYGTKHSLNVSVTTGIILWEFANKLMK 176 >gi|153007162|ref|YP_001381487.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5] gi|152030735|gb|ABS28503.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5] Length = 239 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 54/143 (37%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L +V++ DP N+ A+LR+ AF + + S + Sbjct: 40 NRTRTLTVVMEAFCDPQNVNAVLRTCEAFGIQELHVIEGPMKPYDRNKKISQNADKWVDV 99 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 S + + L+ K+AL+ G E +G+ + + Sbjct: 100 RRWSSTGECLAHLKAEGFAIYATHLGEGARTLDALSFAGKVALVFGNEHRGVSDEAVALS 159 Query: 249 TSMAHLHMPGIIKALNVSNAAAV 271 ++ + M G +++LNVS AAA+ Sbjct: 160 DAVYVIPMHGFVQSLNVSVAAAI 182 >gi|163938472|ref|YP_001643356.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4] gi|229131481|ref|ZP_04260374.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196] gi|163860669|gb|ABY41728.1| RNA methyltransferase, TrmH family, group 2 [Bacillus weihenstephanensis KBAB4] gi|228651981|gb|EEL07925.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196] Length = 162 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R+ A + + ++ +L ++ +H+ Sbjct: 1 MGVHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKVTY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQE-TAT 249 ++ + +K F + + K +K + G E GL E Sbjct: 61 YDSIEEFYEKNKDGEFFYLTKYGEKAHTAFNYSKREKDYYFVFGRETNGLPANVIEENFD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M +++LN+SN AA+ +Y Sbjct: 121 HCLRIPMTDKVRSLNLSNTAAILIYEAFRQQN 152 >gi|283851956|ref|ZP_06369232.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B] gi|283572680|gb|EFC20664.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B] Length = 156 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 2/148 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G++ R A + L ++ H+ Sbjct: 1 MIEVVLFEPEIPQNTGSVARLCAATKTPLHLIKPLGFSLADRYLKRAGLDYWPHVNLTVW 60 Query: 193 SNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 N + AL+ G E +GL +TA + Sbjct: 61 DNFDAFRAARPQSRIVATTAGNRGHTPAAYHVFAYRPDDALVFGTESRGLPESLLDTAGA 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278 + + G +++LN++NAA+V LY Sbjct: 121 RLRIPIWGQVRSLNLANAASVVLYEALR 148 >gi|298253912|ref|ZP_06977499.1| rRNA methylase [Gardnerella vaginalis 5-1] gi|297532055|gb|EFH71030.1| rRNA methylase [Gardnerella vaginalis 5-1] Length = 302 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 50/293 (17%), Positives = 101/293 (34%), Gaps = 43/293 (14%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74 + ++H ++RR + S + H + + G +V A+ + + + T Sbjct: 7 IDNTHSERVRR-------LVSLGRAKSH--DLQRFLVEGPQSVREAVRYVTDSLCDIYVT 57 Query: 75 KNALA------------RLDWDANLPHPFPVKTVPPQTIDKIVGKE-----AVHQGLALE 117 K+A R L V V + KI + + Sbjct: 58 KDACEGNEKESSQFSSLREIVKEALSRSCYVHPVESNIMQKISADSQGIVAVANSKSLDD 117 Query: 118 TAPLLSPTLDAVRNSQL--------LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 L ++ + V DP N GAI+R A CD ++ Sbjct: 118 IYFSEFKNLQQSAQVKVKNDFKSLRIAACWQVRDPGNAGAIIRVADVAGCDAVVFVDDCV 177 Query: 170 PSESAVLAKSASGALEH---------IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +A L +S +G+L H + + + +G I K + Sbjct: 178 SRWNAKLVRSTAGSLFHLPVVQLSVQDWFECAAKANIRVIAADIYGTDKIKPVPFPKILV 237 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 E+ + +A++ G E +GL + + ++ + + G +++N++ +AAV L Sbjct: 238 NSEVISSSLAILFGNEARGLPKEVLQQVDDISIIPIYGKAESMNLATSAAVML 290 >gi|94985187|ref|YP_604551.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM 11300] gi|94555468|gb|ABF45382.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM 11300] Length = 263 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 96/234 (41%), Gaps = 5/234 (2%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + + G ++ A+ L + P P + + +K+ G Sbjct: 30 GVILVEGARELARAVAAGLLP-TTLYTCAALYSPEAQAVVATLPGPRVPLAREAFEKVSG 88 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 +E L P +P L V + +++VL + P NIGAILR+A A G++ Sbjct: 89 RENP--DGLLALVPTPAPRLPEVGEAGVVVVLHGLEKPGNIGAILRTADAAGAAGVLVLG 146 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R + S + +++ G++ +P + AL + + + D+ + Sbjct: 147 RGADVYSPNVIRASQGSVFTLPVANLEEA-AALAWLAEHRLTRVACTPDAPQVYWDAPLT 205 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++AL+LGAE +GL P + A + M G +LNV+ AAA+ LY Sbjct: 206 GRVALVLGAEHEGLPPAWRA-AEMPVRVPMHGTADSLNVATAAALVLYECVRQR 258 >gi|260435563|ref|ZP_05789533.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8109] gi|260413437|gb|EEX06733.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8109] Length = 250 Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 78/242 (32%), Gaps = 17/242 (7%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 L G H + L + +++AT+ L A L + V + + + Sbjct: 2 LLEGTHLLQEVLRQGNAP-EEIIATEAWLQGHSAMAELCSQARWRIVTDEVLRAALTTVT 60 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 + L L+VLD + DP N+G +LR+A+A + + Sbjct: 61 P---DGVACLSPLDRLPTVPPELDFLLVLDRIQDPGNLGTLLRTALAADVNAVWMGAGVD 117 Query: 170 PS-------------ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 P + S A+ ++ + +D Sbjct: 118 PLGTKVLRASAGALLQLPHQRFGPSEAMAISQLLQELKQLVSFGVQVVATLVPDATKADP 177 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P AL+LG EG GL P Q T L +++LNV++AA L Sbjct: 178 PSPYWDLDWTLPTALVLGTEGAGLHPDLQACCTHAVTLPHSARVESLNVASAAVPLLLER 237 Query: 277 QN 278 + Sbjct: 238 RR 239 >gi|6324775|ref|NP_014844.1| Mrm1p [Saccharomyces cerevisiae S288c] gi|1346886|sp|P25270|MRM1_YEAST RecName: Full=rRNA methyltransferase, mitochondrial; AltName: Full=21S rRNA [GM2251] 2'O-methyltransferase; AltName: Full=Mitochondrial large ribosomal RNA ribose methylase; Flags: Precursor gi|431760|gb|AAA74564.1| ribosomal RNA methylase [Saccharomyces cerevisiae] gi|1420475|emb|CAA99414.1| PET56 [Saccharomyces cerevisiae] gi|285815081|tpg|DAA10974.1| TPA: Mrm1p [Saccharomyces cerevisiae S288c] Length = 412 Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 60/329 (18%), Positives = 101/329 (30%), Gaps = 74/329 (22%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF-------------LYGVHTVSAAL 61 K +H KL+ + K NQKS + +YG ++V AAL Sbjct: 81 KKKAHVEKLK----EIKNQAKLNQKSHKSKFQNKDIALKLMNDNPIFEYVYGTNSVYAAL 136 Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH---------- 111 NPSR L + + V ++ + + Sbjct: 137 LNPSRNCHSRLLYHGTIPSKFLQIVDELKVTTELVDKHRLNLLTNYGVHNNIALETKPLQ 196 Query: 112 -----------------------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 L T + L + LD + DPHNIG Sbjct: 197 PVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGLYLDEITDPHNIG 256 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--------------LEHIPYIRISN 194 AI+RSA D I+ ++R + V++K++SGA Sbjct: 257 AIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPLEFFTKSQEMGGW 316 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 ++ + + S L + L++G E +G+R + + + Sbjct: 317 TFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRTNLKMRSDFFVEI 376 Query: 255 HMPG----------IIKALNVSNAAAVAL 273 G I+ +LNVS A A+ + Sbjct: 377 PFGGIEKGNRAPEPIVDSLNVSVATALLI 405 >gi|323302933|gb|EGA56737.1| Mrm1p [Saccharomyces cerevisiae FostersB] Length = 412 Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 60/329 (18%), Positives = 101/329 (30%), Gaps = 74/329 (22%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF-------------LYGVHTVSAAL 61 K +H KL+ + K NQKS + +YG ++V AAL Sbjct: 81 KKKAHVEKLK----EIKNQAKLNQKSHKSKFQNKDIALKLMNDNPIFEYVYGTNSVYAAL 136 Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH---------- 111 NPSR L + + V ++ + + Sbjct: 137 LNPSRNCHSRLLYHGTIPSKILQTVDELKVTTELVDKHRLNLLTNYGVHNNIALETKPLQ 196 Query: 112 -----------------------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 L T + L + LD + DPHNIG Sbjct: 197 PVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGLYLDEITDPHNIG 256 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--------------LEHIPYIRISN 194 AI+RSA D I+ ++R + V++K++SGA Sbjct: 257 AIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPLEFFTKSQEMGGW 316 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 ++ + + S L + L++G E +G+R + + + Sbjct: 317 TFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRTNLKMRSDFFVEI 376 Query: 255 HMPG----------IIKALNVSNAAAVAL 273 G I+ +LNVS A A+ + Sbjct: 377 PFGGIEKGNRAPEPIVDSLNVSVATALLI 405 >gi|320353876|ref|YP_004195215.1| tRNA/rRNA methyltransferase SpoU [Desulfobulbus propionicus DSM 2032] gi|320122378|gb|ADW17924.1| tRNA/rRNA methyltransferase (SpoU) [Desulfobulbus propionicus DSM 2032] Length = 157 Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 4/157 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + +S L +VL P N G+I R A + + L ++ H+ Sbjct: 3 PMDSSALHIVLVEPEIPPNTGSIARLCGATDTVLDLVHPLGFQIDDKHLKRAGLDYWPHV 62 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE- 246 +L LQ+ + + + D+ LI G E KGL + Sbjct: 63 RINHWDSLDAFLQQADERHLHFLTTKTKRSYTEARFCPGDR--LIFGKETKGLPEEILTL 120 Query: 247 TATSMAHLHM-PGIIKALNVSNAAAVALYITQNHFAK 282 + + M I++LN++ AA + LY + Sbjct: 121 YSDRCLTIPMTNPHIRSLNLAMAAGIVLYEALRQIRR 157 >gi|172041241|ref|YP_001800955.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] gi|171852545|emb|CAQ05521.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] Length = 286 Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 52/270 (19%), Positives = 103/270 (38%), Gaps = 23/270 (8%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DA 85 D++ + S + + + + G V L++ + ++ + L+ L A Sbjct: 18 DFRDLNSSDSRPDLPGGKGLVIVEGSLVVPRLLSSGY-PVRSVVGFEGKLSVLQDVTCSA 76 Query: 86 NLPHPFPV-KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLD 139 P PV V + + ++ G + +H+GL + T+ D ++ +L+ Sbjct: 77 AQPAGGPVVYQVSREVLREVAGFD-MHRGLVAAADRIPERTVPEVLADIPAGPSVIAILE 135 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V D NIGA+ R+A D ++ + + + G + +P+ R S T Sbjct: 136 GVGDHENIGALFRNAAGLGVDAVLFGAATADPLYRRAVRVSMGHVLRVPWARFSGKTTNW 195 Query: 200 QKMHSWGFQTIGLSSDSKKP------------LEQEIKNDKIALILGAEGKGLRPKTQET 247 Q + ++ + +IA+++GAEG GL Sbjct: 196 QHGLDAVREAGFQIIAMTPDTELSLADAVLAVRREQGEGARIAIMVGAEGPGLTEHAMRA 255 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A A + M +LNV+ AAA+ Y ++ Sbjct: 256 ADMRAKIPMMPGTDSLNVATAAAIGFYASR 285 >gi|158425126|ref|YP_001526418.1| tRNA/rRNA methyltransferase [Azorhizobium caulinodans ORS 571] gi|158332015|dbj|BAF89500.1| tRNA/rRNA methyltransferase [Azorhizobium caulinodans ORS 571] Length = 156 Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 53/148 (35%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++ L + N G LR+ I P + ++ L+ + + R + Sbjct: 1 MILALYCPDIAQNTGTCLRTGACLGVPVHIIEPAGFPVSAPAFRRAGMDYLDAVEWQRHA 60 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + G + + ++ PL L+ G E G + A + Sbjct: 61 SFAAFERWRREEGRRLVLFTTKGATPLPAFTFQPGDVLLFGRESAGAPEEVHAAADARVK 120 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281 + + +++LNV+ +AA+AL Sbjct: 121 IPLRPGMRSLNVAVSAAMALGEALRQTN 148 >gi|294463916|gb|ADE77479.1| unknown [Picea sitchensis] Length = 327 Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 51/150 (34%), Gaps = 1/150 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEH 186 R + +V++ + D NI A++R+A A + T + S Sbjct: 126 MNRTYSICLVVEGLTDFGNISAVIRTADALGFQSVHVITNDSTKRYKKSRNVSMGSEKWL 185 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + + + + A++LG E +G+ + + Sbjct: 186 DIEQWDNTWECFEVLRSRGYRIAVTHVGNDTVSVHDMDWTLPTAIVLGNEHRGISGEALK 245 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + M G++ + NVS AA + ++ Sbjct: 246 FSDIKCSIPMTGMVDSFNVSVAAGIFMHAA 275 >gi|34393586|dbj|BAC83213.1| putative rRNA methylase [Oryza sativa Japonica Group] gi|215686941|dbj|BAG90774.1| unnamed protein product [Oryza sativa Japonica Group] Length = 343 Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 18/184 (9%), Positives = 51/184 (27%), Gaps = 6/184 (3%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V+ + ++ + + + ++ S L+V + + A Sbjct: 113 VELTSREVLEVL------EPHIMEARRERIRRAVENRSYSVCLVVEGLSDFGNVSAAFRS 166 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 + + + + S + S Sbjct: 167 ADALGVQSVHVISCDNNKRYRDNRHVSMGAEKWLDIELWSSTAECFDALKKRGYRIATTY 226 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + + A+++G E G+ + + + M G++ + NVS AA + Sbjct: 227 LGNDSVCVYDMDWSQPTAIVVGNELMGISDDALKLSDLHCSVPMKGMVDSFNVSVAAGIL 286 Query: 273 LYIT 276 ++ Sbjct: 287 MHHA 290 >gi|291519714|emb|CBK74935.1| rRNA methylases [Butyrivibrio fibrisolvens 16/4] Length = 272 Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 95/240 (39%), Gaps = 5/240 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQ 99 + ALN ++ + L+ K + + +L V Sbjct: 29 FEPNGGVFIAETPEVIKRALNRGAKALAFLVEAKAYDTDVVRELLVDLDDDTTVFVAALN 88 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 I+ I G LA P L + + N++ + +L+ V +P N+GAI RSA A Sbjct: 89 VINNITGFNLTRGVLAACRRPALPDPKELLANTKRIAILEDVMNPTNVGAIFRSAAALGV 148 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 + + T + A+ + G + +P+ +D + +H GF+ + ++ Sbjct: 149 EAVFLTHPSADPFYRRAARVSMGTVFQVPWTYFYKDSDYIGALHQAGFKVVSMALKENAI 208 Query: 220 L---EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + DK+A++ G E G++ T + + + M + +LNV+ A+AV + Sbjct: 209 PLSAPELKNQDKLAIVFGTESTGIKDDTISKSDYVTIIPMYNEVDSLNVAAASAVTFWEL 268 >gi|332828668|gb|EGK01360.1| hypothetical protein HMPREF9455_02193 [Dysgonomonas gadei ATCC BAA-286] Length = 175 Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 3/159 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + L+++LD+V +NIG++ R++ AF + + + +A + K+A GA Sbjct: 16 EFKDAEKTPLVVILDNVRSLNNIGSVFRTSDAFLIESVYLCGITACPPNAEIHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLR 241 + ++ + DAL+ + GF + + + K A++LG E KG+R Sbjct: 76 NSVDWVYYEDTRDALRGLKDRGFTICAIEQAERSIMLDELVVDKAKGYAVVLGNEVKGVR 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + G +LNVS AA + ++ Sbjct: 136 QEVVDLCDCCIEIPQYGTKHSLNVSVAAGIVIWEFFKQL 174 >gi|103486832|ref|YP_616393.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256] gi|98976909|gb|ABF53060.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256] Length = 152 Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 50/144 (34%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + N+G ILR+A F I P A L ++ R ++ Sbjct: 3 IALFQPDIAGNVGTILRTASCFGVPAHIIEPCGFPFGDAALRRAGMDYAARADVRRHADW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 HS + + L++ L L+ G+E G+ P A + Sbjct: 63 DGFSGWSHSTAGRLVLLTTAGATRLPDFAFAHGDILLFGSESAGVPPHVHAAAAERVAIP 122 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 M + LNV+ AA +AL Sbjct: 123 MQPGFRCLNVAVAAGIALAEALRQ 146 >gi|218199964|gb|EEC82391.1| hypothetical protein OsI_26737 [Oryza sativa Indica Group] Length = 343 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 18/184 (9%), Positives = 51/184 (27%), Gaps = 6/184 (3%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V+ + ++ + + + ++ S L+V + + A Sbjct: 113 VELTSREVLEVL------EPHIMEARRERIRRAVENRSYSVCLVVEGLSDFGNVSAAFRS 166 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 + + + + S + S Sbjct: 167 ADALGVQSVHVISCDNNKRYRDNRHVSMGAEKWLDIELWSSTAECFDALKKRGYRIATTY 226 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + + A+++G E G+ + + + M G++ + NVS AA + Sbjct: 227 LGNDSVCVYDMDWSQPTAIVVGNELMGISDDALKLSDLHCSVPMKGMVDSFNVSVAAGIL 286 Query: 273 LYIT 276 ++ Sbjct: 287 MHHA 290 >gi|157414470|ref|YP_001481726.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 81116] gi|157385434|gb|ABV51749.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 81116] gi|307747114|gb|ADN90384.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni M1] gi|315931966|gb|EFV10919.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp. jejuni 327] Length = 227 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG L I +L K + + F +K + +T + K Sbjct: 2 IVYGKQIFFYILEYHKDCINELYLAKECD-KTTFSKIAKSGFKIKKLDFKT-AQAYAKGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG L+ L+ ++ + +++L ++D NIGAI R+A A +I Sbjct: 60 NHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKL 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 E + +++SGA +P + ++ + ++ GF K+ +I N K Sbjct: 120 AME--GVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYASDGSGKEIHSVKISNGKK 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L+LG+EG GL K + + M +LNVS A A+ Sbjct: 178 VLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 221 >gi|91975781|ref|YP_568440.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris BisB5] gi|91682237|gb|ABE38539.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris BisB5] Length = 150 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 57/144 (39%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + P N G +LR + + I P+ ++ L+ + +R + Sbjct: 3 IALYQPDIPQNTGTLLRFCACLNLEAHIIEPAGFPTSDRHFRRAGMDYLDQVTILRHDSW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + +Q + I L++ P ++ L+LG E G+ + A + + Sbjct: 63 SKFVQWRKEADCRVILLTTKGVTPYLEQRYQSTDVLLLGRESAGVPDEVAAAADARVLIP 122 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 M +++LNV+ AAA+ + Sbjct: 123 MQPKMRSLNVAMAAALVVGEALRQ 146 >gi|283955600|ref|ZP_06373093.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 1336] gi|283792825|gb|EFC31601.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 1336] Length = 227 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG L I +L K + + F +K + +T + K Sbjct: 2 IVYGKQIFFYILEYHKDCINKLYLAKECD-KATFSKIAKSGFKIKKLDFKT-AQAYAKGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG L+ L+ ++ + +++L ++D NIGAI R+A A +I Sbjct: 60 NHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKL 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 E + +++SGA +P + ++ + ++ GF K+ +I N K Sbjct: 120 AME--GVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYASDGSGKEIHSVKISNGKK 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L+LG+EG GL K + + M +LNVS A A+ Sbjct: 178 VLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 221 >gi|148265317|ref|YP_001232023.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter uraniireducens Rf4] gi|146398817|gb|ABQ27450.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter uraniireducens Rf4] Length = 160 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 K G + I S + + ++ G E KGL + Sbjct: 56 YWSEVDIHYWEDLDALKSAYPGGRFIYTSKKVPRSYVEMEFTAGDFIVFGKETKGLPDEL 115 Query: 245 QETA-TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E + + + G +++LN+S AA + LY Sbjct: 116 IEANPDTAVRIPIFGRVRSLNLSTAAGIVLYEALRQ 151 >gi|315648965|ref|ZP_07902059.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus vortex V453] gi|315275646|gb|EFU39000.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus vortex V453] Length = 154 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 50/151 (33%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + ++ L ++ + Sbjct: 1 MALHIVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 + + + + + D L+ G E KGL P+ + Sbjct: 61 HDSFEELKALYPDGRYFYATTKATKRYMD--IEYQDGDFLVFGKETKGLPPELLAANSEH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M +++LN+SN+AA+ +Y Sbjct: 119 CIRMPMTDKVRSLNLSNSAAIMVYEALRQLN 149 >gi|238925347|ref|YP_002938864.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium rectale ATCC 33656] gi|238877023|gb|ACR76730.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium rectale ATCC 33656] gi|291524331|emb|CBK89918.1| Predicted rRNA methylase (SpoU class) [Eubacterium rectale DSM 17629] gi|291527619|emb|CBK93205.1| Predicted rRNA methylase (SpoU class) [Eubacterium rectale M104/1] Length = 167 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 1/99 (1%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G + + + G + ++ + ++ G E G+ Sbjct: 50 GMDYWKDLDVTTYVDWEDFLERNPGAKIYYATTKGRHVYSDAHFEPDCYIMFGKESAGIP 109 Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + E + M G ++LN+SN+ A+ LY Sbjct: 110 EEILKEHPDECIRIPMIGETRSLNLSNSVAIVLYEALRQ 148 >gi|111021435|ref|YP_704407.1| tRNA (guanosine-2 [Rhodococcus jostii RHA1] gi|110820965|gb|ABG96249.1| tRNA (guanosine-2 [Rhodococcus jostii RHA1] Length = 248 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 63/238 (26%), Positives = 114/238 (47%), Gaps = 11/238 (4%) Query: 53 GVHTVSAALNNP--SRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 G + V L + ++ + T+ + + + VP +D++ Sbjct: 10 GRNPVVECLRAGVPATALYVAVGTESDDRLKESVQRAADAGISILEVPRSDLDRLSA-NG 68 Query: 110 VHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +HQG+AL+ P D + + LL+ LD++ DP N+GA++RS AF G+ Sbjct: 69 MHQGIALQVPPYRYAHPDDLIAEARKHQEAPLLVALDNITDPRNLGAVVRSVAAFGGHGV 128 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + +R S S +AV ++++GA +P R +NLT L+ S G Q +GL + L++ Sbjct: 129 VIPERRSASVTAVAWRTSAGAAARLPIARATNLTRTLKDWASKGVQVVGLDAGGDTTLDE 188 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + +++G+EGKGL +E ++ + M G +++LN S AA V L Sbjct: 189 FDGSGPVVVVVGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVAAGVVLADIARRR 246 >gi|261819493|ref|YP_003257599.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium wasabiae WPP163] gi|261603506|gb|ACX85992.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium wasabiae WPP163] Length = 154 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 42/149 (28%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R A C + E L ++ + R Sbjct: 1 MFHIALYEPQIAPNTGNIIRLAANNGCTLHLIEPLGFDFEEKKLRRAGLDYHDLAKVSRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 N D L + L+ G+E GL + + Sbjct: 61 KNYQDFLAAIPGQRIFACTTKGSRPYDQPT--YQPGDVLLFGSETSGLPDAIRNGFESDF 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ Y Sbjct: 119 RIRIPMQSDSRSLNLSNAVAIISYEAWRQ 147 >gi|170688538|ref|ZP_02879745.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0465] gi|254684375|ref|ZP_05148235.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. CNEVA-9066] gi|170667563|gb|EDT18319.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0465] Length = 162 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R+ A + + ++ +L ++ +H+ Sbjct: 1 MGVHVVLYQPEIPANTGNIARTCAATGIELHLIRPLGFSTDDKMLKRAGLDYWQHVKITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQE-TAT 249 ++ + +K F + + K +K + G E GL E Sbjct: 61 YDSIEEFYEKNKDGEFFYLTKYGEKAHTAFDYSKREKDYYFVFGRETNGLPANVIEENFD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M +++LN+SN AA+ +Y Sbjct: 121 HCLRIPMTDKVRSLNLSNTAAILIYEAFRQQN 152 >gi|126664480|ref|ZP_01735464.1| 23S rRNA methyltransferase [Marinobacter sp. ELB17] gi|126630806|gb|EBA01420.1| 23S rRNA methyltransferase [Marinobacter sp. ELB17] Length = 262 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 87/267 (32%), Gaps = 30/267 (11%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSA---------ALNNPSRKIFQLLATK------- 75 ++ QK ++ + + G H V AL + + Sbjct: 5 DIKKLQQK-KYREAFGHYLVEGEHLVLELQKAASTQPALKSSELYVTAAYEHWQSPFTTH 63 Query: 76 ---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132 D P + VP + + V + P ++ + Sbjct: 64 LIGERQMARLADTQTPQGI-LAIVPIKV---PIIAPEVTPIVTPMAQSQERPAINTQHSP 119 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L V DP N+G ILR+ F + + + + +++ GA+ H+P Sbjct: 120 AKAIYLHEVQDPGNLGTILRTLAWFGGFRCLLSPGSVDPYNPKVVRASMGAIFHLPLETD 179 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 L ++ H + S ++ D + G E +G+ + + + A Sbjct: 180 VELASLSERFHRLACLDLNGRSLTEPG-----FADHDCYLFGNEARGIPAQALDELNATA 234 Query: 253 -HLHMPGIIKALNVSNAAAVALYITQN 278 ++ G I++LN+++A + + Sbjct: 235 YTINGKGQIESLNLASAVNICSWELMR 261 >gi|307721830|ref|YP_003892970.1| RNA methyltransferase, TrmH family, group 3 [Sulfurimonas autotrophica DSM 16294] gi|306979923|gb|ADN09958.1| RNA methyltransferase, TrmH family, group 3 [Sulfurimonas autotrophica DSM 16294] Length = 228 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 84/230 (36%), Gaps = 8/230 (3%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +Y + +NN +KI L K L + ++ + F +K +P + + K A Sbjct: 2 LIYAKQPIYYLINNYPQKIKTLYLAKE-LDKKEYSRLMKMGFEIKRIPNEA-AVKMSKNA 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG E N ++VL + D NIGAI+RSA A D II + Sbjct: 60 NHQGFLAEVEDYKLHDYQTFLNKDFVVVLAGLTDVGNIGAIVRSAYALGVDAIIVSG--I 117 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + S + + N L + + + K Sbjct: 118 KHLNIEPLLRTSTGALFDMPLAVENNIHNLLNDFKMSGFISYGADMGGVDIREAKIVKKR 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL----YI 275 L+LG EG+GL + ++ + M +LNVS A A+ + Y Sbjct: 178 VLVLGNEGEGLTSRVSSKLDNIVSIKMAHDFDSLNVSVAGAILMDRMRYE 227 >gi|294777466|ref|ZP_06742917.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510] gi|294448534|gb|EFG17083.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510] Length = 178 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 3/161 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L +VLD V HNIG++ R++ AF D I + + K+A GA Sbjct: 16 EFKKADKLPLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 + + N DA+Q++H GF + + + + K A+++G E KG++ Sbjct: 76 NSVEWRYKKNTLDAVQELHDQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + G +LNVS + L+ N K Sbjct: 136 QEVVNACDGCVEIPQYGTKHSLNVSVTTGIILWEFANKLMK 176 >gi|228989669|ref|ZP_04149651.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442] gi|228995858|ref|ZP_04155516.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17] gi|229003475|ref|ZP_04161293.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4] gi|228757713|gb|EEM06940.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4] gi|228763830|gb|EEM12719.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17] gi|228770003|gb|EEM18585.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442] Length = 162 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R+ A + + ++ +L ++ +H+ Sbjct: 1 MGVHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQE-TAT 249 ++ + +K F + + K +K + G E GL E Sbjct: 61 YDSIEEFYEKNKDGEFFYLTKYGEKAHTAFDYSKVEKDYYFVFGRETNGLPANVIEENFD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M +++LN+SN AA+ +Y Sbjct: 121 HCLRIPMTDKVRSLNLSNTAAILIYEAFRQQN 152 >gi|215432552|ref|ZP_03430471.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis EAS054] Length = 197 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 85/176 (48%) Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + A+ P + LL+ LD+++DP N+GAI+RS AF G Sbjct: 4 NHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 63 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S S +AV ++++GA IP R +NLT L+ G + IGL + L+ Sbjct: 64 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 123 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D + +++G+EGKGL ++ + + M ++LN S AA V L Sbjct: 124 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIA 179 >gi|77024987|gb|ABA61413.1| rRNA methylase [uncultured marine group II euryarchaeote HF70_39H11] Length = 232 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 70/229 (30%), Gaps = 4/229 (1%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+ + A+L+ L + RL + + D E Sbjct: 5 GIDAIEASLDAGEDITLVLALKECDDPRLIALLDRCMDAGIDVSFGSENDLWRMAETSPA 64 Query: 113 GLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 +D + L+ +L V N+G +R A G+I T ++ Sbjct: 65 LALALVGREPVADIDTMLERGGLIWMLAGVQYQTNVGFCIRVAEVSGASGLIVTGEWTSD 124 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + + A+ ++ + D L + SW + + + + + L Sbjct: 125 D---RHRIIRAAMRTNRFMPVVFGCDELAALKSWKGRVLAIEDVGTEEPWDADLTGDVIL 181 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I+G E G+ + E A + M G + N+ AV Sbjct: 182 IIGGENAGVSKELLEAADQTIRIPMAGFTPSYNLQAPMAVVAVEALRQR 230 >gi|332296699|ref|YP_004438621.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM 12168] gi|332179802|gb|AEE15490.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM 12168] Length = 250 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 34/247 (13%), Positives = 68/247 (27%), Gaps = 13/247 (5%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI 101 Q + L + G V A +I +L T A+ P V + Sbjct: 4 KQYQELAVCGFAAVKALEKEHPERIRRLYFTAERAAQFGDLCRFLSQEKIPYNKVETLDL 63 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +K+ G HQG+ A L + + + +G Sbjct: 64 EKLCG-SVHHQGVVAMIAQPEIEPLTVEITADWVRGGESAVLLDRVGNANNLGAIVRSAA 122 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 + + + + +++ G + Sbjct: 123 FFGIRNIVIPLDEAQSSVTTSSYRVAQGGMEYVRVYSVRSAVRLLQDMSGKMVRFGTDVR 182 Query: 222 QEIKNDKIA---------LILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAV 271 +A ++LG E G+ P +E + + +++LNV+ AA++ Sbjct: 183 GAAPVSNMARLRAGKAALVVLGNEEAGISPLIRENCDHLIIIPAVNAAVESLNVAQAASI 242 Query: 272 ALYITQN 278 LY Sbjct: 243 ILYELAK 249 >gi|294013040|ref|YP_003546500.1| RNA methyltransferase CspR [Sphingobium japonicum UT26S] gi|292676370|dbj|BAI97888.1| RNA methyltransferase CspR [Sphingobium japonicum UT26S] Length = 156 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 55/144 (38%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L N+GAILR A FS I A L ++A R +N Sbjct: 7 IALYQPEIAGNVGAILRLAACFSVPVDIIMPTGFAFSDAKLKRAAMDYGASADVTRHANF 66 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + G + + +SS + + L L++G+E G+ ++ A + Sbjct: 67 EAFDVRRRAEGRRLMLMSSHASQRLPDVEFRADDILLMGSESAGVPNAVRDLADVRVRIP 126 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 M ++LN++ + +A+ Sbjct: 127 MAPGFRSLNIAVSTGIAVAEALRQ 150 >gi|302804009|ref|XP_002983757.1| hypothetical protein SELMODRAFT_119049 [Selaginella moellendorffii] gi|300148594|gb|EFJ15253.1| hypothetical protein SELMODRAFT_119049 [Selaginella moellendorffii] Length = 264 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 1/157 (0%) Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + A R + V++ + D NI A+ R+A AF + + Sbjct: 59 QKFDQIIANRTFSICPVVEGLFDIGNICAVFRTAEAFGLQSVHVIANSDQKRYKEARNIS 118 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKG 239 GA + + N + +Q + S G++ P+ + A+I G E G Sbjct: 119 MGAEKWLDVEVWENTNECVQVLRSRGYRIAVTDMGADTVPIHELDWTIPTAVIFGNEHNG 178 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + A H+ M G++++ NVS AA + +Y Sbjct: 179 TSEEALALADVKCHIPMVGMVESFNVSVAAGILMYHI 215 >gi|33863022|ref|NP_894582.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313] gi|33634939|emb|CAE20925.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus str. MIT 9313] Length = 166 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 9/162 (5%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D + S L + L P N G I R+ AF + + L ++ H Sbjct: 3 DPNKRSPLRVALYEPRIPPNTGNIARTCAAFRIPLALIEPLGFSLDDRYLRRAGLDYWPH 62 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + S+L + + L+ G E GL K ++ Sbjct: 63 VDLSVHSDLDTFRKCLPLNHRLIGCSRFGGIPLRSM-RFQTGDVLLFGREDTGLPSKVRQ 121 Query: 247 TATSMAHLHMP--------GIIKALNVSNAAAVALYITQNHF 280 + + MP G +++LN+S A A+ + Sbjct: 122 QCDQITTIPMPGAASEQGQGGVRSLNLSVACAIVSFEAGRQL 163 >gi|146296318|ref|YP_001180089.1| RNA methyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409894|gb|ABP66898.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 154 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 50/150 (33%), Gaps = 3/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P+N G I R+ + E L ++ +++ Sbjct: 1 MPINIVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKI 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250 +L D +K K+ Q D L+ G E GL E Sbjct: 61 YKDLNDFFEKNRDANVFYFSTKG--KQYYTQAPYTDNCYLMFGKETAGLPQWLIEQNIHK 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++LN+SNA A+ LY Sbjct: 119 TYRIPMISDVRSLNLSNAVAIVLYEALRQL 148 >gi|119477702|ref|ZP_01617852.1| tRNA (guanosine-2'-O-)-methyltransferase [marine gamma proteobacterium HTCC2143] gi|119449205|gb|EAW30445.1| tRNA (guanosine-2'-O-)-methyltransferase [marine gamma proteobacterium HTCC2143] Length = 239 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L ++ D+V+ N+ AI+R+A A + + + Sbjct: 15 QRQPDLTVLTDYVHKGRNLSAIVRTADAVGIGSVHCVVGDKD-YRSFRGTALGSHRYVEV 73 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + S + + L++GAE GL E A Sbjct: 74 HRYTELNQPVTALKSRGFQVVAAHVSATAVDYHEVDYTAPTVLLMGAEKNGLSADGLEAA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++ NVS AA + L ++ Sbjct: 134 DIHITVPMVGMVESFNVSVAAGIILNEARHQR 165 >gi|225376769|ref|ZP_03753990.1| hypothetical protein ROSEINA2194_02411 [Roseburia inulinivorans DSM 16841] gi|225211395|gb|EEG93749.1| hypothetical protein ROSEINA2194_02411 [Roseburia inulinivorans DSM 16841] Length = 167 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 32/99 (32%), Gaps = 1/99 (1%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G + + + + ++ + ++ G E G+ Sbjct: 50 GMDYWKDLDVTTYVNWDDFCEKNPNEKIYMATTKGRHVYSDVSYEPDCFIMFGKESAGIP 109 Query: 242 PKTQETA-TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + + M G ++LN+SN+ A+ LY Sbjct: 110 EEILKANPDTCVRIPMIGETRSLNLSNSVAIVLYEALRQ 148 >gi|218885937|ref|YP_002435258.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756891|gb|ACL07790.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 152 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 1/143 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VL H P N G + R A + + L ++ H+ Sbjct: 1 MHIVLYHPEIPPNTGNVARLCAATRTQLHLIEPLGFSLDDRYLKRAGLDYWPHVNLSVWP 60 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + A + + S+ + + + ++ AL+ G E GL + + Sbjct: 61 DW-QAYLDGPGSERRLVMTSARAGAAVHRFDFTERDALVFGPETTGLPAEVLDATPHHVR 119 Query: 254 LHMPGIIKALNVSNAAAVALYIT 276 + + G +++LN+S A + LY Sbjct: 120 IPIWGEVRSLNLSTATGIVLYQA 142 >gi|322505559|emb|CAM43084.2| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 2037 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 2/175 (1%) Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 ++ V E L P + +++V + +P NI + R F+ I+ Sbjct: 1853 QKKVSSWWTSEVYNELHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAVQSIVVPD 1912 Query: 167 RYSPSESAVLA--KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + +A +SA + + + + +E Sbjct: 1913 KRVFEHPHFVAAARSAELWIPWEEVMPKDLPCYLEGLRRRGYMVVGIEQTAASVSMEHFS 1972 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + A++LGAEG+G+ + G+I++LNV A AV +Y Sbjct: 1973 FPKRCAVVLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAVIMYEYTRQ 2027 >gi|154343391|ref|XP_001567641.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 2037 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 2/175 (1%) Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 ++ V E L P + +++V + +P NI + R F+ I+ Sbjct: 1853 QKKVSSWWTSEVYNELHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAVQSIVVPD 1912 Query: 167 RYSPSESAVLA--KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + +A +SA + + + + +E Sbjct: 1913 KRVFEHPHFVAAARSAELWIPWEEVMPKDLPCYLEGLRRRGYMVVGIEQTAASVSMEHFS 1972 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + A++LGAEG+G+ + G+I++LNV A AV +Y Sbjct: 1973 FPKRCAVVLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAVIMYEYTRQ 2027 >gi|33862541|ref|NP_894101.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9313] gi|33640654|emb|CAE20443.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9313] Length = 245 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 56/152 (36%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R + L ++L+HV PHN+ AILRS A + S + Sbjct: 33 CRMADLTVLLEHVEKPHNLSAILRSCDAVGVLEAHAVNYSGRLPTFNSTAQGSQKWIPLK 92 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + K + L +++ + + + A +LGAE GL Sbjct: 93 EHSSIEVAVKAIKDSGFRLYGTHLGGNARDYRDCD-FCEPTAFVLGAEKWGLSKLATPLM 151 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS AAA L+ Sbjct: 152 DEGIFIPMSGMVQSLNVSVAAATLLFEALRQR 183 >gi|302848864|ref|XP_002955963.1| hypothetical protein VOLCADRAFT_109989 [Volvox carteri f. nagariensis] gi|300258689|gb|EFJ42923.1| hypothetical protein VOLCADRAFT_109989 [Volvox carteri f. nagariensis] Length = 312 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 57/155 (36%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R +L +++ + D N+ A+ R+A A + R +A Sbjct: 86 QNRTFSVLPIVEGLYDMGNLAAVCRTADALGYGAVHCINRGDVKYKVSQRTAAGADKWLD 145 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + S + S S +E+ A ILG E G+ + Sbjct: 146 VKMWDSTAECLAAVRSAGYQIITTHLSQSAITIEEVDWTRPTAFILGNEKFGVSEEAVAA 205 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A + A + M G++++ N+S A+A+ +Y + + Sbjct: 206 ADACAIIPMTGMVESFNISVASALIMYEARQQRLR 240 >gi|260223702|emb|CAX28485.1| tRNA (Guanosine-2'-O-)-methyltransferase [Candidatus Phlomobacter fragariae] Length = 218 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 3/152 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R+ L + L++++ P NI AI+R+A I S + +A Sbjct: 15 MRHPDLTVCLENLHKPRNISAIIRTADEVEIPQI-HAIWSKNSSKNLSTAAAGSNHWVRV 73 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + + ++ + +ILG E G+ + A Sbjct: 74 KNHATIENTISTCKAAGMQILVTHLTNQAIDFLEIDYTQPNCIILGQEQTGISKQALALA 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ M G++++LNVS A+A+ LY Q Sbjct: 134 DH--NIPMMGMVQSLNVSVASALILYEAQRQR 163 >gi|153951021|ref|YP_001397411.1| RNA methyltransferase [Campylobacter jejuni subsp. doylei 269.97] gi|152938467|gb|ABS43208.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. doylei 269.97] Length = 227 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG L I +L K + + F +K + +T + K Sbjct: 2 IVYGKQIFFYILEYHKDCINELYLAKECD-KATFSKIAKSGFKIKKLDFKT-AQAYAKGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG L+ L+ ++ + +++L ++D NIGAI R+A A +I Sbjct: 60 NHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKL 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 E + +++SGA +P + ++ + ++ GF K+ +I N K Sbjct: 120 AME--GVIRASSGAALDLPIVISNDALSVINELKQVGFYFYASDGSGKEIHSVKINNGKK 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L+LG+EG GL K + + M +LNVS A A+ Sbjct: 178 VLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 221 >gi|170766721|ref|ZP_02901174.1| RNA methyltransferase, TrmH family, group 2 [Escherichia albertii TW07627] gi|170124159|gb|EDS93090.1| RNA methyltransferase, TrmH family, group 2 [Escherichia albertii TW07627] Length = 157 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTTVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + L++ D L+ G E +GL + A Sbjct: 59 RHHDYSAFLEAENPQRLFALTTKGTPAHSAVSYQDSDYLMFGPETRGLPATILDALPADQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|146329702|ref|YP_001209617.1| rRNA methyltransferase [Dichelobacter nodosus VCS1703A] gi|146233172|gb|ABQ14150.1| rRNA methyltransferase [Dichelobacter nodosus VCS1703A] Length = 159 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 3/148 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + + L H P N G I+R I + L ++ E I Sbjct: 1 MHVALFHPQIPPNTGNIIRLCANTGVKLHIIHPTGFVWDDKRLRRAGLDYAE-FAEITHH 59 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251 + L++ K+ + + L+ G+E GL + Sbjct: 60 ENWSDFARYFPKESCIWALTTRGKRCVYDAAFSPNDVLLFGSETSGLTEEVHAEIAPEHK 119 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN+ A+ LY Sbjct: 120 LRLPMQACSRSLNLSNSVAIVLYEALRQ 147 >gi|298571681|gb|ADI87833.1| hypothetical protein AKSOIL_0325 [uncultured bacterium Ak20-3] Length = 250 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 97/231 (41%), Gaps = 4/231 (1%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP--PQTIDK 103 + G+ ++ + + I ++ +T ++ PVK V P + ++ Sbjct: 8 SNEFTVEGMSALAEFVRHKPSSIKRIFSTPKYKDKVTALVGKL-DIPVKIVEDRPSSDER 66 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + ++ L L + QL++ LDH+ DP N+GAI RSA F I+ Sbjct: 67 PTSPVYASVEIHYQSFSNLLSILGKSKQDQLVLALDHITDPRNLGAIARSAAFFGVKYIL 126 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 K + ++ GA + + NL AL+K+ GF I + +K + Sbjct: 127 IPKMRQVLLTPASVATSQGAFAFSELVLVPNLGQALEKLKEEGFWVICADAKGEKFEKVI 186 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII-KALNVSNAAAVAL 273 + K+ L+LG+E KG+ ++ + + + +LNVS AA + L Sbjct: 187 GEYQKVVLLLGSEDKGVSELLKKRSDRVVSISTDTQTLDSLNVSVAAGILL 237 >gi|284034068|ref|YP_003383999.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836] gi|283813361|gb|ADB35200.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836] Length = 279 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 88/277 (31%), Gaps = 27/277 (9%) Query: 22 KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81 ++ + ++ Q+ + + GV +S A+ + + + L++ Sbjct: 4 RVSSRNARFQVWQALLSNRNKRQRAGEFLVQGVRPISLAVEHGWTVNTLIHDAERPLSQW 63 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 D + + + + ++ + LA+ P L +V D Sbjct: 64 ARDLLQNQQSTERVLMAPGLLAELTEKDEAEILAVVAMPPDDLERIEAGPDFLGVVFDRP 123 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-----HIPYIRISNLT 196 P NIG+I+RSA AF DG+I T + ++++G+L +P R Sbjct: 124 TGPGNIGSIIRSADAFGADGLIVTGHAADVYDPKAVRASTGSLFALPAVRVPSQREVMEW 183 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 A ++ +G + L++G E GL +E A + + M Sbjct: 184 VAARRAAGVPIVVVGTDEHGAVDVYDFDFTQPTLLLVGNETTGLSAAWKELADELVRIPM 243 Query: 257 PGI-----------IKALNVSNAAAVALYITQNHFAK 282 G LY + Sbjct: 244 TGAASSLNAANAATA-----------VLYEASRQRGQ 269 >gi|291535630|emb|CBL08742.1| Predicted rRNA methylase (SpoU class) [Roseburia intestinalis M50/1] gi|291540875|emb|CBL13986.1| Predicted rRNA methylase (SpoU class) [Roseburia intestinalis XB6B4] Length = 167 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 1/99 (1%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G + + + G + ++ + + ++ G E G+ Sbjct: 50 GMDYWSELDVTTYVNWDDFCEKNPGAKIYMATTKGRHVYTEVSYEPDCYIMFGKESAGIP 109 Query: 242 PKTQETA-TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + + M G ++LN+SN+ A+ LY Sbjct: 110 EEILKANPDTCVRIPMIGETRSLNLSNSVAIVLYEALRQ 148 >gi|237749573|ref|ZP_04580053.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229380935|gb|EEO31026.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 156 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 50/149 (33%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R + P + A + ++ E Sbjct: 1 MFHVVLVEPEIPPNTGNIIRLCANSGAQLHLIEPLGFPLDDAKMRRAGLDYHEFATMKVY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250 N D L+KM + ++ I G+E KGL P+ Sbjct: 61 KNWNDFLEKMTPDPSRMFAFTTRGSSIFSTLEFRPGDMFIFGSETKGLSPEIHAFFQDGH 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN+ A+A+Y Sbjct: 121 RVRLPMRPDNRSLNLSNSVAIAVYEAWRQ 149 >gi|153828346|ref|ZP_01981013.1| rRNA methylase, SpoU family [Vibrio cholerae 623-39] gi|148876176|gb|EDL74311.1| rRNA methylase, SpoU family [Vibrio cholerae 623-39] Length = 158 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 4/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193 + L N G I+R + + E + ++ + + + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251 + F+ ++ + + L+ G E +GL + + A Sbjct: 64 AAFIEYLQRERGSFRVFACTTKTTQHHVDAQFQPGDVLLFGPETRGLPAELIASLPAEQR 123 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 IRIPMMPEARSLNLSNAVAIIAFEAWRQ 151 >gi|118591955|ref|ZP_01549350.1| RNA methyltransferase [Stappia aggregata IAM 12614] gi|118435598|gb|EAV42244.1| RNA methyltransferase [Stappia aggregata IAM 12614] Length = 157 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 50/144 (34%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + P N G ILR A + P + L ++ LE +R + Sbjct: 4 IALYQPDIPQNTGTILRLAACMGVTVHLIEPAGFPISDSALKRAGMDYLERAAMVRHISF 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 S + + L++ S P L++G E G+ A + + Sbjct: 64 AAFDDWRRSERRRLVLLTTKSDLPYADFTFETDDILMMGRESSGVPEDVHALADARLTIP 123 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 M +++LNV+ + + L Sbjct: 124 MADGMRSLNVAVSTGMVLGEALRQ 147 >gi|308497766|ref|XP_003111070.1| hypothetical protein CRE_04820 [Caenorhabditis remanei] gi|308242950|gb|EFO86902.1| hypothetical protein CRE_04820 [Caenorhabditis remanei] Length = 698 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 47/267 (17%), Positives = 87/267 (32%), Gaps = 22/267 (8%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-----NA 77 R+ K ++ + K + + L+G+H V A+ + R + K + Sbjct: 18 FRKAKMAKKSVEKYKAKKIEIPEIKGEALFGLHAVLEAIRSGKRDFHSIYLKKAIEDSDT 77 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137 R +++ +D++ + +H G+ ++ + Sbjct: 78 RIREILQIIQELGIKKESLTDDQLDRLTEYQ-LHNGICMDA---SPLNFSNFETKNFSIF 133 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 +D V DP N+GAI RSA F DGI K P +S ++ Sbjct: 134 VDRVLDPGNLGAIGRSAWYFGADGICLVKGRGPKTITPSMIKSSCGALEHLPVQQFENFH 193 Query: 198 ALQKMHS--------WGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQETA 248 + + E K K ++LG EG G+ + Sbjct: 194 EFRDSIKLNSGELVATCDPLAAEKAGITVKSLNEWKPKKTVGIVLGDEGVGISKEILNFC 253 Query: 249 TSMAHL-HMPGI---IKALNVSNAAAV 271 ++ + + +LNVS AAV Sbjct: 254 DTVISIAPTREHQSSVTSLNVSVVAAV 280 >gi|218675158|ref|ZP_03524827.1| probable RNA methylase protein [Rhizobium etli GR56] Length = 274 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 93/256 (36%), Gaps = 9/256 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYG---VHTVSAALNNPS--RKIFQLLATKNALAR 80 + + + ++ T + G + ++ A R LL Sbjct: 12 DDPRVAEFRDIRER-DLTGRENRFIAEGTVVLRMLAEAHAQGRGFRAEKILLLRNRVEGI 70 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPTLDAVRNSQLLMVL 138 L P PV ++ IVG LA + LDA+ L++V Sbjct: 71 LPILERFPADVPVYVAEADALEGIVGFHLHRGVLALGRREERDEAALLDALPERALVLVG 130 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 +++ N G++ R+A AF D ++ + + + G++ +P+ R D Sbjct: 131 CGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYRKALRVSVGSVLSVPHRRGGKALDL 190 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L + GF LS K + ++AL++G EG+GL A + Sbjct: 191 LLALAERGFAIWTLSPHGKTDIRVIPAAARMALVVGTEGEGLPAALLARF-QSARIPQSD 249 Query: 259 IIKALNVSNAAAVALY 274 + +LN + A +AL+ Sbjct: 250 ELDSLNAATATGIALF 265 >gi|156093651|ref|XP_001612864.1| rRNA methylase [Plasmodium vivax SaI-1] gi|148801738|gb|EDL43137.1| rRNA methylase, putative [Plasmodium vivax] Length = 314 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 50/303 (16%), Positives = 96/303 (31%), Gaps = 55/303 (18%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---------AR 80 K+ + + ++ + + ++YG+++VS+ L R I +L ++ R Sbjct: 16 IKRNKFLDAQA----EHDLDYVYGINSVSSVLVKNERTIHSVLVNQHIRLNKKTRKQAYR 71 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVG-------KEAVHQGLALETAPLLSPTLDAVRNSQ 133 +D P++T + +D +VG L + Sbjct: 72 YIFDTLKERGIPIRTTSKRKMDDLVGGFPHNDIIMQTSYRTMKRAKHFLKDYPQKGKQKS 131 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA---------------- 177 + + L V D NIG I RS F D I K+ + Sbjct: 132 IYICLHDVYDNMNIGNICRSIFFFGGDSIFLKKKKKKKKLQEKLLQMKIDTPVLHSSVGT 191 Query: 178 ----KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + + + + + + KN+K +IL Sbjct: 192 SEFLDFFHVNDMLSFMDDLKSCGFKILSTCCRLDNSSTNDRLQELANVRLSKNEKAFIIL 251 Query: 234 GAEGKGLRPKTQETATSMAHLHM-------------PGII--KALNVSNAAAVALYITQN 278 G E KGL + + + + ++ G +LNV+NA A+ L+ + Sbjct: 252 GNETKGLSKEILDRSDACIYISGHHTEEASTPALNSNGNFTLDSLNVNNACAILLHHFAS 311 Query: 279 HFA 281 H A Sbjct: 312 HLA 314 >gi|313471801|sp|C6X9I5|TRML_METSD RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL Length = 154 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 45/146 (30%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I+R + E L ++ E+ N Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGTRLHLVKPLGFSLEDKQLKRAGLDYHEYANMQVHENW 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253 + + + + G E +GL + ++ T Sbjct: 64 EACCAALAGRRMFALTTKG--SARHSTIAFQEGDVFVFGPETRGLPEEIRDQFTPEHRVR 121 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN+AAV LY Sbjct: 122 LPMMPNNRSLNLSNSAAVLLYEAWRQ 147 >gi|264680077|ref|YP_003279986.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni CNB-2] gi|262210592|gb|ACY34690.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni CNB-2] Length = 164 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R A C + E + ++ E+ R Sbjct: 1 MFHIVLVAPEIPPNTGNVIRLAANTGCSLHLIEPLGFSMEDRHMRRAGLDYHEYANVARH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 ++ L+ + +++ S P L+ G+E KGL P+ + Sbjct: 61 ASWDAFLETCQPQRERMFAMTTHSSSPAHAMEFKAGDWLVFGSESKGLPPEVRAQFPNEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 121 RLRLPMLASQRSLNLSNAVAVTVFEAWRQ 149 >gi|77024970|gb|ABA61397.1| rRNA methylase [uncultured marine group II euryarchaeote HF70_59C08] Length = 234 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 71/229 (31%), Gaps = 4/229 (1%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 G+ + A+L+ L + RL + + D E Sbjct: 7 GIDAIEASLDAGEDITLVLALKECDDPRLIALLDRCMDAGIDVSFGSENDLWRMAEKSPA 66 Query: 113 GLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 LD + L+ +L V N+G +R A G+I T ++ Sbjct: 67 LALALVGREPVADLDTMLERGGLIWMLAGVQYQTNVGFCIRVAEVSGASGLIVTGEWTSD 126 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + + A+ ++ + D L+ + SW + + + + + L Sbjct: 127 D---RHRIVRAAMRTNRFMPVVFGCDELEALKSWKGRVLAIEDVGTEEPWDADLTGDVIL 183 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I+G E G+ + E A + M G + N+ AV Sbjct: 184 IIGGENAGVSKELLEVADQTIRIPMAGFTPSYNLQAPMAVVAVEALRQR 232 >gi|310640993|ref|YP_003945751.1| RNA methyltransferase, trmh family, group 2 [Paenibacillus polymyxa SC2] gi|309245943|gb|ADO55510.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus polymyxa SC2] Length = 154 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 3/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + ++ A L ++ + Sbjct: 1 MPLHIVLVEPEIPANTGNIARTCAATGTHLHLVKPLGFRTDDATLKRAGLDYWYAVHIEY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250 + + +K + F + K+ D L+ G E KGL P+ + Sbjct: 61 HESFAEVQEKYQAGRFFYATTKA--KQQYSDIKFQDGDFLVFGKETKGLPPELLAANPDT 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++LN+SN+AA+ +Y Sbjct: 119 CIKMPMSDKVRSLNLSNSAAIIVYEALRQL 148 >gi|319405240|emb|CBI78845.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp. AR 15-3] Length = 271 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 97/252 (38%), Gaps = 6/252 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + + ++ +K Q G + + L + LL L + Sbjct: 12 DDPRLEAYRNIREKDLVGRQH-QFIAEGKVILLSLLRSKEFSTLSLLVVAARLLSIMPIL 70 Query: 86 NLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS---PTLDAVRNSQLLMVLDHV 141 P P+ VP + +D I G L + L L + L+ VL + Sbjct: 71 KETKPTCPIYCVPQKIMDDIAGFHVHRGMLGIGERKKLPLLKEFLQNLPEKALISVLCGI 130 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 ++ N+GAI R+A AF+ GII K + ++GA ++PY + ++ + Sbjct: 131 SNHDNMGAIFRNAAAFASTGIIIDKTSCDPLYRKSIRVSAGAALNVPYTQGDDIDSIVTA 190 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + F LS + + L+ ALI G EG GL + + + M Sbjct: 191 LSNANFHLYALSPSASRYLKDAKATKHTALIFGTEGNGLPAHILQKS-ETLRIPMAYGFD 249 Query: 262 ALNVSNAAAVAL 273 ++NV+ A+ +AL Sbjct: 250 SINVATASGLAL 261 >gi|229815427|ref|ZP_04445759.1| hypothetical protein COLINT_02475 [Collinsella intestinalis DSM 13280] gi|229808960|gb|EEP44730.1| hypothetical protein COLINT_02475 [Collinsella intestinalis DSM 13280] Length = 303 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 54/268 (20%), Positives = 90/268 (33%), Gaps = 21/268 (7%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDWDANL 87 Y K+ +S + + A+ + LL L L Sbjct: 20 YTKLTERQLRSVLEPEKGIFIAESGKVIERAVEAGLEPVSFLLGERWLEQLTPLLDKVAD 79 Query: 88 PH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT--------LDAVRNSQLLM 136 H PV ++++ G LA P L+ A + Sbjct: 80 AHPELEIPVFVGAMDLLEQLTGFSVTRGALAAFRRPPLADPGAFLDGLVERADGRPVRVC 139 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VL+ + D N+GAI RSA A + DGI+ + A+ + G + +P+ RI + Sbjct: 140 VLEGIVDHSNVGAIFRSAAALNVDGILVSPTCVDPLYRRSARVSMGTVFQVPWTRIGSEA 199 Query: 197 DALQKM-HSWGFQTIGLSSDSKKPLEQEIKNDKI-------ALILGAEGKGLRPKTQETA 248 A S + +D A+ +G EG GL+ +T Sbjct: 200 RAWPYDGFEVLKGAGFTCSAMALSDDSVSLDDPSLLDIERHAIFMGTEGTGLQARTIAGC 259 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276 + M + +LNV+ A+AVA + Sbjct: 260 DKTIRIPMAHGVDSLNVAAASAVAFWQL 287 >gi|167627889|ref|YP_001678389.1| rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597890|gb|ABZ87888.1| rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 250 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 84/259 (32%), Gaps = 22/259 (8%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + + K+++ + + + + G+ A++ R+ + T D Sbjct: 5 SQKLLKEIKKLH-SPQGRKKSIYYIIEGLRCCDEAISRLPREDIIAIVTTGDRIDYPIDK 63 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + + ++++ + L A + D V ++VLD + DP Sbjct: 64 K-------YILSEKDLNELTQTQNSQGVL--ILAKKKDTSSDFVFKDDFILVLDRIQDPG 114 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIG ILR+A+A I+ + ++ GA + + NL+ Sbjct: 115 NIGTILRTAIAVGLTEIVLIDGTVDPFNPKAIRAGMGAQFSLKFRYFENLSAVRNYPTLK 174 Query: 206 GFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMA----HLHMPGII 260 + + E L+ G E G+ + I Sbjct: 175 ERKIWLTTPHEGVSCYSEEFKLSNSVLVFGEEANGIE-------DFSVGEKTMIPTLSNI 227 Query: 261 KALNVSNAAAVALYITQNH 279 ++LNV+ AA + L+ Sbjct: 228 ESLNVAQAATIYLFEGLRQ 246 >gi|153212559|ref|ZP_01948306.1| rRNA methylase, SpoU family [Vibrio cholerae 1587] gi|153825535|ref|ZP_01978202.1| rRNA methylase, SpoU family [Vibrio cholerae MZO-2] gi|229513615|ref|ZP_04403079.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TMA 21] gi|229521760|ref|ZP_04411178.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TM 11079-80] gi|229524673|ref|ZP_04414078.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae bv. albensis VL426] gi|229527380|ref|ZP_04416772.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae 12129(1)] gi|254285885|ref|ZP_04960847.1| rRNA methylase, SpoU family [Vibrio cholerae AM-19226] gi|262190923|ref|ZP_06049138.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae CT 5369-93] gi|124116430|gb|EAY35250.1| rRNA methylase, SpoU family [Vibrio cholerae 1587] gi|149740820|gb|EDM54911.1| rRNA methylase, SpoU family [Vibrio cholerae MZO-2] gi|150424067|gb|EDN16006.1| rRNA methylase, SpoU family [Vibrio cholerae AM-19226] gi|229335012|gb|EEO00497.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae 12129(1)] gi|229338254|gb|EEO03271.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae bv. albensis VL426] gi|229341354|gb|EEO06358.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TM 11079-80] gi|229349492|gb|EEO14448.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TMA 21] gi|262033190|gb|EEY51713.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae CT 5369-93] gi|327485167|gb|AEA79574.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae LMA3894-4] Length = 158 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 4/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193 + L N G I+R + + E + ++ + + + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251 + F+ ++ + + L+ G E +GL + + A Sbjct: 64 AAFIEYLQRERGSFRVFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAELIASLPAEQR 123 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 IRIPMMPEARSLNLSNAVAIIAFEAWRQ 151 >gi|319408914|emb|CBI82571.1| RNA methyltransferase [Bartonella schoenbuchensis R1] Length = 162 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 49/153 (32%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + L + L + N G ILR + I L ++ LEH Sbjct: 1 MEQRMPLHIALFQPDIAGNTGTILRLSACLGVHVHIIEPAGFNLSDRNLKRAGMDYLEHA 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 R + ++ M + + + LS+ +K L+ G E G+ E Sbjct: 61 LLERHIDWQHFIETMRHFNRRLLLLSTKAKTCYTDIRYQKNDVLLFGRESAGVPNYVYEA 120 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN++ + A+ Sbjct: 121 VDHTLTIPMQPHARSLNLAMSVAITTGEALRQI 153 >gi|313679270|ref|YP_004057009.1| tRNA guanosine-2'-o-methyltransferase [Oceanithermus profundus DSM 14977] gi|313151985|gb|ADR35836.1| tRNA guanosine-2'-O-methyltransferase [Oceanithermus profundus DSM 14977] Length = 214 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +++++V+ PHN+ AILR+A A + S ++ Sbjct: 16 RQPDLTVLMENVHKPHNLSAILRTADAVGVYEAHAVNPTGGVPTFHDTSGGSEKWVYLRV 75 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 K + L S+ + A++LGAE G+ P+ E A Sbjct: 76 HPNVEAALEHLKGRGFTVYAANL-SERAVDYREVDYTRPSAVLLGAEKWGVSPRAAELAD 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G++++LNVS AAAV L+ Q Sbjct: 135 ADVIIPMMGMVQSLNVSVAAAVILFEAQCQR 165 >gi|205356595|ref|ZP_03223358.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345600|gb|EDZ32240.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8421] Length = 227 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG L I +L K ++ + F +K + +T + K Sbjct: 2 IVYGKQIFFYILEYHKDCINELYLAKECD-KITFSKIAKSGFKIKKLDFKT-AQAYAKGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG L+ L+ ++ + +++L ++D NIGAI R+A A +I Sbjct: 60 NHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKL 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 E + +++SGA +P + ++ + ++ GF K+ +I N K Sbjct: 120 AME--GVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYASDGSGKEIHSVKISNGKK 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L+LG+EG GL K + + M +LNVS A A+ Sbjct: 178 VLVLGSEGFGLSSKIVKKCDECVGIVMKNNFDSLNVSAAFAILC 221 >gi|329889847|ref|ZP_08268190.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC 11568] gi|328845148|gb|EGF94712.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC 11568] Length = 269 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 89/258 (34%), Gaps = 9/258 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN---PSRKIFQLLATKNALARL 81 + + ++ T + G V L + + L+A K Sbjct: 9 PDDPRIAAFRDVKER-DLTGRHGLFIAEGE-VVLRVLASEASRCTPVSILIAEKRLEKLW 66 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138 + LP V ++ + G V LD++ + +V Sbjct: 67 EVLERLPGDVTVHMASQAVLNAVAGFDLHRGVLALGRKPEPVEPGALLDSLPERAVAVVA 126 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 + + N+G + R+A AF ++ + + + GA+ P Sbjct: 127 CGIGNHDNMGGLFRNAAAFGAGAVLLDRTCCDPFYRKAIRVSVGAVLRTPMAMGLEAEAM 186 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 + + GF+ + L+ +++ L + + AL+LG+EG GL + M G Sbjct: 187 IDLLQGRGFEVLALTPSAEQTLAELKPGRRTALLLGSEGPGLPRDIIARC-RPVGIRMAG 245 Query: 259 IIKALNVSNAAAVALYIT 276 +LNV+ +AVAL+ Sbjct: 246 GFDSLNVAATSAVALHHL 263 >gi|330818396|ref|YP_004362101.1| RNA methyltransferase [Burkholderia gladioli BSR3] gi|327370789|gb|AEA62145.1| RNA methyltransferase [Burkholderia gladioli BSR3] Length = 169 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 46/162 (28%), Gaps = 2/162 (1%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + +VL P N G ++R + P + A L ++ Sbjct: 1 MQSRKHFKQLETHMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKLRRA 60 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 E+ + + + + ++ + GAE +G Sbjct: 61 GLDYHEYAQMQVHRDWDAFIAREQPDPARLFAFTTRGSGRFHDHAFTPGDWFVFGAETRG 120 Query: 240 LRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L E L M ++LN+SN AV ++ Sbjct: 121 LSESMLERFPNEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 162 >gi|300024035|ref|YP_003756646.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans ATCC 51888] gi|299525856|gb|ADJ24325.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans ATCC 51888] Length = 158 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 25/68 (36%) Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ P L+LG E G A + + M +++LNV+ AA+ L Sbjct: 87 HAETPHIHFAFEPNDILMLGRESAGCPESVHAQADARITIPMRPGLRSLNVAVTAAIVLG 146 Query: 275 ITQNHFAK 282 + Sbjct: 147 EALRQTNQ 154 >gi|189425147|ref|YP_001952324.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter lovleyi SZ] gi|189421406|gb|ACD95804.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter lovleyi SZ] Length = 154 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 51/150 (34%), Gaps = 2/150 (1%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 +VL P N G I R A + + K + L ++ + + Sbjct: 1 MKTFNIVLIEPEIPPNTGNIARLCAATAATLHLVGKLGFSIDDRYLKRAGLDYWDKVDLK 60 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT 249 R NL Q+ F + + L+ G E GL + Sbjct: 61 RWENLEQLQQQHPEGRFWYLSTKVARNCYEQGI-YQPGDFLVFGKETAGLPAELLLANQE 119 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + MPG +++LN+SNAAAV LY Sbjct: 120 RCLTIPMPGQVRSLNLSNAAAVVLYEALRQ 149 >gi|94502287|ref|ZP_01308767.1| tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|161833855|ref|YP_001598051.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri GWSS] gi|94451153|gb|EAT14098.1| tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|152206345|gb|ABS30655.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri GWSS] Length = 239 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 6/233 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKE 108 +YG++ + A+ + + K +L P+ + G Sbjct: 6 IYGINPLYEAIKYKKKIYKIFIIKKFINFKLKKIIKFSYLKKIPIFERFNFKKNNQ-GVF 64 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 A+ + + P + LL++LD + D N G+I+R++ D II + Sbjct: 65 AIIDPIEFYKIEDIIPNIYYNGKIPLLLILDSITDVRNFGSIVRTSACTGVDAIIISN-- 122 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + ++ K++SG L +P + N+ ++ + ++G Q I ++ + + Sbjct: 123 NNIVNSDSIKTSSGGLFKVPICKEKNIIKIIKILKNYGIQIIAVTEKTDYLCYNINYRNP 182 Query: 229 IALILGAEGKGLRPKTQETATSMAHLH-MPGIIKALNVSNAAAVALYITQNHF 280 A ILG+E KG+ + L + + +LNVS A LY Sbjct: 183 TAFILGSEEKGISINYLSICNNRVKLPLIKNSLTSLNVSVACGAILYEAIRQR 235 >gi|254225421|ref|ZP_04919032.1| rRNA methylase, SpoU family [Vibrio cholerae V51] gi|125622055|gb|EAZ50378.1| rRNA methylase, SpoU family [Vibrio cholerae V51] Length = 158 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 4/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193 + L N G I+R + + E + ++ + + + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251 + F+ ++ + + L+ G E +GL + + A Sbjct: 64 VAFIEYLQRERGSFRLFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAELIASLPAEQR 123 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 IRIPMMPEARSLNLSNAVAIIAFEAWRQ 151 >gi|312882793|ref|ZP_07742527.1| RNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369577|gb|EFP97095.1| RNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] Length = 158 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 46/148 (31%), Gaps = 4/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193 + L N G I+R + + E + ++ + + + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251 + GF+ ++ + L+ G E +GL ++ A Sbjct: 64 PAFLQYLNENRQGFRLFACTTKASGHHVDAQFQQGDVLLFGPETRGLPEDIIDSLPAEQR 123 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 LRIPMMPDARSLNLSNAVAIIAFEAWRQ 151 >gi|297537769|ref|YP_003673538.1| TrmH family RNA methyltransferase [Methylotenera sp. 301] gi|297257116|gb|ADI28961.1| RNA methyltransferase, TrmH family, group 2 [Methylotenera sp. 301] Length = 154 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R + + L ++ E+ Sbjct: 1 MFHIVLFEPEIPPNTGNIIRLCANTGAALHLVKPLGFSLDDKQLKRAGLDYHEYSTMQVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 N + I + + + G E +GL + + TA Sbjct: 61 ENWEACKASLTGKRLFAITTKG--STRHSEIQFKAEDVFVFGPETRGLPEEIRAEFTAEH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN+AAV LY Sbjct: 119 RLRLPMLPDSRSLNLSNSAAVLLYEAWRQI 148 >gi|225180845|ref|ZP_03734293.1| RNA methyltransferase, TrmH family, group 2 [Dethiobacter alkaliphilus AHT 1] gi|225168326|gb|EEG77129.1| RNA methyltransferase, TrmH family, group 2 [Dethiobacter alkaliphilus AHT 1] Length = 152 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VL P N G + R+ + E L ++ +H+ Sbjct: 1 MHIVLVEPEIPPNTGNVSRTCAVTGTTLHLVEPMGFSIEERQLKRAGLDYWQHLNLQVHE 60 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252 +L L + + L+ G E GL Sbjct: 61 SLEHFLDYATDRNCWFLSTKGKQSYTD--IKYHKDDLLVFGRETAGLPDWLLARYPQKCV 118 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN+ A+ LY Sbjct: 119 RIPMGPDVRSLNLSNSVAIVLYEALRQ 145 >gi|311696507|gb|ADP99380.1| tRNA/rRNA methyltransferase (SpoU) [marine bacterium HP15] Length = 242 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 38/257 (14%), Positives = 85/257 (33%), Gaps = 31/257 (12%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSA---------ALNNPSRKIFQLLATKNALARLD 82 ++ +QK ++ + + G H V AL + + R Sbjct: 5 DIKKLHQK-KYRQSFGHYLVEGEHLVLELQKATDGQPALKASELYVTGAYEHWQSPFRT- 62 Query: 83 WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 + + + ++ QG+ P + + + V Sbjct: 63 -----------HVISERQMAQLAD-TRTPQGILALVPMPERPAEPVLGEKAIYL--HEVQ 108 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+G ILR+ F + + + + +++ GAL H+P LT + Sbjct: 109 DPGNLGTILRTLAWFGGFRCLLSPGSVDPFNPKVVRASMGALFHVPLETDVALTSLPDRY 168 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIK 261 S + S + + + + G E +G+ + + ++ + G I+ Sbjct: 169 QSLACLDLNGGSMASRG-----FREHDCYLFGNEARGVPREALDQLKAVPYSIQGQGQIE 223 Query: 262 ALNVSNAAAVALYITQN 278 +LN+++A + Y Sbjct: 224 SLNLASAVNMCTYELMR 240 >gi|94495460|ref|ZP_01302040.1| tRNA/rRNA methyltransferase [Sphingomonas sp. SKA58] gi|94424848|gb|EAT09869.1| tRNA/rRNA methyltransferase [Sphingomonas sp. SKA58] Length = 156 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 53/144 (36%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L N+GAILR A + I A L ++A R +N Sbjct: 7 IALYQPEIAGNVGAILRLAACLAVPVDIIMPTGFAFSDARLKRAAMDYGAAADVTRHANF 66 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + G + + +S+ + + L L++G+E G+ ++ A + Sbjct: 67 ETFDAVRRAGGRRLLLMSAHASQRLPDVRFKSDDVLLMGSESAGVPDDVRDLADIRVRIP 126 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 M ++LN++ + +A+ Sbjct: 127 MAPGFRSLNIAVSTGIAVAEALRQ 150 >gi|258404583|ref|YP_003197325.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM 5692] gi|257796810|gb|ACV67747.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM 5692] Length = 152 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 1/144 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R A + + E L ++ H+ + Sbjct: 3 IVLFEPEIPPNTGNIGRLCAATTTPLHLIEPLGFRLEDRYLKRAGLDYWPHLDLTVWPDW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + S + + ++LG E GL E A + + Sbjct: 63 PSFCDSLPSGARLVASSARQGAAYHTVA-FRTEDYIVLGPESSGLPSAICEQAAELVRIP 121 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 + G +++LN++NA +V LY Sbjct: 122 IWGQVRSLNLANATSVLLYEALRQ 145 >gi|83590588|ref|YP_430597.1| tRNA/rRNA methyltransferase (SpoU) [Moorella thermoacetica ATCC 39073] gi|83573502|gb|ABC20054.1| tRNA/rRNA methyltransferase (SpoU) [Moorella thermoacetica ATCC 39073] Length = 272 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 89/248 (35%), Gaps = 11/248 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL----LATKNALA 79 N+R K +S +S + + G+H + AL + L + T + Sbjct: 6 SPNNRYVKLARSLQDRS-WREKKGLYLIEGIHLLEEALQAGTSLEVVLHSPRIFTTSRGE 64 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----DAVRNSQL 134 +L + V + + I +A+ + + + L Sbjct: 65 KLVAGLQRA-GYQCLAVTEELMAGISTTMTPPGIVAVAPMQAKNLAELLAVTSPLHSPPL 123 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ + DP N+G I R+A+ G+I T+ + + +SA GA +P Sbjct: 124 FIIAAGIQDPGNLGTIWRTALGAGATGLILTRGCVDPYNPKVVRSAMGATFRLPVAGGVE 183 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 +K+ G + + + L Q +ALI+G+E G P+ AT + Sbjct: 184 PALLARKLQDAGLKLVVADVGAPLTLWQVDLRPPLALIVGSENHGPGPELLAAATERVGI 243 Query: 255 HMPGIIKA 262 + G + + Sbjct: 244 PLVGPVDS 251 >gi|313471804|sp|B2IBT9|TRML_BEII9 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL Length = 160 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 54/145 (37%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ L + P N G +LR + I P ++ L+ + R + Sbjct: 1 MLALYQPDIPQNCGTMLRLCACLGVEAAIIEPAGFPVSDRHFRRAGMDYLDQVALSRHVS 60 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 T G + + LS+ + +P L++G E G+ +A + + Sbjct: 61 FTAFRAWQIETGRRLVLLSTKASQPYTDFTFRPDDILLMGRESAGVPEAVHASADARVVI 120 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 + +++LNV+ AAA+ L Sbjct: 121 PLRPPMRSLNVAVAAAMVLGEALRQ 145 >gi|15642690|ref|NP_232323.1| rRNA methylase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586619|ref|ZP_01676404.1| rRNA methylase, SpoU family [Vibrio cholerae 2740-80] gi|121726684|ref|ZP_01679909.1| rRNA methylase, SpoU family [Vibrio cholerae V52] gi|147674422|ref|YP_001218183.1| rRNA methylase [Vibrio cholerae O395] gi|153820202|ref|ZP_01972869.1| rRNA methylase, SpoU family [Vibrio cholerae NCTC 8457] gi|153821286|ref|ZP_01973953.1| rRNA methylase, SpoU family [Vibrio cholerae B33] gi|227082811|ref|YP_002811362.1| rRNA methylase, SpoU family [Vibrio cholerae M66-2] gi|229507257|ref|ZP_04396762.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae BX 330286] gi|229509821|ref|ZP_04399302.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae B33] gi|229516943|ref|ZP_04406389.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC9] gi|229606764|ref|YP_002877412.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae MJ-1236] gi|254851231|ref|ZP_05240581.1| rRNA methylase [Vibrio cholerae MO10] gi|255744345|ref|ZP_05418297.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholera CIRS 101] gi|262158545|ref|ZP_06029660.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae INDRE 91/1] gi|262170061|ref|ZP_06037750.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC27] gi|298500489|ref|ZP_07010293.1| RNA methyltransferase, TrmH family, group 2 [Vibrio cholerae MAK 757] gi|9657291|gb|AAF95836.1| rRNA methylase, SpoU family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549178|gb|EAX59211.1| rRNA methylase, SpoU family [Vibrio cholerae 2740-80] gi|121630845|gb|EAX63227.1| rRNA methylase, SpoU family [Vibrio cholerae V52] gi|126509257|gb|EAZ71851.1| rRNA methylase, SpoU family [Vibrio cholerae NCTC 8457] gi|126521218|gb|EAZ78441.1| rRNA methylase, SpoU family [Vibrio cholerae B33] gi|146316305|gb|ABQ20844.1| rRNA methylase, SpoU family [Vibrio cholerae O395] gi|227010699|gb|ACP06911.1| rRNA methylase, SpoU family [Vibrio cholerae M66-2] gi|227014583|gb|ACP10793.1| rRNA methylase, SpoU family [Vibrio cholerae O395] gi|229346006|gb|EEO10978.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC9] gi|229353295|gb|EEO18234.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae B33] gi|229354762|gb|EEO19683.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae BX 330286] gi|229369419|gb|ACQ59842.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae MJ-1236] gi|254846936|gb|EET25350.1| rRNA methylase [Vibrio cholerae MO10] gi|255737870|gb|EET93263.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholera CIRS 101] gi|262021469|gb|EEY40181.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC27] gi|262029706|gb|EEY48355.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae INDRE 91/1] gi|297540658|gb|EFH76715.1| RNA methyltransferase, TrmH family, group 2 [Vibrio cholerae MAK 757] Length = 158 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 4/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193 + L N G I+R + + E + ++ + + + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251 + F+ ++ + + L+ G E +GL + + A Sbjct: 64 AAFIEYLQRERGSFRLFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAELIASLPAEQR 123 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 IRIPMMPEARSLNLSNAVAIIAFEAWRQ 151 >gi|124023764|ref|YP_001018071.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9303] gi|123964050|gb|ABM78806.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9303] Length = 229 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 56/152 (36%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R + L ++L+HV PHN+ AILRS A + S + Sbjct: 17 CRMADLTVLLEHVEKPHNLSAILRSCDAVGVLEAHAVNYSGRLPTFNSTAQGSQKWIPLK 76 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + K + L +++ + + + A +LGAE GL Sbjct: 77 EHSSIEVAVKAIKESGFRLYGTHLGGNARDYRDCD-FCEPTAFVLGAEKWGLSELATPLM 135 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G++++LNVS AAA L+ Sbjct: 136 DEGIFIPMCGMVQSLNVSVAAATLLFEALRQR 167 >gi|110634557|ref|YP_674765.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1] gi|110285541|gb|ABG63600.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1] Length = 266 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 102/282 (36%), Gaps = 28/282 (9%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 I +I S +D + + + G V L Sbjct: 7 RIDSPDDPRIASYRDI-------------RERDLIGR------QGRFVAEG-KVVLNVLF 46 Query: 63 NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + SR LL + A +P P+ +D I G +H+G+ Sbjct: 47 STSRFSAESVLLLENRVAGMEELLARIPEHVPLYVAGSAVMDAIAGFH-MHRGVLAIGLR 105 Query: 121 LLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 + D L++ L + + N+GAI R+A AF D I+ Sbjct: 106 GEEDSADELITAPPARALVVALSGIANHDNMGAIFRNAAAFGADAILLDSHCCDPLYRKA 165 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 + + GA+ +P+ R + + ++ + + GF + LS ++ +E + + A++LGAE Sbjct: 166 IRVSVGAVLKVPFARGGDASTLIETLTARGFDILALSPSGEREIETVKRAPRTAVLLGAE 225 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 G GL + M +LNV+ A A+AL+ Sbjct: 226 GPGLPAALLARL-PSVRIPMRNDFDSLNVAAATAIALHRLWR 266 >gi|332531748|ref|ZP_08407633.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudoalteromonas haloplanktis ANT/505] gi|332038724|gb|EGI75166.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudoalteromonas haloplanktis ANT/505] Length = 154 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + + ++ H Sbjct: 1 MLDIVLYQPEIPPNTGNIIRLCANTGYALHLIEPLGFEWDDKRVKRAGLDY--HEFSHVQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + ++ + + L+ G E +GL + + Sbjct: 59 RHASFEDYLEKCKPKKVYACTTKGSQFHHEASYEAGDCLVFGPETRGLPDEMIQALPNDQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA AV +Y + Sbjct: 119 RVRIPMQANSRSMNLSNAVAVFVYESWRQL 148 >gi|94265230|ref|ZP_01288990.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1] gi|94272199|ref|ZP_01292086.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1] gi|93450204|gb|EAT01499.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1] gi|93454264|gb|EAT04577.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1] Length = 153 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 53/153 (34%), Gaps = 4/153 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + +VL P N G+I R A + ++ L ++ +H+ Sbjct: 1 MPQPPFNVVLVEPEIPPNTGSIARLCGATDTVLHLVHPLGFDTDDKHLKRAGLDYWQHVR 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-T 247 + SNL + L + + LI G E KGL + E Sbjct: 61 IVHWSNLEEFLAAQDENRLYFLSKKTQRPYTA--ISFTPGDFLIFGRETKGLPAEILELY 118 Query: 248 ATSMAHLHM-PGIIKALNVSNAAAVALYITQNH 279 A + M I++LN++ AAA+ LY Sbjct: 119 ADRCLLIPMSNPHIRSLNLAQAAAIVLYEALRQ 151 >gi|88856437|ref|ZP_01131095.1| rRNA methyltransferase [marine actinobacterium PHSC20C1] gi|88814304|gb|EAR24168.1| rRNA methyltransferase [marine actinobacterium PHSC20C1] Length = 266 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 96/241 (39%), Gaps = 6/241 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY + ++ + AL + R + +LA ++ + Sbjct: 15 ADYSHQTDVALRKAQGTEHGLYLAESALVLQRALRSGHR-VRSVLALGTSVDEIVELVG- 72 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P+ T + ++ G +A P L + + +++ +++L++V DP N+ Sbjct: 73 -EDVPIFTGDGSLLAELTGYVLHRGVIASMQRPPLPTPTELLTDARRIVILENVVDPTNV 131 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RS D ++ T++ S + + G + +P+ RI N D + + GF Sbjct: 132 GAIFRSVAGIGADAVLVTEQCSDPFYRRAIRVSMGTVLQVPWTRIGNWADTRVLLTASGF 191 Query: 208 QTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 Q +K+AL+LG EG GL + + A ++ + M I +LN Sbjct: 192 QIAALALEDGAVSLRDYAADAPEKVALVLGTEGHGLTREAIDAADTIVQIPMRHGIDSLN 251 Query: 265 V 265 V Sbjct: 252 V 252 >gi|253998269|ref|YP_003050332.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4] gi|253984948|gb|ACT49805.1| RNA methyltransferase, TrmH family, group 2 [Methylovorus sp. SIP3-4] Length = 164 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 45/146 (30%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I+R + E L ++ E+ N Sbjct: 14 IVLYQPEIPPNTGNIIRLCANTGTRLHLVKPLGFSLEDKQLKRAGLDYHEYANMQVHENW 73 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253 + + + + G E +GL + ++ T Sbjct: 74 EACCAALAGRRMFALTTKG--SARHSTIAFQEGDVFVFGPETRGLPEEIRDQFTPEHRVR 131 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN+AAV LY Sbjct: 132 LPMMPNNRSLNLSNSAAVLLYEAWRQ 157 >gi|221065310|ref|ZP_03541415.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni KF-1] gi|220710333|gb|EED65701.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni KF-1] Length = 164 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R A C + E + ++ E+ R Sbjct: 1 MFHIVLVAPEIPPNTGNVIRLAANTGCSLHLIEPLGFSMEDRHMRRAGLDYHEYANVARH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 ++ + + +++ S P L+ G+E KGL P+ + Sbjct: 61 ASWDAFIDSCQPRRERMFAMTTHSSSPAHAMEFKAGDWLVFGSESKGLPPEVRAQFPNEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 121 RLRLPMLASQRSLNLSNAVAVTVFEAWRQ 149 >gi|317063710|ref|ZP_07928195.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|313689386|gb|EFS26221.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] Length = 158 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 5/103 (4%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + ++ +K+ ++ G E +G+ Sbjct: 56 YWHLVDLKVWESYEDFINGNPDAVIYYATTKTKQKYTDIKFGKNDFVMFGPESRGIPEDI 115 Query: 245 QET-ATSMAHLHMPGIIKALNVSNAAAVALYITQNH----FAK 282 A + M + ++LN+SN+AA+ LY F K Sbjct: 116 LNRNADHCITIPMIDMGRSLNLSNSAAIILYEALRQTDFDFNK 158 >gi|209550660|ref|YP_002282577.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536416|gb|ACI56351.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 274 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 50/263 (19%), Positives = 100/263 (38%), Gaps = 13/263 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYG---VHTVSAALNNPS----RKIFQLLA 73 A + + ++ ++ T + G + ++ A KI L Sbjct: 7 AIDSADDPRIAEFRNIRER-DLTGRENRFIAEGTVVLRMLAEAHAQDRGFLAEKILLLRN 65 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPTLDAVRN 131 + + + LP PV +D +VG LA + L+A+ Sbjct: 66 RVDGVMPILE--RLPADVPVYVAEADVLDGVVGFHLHRGVLALGRREDRGEAALLEALPE 123 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L++V +++ N G++ R+A AF D ++ + + + G++ +P++R Sbjct: 124 RALVLVGCGISNHDNAGSMFRNAAAFRADALLLDETCCDPLYRKALRVSVGSVLSVPHLR 183 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 D L + GF LS K + + ++AL++G EG+GL Sbjct: 184 GGKAMDVLLSLAERGFAIWTLSPHGKTDIRAIPASARMALVIGTEGEGLPEALLARF-HS 242 Query: 252 AHLHMPGIIKALNVSNAAAVALY 274 A + + +LN + A +AL+ Sbjct: 243 ARIPQSEDLDSLNAATATGIALF 265 >gi|68065966|ref|XP_674967.1| RNA methyltransferase [Plasmodium berghei strain ANKA] gi|56493872|emb|CAH94657.1| RNA methyltransferase, putative [Plasmodium berghei] Length = 296 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 92/278 (33%), Gaps = 7/278 (2%) Query: 7 KKSEKIFSLK----DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 K +KI +K ++ Y + + + K + +KS + F+ T+ Sbjct: 18 KGQKKIDYIKKNGENNEYLSISKRSKLMKYIIRLRKKSNFRKKNNAFFVKDTKTIMNLSR 77 Query: 63 NPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 + + + +L+ + D N + + +D + + + Sbjct: 78 DHNLTMEVVLSNSKTFLKYFKDKCNKLYYVNNDILNYIFLDSLKFMKGKNYDSVAIVKIP 137 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 + + L+ LD + +N+G IL A + + D I + + Sbjct: 138 NIENTKTEKKIKFLLALDRIRYAYNLGKILNIAYSMNIDSIFYIHNTVDPYNHNVMDITR 197 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGL 240 G IPY S + + ++ + N I LILG E G Sbjct: 198 GKHLFIPYNVGSYSELNKFCEQNNLVPIVAHTNGIAPQAFLKNLTNQGICLILGNESYGP 257 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A L M + +LNVS AA + ++ +N Sbjct: 258 HKDIFSFA-KPICLPMHEMTNSLNVSVAAGIIIHYLKN 294 >gi|317507017|ref|ZP_07964783.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974] gi|316254684|gb|EFV13988.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974] Length = 105 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 5/62 (8%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII-----KALNVSNAAAVALYITQNH 279 + A + G E GL A + M ++LN++ AA + LY T Sbjct: 44 LSGPCAWLFGNEAHGLPEPVARAADHRVAVPMRPAAGFAPPESLNLAVAAGICLYETARL 103 Query: 280 FA 281 + Sbjct: 104 RS 105 >gi|307069598|ref|YP_003878075.1| putative RNA methyltransferase, TrmH family, group 3 [Candidatus Zinderia insecticola CARI] gi|306482858|gb|ADM89729.1| putative RNA methyltransferase, TrmH family, group 3 [Candidatus Zinderia insecticola CARI] Length = 239 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 98/234 (41%), Gaps = 6/234 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 ++G + +S L + I + + K ++KI G Sbjct: 7 IIFGKNIISLILKYYLKNIKIIFY--EKKKKYFIKKIKNKNLIFKKKNKIFLNKICGNNY 64 Query: 110 VH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 ++ + + + ++ ++L+ +N+ +N+G+ +R++ A + D II + Sbjct: 65 HQGIVSIIKKIKINKNIKKIIKNKKKKKIFLILNKINNINNLGSCIRTSNALNIDLIILS 124 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 K+ + ++ K++ GA PYI++ ++ ++ + F+ IG SK L Sbjct: 125 KKCINKNNKIILKTSLGANLITPYIKVKSIKKIIKYLKKKNFKIIGTWEKSKLNLFNFKF 184 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 I LI+G+E G+ ++ + + M G I LNVS A + LY + Sbjct: 185 PKLIVLIMGSEKNGISKTIKKMCDFIISIPMLGKINNLNVSVATGIFLYEIIKN 238 >gi|304569674|ref|YP_009267.2| RNA methyltransferase [Desulfovibrio vulgaris str. Hildenborough] gi|311232387|gb|ADP85241.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio vulgaris RCH1] Length = 383 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 86/231 (37%), Gaps = 12/231 (5%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 G+ V L + +I + + D V Q +DK+ Sbjct: 144 GLKPVLELLASDPARIDTVFIRRGRRTPDTDRLMDLCREMRVRFSLVEGQVLDKL--YAG 201 Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ LD L++ LD V DP N G + RS A G+I Sbjct: 202 GHQGVVARLFEAGYVELDDLLQDAPDAPLPLIIALDQVQDPGNAGTLARSLYALGGAGLI 261 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQ 222 + + A ++A+GALE +P R++NL A + + + + Sbjct: 262 VPRHNAAYLGAGAHRAAAGALEKLPVARVANLARALDEAAEAGYAIYGAMCGEGSVNAFT 321 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L+LG E KG+RP + ++ H+ M + NV+ A A+ L Sbjct: 322 ATLRTPCVLVLGNEDKGIRPNVAKRCDTLLHIPMLRDFDSFNVAQAGALLL 372 >gi|323524635|ref|YP_004226788.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001] gi|323381637|gb|ADX53728.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. CCGE1001] Length = 156 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A L ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKLRRAGLDYHEYAQMNVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 +N + K + ++ + GAE +GL E + Sbjct: 61 ANWAAFIAKESPEPSRMFAFTTRGSGRFHDHAFAAGDWFVFGAETRGLPDSVLEQFGSEE 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN A+ ++ Sbjct: 121 RVRLPMRPGNRSLNLSNTVAIVVFEAWRQ 149 >gi|226363791|ref|YP_002781573.1| rRNA methyltransferase [Rhodococcus opacus B4] gi|226242280|dbj|BAH52628.1| rRNA methyltransferase [Rhodococcus opacus B4] Length = 322 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 65/256 (25%), Positives = 116/256 (45%), Gaps = 17/256 (6%) Query: 41 RHTSQPENLFLYG------VHTVSAALNNP--SRKIFQLLATK-NALARLDWDANLPHPF 91 R L G + V L + ++ + T+ + + Sbjct: 66 RGRQAAGRKVLDGPETVLGRNPVVECLRAGVPATALYVAVGTESDDRLKESVQRAADAGI 125 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDP 144 + VP +D++ +HQG+AL+ P D + + LL+ LD++ DP Sbjct: 126 SILEVPRTDLDRLSA-NGMHQGIALQVPPYRYAHPDDLIAEARKHQEAPLLVALDNITDP 184 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GA++RS AF G++ +R S S +AV ++++GA +P R +NLT L+ S Sbjct: 185 RNLGAVVRSVAAFGGHGVVIPERRSASVTAVAWRTSAGAAARLPIARATNLTRTLKDWAS 244 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G Q +GL + L++ + + +++G+EGKGL +E ++ + M G +++LN Sbjct: 245 KGVQVVGLDAGGDTTLDEFDGSGPVVVVVGSEGKGLSRLVRENCDAILSIPMAGPVESLN 304 Query: 265 VSNAAAVALYITQNHF 280 S AA V L Sbjct: 305 ASVAAGVVLADIARRR 320 >gi|261211259|ref|ZP_05925548.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC341] gi|260839760|gb|EEX66371.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC341] Length = 158 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 4/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193 + L N G I+R + + E + ++ + + + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251 + F+ ++ + + L+ G E +GL + + A Sbjct: 64 AAFIDYLQRERETFRLFACTTKTTQHHVDAQFQQGDVLMFGPETRGLPAELIASLPAEQR 123 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 IRIPMMPEARSLNLSNAVAIIAFEAWRQ 151 >gi|319898485|ref|YP_004158578.1| RNA methyltransferase [Bartonella clarridgeiae 73] gi|319402449|emb|CBI75990.1| RNA methyltransferase [Bartonella clarridgeiae 73] Length = 158 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 50/149 (33%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L + L + N G ILR + F I L ++ LE R Sbjct: 1 MTLHIALFQPDIAGNTGTILRLSACFGLHVHIIEPAGFDLSDRNLKRAGMDYLERASLER 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + + M + + + LS+ +K + L+ G E G+ + A Sbjct: 61 HLDWQNFIDTMQRFNHRLLLLSTKAKTCYTEIRYQKNDVLLFGRESAGVPDYVYKAADYA 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN++ + A+ Sbjct: 121 LTIPMLPHARSLNLAMSVAITTGEALRQI 149 >gi|46447870|gb|AAS94526.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio vulgaris str. Hildenborough] Length = 249 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 86/231 (37%), Gaps = 12/231 (5%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 G+ V L + +I + + D V Q +DK+ Sbjct: 10 GLKPVLELLASDPARIDTVFIRRGRRTPDTDRLMDLCREMRVRFSLVEGQVLDKL--YAG 67 Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ LD L++ LD V DP N G + RS A G+I Sbjct: 68 GHQGVVARLFEAGYVELDDLLQDAPDAPLPLIIALDQVQDPGNAGTLARSLYALGGAGLI 127 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQ 222 + + A ++A+GALE +P R++NL A + + + + Sbjct: 128 VPRHNAAYLGAGAHRAAAGALEKLPVARVANLARALDEAAEAGYAIYGAMCGEGSVNAFT 187 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L+LG E KG+RP + ++ H+ M + NV+ A A+ L Sbjct: 188 ATLRTPCVLVLGNEDKGIRPNVAKRCDTLLHIPMLRDFDSFNVAQAGALLL 238 >gi|317057821|ref|YP_004106288.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7] gi|315450090|gb|ADU23654.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7] Length = 207 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 2/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R +L +VL P N G I R+ + + L ++ + + Sbjct: 39 QDRTHRLNIVLVEPRIPQNTGNISRTCAVTGAALHMVRPFGFEIDDKKLKRAGLDYWDKL 98 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246 +N+ D K F ++ + +I G E GL + Sbjct: 99 DIYYYNNIEDFFAKNDGAYFFFT-TKGRQVHSEAVYPEDRPVYIIFGREDAGLPEELLYA 157 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN+ A+A Y Sbjct: 158 HPDECVRIPMRNTLRSLNLSNSVAIATYEVLRQ 190 >gi|120603957|ref|YP_968357.1| RNA methyltransferase [Desulfovibrio vulgaris DP4] gi|120564186|gb|ABM29930.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio vulgaris DP4] Length = 274 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 86/231 (37%), Gaps = 12/231 (5%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 G+ V L + +I + + D V Q +DK+ Sbjct: 35 GLKPVLELLASDPARIDTVFIRRGRRTPDTDRLMDLCREMRVRFSLVEGQVLDKL--YAG 92 Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ LD L++ LD V DP N G + RS A G+I Sbjct: 93 GHQGVVARLFEAGYVELDDLLRDAPDAPLPLIIALDQVQDPGNAGTLARSLYALGGAGLI 152 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQ 222 + + A ++A+GALE +P R++NL A + + + + Sbjct: 153 VPRHNAAYLGAGAHRAAAGALEKLPVARVANLARALDEAAEAGYAIYGAMCGEGSVNAFT 212 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 L+LG E KG+RP + ++ H+ M + NV+ A A+ L Sbjct: 213 ATLRTPCVLVLGNEDKGIRPNVAKRCDTLLHIPMLRDFDSFNVAQAGALLL 263 >gi|325928467|ref|ZP_08189658.1| rRNA methylase [Xanthomonas perforans 91-118] gi|325541184|gb|EGD12735.1| rRNA methylase [Xanthomonas perforans 91-118] Length = 356 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 10/236 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 LYG++ V A + + +L ++ + + + + V + K+ Sbjct: 116 LYGINAVQAVFKARPQALRKLYLSEARIPQFKALLAWCVTQRIGYRVVDEADLSKLAA-S 174 Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 A H+G+ E + L + L + LD V +PHN GAILRS+ F G++ Sbjct: 175 AHHEGIVAEVLRVAPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLL 234 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + S A+ A G E +P +++ + A+ ++ GF D + + Sbjct: 235 LPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDVFAA 294 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277 ++ ++GAE +G+ + G +++LNV++A AV A + + Sbjct: 295 ALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 350 >gi|302817646|ref|XP_002990498.1| hypothetical protein SELMODRAFT_131805 [Selaginella moellendorffii] gi|300141666|gb|EFJ08375.1| hypothetical protein SELMODRAFT_131805 [Selaginella moellendorffii] Length = 264 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 1/157 (0%) Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + A R + V++ + D NI A+ R+A AF + + Sbjct: 59 QKFDQIIANRTFSICPVVEGLFDIGNICAVFRTAEAFGLQSVHVIANSDQKRYKEARNIS 118 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKG 239 GA + + N + +Q + G++ P+ + A+I G E G Sbjct: 119 MGAEKWLDVEVWENTNECVQVLRKRGYRIAVTDMGADTVPIHELDWTIPTAVIFGNEHNG 178 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + A H+ M G++ + NVS AA + +Y Sbjct: 179 TSEEALALADVKCHIPMVGMVDSFNVSVAAGILMYHV 215 >gi|149195112|ref|ZP_01872204.1| RNA methyltransferase TrmH, group 3 [Caminibacter mediatlanticus TB-2] gi|149134825|gb|EDM23309.1| RNA methyltransferase TrmH, group 3 [Caminibacter mediatlanticus TB-2] Length = 221 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 11/224 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG V + + ++L A + F +K + + + + + K + Sbjct: 2 IVYGKRIVEYIIQKHPDIVKEILI---AKKLNKNELKKFQNFEIKFIDNK-LAQKLSKNS 57 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG + + +++LD+V D NIGAI R+A A D +I T Sbjct: 58 NHQGFFAKI---EFTPQNWDIIGDKILILDNVTDMGNIGAITRTAYALGIDLLIITGINE 114 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 ++ S+ AL+ ++I ++ + L ++ + + + + +KI Sbjct: 115 LKWDRIIRTSSGAALD----MKIISIKNILDVINILKTKGYLIVGADLGGKCKPSRKNKI 170 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ALILG EG+GL K ++ + + M +LNVS AA + + Sbjct: 171 ALILGNEGEGLNKKIKQKLDEVITIEMKREFDSLNVSVAAGILI 214 >gi|78048990|ref|YP_365165.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037420|emb|CAJ25165.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 390 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 10/236 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 LYG++ V A + + +L ++ + + + + V + K+ Sbjct: 150 LYGINAVQAVFKARPQALRKLYLSEARIPQFKALLAWCVTQRIGYRVVDEADLSKLAA-S 208 Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 A H+G+ E + L + L + LD V +PHN GAILRS+ F G++ Sbjct: 209 AHHEGIVAEVLRVAPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLL 268 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + S A+ A G E +P +++ + A+ ++ GF D + + Sbjct: 269 LPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDVFAA 328 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277 ++ ++GAE +G+ + G +++LNV++A AV A + + Sbjct: 329 ALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 384 >gi|260889769|ref|ZP_05901032.1| 23S rRNA methyltransferase [Leptotrichia hofstadii F0254] gi|260860375|gb|EEX74875.1| 23S rRNA methyltransferase [Leptotrichia hofstadii F0254] Length = 256 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 76/236 (32%), Gaps = 9/236 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + G ++ + +++ ++ D + + + Sbjct: 24 YRDENSIFKAEGEKFLNE-----NINFNKIIVKESKFEYFDEKYEISRHDNLTILKDNLF 78 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 D++ + +++LD + DP N G I+R+ +A + Sbjct: 79 DEVS----TQENSQGIIFLYSKNLNTIEDIQGDVVILDDIQDPGNAGTIIRTMIAANFQN 134 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I TK + ++ + + I + + + E Sbjct: 135 LILTKGSVDVYNPKTVRATMSGIFKLNIIYETPENIVKFLNKKNYLKIATALHEDSVSYE 194 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A I G EG G+ E + A + + G I++LNVS A + LY + Sbjct: 195 KIELRKNNAFIFGHEGGGVSDYLIENSHIKAIIPIYGNIESLNVSVATGIFLYKMR 250 >gi|295675360|ref|YP_003603884.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. CCGE1002] gi|295435203|gb|ADG14373.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. CCGE1002] Length = 156 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + + ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDTKMRRAGLDYHEYAEMNVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250 ++ + K + ++ + GAE +GL E T Sbjct: 61 TDWDAFIAKETPDPSRMFAFTTRGSGRFHDHAFQPGDWFVFGAETRGLPDTVLERFTNEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149 >gi|229083785|ref|ZP_04216100.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44] gi|228699525|gb|EEL52195.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44] Length = 162 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R+ A + + ++ +L ++ +H+ Sbjct: 1 MGVHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQE-TAT 249 ++ + +K F + + + G E GL E Sbjct: 61 YDSIEEFYEKNSDGEFFYLTKYGEKAHTQFDYSNVEKNYYFVFGRETNGLPANVIEENFD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M +++LN+SN AA+ +Y Sbjct: 121 HCLRIPMTDKVRSLNLSNTAAILIYEAFRQQN 152 >gi|261408854|ref|YP_003245095.1| TrmH family RNA methyltransferase [Paenibacillus sp. Y412MC10] gi|261285317|gb|ACX67288.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. Y412MC10] Length = 154 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + ++ L ++ + Sbjct: 1 MALHIVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 + + + + + D L+ G E KGL + A Sbjct: 61 HDSFEELQALYPEGRYFYATTKATKRYMD--IEYQDGDFLVFGKETKGLPRELLAANAEH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++LN+SN+AA+ +Y Sbjct: 119 CIRMPMTDKVRSLNLSNSAAIMVYEALRQL 148 >gi|329902629|ref|ZP_08273188.1| tRNA (cytosine34-2'-O-)-methyltransferase [Oxalobacteraceae bacterium IMCC9480] gi|327548687|gb|EGF33332.1| tRNA (cytosine34-2'-O-)-methyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 156 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R + P + A + ++ ++ Sbjct: 1 MFHVVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDDAKMRRAGLDYHDYATMQVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + + + L++ P + G+E KGL P +E+ + Sbjct: 61 PDWSRFIATVQPDPQRMFALTTHGSTPFATGQFRPGDVFVFGSETKGLDPALRESFPPSQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV +Y Sbjct: 121 RIRLPMRPDNRSLNLSNTVAVVVYEAWRQ 149 >gi|222151824|ref|YP_002560984.1| SpoU rRNA methylase family protein [Macrococcus caseolyticus JCSC5402] gi|222120953|dbj|BAH18288.1| SpoU rRNA methylase family protein [Macrococcus caseolyticus JCSC5402] Length = 157 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 1/147 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I RS A D + ++ +L ++ + + ++ Sbjct: 6 IVLYQPEIPANTGNIARSCAATDTDLHLIRPLGFSTDDKMLRRAGLDYWKFVNITYYDSI 65 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254 + +K + + ++K I G E GL +E + + Sbjct: 66 EEFFEKNKGHYYLLTKFGKKPHTTFDYSNTDEKHYFIFGKETTGLPDWVKEKYMDTALRI 125 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 M +++LN+SN AA+ +Y Sbjct: 126 PMNDNVRSLNLSNTAAILIYEALRQQN 152 >gi|299534093|ref|ZP_07047445.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni S44] gi|298718002|gb|EFI59007.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni S44] Length = 164 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R A C + E + ++ E+ R Sbjct: 1 MFHIVLVAPEIPPNTGNVIRLAANTGCSLHLIEPLGFSMEDRHMRRAGLDYHEYANVARH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 ++ L+ + +++ S P L+ G+E KGL P+ + Sbjct: 61 ASWDALLETCQPQRERMFAMTTHSSSPAHAMEFKAGDWLVFGSESKGLPPEVRAQFPNEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 121 RLRLPMLASQRSLNLSNAVAVTVFEAWRQ 149 >gi|210633174|ref|ZP_03297710.1| hypothetical protein COLSTE_01623 [Collinsella stercoris DSM 13279] gi|210159214|gb|EEA90185.1| hypothetical protein COLSTE_01623 [Collinsella stercoris DSM 13279] Length = 303 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 53/280 (18%), Positives = 94/280 (33%), Gaps = 22/280 (7%) Query: 19 HYAKLRRNH-RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA--TK 75 H A L Y K+ +S + + A+ + LL Sbjct: 8 HVASLDDPRLEAYTKLTERQLRSVLEPEKGIFIAESGKVIERAVEAGLEPVSFLLGERWL 67 Query: 76 NALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-- 130 + L H PV + ++++ G LA P + + Sbjct: 68 EHMTPLFDVVAREHPGLEVPVFVGAMELLEELTGFSVTRGALAAFRRPPMPDARAFLDGL 127 Query: 131 ------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + +L+ + D N+GAI RSA A + DGI+ + A+ + G + Sbjct: 128 VDRAAGRPVRVCILEGIVDHSNVGAIFRSAAALNVDGILASPTCVDPLYRRSARVSMGTV 187 Query: 185 EHIPYIRISNLTDALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDK-------IALILGAE 236 +P+ RI + + + +D +A+ +G E Sbjct: 188 FQVPWTRIGTEARTWPRDGLAVLHDAGFTCAAMALSDDSVSLDDPALQSIERLAVFMGTE 247 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 G GL+PKT + M + +LNV+ A+AVA + Sbjct: 248 GAGLQPKTIAGCDKTIRIPMAHGVDSLNVAAASAVAFWQL 287 >gi|88799008|ref|ZP_01114589.1| putative tRNA methyltransferase [Reinekea sp. MED297] gi|88778235|gb|EAR09429.1| putative tRNA methyltransferase [Reinekea sp. MED297] Length = 224 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 30/69 (43%) Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 SD + ALILGAE G+ P+ + A + M G ++LNVS A+ + Sbjct: 97 HWSDRAISYREADYTRPFALILGAEKYGISPEAADAADEHLIIPMVGACESLNVSVASGI 156 Query: 272 ALYITQNHF 280 L + Sbjct: 157 ILQEAMHQR 165 >gi|301776018|ref|XP_002923430.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Ailuropoda melanoleuca] Length = 360 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 23/223 (10%) Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQ 133 A PV Q +D + + VHQG+ +E +PL Q Sbjct: 94 ELLRAAEARDIPVLRPRRQKLDALC-RSQVHQGVCMEVSPLKPRPWTEVGEARPGDDPQQ 152 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL+ + DP N+GA+LRSA D IIT+ R S + V++K+++GA+E + Sbjct: 153 LWLVLERIQDPRNLGALLRSAHFLGVDKIITSGRNSCPLTPVVSKASAGAMEVMDVFSTD 212 Query: 194 N-----------LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + + G + S + + + L+LG EG GL Sbjct: 213 DLAGFLQAKAREGWLVAGTVGCPGPEISPSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQ 272 Query: 243 KTQETATSMAHL-H---MPGIIKALNVSNAAAVALYITQNHFA 281 Q + + + +P +++LNVS AA + L+ + Sbjct: 273 AVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICSQRK 315 >gi|296113212|ref|YP_003627150.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4] gi|295920906|gb|ADG61257.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4] gi|326560205|gb|EGE10593.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis 7169] gi|326562764|gb|EGE13060.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis 103P14B1] gi|326564943|gb|EGE15145.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis 46P47B1] gi|326566634|gb|EGE16776.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1] gi|326567874|gb|EGE17975.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis 12P80B1] gi|326570284|gb|EGE20329.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8] gi|326571021|gb|EGE21045.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7] gi|326573319|gb|EGE23287.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis 101P30B1] gi|326575785|gb|EGE25708.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis CO72] gi|326576865|gb|EGE26771.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis O35E] Length = 181 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 51/155 (32%), Gaps = 8/155 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VL P+N G+I+R + + L ++ E+ Sbjct: 9 IHIVLFSPKIPNNTGSIIRLCANTGAQLHLVKPLGFELDDTRLKRAGLDYHEYATLSVHD 68 Query: 194 NLTDALQ------KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 N + T + + + K+AL+ G+E GL + + Sbjct: 69 NWQETKSALKSLGVERIVAMTTKFSRPFYEYQFKLDNDQHKVALVFGSETDGLPEEVRAD 128 Query: 248 --ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A L M ++LN++N+ + LY Sbjct: 129 IGANHWLRLPMLPDSRSLNLANSVGICLYEVWRQL 163 >gi|270265196|ref|ZP_06193458.1| hypothetical protein SOD_l00460 [Serratia odorifera 4Rx13] gi|270040830|gb|EFA13932.1| hypothetical protein SOD_l00460 [Serratia odorifera 4Rx13] Length = 157 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + P + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPMGFPWDDKRLRRAGLDY--HEFANIR 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + A + L++ L+ G E +GL + E A Sbjct: 59 RHADYAAFIASENPQRLFALTTKGTPAHSAVSYQPGDYLLFGPETRGLPAEILEALPAQQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA AV +Y Sbjct: 119 KIRIPMQAQSRSMNLSNAVAVVVYEAWRQL 148 >gi|169836038|ref|ZP_02869226.1| 23S rRNA methyltransferase [candidate division TM7 single-cell isolate TM7a] Length = 256 Score = 83.3 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 77/236 (32%), Gaps = 9/236 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + G ++ + +++ ++ D + + + Sbjct: 24 YRDENSIFKAEGEKFLNE-----NINFNKIIVKESKFEYFDERYGISEHDNLTILKDNLF 78 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 D++ + +++LD V DP N G I+R+ +A + Sbjct: 79 DEVS----TQENSQGIMFLYSKNLNTIEDVKGDVVILDDVQDPGNAGTIIRTMIAANFQN 134 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I TK + ++ + + I + + + E Sbjct: 135 LILTKGSVDVYNPKTVRATMSGIFKLNIIYETPENIVKFLNDKNYLKIATALHEDSISYE 194 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + A I G EG G+ E + A + + G I++LNVS A + LY + Sbjct: 195 KIELRENNAFIFGHEGGGVSEYLIENSDIKAIIPIYGNIESLNVSVATGIFLYKMR 250 >gi|125562106|gb|EAZ07554.1| hypothetical protein OsI_29808 [Oryza sativa Indica Group] Length = 298 Score = 83.3 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 35/133 (26%), Gaps = 7/133 (5%) Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 + D ++ + S+ A N + + + Sbjct: 141 MVAWDLPSDPGKHWIDCEDMCCVSSWAASCRGKIHDSWNEFRDYFMKQDGEKRLLAFTKR 200 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS------MAHLHMPGI-IKALNVSNA 268 L+ G+E KGL E + + M ++ LN+S + Sbjct: 201 GTSIHSDFSYKPGDWLVFGSETKGLPQSALEDCSREGLGGGTIRIPMVETYVRCLNLSVS 260 Query: 269 AAVALYITQNHFA 281 VALY Sbjct: 261 VGVALYEAARQLN 273 >gi|293977966|ref|YP_003543396.1| rRNA methylase [Candidatus Sulcia muelleri DMIN] gi|292667897|gb|ADE35532.1| rRNA methylase, putative, group 3 [Candidatus Sulcia muelleri DMIN] Length = 239 Score = 83.3 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 6/233 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKE 108 +YG++ + A+ + + K +L P+ + G Sbjct: 6 IYGINPLYEAIKYKKKIYKIFIIKKFINFKLKKIIKFSYLKKIPIFERFHFKKNNQ-GVF 64 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 A+ + + P + LL++LD + D N G+I+R++ D II + Sbjct: 65 AIIDPIEFYKIEDIIPNIYYNGKIPLLLILDSITDVRNFGSIVRTSACTGVDAIIISN-- 122 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + ++ K++SG L +P + N+ ++ + ++G Q I ++ + + Sbjct: 123 NNIVNSDSIKTSSGGLFKVPICKEKNIIKIIKILKNYGIQIIAVTEKTDYLCYNINYRNP 182 Query: 229 IALILGAEGKGLRPKTQETATSMAHLH-MPGIIKALNVSNAAAVALYITQNHF 280 A ILG+E KG+ + L + + +LNVS A LY Sbjct: 183 TAFILGSEEKGISINYLSICNNRVKLPLIKNSLTSLNVSVACGAILYEAIRQR 235 >gi|257413426|ref|ZP_04743012.2| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82] gi|257203592|gb|EEV01877.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82] Length = 171 Score = 83.3 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 1/99 (1%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G + + + G + ++ + + ++ G E G+ Sbjct: 54 GMDYWSELDVTTYVNWDDFCEKNPGAKIYMATTKGRHVYTEVSYEPDCYIMFGKESAGIP 113 Query: 242 PKTQETA-TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + + M G ++LN+SN+ A+ LY Sbjct: 114 EEILKANPDTCVRIPMIGETRSLNLSNSVAIVLYEALRQ 152 >gi|224476913|ref|YP_002634519.1| putative rRNA methylase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421520|emb|CAL28334.1| putative rRNA methylase [Staphylococcus carnosus subsp. carnosus TM300] Length = 156 Score = 83.3 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 51/151 (33%), Gaps = 1/151 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ +L ++ EH+ Sbjct: 1 MTNHVVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250 N+ + + S + + + + G E GL +E + Sbjct: 61 YENIEQFFDQTDGHYYLITKFGSTTFTDFDYSNPEEDHYFVFGRETTGLPDWVKEKYHDT 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M I++LN+SN AA+ +Y Sbjct: 121 ALRIPMNDHIRSLNLSNTAAILVYEALRQQN 151 >gi|125527657|gb|EAY75771.1| hypothetical protein OsI_03687 [Oryza sativa Indica Group] Length = 517 Score = 83.3 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 73/346 (21%), Positives = 125/346 (36%), Gaps = 75/346 (21%) Query: 6 KKKSEKIFSLKDSHYAKLRRNH--------------RDYKKMQSFNQKSRHTSQP--ENL 49 + K +KD++ + R+ + ++ R T + E+ Sbjct: 157 SIDNPKWGRIKDNYRRMVPRDRGSRGERFRGERFDKPEVRQWSRQENWGRKTWKEAGEST 216 Query: 50 F-------LYGVHTVSAALNNPSRKIFQLLATKNAL-------------ARLDWDANLPH 89 +YGV V AAL R+ + L + Sbjct: 217 VPKMVGQGVYGVGPVLAALMAERREFYALYIQEGMDLSVSNKKKKDKKGIEKVLQLAERI 276 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVN 142 V ++ +V HQGL L+ +PL + + + LD V Sbjct: 277 GLKVIEASKHDLNMVVD-NRPHQGLVLDASPLEMVNTKELEPVRVDDGKAPVWIALDEVM 335 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+GAI+RSA F +G++ + S S V++K+++G+LE I + N+ L Sbjct: 336 DPQNLGAIIRSAYFFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSS 395 Query: 203 HSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---- 257 G++ G + PL + + + L+LG+EG GLRP + + T + + Sbjct: 396 AENGWRVLGGTVASKAIPLSEVVPGEPTILVLGSEGTGLRPLVERSCTHLVRIPGNVDGS 455 Query: 258 ------------------GI--------IKALNVSNAAAVALYITQ 277 G +++LNVS AA V LY Sbjct: 456 FVGADTDTDGGEEGDNYSGNQDMKSFLAVESLNVSVAAGVLLYHLA 501 >gi|149181311|ref|ZP_01859809.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1] gi|148851036|gb|EDL65188.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1] Length = 160 Score = 83.3 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R+ A + ++ +L ++ + + Sbjct: 1 MGIHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLRRAGLDYWQFVEINY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQETA-T 249 ++ + +K F + ++ +K I G E GL + E Sbjct: 61 YDSIEEFFEKNEGGEFYYLTKYGENVHSGYDYSNKEKDYYFIFGRETTGLPDEVIENNKD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN AA+ +Y Sbjct: 121 RCLRIPMNNNARSLNLSNTAAILVYEALRQ 150 >gi|257469466|ref|ZP_05633558.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] Length = 152 Score = 83.3 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + ++ +K+ ++ G E +G+ Sbjct: 50 YWHLVDLKVWESYEDFINGNPDAVIYYATTKTKQKYTDIKFGKNDFVMFGPESRGIPEDI 109 Query: 245 QET-ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M + ++LN+SN+AA+ LY Sbjct: 110 LNRNADHCITIPMIDMGRSLNLSNSAAIILYEALRQ 145 >gi|116072328|ref|ZP_01469595.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. BL107] gi|116064850|gb|EAU70609.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. BL107] Length = 279 Score = 83.3 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 79/270 (29%), Gaps = 17/270 (6%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R + K+++ + + L L G H + L + + D Sbjct: 8 SRRNPLVKRLRMLSSRP-GRDAEGLLLLEGTHLLQELLWIGGQPTELIATEAWFDRHADL 66 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 L + V + + + + ++ + + +VLD + D Sbjct: 67 IQALDASVVWRRVTEEVLGAALSTVTP---DGVACLCPITLLPEPPKTCDFWLVLDRIQD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPS-------------ESAVLAKSASGALEHIPYI 190 P N+G++LRSA+A + P + Sbjct: 124 PGNLGSLLRSALAADVQSVWMGSGVDPLGGKALRASAGALLQLPHRRFGPEQQQAIDDLD 183 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + L A P + AL+LG EG GL P+ Q T Sbjct: 184 QALRLLMAQGIQVVATLVPDASGPLRPIPYWELDWTQPTALVLGTEGAGLHPRLQACCTH 243 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L +++LNV+ AA L + Sbjct: 244 AVTLPHSSRVESLNVAAAAVPLLLERRRAR 273 >gi|323451450|gb|EGB07327.1| hypothetical protein AURANDRAFT_60146 [Aureococcus anophagefferens] Length = 270 Score = 83.3 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 90/278 (32%), Gaps = 25/278 (8%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 + + ++ D+ K+ + + Q +FL G V AL + L+A Sbjct: 3 RSAAPRRIDSTKNDFVKLCKTLHRRKGREQTNLVFLEGQRLVGDALAAGAAPRTVLVADG 62 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 L D V P + + +A+ P+++ + Sbjct: 63 VDADGLPGD--------VVRAPLKVVAACCDTSTPQGVVAVVEKPVVAVPPSPT----FV 110 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + LD V+DP N+GA++R+A A CD + + + A+ + Sbjct: 111 LALDGVSDPGNVGALIRTAAAAGCDAVAVVGAACADPWSPKSLRAAMGATFRVPVVEFRD 170 Query: 196 TDALQKMHSWGFQTI------GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 L+ ++ + + +GAE G+ + E Sbjct: 171 DGWAGAAPRLRGDWDLSVRAADLAPGAEAYDAAPWADGGACVAVGAEV-GVSRELAELLD 229 Query: 250 ------SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 S ++ M +++LN + A + L + A Sbjct: 230 GDDAGFSRVYIPMHADVESLNAAVAGSAILLEARRQRA 267 >gi|188577836|ref|YP_001914765.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522288|gb|ACD60233.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 240 Score = 83.3 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 98/236 (41%), Gaps = 10/236 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 LYG++ V A + + +L ++ + + + + V + K+ Sbjct: 3 LYGINAVQAVFKARPQALRKLYLSEARIPQFKALLAWCVSQRIGYRVVEEADLSKLAA-S 61 Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 A H+G+ E + L + L + LD V +PHN GA+LRS+ F G++ Sbjct: 62 AHHEGIVAEVLRVAPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAMLRSSAHFGVAGLL 121 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + S A+ A G E +P +++ + A+ ++ GF D + + Sbjct: 122 LPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDVFAA 181 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277 ++ ++GAE +G+ + G +++LNV++A AV A + + Sbjct: 182 ALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 237 >gi|58583011|ref|YP_202027.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427605|gb|AAW76642.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 353 Score = 83.3 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 98/236 (41%), Gaps = 10/236 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 LYG++ V A + + +L ++ + + + + V + K+ Sbjct: 116 LYGINAVQAVFKARPQALRKLYLSEARIPQFKALLAWCVSQRIGYRVVEEADLSKLAA-S 174 Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 A H+G+ E + L + L + LD V +PHN GA+LRS+ F G++ Sbjct: 175 AHHEGIVAEVLRVAPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAMLRSSAHFGVAGLL 234 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + S A+ A G E +P +++ + A+ ++ GF D + + Sbjct: 235 LPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDVFAA 294 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277 ++ ++GAE +G+ + G +++LNV++A AV A + + Sbjct: 295 ALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 350 >gi|84624847|ref|YP_452219.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368787|dbj|BAE69945.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 303 Score = 83.3 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 98/236 (41%), Gaps = 10/236 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 LYG++ V A + + +L ++ + + + + V + K+ Sbjct: 66 LYGINAVQAVFKARPQALRKLYLSEARIPQFKALLAWCVSQRIGYRVVEEADLSKLAA-S 124 Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 A H+G+ E + L + L + LD V +PHN GA+LRS+ F G++ Sbjct: 125 AHHEGIVAEVLRVAPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAMLRSSAHFGVAGLL 184 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + S A+ A G E +P +++ + A+ ++ GF D + + Sbjct: 185 LPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDVFAA 244 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277 ++ ++GAE +G+ + G +++LNV++A AV A + + Sbjct: 245 ALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 300 >gi|119504920|ref|ZP_01626997.1| putative RNA-methyltransferase [marine gamma proteobacterium HTCC2080] gi|119459206|gb|EAW40304.1| putative RNA-methyltransferase [marine gamma proteobacterium HTCC2080] Length = 158 Score = 83.3 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 4/153 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + L +VL P N G+I+R + + L ++ H Sbjct: 1 MSAFPLHIVLYEPEIPGNTGSIIRLCANTGAALHVIKPLGFEMDDKRLRRAGLDY--HEF 58 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + A + + + + + + ++ AL+ G+E KGL T Sbjct: 59 ASVMQWESLAHYREQNSDRRLVAVETCGVARHSNFSFSNSDALLFGSETKGLPEAILVTL 118 Query: 249 --TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L M ++LN++NA +V +Y Sbjct: 119 SRDHIVKLPMLPNSRSLNLANAVSVVVYEAWRQ 151 >gi|320451508|ref|YP_004203604.1| RNA methyltransferase, TrmH family, group 2 [Thermus scotoductus SA-01] gi|320151677|gb|ADW23055.1| RNA methyltransferase, TrmH family, group 2 [Thermus scotoductus SA-01] Length = 149 Score = 83.3 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 48/148 (32%), Gaps = 2/148 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I R+A A + L ++ H+ Sbjct: 1 MLHLVLFQPEIPQNTGNIARTAAALGWPLHLIRPLGFRLSDPRLKRAGLDYWPHVDLRLH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 Q + + L L+ G E +GL P+ Sbjct: 61 DTWEAFWQSLPPGARVWAFS-ARGDTCLYGVSFQPGDYLLFGPETRGLPPEVLTLFPG-V 118 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ MPG++++LN++ A VA Y Sbjct: 119 YIPMPGLVRSLNLAVAVGVAAYEAYRQL 146 >gi|311267819|ref|XP_003131753.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Sus scrofa] Length = 361 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 23/223 (10%) Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQ 133 PV + +D + + VHQG+ +E +PL Q Sbjct: 94 ELLRVAEARDIPVLRPRRRKLDVLCRYQ-VHQGVCMEVSPLRPQPWAEAGESRPGDDPQQ 152 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI- 192 L +VL+ + DP N+GA+LRSA + +IT+++ S + V++K+++GA+E + Sbjct: 153 LWLVLEGLQDPRNLGAVLRSAHFLGVEKVITSRKNSCPLTPVVSKASAGAMEVMDVFSTD 212 Query: 193 ----------SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + G + S + + L+LG EG GL Sbjct: 213 DLAGFLQAKARQGWLVAGTVGCPGPEISPSSEVPITSCLDFLWDQPTLLVLGNEGSGLSR 272 Query: 243 KTQETATSMAHL-H---MPGIIKALNVSNAAAVALYITQNHFA 281 + Q + + + +P +++LNVS AA + L+ + Sbjct: 273 EVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICSQRK 315 >gi|125600959|gb|EAZ40535.1| hypothetical protein OsJ_24991 [Oryza sativa Japonica Group] Length = 263 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 18/184 (9%), Positives = 51/184 (27%), Gaps = 6/184 (3%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V+ + ++ + + + ++ S L+V + + A Sbjct: 33 VELTSREVLEVL------EPHIMEARRERIRRAVENRSYSVCLVVEGLSDFGNVSAAFRS 86 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 + + + + S + S Sbjct: 87 ADALGVQSVHVISCDNNKRYRDNRHVSMGAEKWLDIELWSSTAECFDALKKRGYRIATTY 146 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + + A+++G E G+ + + + M G++ + NVS AA + Sbjct: 147 LGNDSVCVYDMDWSQPTAIVVGNELMGISDDALKLSDLHCSVPMKGMVDSFNVSVAAGIL 206 Query: 273 LYIT 276 ++ Sbjct: 207 MHHA 210 >gi|116690871|ref|YP_836494.1| RNA methyltransferase [Burkholderia cenocepacia HI2424] gi|116648960|gb|ABK09601.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia cenocepacia HI2424] Length = 172 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 46/154 (29%), Gaps = 2/154 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + +VL P N G ++R + P + A + ++ E+ Sbjct: 12 QPNRNMFNVVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYA 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + + ++ + G+E +GL + E Sbjct: 72 QMRVHRDWDAFVAAETPDPARMFAFTTRGSGRFHDHAFLSGDWFVFGSETRGLPAELLER 131 Query: 248 --ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 132 FPNEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQ 165 >gi|294139011|ref|YP_003554989.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12] gi|293325480|dbj|BAJ00211.1| RNA methyltransferase, TrmH family, group 2 [Shewanella violacea DSS12] Length = 154 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R C + E L ++ + R Sbjct: 1 MFHIALYEPEIAPNTGNIIRLCANNGCQLHLIEPLGFDLEEKKLRRAGLDYADLTCVTRY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + L+ M +P + L+ G E +GL + E+ + Sbjct: 61 KDFPSFLEAMDGKRIMACTTKG--SRPHSELSFKKDDVLLFGPETRGLPMEIIESLPTSQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G+ ++LN+SNA A+ Y Sbjct: 119 RLKIPMAGMSRSLNLSNAVAIISYEAWRQI 148 >gi|237821623|ref|ZP_04597468.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CCRI 1974M2] Length = 135 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + L++G EG+G+ P E+A + H+ M G ++LNV+ AA + ++ Sbjct: 85 ENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 134 >gi|329890251|ref|ZP_08268594.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC 11568] gi|328845552|gb|EGF95116.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC 11568] Length = 151 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 2/147 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + PHN+GA +R + F + + + + ++A R ++ Sbjct: 3 LALFQPDIPHNVGACIRLSACFDVELHVIQPTSFNFDDRAMKRAALDYGPLSHMTRHADW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + +PL + L+ G E G A + ++ Sbjct: 63 DAFQRDRAPGRLVLFTTRA--AEPLTDFVFQPDDVLLFGKESAGSPDYVHAAADARIYIP 120 Query: 256 MPGIIKALNVSNAAAVALYITQNHFAK 282 + ++LN+S +A + L+ + Sbjct: 121 IRPEARSLNLSVSAGIGLHEALRQMNE 147 >gi|326503224|dbj|BAJ99237.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 252 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 9/158 (5%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G+I R+ A + + + L ++ ++ Sbjct: 70 MLHVVLVSPMIPGNTGSIARTCAASAVGLHLVGPLGFHVDDTKLKRAGLDYWPYVVVKIH 129 Query: 193 SNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + + Q + L+ G+E KGL E + Sbjct: 130 DSWGEFRDYFMKQDGQKRLLAFTKRGTHVHSDFSYKPGDWLVFGSETKGLPESALEDCSG 189 Query: 251 ------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 + M ++ LN+S + +ALY Sbjct: 190 EAVGGGTIRIPMVETYVRCLNLSVSVGIALYEAARQLN 227 >gi|170734196|ref|YP_001766143.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3] gi|254247124|ref|ZP_04940445.1| RNA methyltransferase, TrmH family [Burkholderia cenocepacia PC184] gi|124871900|gb|EAY63616.1| RNA methyltransferase, TrmH family [Burkholderia cenocepacia PC184] gi|169817438|gb|ACA92021.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia cenocepacia MC0-3] Length = 156 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A + ++ E+ Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + ++ + G+E +GL + E Sbjct: 61 RDWDAFVAAETPDPARMFAFTTRGSGRFHDHAFLPGDWFVFGSETRGLPAELLERFPNEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149 >gi|298505309|gb|ADI84032.1| RNA methyltransferase, TrmH family, group 2, putative [Geobacter sulfurreducens KN400] Length = 164 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + +VL P N G I R A + K ++ L ++ + Sbjct: 1 MTGHQPFHIVLVEPEIPPNTGNIARLCGATGTVLHLVGKLGFSTDDRYLKRAGLDYWSEV 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +L Q F + + ++ ++ G E GL + Sbjct: 61 DIRYWESLDQLRQAWPDARFFYTSKKA--ARCYVDAGFHEGDFIVFGKETVGLPEDLLQA 118 Query: 248 AT-SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + G +++LN+S AA + LY Sbjct: 119 NEEHCVRIPIFGKVRSLNLSTAAGIVLYEALRQ 151 >gi|148683794|gb|EDL15741.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus musculus] Length = 358 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 23/221 (10%) Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQ 133 PV Q +D + G + VHQG+ +E +PL D Q Sbjct: 123 ELLRVAEARGIPVLRPRRQKLDALCGYQ-VHQGVCMEVSPLRPRPCDEAADTSSGDDPQQ 181 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL+ + DP N+GA++RSA D +IT++R S + V++K+++GA+E + Sbjct: 182 LWLVLEGLQDPRNLGAVMRSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATP 241 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-----------LEQEIKNDKIALILGAEGKGLRP 242 +L LQ G+ +G + + + L+LG+EG GL Sbjct: 242 DLPGFLQAKAQQGWLVVGTVGCPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGSGLSQ 301 Query: 243 KTQETATSMAHL-H---MPGIIKALNVSNAAAVALYITQNH 279 + + + + +P +++LNVS A + L+ + Sbjct: 302 EVFASCQLLLTILPRRHLPPGLESLNVSVATGILLHSICSQ 342 >gi|89337263|ref|NP_663408.2| rRNA methyltransferase 1, mitochondrial precursor [Mus musculus] gi|123796682|sp|Q99J25|MRM1_MOUSE RecName: Full=rRNA methyltransferase 1, mitochondrial; AltName: Full=Mitochondrial large ribosomal RNA ribose methylase; Flags: Precursor gi|74208629|dbj|BAE37571.1| unnamed protein product [Mus musculus] gi|74208738|dbj|BAE37607.1| unnamed protein product [Mus musculus] gi|112180309|gb|AAH05625.2| Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus musculus] gi|151358036|emb|CAI35310.2| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus musculus] Length = 320 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 23/221 (10%) Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQ 133 PV Q +D + G + VHQG+ +E +PL D Q Sbjct: 85 ELLRVAEARGIPVLRPRRQKLDALCGYQ-VHQGVCMEVSPLRPRPCDEAADTSSGDDPQQ 143 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL+ + DP N+GA++RSA D +IT++R S + V++K+++GA+E + Sbjct: 144 LWLVLEGLQDPRNLGAVMRSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATP 203 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-----------LEQEIKNDKIALILGAEGKGLRP 242 +L LQ G+ +G + + + L+LG+EG GL Sbjct: 204 DLPGFLQAKAQQGWLVVGTVGCPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGSGLSQ 263 Query: 243 KTQETATSMAHL-H---MPGIIKALNVSNAAAVALYITQNH 279 + + + + +P +++LNVS A + L+ + Sbjct: 264 EVFASCQLLLTILPRRHLPPGLESLNVSVATGILLHSICSQ 304 >gi|153008950|ref|YP_001370165.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188] gi|151560838|gb|ABS14336.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC 49188] Length = 180 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 50/153 (32%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + +L + L + P N G ILR A + L ++ LE Sbjct: 18 YPHHMELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRSLKRAGMDYLEQA 77 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 R ++ + + LS+ + P + L+ G E G+ + Sbjct: 78 TLTRHADWHHFEDWRLQAKRRIVLLSTKAAIPYTDYRFQENDILLFGRESSGVPDNVHNS 137 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + + M ++LN++ + A+ Sbjct: 138 ADARLLIPMMPGARSLNLAVSVAMTAGEALRQR 170 >gi|134297042|ref|YP_001120777.1| RNA methyltransferase [Burkholderia vietnamiensis G4] gi|134140199|gb|ABO55942.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia vietnamiensis G4] Length = 156 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A + ++ E+ Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + ++ + G+E +GL + E Sbjct: 61 RDWDAFVAAESPDPTRMFAFTTRGSGRFHDHAFVPGDWFVFGSETRGLPAELLERFPGEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149 >gi|296160421|ref|ZP_06843238.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. Ch1-1] gi|295889402|gb|EFG69203.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. Ch1-1] Length = 156 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 48/149 (32%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A + ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDARMRRAGLDYHEYAQMNVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 ++ + K + ++ + + GAE +GL + + Sbjct: 61 ADWPAFIAKESPDPARMFAFTTRGSGRFHERAFQSGDWFVFGAETRGLPDLVLDQFASEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149 >gi|220929686|ref|YP_002506595.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulolyticum H10] gi|220000014|gb|ACL76615.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulolyticum H10] Length = 164 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 1/98 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 K + G ++ + D ++ G E GL + Sbjct: 52 YWNEADVRYYNNLDEFKKKNVGKTFYYSTTKAVNNYCNVNFEDDCFIVFGKETAGLPEEL 111 Query: 245 QE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M I++LN+SN+AA+ LY Sbjct: 112 LKGNKEYCIRIPMKNGIRSLNLSNSAAIVLYEALRQQN 149 >gi|325518166|gb|EGC97941.1| RNA methyltransferase [Burkholderia sp. TJI49] Length = 156 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 44/149 (29%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A + ++ E+ Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMQVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + ++ + G+E +GL E Sbjct: 61 RDWDAFVAAESPDPARMFAFTTRGSGRFHDHAFLPGDWFVFGSETRGLSADVLERFANEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149 >gi|290579924|ref|YP_003484316.1| putative rRNA methylase [Streptococcus mutans NN2025] gi|254996823|dbj|BAH87424.1| putative rRNA methylase [Streptococcus mutans NN2025] Length = 246 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 100/265 (37%), Gaps = 31/265 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + I K K R+ + + G H + A Sbjct: 1 MTIITSKANSLIKKTKKLLQKKYRQY---------------------SYLIEGWHLFAEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I + + +R+ N V V + + + +A P Sbjct: 40 -QANNADIINIFVLECYASRVSEFPN------VVLVSEDILKDLSASKTPQGIVAEIAFP 92 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 LL + V DP N+G I+R+A A + D + +++ + ++ +S Sbjct: 93 KQVIPQQFFGKYLLL---EDVQDPGNVGTIIRTADAAAFDAVFVSEKTADIYNSKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R++ L+ ++ SD + K + ALI+G EG+G+ Sbjct: 150 QGSHFHLPIYRVNLLSLVNDLKNADVTTIATTLSDHSCDYKSLKKVENFALIMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNV 265 + E A + H+ MPG ++LNV Sbjct: 210 TSEMAEQADVLTHITMPGRAESLNV 234 >gi|284923642|emb|CBG36739.1| putative RNA-methyltransferase [Escherichia coli 042] Length = 157 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + L++ D L+ G E +GL + A Sbjct: 59 RHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLVFGPETRGLPASILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|239047833|ref|NP_001141631.2| hypothetical protein LOC100273751 [Zea mays] gi|238908839|gb|ACF86752.2| unknown [Zea mays] Length = 549 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 65/275 (23%), Positives = 109/275 (39%), Gaps = 49/275 (17%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-------------PFPVKTVP 97 +YGV V AAL R+ + L ++ + V P Sbjct: 260 VYGVGPVLAALMARRREFYALYIQESMDLSGNNKKRKDKKAVEKVLRMAEEIGLNVIETP 319 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAI 150 ++ +V HQG+ L+ +PL + + + + LD + DP N+GAI Sbjct: 320 KHDLNMVVD-NRPHQGVVLDASPLEMVNIKELDPVRVEGGKAPVWIALDEIMDPQNLGAI 378 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT- 209 +RSA F G++ + S S V++K+++G+LE I + N+ L G++ Sbjct: 379 IRSAYYFGAQGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVL 438 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP------------ 257 G ++ PL Q L++G+EG GLRP + + T + + Sbjct: 439 GGTIANKAVPLSQVELGVPTILVMGSEGTGLRPLVERSCTHLVRIPGNVDVSVEGADADA 498 Query: 258 ---GI------------IKALNVSNAAAVALYITQ 277 G +++LNVS AA V LY Sbjct: 499 GEEGDSSSNRDLRSFLAVESLNVSVAAGVLLYHLA 533 >gi|308235806|ref|ZP_07666543.1| rRNA methylase [Gardnerella vaginalis ATCC 14018] gi|311114467|ref|YP_003985688.1| TrmH family rRNA methyltransferase [Gardnerella vaginalis ATCC 14019] gi|310945961|gb|ADP38665.1| TrmH family rRNA methyltransferase [Gardnerella vaginalis ATCC 14019] Length = 321 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 44/298 (14%), Positives = 98/298 (32%), Gaps = 55/298 (18%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 K++ + + +++ + G +V A+ + I + ++A+ D N Sbjct: 14 RVKRICAIS-RAKSRV-DGRFLVEGPQSVREAVRYAHKSILDIYVLQDAVNSDYIDVNSF 71 Query: 89 HPFP-----------VKTVPPQTIDKIVG--------KEAVHQGLALETAPLLSPTLD-- 127 + + +++ + A S LD Sbjct: 72 KNLKNGILQNGSLETISKIVDESLKNQCYVHPATAEVMHKISTDCQGIVAVCDSTILDKE 131 Query: 128 -----------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 + L+ V DP N GAI+R A C ++ Sbjct: 132 FIKEFNSIGVESKYKSGFAYDPILIAACWQVRDPGNAGAIIRVADVAGCSAVVFVDDCVN 191 Query: 171 SESAVLAKSASGALEHIP--YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 ++ L +S +G+L H+P + + D + + +++KKP Sbjct: 192 RFNSKLVRSTAGSLFHLPVVTMSEDDWFDWTKSLKIRVIAADIYGTENKKPKSFANLLKP 251 Query: 229 I-------------ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + A++ G E +GL + ++ + + G +++N++ +AAV L Sbjct: 252 LSDDLNKGYNEGSNAILFGNEARGLPEEILNRVDEISVIPIYGKAESMNLATSAAVML 309 >gi|314934019|ref|ZP_07841384.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus caprae C87] gi|313654169|gb|EFS17926.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus caprae C87] Length = 156 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 1/149 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + ++ +L ++ EH+ Sbjct: 1 MTNHIVLFQPEIPANTGNIARTCAGTFTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 ++ + + + + + I G E GL +E A + Sbjct: 61 HESIEEFFDSTEGNYYLLTKFGKQTYSDFDFTNTIENHYFIFGRETTGLPDWVKEKYADT 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN AA+ +Y Sbjct: 121 ALRIPMSDKIRSLNLSNTAALLIYEALRQ 149 >gi|149908629|ref|ZP_01897291.1| putative tRNA/rRNA methyltransferase [Moritella sp. PE36] gi|149808463|gb|EDM68400.1| putative tRNA/rRNA methyltransferase [Moritella sp. PE36] Length = 154 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L + L P N G I+R + + + ++ H Sbjct: 1 MLQIALFEPEIPPNTGNIIRLCANSGFKLHLIEPLGFEWDDKRVKRAGLDY--HEFADVK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + ++ K + L+ G E +GL P+ +T Sbjct: 59 RHANYQAFLDCVGDARIFACTTKGTKYHHEAQYQAGDVLLFGPETRGLPPEVLDTLPQEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y + Sbjct: 119 KVRIPMLPESRSMNLSNAVSVFIYESWRQL 148 >gi|221106776|ref|XP_002159774.1| PREDICTED: similar to rRNA methyltransferase 1, mitochondrial, partial [Hydra magnipapillata] Length = 227 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 82/250 (32%), Gaps = 53/250 (21%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--------PHPFPVK 94 + L+G+ AA+ RKIF++ L + Sbjct: 7 RREH----LFGIAPCLAAILAGRRKIFKVYLNDKLEEEEPRRKELVQLVAEANERNIKLV 62 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 +D++ G DP N+GAI+RSA Sbjct: 63 YKSRPILDRLCGGRPHQ-------------------------------DPMNLGAIIRSA 91 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-----LQKMHSWGFQT 209 F D II ++ S +A ++K +SGA+E ++ + G T Sbjct: 92 TYFGVDKIIVNEKNSCGLTATVSKVSSGAMEWASVYSTRDMQRLLKDLLNYDWNLIGTVT 151 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH-----MPGIIKALN 264 + + + L++G EG G+ P T + + +P + +LN Sbjct: 152 KDYTQSKVHSCHDVQLSKRNVLVIGNEGFGMNPLITSICTKLVTIPSFNDRLPEGLDSLN 211 Query: 265 VSNAAAVALY 274 VS A + L+ Sbjct: 212 VSVATGILLH 221 >gi|212704886|ref|ZP_03313014.1| hypothetical protein DESPIG_02953 [Desulfovibrio piger ATCC 29098] gi|212671728|gb|EEB32211.1| hypothetical protein DESPIG_02953 [Desulfovibrio piger ATCC 29098] Length = 261 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 89/249 (35%), Gaps = 22/249 (8%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEA 109 G+ V L ++I + K R D V +D++ + A Sbjct: 12 GMKPVLELLRTDPQRIDLVFCKKGLRTRDAQDVQQLCRQSGVRFSLVDQAALDRLCREAA 71 Query: 110 ----------VHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRS 153 HQG+ L L++ LD V DP N+G + R+ Sbjct: 72 QQNGNEAAPLNHQGVVARLTATDFRDLADVLQAAAEAPLPLVVALDQVQDPGNVGTLCRT 131 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A G+I + S ++A+GALE +P R++NL AL + GF G Sbjct: 132 LYALGGAGVILPRHNSAYLGPAAHRAAAGALERLPVARVTNLAHALDEAEEAGFSIYGAG 191 Query: 214 SDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 E L+LG E KGLRP + M + + +LNV+ A A+ Sbjct: 192 CGPDAADAFEHAMQLPAVLVLGNEDKGLRPGVAKRCGRMLRIPLARKFDSLNVAQAGAIL 251 Query: 273 --LYITQNH 279 L + Sbjct: 252 LGLAAMRRQ 260 >gi|307128744|ref|YP_003880774.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri CARI] gi|306483206|gb|ADM90076.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri CARI] Length = 246 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 95/245 (38%), Gaps = 10/245 (4%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + L +YG++ + A+ + L + + K + I+ Sbjct: 2 NKKRLIIYGINPLYEAIKYKKKIYKIFLIKNLSKKNSKLKKIIEFSKKKKIKIIEKINFK 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAF 157 + HQG+ P+ ++ + + LL++LD + D N G+++R++ Sbjct: 62 KLIKKNHQGVFAFINPIKFSKIEYIIPNIFFSGKIPLLLILDSITDVRNFGSLVRTSACT 121 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D II T ++ K++SG L +P + +N+ ++ + + G Q I ++ + Sbjct: 122 GVDAIIITN--YNIVNSDSIKTSSGGLFKVPICKENNIIKIIKFLKNSGIQVIAVTEKTN 179 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH-MPGIIKALNVSNAAAVALYIT 276 + A ILG E KG+ + L + + +LNVS A LY Sbjct: 180 SICYNINYRNPTAFILGNEEKGISKNYLSICNNTVKLPLLKNSLSSLNVSVACGAILYEA 239 Query: 277 QNHFA 281 + Sbjct: 240 IRQRS 244 >gi|307728345|ref|YP_003905569.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. CCGE1003] gi|307582880|gb|ADN56278.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. CCGE1003] Length = 156 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P E A L ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLEDAKLRRAGLDYHEYAQMNVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250 +N + K + ++ + + GAE +GL + T Sbjct: 61 ANWAAFIAKESPDASRMFAFTTRGSGRFHEHAFKPGDWFVFGAETRGLPDAVLDQFTGEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN A+ ++ Sbjct: 121 RVRLPMRPGNRSLNLSNTVAIVVFEAWRQ 149 >gi|166713190|ref|ZP_02244397.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 303 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 10/236 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 LYG++ V A + + +L ++ + + + + V + K+ Sbjct: 66 LYGINAVQAVFKARPQALRKLYLSEARIPQFKALLAWCVSQRIGYRVVEEADLSKLAA-S 124 Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 A H+G+ E + L + L + LD V +PHN GA+LRS+ F G++ Sbjct: 125 AHHEGIVAEVLRVAPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAMLRSSAHFGVAGLL 184 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + S A+ A G E +P +++ A+ ++ GF D + + Sbjct: 185 LPAGSTLGLSGAAARVAEGGAEAVPLVQLPGTATAMAQLRQAGFAIAATLVDGGQDVFAA 244 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277 ++ ++GAE +G+ + G +++LNV++A AV A + + Sbjct: 245 ALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 300 >gi|194336255|ref|YP_002018049.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme BU-1] gi|194308732|gb|ACF43432.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme BU-1] Length = 180 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 68/152 (44%), Gaps = 2/152 (1%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 L+++L ++ N+G++ RSA A + II + + +AK+A GA + Sbjct: 21 CQSPKHPLVLMLHNIRSMWNVGSMFRSADAARIEKIILSGYTATPPRKEIAKTALGAQDT 80 Query: 187 IPYIRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + ++ +A+ M + ++ S+ + I L++G E GL + Sbjct: 81 VVWEYHADPLEAVCSMKREGVRICGLEITEGSRPYTAVNAGDFPICLVVGNEVDGLENEI 140 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ + + G +LNV+ AA +AL+ Sbjct: 141 LDSCDDVLEIPQYGTKHSLNVAVAAGIALFEL 172 >gi|73966850|ref|XP_852880.1| PREDICTED: similar to Y45F3A.9 [Canis familiaris] Length = 346 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 88/221 (39%), Gaps = 21/221 (9%) Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQ 133 PV Q +D + + VHQG+ +E +PL + Sbjct: 89 ELLREAEARDIPVLRPRRQKLDALCRHQ-VHQGVCMEVSPLKPRPWTEVEEARPGDDPRR 147 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL+ + DP N+GA+LRSA D +IT+ R S + V++K+++GA+E + Sbjct: 148 LWLVLERLQDPRNLGAVLRSAHFLGVDKVITSGRNSCPLTPVVSKASAGAMEVMDVFSTD 207 Query: 194 N---------LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + L + S + + + L+LG EG GL Sbjct: 208 DLAGFLQAKARQGWLVAGTVGCPRPEMSSEIPITSCLEFLWDQPTLLVLGNEGSGLSQAV 267 Query: 245 QETATSMAHL-H---MPGIIKALNVSNAAAVALYITQNHFA 281 Q + + + +P +++LNVS AA + L+ Sbjct: 268 QASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICCQRK 308 >gi|302384793|ref|YP_003820615.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum WM1] gi|302195421|gb|ADL02992.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum WM1] Length = 164 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + G + ++ + L+ G E G+ + Sbjct: 50 YWDKLDVNVYSDYQDFLDRNPGARIYMATTKGLHVYSDVEYDPDCFLMFGKESAGIPEEI 109 Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E + M G I++LN+SN+ ++ LY Sbjct: 110 LLENQDCCVRIPMWGDIRSLNLSNSVSIVLYEALRQ 145 >gi|125571975|gb|EAZ13490.1| hypothetical protein OsJ_03406 [Oryza sativa Japonica Group] Length = 427 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 73/345 (21%), Positives = 121/345 (35%), Gaps = 72/345 (20%) Query: 4 ISKKKSEKIFSLKDSHYAKLRR-----------NHRDYKKMQSFNQKSRHTSQP--ENLF 50 I K +I + R + + ++ R T + E+ Sbjct: 68 IDNPKWGRIKDKYRRMVPRDRGSRGERFRGERFDKPEVRQWSRQENWGRKTWKEAGESTV 127 Query: 51 -------LYGVHTVSAALNNPSRKIFQLLATKNALA-------------RLDWDANLPHP 90 +YGV V AAL R + L + Sbjct: 128 PKMVGQGVYGVGPVLAALMAERRDFYALYIQEGMDFSVSNKKKKDKKGIEKVLQLAERIG 187 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVND 143 V ++ +V HQGL L+ +PL + + + LD V D Sbjct: 188 LKVIEASKHDLNMVVD-NRPHQGLVLDASPLEMVNTKELEPVRVDDGKAPVWIALDEVMD 246 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GAI+RSA F +G++ + S S V++K+++G+LE I + N+ L Sbjct: 247 PQNLGAIIRSAYFFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSA 306 Query: 204 SWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----- 257 G++ G + PL + + + L+LG+EG GLRP + + T + + Sbjct: 307 ENGWRVLGGTVAPKAIPLSEVVPGEPTILVLGSEGTGLRPLVERSCTHLVRIPGNVDGSF 366 Query: 258 -----------------GI--------IKALNVSNAAAVALYITQ 277 G +++LNVS AA V LY Sbjct: 367 VGADTDTDGGEEGDNYSGNQDMKSFLAVESLNVSVAAGVLLYHLA 411 >gi|57899959|dbj|BAD87895.1| putative tRNA/rRNA methyltransferase [Oryza sativa Japonica Group] Length = 517 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 73/345 (21%), Positives = 121/345 (35%), Gaps = 72/345 (20%) Query: 4 ISKKKSEKIFSLKDSHYAKLRR-----------NHRDYKKMQSFNQKSRHTSQP--ENLF 50 I K +I + R + + ++ R T + E+ Sbjct: 158 IDNPKWGRIKDKYRRMVPRDRGSRGERFRGERFDKPEVRQWSRQENWGRKTWKEAGESTV 217 Query: 51 -------LYGVHTVSAALNNPSRKIFQLLATKNALA-------------RLDWDANLPHP 90 +YGV V AAL R + L + Sbjct: 218 PKMVGQGVYGVGPVLAALMAERRDFYALYIQEGMDFSVSNKKKKDKKGIEKVLQLAERIG 277 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVND 143 V ++ +V HQGL L+ +PL + + + LD V D Sbjct: 278 LKVIEASKHDLNMVVD-NRPHQGLVLDASPLEMVNTKELEPVRVDDGKAPVWIALDEVMD 336 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GAI+RSA F +G++ + S S V++K+++G+LE I + N+ L Sbjct: 337 PQNLGAIIRSAYFFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSA 396 Query: 204 SWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----- 257 G++ G + PL + + + L+LG+EG GLRP + + T + + Sbjct: 397 ENGWRVLGGTVAPKAIPLSEVVPGEPTILVLGSEGTGLRPLVERSCTHLVRIPGNVDGSF 456 Query: 258 -----------------GI--------IKALNVSNAAAVALYITQ 277 G +++LNVS AA V LY Sbjct: 457 VGADTDTDGGEEGDNYSGNQDMKSFLAVESLNVSVAAGVLLYHLA 501 >gi|307109015|gb|EFN57254.1| hypothetical protein CHLNCDRAFT_21737 [Chlorella variabilis] Length = 201 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 Q A I+G E +G+ + A + A + M G + + N+S AAA+ +Y + Sbjct: 138 QIDWTRPTAFIMGNEKRGVSCEAVALADACAVVPMVGFVDSYNLSVAAALIMYEARRMRE 197 Query: 282 K 282 + Sbjct: 198 Q 198 >gi|87199225|ref|YP_496482.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM 12444] gi|87134906|gb|ABD25648.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM 12444] Length = 151 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 22/59 (37%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E G+ + + + + +++LN++ A A+AL Sbjct: 86 HDFRFRADDVLLFGKESAGVPDEVAQACDERVRIPIRPEVRSLNLAIATALALGEALRQ 144 >gi|313205776|ref|YP_004044953.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM 15868] gi|312445092|gb|ADQ81447.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM 15868] Length = 228 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L V++ V N AI+RS A + ++ ++ + + + + Sbjct: 41 FILPVMEDVYQYRNAAAIVRSVEACAFHKVVALEKDNIFDPNLSVTKGADTWV-EVEKMP 99 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 N + ++ L IAL+ G E +G+ + + A Sbjct: 100 RNKASLEKIKERGYKIVAVSPENNATMLPDYKVEKPIALVFGTEWEGVSDELLDFADETL 159 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G K+ NVS AAA+ +Y + Sbjct: 160 AIPMYGFTKSFNVSVAAAICMYELKQKL 187 >gi|262166702|ref|ZP_06034439.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus VM223] gi|262170375|ref|ZP_06038053.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus MB-451] gi|261891451|gb|EEY37437.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus MB-451] gi|262026418|gb|EEY45086.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus VM223] Length = 158 Score = 82.6 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 4/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193 + L N G I+R + + E + ++ + + + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251 + F+ ++ + + L+ G E +GL + + A Sbjct: 64 AAFVEYLQRERGTFRLFACTTKTTQHHVDAKFQQGDVLMFGPETRGLPAELIASLPAEQR 123 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 IRIPMMPEARSLNLSNAVAIIAFEAWRQ 151 >gi|121535177|ref|ZP_01666993.1| RNA methyltransferase, TrmH family, group 2 [Thermosinus carboxydivorans Nor1] gi|121306286|gb|EAX47212.1| RNA methyltransferase, TrmH family, group 2 [Thermosinus carboxydivorans Nor1] Length = 153 Score = 82.6 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 46/149 (30%), Gaps = 3/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I R A C+ + ++ L ++ + Sbjct: 1 MLHIVLVEPEIPGNTGNIARLCAATCCELHLVKPLGFSTDDRHLKRAGLDYWHLVKVHYH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSM 251 N + + F + + L+ G E GL + + Sbjct: 61 ENFQEVADRYAGHNFYFNTTKAQKRYTD--IRYTAGDVLVFGKETAGLPEELLRANWPNC 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA AV Y Sbjct: 119 IRIPMLEDARSLNLSNAVAVVAYEALRQL 147 >gi|220931942|ref|YP_002508850.1| RNA methyltransferase, TrmH family, group 2 [Halothermothrix orenii H 168] gi|219993252|gb|ACL69855.1| RNA methyltransferase, TrmH family, group 2 [Halothermothrix orenii H 168] Length = 162 Score = 82.6 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 1/98 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + ++ + K + + ++ G E GL Sbjct: 50 YWDKLDIYYYDSLEELMKKYKDSNFYFATTKAPKSYDIVSYQENDFIVFGKETAGLPESL 109 Query: 245 QET-ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + + M ++LN+SN+ A+ LY Sbjct: 110 LKNNIENCIRIPMKDNTRSLNLSNSVAIILYEALRQLN 147 >gi|260579765|ref|ZP_05847622.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734] gi|258602117|gb|EEW15437.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734] Length = 306 Score = 82.6 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 56/310 (18%), Positives = 107/310 (34%), Gaps = 49/310 (15%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 IFS + R D++ + + ++KS + + G V L +P + Sbjct: 3 IFSPIRIDDPRDSRLD-DFRNLNASDKKS----GEQLIIAEGTLVVPRLLASPY-PTRAV 56 Query: 72 LATKNALARLDWDANLP-----HPFPVKTVPPQTIDKIVGKE------------------ 108 + L ++ + + F V V + + ++ G + Sbjct: 57 VGFPGKLRAIEAELSRALSSDDANFSVFEVSREVLKEVAGFDMHRGLVASADRLPVNPVG 116 Query: 109 -----------AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 A A +L+ +A S ++ VL+ V D NIG+I R+A Sbjct: 117 PVGPVSTASTGAPVGTGASAVEAVLNHLEEAADTSGVIAVLEGVGDHENIGSIFRNAAGL 176 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + D ++ + + + G + +P+ R T Q+ + Sbjct: 177 NVDAVLFGAATADPLYRRSVRVSMGHVLRLPWARFPGTTTTWQRDLELLQRRGYEVVALT 236 Query: 218 KPLEQE---------IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + ++ K+A+++GAEG GL A A + M +LNV+ A Sbjct: 237 PAGDTTLREATEAARMRGRKVAVMVGAEGPGLTEHAMRAADVRASIPMARGTDSLNVATA 296 Query: 269 AAVALYITQN 278 AA+A Y Sbjct: 297 AAIAFYEAVR 306 >gi|152974303|ref|YP_001373820.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023055|gb|ABS20825.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cytotoxicus NVH 391-98] Length = 162 Score = 82.6 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 2/148 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + ++ +L ++ EH+ ++ Sbjct: 5 VVLYQPEIPANTGNIARTCAATGAGLHLIRPLGFSTDDKMLKRAGLDYWEHVKITYYDSI 64 Query: 196 TDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAH 253 + +K F + + + + G E GL E Sbjct: 65 EEFYEKNQDGEFFYLTKYGEKAHTAFDYSNPEKNYYFVFGRETNGLPANIIQENFDHCLR 124 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281 + M +++LN+SN AA+ +Y Sbjct: 125 IPMTDKVRSLNLSNTAAILVYEAFRQQN 152 >gi|319898475|ref|YP_004158568.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella clarridgeiae 73] gi|319402439|emb|CBI75980.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella clarridgeiae 73] Length = 271 Score = 82.6 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 99/252 (39%), Gaps = 6/252 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N + ++ +K Q G +SA L++ LL L + Sbjct: 12 NDPRLEAYRNIREKDLVGRQH-QFIAEGKVILSALLHSKEFSAVSLLVVAARLLGIMPIL 70 Query: 86 NLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS---PTLDAVRNSQLLMVLDHV 141 P P+ VP + +D I G L + L L + L+ VL + Sbjct: 71 KETKPTCPIYCVPQKIMDDIAGFHVHRGMLGIGERKKLPSLKEFLQNLPEKALIPVLCGI 130 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 ++ N+GAI R+A AF+ GII K + ++GA ++PY + ++ + Sbjct: 131 SNHDNMGAIFRNAAAFASTGIIVDKTSCDPLYRKSIRVSAGAALNVPYTQGDDIDSIITA 190 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + F LS + + L+ ALI G EG GL + + + M Sbjct: 191 LSNADFHLYALSPSAPRYLKDTKAIKHTALIFGTEGNGLPAHVLQKS-ETLRIPMAYGFD 249 Query: 262 ALNVSNAAAVAL 273 ++NV+ A+ +AL Sbjct: 250 SINVATASGLAL 261 >gi|255505416|ref|ZP_05345925.3| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM 14469] gi|255268327|gb|EET61532.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM 14469] Length = 167 Score = 82.6 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268 ++ + + + L+ G E G+ + ++ + M G ++LN+SNA Sbjct: 79 YMATTKAPQTYTEVHYEPDCYLMFGKESAGIPEEILLAHQETVVRIPMLGETRSLNLSNA 138 Query: 269 AAVALYITQNH 279 A+ LY Sbjct: 139 VAIVLYEALRQ 149 >gi|322835014|ref|YP_004215041.1| RNA methyltransferase, TrmH family, group 2 [Rahnella sp. Y9602] gi|321170215|gb|ADW75914.1| RNA methyltransferase, TrmH family, group 2 [Rahnella sp. Y9602] Length = 157 Score = 82.6 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R C + + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIEPLGFGWDDKRLRRAGLDY--HEFAHIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + L++ D L+ G E +GL + A Sbjct: 59 HHANYDAFLSSENPQRLFALTTKGTPAHSAVSYQDNDFLLFGPETRGLPASILDNLPAQQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMRAESRSMNLSNAVSVVVYEAWRQL 148 >gi|86133500|ref|ZP_01052082.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] gi|85820363|gb|EAQ41510.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] Length = 229 Score = 82.6 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 10/184 (5%) Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V V + ++ + +G + + A R +VL+ + PHN A++R Sbjct: 3 VFMVDKKLLEYL-------EGFLTDKRKQTFQKVLAERTRHFTVVLEDIYQPHNASAVVR 55 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW---GFQT 209 + F + + + + + + H Sbjct: 56 TCDIFGVQDLHVIENRYINRVSKYVTKGAQKWITTKRYKTDGDNTKTCLNHLKTAGYQII 115 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 L+ + K A + GAE G+ +E A + M G ++ N+S AA Sbjct: 116 ATSPHADANLLQDFKIDKKTAFVFGAEATGISDTVKEHADGFLKIPMVGFTESFNISVAA 175 Query: 270 AVAL 273 A+ L Sbjct: 176 AIIL 179 >gi|238504252|ref|XP_002383357.1| RNA methyltransferase, TrmH family [Aspergillus flavus NRRL3357] gi|220690828|gb|EED47177.1| RNA methyltransferase, TrmH family [Aspergillus flavus NRRL3357] Length = 495 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 68/345 (19%), Positives = 114/345 (33%), Gaps = 78/345 (22%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 K+ + H A R R K+ +T+ +YG V AAL Sbjct: 134 QDKRHSRRAEPTKHHRATERVPER-VKENVQVPDAIPYTTPASEF-IYGTSAVEAALRCS 191 Query: 65 SRKIFQLLATKNALARLD------WDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLAL 116 R++++L + + L L VK + + H G L Sbjct: 192 RRRMYKLYVYQASGEELSSAKVALRKLALSKNVKVKMAFGGWDRLLDKMSAGRPHNGCVL 251 Query: 117 ETAPLLS----------------------------------------PTLDAVRNSQLLM 136 E +PL D +++ Sbjct: 252 EASPLPRLPVRGLKSVPSIKEEDFGVELGAQSREEALVNSTNDKLKIHHWDQRTRYPVVL 311 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +LD + DP N+GAI+RSA D II R S S V K+++GA E++ + +SN Sbjct: 312 LLDGIVDPGNLGAIIRSAYYLGVDAIIFAGRNSAPLSPVTIKASAGAAENMTLLEVSNEV 371 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLE----------------QEIKNDKIALILGAEGKGL 240 D +Q+ + G++ + +++G+EG GL Sbjct: 372 DFIQRSKANGWKFYAADAPGPASKYVDTASIVEGKGTTEGEHVSTQSPCVIMMGSEGSGL 431 Query: 241 RPKTQETATSMAHLHM------------PGIIKALNVSNAAAVAL 273 + A S+ + P + +LNVS AAA+ + Sbjct: 432 SRHIKSHADSIVSIPGARLATPLGVESDPSRVDSLNVSVAAALLM 476 >gi|209966487|ref|YP_002299402.1| RNA methyltransferase, TrmH family [Rhodospirillum centenum SW] gi|209959953|gb|ACJ00590.1| RNA methyltransferase, TrmH family [Rhodospirillum centenum SW] Length = 265 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 44/242 (18%), Positives = 88/242 (36%), Gaps = 10/242 (4%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--PVKTVPPQTIDK 103 P+ + G+ V+A ++ +L + + P + V + +D+ Sbjct: 24 PKPFRICGLPAVAAVFARDPDRVQRLFYEERHRQAVGPFCARLAEARKPYRLVEKEELDR 83 Query: 104 IVGKEAVHQG------LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + G +H G + L++LD + +PHN+GAI+R+A F Sbjct: 84 VAGTP-LHGGVVAVAEPRQVLPFNPDWAKRWAAEGRPLLLLDGIGNPHNLGAIVRTAAFF 142 Query: 158 SCDGIITTKRYSP-SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 D ++ + S + A G E++ R A++++ Sbjct: 143 GLDRLVISDHPEQAQPSESAYRVAEGGFEYVQIYRADRFATAVRRLAESYRVVGTALGGH 202 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 A++LG E GL +T +A + G +++LNV+ AA+ + Sbjct: 203 PALGRLTGGPKPPAVLLGNEEDGLPAETLRACAELATIPGAGQVQSLNVAATAAILAWEM 262 Query: 277 QN 278 Sbjct: 263 TR 264 >gi|89097638|ref|ZP_01170526.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. NRRL B-14911] gi|89087497|gb|EAR66610.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. NRRL B-14911] Length = 159 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 2/148 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VL P N G I R+ A + ++ +L ++ +H+ + Sbjct: 5 IHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWQHVTILYYD 64 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQETA-TSM 251 +L + +K F + + +K I G E GL + +E Sbjct: 65 SLDEFYEKNAGGEFFYLTKFGQKPYTSFEYSDKEKDYYFIFGKETTGLPAEVKENNKDRA 124 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G +++LN+SN AA+ +Y Sbjct: 125 LRIPMTGNVRSLNLSNTAAILIYEALRQ 152 >gi|297581530|ref|ZP_06943453.1| rRNA methylase [Vibrio cholerae RC385] gi|297534368|gb|EFH73206.1| rRNA methylase [Vibrio cholerae RC385] Length = 158 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 4/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193 + L N G I+R + + E + ++ + + + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251 + F+ ++ + + L+ G E +GL + + Sbjct: 64 AAFIEYLQRERGSFRLFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAELIASLPVEQR 123 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 IRIPMMPEARSLNLSNAVAIIAFEAWRQ 151 >gi|188579913|ref|YP_001923358.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001] gi|179343411|gb|ACB78823.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001] Length = 149 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 50/147 (34%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L + L + P N G +LR A I L +S L+H+ R Sbjct: 1 MLHLALYQPDIPQNTGTMLRMAACLGVAVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + + + ++ P Q D L++G E G+ A + Sbjct: 61 RSWDAFQAWRQEARLRLVLATTAGALPYTQHAFRDGDCLLMGRESAGVPEAVHTAADARV 120 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + + +++LNV+ AA+ L Sbjct: 121 VVPIRPGLRSLNVAVCAAIILGEAIRQ 147 >gi|115352957|ref|YP_774796.1| RNA methyltransferase [Burkholderia ambifaria AMMD] gi|115282945|gb|ABI88462.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria AMMD] Length = 170 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 45/154 (29%), Gaps = 2/154 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + ++L P N G ++R + P + A + ++ E+ Sbjct: 10 QPDPTMFNVILVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYA 69 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + + ++ + G+E +GL E Sbjct: 70 EMRVHRDWDAFVAAEAPDPARMFAFTTRGSGRFHDHAFVPGDWFVFGSETRGLPADVLER 129 Query: 248 --ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 130 FPNEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 163 >gi|313471794|sp|A0KAS4|TRML_BURCH RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL Length = 156 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A + ++ E+ Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + ++ + G+E +GL + E Sbjct: 61 RDWDAFVAAETPDPARMFAFTTRGSGRFHDHAFLSGDWFVFGSETRGLPAELLERFPNEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149 >gi|262401978|ref|ZP_06078543.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC586] gi|262351950|gb|EEZ01081.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC586] Length = 158 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 4/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193 + L N G I+R + + E + ++ + + + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251 + F+ ++ + + L+ G E +GL + + A Sbjct: 64 AAFIEYLQRERETFRLFACTTKTTQHHVDAKFQQGDVLMFGPETRGLPAELIASLPAEQR 123 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 IRIPMMPEARSLNLSNAVAIIAFEAWRQ 151 >gi|154484057|ref|ZP_02026505.1| hypothetical protein EUBVEN_01766 [Eubacterium ventriosum ATCC 27560] gi|149735099|gb|EDM50985.1| hypothetical protein EUBVEN_01766 [Eubacterium ventriosum ATCC 27560] Length = 164 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 3/145 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++L P N G I R+ A + L ++ + + + Sbjct: 3 VILLEPEIPQNTGNIGRTCCATGTKLHLIEPMGFRINEKNLKRAGMDYWDDLDVTIYDSF 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254 D + + + ++ G E G+ + + + + Sbjct: 63 KDFMDQHPGIKIWMATTKA--PHRYTDVEFGPDDYIMFGKESAGIPEEILVDNEDTCIRI 120 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 M I++LN++N+ A+ LY Sbjct: 121 PMNPEIRSLNLANSVAIVLYEALRQ 145 >gi|297623001|ref|YP_003704435.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM 17093] gi|297164181|gb|ADI13892.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM 17093] Length = 157 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L+ G E +GL + A S + M G ++LN++ + V LY Sbjct: 93 VRYRPGDVLLFGPESRGLPEAVRALA-SPVRIPMQGGARSLNLAVSVGVGLYEAWRQL 149 >gi|218670695|ref|ZP_03520366.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli GR56] Length = 209 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 82/171 (47%), Positives = 114/171 (66%), Gaps = 13/171 (7%) Query: 14 SLKDSHYAKLRRNHRDYKKMQ----SFNQKSRHTSQ--------PENLFLYGVHTVSAAL 61 S KD+HYA LRR HRD K+ + + + R ++ P+ ++LYG+HTV AAL Sbjct: 16 SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRAEDWKPPALAPDQVYLYGLHTVRAAL 75 Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 +NP RK +L T+NALARL+ D + V P IDK++G EA+HQG+ LET PL Sbjct: 76 DNPERKKIKLSVTQNALARLEIDVETL-GIAFEIVSPHEIDKVLGPEAIHQGVMLETRPL 134 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 L+A+++S LL+VLD V DPHN+GAI+RSAVAF+ +ITT+R+SP+E Sbjct: 135 PVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTE 185 >gi|83311572|ref|YP_421836.1| rRNA methylase [Magnetospirillum magneticum AMB-1] gi|82946413|dbj|BAE51277.1| rRNA methylase [Magnetospirillum magneticum AMB-1] Length = 214 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 IALILG E GL T + L G +++LNV+ AA+ ++ Sbjct: 160 KPIALILGNEEDGLPTATLAACDDIVTLPGSGRVQSLNVAATAAILIHELAKQR 213 >gi|332992179|gb|AEF02234.1| rRNA methylase [Alteromonas sp. SN2] Length = 271 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 96/278 (34%), Gaps = 40/278 (14%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN------------PSRKIFQLLATKN 76 D KK+ + ++ Q + G H V + PS + L T + Sbjct: 6 DVKKLH----QKKYRGQFGFYLVEGEHLVLELVKAVRANAYSNASSAPSAESITLYITDD 61 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL---------------ETAPL 121 + L F + V + + ++ + +A + + Sbjct: 62 FEQK---ARALDSGFTLVNVTQKQMSQLSDTKTPQGIIACVPLPSSTAGATNTLEQVSDK 118 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 S ++ Q + L V DP N+G ILR+ F ++ + ++ + +S+ Sbjct: 119 HSNQGLGHKDKQRYVYLHEVQDPGNLGTILRTLAWFDNFSLLLSPNSVDPFNSKVVRSSM 178 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 GA+ H+P +L + + + + + + +D + G E +G+ Sbjct: 179 GAIFHVPIELDVSLDALQTRFSRFAYLDMAGEAVTAPS-----FSDFDCYLFGNEARGVP 233 Query: 242 PKTQETATSMA-HLHMPGIIKALNVSNAAAVALYITQN 278 + A + G I +LN+++A + +Y Sbjct: 234 KAALSAFNAKAYTIAGSGKIDSLNLASAVNMCVYELSR 271 >gi|313895570|ref|ZP_07829126.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas sp. oral taxon 137 str. F0430] gi|320528960|ref|ZP_08030052.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas artemidis F0399] gi|312975696|gb|EFR41155.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas sp. oral taxon 137 str. F0430] gi|320138590|gb|EFW30480.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas artemidis F0399] Length = 162 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 24/96 (25%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PK 243 + S+ + + L+ G E GL Sbjct: 50 YWHLVTVHYHDRFDEVLEMYPNRTFYFCSTKASRTHCDVAYPPDAFLVFGKESAGLPHDL 109 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA AV Y Sbjct: 110 LAAHRDRTIRIPMASGARSLNLSNAVAVVAYEALRQ 145 >gi|320534170|ref|ZP_08034700.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171 str. F0337] gi|320133606|gb|EFW26024.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171 str. F0337] Length = 278 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 87/263 (33%), Gaps = 25/263 (9%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY ++ + R +Q ++ A+ L LA + Sbjct: 14 ADYTRLTDVALRRRLETQRGLYMAESSKVITRAVAAGHAP-RSFLMAPRHLAEMRPVIAS 72 Query: 88 PHP---------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-------TLDAVRN 131 PV P + ++ I G +H+G Sbjct: 73 AAGCGGNDDGGEVPVFVAPEEVLESITGFH-LHRGALAAMNRPELIGVSELLSAARGGAG 131 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++ + +L+ + D N+GA RSA A D ++ T R + + + G + +P+ R Sbjct: 132 ARRVAILEDLVDHTNVGAAFRSAAALGIDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTR 191 Query: 192 ISNLTDALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 I + T + + ++A++LG EG GL +T Sbjct: 192 IERWPAMDELHGQGFTVAALALSDTSVALDEFAASTACTGADSRVAVVLGTEGDGLSHRT 251 Query: 245 QETATSMAHLHMPGIIKALNVSN 267 A + + M G + +LNV+ Sbjct: 252 IAAADEVVRIPMAGGVDSLNVAA 274 >gi|256830648|ref|YP_003159376.1| tRNA/rRNA methyltransferase SpoU [Desulfomicrobium baculatum DSM 4028] gi|256579824|gb|ACU90960.1| tRNA/rRNA methyltransferase (SpoU) [Desulfomicrobium baculatum DSM 4028] Length = 158 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 2/144 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L P N G I R A + + + L ++ H+ + Sbjct: 3 IALYEPEIPPNTGTIARLCAASTTRLNLIEPLGFSLDDKYLKRAGLDYWPHVDKRIWPSW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 L+ + S+ + ++LG E +GL P+ A + + Sbjct: 63 PAFLEGRDPGRL--VFTSARQGVAYHRFSFRADDIIVLGPETRGLPPEVLHDAQDLIRIP 120 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 + G ++++N++NAAAV LY Sbjct: 121 IWGEVRSVNLANAAAVLLYEAYRQ 144 >gi|208434474|ref|YP_002266140.1| 23S rRNA methyltransferase [Helicobacter pylori G27] gi|208432403|gb|ACI27274.1| 23S rRNA methyltransferase [Helicobacter pylori G27] Length = 218 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 50/217 (23%), Positives = 86/217 (39%), Gaps = 4/217 (1%) Query: 57 VSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 V LN+ K+ ++ +K + + L P + + K HQG+ Sbjct: 2 VMHILNSYQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGGNHQGVLA 59 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 + L+ +L V+ +Q L+VL + D NIG I RSA DG+I ++ + Sbjct: 60 KVELPLAASLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFAKELAYEG 117 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 +S L + + + T L +S + + K AL LG+E Sbjct: 118 IVRSSLGLMYDLPFSVMSNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKCALFLGSE 177 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +GL K ++ + M +LNVS AA + + Sbjct: 178 HEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 214 >gi|148554317|ref|YP_001261899.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas wittichii RW1] gi|148499507|gb|ABQ67761.1| tRNA/rRNA methyltransferase (SpoU) [Sphingomonas wittichii RW1] Length = 149 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++LG+EG G+ + A + M ++LNV+ +A +AL Sbjct: 89 FLPDDIVLLGSEGAGVPRPVHDRADLRVRIPMRPGFRSLNVAVSAGIALAEALRQ 143 >gi|222824411|ref|YP_002575985.1| rRNA methyltransferase, TrmH family [Campylobacter lari RM2100] gi|222539632|gb|ACM64733.1| conserved hypothetical protein, probable rRNA methyltransferase, TrmH family [Campylobacter lari RM2100] Length = 226 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 5/224 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG L KI ++ K + ++ +K + +T + + Sbjct: 2 IVYGKQVFFYILEKHKEKIKEIYLAKEC-EKANFSKIAKASKKIKKLDFKTAQSLA-RGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG +E + ++++ +++L +++D NIGAI+RSA A DGII + Sbjct: 60 NHQGFLMEIDEFEFSSFESLKEKDFIVILYNISDVGNIGAIVRSAYALGADGIILVAKSV 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + AS I +++ ++ I S+ + DK Sbjct: 120 AMD---GVIRASSGAALDMKIVLNDDILSMINELKQKGFYIYASASGGSDIHTIKTKDKK 176 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 LI+G+EG G+ PK + + M +LNVS A A+ Sbjct: 177 VLIMGSEGFGIAPKVLKKCDECVGIKMHNDFDSLNVSAAFAILC 220 >gi|328352968|emb|CCA39366.1| RNA methylase [Pichia pastoris CBS 7435] Length = 344 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 62/319 (19%), Positives = 118/319 (36%), Gaps = 48/319 (15%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-PENLFLYGVHTVSAAL 61 + K+ + + + K + D +++R + P ++G V AAL Sbjct: 21 HVHAKQKQVRLDKEAARTQKFPSRNSDLSPDSKQIRRNRPPKENPLEERIFGAQAVLAAL 80 Query: 62 NNPSRKIFQLLATKNALARLDW--DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 +R+ L N + + + +K V + ++ VH G L+ A Sbjct: 81 KANNREFLSTLYVHNPKEKHEEITELCKERGVDIKLVDSKNDLNLLCNNNVHNGYVLKAA 140 Query: 120 PLLSPTLDA------------------------------VRNSQLLMVLDHVNDPHNIGA 149 + L A + L + +D V+DPHN+GA Sbjct: 141 KFQTRELAALSTVTSKGVFSLTLQDYGVRSEEQFEVQRLNGSFPLGVYIDGVSDPHNLGA 200 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+RS+ D + ++ ++V +KS++G +E +P + L+ + G+ T Sbjct: 201 IIRSSYYLGADFVAIAEKNCAPLNSVASKSSAGCMEFLPIFNVVKPLQFLEAANENGWAT 260 Query: 210 IGLSSDSKKPLEQEIK----------NDKIALILGAEGKGLRPKTQETATSMAHL----- 254 + S K LI+G+EG G+R + ++ + L Sbjct: 261 VSAVSSVPKKNANRELLSEELSSTLSEQPCLLIVGSEGDGIRKSLLDRSSHLVSLKSQRK 320 Query: 255 HMPGIIKALNVSNAAAVAL 273 ++ + +LNVS A AV L Sbjct: 321 NLDSSVDSLNVSVATAVLL 339 >gi|24380097|ref|NP_722052.1| putative rRNA methylase [Streptococcus mutans UA159] gi|24378093|gb|AAN59358.1|AE015001_3 putative rRNA methylase [Streptococcus mutans UA159] Length = 246 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 100/265 (37%), Gaps = 31/265 (11%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + I K K R+ + + G H + A Sbjct: 1 MTIITSKANSLIKKTKKLLQKKYRQY---------------------SYLIEGWHLFAEA 39 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + I + + +R+ N V V + + + +A P Sbjct: 40 -QANNADIINIFVLECYASRVSEFPN------VVLVSEDILKDLSASKTPQGIVAEIAFP 92 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 LL + V DP N+G I+R+A A + D + +++ + ++ +S Sbjct: 93 KQVIPQQFFGKYLLL---EDVQDPGNVGTIIRTADAAAFDAVFVSEKTADIYNSKTLRSM 149 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G+ H+P R++ L+ ++ SD + K + ALI+G EG+G+ Sbjct: 150 QGSHFHLPIYRVNLLSLVNDLKNADVTTIATTLSDHSCDYKSLKKVENFALIMGNEGQGI 209 Query: 241 RPKTQETATSMAHLHMPGIIKALNV 265 + E A + H+ MPG ++LNV Sbjct: 210 TSEMTEQADVLTHITMPGRAESLNV 234 >gi|255994890|ref|ZP_05428025.1| SpoU rRNA Methylase family protein [Eubacterium saphenum ATCC 49989] gi|255993603|gb|EEU03692.1| SpoU rRNA Methylase family protein [Eubacterium saphenum ATCC 49989] Length = 280 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 36/252 (14%), Positives = 78/252 (30%), Gaps = 18/252 (7%) Query: 42 HTSQPENLFLYGVHTVSAALNNP-------SRKIFQLLATKNALARLDWDANLPHPFP-- 92 + F G V + + ++ L + L Sbjct: 23 YRDSEGCFFATGEKFVKDLIVANLPGCSDAHHIVDAVIVEDGYLEKYLSQTRLAGQLKKL 82 Query: 93 -----VKTVPPQTIDKIVGKEA-VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 VK Q + K+ ++ H L+ + + + S+ ++ L + DP N Sbjct: 83 IAAGLVKCFSSQVMGKLSDDKSAQHIAAVLKKSFFVQAAANKFDLSENILGLCEIQDPRN 142 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI+R+A A +++ + + A + + Sbjct: 143 LGAIMRTAAATGTGLLLSND---SCDVFSDKVIRTSAGLFDRVGFVQATSREDFLNRLKD 199 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + + +++G EG+GL AT + M + +LNV Sbjct: 200 RRVFAAALNEGMIYTNLNGMKNTCILMGNEGRGLYEDDFNIATDKVFIPMENDVDSLNVG 259 Query: 267 NAAAVALYITQN 278 AA++ ++ Sbjct: 260 VAASLFMFELNR 271 >gi|152991299|ref|YP_001357021.1| RNA methyltransferase [Nitratiruptor sp. SB155-2] gi|151423160|dbj|BAF70664.1| RNA methyltransferase, TrmH family [Nitratiruptor sp. SB155-2] Length = 227 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 4/224 (1%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG +++ S I ++L KN A + W+ ++ + + + + K Sbjct: 2 IVYGKQIFHYIIDHHSHIIQRILLNKNVDAGV-WNKLQRLGVKIERIDNKK-AQALAKGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG LE + + V+N L++L +V D NIG+I+RSA A DG++ + Sbjct: 60 NHQGFLLEIEDYVFTPFEVVKNFDFLVLLYNVTDIGNIGSIVRSAYALGVDGLVISGLKD 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 V+ +S+ AL I + K + + + + + + K Sbjct: 120 LKMEGVIRRSSGAAL--DLPIALQFNLYDAIKELQDRNFLVYAADMQGEDVRTKRFHGKR 177 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 A++LG+EG+G+ K + + + M +LNV+ AAA+ + Sbjct: 178 AILLGSEGEGVPKKAVQKCNEILKIEMKRDFDSLNVAAAAAIFI 221 >gi|39996299|ref|NP_952250.1| RNA methyltransferase [Geobacter sulfurreducens PCA] gi|39983179|gb|AAR34573.1| RNA methyltransferase, TrmH family, group 2, putative [Geobacter sulfurreducens PCA] Length = 164 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 46/153 (30%), Gaps = 3/153 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + +VL P N G I R A + K ++ L ++ + Sbjct: 1 MTGHQPFHIVLVEPEIPPNTGNIARLCGATGTVLHLVGKLGFSTDDRYLKRAGLDYWSEV 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +L Q F + + + ++ G E GL Sbjct: 61 DIRYWESLDQLRQAWPDARFFYTSKKA--ARCYVDAGFREGDFIVFGKETVGLPEDLLRA 118 Query: 248 AT-SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + G +++LN+S AA + LY Sbjct: 119 NEEHCVRIPIFGKVRSLNLSTAAGIVLYEALRQ 151 >gi|27364652|ref|NP_760180.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus CMCP6] gi|37681300|ref|NP_935909.1| rRNA methylase [Vibrio vulnificus YJ016] gi|320155047|ref|YP_004187426.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus MO6-24/O] gi|27360797|gb|AAO09707.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus CMCP6] gi|37200051|dbj|BAC95880.1| predicted rRNA methylase [Vibrio vulnificus YJ016] gi|319930359|gb|ADV85223.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus MO6-24/O] Length = 157 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 3/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L N G I+R + + E + ++ + R N Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKNY 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMA 252 L + G I + L+ G E +GL + E+ + Sbjct: 64 QAFLDYLEQRGEYRIFACTTKTTGHHVDAQYRQGDVLLFGPETRGLPMEVIESLPMSQRI 123 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ + Sbjct: 124 RIPMMPDARSLNLSNAVAIIAFEAWRQL 151 >gi|121602085|ref|YP_989283.1| RNA methyltransferase [Bartonella bacilliformis KC583] gi|120614262|gb|ABM44863.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583] Length = 155 Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 43/149 (28%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L + L + N G ILR I L ++ LE R Sbjct: 1 MTLHIALFQPDIAGNTGTILRLGACLGVHVHIIEPAGFDLSDRNLKRAGMDYLERASLER 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + L M + + LS+ + L+ G E G+ + Sbjct: 61 HIDWQHFLDAMQKFNRRLFLLSTKATTCYTNIRYQKNDVLLFGRESAGVPDYVHQAVDCT 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN++ + A+ Sbjct: 121 LKIPMQQQARSLNLAMSVAITTGEALRQI 149 >gi|78067649|ref|YP_370418.1| RNA methyltransferase TrmH, group 2 [Burkholderia sp. 383] gi|77968394|gb|ABB09774.1| RNA methyltransferase TrmH, group 2 [Burkholderia sp. 383] Length = 156 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A + ++ E+ Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + ++ + G+E +GL + E Sbjct: 61 RDWDAFVAAETPDPARMFAFTTRGSGRFHDHAFLPGDWFVFGSETRGLPAELLERFPNEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149 >gi|308231660|ref|ZP_07413343.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu001] gi|308378747|ref|ZP_07483775.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu010] gi|308379893|ref|ZP_07488012.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu011] gi|308216360|gb|EFO75759.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu001] gi|308359254|gb|EFP48105.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu010] gi|308363164|gb|EFP52015.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu011] Length = 230 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 86/222 (38%), Gaps = 6/222 (2%) Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + L T LA L D P + +++G LA Sbjct: 2 LASRFTPL-ALFGTDRRLAELKDDLA-GVGAPYYRASADVMARVIGFHLNRGVLAAAGRV 59 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 V ++ + VL+ VND N+G+I R+A S D ++ + + + Sbjct: 60 PEPSVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVS 119 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ----EIKNDKIALILGAE 236 G +PY R ++ L + GF+ + ++ + +++IAL++GAE Sbjct: 120 MGHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAE 179 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 G GL + + M +LNV+ AAA+A Y Sbjct: 180 GPGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTR 221 >gi|258625649|ref|ZP_05720528.1| rRNA methyltransferase [Vibrio mimicus VM603] gi|258581887|gb|EEW06757.1| rRNA methyltransferase [Vibrio mimicus VM603] Length = 158 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 4/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193 + L N G I+R + + E + ++ + + + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251 + F+ ++ + + L+ G E +GL + + A Sbjct: 64 AAFVEYLQRERGTFRLFACTTKTTQHHVDAKFKQGDVLMFGPETRGLPAELIASLPAEQR 123 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 IRIPMMPEARSLNLSNAVAIIAFEAWRQ 151 >gi|78356571|ref|YP_388020.1| RNA methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218976|gb|ABB38325.1| RNA methyltransferase, TrmH family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 152 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 1/143 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VL P N G + R A + + + ++ H+ Sbjct: 1 MHIVLFQPEIPPNTGNVARLCAATRTSLHLIEPLGFSVDDKHVRRAGLDYWPHVDLTVWP 60 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 ++++ S + S+ ++ N AL+ G E +GL + + + Sbjct: 61 GWYAFMREVGSRVRL-VMTSARGGTAVQDFRFNKNDALVFGPESRGLPAHMLDGSGHVVR 119 Query: 254 LHMPGIIKALNVSNAAAVALYIT 276 + + G +++LN+S AA + LY Sbjct: 120 IPIWGEVRSLNMSTAAGIVLYQA 142 >gi|323495118|ref|ZP_08100204.1| RNA methyltransferase [Vibrio brasiliensis LMG 20546] gi|323310619|gb|EGA63797.1| RNA methyltransferase [Vibrio brasiliensis LMG 20546] Length = 158 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 4/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193 + L N G I+R + + E + ++ + + + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251 + ++ ++ + L+ G E +GL + E+ Sbjct: 64 QAFVEYLEKERGDYRIFACTTKTTGHHVDANFQKGDVLLFGPETRGLPAELIESMPMEQR 123 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 IRIPMMPDARSLNLSNAVAIIAFEAWRQ 151 >gi|241661853|ref|YP_002980213.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D] gi|240863880|gb|ACS61541.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia pickettii 12D] Length = 156 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P E A + ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 ++ L+ + L++ P + G+E +GL + +E AT Sbjct: 61 ADWDAFLRDAQPDPARMFALTTRGSTPFASMAFQPGDWFVFGSETRGLSEERREWFPATQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149 >gi|148241713|ref|YP_001226870.1| rRNA methylase [Synechococcus sp. RCC307] gi|147850023|emb|CAK27517.1| rRNA methylase [Synechococcus sp. RCC307] Length = 279 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 107/285 (37%), Gaps = 26/285 (9%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M+ + ++ I S R + +++++ Q R + L Sbjct: 1 MSRFDGRPADLISS----------RRNPLVQQVRALQQ-PRGRREQGLL--------LLE 41 Query: 61 LNNPSRKIFQLLATKNAL----ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA- 115 + ++ +L + L + L P++ V P+ + + ++ +A Sbjct: 42 GTHLLQECRRLGLPLDRLIATTRWQEQHPTLLGSEPLQPVSPEVLQAMASTDSPDGVIAL 101 Query: 116 -LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 AP L S LL+ LD V DP N+G ILR+A+A D + P + Sbjct: 102 LPHPAPGLQAPSWPQAKSPLLLALDRVQDPGNLGTILRTALAAGVDRVWLGGGADPWQPK 161 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 VL SA ALE + R+ +L L G D +P Q + L+LG Sbjct: 162 VLRASAGAALE-LSMQRLDDLAPVLAMARERGVACYAALRDGGQPYWQPDWHQPSLLLLG 220 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 EG GL P + + + +++LNV+ AA V L Sbjct: 221 NEGSGLDPALVQQGVTALTIPHHAAVESLNVAVAAGVLLLERVRQ 265 >gi|110597360|ref|ZP_01385647.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM 13031] gi|110340904|gb|EAT59375.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM 13031] Length = 180 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 63/151 (41%), Gaps = 2/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + ++L ++ N+G++ R+A A + +I + + + K+A GA + + + Sbjct: 24 PKHPIYLMLHNIRSMWNVGSMFRTADAAGIEKMILSGYTATPPRKEIDKTALGAQDSVAW 83 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQET 247 ++ AL + G + GL + + L++G E GL + E Sbjct: 84 EYHADPLVALSALKRAGVKICGLEITEGSRPYSALTPGDFPLCLVVGNEVDGLENELLEL 143 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + G +LNV+ A+ +AL+ Sbjct: 144 CDEVLEIPQYGTKHSLNVAVASGIALFEFVR 174 >gi|237726961|ref|ZP_04557442.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229433817|gb|EEO43894.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 226 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 89/237 (37%), Gaps = 21/237 (8%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---PVKTVPPQTIDKIVGK 107 G V L L+AT N + HP + V + + + + Sbjct: 2 AEGHKLVGDLL--GYFPCKLLIATSNW-------LKINHPVTANEIIEVTQEELSRASLQ 52 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 + + LA+ P + +++S L + LD V DP N+G I+R A F + I + Sbjct: 53 KTPQEVLAVFVQPSYDLNPEVIKSS-LCLALDDVQDPGNLGTIIRLADWFGIEHIFCSAG 111 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + + ++ GAL + S Q + S + + S + E + Sbjct: 112 TADVYNPKTVQATMGALARVKVHYCSLP----QLIESLADIPVYGTFLSGNIIYAESLSA 167 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALNVSNAAAVALYITQNHF 280 +++G EGKG+ P+ ++ ++ ++LNV+ A AV + Sbjct: 168 HGLIVMGNEGKGVSPEVEKLINKKLYIPNYPQERETSESLNVAIATAVVCSEFRRRL 224 >gi|223043587|ref|ZP_03613632.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus capitis SK14] gi|222443075|gb|EEE49175.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus capitis SK14] Length = 156 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 1/149 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + ++ +L ++ EH+ Sbjct: 1 MTNHIVLFQPEIPANTGNIARTCAGTFTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 ++ + + + + + I G E GL +E A + Sbjct: 61 HESIEEFFDSTKGNYYLLTKFGKQTYSDFDFSNTLENHYFIFGRETTGLPDWIKEKYADT 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN AA+ +Y Sbjct: 121 ALRIPMSDKIRSLNLSNTAALLIYEALRQ 149 >gi|206559142|ref|YP_002229902.1| SpoU rRNA methylase family protein [Burkholderia cenocepacia J2315] gi|198035179|emb|CAR51053.1| SpoU rRNA methylase family protein [Burkholderia cenocepacia J2315] Length = 156 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A + ++ E+ Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 N + + ++ + G+E +GL + E Sbjct: 61 RNWDAFVASEAPDPARMFAFTTRGSGRFHDRAFLPGDWFVFGSETRGLPAELLERFPNEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149 >gi|301062443|ref|ZP_07203095.1| RNA methyltransferase, TrmH family [delta proteobacterium NaphS2] gi|300443443|gb|EFK07556.1| RNA methyltransferase, TrmH family [delta proteobacterium NaphS2] Length = 272 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 36/256 (14%), Positives = 79/256 (30%), Gaps = 14/256 (5%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + +K+ R + L G + L + + ++ + + + Sbjct: 11 NTTFKRFLRLQH-PRDIRKHGKALLSGPKQIREVLQEFTDRCAGVICSNRHEDSEFPEVD 69 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 P + P ++ L P D + DP N Sbjct: 70 ---SLPRYRLSPDLFKQVDTFGT--GKPLLIVRAETFPPFDDTLYHPGCTLCVPFQDPSN 124 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GA++R++ AF I+ K + + A + + + + + Sbjct: 125 VGAVIRASAAFGVKQIVMLKEAAHPFHPKSLRVAGSNIFRVSFFQGPA-----LRQLKKL 179 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + S K + D L+ G EG G+ + + + + M +++LN + Sbjct: 180 EIFLIIMSTEGKDAARFEFPDSFCLLPGMEGPGIP-EILKGS-GNVSIPMAKGVESLNAA 237 Query: 267 NAAAVALY-ITQNHFA 281 A + LY F Sbjct: 238 MATGIVLYLWRNRQFN 253 >gi|260885962|ref|ZP_05897293.1| RNA methylase, SpoU family [Prevotella tannerae ATCC 51259] gi|260851105|gb|EEX70974.1| RNA methylase, SpoU family [Prevotella tannerae ATCC 51259] Length = 179 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 3/151 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGALEHIPY 189 L++VLD+V HN+G++ R+A AF G+ R E A A +++ + Sbjct: 24 PLVVVLDNVRSLHNVGSVFRTADAFRLSGVCLCGITGRPPMVEIHKTALGAEDSVDWEYF 83 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +AL++ F ++ + + K AL+LG E KG+ + + Sbjct: 84 EDPLAAVEALRRRGYLIFAVEQVAGSRPLHQLRLSPDQKYALVLGNEVKGVTQSVVDASD 143 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + G +LNVS +A + L+ Sbjct: 144 AAVEIPQYGTKHSLNVSVSAGIVLWEFAKQL 174 >gi|157373044|ref|YP_001481033.1| putative tRNA/rRNA methyltransferase YibK [Serratia proteamaculans 568] gi|157324808|gb|ABV43905.1| RNA methyltransferase, TrmH family, group 2 [Serratia proteamaculans 568] Length = 157 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + P + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPMGFPWDDKRLRRAGLDY--HEFASIR 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + A + L++ L+ G E +GL + E A Sbjct: 59 RHADYAAFIASENPQRLFALTTKGTPAHSAVSYQAGDYLLFGPETRGLPAEILEALPAQQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA AV +Y Sbjct: 119 KIRIPMQAQSRSMNLSNAVAVVVYEAWRQL 148 >gi|241668442|ref|ZP_04756020.1| rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876975|ref|ZP_05249685.1| rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842996|gb|EET21410.1| rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 252 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 85/259 (32%), Gaps = 20/259 (7%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + + K+++ + + + + G+ AL+ ++ L T + + Sbjct: 5 SQKLIKEIKKLH-SPQGRKKSIYYVIEGLRCCDEALSRLPKEDLIALLTTENTDNISYPV 63 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 + + + ++++ + L L S + + L++ D + DP Sbjct: 64 DKK-----YILSEKDLNELTQTQNSQGVLILAKKKDTSSDFEFKDDFILVL--DRIQDPG 116 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 NIG ILR+A+A I+ + ++ GA + + NL+ Sbjct: 117 NIGTILRTAIAVGLTEIVLINGTVDPFNPKAIRAGMGAQFSLKFRYFENLSAVRNYPTLK 176 Query: 206 GFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMA----HLHMPGII 260 + + + L+ G E G+ + I Sbjct: 177 ERKIWLTTPHEGVSCYSKEFKLSNSVLVFGEEANGIE-------DFSVGEKTMIPTLSNI 229 Query: 261 KALNVSNAAAVALYITQNH 279 ++LNV+ AA + L+ Sbjct: 230 ESLNVAQAATIYLFEGLRQ 248 >gi|155371979|ref|NP_001094596.1| rRNA methyltransferase 1, mitochondrial [Bos taurus] gi|154425820|gb|AAI51495.1| MRM1 protein [Bos taurus] gi|296477019|gb|DAA19134.1| mitochondrial rRNA methyltransferase 1 homolog [Bos taurus] Length = 360 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 23/223 (10%) Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQ 133 A PV + +D + + VHQG+ +E +PL Q Sbjct: 94 ELLRAAEERAIPVLRPRRRELDVLCRHQ-VHQGVCMEVSPLRPRPWAEAEVARPGDDPQQ 152 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL+ + DP N+GA+LRSA D +IT++R S + V++K+++GA+E + Sbjct: 153 LWLVLEGLQDPRNLGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKASAGAMEVMDVFSTD 212 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKK-----------PLEQEIKNDKIALILGAEGKGLRP 242 +L LQ G+ G + + L+LG EG GL Sbjct: 213 DLAGFLQARARQGWLVAGTVGCPGPEIALSSKIPVTRCLDFLWDRPTLLVLGNEGSGLSR 272 Query: 243 KTQETATSMAHL-H---MPGIIKALNVSNAAAVALYITQNHFA 281 Q + + + +P +++LNVS AA + L+ + Sbjct: 273 AVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICSQRK 315 >gi|238063949|ref|ZP_04608658.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149] gi|237885760|gb|EEP74588.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149] Length = 286 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 90/240 (37%), Gaps = 7/240 (2%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVG 106 G V AL P + +L T AL R A PV V + + + Sbjct: 46 FLAEGPQAVREALARPGT-VTELFGTPAALDRYADLAEHAADADVPVSDVTDEALAALAE 104 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 A +A+ + +L+ VL + DP N G +LR+A A ++ Sbjct: 105 TVAPQGLVAVCRHLDVPLDAALAAGPRLVAVLAEIRDPGNAGTVLRTADAAGAGAVVFAG 164 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-- 224 + ++++G+L H+ +R + ++ + + G + + L+ Sbjct: 165 DAVDPYNGKCVRASAGSLFHVDVVRAGDPVAVVEALRAAGLAVLATTGYGDSDLDDLADG 224 Query: 225 --KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A + G+E GL A + + + G ++LN++ AAAV LY + + Sbjct: 225 GALAAPTAWLFGSEAHGLPGGLAAAADARVRVPLHGRAESLNLAAAAAVCLYASARALRR 284 >gi|224826042|ref|ZP_03699145.1| RNA methyltransferase, TrmH family, group 2 [Lutiella nitroferrum 2002] gi|224601679|gb|EEG07859.1| RNA methyltransferase, TrmH family, group 2 [Lutiella nitroferrum 2002] Length = 154 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R C+ + P + A L ++ E+ + Sbjct: 1 MFTVVLFQPEIPPNTGNVIRLCANTGCELHLVKPLGFPLDDAKLRRAGLDYHEYARLVVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 N + +Q L+ G E +GL + ++ A Sbjct: 61 ENWEACRTALSGRRIFAATTKG--ATRHDQTAFRPGDVLLFGPESRGLPQEVLDSFPADR 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++N+SNA AV ++ Sbjct: 119 RVRLPMQPESRSMNLSNAVAVMVFEAWRQ 147 >gi|239996152|ref|ZP_04716676.1| rRNA methyltransferase [Alteromonas macleodii ATCC 27126] Length = 260 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 88/265 (33%), Gaps = 24/265 (9%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK-----IFQLLATKNALARLDW 83 D KK+ + + +Q + G H V +N L T + A L Sbjct: 5 DVKKLH----QKKFRTQFGFYLVEGEHLVLELINVAQHDSSTLGDITLYVTADYEAWLKE 60 Query: 84 DANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLAL--------ETAPLLSPTLDAVRNSQL 134 + V+TV Q + ++ ++ +A + + +++ Sbjct: 61 KLDSSVSNMKVETVSSQQMQQLSDTKSPQGIIARVPLPNSALYSERSQTSISANKSSAEK 120 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + L V DP N+G ILR+ ++ + ++ +S+ GA+ H+ Sbjct: 121 YIYLYEVQDPGNLGTILRTLAWLGDFTLLLSPNSVDPYNSKAVRSSMGAIFHVNMELNVA 180 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA-H 253 + F+ + + D + G E +G+ + A Sbjct: 181 -----LESLGERFERFAFLDMNGSNITSNTFGDYQCYLFGNEARGVPVDALSKLNATAYT 235 Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278 + G I +LN+++A + Y Sbjct: 236 IAGSGKIDSLNLASAVNICAYELTR 260 >gi|168701120|ref|ZP_02733397.1| putative rRNA methylase [Gemmata obscuriglobus UQM 2246] Length = 172 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGI-IKALNVSN 267 + + +++P + D L+ G+E GL P +E A + + MPG +++LN++ Sbjct: 97 WCVETPAERPYTRAEFADGDCLLFGSESSGLPPSVRERYADRLVGIPMPGGAVRSLNLAT 156 Query: 268 AAAVALYITQNHF 280 A + LY Sbjct: 157 AVGIVLYDALRRL 169 >gi|241206031|ref|YP_002977127.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859921|gb|ACS57588.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 274 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 94/256 (36%), Gaps = 9/256 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYG---VHTVSAALNNPS--RKIFQLLATKNALAR 80 + + + ++ T + G + ++ A LL Sbjct: 12 DDPRVAEFREIRER-DLTGRENRFIAEGTVVLRMLAEAHAAGRGFFAEKILLLRNRVEGV 70 Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL--LSPTLDAVRNSQLLMVL 138 L P PV +D +VG LAL + LDA+ L++V Sbjct: 71 LPILERFPADVPVYVAGADVLDGVVGFHLHRGVLALGRRQDRGEAALLDALPERALVLVG 130 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 +++ N G++ R+A AF D ++ + + + G++ +P+ R D Sbjct: 131 CGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYRKALRVSVGSVLSVPHRRGGKALDV 190 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L + GF LS K + + ++AL++G EG+GL A + Sbjct: 191 LVALAERGFAIWTLSPHGKTDIRAIPASTRMALVVGTEGEGLPEALLARF-QSARIPQSE 249 Query: 259 IIKALNVSNAAAVALY 274 + +LN + A +AL+ Sbjct: 250 ELDSLNAATATGIALF 265 >gi|294667071|ref|ZP_06732297.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603163|gb|EFF46588.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 305 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 10/236 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 LYG++ V A + +L ++ + + + + V + K+ Sbjct: 65 LYGINAVQAVFKTRPEALRKLYLSEARIPQFKALLAWCVTQRIGYRVVDEADLSKLAA-S 123 Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 A H+G+ E + L + L + L V +PHN GAILRS+ F G++ Sbjct: 124 AHHEGVVAEVLRVTPQPLQEWLAALPQGPVLALWLCGVGNPHNFGAILRSSAHFGVAGLL 183 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + S A+ A G E +P +++ + AL ++ GF D + + Sbjct: 184 LPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATALAQLRQAGFAIAATLVDGGQDVFAA 243 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277 ++ ++GAE +G+ + G +++LNV++A AV A + + Sbjct: 244 ALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 299 >gi|223992883|ref|XP_002286125.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977440|gb|EED95766.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 180 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 64/161 (39%), Gaps = 4/161 (2%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + + ++LD ++DP N+G +LRS A +I + +SA GA Sbjct: 14 DVPSKEMPPFYLILDGLSDPGNVGTLLRSCAASQVTALILLPNSCDVWNPKAVRSAMGAS 73 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +P + ++N D + + + A+ILG EG+GLR + Sbjct: 74 FRVPVLELTNADDKDGALDQKKSLAHFQVDWIRHTKDDSKSGGGSAIILGREGEGLRREV 133 Query: 245 QETATS----MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + H+ M +++LN + +V ++ ++ Sbjct: 134 RAAIKQGSISTVHIPMADGVESLNAAVCGSVIMFERMRQWS 174 >gi|315022826|gb|EFT35850.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Riemerella anatipestifer RA-YM] gi|325336783|gb|ADZ13057.1| rRNA methylase [Riemerella anatipestifer RA-GD] Length = 231 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +L V++ V N AI+RS A + ++ ++ + + + + Sbjct: 41 FILPVMEDVYQYRNAAAIVRSVEACAFHKVVALEKDNVFDPNLSVTKGADTWV-EVEKMP 99 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 N + ++ L IAL+ G E +G+ + + A Sbjct: 100 RNKASLEKIKERGYKIVAVSPENNATMLPDYKVETPIALVFGTEWEGVSDELLDFADETL 159 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G K+ NVS AAA+ +Y + Sbjct: 160 AIPMYGFTKSFNVSVAAAICMYELKQKL 187 >gi|170699785|ref|ZP_02890818.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria IOP40-10] gi|171321115|ref|ZP_02910092.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria MEX-5] gi|172061809|ref|YP_001809461.1| RNA methyltransferase [Burkholderia ambifaria MC40-6] gi|313471799|sp|Q0BBL1|TRML_BURCM RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL gi|170135312|gb|EDT03607.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria IOP40-10] gi|171093605|gb|EDT38765.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria MEX-5] gi|171994326|gb|ACB65245.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria MC40-6] Length = 156 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 44/149 (29%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G ++R + P + A + ++ E+ Sbjct: 1 MFNVILVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + ++ + G+E +GL E Sbjct: 61 RDWDAFVAAEAPDPARMFAFTTRGSGRFHDHAFVPGDWFVFGSETRGLPADVLERFPNEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149 >gi|329930462|ref|ZP_08284002.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. HGF5] gi|328934840|gb|EGG31330.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. HGF5] Length = 187 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 3/151 (1%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N L +VL P N G I R+ A + ++ L ++ + Sbjct: 33 NMALHIVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFNTDDKTLKRAGLDYWYAVHIE 92 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TAT 249 + + + + + D L+ G E KGL P+ A Sbjct: 93 YHDSFEELQALYPEGRYFYATTKATKRYMD--IEYQDGDFLVFGKETKGLPPELLAANAE 150 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++LN+SN+AA+ +Y Sbjct: 151 HCIRMPMTDKVRSLNLSNSAAIMVYEALRQL 181 >gi|34499838|ref|NP_904053.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472] gi|34105688|gb|AAQ62042.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC 12472] Length = 154 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R C+ + P E A L ++ E+ + Sbjct: 1 MFTVVLFQPEIPPNTGNVIRLCANTGCELHLVKPMGFPLEDAKLRRAGLDYHEYARVVVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + L+ + ++ + G E +GL A Sbjct: 61 EDWDACLRTLQGRRIFAATTKG--ATRHDRISYQPGDVFLFGPESRGLPQDVLAALPAQQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SNA AV ++ Sbjct: 119 RIRLPMRPESRSLNLSNAVAVTVFEAWRQL 148 >gi|260184496|ref|ZP_05761970.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A] Length = 255 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 85/172 (49%) Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + + A+ P + LL+ LD+++DP N+GAI+RS AF G Sbjct: 4 NHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 63 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 ++ +R S S +AV ++++GA IP R +NLT L+ G + IGL + L+ Sbjct: 64 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 123 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 D + +++G+EGKGL ++ + + M ++LN S AA V L Sbjct: 124 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 175 >gi|242058639|ref|XP_002458465.1| hypothetical protein SORBIDRAFT_03g034180 [Sorghum bicolor] gi|241930440|gb|EES03585.1| hypothetical protein SORBIDRAFT_03g034180 [Sorghum bicolor] Length = 552 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 64/278 (23%), Positives = 110/278 (39%), Gaps = 52/278 (18%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-------------PFPVKTVP 97 +YGV V AAL R+ + L ++ + V Sbjct: 260 VYGVGPVLAALMARRREFYALYIQESMDLSGNNKKRKDKKAVEKVLRMAEEIGLKVIETS 319 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAI 150 ++ +V HQG+ L+ +PL + + + + LD + DP N+GAI Sbjct: 320 KHDLNMVVD-NRPHQGVVLDASPLEMVNIKELDPVRVEGGKAPVWIALDEIMDPQNLGAI 378 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +RSA F G+I + S S V++K+++G+LE I + N+ L G++ + Sbjct: 379 IRSAYYFGAQGVILCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVL 438 Query: 211 GLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMP------------ 257 G + +K E++ L++G+EG GLRP + + T + + Sbjct: 439 GGTIANKAVPLSEVEIGVPTILVMGSEGTGLRPLVERSCTHLVRIPGNVDVFVEGAGADA 498 Query: 258 -----GI-------------IKALNVSNAAAVALYITQ 277 G +++LNVS AA V LY Sbjct: 499 DAGEEGDSSSSNQDLRSFLAVESLNVSVAAGVLLYHLA 536 >gi|144897679|emb|CAM74543.1| tRNA/rRNA methyltransferase (SpoU) [Magnetospirillum gryphiswaldense MSR-1] Length = 248 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 79/233 (33%), Gaps = 9/233 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHP----FPVKTVPPQTIDK 103 + G+ V+A ++ +L K L P + + Sbjct: 9 IGGLPAVAALFQRDPGRVERLFFNDRMKAEAQPLCQQMAAARKPFRHVPTEELTKVAGTP 68 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + G T + + + + L++LD + +PHN+GAI R+ F +I Sbjct: 69 LHGGIVAVCQPKGLTPFEAVKSFNWAKAKEPLVILDGIGNPHNLGAIARTMAFFGLGRLI 128 Query: 164 TTKRYSPSESAVLAKSASGA--LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 + + + A + Y + + + L + Sbjct: 129 VSDHPEQALPSDAAFRIAEGGLEWVDVYQVANLGKALPRLKPHYQVIGTALGAHRSMKDT 188 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +AL+LG E +GL T + + G +++LNVS AA+ ++ Sbjct: 189 FSSNDKPLALVLGNEEEGLPATTLAACDDIVTIPGSGRVQSLNVSATAAILIH 241 >gi|149925625|ref|ZP_01913889.1| predicted rRNA methylase (SpoU class) [Limnobacter sp. MED105] gi|149825742|gb|EDM84950.1| predicted rRNA methylase (SpoU class) [Limnobacter sp. MED105] Length = 156 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 2/150 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G ++R + P E A + ++ E+ + Sbjct: 1 MINVVLVEPEIPPNTGNVIRLCANTGVQLHLVEPLGFPLEDARMRRAGLDYHEYANMLVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 L + + +++ K L+ G+E +GL + + + Sbjct: 61 PGWEAFLDRQQPNPQRCFAMTTKGKHSPFDVKFQAGDYLMFGSETRGLSEEVRNWFAREN 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN+ AV +Y Sbjct: 121 WLRLPMRPESRSLNLSNSVAVMVYEAWRQL 150 >gi|312792688|ref|YP_004025611.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179828|gb|ADQ39998.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 154 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 3/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P+N G I R+ + E L ++ +++ Sbjct: 1 MPINIVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKI 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250 +L D +K K+ Q D L+ G E GL E Sbjct: 61 YKDLNDFFEKNRGANIFYFSTKG--KQYYTQAPYEDNCYLMFGKETAGLPQWLIEQNIHR 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++LN+SN+ A+ LY Sbjct: 119 TYRIPMINDVRSLNLSNSVAIVLYEALRQL 148 >gi|297531654|ref|YP_003672929.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3] gi|297254906|gb|ADI28352.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3] Length = 247 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 5/161 (3%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + R + ++++ V+DPHN A+LR+A AF + +P L + Sbjct: 38 MYEVLNERTRYITVLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYAD 97 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + + A K + + P+ + AL+ G E G+ Sbjct: 98 QWLTLHHKPDIKTAIADLKSQGYQVYASY-FGEGTIPVSDIDLSQPTALLFGNEHSGVSE 156 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYI----TQNH 279 + A + M G +++ N+S AAA+ALY + Sbjct: 157 EALRLADGTFVIPMYGFVQSFNISVAAALALYDVTERARRQ 197 >gi|260547003|ref|ZP_05822742.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] gi|260096053|gb|EEW79930.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] Length = 242 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 101/236 (42%), Gaps = 10/236 (4%) Query: 45 QPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTI 101 + + G V L ++ + LL +N L L LP PV +VP + Sbjct: 3 RQQRFIAEG-KVVLNVLFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIM 61 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAF 157 D + G VH+G+ P L + L++VL +++ N+G+I R+A AF Sbjct: 62 DAVAGFH-VHRGILAVGRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAF 120 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 D ++ + + + GA +PY + D + GF + L+ + Sbjct: 121 EADCVLMDETCCDPLYRKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAP 180 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + ++ AL+LG EG+GL + E A + M +LNV+ A+ +AL Sbjct: 181 RSIYEATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASDIAL 235 >gi|251771304|gb|EES51885.1| TRNA/rRNA methyltransferase (SpoU) [Leptospirillum ferrodiazotrophum] Length = 259 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 60/258 (23%), Positives = 100/258 (38%), Gaps = 33/258 (12%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNA--------LARLDWDANLPHPFPVKTVPPQTIDKI 104 G H V L+ + L ++ R PV +P ID + Sbjct: 3 GFHPVMEVLSLRPDSVVHLYLREDRHGESRMDGRRREIIRVARSRGIPVDFLPGPAIDGL 62 Query: 105 VGKEAV--------------HQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVND 143 + V HQG+ L+ +D V D Sbjct: 63 FHRGQVSATASGGTGKGLPSHQGVVARIEEVATFPNLDDFLEASPGIAPSPLVAVDGVQD 122 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GA+LR+ A G++ +R S +AK+++GAL +P +RI NL+ +L+++ Sbjct: 123 PRNLGALLRTCDAAGVGGVLIPRRRVAPLSQTVAKTSAGALFTLPLVRIGNLSGSLRQLK 182 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G+ L E + + L++GAE KG+ + A L M G +++L Sbjct: 183 KEGYAIAALDLSGDPLPEGPLPGP-LVLVVGAEEKGVTRPVLDLADWRFRLPMKGKVQSL 241 Query: 264 NVSNAAAVALYITQNHFA 281 N+S AA + LY + Sbjct: 242 NLSVAAGIFLY---RQIS 256 >gi|150397809|ref|YP_001328276.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419] gi|150029324|gb|ABR61441.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419] Length = 275 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 93/249 (37%), Gaps = 12/249 (4%) Query: 41 RHTS---QPENLFLYGVHTVS--AALNNPSRKI--FQLLATKNALARLDWDAN-LPHPFP 92 + + G + AA ++ R I +L ++ + L P P Sbjct: 23 KERDLTGRQGRFIAEGTVVLRMLAAAHSARRGIAAEAILLLESRVFGLAELLAQFPPDVP 82 Query: 93 VKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 + D I G V + AP + + S L++ +++ N+G+ Sbjct: 83 LYVATSAVFDAIAGFNMHRGVLALGRRDAAPEQEALIAGLPQSSLVLAACGISNHDNMGS 142 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 + R+A AF D ++ + + G++ +P+ R + + ++ + F Sbjct: 143 LFRNAAAFGADAVLMDMASCDPMYRKAIRVSVGSVLTLPFAREGGAAELIGRLQAADFVV 202 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 GLS + + AL++G EG+GL A + + +LNV+ AA Sbjct: 203 WGLSPRGAVDITAIPPAPRTALLVGTEGEGLPEAILSQI-HTARIRQRPGLDSLNVAMAA 261 Query: 270 AVALYITQN 278 +AL+ N Sbjct: 262 GIALHQVAN 270 >gi|330807038|ref|YP_004351500.1| RNA-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375146|gb|AEA66496.1| Putative RNA-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 151 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G ++R C + + L ++ E+ R Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFDMDDKRLRRAGLDYHEYATLQRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 ++L L+ + ++ +P A + G E +GL + + A Sbjct: 61 ADLASCLES--LGHPRLFAFTTKGSRPFHDASFVAGDAFLFGPESRGLPAEVLDALPADQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AVA+Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|163784271|ref|ZP_02179188.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1] gi|159880460|gb|EDP74047.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1] Length = 131 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 31/59 (52%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +AL+LG+EGKG + A +A + M G I +LNV++A A+ ++ Sbjct: 64 HKLKFPFPLALVLGSEGKGTSKSILKLADIIATIPMKGKITSLNVASAGAIGMWEVSKQ 122 >gi|90419031|ref|ZP_01226942.1| putative RNA methylase [Aurantimonas manganoxydans SI85-9A1] gi|90337111|gb|EAS50816.1| putative RNA methylase [Aurantimonas manganoxydans SI85-9A1] Length = 297 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 51/261 (19%), Positives = 94/261 (36%), Gaps = 7/261 (2%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 S A + + ++ + + G + L + + LL +N Sbjct: 30 STIAIDDPSDPRVEPFRNVRDRDLVGREG--FIAEGTVVLDQLLVSRRFRPTSLLILRNR 87 Query: 78 LARLDWDANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQ 133 LA L P P+ D I G LA P+ + Sbjct: 88 LAGLAERLARFPGDAPIHVADQAVFDGIAGFAVHRGVLAHGAERGARPSAADTIAAAGGR 147 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++ +++ N+GAI R+A AF ++ + + G +P+ R Sbjct: 148 PIIIAVGLSNHDNLGAIFRNAAAFGAGAVLCDTTSCHPLYRKALRVSVGTALTVPWCREG 207 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + G++ + LS + PL + + AL LGAEG+GL P Sbjct: 208 TGESLVAACRAAGYRVLALSPAGETPLAGLVTAGRTALCLGAEGQGLSPDLMRAV-ETVR 266 Query: 254 LHMPGIIKALNVSNAAAVALY 274 + M + +LNV+ +AA+ L+ Sbjct: 267 IEMAPGLDSLNVATSAAIVLH 287 >gi|47458955|ref|YP_015817.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K] gi|47458283|gb|AAT27606.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K] Length = 231 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 101/237 (42%), Gaps = 24/237 (10%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 Q + G H V AL K+ + + + V Sbjct: 17 FRDQENFFIIEGFHLVEEALK------------KDIVVEIYASVEFKNAIKVSQ------ 58 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 I+ + ++ A ++ S+ ++VL+++NDP N+G ++RSA AF + Sbjct: 59 -SIIDSISSNKTSQPIIAICKKMNVNYEVKSKRILVLENINDPGNLGTLVRSAFAFGFND 117 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I + +++ GA ++ I++ N D L+ +H++ L SD+ + Sbjct: 118 VIVEG--VDIYNHKFLQASQGAFFYVNLIKVKNAVDFLKSLHNYQIYVTTLRSDAFEYDA 175 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 E +AL+LG E G+ + ++ A+ + ++ ++LNV++A A+ L +N Sbjct: 176 VENPKW-LALVLGNEANGISLEMEKLASKLIYIKT--NFESLNVASAGAILLNHFKN 229 >gi|260774703|ref|ZP_05883607.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio coralliilyticus ATCC BAA-450] gi|260609359|gb|EEX35510.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio coralliilyticus ATCC BAA-450] Length = 158 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 45/148 (30%), Gaps = 4/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193 + L N G I+R + + E + ++ + + + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKNY 63 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251 + F+ ++ + L+ G E +GL + E+ Sbjct: 64 QAFVEYLEKERQTFRIFACTTKTTGHHVDANFQQGDVLLFGPETRGLPAELIESMPMEQR 123 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 IRIPMMPDARSLNLSNAVAIIAFEAWRQ 151 >gi|260803697|ref|XP_002596726.1| hypothetical protein BRAFLDRAFT_241058 [Branchiostoma floridae] gi|229281985|gb|EEN52738.1| hypothetical protein BRAFLDRAFT_241058 [Branchiostoma floridae] Length = 309 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 44/305 (14%), Positives = 90/305 (29%), Gaps = 55/305 (18%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 ++K+ + + + + + L G + A+ L L Sbjct: 5 FRKLLATVKSKKRRDKEGLILLEGKRLIKDAIKAGGILESLFFCHVEDLEGLPLQETTAE 64 Query: 90 PFPVKTVPPQTI-DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + VK D + ++ + + L +P L ++ D++ DP N+G Sbjct: 65 LYKVKHKDILDWSDTVTPQKVIAIFTRPDVNRLYTPEYADAELLPLTLICDNIRDPGNMG 124 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK------- 201 I+RSA A C ++ TK + + ++ + A H+P I+ Sbjct: 125 TIIRSAAAAGCQKLLVTKGCVDVWESKVLRAGASAHFHLPIIKDLTWDLIPNYLEPDTVV 184 Query: 202 -------------------------------------------MHSWGFQTIGLSSDSKK 218 T + Sbjct: 185 FPADANVDVNNKFTLFHPPLSNVRRSVAARRRQTEDPDTSGDEDFRHDLPTSLPELVAVP 244 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL++G E +GL ++ +T + M + +LN + AA+V L+ Sbjct: 245 YYSTHWVGGSTALVVGGETEGLSLESLLLCEKTGGCRVFVPMLRNLDSLNSAVAASVVLF 304 Query: 275 ITQNH 279 + Sbjct: 305 EAKRQ 309 >gi|117923674|ref|YP_864291.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1] gi|117607430|gb|ABK42885.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1] Length = 174 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 2/149 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P N G I R A + ++A L ++ + + R Sbjct: 22 LHVVLYRPEIPPNTGNIQRICAATGAMLHLVGPIAFRLDNAALKRAGMDYRQWVDVQRYD 81 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-A 252 + +M G + I +S+ + + L+ G+EG GL + + Sbjct: 82 DW-AHCLRMQPLGVRWIPISTKATQGYHTMRYQAGDRLLFGSEGSGLPAEIHQALGHNAV 140 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M ++LN++N AV LY Sbjct: 141 RVPMLPRARSLNLANTVAVVLYEALRQLN 169 >gi|262273462|ref|ZP_06051276.1| tRNA (cytosine34-2'-O-)-methyltransferase [Grimontia hollisae CIP 101886] gi|262222440|gb|EEY73751.1| tRNA (cytosine34-2'-O-)-methyltransferase [Grimontia hollisae CIP 101886] Length = 188 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 45/166 (27%), Gaps = 4/166 (2%) Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 PL L S + L N G I+R A C + E L Sbjct: 19 YIRPLYCAFLFGESASMFHIALHEPQIAPNTGNIIRLAANTGCKLHLIEPLGFNFEEKKL 78 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 ++ H A + ++ +P + G+E Sbjct: 79 RRAGLDY--HDLTNITRYPDYATFLDAMGDRRIFACTTKGSRPHSDINYQAGDVFLFGSE 136 Query: 237 GKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 GL + + M ++LN++N+ +V Y Sbjct: 137 TSGLPDDIRNAFSPDHRIRVPMLPNNRSLNLANSVSVVCYEAWRQL 182 >gi|163748763|ref|ZP_02156015.1| RNA methyltransferase, TrmH family, group 2 [Shewanella benthica KT99] gi|161331537|gb|EDQ02342.1| RNA methyltransferase, TrmH family, group 2 [Shewanella benthica KT99] Length = 154 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R C + E L ++ + R Sbjct: 1 MFHIALYEPEIAPNTGNIIRLCANNGCQLHLIEPLGFDLEDKKLRRAGLDYADLTCVTRY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + L M +P + L+ G E +GL + E+ + Sbjct: 61 KDYASFLVAMAGRRIMACTTKG--SRPHSELSFEKGDVLLFGPETRGLPMEIIESLPTSQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G ++LN+SNA A+ Y Sbjct: 119 RLKIPMAGTSRSLNLSNAVAIISYEAWRQI 148 >gi|187927322|ref|YP_001897809.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J] gi|309779977|ref|ZP_07674731.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia sp. 5_7_47FAA] gi|187724212|gb|ACD25377.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia pickettii 12J] gi|308921336|gb|EFP66979.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia sp. 5_7_47FAA] Length = 156 Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G ++R + P E A + ++ E+ Sbjct: 1 MFNVILVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 ++ L+ + L++ P + G+E +GL + +E A+ Sbjct: 61 ADWDAFLRDAQPDPTRMFALTTRGSTPFASVAFQPGDWFVFGSETRGLSEERREWFPASQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149 >gi|260437718|ref|ZP_05791534.1| RNA methyltransferase, TrmH family, group 2 [Butyrivibrio crossotus DSM 2876] gi|292809741|gb|EFF68946.1| RNA methyltransferase, TrmH family, group 2 [Butyrivibrio crossotus DSM 2876] Length = 164 Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 D ++ G E G+ + + + M G I++LN+SN+ A+ LY Sbjct: 86 YTDVQYEDDCYIMFGKESAGIPESILQKYQDTAVRIPMWGDIRSLNLSNSVAIVLYEALR 145 Query: 279 H 279 Sbjct: 146 Q 146 >gi|190893165|ref|YP_001979707.1| RNA methylase [Rhizobium etli CIAT 652] gi|190698444|gb|ACE92529.1| probable RNA methylase protein [Rhizobium etli CIAT 652] Length = 274 Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 99/256 (38%), Gaps = 9/256 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYG---VHTVSAALNNPS-RKIFQLLATKNALARL 81 + + + ++ T + + G + ++ A + ++L +N +A + Sbjct: 12 DDPRVAEFRDIRER-DLTGREKRFIAEGTVVLRMLAEAHAEGRGFRAEKILLLRNRVAGI 70 Query: 82 DWDANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT--LDAVRNSQLLMVL 138 + P PV + IVG LAL +DA+ L++V Sbjct: 71 QPILDRFPADVPVYVAEADALAGIVGFHLHRGVLALGRREERDGAALVDALPERALVLVG 130 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198 +++ N G++ R+A AF D ++ + + + G++ +P+ R D Sbjct: 131 CGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYRKALRVSVGSVLRVPHRRGGKALDL 190 Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 L + GF LS K + ++AL++G EG+GL A + Sbjct: 191 LLALAERGFAIWTLSPHGKTDIRAIPAAARMALVVGTEGEGLPEALLARF-HSARIPQSD 249 Query: 259 IIKALNVSNAAAVALY 274 + +LN + A +AL+ Sbjct: 250 ELDSLNAATATGIALF 265 >gi|84495467|ref|ZP_00994586.1| putative rRNA methylase [Janibacter sp. HTCC2649] gi|84384960|gb|EAQ00840.1| putative rRNA methylase [Janibacter sp. HTCC2649] Length = 272 Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 46/261 (17%), Positives = 90/261 (34%), Gaps = 6/261 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + K++ + + R + + G + AL+ R + + L + Sbjct: 11 SPANPRLKQLVALRR-RRARDEARVTVVEGFEELGLALDAGVRPRTVFYSPELMLDAAEQ 69 Query: 84 DA----NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 V +K+ +E +AL + + +S LL+V + Sbjct: 70 LKVVDGARAAGVETIKVSRSAFEKVAYREGPDGFIALVPSVRAGLADLKLPSSPLLLVCE 129 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 + P N+GA+LR+A A D +I S + + L + + Sbjct: 130 GLEKPGNLGAMLRTADAAGVDAVIA-VDPVTDWGNPNVVRGSKGTVFSIPVASATLGETI 188 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + G + I + D++ +A+ +G E GL + A + M G Sbjct: 189 DWLREGGIRLIATTPDTETLHTDADLTGGVAIAVGTEKFGLTDEALRAADLRVRIPMHGQ 248 Query: 260 IKALNVSNAAAVALYITQNHF 280 + +LN S AAA+ +Y Sbjct: 249 VNSLNASAAAAIVVYEAVRQR 269 >gi|319403813|emb|CBI77397.1| RNA methyltransferase [Bartonella rochalimae ATCC BAA-1498] gi|319406821|emb|CBI80454.1| RNA methyltransferase [Bartonella sp. 1-1C] Length = 158 Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 49/149 (32%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L + L + N G ILR + F I L ++ LE R Sbjct: 1 MTLHIALFQPDIAGNTGTILRLSACFGLHVHIIEPAGFNLSDRNLKRAGMDYLERASLER 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + M + + + LS+ ++ + L+ G E G+ + A Sbjct: 61 HLDWQSFIDTMQRFNRRLLLLSTKAQTYYTEIYYQKNDVLLFGRESAGVPDYVYKAADYA 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN++ + A+ Sbjct: 121 LTIPMLPHARSLNLAISVAMVTGEALRQI 149 >gi|261254104|ref|ZP_05946677.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio orientalis CIP 102891] gi|260937495|gb|EEX93484.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio orientalis CIP 102891] Length = 158 Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 4/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193 + L N G I+R + + E + ++ + + + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251 + G++ ++ + L+ G E +GL + E+ Sbjct: 64 QAFVEYLEKEREGYRIFACTTKTTGHHVDANFQKGDVLLFGPETRGLPAELIESMPMEQR 123 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 IRIPMMPDARSLNLSNAVAIIAFEAWRQ 151 >gi|156843950|ref|XP_001645040.1| hypothetical protein Kpol_1072p52 [Vanderwaltozyma polyspora DSM 70294] gi|156115695|gb|EDO17182.1| hypothetical protein Kpol_1072p52 [Vanderwaltozyma polyspora DSM 70294] Length = 398 Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 54/327 (16%), Positives = 111/327 (33%), Gaps = 60/327 (18%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRH-TSQPENLFLYGVHTVSAALNNPS 65 K+ + + + + + + SR+ + P ++YG ++V AAL + Sbjct: 67 KEGRRSYEKHSAKEETQPPRQSFFDRPRRNANPSRYLQANPLLEYVYGTNSVLAALQSNK 126 Query: 66 RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ------------- 112 R+ F L +L + + + ++ + + Sbjct: 127 REYFTKLYYHGSLQPDIENLSKSRSVELVKTDKHNLNLLTKDAVHNNVVLETKPLKPIEI 186 Query: 113 ------GLALETAPLLSPTL-----------DAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 T + +L + + L + LD V DPHN+GAI+RSA Sbjct: 187 NNLETVNTEDCTFQITEQSLIKKTKSIGYISNENKKFPLGVYLDEVMDPHNVGAIIRSAY 246 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 D ++ +++ S + K++SG++E +P + QK G + S Sbjct: 247 FLGADFVVMSRKNCAPLSGTVNKTSSGSMELLPIYYVDKPLTFFQKSSEEGGWSFISSCI 306 Query: 216 SKKPLEQE-----------------IKNDKIALILGAEGKGLRPKTQETATSMAHLHM-- 256 + + ++ K + L++G E G+R + + + Sbjct: 307 TDDIISKDNKFIKNKMLSLEDLSGLCKEFPVVLVVGNENTGIRTNLRMRSDFYVEIPFGR 366 Query: 257 ----------PGIIKALNVSNAAAVAL 273 + +LNVS A A+ L Sbjct: 367 DSESDSNRQAISTVDSLNVSVATALLL 393 >gi|325299402|ref|YP_004259319.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM 18170] gi|324318955|gb|ADY36846.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM 18170] Length = 178 Score = 81.8 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 3/156 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + L++VLD V HNIGA+ R++ AF D I + + K+A GA Sbjct: 19 EFKEAKKIPLVVVLDDVRSLHNIGAVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAE 78 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLR 241 + + + DA+ ++ + G+ + + K A++LG E KG++ Sbjct: 79 YTVDWKYFQHTEDAVNELRTMGYTLFAIEQCEGSILLDKLVLEPDKKYAVVLGNEVKGVK 138 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + G +LNVS A + ++ Sbjct: 139 QEVVNLCDGCIEIPQFGTKHSLNVSVTAGIVIWEFA 174 >gi|313471791|sp|A1WBM9|TRML_ACISJ RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL Length = 162 Score = 81.8 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R A C + E ++ ++ E+ R Sbjct: 1 MFHIVLVEPEIPPNTGNVIRLAANTGCMLHLVEPLGFSMEDPLMRRAGLDYHEYAEVRRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 T L+ M + L++ + + + GAE +GL P+ +ET Sbjct: 61 PGWTALLRDMQPDLSRMFALTTHGTQSVYDTGFLPGDWFVFGAESRGLPPELRETFPPAQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV +Y Sbjct: 121 RLRLPMLPNQRSLNLSNAVAVTVYEAWRQ 149 >gi|222112034|ref|YP_002554298.1| tRNA/rRNA methyltransferase SpoU [Acidovorax ebreus TPSY] gi|221731478|gb|ACM34298.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax ebreus TPSY] Length = 162 Score = 81.8 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R A C + E ++ ++ E+ R Sbjct: 1 MFHIVLVEPEIPPNTGNVIRLAANTGCMLHLVEPLGFSMEDPLMRRAGLDYHEYAEVRRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 T L+ M + L++ + + + GAE +GL P+ +ET Sbjct: 61 PGWTALLRDMQPDLSRMFALTTHGTQSVYDTGFLPGDWFVFGAESRGLPPELRETFPPAQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV +Y Sbjct: 121 RLRLPMLPNQRSLNLSNAVAVTVYEAWRQ 149 >gi|121595834|ref|YP_987730.1| tRNA/rRNA methyltransferase SpoU [Acidovorax sp. JS42] gi|120607914|gb|ABM43654.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax sp. JS42] Length = 189 Score = 81.8 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R A C + E ++ ++ E+ R Sbjct: 28 MFHIVLVEPEIPPNTGNVIRLAANTGCMLHLVEPLGFSMEDPLMRRAGLDYHEYAEVRRH 87 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 T L+ M + L++ + + + GAE +GL P+ +ET Sbjct: 88 PGWTALLRDMQPDLSRMFALTTHGTQSVYDTGFLPGDWFVFGAESRGLPPELRETFPPAQ 147 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV +Y Sbjct: 148 RLRLPMLPNQRSLNLSNAVAVTVYEAWRQ 176 >gi|269955140|ref|YP_003324929.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM 15894] gi|269303821|gb|ACZ29371.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM 15894] Length = 272 Score = 81.8 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 95/278 (34%), Gaps = 30/278 (10%) Query: 22 KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81 K+ + + ++++++ S+ + + GV V+ A+ + + L+ Sbjct: 4 KISKRNARFQELEALLTNRSKRSRSGHFLVQGVRPVTLAVEHGWQVDAFCYEDGRRLSDW 63 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-TLDAVRNSQLLMVLDH 140 + + ++ K L + V L +VLD Sbjct: 64 ARGLLHRTGPEHYALSADLLAELAEKPEGEAELVAVVSVPDDDLDRVPVPADFLGVVLDR 123 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 P N+G+I+RSA AF G+I T + ++ +G+L +P +R + + L Sbjct: 124 PTQPGNVGSIIRSADAFGAHGVIVTGHGADPYDPRAVRATTGSLFAVPVVRAPSHREVLD 183 Query: 201 KMHSWGFQTIG-----LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 ++ +W D + + L++G E GL +E+A ++A + Sbjct: 184 QVAAWRAAGTPVTVVATDEDGDVDIAGVDLTGPVLLLVGNETAGLTRAWRESADAVASIP 243 Query: 256 MPGIIKALNVSNAAA------------VALYITQNHFA 281 M V LY + A Sbjct: 244 M------------VGAASSLNAANAASVVLYEARRQRA 269 >gi|196006305|ref|XP_002113019.1| hypothetical protein TRIADDRAFT_56739 [Trichoplax adhaerens] gi|190585060|gb|EDV25129.1| hypothetical protein TRIADDRAFT_56739 [Trichoplax adhaerens] Length = 246 Score = 81.8 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 54/154 (35%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R + +VL+ + + N AI R+ A A Sbjct: 64 NRTRSIAVVLEGITNEGNEQAIYRTMDALGFQTAHRIPSPLYRLKTCGRTDAGAMKWIDI 123 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 S Q S + K L+ ++K A++LG+E +G+ + Sbjct: 124 ESWKSTEECISQLKSCGYKILATSSENKTKTLDSFDFSNKTAVVLGSEQEGISKEAMNLV 183 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ++ + M G +++ NVS AAA+ LY + Sbjct: 184 DNVFRISMVGFVESYNVSVAAAIILYHIYQDRIR 217 >gi|326517717|dbj|BAK03777.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 351 Score = 81.8 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 1/148 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R+ + +V++ + D N+ A RSA A + + GA + + Sbjct: 151 RSYSVCLVVEGLTDFGNVSAAFRSADALGVQSVHVISCEDNKRYRDNRHVSMGAEKWLDI 210 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETA 248 S+ + + G++ S S ++ + A+++G E G+ + + Sbjct: 211 ELWSSPAECFDALKKRGYRIACTSLGSDSVSVYDMDWSHPTAIVVGNETMGISDVALKLS 270 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276 + M G++ + NVS AA + ++ Sbjct: 271 DMHCSVPMKGMVDSFNVSVAAGILMHHA 298 >gi|254470047|ref|ZP_05083451.1| rRNA Methylase [Pseudovibrio sp. JE062] gi|211960358|gb|EEA95554.1| rRNA Methylase [Pseudovibrio sp. JE062] Length = 151 Score = 81.8 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 52/144 (36%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + P N G +LR A + P L ++ +E R + Sbjct: 4 IALYQPDIPQNTGTLLRLAACMDVTVHLIEPAGFPLSDHALKRAGMDYIERAKLQRHMDW 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + + I +++ +P Q +++G E G+ + + A S + Sbjct: 64 ESFREWQLAEKRRLILMTTKGTRPYTQFAFKKDDLILMGRESSGVPEEIHQLADSRLLIP 123 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 M +++LN++ + + L Sbjct: 124 MKNGMRSLNMAVSTGMVLGEALRQ 147 >gi|107023784|ref|YP_622111.1| RNA methyltransferase TrmH, group 2 [Burkholderia cenocepacia AU 1054] gi|105893973|gb|ABF77138.1| RNA methyltransferase TrmH, group 2 [Burkholderia cenocepacia AU 1054] Length = 168 Score = 81.8 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 2/145 (1%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 P N G ++R + P + A + ++ E+ + Sbjct: 17 FSSPPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVHRDWD 76 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHL 254 + + ++ + G+E +GL + E L Sbjct: 77 AFVAAETPDPARMFAFTTRGSGRFHDHAFLSGDWFVFGSETRGLPAELLERFPNEQRVRL 136 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 M ++LN+SN AV ++ Sbjct: 137 PMRPDNRSLNLSNTVAVVVFEAWRQ 161 >gi|119192340|ref|XP_001246776.1| hypothetical protein CIMG_00547 [Coccidioides immitis RS] Length = 495 Score = 81.8 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 63/308 (20%), Positives = 100/308 (32%), Gaps = 77/308 (25%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-------WDANLPHPFPVKTVPPQT 100 + F+YG H V +A+ RKI+ L + +L + VK V + Sbjct: 138 SEFIYGFHPVRSAIRAGRRKIYALYLCERPTNQLSGSGLNSLQKLAVTAGAKVKIVSSEW 197 Query: 101 IDKIVGKEA--VHQGLALET---------------------------------------- 118 + HQG+ E Sbjct: 198 SQALSRVCKEVNHQGIVAEVSPLPKLPALSYEQVASLPVTNFNVKVAPQSKEEAAVNGTS 257 Query: 119 ----------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 ++LD + DPHN+GAILRSA F D + + R Sbjct: 258 GLIPLTSLRQNSYDDHRTQHNPRYPFTLLLDGIVDPHNLGAILRSAYYFGADAVAFSSRN 317 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-- 226 S S V+ KS+SGA EHIP I I + + G++ + + + KN Sbjct: 318 SAPLSPVVMKSSSGAAEHIPLISIHDTVSFIDASRRNGWRFFAAEPPASVAPDSKNKNIV 377 Query: 227 -----------DKIALILGAEGKGLRPKTQETATSMAHLH-----MPGIIKALNVSNAAA 270 L+LG EG GL + + A + + + + +LNV+ A+ Sbjct: 378 SSKNLPNELQNYPCVLMLGNEGDGLSKELKSKADASVVVDCPRKHIVDEVDSLNVAVASG 437 Query: 271 VALYITQN 278 + Sbjct: 438 ILCQAFMR 445 >gi|328950187|ref|YP_004367522.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis DSM 14884] gi|328450511|gb|AEB11412.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis DSM 14884] Length = 159 Score = 81.8 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 2/144 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N+G I R+ A + + + ++ H+ Y+ Sbjct: 10 VVLYQPEIPQNVGNIARTCAAVGAELHLVRPFGFRWGDPRMKRAGLDYWPHVRYVLHDTW 69 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 L+ + + ++ E L+ G E +GL P+ E + + Sbjct: 70 AAFLETLGPQDRLFAFTTKGERRYTEVA-YRPGDYLLFGPETRGLPPEILEVWPRLV-IP 127 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 MPG +++LN+S A VA+Y Sbjct: 128 MPGPVRSLNLSVAVGVAVYEALRQ 151 >gi|126642632|ref|YP_001085616.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 205 Score = 81.8 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 75/201 (37%), Gaps = 10/201 (4%) Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 + + + H F + V + + + + + L++ + Sbjct: 14 KKIIELHQGHVFIISEVLYKDLSTL----GNTLPCLGIIDLPKTASTIDYSVDTLIL--E 67 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 +V DP N+G +LRSA A + II T+ + S + ++ GA + LTD L Sbjct: 68 NVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDIL 127 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 K F T S S + + ILG EG+G E A + PG Sbjct: 128 PKFDIPVFVTSSHRSTSLYSKD---LSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGG 183 Query: 260 IKALNVSNAAAVALYITQNHF 280 ++LNV+ A ++ + Sbjct: 184 QESLNVAIAGSICFFEMVRQR 204 >gi|187922547|ref|YP_001894189.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia phytofirmans PsJN] gi|187713741|gb|ACD14965.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia phytofirmans PsJN] Length = 156 Score = 81.8 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A L ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKLRRAGLDYHEYAQMNVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 ++ + K + ++ + + GAE +GL + Sbjct: 61 ADWAAFVAKESPDPARMFAFTTRGSGRFHEHAFQSGDWFVFGAETRGLPDSVLDQFANQQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN A+ ++ Sbjct: 121 RVRLPMRPGNRSLNLSNTVAIVVFEAWRQ 149 >gi|32472821|ref|NP_865815.1| SpoU rRNA methylase family [Rhodopirellula baltica SH 1] gi|32444058|emb|CAD73500.1| spoU rRNA Methylase family [Rhodopirellula baltica SH 1] Length = 177 Score = 81.8 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 3/145 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ VA I + L ++ +++ + + + Sbjct: 28 VVLYQPEIPQNTGNIGRTCVAVGAKLWIVEPASFQFDEKRLRRAGLDYWQYLDWEPVPSW 87 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-SMAHL 254 ++++ F + L+ G E GL + L Sbjct: 88 DALCERLNPERFFFFSKFAKRTVWE--AEFALGDVLVFGRETSGLPASILKPDDPRSLRL 145 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 M +++LN+S A +ALY Q Sbjct: 146 PMREQVRSLNLSVTAGIALYEHQRQ 170 >gi|54307450|ref|YP_128470.1| rRNA methylase [Photobacterium profundum SS9] gi|46911870|emb|CAG18668.1| putative rRNA methylase, SpoU family [Photobacterium profundum SS9] Length = 159 Score = 81.8 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 43/155 (27%), Gaps = 4/155 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + L N G I+R D + E L ++ + Sbjct: 1 MFSKLMFDIALYEPEIAPNTGNIIRLCANCGADLHLIEPLGFDLEEKKLRRAGLDYHDLA 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 R + + M + + LI G E +GL E+ Sbjct: 61 HVHRHKDFAAFKEAMAGRRLFACTTKT--TNYHTNAQFAEGDVLIFGPETRGLPADFIES 118 Query: 248 A--TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNAAA+ Y Sbjct: 119 LPLEQRLRIPMHPDSRSLNLSNAAAIIGYEAWRQL 153 >gi|298492795|ref|YP_003722972.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708] gi|298234713|gb|ADI65849.1| RNA methyltransferase, TrmH family, group 2 ['Nostoc azollae' 0708] Length = 153 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 1/146 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL + P N G I R+ A + + L ++ ++ ++ Sbjct: 4 IVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYHESM 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 G + +G + L+ G+E GL T S ++ Sbjct: 64 EAFQTIHQQRGGRLLGFTVRGSFNYINYQFQADDWLLYGSETTGLPATVLSTCDSTLYIP 123 Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280 + +++LN+S + A+ L+ ++ Sbjct: 124 IDEPGVRSLNLSISVAIGLFESRRQL 149 >gi|254508192|ref|ZP_05120317.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus 16] gi|219548914|gb|EED25914.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus 16] Length = 158 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 46/148 (31%), Gaps = 4/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193 + L N G I+R + + E + ++ + + + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251 + ++ ++ + + L+ G E +GL + E+ Sbjct: 64 QAFVEYLEKERGDYRIFACTTKTTGHHVDANFHKGDVLLFGPETRGLPAELIESMPMEQR 123 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 IRIPMMPDARSLNLSNAVAIIAFEAWRQ 151 >gi|325285057|ref|YP_004260847.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489] gi|324320511|gb|ADY27976.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489] Length = 219 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 1/158 (0%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + R + + + ++ V HN A++RS AF + + Sbjct: 24 DILKDRTNYITVAIEDVFQMHNTSAVIRSCDAFGVQTAHLIESKYSEPLDKNIAMGAQQW 83 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 P + + + +D L+ +DKIAL G E GL + Sbjct: 84 VTTPRYNTTTECIDTLRKDGYKIIATSPHTD-SYLLDDFKIDDKIALFFGTEKSGLSQEV 142 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + A + M G ++LN+S +AA+ L K Sbjct: 143 LDKADGYVKIPMVGFSESLNISVSAAILLQHLTTELKK 180 >gi|150009602|ref|YP_001304345.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|256838324|ref|ZP_05543834.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13] gi|262383110|ref|ZP_06076247.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_33B] gi|149938026|gb|ABR44723.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|256739243|gb|EEU52567.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13] gi|262295988|gb|EEY83919.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_33B] Length = 176 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 68/159 (42%), Gaps = 3/159 (1%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + L++VLDH+ +N+G++ R++ AF + I + +A + K+A GA E Sbjct: 17 FKESKKIPLIVVLDHIRSLNNVGSVFRTSDAFRVEAIYLCGITACPPNAEIHKTALGAEE 76 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRP 242 + + + +A+ K+ G+ + + K K A+++G E KG++ Sbjct: 77 TVDWEYFKDTPEAVDKLRQEGYTVCAVEQAEGSVMLDNLQLDKTKKYAIVMGNEVKGVQQ 136 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + G +LNVS + ++ + Sbjct: 137 NVVDNCDICIEIPQYGTKHSLNVSVTTGIVIWDFFKQLS 175 >gi|332764147|gb|EGJ94384.1| spoU rRNA Methylase family protein [Shigella flexneri 2930-71] Length = 206 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +++G E G+ + A + M G++++LNVS A+A+ LY Q Sbjct: 87 YTRPTCILMGQEKTGITQEALALADQDIIILMIGMVQSLNVSVASALILYEAQRQR 142 >gi|195377529|ref|XP_002047541.1| GJ13500 [Drosophila virilis] gi|194154699|gb|EDW69883.1| GJ13500 [Drosophila virilis] Length = 354 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 24/274 (8%), Positives = 60/274 (21%), Gaps = 49/274 (17%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + + +L + + + + + + + G + AL + + ++ Sbjct: 117 NLEFTRLTLQDPLMSTLLTEVRSRKRRDNNKQIIIEGRRLIEEALQCRLKMHSLFFSQRD 176 Query: 77 ALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 LA L + VP + + V + Sbjct: 177 QLALLRERVAQAQQEDNTKIYKVPQHDLKTWSRCQVVVTHGCCDPW-------------- 222 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 LR I + + Sbjct: 223 -------------ESKALRGGCGGQFRLPIHDDVTWEQLPLHIPPEVADHCHVFIAENNP 269 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT---- 249 + L + + LI+G E G+ + Sbjct: 270 KKPENLAGNTVDYAEVGQTGVHN-------------ILIIGGESHGVSEDAYKFMQLVGS 316 Query: 250 --SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + + +LNV +A + L+ + Sbjct: 317 RGKCVYIPLAAGMDSLNVVSALTLILFELRKKLT 350 >gi|253699560|ref|YP_003020749.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. M21] gi|251774410|gb|ACT16991.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. M21] Length = 158 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 K G + + S + K ++ G E KGL + Sbjct: 56 YWSEVEIHYWPDLPALKQAYPGGRFVYTSKKADKSYLAFTFLPGDFIVFGKETKGLPEEL 115 Query: 245 QE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E A + + +PG +++LN+S +A + LY Sbjct: 116 IEANAQTAVRIPIPGKVRSLNLSTSAGIVLYEALRQ 151 >gi|187736063|ref|YP_001878175.1| tRNA/rRNA methyltransferase (SpoU) [Akkermansia muciniphila ATCC BAA-835] gi|187426115|gb|ACD05394.1| tRNA/rRNA methyltransferase (SpoU) [Akkermansia muciniphila ATCC BAA-835] Length = 154 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMPG-IIKALNV 265 Q LS+ + + + + L+ G E +GL +E A + + MPG ++LN+ Sbjct: 78 QFWYLSTKAPRSHWDAVFHAGDYLVFGPESRGLPESMLREHADTALTIPMPGEGARSLNL 137 Query: 266 SNAAAVALYITQNH 279 S A AV LY Sbjct: 138 STAVAVVLYEGLRQ 151 >gi|254571825|ref|XP_002493022.1| Ribose methyltransferase [Pichia pastoris GS115] gi|238032820|emb|CAY70843.1| Ribose methyltransferase [Pichia pastoris GS115] Length = 397 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 62/319 (19%), Positives = 118/319 (36%), Gaps = 48/319 (15%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-PENLFLYGVHTVSAAL 61 + K+ + + + K + D +++R + P ++G V AAL Sbjct: 74 HVHAKQKQVRLDKEAARTQKFPSRNSDLSPDSKQIRRNRPPKENPLEERIFGAQAVLAAL 133 Query: 62 NNPSRKIFQLLATKNALARLDW--DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 +R+ L N + + + +K V + ++ VH G L+ A Sbjct: 134 KANNREFLSTLYVHNPKEKHEEITELCKERGVDIKLVDSKNDLNLLCNNNVHNGYVLKAA 193 Query: 120 PLLSPTLDA------------------------------VRNSQLLMVLDHVNDPHNIGA 149 + L A + L + +D V+DPHN+GA Sbjct: 194 KFQTRELAALSTVTSKGVFSLTLQDYGVRSEEQFEVQRLNGSFPLGVYIDGVSDPHNLGA 253 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 I+RS+ D + ++ ++V +KS++G +E +P + L+ + G+ T Sbjct: 254 IIRSSYYLGADFVAIAEKNCAPLNSVASKSSAGCMEFLPIFNVVKPLQFLEAANENGWAT 313 Query: 210 IGLSSDSKKPLEQEIK----------NDKIALILGAEGKGLRPKTQETATSMAHL----- 254 + S K LI+G+EG G+R + ++ + L Sbjct: 314 VSAVSSVPKKNANRELLSEELSSTLSEQPCLLIVGSEGDGIRKSLLDRSSHLVSLKSQRK 373 Query: 255 HMPGIIKALNVSNAAAVAL 273 ++ + +LNVS A AV L Sbjct: 374 NLDSSVDSLNVSVATAVLL 392 >gi|56421995|ref|YP_149313.1| rRNA methylase [Geobacillus kaustophilus HTA426] gi|56381837|dbj|BAD77745.1| rRNA methylase [Geobacillus kaustophilus HTA426] Length = 247 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 5/161 (3%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + R + ++++ V+DPHN A+LR+A AF + +P L + Sbjct: 38 MYEVLNERTRYITVLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYAD 97 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + + A K + L + P+ + AL+ G E G+ Sbjct: 98 QWLTLHHKPDIKTAIADLKSQGYQVYASYLGEE-TIPVSDIDLSQPTALLFGNEHSGVSE 156 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYI----TQNH 279 + A + M G +++ N+S AAA+ALY + Sbjct: 157 EALRLADGTFVIPMYGFVQSFNISVAAALALYDVTERARRQ 197 >gi|297182173|gb|ADI18344.1| rRNA methylases [uncultured actinobacterium HF4000_04C13] Length = 172 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 25/55 (45%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K L G E +GL T +A + G + +LNVS AA +ALY Sbjct: 116 LPEKACLAFGHEDRGLSATTLAACDVVAFIPQLGKVGSLNVSTAAGIALYELNRR 170 >gi|282864224|ref|ZP_06273280.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE] gi|282560711|gb|EFB66257.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE] Length = 274 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 11/245 (4%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + R G + A N +L K + D Sbjct: 17 DYTDLTDVELRRRREPAEGLFIAEGEKVIRRARNAGYEMRSMMLTAK--WFDVMRDVIDE 74 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVND 143 PV V P+ +++ G VH+G P +D + + + V + + D Sbjct: 75 ERAPVYAVTPELAERVTGYH-VHRGALAAMRRRPLPAVDTLLAPATGDVRRVAVFEDIVD 133 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+GA R+A A D ++ T R + K + G++ H+P+ R+ + D L + Sbjct: 134 HANLGAAFRNAAALGVDAVLLTPRCADPLYRRAVKVSMGSVFHVPWTRLESWPDDLALLG 193 Query: 204 SWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + GF T L + ++K+ALI G EG GL + A + + M + Sbjct: 194 AAGFTTAALCLSDRSITLDALVARAHEKLALIFGTEGDGLTAQALAAADAHVRIPMDAGV 253 Query: 261 KALNV 265 +LNV Sbjct: 254 DSLNV 258 >gi|225420403|ref|ZP_03762706.1| hypothetical protein CLOSTASPAR_06748 [Clostridium asparagiforme DSM 15981] gi|225040954|gb|EEG51200.1| hypothetical protein CLOSTASPAR_06748 [Clostridium asparagiforme DSM 15981] Length = 169 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I R+ VA + + ++ + + Sbjct: 1 MMNVVLLEPEMPANTGNIGRTCVATGTRLHLIEPLGFKLSEKAIKRAGLDYWDKLDVQVY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 ++ D L + ++ + + + L+ G E G+ + Sbjct: 61 ADYQDFLDRNPQAKGNLYFATTKAHQLYTEPAYRPDCYLMFGKESAGIPEEILVANEPYC 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G I++LN+SN+ ++ LY Sbjct: 121 VRIPMWGEIRSLNLSNSVSIVLYEALRQ 148 >gi|85060160|ref|YP_455862.1| putative RNA methyltransferase [Sodalis glossinidius str. 'morsitans'] gi|84780680|dbj|BAE75457.1| putative RNA methyltransferase [Sodalis glossinidius str. 'morsitans'] Length = 155 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFHLHIIQPLGFTWDDKRLRRAGLDY--HEFAAIR 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + A + + L++ + L+ G E +GL P + T Sbjct: 59 HHRDYAAFLAQAQQARLFALTTKGQPAHSAVRYQAGDYLLFGPETRGLPPSILDALPMTQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMQPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|255013118|ref|ZP_05285244.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7] gi|298373994|ref|ZP_06983952.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_19] gi|301311793|ref|ZP_07217718.1| RNA methylase, SpoU family [Bacteroides sp. 20_3] gi|298268362|gb|EFI10017.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_19] gi|300830353|gb|EFK60998.1| RNA methylase, SpoU family [Bacteroides sp. 20_3] Length = 176 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 68/159 (42%), Gaps = 3/159 (1%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + L++VLDHV +N+G++ R++ AF + I + +A + K+A GA E Sbjct: 17 FKESKKIPLIVVLDHVRSLNNVGSVFRTSDAFRVEAIYLCGITACPPNAEIHKTALGAEE 76 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRP 242 + + + +A+ K+ G+ + + K K A+++G E KG++ Sbjct: 77 TVDWEYFKDTPEAVDKLRQEGYTVCAVEQAEGSVMLDNLQLDKTKKYAIVMGNEVKGVQQ 136 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + G +LNVS + ++ + Sbjct: 137 NVVDNCDICIEIPQYGTKHSLNVSVTTGIVIWDFFKQLS 175 >gi|156365597|ref|XP_001626731.1| predicted protein [Nematostella vectensis] gi|156213618|gb|EDO34631.1| predicted protein [Nematostella vectensis] Length = 301 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 59/295 (20%), Positives = 116/295 (39%), Gaps = 41/295 (13%) Query: 6 KKKSEKIFSLK----DSHYAK--LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59 +++ + K D H + L R+H + ++ + + TS ++G+ Sbjct: 15 SSRNQSFINGKCGWIDIHQLRYILTRHHSGSTRYETKSTRKSGTSSRREF-IFGIGPCVL 73 Query: 60 ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 AL++ RK+F++ + A + L FPV + ++ Sbjct: 74 ALSSGRRKVFKIYMNEEAN---NTTRILLWKFPVSI----------------FVILMKRM 114 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L++ LD + DP N GAI+R++ D I+ K+ S S V++K+ Sbjct: 115 MSYKGINHIASLHPLVLALDEIQDPMNFGAIIRTSWLLGVDKIVVPKQNSAPLSPVVSKA 174 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-------SDSKKPLEQEIKNDKIALI 232 ++GA+E + +L LQ+ + G+ +G + + L+ Sbjct: 175 SAGAMEVFNVYQTPDLPKFLQERAAIGWDVLGAVQPITDDSHHRPVNCAEYSLSKPTVLV 234 Query: 233 LGAEGKGLRPKTQETATSMAHL-HMPGI-------IKALNVSNAAAVALYITQNH 279 LG EG+GLR Q+ T + + + + NVS AA + ++ + Sbjct: 235 LGNEGRGLRNTVQQQCTQLLSIYPHQAQNSFQSIDLDSFNVSVAAGILVFSLLKN 289 >gi|261325606|ref|ZP_05964803.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33] gi|261301586|gb|EEY05083.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33] Length = 171 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 1/164 (0%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 D +L + L + P N G ILR + L ++ Sbjct: 1 MQPCGFHDTGFPMELRVALYQPDIPGNTGTILRMVACLGFAVDLIEPAGFDISDRALKRA 60 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 LE R + + G + + LS+ + P + L+ G E G Sbjct: 61 GMDYLEQAALTRHPDWNCFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAG 120 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282 + + A + M ++LN++ + A+ +K Sbjct: 121 VPEAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 164 >gi|189500046|ref|YP_001959516.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides BS1] gi|189495487|gb|ACE04035.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides BS1] Length = 180 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 2/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + ++L ++ +N+G++ R+A A D +I T + + K+A GA E + + Sbjct: 25 QKHPVTVLLHNIRSMYNVGSVFRTADAAGIDRLIITGYTATPPRKEIDKTALGAQESVDW 84 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQET 247 ++ + L + G GL +IK D + LILG E G+ + Sbjct: 85 EYYTHPEEILGVLKDSGVTICGLEITENSRPYTDIKKDDFPLCLILGNEVDGIDDDVLQF 144 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + G +LNVS AA VALY Sbjct: 145 CDHVFEIPQYGTKHSLNVSVAAGVALYEMVK 175 >gi|183221112|ref|YP_001839108.1| TrmH family tRNA/rRNA methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167779534|gb|ABZ97832.1| Putative tRNA/rRNA methyltransferase, trmH family [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 233 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 100/224 (44%), Gaps = 10/224 (4%) Query: 60 ALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 A + I +++ LP+ TV + +D+I + + + Sbjct: 2 APERGIKTIREVIVKDGIGNEEKQRIKAYLPNSVKFTTVSARELDRIAQDKNHQGYVIIR 61 Query: 118 TAPLLSPTLDAVRNSQLL-------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 T +L + Q + ++LD + DP N+G +LR+A ++ + R + Sbjct: 62 TKQKSYLSLGFEQFKQNIKPNEGPVLILDRIQDPGNLGNLLRTAECMGVKHVLMSDRDTS 121 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKI 229 + V+ K ++GA+ HI R++NL + + + + + ++ + + + + ++ Sbjct: 122 PITPVVEKVSAGAIHHIQIYRVANLKHGIDFLKKNEYWILATDEEGEEGIWETLPDVSQM 181 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 A+I+G EG+G++ E A +A + + G + +LNV A + L Sbjct: 182 AVIMGNEGEGVKRILLEDADYVARIPLYGAVTSLNVVVACGITL 225 >gi|312797395|ref|YP_004030317.1| 23S rRNA methyltransferase [Burkholderia rhizoxinica HKI 454] gi|312169170|emb|CBW76173.1| 23S rRNA methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454] Length = 200 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 47/151 (31%), Gaps = 2/151 (1%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 +S +VL P N G I+R + P + A + ++ E+ Sbjct: 43 HSMFNVVLVEPEIPPNTGNIIRLCANTGATLHLVEPLGFPLDDAKMRRAGLDYHEYAQMR 102 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--A 248 + + L + ++ + GAE +GL + Sbjct: 103 VHQDWSTLLATQQPDPARMFAFTTRGSSMFGDRAFQPGDWFVFGAETRGLCDTVLQHFAV 162 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 163 DQRVRLPMRAGNRSLNLSNTVAVVVFEAWRQ 193 >gi|170743299|ref|YP_001771954.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46] gi|168197573|gb|ACA19520.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46] Length = 269 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 87/234 (37%), Gaps = 7/234 (2%) Query: 45 QPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + G V L + +I +L + LA L PV P + Sbjct: 29 RRGRFVAEGE-VVLRVLLSGRARFRIESVLLSPERLASLRPALAALTDAPVYLAPRAVMS 87 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + G +H+G+ +P + LL+ L + + N+G + R+A AF D Sbjct: 88 ALAGFP-IHRGVLAIGRSGETPPAESLVPPGPALLLGLVGLANHDNVGGLFRNAAAFGAD 146 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ + ++G +P+ R+ + L G + L+ + + Sbjct: 147 AVLLDAATCDPLYRKAIRVSAGTCLTLPFARLPDGEALLALCERHGIVPLALTPGGGEEI 206 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q + L+LG EG GL A + M + +LNV+ A AVAL+ Sbjct: 207 AQLPPLPRAMLLLGTEGTGLPDALMARA-RRVRIAMAPGVDSLNVAAAGAVALH 259 >gi|94986499|ref|YP_594432.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00] gi|94730748|emb|CAJ54110.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00] Length = 290 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 87/234 (37%), Gaps = 12/234 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVG 106 L G+ V + +KI + K ++ D + +++ Sbjct: 47 ILSGIKPVLDLIEKEPQKIDTIFLQKGLCSKEYQKVLDLCRQTNIRFIFTTSKVLNRFC- 105 Query: 107 KEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 HQG+ L+ L++V D + DP N G I+R+ + Sbjct: 106 -LTNHQGIVARLFESGFIELEDLFDKVPDAPLPLIVVFDQIQDPGNAGTIIRTLYSLGGA 164 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKP 219 G+I K ++A G LE +P + NL+ A++ + K Sbjct: 165 GVIIPKHNGVFLGQDARRAAVGCLERLPISKAINLSRAIETANEKGFHIYGTSIEKDSKN 224 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + LILG+E G+R + ++ ++ H+ M + +LNV+ A + + Sbjct: 225 VFEAELKFPALLILGSEKSGIRLQLKKRCHTILHIPMVRDVNSLNVAQAGGIII 278 >gi|307546981|ref|YP_003899460.1| tRNA/rRNA methyltransferase YibK [Halomonas elongata DSM 2581] gi|307219005|emb|CBV44275.1| putative tRNA/rRNA methyltransferase YibK [Halomonas elongata DSM 2581] Length = 162 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G ++R + + L ++ H Sbjct: 1 MLDVVLFQPEIPPNTGNLIRLCANTGFRLHLIEPLGFELDDKRLRRAGLDY--HEWARVR 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + +S+ + + AL+ G E +GL + Sbjct: 59 VHRDWDAFIEAVSPRRVFAVSTRGRTGYHEPAYGPGDALVFGPETRGLPQAMLDALPEAQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ +Y Sbjct: 119 RLRIPMLPESRSLNLSNACAILVYEAWRQL 148 >gi|83764572|dbj|BAE54716.1| unnamed protein product [Aspergillus oryzae] Length = 495 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 68/345 (19%), Positives = 113/345 (32%), Gaps = 78/345 (22%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 K+ + H A R R K+ +T+ +YG V AAL Sbjct: 134 QDKRHSRRAEPTKHHRATERVPER-VKENVQVPDAIPYTTPASEF-IYGTSAVEAALRCS 191 Query: 65 SRKIFQLLATKNALARLD------WDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLAL 116 R +++L + + L L VK + + H G L Sbjct: 192 RRHMYKLYVYQASGEELSSAKVALRKLALSKNVKVKMAFGGWDRLLDKMSAGRPHNGCVL 251 Query: 117 ETAPLLS----------------------------------------PTLDAVRNSQLLM 136 E +PL D +++ Sbjct: 252 EASPLPRLPVRGLKSVPSIKEEDFGVELGAQSREEALVNSTNDKLKIHHWDQRTRYPVVL 311 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +LD + DP N+GAI+RSA D II R S S V K+++GA E++ + +SN Sbjct: 312 LLDGIVDPGNLGAIIRSAYYLGVDAIIFAGRNSAPLSPVTIKASAGAAENMTLLEVSNEV 371 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLE----------------QEIKNDKIALILGAEGKGL 240 D +Q+ + G++ + +++G+EG GL Sbjct: 372 DFIQRSKANGWKFYAADAPGPASKYVDTASIVEGKGTTEGEHVSTQSPCVIMMGSEGSGL 431 Query: 241 RPKTQETATSMAHLHM------------PGIIKALNVSNAAAVAL 273 + A S+ + P + +LNVS AAA+ + Sbjct: 432 SRHIKSHADSIVSIPGARLATPLGVESDPSRVDSLNVSVAAALLM 476 >gi|302390100|ref|YP_003825921.1| RNA methyltransferase, TrmH family, group 2 [Thermosediminibacter oceani DSM 16646] gi|302200728|gb|ADL08298.1| RNA methyltransferase, TrmH family, group 2 [Thermosediminibacter oceani DSM 16646] Length = 160 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 3/148 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I R+ A + E L ++ + Sbjct: 1 MFHIVLVEPEIPQNTGNIARTCAATGAVLHLVGPLGFSLEDRYLKRAGLDYWHLVDVRYY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSM 251 SN ++ +K + + +K I L+ G E GL + + Sbjct: 61 SNYSEFEEKNRGMPMFFLTTKA--EKCYTDVIYEPGSYLVFGKETAGLPLELLKANWERC 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNAAA+ LY Sbjct: 119 VRIPMVDDARSLNLSNAAAIVLYEALRQ 146 >gi|313904349|ref|ZP_07837727.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6] gi|313470899|gb|EFR66223.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6] Length = 163 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 3/150 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + +VL P N G I R+ VA + ++ ++ + + Sbjct: 1 MAHFHIVLHEPEIPANTGNIGRTCVAAGASLHLIEPLGFRLNEKMIRRAGMDYWDQLDVT 60 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R + D + + + + D ++ G E G+ + + Sbjct: 61 RYVDYEDFMSQHPGAKIYYASTKA--SRNYTDVSFEDDCYIMFGKESAGIPEEILRENDA 118 Query: 251 M-AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+ N+ A+ LY Sbjct: 119 TAIRIPMSPDIRSLNLGNSVAIVLYEALRQ 148 >gi|306843106|ref|ZP_07475728.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO2] gi|306286711|gb|EFM58264.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO2] Length = 171 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 1/164 (0%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + D +L + L + P N G ILR A + L ++ Sbjct: 1 MQPAGFHDTGFPMELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRA 60 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 LE R + + G + + LS+ + P + L+ G E G Sbjct: 61 GMDYLEQAALTRHPDWHCFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAG 120 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282 + + A + M ++LN++ + A+ +K Sbjct: 121 VPEAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 164 >gi|78187117|ref|YP_375160.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium luteolum DSM 273] gi|78167019|gb|ABB24117.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium luteolum DSM 273] Length = 219 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 1/152 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +V+D+VN PHN+ A++RS A + + +A + + Sbjct: 17 RQPDLTVVMDNVNKPHNLSALIRSCDAVGIHDLHAVSKQRSI-HTRQHAAAGSSRWTRLH 75 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + + A+ILGAE G+ + A Sbjct: 76 LWHEIKEPCSALRREGMQLLAATNVAAAVDFREIDYTLPTAVILGAEWDGVSKEAIGEAD 135 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + G++++LNVS AAAV L+ + + Sbjct: 136 RTIMVQTHGMVESLNVSVAAAVILFEAERQRS 167 >gi|302339393|ref|YP_003804599.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM 11293] gi|301636578|gb|ADK82005.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM 11293] Length = 163 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 3/152 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + + L +VL P N G I R+ A D + + L ++ + Sbjct: 1 MSDMDLHIVLVEPEIPQNTGNIARTCGALGADLHLVHPLGFSTSDRYLKRAGLDYWHLLK 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ET 247 +L L + + + + D++ L+ G E GL + + Sbjct: 61 VHHHDSLQAFLNDYGNENLYFVSKKA--PLRYDHISYPDRLFLLFGKETAGLPEELLRKH 118 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M ++LN+SNA A+ Y Sbjct: 119 RDTTVRIPMVAEARSLNLSNAVAIMAYEVHRQ 150 >gi|302383789|ref|YP_003819612.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides ATCC 15264] gi|302194417|gb|ADL01989.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides ATCC 15264] Length = 167 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 49/153 (32%), Gaps = 2/153 (1%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 A + ++ + L P N+GA +R + F + I + + ++A Sbjct: 15 HAYKGHRMRLALFQPAIPQNVGACIRLSACFGVELHIIEPTGFQFDDRAMKRAALDYGPL 74 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 R + S PL + L+ G+E G Sbjct: 75 AHMTRHPDWAAFQAARGSGRLILFTTKG--AAPLTDFVFQPDDTLLFGSETAGAPEHVHA 132 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + + + ++LN+S +A + L+ Sbjct: 133 AADARVFIPIRPDARSLNLSVSAGIGLFEALRQ 165 >gi|323498128|ref|ZP_08103132.1| RNA methyltransferase [Vibrio sinaloensis DSM 21326] gi|323316839|gb|EGA69846.1| RNA methyltransferase [Vibrio sinaloensis DSM 21326] Length = 158 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 4/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193 + L N G I+R + + E + ++ + + + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251 + ++ ++ + L+ G E +GL + E+ Sbjct: 64 QAFIEYLEKERENYRIFACTTKTTGHHVDANFQQGDVLLFGPETRGLPAELIESMPMEQR 123 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 IRIPMMPDARSLNLSNAVAIIAFEAWRQ 151 >gi|197119687|ref|YP_002140114.1| SpoU-class rRNA methyltransferase CspR [Geobacter bemidjiensis Bem] gi|197089047|gb|ACH40318.1| SpoU-class rRNA methyltransferase CspR [Geobacter bemidjiensis Bem] Length = 158 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 K G + + S ++K ++ G E KGL + Sbjct: 56 YWSEVEIHYWPDLPALKQAYPGSRFVYTSKKAEKSYLAFTFLYGDFIVFGKETKGLPEEL 115 Query: 245 QE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E A + + +PG +++LN+S +A + LY Sbjct: 116 IEANAQTSVRIPIPGKVRSLNLSTSAGIVLYEALRQ 151 >gi|237711324|ref|ZP_04541805.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA] gi|229454019|gb|EEO59740.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA] Length = 178 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 3/161 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L +VLD V HNIG++ R++ AF D I + + K+A GA Sbjct: 16 EFKKADKLPLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 + + N DA+Q++H GF + + + + K A+++G E KG++ Sbjct: 76 NSVEWRYKKNTLDAVQELHDQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + G +LNVS + ++ N K Sbjct: 136 QEVVNACDGCIEIPQYGTKHSLNVSVTTGIIVWEFANKLMK 176 >gi|16331214|ref|NP_441942.1| hypothetical protein slr0992 [Synechocystis sp. PCC 6803] gi|3915412|sp|P74516|TRML_SYNY3 RecName: Full=Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase slr0992 gi|1653708|dbj|BAA18620.1| slr0992 [Synechocystis sp. PCC 6803] Length = 153 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 57/146 (39%), Gaps = 1/146 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL + P N G I R+ A + + L ++ ++ ++ Sbjct: 4 LVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFELGDRYLKRAGLDYWPYVDLHYHNSC 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + G +G S L++G+E GL ++ +T + + Sbjct: 64 EEFITHWRGQGGNLLGFSVTGTVNFWDYTYQSTDWLMMGSETDGLPQMMRDLSTQLLCIP 123 Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280 MP +++LN++++AA+AL+ Sbjct: 124 MPHSEVRSLNLASSAAIALFEAGRQL 149 >gi|330721835|gb|EGG99807.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium IMCC2047] Length = 154 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L ++L P N G I+R A C I + L ++ H Sbjct: 1 MLHIILFEPEIPPNTGNIIRLAANTGCQLHIIKPMAFEFDDKRLRRAGLDY--HEWANVQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + A + + L++ + + AL+ G E +GL +++ Sbjct: 59 FYDSFAECCDNPAIERVFALTTKATCSYSETSYQAGDALMFGPESRGLPANIRDSLPEQQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SN+ AV ++ Sbjct: 119 RLRIPMLPDSRSLNLSNSVAVVVFEAWRQL 148 >gi|319940793|ref|ZP_08015132.1| RNA methyltransferase [Sutterella wadsworthensis 3_1_45B] gi|319805675|gb|EFW02456.1| RNA methyltransferase [Sutterella wadsworthensis 3_1_45B] Length = 156 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 49/151 (32%), Gaps = 2/151 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G ++R + E + ++ E+ Sbjct: 1 MFNVVLVHPEIPPNTGNVIRLCANTGASLHLIRPLGFSLEDKHMKRAGLDYWEYATLKIH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 N L H + +++ Q I GAEG GL + A + Sbjct: 61 DNWEAFLAAEHPNPERMFAMTTKGSTVFSQLKFIPGDWFIFGAEGSGLPDDIRSAFSAQN 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 L M ++LN+SNA AV ++ Sbjct: 121 RIRLPMRPDNRSLNLSNAVAVTVFEAWRQQN 151 >gi|218550884|ref|YP_002384675.1| tRNA/rRNA methyltransferase YibK [Escherichia fergusonii ATCC 35469] gi|218358425|emb|CAQ91072.1| putative rRNA methylase [Escherichia fergusonii ATCC 35469] Length = 157 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + A + L++ D L+ G E +GL + A Sbjct: 59 RHHNYAAFLKAENPQRLFALTTKGTPAHSAVSYQDSDYLMFGPETRGLSSSILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|186475041|ref|YP_001856511.1| RNA methyltransferase [Burkholderia phymatum STM815] gi|184191500|gb|ACC69465.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia phymatum STM815] Length = 156 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + + + ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDSKMRRAGLDYHEYAQMHVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 N ++ + ++ +P + GAE +GL E Sbjct: 61 RNWDALIEMEAPNLARMFAFTTRGSRPFHSHAFLPGDWFVFGAETRGLPDAVVERFPNEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149 >gi|154245126|ref|YP_001416084.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2] gi|154159211|gb|ABS66427.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2] Length = 268 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 105/260 (40%), Gaps = 12/260 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-----SRKIFQLLATKNALAR 80 + + ++ + G V L + S + LL ++ R Sbjct: 9 DDPRIADFRDVRER-DLVGRQGAFMAEGE-VVLRLLVSRLGGADSHCLRALLLSEAQAQR 66 Query: 81 L-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT---LDAVRNSQLLM 136 L D A LP PV + +D++VG LAL A L L+ + L++ Sbjct: 67 LGDVIAALPQDVPVYVAGQKVMDQVVGFPIHRGILALGVARPLPEPAALLERLGERALVV 126 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 + + N+G I R+A AF D ++ + + GA +P+ R+++ Sbjct: 127 AALGLTNHDNMGGIFRNAAAFGADAVLIDAACCDPLYRKAIRVSVGASLVVPFARVADGA 186 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 A++ + + GF+ + LS ++PL + ++ ++A + G EG GL T + M Sbjct: 187 AAVELLKARGFEVVALSPAGREPLSRLVRPPRVAALFGTEGPGLPDAVMAM-TRTVAIPM 245 Query: 257 PGIIKALNVSNAAAVALYIT 276 +LNV+ + + L+ Sbjct: 246 AAGFDSLNVATTSGIVLHHL 265 >gi|320104128|ref|YP_004179719.1| methyltransferase GidB [Isosphaera pallida ATCC 43644] gi|319751410|gb|ADV63170.1| methyltransferase GidB [Isosphaera pallida ATCC 43644] Length = 505 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 83/255 (32%), Gaps = 7/255 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R ++ +K ++ + S + + G V+ L R L Sbjct: 247 RPHNATFKDWRTLLKGSGLRKR-GEALVAGRRIVAEMLAC--RPELALGWVTGPQGPAPP 303 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + P + + ++ L P + + ++ D Sbjct: 304 E--RPAGLTWWRLTKPLLAEL-DLFGTGGPLLWIRLPDIPQYDPHEAWPEGCTLVLPFQD 360 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P NIGA LRSA+AF +I T+ + ++ A + L D + Sbjct: 361 PENIGAALRSALAFGVGRVILTREAAHPFHPKALRAGGPAAARLELRFGPALADLCGREQ 420 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + L+Q + ALI G EG GL + M I++L Sbjct: 421 FAVPRLALDRDPASPRLDQADWPARFALIAGLEGPGLAGIATNWLQRR-RIPMSPRIESL 479 Query: 264 NVSNAAAVALYITQN 278 N + + AVALY + Sbjct: 480 NAAVSVAVALYEWRR 494 >gi|261420869|ref|YP_003254551.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61] gi|319768540|ref|YP_004134041.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52] gi|261377326|gb|ACX80069.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61] gi|300808463|gb|ADK35364.1| Rrm [Geobacillus stearothermophilus] gi|317113406|gb|ADU95898.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52] Length = 247 Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 5/161 (3%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + R + ++++ V+DPHN A+LR+A AF + +P L + Sbjct: 38 MYEVLNERTRYITVLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYAD 97 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + + A K + L P+ + AL+ G E G+ Sbjct: 98 QWLTLHHKPDIKTAIADLKSQGYQVYASYLGEG-TIPVSDIDLSQPTALLFGNEHSGVSE 156 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYI----TQNH 279 + A + M G +++ N+S AAA+ALY + Sbjct: 157 EALRLADGTFVIPMYGFVQSFNISVAAALALYDVTERARRQ 197 >gi|238018785|ref|ZP_04599211.1| hypothetical protein VEIDISOL_00643 [Veillonella dispar ATCC 17748] gi|237864551|gb|EEP65841.1| hypothetical protein VEIDISOL_00643 [Veillonella dispar ATCC 17748] Length = 161 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 42/146 (28%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R A + + + ++ + N+ Sbjct: 3 IVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHENI 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHL 254 + K + + L+ G E +GL E + Sbjct: 63 QELYAKYPDRRYFYATTKAKHTHSE--VKYEIGDMLVFGPESRGLPESLLEGVEETCIRI 120 Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280 M ++LN+SNA A+ Y Sbjct: 121 PMVDEARSLNLSNAVAIIAYEAMRQL 146 >gi|325279827|ref|YP_004252369.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM 20712] gi|324311636|gb|ADY32189.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM 20712] Length = 223 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 4/159 (2%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL- 184 L R + +VL+ + HN A++RSA + + + + + + Sbjct: 26 LIQERTDYVTVVLEDLFQSHNQSAVMRSADCYGIQHVHLIENRNSYDMTSTVSQGARDWL 85 Query: 185 ---EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 H + T + + ++ + +++ K+A G E GL Sbjct: 86 SIHRHKELENNTQATIDQLRAEGYRILATTPHANDIFVDDIDLEKGKMAFFFGTELTGLS 145 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M G ++LNVS AA+ +Y Sbjct: 146 DLVIGQADEFVKIPMYGFTESLNVSVCAAITMYSVTRRL 184 >gi|70726108|ref|YP_253022.1| hypothetical protein SH1107 [Staphylococcus haemolyticus JCSC1435] gi|68446832|dbj|BAE04416.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 156 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 52/151 (34%), Gaps = 1/151 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ +L ++ EH+ Sbjct: 1 MTNHIVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250 ++ D + + + ++ I G E GL + + A + Sbjct: 61 HDSIEDFFDATQGEYYLLTKFGKQTYSDFDFSKEDTDYYFIFGRETTGLPDWVKDKYADT 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M I++LN+SN AA+ +Y Sbjct: 121 ALRIPMSENIRSLNLSNTAALLIYEALRQQN 151 >gi|257068745|ref|YP_003155000.1| rRNA methylase [Brachybacterium faecium DSM 4810] gi|256559563|gb|ACU85410.1| rRNA methylase [Brachybacterium faecium DSM 4810] Length = 275 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 104/269 (38%), Gaps = 13/269 (4%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 + + +I + D L DY +M +SR + +S A++ Sbjct: 1 METPQRRQITEITDLADPALD----DYLRMTDVRLRSRVEVERGLFMAESFEVISRAMDA 56 Query: 64 PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG----LALETA 119 L ++ LA+ PV ++++ G +H+G + Sbjct: 57 GMAP-RSFLMSEKWLAKFAPLYEQFPEVPVFVGAEPLLEQLTGFH-LHRGALAAMQRPVL 114 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 P + L A + VL+++ D N+GA RSA A D ++ T + + + Sbjct: 115 PAVEELLAATGGRSRIAVLENLVDHTNVGACFRSAAAMGVDAVLVTPQCADPLYRRSIRV 174 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAE 236 + G + +P+ RI N ++ + G+ GL+ ++ ++ +AL+LG+E Sbjct: 175 SMGTVFQVPWTRIENWPASVHDLQEAGYVVAGLTLGEGAITLDDLAAEDHENLALVLGSE 234 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNV 265 G GL T + M + +LNV Sbjct: 235 GHGLMGSTDRALDRRVTIPMQHGVDSLNV 263 >gi|221052955|ref|XP_002257852.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|193807684|emb|CAQ38388.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] Length = 320 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 85/261 (32%), Gaps = 38/261 (14%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---------ARLDWDANLPHPFPV 93 ++ ++YGV++VS+ L R I +L ++ + +D P+ Sbjct: 72 QAENNVDYVYGVNSVSSVLVKNERTIHSVLVNEHIRLNKKTRKQAYQYIFDTIKKRNIPI 131 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 +T + +D +VG + + T + +++ + Sbjct: 132 RTTSKKKMDDLVGGFPHNDIIMETTYRTMKKAKHFLKDY--------PQKEKRSNIYICL 183 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 T +S ++ + + + +I Sbjct: 184 HDI------DTPVLHSSVGTSEFLDFFHVNNMLTFMDDLKSCGFKILSTCCHPNDSIPND 237 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL--------HMPG------- 258 + Q KN+KI +ILG E KGL + E + ++ P Sbjct: 238 RLQELANVQMNKNEKIFIILGNETKGLSKEILEKSDICIYINGHRTEVAPTPDLNHNGEF 297 Query: 259 IIKALNVSNAAAVALYITQNH 279 + +LNV+NA A+ L+ +H Sbjct: 298 TLDSLNVNNACAILLHHFTSH 318 >gi|15804150|ref|NP_290189.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 EDL933] gi|15833738|ref|NP_312511.1| tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 str. Sakai] gi|157158942|ref|YP_001465089.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli E24377A] gi|168746844|ref|ZP_02771866.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4113] gi|168753429|ref|ZP_02778436.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4401] gi|168759703|ref|ZP_02784710.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4501] gi|168766025|ref|ZP_02791032.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4486] gi|168772428|ref|ZP_02797435.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4196] gi|168779761|ref|ZP_02804768.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4076] gi|168785483|ref|ZP_02810490.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC869] gi|168797449|ref|ZP_02822456.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC508] gi|191168138|ref|ZP_03029935.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B7A] gi|193066094|ref|ZP_03047150.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli E22] gi|193068534|ref|ZP_03049496.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli E110019] gi|194427425|ref|ZP_03059974.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B171] gi|195935135|ref|ZP_03080517.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 str. EC4024] gi|208809488|ref|ZP_03251825.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4206] gi|208813348|ref|ZP_03254677.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4045] gi|208819822|ref|ZP_03260142.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4042] gi|209400099|ref|YP_002273088.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4115] gi|209921079|ref|YP_002295163.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli SE11] gi|217325527|ref|ZP_03441611.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. TW14588] gi|218556171|ref|YP_002389084.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli IAI1] gi|218697330|ref|YP_002404997.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli 55989] gi|254795564|ref|YP_003080401.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 str. TW14359] gi|260846626|ref|YP_003224404.1| putative rRNA methylase [Escherichia coli O103:H2 str. 12009] gi|260857996|ref|YP_003231887.1| putative rRNA methylase [Escherichia coli O26:H11 str. 11368] gi|260870339|ref|YP_003236741.1| putative rRNA methylase [Escherichia coli O111:H- str. 11128] gi|261224209|ref|ZP_05938490.1| predicted rRNA methylase [Escherichia coli O157:H7 str. FRIK2000] gi|261254820|ref|ZP_05947353.1| putative rRNA methylase [Escherichia coli O157:H7 str. FRIK966] gi|291284980|ref|YP_003501798.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O55:H7 str. CB9615] gi|300815154|ref|ZP_07095379.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 107-1] gi|300919824|ref|ZP_07136299.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 115-1] gi|300923393|ref|ZP_07139434.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 182-1] gi|301325291|ref|ZP_07218798.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 78-1] gi|309797477|ref|ZP_07691868.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 145-7] gi|12518356|gb|AAG58753.1|AE005588_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13363959|dbj|BAB37907.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|157080972|gb|ABV20680.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli E24377A] gi|187771711|gb|EDU35555.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4196] gi|188018363|gb|EDU56485.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4113] gi|189002486|gb|EDU71472.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4076] gi|189358940|gb|EDU77359.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4401] gi|189364523|gb|EDU82942.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4486] gi|189369515|gb|EDU87931.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4501] gi|189374384|gb|EDU92800.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC869] gi|189380038|gb|EDU98454.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC508] gi|190901807|gb|EDV61559.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B7A] gi|192926256|gb|EDV80894.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli E22] gi|192958185|gb|EDV88626.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli E110019] gi|194414465|gb|EDX30738.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B171] gi|208729289|gb|EDZ78890.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4206] gi|208734625|gb|EDZ83312.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4045] gi|208739945|gb|EDZ87627.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4042] gi|209161499|gb|ACI38932.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4115] gi|209754868|gb|ACI75746.1| hypothetical protein ECs4484 [Escherichia coli] gi|209754870|gb|ACI75747.1| hypothetical protein ECs4484 [Escherichia coli] gi|209754872|gb|ACI75748.1| hypothetical protein ECs4484 [Escherichia coli] gi|209754874|gb|ACI75749.1| hypothetical protein ECs4484 [Escherichia coli] gi|209754876|gb|ACI75750.1| hypothetical protein ECs4484 [Escherichia coli] gi|209914338|dbj|BAG79412.1| putative RNA methyltransferase [Escherichia coli SE11] gi|217321748|gb|EEC30172.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. TW14588] gi|218354062|emb|CAV00592.1| putative rRNA methylase [Escherichia coli 55989] gi|218362939|emb|CAR00576.1| putative rRNA methylase [Escherichia coli IAI1] gi|254594964|gb|ACT74325.1| predicted rRNA methylase [Escherichia coli O157:H7 str. TW14359] gi|257756645|dbj|BAI28147.1| predicted rRNA methylase [Escherichia coli O26:H11 str. 11368] gi|257761773|dbj|BAI33270.1| predicted rRNA methylase [Escherichia coli O103:H2 str. 12009] gi|257766695|dbj|BAI38190.1| predicted rRNA methylase [Escherichia coli O111:H- str. 11128] gi|290764853|gb|ADD58814.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O55:H7 str. CB9615] gi|300413177|gb|EFJ96487.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 115-1] gi|300420303|gb|EFK03614.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 182-1] gi|300532046|gb|EFK53108.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 107-1] gi|300847818|gb|EFK75578.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 78-1] gi|308118913|gb|EFO56175.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 145-7] gi|320191338|gb|EFW65988.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 str. EC1212] gi|320639515|gb|EFX09123.1| putative rRNA methylase [Escherichia coli O157:H7 str. G5101] gi|320644954|gb|EFX13984.1| putative rRNA methylase [Escherichia coli O157:H- str. 493-89] gi|320650221|gb|EFX18710.1| putative rRNA methylase [Escherichia coli O157:H- str. H 2687] gi|320655573|gb|EFX23501.1| putative rRNA methylase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661307|gb|EFX28731.1| putative rRNA methylase [Escherichia coli O55:H7 str. USDA 5905] gi|320666321|gb|EFX33320.1| putative rRNA methylase [Escherichia coli O157:H7 str. LSU-61] gi|323155260|gb|EFZ41443.1| spoU rRNA Methylase family protein [Escherichia coli EPECa14] gi|323160715|gb|EFZ46652.1| spoU rRNA Methylase family protein [Escherichia coli E128010] gi|323173199|gb|EFZ58828.1| spoU rRNA Methylase family protein [Escherichia coli LT-68] gi|323179422|gb|EFZ64989.1| spoU rRNA Methylase family protein [Escherichia coli 1180] gi|323182637|gb|EFZ68040.1| spoU rRNA Methylase family protein [Escherichia coli 1357] gi|323944062|gb|EGB40142.1| RNA methyltransferase [Escherichia coli H120] gi|324019718|gb|EGB88937.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 117-3] gi|324116052|gb|EGC09978.1| RNA methyltransferase [Escherichia coli E1167] gi|326337390|gb|EGD61225.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 str. 1044] gi|326339915|gb|EGD63722.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 str. 1125] Length = 157 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + L++ D L+ G E +GL + A Sbjct: 59 RHHDFRAFLEAENPQRLFALTTKGTPAHSAVNYQDGDYLMFGPETRGLPASILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|314936092|ref|ZP_07843439.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis subsp. hominis C80] gi|313654711|gb|EFS18456.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis subsp. hominis C80] Length = 156 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 1/151 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ +L ++ EH+ Sbjct: 1 MTNHIVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 N+ + + + + + + I G E GL +E A + Sbjct: 61 HENIESFFEVTNGKYYLLTKFGKQTYSDFDFSNTEIENYFIFGRETTGLPDWVKEKYADT 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M I++LN+SN AA+ +Y Sbjct: 121 TLRIPMSDHIRSLNLSNTAALLIYEALRQQN 151 >gi|212640614|ref|YP_002317134.1| rRNA methylase [Anoxybacillus flavithermus WK1] gi|212562094|gb|ACJ35149.1| rRNA methylase [Anoxybacillus flavithermus WK1] Length = 238 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 2/160 (1%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + + R + ++ + V+DPHN A+LRSA AF + +P E + Sbjct: 38 MYDVLSERTRYITILTEAVDDPHNQAAVLRSAEAFGIQDVHVVTGAAPFEP-NKWVTRHA 96 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + S + + PLEQ + L+ G E +G+ Sbjct: 97 DKWLNVHKHSSIEQAIRHLQQNGYQVYASYLGEGTIPLEQIDVSKPTVLLFGNEHRGVSE 156 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + A + M G +++ N+S AAA++LY AK Sbjct: 157 EALALADGKFVIPMNGFVQSFNISVAAAISLYEITK-RAK 195 >gi|194397115|ref|YP_002038555.1| rRNA/tRNA methylase [Streptococcus pneumoniae G54] gi|194356782|gb|ACF55230.1| rRNA/tRNA methylase [Streptococcus pneumoniae G54] Length = 86 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 29/50 (58%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + L++G EG+G+ P E+A + H+ M G ++LNV+ AA + + Sbjct: 36 ENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILXFHL 85 >gi|332967964|gb|EGK07051.1| RNA methyltransferase [Desmospora sp. 8437] Length = 180 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 3/149 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + L P+N G I R+ + +E L +S + Sbjct: 27 MPFHICLVEPEIPNNTGNIARTCAVTGSVLHLIRPLGFSTEDKYLKRSGMDYWYKVDVRY 86 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 + + F + + + G E KGL P+ E + Sbjct: 87 YDSFAEFTASFPGGRFFCATTKAQRSYTS--FSYREGDIFVFGKESKGLPPEILETYRDT 144 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++++ N+ N+AA+ LY Sbjct: 145 NIRIPMRPVVRSHNLGNSAAIILYEALRQ 173 >gi|303312903|ref|XP_003066463.1| RNA methyltransferase, TrmH family, group 3 containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240106125|gb|EER24318.1| RNA methyltransferase, TrmH family, group 3 containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 495 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 64/308 (20%), Positives = 102/308 (33%), Gaps = 77/308 (25%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-------WDANLPHPFPVKTVPPQT 100 + F+YG H V +A+ RKI+ L + +L + VK V + Sbjct: 138 SEFIYGFHPVRSAIRAGRRKIYALYLCERPTNQLSGSGLNSLQKLAVTAGAKVKIVSSEW 197 Query: 101 IDKIVGKEA--VHQGLALETAP-------------------------------------- 120 + HQG+ E +P Sbjct: 198 SQALSRVCKEVNHQGIVAEVSPLPKLPALSYEQVASLPVTNFNVKVAPQSKEEAAVNGTS 257 Query: 121 ------------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 ++LD + DPHN+GAILRSA F D + + R Sbjct: 258 GLIPLTSLRQDSYDDHRTQHNPRYPFTLLLDGIVDPHNLGAILRSAYYFGADAVAFSSRN 317 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-- 226 S S V+ KS+SGA EHIP I I + + G++ + + + KN Sbjct: 318 SAPLSPVVMKSSSGAAEHIPLISIHDTVSFIDASRRNGWRFFAAEPPASVAPDSKNKNIV 377 Query: 227 -----------DKIALILGAEGKGLRPKTQETATSMAHLH-----MPGIIKALNVSNAAA 270 L+LG EG GL + + A + + + + +LNV+ A+ Sbjct: 378 SSKNLPNELQNYPCVLMLGNEGDGLSKELKSKADASVVVDCPRKHIVDEVDSLNVAVASG 437 Query: 271 VALYITQN 278 + Sbjct: 438 ILCEAFMR 445 >gi|293393588|ref|ZP_06637898.1| TrmH family RNA methyltransferase [Serratia odorifera DSM 4582] gi|291423923|gb|EFE97142.1| TrmH family RNA methyltransferase [Serratia odorifera DSM 4582] Length = 157 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + P + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHVIEPMGFPWDDKRLRRAGLDY--HEFTRVK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + A + L++ L+ G E +GL + Sbjct: 59 RHADYAAFMASEQPQRLFALTTKGTPAHSAVNYQQGDYLLFGPETRGLPAEILNALPPQQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA AV +Y Sbjct: 119 KIRIPMQAQSRSMNLSNAVAVVVYEAWRQL 148 >gi|327539925|gb|EGF26526.1| S-adenosyl-L-methionine dependent tRNA/rRNA methyltransferase, SpoU, predicted [Rhodopirellula baltica WH47] Length = 156 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 3/145 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ VA I + L ++ +++ + + + Sbjct: 7 VVLYQPEIPQNTGNIGRTCVAVGAKLWIVEPASFQFDEKRLRRAGLDYWQYLDWEPVPSW 66 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-SMAHL 254 ++++ F S+ L+ G E GL + L Sbjct: 67 DVLCERLNPERFFFFSKSAKRTVWE--AEFALGDVLVFGRETSGLPASILKPDDPRSLRL 124 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 M +++LN+S A +ALY Q Sbjct: 125 PMREQVRSLNLSVTAGIALYEHQRQ 149 >gi|312621608|ref|YP_004023221.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor kronotskyensis 2002] gi|312876538|ref|ZP_07736521.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor lactoaceticus 6A] gi|311796749|gb|EFR13095.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor lactoaceticus 6A] gi|312202075|gb|ADQ45402.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor kronotskyensis 2002] Length = 154 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 3/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P+N G I R+ + E L ++ +++ Sbjct: 1 MPINIVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKI 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250 +L D +K K+ Q D L+ G E GL E Sbjct: 61 YKDLNDFFEKNRGANIFYFSTKG--KQYYTQAPYEDNCYLMFGKETAGLPQWLIEQNIHR 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++LN+SN+ A+ LY Sbjct: 119 TYRIPMISDVRSLNLSNSVAIVLYEALRQL 148 >gi|95930687|ref|ZP_01313421.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM 684] gi|95133339|gb|EAT15004.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM 684] Length = 158 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 4/153 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + + +VL P N G I R + K + L ++ H+P Sbjct: 1 MIDPPFHIVLVEPEIPPNTGNIARLCAGTQTHLHLVGKLGFSLDDRYLKRAGLDYWPHVP 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-T 247 R +L Q + ++ + ++ G E KGL + E Sbjct: 61 LHRWDSLEQLEQAYPEGRWWYTSKTAHLVHSQ--ATFHPGDFIVFGKETKGLPKELLERH 118 Query: 248 ATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LN+S +A + LY Sbjct: 119 PQRCLRIPMSCDAVRSLNLSTSAGIVLYEALRQ 151 >gi|62859047|ref|NP_001016220.1| RNA methyltransferase-like protein 1 [Xenopus (Silurana) tropicalis] Length = 415 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 34/320 (10%), Positives = 76/320 (23%), Gaps = 58/320 (18%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--------RKIFQ 70 Y + + K+ + + + + + L G ++ AL + + R + Sbjct: 88 RYERALPGDKRLSKVVTIAKSKKFRDRHGQVLLEGRRLLTDALESGAVLQTLFFSRVDYL 147 Query: 71 LLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLAL------------ 116 L + L + + + V PQ + I K + Sbjct: 148 KLFPPDKLRKANLIKVNFDNIKIWSDVVAPQGLMGIFAKPDHEKISYPTTQTKHTLPLSL 207 Query: 117 -------------------------------ETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 L A + + + D Sbjct: 208 ICDNIRDPGNLGTILRCAAGAGCNKVLLTKGCVDAWEPKVLRAGMGAHFRLPVISSLDWD 267 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 + L + + S G + P + Sbjct: 268 IVPNYLSAGTKVFLADNFRPDMKHKTGDVSEKASDYGWVSTNPRRILITEEGYESSGDEE 327 Query: 206 GFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPK---TQETAT-SMAHLHMPGII 260 + E A+++G E GL + E + ++ + I Sbjct: 328 DNTDKLYIPGLEVQSYFESWAQSPCAIVIGGETHGLSIESLLLAEKSNGKRLYIPVVPDI 387 Query: 261 KALNVSNAAAVALYITQNHF 280 +LN + AA++ L+ + Sbjct: 388 DSLNSAMAASILLFEGKRQI 407 >gi|78212412|ref|YP_381191.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9605] gi|78196871|gb|ABB34636.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9605] Length = 249 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 76/241 (31%), Gaps = 16/241 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 L G H + L + +++AT+ A ++ V + + + Sbjct: 2 LLEGTHLLQEVLRQGNAP-DEIIATEAWWQGHSALAERCVQARLRIVTDEVLRAALTTVT 60 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 + L L+VLD + DP N+G +LR+A+A + + Sbjct: 61 P---DGVACLSPLDRLPAVPPELDFLLVLDRIQDPGNLGTLLRTALAADVNAVWMGAGVD 117 Query: 170 PS------------ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 P + I +R A + + S Sbjct: 118 PLGTKVLRASAGALLQLPHQRFGPSEAMAISQLRQGLKQLAALGVQVVATLVPDSTQASP 177 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P AL+LG EG GL P Q T L +++LNV++AA L + Sbjct: 178 IPYWDLDWTLPTALVLGTEGAGLHPDLQACCTHAVTLPHSARVESLNVASAAVPLLLERR 237 Query: 278 N 278 Sbjct: 238 R 238 >gi|306844547|ref|ZP_07477136.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO1] gi|306275158|gb|EFM56914.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO1] Length = 189 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 1/157 (0%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D +L + L + P N G ILR A + L ++ LE Sbjct: 26 DTGFPMELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRAGMDYLEQ 85 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 R + + G + + LS+ + P + L+ G E G+ + Sbjct: 86 AALTRHPDWHCFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHD 145 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282 A + M ++LN++ + A+ +K Sbjct: 146 NADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 182 >gi|90414908|ref|ZP_01222872.1| putative rRNA methylase, SpoU family protein [Photobacterium profundum 3TCK] gi|90323964|gb|EAS40560.1| putative rRNA methylase, SpoU family protein [Photobacterium profundum 3TCK] Length = 154 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 44/147 (29%), Gaps = 4/147 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L N G I+R + + E L ++ + R + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKLRRAGLDYHDLAHVHRHKDF 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253 + M + + LI G E +GL + E+ Sbjct: 64 AAFKEAMVGRRLFACTTKT--TNYHTNAQFAEGDVLIFGPETRGLPAEFIESLPLEQRLR 121 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNAAA+ Y Sbjct: 122 IPMHPDSRSLNLSNAAAIIGYEAWRQL 148 >gi|254251337|ref|ZP_04944655.1| RNA methyltransferase TrmH [Burkholderia dolosa AUO158] gi|124893946|gb|EAY67826.1| RNA methyltransferase TrmH [Burkholderia dolosa AUO158] Length = 156 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A + ++ E+ Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + ++ + G+E +GL + E Sbjct: 61 GDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFLPGDWFVFGSETRGLPAELLERFPGEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149 >gi|220926822|ref|YP_002502124.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS 2060] gi|219951429|gb|ACL61821.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS 2060] Length = 154 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 51/147 (34%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L + L + P N G +LR A I L +S L+H+ R Sbjct: 1 MLRLALFQPDIPQNTGTMLRLAACLGAAVEIIEPAGFDVSDRHLRRSGLDYLDHVTITRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + + G + + ++ P L++G E G+ A + Sbjct: 61 CSFSAFEAWRREAGLRLVLATTAGALPYTDLAYGPDDCLLVGRESAGVPEAVHAAADARV 120 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + + +++LNV+ AAA+ L Sbjct: 121 VIPLRAGLRSLNVAVAAAMILGEAMRQ 147 >gi|294625418|ref|ZP_06704050.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600293|gb|EFF44398.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 305 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 97/236 (41%), Gaps = 10/236 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 LYG++ V A + +L ++ + + + + V + K+ Sbjct: 65 LYGINAVQAVFKTRPEALRKLYLSEARIPQFKALLAWCVTQRIGYRVVDEADLSKLAA-S 123 Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 A H+G+ E + L + L + LD V +PHN GAILRS+ F G++ Sbjct: 124 AHHEGVVAEVLRVTPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLL 183 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + S A+ A G E +P +++ + AL ++ GF D + + Sbjct: 184 LPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATALAQLRQAGFAIAATLVDGGQDVFAA 243 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277 ++ ++GAE +G+ + G +++LNV++A AV A + + Sbjct: 244 ALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 299 >gi|218463384|ref|ZP_03503475.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli Kim 5] Length = 179 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 73/154 (47%), Positives = 98/154 (63%), Gaps = 14/154 (9%) Query: 14 SLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ--------PENLFLYGVHTVSAA 60 S KD+HYA LRR HRD K+ + QK + + P+ ++LYG+HTV AA Sbjct: 16 SAKDTHYANLRRAHRDAKRERGEIPTPLPQKRKRGPEDWKPPALAPDQVYLYGLHTVRAA 75 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L+NP RK +L T+NALARL+ D + V P IDK++G EA+HQG+ LET P Sbjct: 76 LDNPERKKIKLSVTQNALARLEIDVETL-GIAFEIVSPHEIDKVLGPEAIHQGVMLETLP 134 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 L L+A+++S LL+VLD V DPHN+GAI+RSA Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSA 168 >gi|320179947|gb|EFW54889.1| putative tRNA/rRNA methyltransferase YibK [Shigella boydii ATCC 9905] Length = 160 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + L++ D L+ G E +GL + A Sbjct: 59 RHHDYSAFLEAENPQRLFALTTKGTPTHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|16131477|ref|NP_418063.1| tRNA Leu mC34/mU34 2'-O-methyltransferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|26250250|ref|NP_756290.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli CFT073] gi|89110405|ref|AP_004185.1| predicted rRNA methylase [Escherichia coli str. K-12 substr. W3110] gi|91213120|ref|YP_543106.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli UTI89] gi|110643850|ref|YP_671580.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli 536] gi|117625884|ref|YP_859207.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli APEC O1] gi|170083114|ref|YP_001732434.1| rRNA methylase [Escherichia coli str. K-12 substr. DH10B] gi|170680159|ref|YP_001745908.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli SMS-3-5] gi|191170469|ref|ZP_03032022.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli F11] gi|215488886|ref|YP_002331317.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O127:H6 str. E2348/69] gi|218560681|ref|YP_002393594.1| tRNA/rRNA methyltransferase YibK [Escherichia coli S88] gi|218691893|ref|YP_002400105.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli ED1a] gi|218702375|ref|YP_002410004.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli IAI39] gi|218707241|ref|YP_002414760.1| putative tRNA /rRNA methyltransferase YibK [Escherichia coli UMN026] gi|227883776|ref|ZP_04001581.1| tRNA/rRNA methyltransferase YibK [Escherichia coli 83972] gi|237703377|ref|ZP_04533858.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|238902697|ref|YP_002928493.1| putative rRNA methylase [Escherichia coli BW2952] gi|254038806|ref|ZP_04872858.1| RNA methyltransferase [Escherichia sp. 1_1_43] gi|293407230|ref|ZP_06651154.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1412] gi|293413043|ref|ZP_06655711.1| RNA methyltransferase [Escherichia coli B354] gi|298382977|ref|ZP_06992572.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1302] gi|300898753|ref|ZP_07117061.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 198-1] gi|300939207|ref|ZP_07153888.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 21-1] gi|300948061|ref|ZP_07162200.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 116-1] gi|300954500|ref|ZP_07166949.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 175-1] gi|300983585|ref|ZP_07176677.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 200-1] gi|300984991|ref|ZP_07177243.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 45-1] gi|301018938|ref|ZP_07183161.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 69-1] gi|301028365|ref|ZP_07191612.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 196-1] gi|301047398|ref|ZP_07194478.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 185-1] gi|301644272|ref|ZP_07244275.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 146-1] gi|306816043|ref|ZP_07450181.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli NC101] gi|307140305|ref|ZP_07499661.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli H736] gi|307314306|ref|ZP_07593914.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli W] gi|312968052|ref|ZP_07782263.1| spoU rRNA Methylase family protein [Escherichia coli 2362-75] gi|331644325|ref|ZP_08345454.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H736] gi|331649424|ref|ZP_08350510.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M605] gi|331655239|ref|ZP_08356238.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M718] gi|331659929|ref|ZP_08360867.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli TA206] gi|331665234|ref|ZP_08366135.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli TA143] gi|331685271|ref|ZP_08385857.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H299] gi|84028007|sp|P0AGJ8|TRML_ECOL6 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL gi|84028008|sp|P0AGJ7|TRML_ECOLI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL gi|26110679|gb|AAN82864.1|AE016768_282 Hypothetical tRNA/rRNA methyltransferase yibK [Escherichia coli CFT073] gi|466744|gb|AAB18583.1| alternate gene name yibK [Escherichia coli str. K-12 substr. MG1655] gi|1790034|gb|AAC76630.1| tRNA Leu mC34/mU34 2'-O-methyltransferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|85676436|dbj|BAE77686.1| predicted rRNA methylase [Escherichia coli str. K12 substr. W3110] gi|91074694|gb|ABE09575.1| hypothetical protein UTI89_C4147 [Escherichia coli UTI89] gi|110345442|gb|ABG71679.1| hypothetical tRNA/rRNA methyltransferase YibK [Escherichia coli 536] gi|115515008|gb|ABJ03083.1| predicted rRNA methylase [Escherichia coli APEC O1] gi|169890949|gb|ACB04656.1| predicted rRNA methylase [Escherichia coli str. K-12 substr. DH10B] gi|170517877|gb|ACB16055.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli SMS-3-5] gi|190909277|gb|EDV68863.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli F11] gi|215266958|emb|CAS11403.1| predicted rRNA methylase [Escherichia coli O127:H6 str. E2348/69] gi|218367450|emb|CAR05232.1| putative rRNA methylase [Escherichia coli S88] gi|218372361|emb|CAR20235.1| putative rRNA methylase [Escherichia coli IAI39] gi|218429457|emb|CAR10423.2| putative rRNA methylase [Escherichia coli ED1a] gi|218434338|emb|CAR15262.1| putative rRNA methylase [Escherichia coli UMN026] gi|222035317|emb|CAP78062.1| Uncharacterized tRNA/rRNA methyltransferase yibK [Escherichia coli LF82] gi|226838771|gb|EEH70798.1| RNA methyltransferase [Escherichia sp. 1_1_43] gi|226902641|gb|EEH88900.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|227839054|gb|EEJ49520.1| tRNA/rRNA methyltransferase YibK [Escherichia coli 83972] gi|238863084|gb|ACR65082.1| predicted rRNA methylase [Escherichia coli BW2952] gi|260447375|gb|ACX37797.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli DH1] gi|281180652|dbj|BAI56982.1| putative RNA methyltransferase [Escherichia coli SE15] gi|291426041|gb|EFE99075.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1412] gi|291468690|gb|EFF11183.1| RNA methyltransferase [Escherichia coli B354] gi|294494012|gb|ADE92768.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli IHE3034] gi|298276813|gb|EFI18331.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1302] gi|299878567|gb|EFI86778.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 196-1] gi|300300672|gb|EFJ57057.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 185-1] gi|300306909|gb|EFJ61429.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 200-1] gi|300318533|gb|EFJ68317.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 175-1] gi|300357606|gb|EFJ73476.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 198-1] gi|300399432|gb|EFJ82970.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 69-1] gi|300408271|gb|EFJ91809.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 45-1] gi|300452402|gb|EFK16022.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 116-1] gi|300455888|gb|EFK19381.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 21-1] gi|301077372|gb|EFK92178.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 146-1] gi|305850439|gb|EFM50896.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli NC101] gi|306906129|gb|EFN36648.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli W] gi|307555708|gb|ADN48483.1| RNA methyltransferase [Escherichia coli ABU 83972] gi|307628683|gb|ADN72987.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli UM146] gi|309704010|emb|CBJ03356.1| putative RNA-methyltransferase [Escherichia coli ETEC H10407] gi|312287311|gb|EFR15220.1| spoU rRNA Methylase family protein [Escherichia coli 2362-75] gi|312948170|gb|ADR28997.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O83:H1 str. NRG 857C] gi|315062897|gb|ADT77224.1| predicted rRNA methylase [Escherichia coli W] gi|315138188|dbj|BAJ45347.1| tRNA/rRNA methyltransferase YibK [Escherichia coli DH1] gi|315285360|gb|EFU44805.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 110-3] gi|315292984|gb|EFU52336.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 153-1] gi|315297043|gb|EFU56323.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 16-3] gi|315618690|gb|EFU99276.1| spoU rRNA Methylase family protein [Escherichia coli 3431] gi|320193884|gb|EFW68517.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli WV_060327] gi|323189351|gb|EFZ74633.1| spoU rRNA Methylase family protein [Escherichia coli RN587/1] gi|323376510|gb|ADX48778.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli KO11] gi|323949848|gb|EGB45732.1| RNA methyltransferase [Escherichia coli H252] gi|323954851|gb|EGB50631.1| RNA methyltransferase [Escherichia coli H263] gi|324008114|gb|EGB77333.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 57-2] gi|324012631|gb|EGB81850.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 60-1] gi|330909673|gb|EGH38187.1| tRNA (cytosine34-2'-O-)-methyltransferase [Escherichia coli AA86] gi|331036619|gb|EGI08845.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H736] gi|331041922|gb|EGI14066.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M605] gi|331047254|gb|EGI19332.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M718] gi|331053144|gb|EGI25177.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli TA206] gi|331057744|gb|EGI29730.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli TA143] gi|331077642|gb|EGI48854.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H299] gi|332345577|gb|AEE58911.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 157 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + L++ D L+ G E +GL + A Sbjct: 59 RHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|24114875|ref|NP_709385.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri 2a str. 301] gi|30065118|ref|NP_839289.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri 2a str. 2457T] gi|74314157|ref|YP_312576.1| putative tRNA/rRNA methyltransferase YibK [Shigella sonnei Ss046] gi|82545974|ref|YP_409921.1| tRNA/rRNA methyltransferase YibK [Shigella boydii Sb227] gi|110807718|ref|YP_691238.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri 5 str. 8401] gi|187730115|ref|YP_001882306.1| putative tRNA/rRNA methyltransferase YibK [Shigella boydii CDC 3083-94] gi|300907650|ref|ZP_07125278.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 84-1] gi|301303842|ref|ZP_07209961.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 124-1] gi|24054114|gb|AAN45092.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30043379|gb|AAP19100.1| hypothetical protein S4123 [Shigella flexneri 2a str. 2457T] gi|73857634|gb|AAZ90341.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81247385|gb|ABB68093.1| conserved hypothetical protein [Shigella boydii Sb227] gi|110617266|gb|ABF05933.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|187427107|gb|ACD06381.1| RNA methyltransferase, TrmH family, group 2 [Shigella boydii CDC 3083-94] gi|281602968|gb|ADA75952.1| putative tRNA/rRNA methyltransferase yibK [Shigella flexneri 2002017] gi|300400586|gb|EFJ84124.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 84-1] gi|300840805|gb|EFK68565.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 124-1] gi|313647521|gb|EFS11971.1| spoU rRNA Methylase family protein [Shigella flexneri 2a str. 2457T] gi|315253995|gb|EFU33963.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 85-1] gi|320176330|gb|EFW51390.1| putative tRNA/rRNA methyltransferase YibK [Shigella dysenteriae CDC 74-1112] gi|320186849|gb|EFW61569.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri CDC 796-83] gi|323166910|gb|EFZ52649.1| spoU rRNA Methylase family protein [Shigella sonnei 53G] gi|332749942|gb|EGJ80354.1| spoU rRNA Methylase family protein [Shigella flexneri K-671] gi|332750102|gb|EGJ80513.1| spoU rRNA Methylase family protein [Shigella flexneri 4343-70] gi|332751237|gb|EGJ81640.1| spoU rRNA Methylase family protein [Shigella flexneri 2747-71] gi|332764194|gb|EGJ94431.1| spoU rRNA Methylase family protein [Shigella flexneri 2930-71] gi|332996168|gb|EGK15795.1| spoU rRNA Methylase family protein [Shigella flexneri VA-6] gi|332997309|gb|EGK16925.1| spoU rRNA Methylase family protein [Shigella flexneri K-218] gi|332997816|gb|EGK17427.1| spoU rRNA Methylase family protein [Shigella flexneri K-272] gi|333012857|gb|EGK32234.1| spoU rRNA Methylase family protein [Shigella flexneri K-304] gi|333013348|gb|EGK32720.1| spoU rRNA Methylase family protein [Shigella flexneri K-227] Length = 157 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + L++ D L+ G E +GL + A Sbjct: 59 RHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|225020559|ref|ZP_03709751.1| hypothetical protein CORMATOL_00566 [Corynebacterium matruchotii ATCC 33806] gi|305679757|ref|ZP_07402567.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium matruchotii ATCC 14266] gi|224946689|gb|EEG27898.1| hypothetical protein CORMATOL_00566 [Corynebacterium matruchotii ATCC 33806] gi|305660377|gb|EFM49874.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium matruchotii ATCC 14266] Length = 178 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 2/147 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++ D P N G +R + + L ++ + NL Sbjct: 12 IIFDQPCIPPNTGNAIRLCANTGATLHLAGPLGFNLKDKNLKRAGLDYHDFANVQVYKNL 71 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253 + + + SS L+ G E GL T + Sbjct: 72 QNCFDTLPEHQHRVFAFSSHGTTTHTDITYRFGDVLLFGTEPTGLDESALHHPRITEIVR 131 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 + M I+++N++NAA+VA+Y Sbjct: 132 IPMRPGIRSMNLANAASVAIYEVWRQL 158 >gi|22123992|ref|NP_667415.1| hypothetical protein y0071 [Yersinia pestis KIM 10] gi|21956733|gb|AAM83666.1|AE013608_1 hypothetical protein y0071 [Yersinia pestis KIM 10] Length = 194 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 47/165 (28%), Gaps = 5/165 (3%) Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 P + L +VL P N G I+R C + + L ++ Sbjct: 21 FWYPAPLIIGGHMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAG 80 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEG 237 E + L Q L + L+ G E Sbjct: 81 LDYHEFADIKHHHDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPET 140 Query: 238 KGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +GL + A + M +++N+SNA +V +Y Sbjct: 141 RGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 185 >gi|221194652|ref|ZP_03567709.1| RNA methyltransferase [Atopobium rimae ATCC 49626] gi|221185556|gb|EEE17946.1| RNA methyltransferase [Atopobium rimae ATCC 49626] Length = 292 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 99/263 (37%), Gaps = 17/263 (6%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-- 87 Y + + ++R + V AL + L + + Sbjct: 20 YAHLTNNQLRNRLDPAHSVMICESPFVVEVALQTGQVP-YSFLTDTAHILQASEILERCG 78 Query: 88 -------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140 + P+ +PPQ ++++VG + L P + + + ++ + VL++ Sbjct: 79 WHRCTQDQNVIPLLVMPPQELERLVGYKITRGLLTAMERPQGASITETLGKARTVAVLEN 138 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + D N+GA+ R+A A D ++ + + + + G + +P+ + Sbjct: 139 LVDVSNVGAVFRNAAALDVDAVLLAPHCADHLARRAIRVSMGTVFQVPWAHVPEELWVEG 198 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKN-------DKIALILGAEGKGLRPKTQETATSMAH 253 MH + ++ + + + K AL G+EG GL +T E A Sbjct: 199 LMHMLHEEGFITTALALTDTAVPLTDIKRTSSLGKHALFFGSEGYGLDQRTIEACDQTAI 258 Query: 254 LHMPGIIKALNVSNAAAVALYIT 276 + M + +LNV+ ++AVA + Sbjct: 259 IPMSHAVDSLNVAASSAVAFWEL 281 >gi|265984588|ref|ZP_06097323.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13] gi|264663180|gb|EEZ33441.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13] Length = 171 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 1/164 (0%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + D +L + L + P N G ILR A + L ++ Sbjct: 1 MQPAGFHDTGFPMELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRA 60 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 LE R + + G + + LS+ + P + L+ G E G Sbjct: 61 GMDYLEQAALTRHPDWHRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAG 120 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282 + + A + M ++LN++ + A+ +K Sbjct: 121 VSEAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 164 >gi|254482693|ref|ZP_05095931.1| RNA methyltransferase, TrmH family, group 2 [marine gamma proteobacterium HTCC2148] gi|214037052|gb|EEB77721.1| RNA methyltransferase, TrmH family, group 2 [marine gamma proteobacterium HTCC2148] Length = 157 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R C + + L ++ Sbjct: 4 MLKIVLYQPEIPPNTGNIMRLCANTGCSLHLIEPLGFDLDEKKLRRAGLDY--REFAEVS 61 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + +G+++ P Q AL+ G E +GL Sbjct: 62 VYPELNTFTAKHPQCRLMGVTTKGSTPHHQAAYTSGDALLFGPETRGLPASVLSKLPPQQ 121 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNAAAV Y Sbjct: 122 RIRIPMLKNSRSLNLSNAAAVITYEALRQL 151 >gi|68535492|ref|YP_250197.1| putative rRNA methylase [Corynebacterium jeikeium K411] gi|68263091|emb|CAI36579.1| putative rRNA methylase [Corynebacterium jeikeium K411] Length = 306 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 55/310 (17%), Positives = 105/310 (33%), Gaps = 49/310 (15%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 IFS + R D++ + + ++KS + + G V L +P + Sbjct: 3 IFSPIRIDDPRDSRLD-DFRNLNASDKKS----GEQLIIAEGTLVVPRLLASPY-PTRAV 56 Query: 72 LATKNALARLDWDANLP-----HPFPVKTVPPQTIDKIVGKEA----------------- 109 + L ++ + + F V V + + ++ G + Sbjct: 57 VGFPGKLRAIEAELSRSLSSDDANFSVFEVSREVLKEVAGFDMHRGLVASADRLPVNPVS 116 Query: 110 ------------VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 A +L +A S ++ VL+ V D NIG+I R+A Sbjct: 117 PVGSVSTASTGDPAGTGASAVEAVLDHLEEAADTSGVIAVLEGVGDHENIGSIFRNAAGL 176 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + D ++ + + + G + +P+ R T Q+ + Sbjct: 177 NVDAVLFGAATADPLYRRSVRVSMGHVLRLPWARFPGTTTTWQRDLELLQRRGYEVVALT 236 Query: 218 KPLEQE---------IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 + ++ K+A+++GAEG GL A A + M +LNV+ A Sbjct: 237 PAGDTTLREATEAARMRGRKVAVMVGAEGPGLTEHAMRAADVRASIPMARGTDSLNVATA 296 Query: 269 AAVALYITQN 278 AA+A Y Sbjct: 297 AAIAFYEAVR 306 >gi|302847769|ref|XP_002955418.1| hypothetical protein VOLCADRAFT_65891 [Volvox carteri f. nagariensis] gi|300259260|gb|EFJ43489.1| hypothetical protein VOLCADRAFT_65891 [Volvox carteri f. nagariensis] Length = 162 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K+ L+LG E +G+ P+ + + GII++LNV + A+ALY Sbjct: 92 YRWPAKVVLVLGREKEGIPPEVLSLLDATLEIPQRGIIRSLNVHVSGAIALYEYVRQ 148 >gi|160358655|sp|A4QNL8|RMTL1_XENTR RecName: Full=RNA methyltransferase-like protein 1 gi|140832729|gb|AAI35862.1| RNA methyltransferase like 1 [Xenopus (Silurana) tropicalis] Length = 415 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 34/320 (10%), Positives = 76/320 (23%), Gaps = 58/320 (18%) Query: 19 HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--------RKIFQ 70 Y + + K+ + + + + + L G ++ AL + + R + Sbjct: 88 RYERALPGDKRLSKVVTIAKSKKFRDRHGQVLLEGRRLLTDALESGAVLQTLFFSRVDYL 147 Query: 71 LLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLAL------------ 116 L + L + + + V PQ + I K + Sbjct: 148 KLFPPDKLRKANLIKVNFDNIKIWSDVVAPQGLMGIFAKPDHEKISYPTTQTKHTLPLSL 207 Query: 117 -------------------------------ETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 L A + + + D Sbjct: 208 ICDNIRDPGNLGTILRCAAGAGCNKVLLTKGCVDAWEPKVLRAGMGAHFRLPVISSLDWD 267 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 + L + + S G + P + Sbjct: 268 IVPNYLSAGTKVFLADNFRPDMKHKTGDVSEKASDYGWVSTNPRRILITEEGYESSSDEE 327 Query: 206 GFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPK---TQETAT-SMAHLHMPGII 260 + E A+++G E GL + E + ++ + I Sbjct: 328 DNADKLYIPGLEVQSYFESWAQSPCAIVIGGETHGLSIESLLLAEKSNGKRLYIPVVPDI 387 Query: 261 KALNVSNAAAVALYITQNHF 280 +LN + AA++ L+ + Sbjct: 388 DSLNSAMAASILLFEGKRQI 407 >gi|161523632|ref|YP_001578644.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|189351599|ref|YP_001947227.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|221211142|ref|ZP_03584121.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia multivorans CGD1] gi|160341061|gb|ABX14147.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia multivorans ATCC 17616] gi|189335621|dbj|BAG44691.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|221168503|gb|EEE00971.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia multivorans CGD1] Length = 156 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A + ++ E+ Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + ++ + G+E +GL + E A Sbjct: 61 RDWDAFVAAESPDPARIFAFTTRGSSRFHDRAFLPGDWFVFGSETRGLPAELLERFPAEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++N+SN AV ++ Sbjct: 121 RVRLPMRPGNRSMNLSNTVAVVVFEAWRQ 149 >gi|229543212|ref|ZP_04432272.1| RNA methyltransferase, TrmH family, group 2 [Bacillus coagulans 36D1] gi|229327632|gb|EEN93307.1| RNA methyltransferase, TrmH family, group 2 [Bacillus coagulans 36D1] Length = 158 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 2/148 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P N G I R+ + ++ +L ++ +H+ + Sbjct: 4 LHVVLYQPEIPANTGNIARTCAGTGTTLHLIRPLGFSTDDKMLKRAGLDYWKHVNIVYYD 63 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETA-TSM 251 +L + +K I + + + + G E GL E Sbjct: 64 SLEEFFEKNADGEVYYIETFGEKPFTDFDFSDPDKNLYFMFGRETSGLPNDLIEKNKDRC 123 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 124 LRIPMTDKVRSLNLSNTAAILVYEALRQ 151 >gi|218289430|ref|ZP_03493664.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius LAA1] gi|218240536|gb|EED07717.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius LAA1] Length = 154 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 5/149 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VL P N G + R+ C + K ++ L ++ + Sbjct: 1 MHIVLFEPEIPANTGNVARTCAVTGCTLHLVGKLGFSTDDRQLKRAGLDYWHLLDIRYHD 60 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252 +L + + F + + + L+ G E KGL E A + Sbjct: 61 SLEELWELYPEGVFHYVETEG--GRWYTEVAYGPNDFLVFGKETKGLPKDVIEAHADHVV 118 Query: 253 HLHM--PGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA AV ++ Sbjct: 119 RIPMIDHAAARSLNLSNAVAVVVFEALRQ 147 >gi|197104628|ref|YP_002130005.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1] gi|196478048|gb|ACG77576.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1] Length = 235 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 56/229 (24%), Positives = 88/229 (38%), Gaps = 4/229 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEA 109 G + A +I +L +N LA L LP PV +D IVG Sbjct: 2 AEGRVVLEKAARAMPERIVSVLVAENRLAALGPVLADLPPGTPVYAAGQAVMDSIVGFPI 61 Query: 110 VHQGLALETAPLLSPT--LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 LAL P S L + + L++ L + + NIG I R+A AF +I Sbjct: 62 HRGILALGRRPERSAAGLLAGLPDRALVVGLSAIANHDNIGGIFRNAAAFGAHAVILDAA 121 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + + GA +P+ R+ D + + G + + LS + L Sbjct: 122 CCDPLYRKAIRVSVGAALTMPFARLEAGEDLVGALAGAGLEVLALSPAGETDLADLAPPA 181 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++A + GAEG GL T + M G +LNV+ + + L+ Sbjct: 182 RVAALFGAEGPGLPDDVLAR-TRTVRIPMAGGFDSLNVATTSGIVLHHL 229 >gi|213964878|ref|ZP_03393077.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium amycolatum SK46] gi|213952414|gb|EEB63797.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium amycolatum SK46] Length = 179 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 2/160 (1%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 + + D +++ ++ D P N G +R + + L ++ Sbjct: 13 PTNSTDWIKSHTCHVLFDRPVIPPNTGNAIRMCAGSGAMLHLAKPLGFNFDDKNLRRAGL 72 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 + ++ AL+ S G + ++ + + L+ G E GL Sbjct: 73 DYHDLADVRIHDSIDQALETFASQGCRIFAFTAHADTWHTDIEYTNTDVLLFGPEPTGLE 132 Query: 242 PKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + T + + M +++N+SNAAAVA Y Sbjct: 133 QSVLDDPRITQLIRIPMLPARRSMNLSNAAAVAAYEVWRQ 172 >gi|313893147|ref|ZP_07826724.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. oral taxon 158 str. F0412] gi|313442500|gb|EFR60915.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. oral taxon 158 str. F0412] Length = 161 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R A + + + ++ + N+ Sbjct: 3 IVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHENI 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254 + +K + + L+ G E +GL E + + Sbjct: 63 EELYEKYPDRRYFYATTKAKHTHSE--VNYEIGDMLVFGPESRGLPESLLEGKEDTCIRI 120 Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280 M ++LN+SNA A+ Y Sbjct: 121 PMVDEARSLNLSNAVAIIAYEGMRQL 146 >gi|256374649|ref|YP_003098309.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827] gi|255918952|gb|ACU34463.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827] Length = 283 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 96/238 (40%), Gaps = 9/238 (3%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 ++ + + +++ + GV V L +P + +L + + L Sbjct: 41 FRDLSTADRRPDRPGGRGLVIAEGVVVVERLLASPY-PVRAVLGVRRRVEALGELPA--- 96 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P + ++VG +++G+ P+LD + + L VL+ V D N+GA Sbjct: 97 --PAYVASADVMARVVGFH-LNRGVLAAADRAPQPSLDELATGRRLAVLEGVGDHENLGA 153 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 + R+A A DG++ S + + G + +P+ + + L+ + GF Sbjct: 154 LFRNAAALGIDGVVLGPGCSDPLYRRSVRVSMGHVLRVPFAAVDDWPGGLKLLQDKGFVV 213 Query: 210 IGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 L+ + + ++A++LG+EG GL + A + M + +LNV Sbjct: 214 AALTPRVGSVELPDAGLRGRRVAVLLGSEGPGLTEEAIGAADVAVRIPMSPGVDSLNV 271 >gi|90422442|ref|YP_530812.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris BisB18] gi|90104456|gb|ABD86493.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris BisB18] Length = 162 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 55/144 (38%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + P N G ILR + + I P ++ L+ + +R Sbjct: 9 IALFQPDIPQNTGTILRLCACLNVEAHIIEPAGFPVSDRHFRRAGMDYLDQVTIMRHDCW 68 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + Q + G + + L++ P + + L+LG E G+ A + + Sbjct: 69 SKFEQWRAAAGCRLVLLTTKGLTPYLDYRYSARDVLLLGRESAGVPDDVAAVADARLVIP 128 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 + +++LNV+ AAA+ L Sbjct: 129 VQPGLRSLNVAMAAAMVLGEALRQ 152 >gi|83591705|ref|YP_425457.1| tRNA/rRNA methyltransferase SpoU [Rhodospirillum rubrum ATCC 11170] gi|83574619|gb|ABC21170.1| tRNA/rRNA methyltransferase (SpoU) [Rhodospirillum rubrum ATCC 11170] Length = 160 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + I L+LG E G+ P+ E A + M +++LN++ AA+ L Sbjct: 86 FHAETIFQPNDVLLLGRESAGVPPEVHERADLRIRVPMVPGVRSLNIAVTAALVLGEALR 145 Query: 279 H 279 Sbjct: 146 Q 146 >gi|325270980|ref|ZP_08137567.1| TrmH family RNA methyltransferase [Prevotella multiformis DSM 16608] gi|324986777|gb|EGC18773.1| TrmH family RNA methyltransferase [Prevotella multiformis DSM 16608] Length = 242 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 35/253 (13%), Positives = 88/253 (34%), Gaps = 24/253 (9%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K + + + + + G V+ L+ ++L + + ++ + + Sbjct: 8 KLIHTLETR-KGREKAGLFVAEGPKIVNDLLHEG-FVAEEILDNLDDIRKVSFLKHPQPV 65 Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 V +P ET P S +++L++ LD V DP N+G I Sbjct: 66 LGVFRLPAAD---------------RETPPAYSDIFRQYLDNRLVLALDGVQDPGNLGTI 110 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R A F + I ++ + + + ++ G++ + ++ + Sbjct: 111 IRIADWFGIENIFCSQETADCWNPKVVQATMGSIARVKLHYLNLN---RLTEGLPADYPV 167 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVS 266 + L + + + +++G EG G+ P + + ++LNV+ Sbjct: 168 YATLLDGDSLYEYPLSKQGMIVMGNEGNGITPMLRSKINRKLLIPNYPPGRKTAESLNVA 227 Query: 267 NAAAVALYITQNH 279 A ++ + Sbjct: 228 IATSIVCAEFRRR 240 >gi|212692475|ref|ZP_03300603.1| hypothetical protein BACDOR_01971 [Bacteroides dorei DSM 17855] gi|237724320|ref|ZP_04554801.1| tRNA/rRNA methyltransferase [Bacteroides sp. D4] gi|212664950|gb|EEB25522.1| hypothetical protein BACDOR_01971 [Bacteroides dorei DSM 17855] gi|229437189|gb|EEO47266.1| tRNA/rRNA methyltransferase [Bacteroides dorei 5_1_36/D4] Length = 178 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 3/161 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L +VLD V HNIG++ R++ AF D I + + K+A GA Sbjct: 16 EFKKADKLPLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 + + N DA+Q++H GF + + + + K A+++G E KG++ Sbjct: 76 NSVEWRYKKNTLDAVQELHDQGFIVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + G +LNVS + ++ N K Sbjct: 136 QEVVNACDGCIEIPQYGTKHSLNVSVTTGIIVWEFANKLMK 176 >gi|205374872|ref|ZP_03227664.1| rRNA methyltransferase-like protein [Bacillus coahuilensis m4-4] Length = 160 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 2/148 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + +E +L ++ EH+ + +L Sbjct: 8 VVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTEDKMLRRAGLDYWEHVTIVYYDSL 67 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQETA-TSMAH 253 + +K F + + DK I G E GL E Sbjct: 68 DEFFEKNAGGEFFYLTKYGEIPHSDFDYSSVDKDYFFIFGRETTGLPKDVIENNKDRALR 127 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281 + M +++LN+SN AA+ +Y Sbjct: 128 IPMNENVRSLNLSNTAAILVYEALRQQN 155 >gi|209886113|ref|YP_002289970.1| tRNA/rRNA methyltransferase [Oligotropha carboxidovorans OM5] gi|209874309|gb|ACI94105.1| tRNA/rRNA methyltransferase [Oligotropha carboxidovorans OM5] Length = 158 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 52/144 (36%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + P N G ILR + I P ++ L+ + R + Sbjct: 3 IALYQPDIPQNTGTILRLCACLEVEAHIIEPAGFPVSDRHFRRAGMDYLDRVSISRHVSW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + G + + ++ + D L+ G E G+ + E+A + Sbjct: 63 NAFRVWREADGGRLVLFTTKAATSYLAHRYEDTDILLFGRESAGVPDEVAESADQRLLIP 122 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 + +++LN++ +AA+AL Sbjct: 123 IAEGMRSLNIAVSAAMALGEALRQ 146 >gi|323965873|gb|EGB61321.1| RNA methyltransferase [Escherichia coli M863] gi|323975171|gb|EGB70276.1| RNA methyltransferase [Escherichia coli TW10509] gi|327250731|gb|EGE62433.1| spoU rRNA Methylase family protein [Escherichia coli STEC_7v] Length = 157 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + A + L++ D L+ G E +GL + A Sbjct: 59 RHHNYAAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|253577565|ref|ZP_04854877.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. oral taxon 786 str. D14] gi|251843034|gb|EES71070.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. oral taxon 786 str. D14] Length = 154 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 3/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + ++ A L ++ + Sbjct: 1 MALHIVLVEPEIPANTGNIARTCAATGIHLHLVRPLGFRTDDATLKRAGLDYWYAVHIEY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 + + +K F + + D + G E KGL P+ E + Sbjct: 61 HDSFQEVEEKYAGSRFFFATTKAKKRYTD--FKFQDGDFFVFGKETKGLPPEILEAHPDT 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++LN+SN+AA+ +Y Sbjct: 119 TMRMPMTDKVRSLNLSNSAAIIVYEALRQL 148 >gi|238898865|ref|YP_002924547.1| putative tRNA/rRNA methyltransferase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466625|gb|ACQ68399.1| putative tRNA/rRNA methyltransferase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 170 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 49/158 (31%), Gaps = 5/158 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 +R + L +VL P N G I+R C + L ++ E Sbjct: 1 MRKNLLNIVLFEPEIPANTGNIIRLCANSGCQLHLIKPLGFDLSDKRLRRAGLDYHEFTA 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + L + L + L+ G E +GL + Sbjct: 61 VKHHDDYQAFLNNEGFYNTCVASLFALTTKGYSAHSDVNYQKNDYLLFGPETRGLPSRLL 120 Query: 246 ET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ A + M +++N+SNA ++ +Y Sbjct: 121 DSLPAEKKIKIPMQPNSRSMNLSNAVSIVVYEAWRQLN 158 >gi|49475913|ref|YP_033954.1| RNA methyltransferase [Bartonella henselae str. Houston-1] gi|49238721|emb|CAF27975.1| RNA methyltransferase [Bartonella henselae str. Houston-1] Length = 158 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 50/149 (33%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L + L + N G ILR + F I L ++ LE+ R Sbjct: 1 MTLHIALFQPDIAGNTGTILRLSACFGLHVHIIEPAGFNLSDRNLKRAGMDYLEYASLER 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + M + + + LS+ ++ Q + L+ G E G+ E Sbjct: 61 HIDWPHFIHTMKQFNRRLLLLSTKAETCYTQICYQENDVLLFGRESAGVPNYVYEAVNET 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN++ + A+ Sbjct: 121 LKIPMQPYARSLNLAMSVAITTGEALRQI 149 >gi|222530099|ref|YP_002573981.1| TrmH family group 2 RNA methyltransferase [Caldicellulosiruptor bescii DSM 6725] gi|222456946|gb|ACM61208.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor bescii DSM 6725] Length = 154 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 3/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P+N G I R+ + E L ++ +++ Sbjct: 1 MPINIVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKI 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250 +L + +K K+ Q D L+ G E GL E Sbjct: 61 YKDLNEFFEKNRGANVFYFSTKG--KQYYTQAPYEDNCYLMFGKETAGLPQWLIEQNIHR 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++LN+SN+ A+ LY Sbjct: 119 TYRIPMISDVRSLNLSNSVAIVLYEALRQL 148 >gi|298290777|ref|YP_003692716.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506] gi|296927288|gb|ADH88097.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506] Length = 268 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 95/245 (38%), Gaps = 9/245 (3%) Query: 41 RHTS---QPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLDWDAN-LPHPFPVKT 95 + + + G + AL+ +R + LL ++ + L P P+ T Sbjct: 22 KERDLVGRGGRFIVEGRTVLDVALSARNRFALESLLLAESRVHALTDLLAQAPDDLPIYT 81 Query: 96 VPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 +D I G + P ++ + ++ + L++V + + N+G I+R Sbjct: 82 AAQPILDGITGFHIHRGLLGVGLRGEMPSMADLVASLPDEALVVVPLGITNHDNVGGIMR 141 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A AF D + + + G +P+ R + L + + GF+ + L Sbjct: 142 NAAAFGADAALFDFASCDPLYRKAIRVSVGGSLVVPFAREGSAEAILDLLAAHGFELLAL 201 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 S + L + + AL+LGAEG GL A + M +LNV+ + +A Sbjct: 202 SPAGEATLGGIERPKRAALLLGAEGPGLPDHVLARA-RTVRIPMKAGFDSLNVATTSGIA 260 Query: 273 LYITQ 277 L+ Sbjct: 261 LHALA 265 >gi|256021387|ref|ZP_05435252.1| putative tRNA/rRNA methyltransferase YibK [Shigella sp. D9] gi|332282622|ref|ZP_08395035.1| YibK [Shigella sp. D9] gi|332104974|gb|EGJ08320.1| YibK [Shigella sp. D9] Length = 157 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + L++ D L+ G E +GL + A Sbjct: 59 RHHDFRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|157163090|ref|YP_001460408.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli HS] gi|170018161|ref|YP_001723115.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli ATCC 8739] gi|188491907|ref|ZP_02999177.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli 53638] gi|194435762|ref|ZP_03067865.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli 101-1] gi|253771551|ref|YP_003034382.1| tRNA/rRNA methyltransferase YibK [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163536|ref|YP_003046644.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli B str. REL606] gi|293463933|ref|ZP_06664347.1| RNA methyltransferase [Escherichia coli B088] gi|300822379|ref|ZP_07102519.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 119-7] gi|300927961|ref|ZP_07143520.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 187-1] gi|312972108|ref|ZP_07786282.1| spoU rRNA Methylase family protein [Escherichia coli 1827-70] gi|331670450|ref|ZP_08371289.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli TA271] gi|331679700|ref|ZP_08380370.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H591] gi|157068770|gb|ABV08025.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli HS] gi|169753089|gb|ACA75788.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli ATCC 8739] gi|188487106|gb|EDU62209.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli 53638] gi|194425305|gb|EDX41289.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli 101-1] gi|242379130|emb|CAQ33932.1| predicted rRNA methylase [Escherichia coli BL21(DE3)] gi|253322595|gb|ACT27197.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975437|gb|ACT41108.1| predicted rRNA methylase [Escherichia coli B str. REL606] gi|253979593|gb|ACT45263.1| predicted rRNA methylase [Escherichia coli BL21(DE3)] gi|291321565|gb|EFE61001.1| RNA methyltransferase [Escherichia coli B088] gi|300464053|gb|EFK27546.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 187-1] gi|300525026|gb|EFK46095.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 119-7] gi|310334485|gb|EFQ00690.1| spoU rRNA Methylase family protein [Escherichia coli 1827-70] gi|320201364|gb|EFW75945.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli EC4100B] gi|323934848|gb|EGB31230.1| RNA methyltransferase [Escherichia coli E1520] gi|323939632|gb|EGB35838.1| RNA methyltransferase [Escherichia coli E482] gi|323959857|gb|EGB55505.1| RNA methyltransferase [Escherichia coli H489] gi|323971251|gb|EGB66496.1| RNA methyltransferase [Escherichia coli TA007] gi|331062512|gb|EGI34432.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli TA271] gi|331072872|gb|EGI44197.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H591] Length = 157 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + L++ D L+ G E +GL + A Sbjct: 59 RHHDFRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|295098731|emb|CBK87821.1| rRNA methylase, putative, group 2 [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 157 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H + Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFTAVV 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + A + L++ D L+ G E +GL + A Sbjct: 59 RHHDYAAFLGSEKPQRMFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPATILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|332084789|gb|EGI89972.1| spoU rRNA Methylase family protein [Shigella boydii 5216-82] Length = 160 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + L++ D L+ G E +GL + A Sbjct: 59 RHHDYSAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|82779099|ref|YP_405448.1| putative tRNA/rRNA methyltransferase YibK [Shigella dysenteriae Sd197] gi|293417071|ref|ZP_06659698.1| RNA methyltransferase [Escherichia coli B185] gi|309784414|ref|ZP_07679053.1| spoU rRNA Methylase family protein [Shigella dysenteriae 1617] gi|81243247|gb|ABB63957.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|291431102|gb|EFF04095.1| RNA methyltransferase [Escherichia coli B185] gi|308927921|gb|EFP73389.1| spoU rRNA Methylase family protein [Shigella dysenteriae 1617] Length = 157 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + L++ D L+ G E +GL + A Sbjct: 59 RHHDYSAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|194431210|ref|ZP_03063503.1| RNA methyltransferase, TrmH family, group 2 [Shigella dysenteriae 1012] gi|194420665|gb|EDX36741.1| RNA methyltransferase, TrmH family, group 2 [Shigella dysenteriae 1012] gi|332084453|gb|EGI89648.1| spoU rRNA Methylase family protein [Shigella dysenteriae 155-74] Length = 160 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + L++ D L+ G E +GL + A Sbjct: 59 RHHDYSAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|331002513|ref|ZP_08326031.1| hypothetical protein HMPREF0491_00893 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410329|gb|EGG89763.1| hypothetical protein HMPREF0491_00893 [Lachnospiraceae oral taxon 107 str. F0167] Length = 176 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 1/145 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I RS VA + + + ++A E + Y S++ Sbjct: 3 IVLLEPEIPANTGNIARSCVATNTRLHLIEPLGFRISEKHIKRAAMDYWEKLDYTVYSDI 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254 D +K + ++ + ++ N ++ G E G+ + E + Sbjct: 63 NDFYEKNPAAREHMYFATTKAHHTYKEVSFNPDDYIMFGKESAGIPEEILSENEDGCIRI 122 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 M G I++LN+SN+ A+ LY Sbjct: 123 PMWGDIRSLNLSNSVAIILYEALAQ 147 >gi|326437534|gb|EGD83104.1| hypothetical protein PTSG_12070 [Salpingoeca sp. ATCC 50818] Length = 717 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 8/157 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L V++ ++D NI AI R+ AF T +R+ + GA + + R Sbjct: 32 LACVIEGLHDTGNISAIQRTCDAFGVHDFHTIRRFPMDRMKQHRHVSKGADKWLRVHRWG 91 Query: 194 NLTDALQKMHSWGFQ--------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + D + + G++ + S L + A + G E G+ + Sbjct: 92 STGDCMAHLRQHGYRIAVTAVADDSSSNHASVTDLHALELDQPTAFVFGNEVAGISTQAL 151 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 E A + + + G + ALNVS AA L+ + Sbjct: 152 EEADVLVQIPLVGFVSALNVSVAAGCVLHHATLQRRR 188 >gi|302868678|ref|YP_003837315.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029] gi|315504850|ref|YP_004083737.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5] gi|302571537|gb|ADL47739.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC 27029] gi|315411469|gb|ADU09586.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5] Length = 269 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 90/266 (33%), Gaps = 23/266 (8%) Query: 4 ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 I+ ++I DY+ + ++R G + AL Sbjct: 6 ITDPDDDRI---------------ADYRALTDVELRTRWEPPHGLFIAEGELVLRRALRA 50 Query: 64 PSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 L+ K R+D A+L PV P + + G LA L Sbjct: 51 GYPARSYLVDAK----RVDQLADLDTGDAPVYAATPDVLQRATGFHVHRGVLASFHRKPL 106 Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + + ++ +++L+ VN+ N+GAI R A A D ++ + + + + G Sbjct: 107 RSADEVLAAARRVVILEDVNNHTNLGAIFRGAAALGVDAVLLSPTCADPLYRRSVRVSMG 166 Query: 183 ---ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 A+ + D ++ + ++ AL+LGAEG G Sbjct: 167 EVFAVPYAKLDSWPGGLDQVRAAGFTVLAMTPAPDAVPMQRLTPAQRERAALLLGAEGPG 226 Query: 240 LRPKTQETATSMAHLHMPGIIKALNV 265 L Q + + M + +LNV Sbjct: 227 LTAAAQAASDVRVVIPMRRGVDSLNV 252 >gi|194695936|gb|ACF82052.1| unknown [Zea mays] Length = 209 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 80/199 (40%), Gaps = 23/199 (11%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA------------VRNSQLLMVLDHVNDPHNIG 148 + K+ G ++V A+ + + D + ++VLD + DP N+G Sbjct: 1 MKKVSGMQSVDSTEAVAVMHMPNHFRDLGSHQDGDALDGLFSYPKRILVLDGIQDPGNLG 60 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++RSA AF DG+ + ++A GA +P + + Sbjct: 61 TLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGTWHDLHALVTKYRMKM 120 Query: 209 TIGLSSDSKKPLEQEI----------KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 G S ++ N+ + L+LG+EG GL +T + + ++ M G Sbjct: 121 MAGHPESSSDASKETYSLSNELADSLLNESLCLVLGSEGNGLSAETLQAC-ELVNIPMEG 179 Query: 259 IIKALNVSNAAAVALYITQ 277 ++LNVS A + L++ Q Sbjct: 180 TFESLNVSVAGGIFLFMLQ 198 >gi|145219563|ref|YP_001130272.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris vibrioformis DSM 265] gi|145205727|gb|ABP36770.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeovibrioides DSM 265] Length = 178 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 2/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++++L ++ N+G++ RSA A + II + + + K+A GA +P+ Sbjct: 22 PKHPVILMLHNIRSMWNVGSMFRSADAAGIEKIILSGYTATPPRKEITKTALGADASMPW 81 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQET 247 N L+ + G + GL L E+K + + L++G E +G+ Sbjct: 82 EYTDNPQQTLRDLKKSGVRICGLEIAEGSRLYTEMKAQDFPVCLLVGNEVQGIEDNLLAQ 141 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + GI +LNVS AA V L+ Sbjct: 142 CDLVLEIPQFGIKHSLNVSVAAGVVLFELVR 172 >gi|292670912|ref|ZP_06604338.1| TrmH family RNA methyltransferase [Selenomonas noxia ATCC 43541] gi|292647533|gb|EFF65505.1| TrmH family RNA methyltransferase [Selenomonas noxia ATCC 43541] Length = 209 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VL P N G I R D + ++ L ++ + Sbjct: 46 MHIVLVEPEIPGNTGNIARLCAGTGMDLHLVRPLGFSTDDKYLKRAGLDYWHLVKVHYHD 105 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252 + +D ++ F + + + G E +GL E Sbjct: 106 SFSDVRKQYKGHPFYFCTTKA--AHIYSDIVYTSDAFFVFGKETEGLPESLLEDNEEHTV 163 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA AV Y Sbjct: 164 RIPMQAGARSLNLSNAVAVVAYEALRQ 190 >gi|40786353|dbj|BAD07003.1| conserved hypothetical protein [Onion yellows phytoplasma] Length = 119 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 60/111 (54%) Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 +K++ ++ +AK + GALE+ ++NL + K+ +G S+S + Q Sbjct: 1 MSKKHQVPLNSTVAKISCGALEYTKVFLVTNLHQTILKLKKNQVLIVGTDSNSSQSFHQI 60 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 KN +A+I+G EG G+R ++ + + M G I +LNVS AAA+ +Y Sbjct: 61 PKNSSLAIIVGNEGIGIRHLLKQQCDFLVKIPMYGKINSLNVSVAAALMIY 111 >gi|163850108|ref|YP_001638151.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens PA1] gi|254559252|ref|YP_003066347.1| rRNA methylase [Methylobacterium extorquens DM4] gi|163661713|gb|ABY29080.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens PA1] gi|254266530|emb|CAX22294.1| putative rRNA methylase [Methylobacterium extorquens DM4] Length = 149 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 51/147 (34%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L + L + P N G +LR + I L +S L+H+ R Sbjct: 1 MLRLALYQPDIPQNTGTMLRMSACLGIAVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + G + + ++ P Q D L++G E G+ A + Sbjct: 61 RSWDAFEAWRRETGIRLVLATTTGSVPYTQHAFRDGDCLLMGRESAGVPEAVHAAADARV 120 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + + +++LNV+ AA+ L Sbjct: 121 VVPIRPGLRSLNVAVCAAMMLGEAIRQ 147 >gi|312135814|ref|YP_004003152.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor owensensis OL] gi|311775865|gb|ADQ05352.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor owensensis OL] Length = 154 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 3/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P+N G I R+ + E L ++ +++ Sbjct: 1 MPINIVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKI 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250 +L D +K K+ Q D L+ G E GL E Sbjct: 61 YRDLNDFFEKNRGANIFYYSTKG--KQYYTQAPYEDNCYLMFGKETAGLPRWLIEQNIHR 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++LN+SN+ A+ LY Sbjct: 119 TYRIPMISDVRSLNLSNSVAIVLYEALRQL 148 >gi|209519808|ref|ZP_03268593.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. H160] gi|209499751|gb|EDZ99821.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. H160] Length = 156 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + + ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDTKMRRAGLDYHEYAEMNVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 ++ + K + ++ + GAE +GL E Sbjct: 61 ADWDAFIAKETPDPSRMFAFTTRGSGRFHDHAFQPGDWFVFGAETRGLPGAVLERFPDEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149 >gi|291558267|emb|CBL35384.1| Predicted rRNA methylase (SpoU class) [Eubacterium siraeum V10Sc8a] Length = 168 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 3/149 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +L +VL P N G I R+ I + L + ++ Sbjct: 1 MELNIVLVEPQIPQNTGNIARTCAVTGARLHIVKPMGFQIDDKKLKHAGLDYWHYLDITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250 L D ++ F + DK ++ G E KGL + Sbjct: 61 YDGLDDFFERNKDGEFFYFTTKGRNTYCD--AEYKDKTYIVFGREDKGLPEELLFHNKQH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN+ A+ Y Sbjct: 119 CVRIPMGSNMRSLNLSNSVAIGAYEVLRQ 147 >gi|240137241|ref|YP_002961710.1| putative rRNA methylase [Methylobacterium extorquens AM1] gi|240007207|gb|ACS38433.1| putative rRNA methylase [Methylobacterium extorquens AM1] Length = 149 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 51/147 (34%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L + L + P N G +LR A I L +S L+H+ R Sbjct: 1 MLRLALYQPDIPQNTGTMLRMAACLGIAVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + G + + ++ P Q D L++G E G+ A + Sbjct: 61 RSWEAFEAWRRETGIRLVLATTTGSVPYTQHAFRDGDCLLMGRESAGVPEAVHAAADARV 120 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + + +++LNV+ AA+ L Sbjct: 121 VVPIRPGLRSLNVAVCAAMMLGEAIRQ 147 >gi|21244041|ref|NP_643623.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] gi|21109661|gb|AAM38159.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] Length = 305 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 96/236 (40%), Gaps = 10/236 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 LYG++ V A + +L ++ + + + + V + K+ Sbjct: 65 LYGINAVQAVFKTRPEALRKLYLSEARIPQFKALLAWCVTQRIGYRVVEEADLSKLAA-S 123 Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 A H+G+ E + L + L + LD V +PHN GAILRS+ F G++ Sbjct: 124 AHHEGVVAEVLRVTPHPLQEWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLL 183 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + S A+ A G E +P +++ + AL ++ GF D + + Sbjct: 184 LPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATALAQLRQAGFAIAATLVDGGQDVFAA 243 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277 ++ ++GAE G+ + G +++LNV++A AV A + + Sbjct: 244 ALPQRLVYVMGAESDGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 299 >gi|325499155|gb|EGC97014.1| tRNA/rRNA methyltransferase YibK [Escherichia fergusonii ECD227] Length = 157 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + A + L++ D L+ G E +GL + A Sbjct: 59 RHHNYAAFLKAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPSSILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|332530820|ref|ZP_08406746.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624] gi|332039732|gb|EGI76132.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624] Length = 271 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 95/258 (36%), Gaps = 8/258 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPE---NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 R++ K+++ Q + + +++ G H AAL R +LA L Sbjct: 11 SRDNPLLKELRRLAQDNTAYRKSGTAGRVWVEGDHLARAALLRGWRPALAVLAESAWLHW 70 Query: 81 LDWDANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 + H + P + + P V++ +VLD Sbjct: 71 GGEFGDASHTGAERTVLLPDALFASISALESFSPAQGLGLVFDLPVEATVQSGLSTVVLD 130 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 V D N+G+ILRSA AF C ++ K + S + ++ GA A Sbjct: 131 RVQDAGNVGSILRSAAAFGCAQVLALKGTAALWSPKVLRAGMGAHF----GLRLVEGLAA 186 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + + SS + L + A +LG EG+G+ A + PG Sbjct: 187 DDLAVLQVPLLVTSSHQGELLHRAHLPWPCAWVLGHEGQGVGEALMARAALKLRIAQPGG 246 Query: 260 IKALNVSNAAAVALYITQ 277 ++LNV+ AAA+ L+ + Sbjct: 247 EESLNVAAAAAICLHASA 264 >gi|312126860|ref|YP_003991734.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor hydrothermalis 108] gi|311776879|gb|ADQ06365.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor hydrothermalis 108] Length = 154 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 3/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P+N G I R+ + E L ++ +++ Sbjct: 1 MSINIVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKI 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250 +L D +K K+ Q D L+ G E GL E Sbjct: 61 YKDLNDFFEKNRGANIFYFSTKG--KQYYTQAPYEDNCYLMFGKETAGLPQWLIEQNIHR 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++LN+SN+ A+ LY Sbjct: 119 TYRIPMISDVRSLNLSNSVAIVLYEALRQL 148 >gi|307244027|ref|ZP_07526146.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus stomatis DSM 17678] gi|306492551|gb|EFM64585.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus stomatis DSM 17678] Length = 156 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 5/152 (3%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL PHN G I+R+ + + L + + Sbjct: 1 MAINIVLVEPEIPHNTGNIIRTCANTGAILHLVRPLGFSLDDKHLKRCGLDYWDIADIQY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 + + K F ++ D L+ G E KGL E + Sbjct: 61 YDSFEELEDKHKGAKFFFSTINGQKNHTD--VKYEDGCFLVFGKETKGLPKDLIEANMDT 118 Query: 251 MAHLHMPG--IIKALNVSNAAAVALYITQNHF 280 + M G + LN+SNA A+ +Y Sbjct: 119 CIRIPMRGIEGARCLNLSNAVAIVVYEAMRQL 150 >gi|225155853|ref|ZP_03724339.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] gi|224803403|gb|EEG21640.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] Length = 254 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 80/241 (33%), Gaps = 17/241 (7%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKT-VPPQTIDKIVGKEAV 110 G+ V A + +L +L L V V P + KI G + Sbjct: 10 GLPAVKARFQRDAASFRRLYFDYETGRKLGIICKALALAKKVYRCVEPAELAKIAG--TL 67 Query: 111 HQGLALETAPLL-------SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 H G + + L++LD + + HN+GAI R+A F II Sbjct: 68 HHGGVVAVVDEPALRAPLPREMRAWAKAGTPLLLLDRIGNAHNVGAIARTAAFFGVAHII 127 Query: 164 TTKRYSPSESAVLAKSASG------ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 S + A + L +P + G T G + Sbjct: 128 IPAHASAALPGESAHRIAEGGLEHLTLWRVPTLARFCAELREAGYEVVGAATRGGALTLP 187 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+LG E GL + + T + + G I++LNVS AAA+ ++ Sbjct: 188 ALTGGGGGGGPRALVLGNEEHGLAAEVADACTRLVTIPGSGKIESLNVSAAAAILMFALL 247 Query: 278 N 278 Sbjct: 248 K 248 >gi|308047804|ref|YP_003911370.1| tRNA/rRNA methyltransferase (SpoU) [Ferrimonas balearica DSM 9799] gi|307629994|gb|ADN74296.1| tRNA/rRNA methyltransferase (SpoU) [Ferrimonas balearica DSM 9799] Length = 154 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYIT 276 P + L+ G E +GL +E + + M ++LN++NA ++ Y Sbjct: 85 PHTEPQYQAGDVLLFGPESRGLPEAVREAIPTSQRIRIPMKADARSLNLANAVSIVSYEA 144 Query: 277 QNHF 280 Sbjct: 145 WRQL 148 >gi|326318591|ref|YP_004236263.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375427|gb|ADX47696.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 158 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R A C + E ++ ++ E+ + Sbjct: 1 MFHIVLVEPEIPPNTGNVIRLAANTGCTLHLVEPLGFSMEDKLMKRAGLDYHEYAEVRQH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + T L+ + +++ + + + + GAE +GL P+ ++ Sbjct: 61 AGWTAFLRDAQPNPERVFAMTTHGVHTVYESLFLPGDWFVFGAESRGLPPELRDAFPPAQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV +Y Sbjct: 121 RLRLPMLPGQRSLNLSNAVAVTVYEAWRQ 149 >gi|291531994|emb|CBK97579.1| Predicted rRNA methylase (SpoU class) [Eubacterium siraeum 70/3] Length = 168 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 3/149 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +L +VL P N G I R+ I + L + ++ Sbjct: 1 MELNIVLVEPQIPQNTGNIARTCAVTGARLHIVKPMGFQIDDKKLKHAGLDYWHYLDITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250 L D ++ F + DK ++ G E KGL + Sbjct: 61 YDGLDDFFERNKDSEFFYFTTKGRNTYCD--AEYKDKTYIVFGREDKGLPEELLFHNKQH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN+ A+ Y Sbjct: 119 CVRIPMGSNMRSLNLSNSVAIGAYEVLRQ 147 >gi|167750651|ref|ZP_02422778.1| hypothetical protein EUBSIR_01628 [Eubacterium siraeum DSM 15702] gi|167656330|gb|EDS00460.1| hypothetical protein EUBSIR_01628 [Eubacterium siraeum DSM 15702] Length = 168 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 3/149 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +L +VL P N G I R+ I + L + ++ Sbjct: 1 MELNIVLIEPQIPQNTGNIARTCAVTGARLHIVKPMGFQIDDKKLKHAGLDYWHYLDITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250 L D ++ F + DK ++ G E KGL + Sbjct: 61 YDGLDDFFERNKDGEFFYFTTKGRNTYCD--AEYKDKTYIVFGREDKGLPEELLFHNKQH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN+ A+ Y Sbjct: 119 CVRIPMGSNMRSLNLSNSVAIGAYEVLRQ 147 >gi|324111936|gb|EGC05916.1| RNA methyltransferase [Escherichia fergusonii B253] Length = 157 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + A + L++ D L+ G E +GL + A Sbjct: 59 RHHNYAAFLKAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPSSILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|189346688|ref|YP_001943217.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245] gi|189340835|gb|ACD90238.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245] Length = 179 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 2/156 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L+A + ++L ++ N+G++ R+A A + II T + + K+A GA Sbjct: 18 ELEASPKYPVYLMLHNIRSMWNVGSMFRTADAAGIERIILTGYTATPPRKEIDKTALGAQ 77 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRP 242 + + + ++ DA+ ++ + G + GL L I + I L++G E G+ Sbjct: 78 DVVKWEYSADPLDAIDRLKAEGVRICGLEIAENSRLYTAIVKEEFPICLVVGNEVDGIDD 137 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + S+ + G+ +LNV+ AA VAL+ Sbjct: 138 EVLSCCDSVLEIPQYGVKHSLNVAVAAGVALFELVR 173 >gi|46200254|ref|YP_005921.1| RNA methyltransferase, putative [Thermus thermophilus HB27] gi|55980023|ref|YP_143320.1| RNA methyltransferase [Thermus thermophilus HB8] gi|46197882|gb|AAS82294.1| RNA methyltransferase, putative [Thermus thermophilus HB27] gi|55771436|dbj|BAD69877.1| RNA methyltransferase [Thermus thermophilus HB8] Length = 149 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + L+ G E +GL + + MPG +++LN++ A VA Y Sbjct: 88 YEARFREGDYLLFGPESRGLPEEVLARF-PTLKIPMPGPVRSLNLAVAVGVAAYEAYRQL 146 Query: 281 A 281 Sbjct: 147 T 147 >gi|198274154|ref|ZP_03206686.1| hypothetical protein BACPLE_00293 [Bacteroides plebeius DSM 17135] gi|198273232|gb|EDY97501.1| hypothetical protein BACPLE_00293 [Bacteroides plebeius DSM 17135] Length = 221 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 3/161 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 V L++VLD V HNIGA+ R++ AF + I + + K+A GA Sbjct: 59 EFKEVDKLPLVVVLDEVRSLHNIGAVFRTSDAFLVNCIYLCGITATPPHPEMHKTALGAE 118 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + + DA+ ++H+ G+ + + + L E K K A++LG E KG++ Sbjct: 119 YTVDWKYFKHTQDAVNELHNDGYTVLAIEQCAGSTLLDELVLEKGRKYAIVLGNEVKGVQ 178 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + + G +LNVS A + ++ + K Sbjct: 179 QEVVDMCDGCIEIPQFGTKHSLNVSVTAGIMIWEFAHKLFK 219 >gi|119473213|ref|ZP_01614899.1| putative tRNA/rRNA methyltransferase [Alteromonadales bacterium TW-7] gi|119444544|gb|EAW25860.1| putative tRNA/rRNA methyltransferase [Alteromonadales bacterium TW-7] Length = 154 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + + ++ H Sbjct: 1 MLDIVLYQPEIPPNTGNIIRLCANTGFSLHLIEPLGFEWDDKRVKRAGLDY--HEFSHVQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + ++ + + L+ G E +GL + + Sbjct: 59 RHASFEAYLEKCKPKKVYACTTKGSQFHHEARYEAGDCLVFGPETRGLPDEMIQALPNEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA AV +Y + Sbjct: 119 RVRIPMQPNSRSMNLSNAVAVFVYESWRQL 148 >gi|317495389|ref|ZP_07953758.1| SpoU rRNA methylase [Gemella moribillum M424] gi|316914448|gb|EFV35925.1| SpoU rRNA methylase [Gemella moribillum M424] Length = 177 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 2/159 (1%) Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + LD + + +++LD + DP N+G I+R+A AF+ D II K + + Sbjct: 16 VCRIEEKQLDITKYKK-VLILDRIQDPGNLGTIIRTADAFAFDCIILGKGTTSLYGQKVI 74 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 +S G+ HI ++ + +M + L +D I +A+I G EG Sbjct: 75 RSTQGSNFHIDCFENIDIKQLVTEMKEFNIYATSLKADKYLEELDNI-TGHVAIIFGNEG 133 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 G+ + ++ ++MPG ++LNVS AA + ++ Sbjct: 134 SGVTDEILGEVNNLLKINMPGRAESLNVSIAAGIVMHYI 172 >gi|261219673|ref|ZP_05933954.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1] gi|261322562|ref|ZP_05961759.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1] gi|260924762|gb|EEX91330.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1] gi|261295252|gb|EEX98748.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1] Length = 171 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 1/164 (0%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 D +L + L + P N G ILR A + L ++ Sbjct: 1 MQPCGFHDTGFPMELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRTLKRA 60 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 LE R + + G + + LS+ + P + L+ G E G Sbjct: 61 GMDYLEQAALTRHPDWNRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAG 120 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282 + + A + M ++LN++ + A+ +K Sbjct: 121 VPEAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 164 >gi|258510467|ref|YP_003183901.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477193|gb|ACV57512.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 154 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 3/98 (3%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + + ++ + + L+ G E KGL Sbjct: 50 YWHLLDIRYHDSLEELWALYPEGVFHYVETEGGRWYTEVAYGPNDFLVFGKETKGLPKDV 109 Query: 245 QE-TATSMAHLHM--PGIIKALNVSNAAAVALYITQNH 279 E A + + M ++LN+SNA AV ++ Sbjct: 110 IEAHADHVVRIPMIDHAAARSLNLSNAVAVVVFEALRQ 147 >gi|226310665|ref|YP_002770559.1| tRNA/rRNA methyltransferase [Brevibacillus brevis NBRC 100599] gi|226093613|dbj|BAH42055.1| putative tRNA/rRNA methyltransferase [Brevibacillus brevis NBRC 100599] Length = 156 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 1/150 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I RS A + ++ L ++ + Sbjct: 1 MPLHIVLHEPLIPANTGNIARSCAATGAHLHLIHPLGFSTDDRYLKRAGLDYWHAVNVHH 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250 + ++ + + +K D +ILG E GL + E Sbjct: 61 HESFEHFVEAQGEGAGTFYFVETWGEKLYTDVAFRDGDYIILGKETTGLPEELTEKYREQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G +++N+SN AA+ L+ Sbjct: 121 TIRIPMSGATRSVNLSNCAAIVLFEGLRQL 150 >gi|332654005|ref|ZP_08419749.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16] gi|332517091|gb|EGJ46696.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16] Length = 171 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 42/148 (28%), Gaps = 3/148 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I R+ A + + ++ + Sbjct: 1 MLNIVLVEPEIPQNCGNIARTCAATRSRLHLIEPLGFDISEKAVRRAGLDYWPMVDLRVY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT-QETATSM 251 NL + + + + D L G E GL + Sbjct: 61 RNLEHFFAENPNPDLWLATTKA--PQDYTGATFRDNCYLFFGKETAGLPEEFRLAHYDRC 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN+ A+ Y Sbjct: 119 IRIPMRADARSLNLSNSVAILAYEALRQ 146 >gi|221199931|ref|ZP_03572974.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia multivorans CGD2M] gi|221207400|ref|ZP_03580409.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia multivorans CGD2] gi|221172603|gb|EEE05041.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia multivorans CGD2] gi|221180170|gb|EEE12574.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia multivorans CGD2M] Length = 156 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A + ++ E+ Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + ++ + G+E +GL + E A Sbjct: 61 RDWDAFVAAESPDLARIFAFTTRGSSRFHDRAFLPGDWFVFGSETRGLPAELLERFPAEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++N+SN AV ++ Sbjct: 121 RVRLPMRPGNRSMNLSNTVAVVVFEAWRQ 149 >gi|313471789|sp|Q21LN7|TRML_SACD2 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL Length = 154 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R C + + L ++ E + Sbjct: 1 MFNIVLFEPEIPPNTGNIIRVCANTGCRLHLIEPLGFELDDKRLRRAGLDYGEWQSVVTH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 +N +++ + + L+ G E +GL + E + Sbjct: 61 ANWDAFIKQQAPERLWALSTKGTKFHHEVSI--GEGDYLVFGPETRGLPMEILEYITFDN 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M +++N+SNAA+V +Y Sbjct: 119 VLRIPMLPNSRSMNLSNAASVMVYEAWRQL 148 >gi|153815564|ref|ZP_01968232.1| hypothetical protein RUMTOR_01800 [Ruminococcus torques ATCC 27756] gi|317502183|ref|ZP_07960357.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088748|ref|ZP_08337658.1| hypothetical protein HMPREF1025_01241 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847206|gb|EDK24124.1| hypothetical protein RUMTOR_01800 [Ruminococcus torques ATCC 27756] gi|316896392|gb|EFV18489.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|330407271|gb|EGG86774.1| hypothetical protein HMPREF1025_01241 [Lachnospiraceae bacterium 3_1_46FAA] Length = 167 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Query: 225 KNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ G E G+ + + + + M G I++LN+ N+ AV LY Sbjct: 91 YEPDCYIMFGKESAGIPEEILVDHEDTCVRIPMMGQIRSLNLGNSVAVVLYEALRQ 146 >gi|311746904|ref|ZP_07720689.1| tRNA guanosine-2'-O-methyltransferase [Algoriphagus sp. PR1] gi|126578593|gb|EAZ82757.1| tRNA guanosine-2'-O-methyltransferase [Algoriphagus sp. PR1] Length = 234 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 6/151 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R +VL+++ PHN A+LR+ F + ++ + + + Sbjct: 35 QRTRHFTVVLENIYKPHNASAVLRTCDCFGIQDVHIIEKTREYKVNPFVTRGASQWLTLH 94 Query: 189 YIRISNLTDALQKMHSW------GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + +P++ N+KIAL+ G E +G+ Sbjct: 95 KYFQPEEPENAVINCFSSLKSNGFKIYGTSPDPQTRPIQDLDPNEKIALVFGNEHEGISN 154 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + A + H+ M G ++ N+S AA++ L Sbjct: 155 EVKNAADGLVHIPMRGFTESFNISVAASLFL 185 >gi|256025663|ref|ZP_05439528.1| putative tRNA/rRNA methyltransferase YibK [Escherichia sp. 4_1_40B] Length = 157 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPIGFAWDDKRLRRAGLDY--HEFTAVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + L++ D L+ G E +GL + A Sbjct: 59 RHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|157691625|ref|YP_001486087.1| rRNA methyltransferase-like protein [Bacillus pumilus SAFR-032] gi|194014805|ref|ZP_03053422.1| RNA methyltransferase, TrmH family, group 2 [Bacillus pumilus ATCC 7061] gi|157680383|gb|ABV61527.1| rRNA methyltransferase-like protein [Bacillus pumilus SAFR-032] gi|194013831|gb|EDW23396.1| RNA methyltransferase, TrmH family, group 2 [Bacillus pumilus ATCC 7061] Length = 157 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + + ++ +L ++ ++ + Sbjct: 1 MGLHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWKYANVVY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQET-AT 249 +L + + F I ++ + G E GL E Sbjct: 61 HDSLDELFEAHPKGQFFYITKFGQKPHTTFDYSQLDEDYFFVFGRETSGLPKDLIERNMD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++LN+SN AA+ +Y Sbjct: 121 RCLRLPMTEHVRSLNLSNTAAILVYEALRQ 150 >gi|302843184|ref|XP_002953134.1| hypothetical protein VOLCADRAFT_63297 [Volvox carteri f. nagariensis] gi|300261521|gb|EFJ45733.1| hypothetical protein VOLCADRAFT_63297 [Volvox carteri f. nagariensis] Length = 182 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 2/144 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ V+ HNIG I+RSA AF + + A A +H ++ Sbjct: 25 FIITHSVSKRHNIGTIVRSATAFGVKEVCLVGSRQFNTFGSHGSDAHVAFKHFDTLQQCV 84 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + I + + A +LG EG+GL + ++ Sbjct: 85 QHLKDVEGCRVLGIEICEGALPVHEHPFTG-SSPTAFLLGNEGQGLSERQMALCDGFVYI 143 Query: 255 HMPG-IIKALNVSNAAAVALYITQ 277 G +LNV+ AA++ L+ Sbjct: 144 PQHGPGTASLNVAVAASIVLHHFA 167 >gi|153810968|ref|ZP_01963636.1| hypothetical protein RUMOBE_01359 [Ruminococcus obeum ATCC 29174] gi|149832856|gb|EDM87939.1| hypothetical protein RUMOBE_01359 [Ruminococcus obeum ATCC 29174] Length = 166 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ G E G+ + E + + M I++LN+SN+ A+ LY Sbjct: 88 YTDVQYEEDCYIMFGKESAGIPEEILMEHKDNCVRIPMINEIRSLNLSNSVAIVLYEALR 147 Query: 279 H 279 Sbjct: 148 Q 148 >gi|218134808|ref|ZP_03463612.1| hypothetical protein BACPEC_02711 [Bacteroides pectinophilus ATCC 43243] gi|217990193|gb|EEC56204.1| hypothetical protein BACPEC_02711 [Bacteroides pectinophilus ATCC 43243] Length = 165 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 3/148 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I R+ VA + ++ ++ + + Sbjct: 1 MINIVLHEPEMPANTGNIGRTCVAAGARLHLIEPLGFHINEKMVKRAGLDYWDKLDVTVY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 N D L+K + D ++ G E G+ + + Sbjct: 61 DNYEDFLEKNPGAKIYMATTKAPHTYCD--VRYEDDCYIMFGKESAGIPEDILVQHPDTA 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G I++LN+SN+ A+ LY Sbjct: 119 IRIPMIGDIRSLNLSNSVAIVLYEALRQ 146 >gi|291544815|emb|CBL17924.1| rRNA methylase, putative, group 2 [Ruminococcus sp. 18P13] Length = 172 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 4/150 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 QL +VL P N G I R+ + + L++ + Sbjct: 1 MHQLNIVLVEPQIPQNTGNIARTCAVTGARLHLIRP---MGFTVTDKHLKRAGLDYWDKL 57 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT 249 I+ + ++ +K + + LI G E +GL Sbjct: 58 DITYYDSFAEFSARNPGAYFFFTTKGRKIHSDAVYPNNAYLIFGREDQGLPEDLLFAHPE 117 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN+ A+A+Y Sbjct: 118 ECVRIPMRNELRSLNLSNSVAIAVYEALRQ 147 >gi|265752733|ref|ZP_06088302.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_33FAA] gi|263235919|gb|EEZ21414.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_33FAA] Length = 178 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 3/161 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L +VLD V HNIG++ R++ AF D I + + K+A GA Sbjct: 16 EFKKADKLPLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 + + N DA+Q++H GF + + + + K A+++G E KG++ Sbjct: 76 NSVEWRYKKNTLDAVQELHDQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + G +LNVS + ++ N K Sbjct: 136 QEVVNACDGCIEIPQYGTKHSLNVSVTTGIIVWEFVNKLMK 176 >gi|308810773|ref|XP_003082695.1| CR004 protein (ISS) [Ostreococcus tauri] gi|116061164|emb|CAL56552.1| CR004 protein (ISS) [Ostreococcus tauri] Length = 308 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P+ A++ G E G+ + + + + M G ++LN+S AAA+ + Sbjct: 151 YPMSHYDWTIPTAVVFGNEKTGVSEEARAMSDGGVFIPMYGFTESLNISVAAALVMSHA 209 >gi|311032447|ref|ZP_07710537.1| putative rRNA methylase [Bacillus sp. m3-13] Length = 163 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + + ++ +L ++ E + + Sbjct: 1 MGLHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQE-TAT 249 +L + +K F I K DK + G E GL + Sbjct: 61 YDSLDELFEKNKEAEFFYITKFGMKPHTSFDYSKLDKDYFFVFGRETTGLPKDLIQSNLD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++LN+SN AA+ +Y Sbjct: 121 QCLRLPMTKNVRSLNLSNTAAILIYEALRQ 150 >gi|239917665|ref|YP_002957223.1| rRNA methylase [Micrococcus luteus NCTC 2665] gi|281413844|ref|ZP_06245586.1| rRNA methylase [Micrococcus luteus NCTC 2665] gi|239838872|gb|ACS30669.1| rRNA methylase [Micrococcus luteus NCTC 2665] Length = 280 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 54/263 (20%), Positives = 93/263 (35%), Gaps = 15/263 (5%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I L D A Y M + R ++ V AL+ Sbjct: 12 ERIEDLADPRLA-------PYTTMTDAALRRRVDAEHGVFLAESSQVVRRALDAGHTP-R 63 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 L PV T P ++ + G LA P P D + Sbjct: 64 SFLLGDRYRGSFADVLAAHPDVPVFTGPDDVLEALTGFHLHRGALAAMDRPAPRPLADVL 123 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++ +++ + V D N+GA++RSAVA D ++ T + + + + G + +P+ Sbjct: 124 AGARRVLIAEDVVDHTNLGAVVRSAVALGWDALLLTPQAADPLYRRAIRVSMGTVFRLPW 183 Query: 190 IRISNLTDALQKMHSWGFQ-------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 R+ T +E +++AL+LG EG G+RP Sbjct: 184 ARLPGPVAESLPALRAAGFAVAALEVTERAVGLDSPEIEPLRTAERLALVLGQEGPGVRP 243 Query: 243 KTQETATSMAHLHMPGIIKALNV 265 +T + + MP + +LNV Sbjct: 244 ETLAQTDADVVIPMPDGVDSLNV 266 >gi|147905554|ref|NP_001085673.1| RNA methyltransferase-like protein 1 [Xenopus laevis] gi|82184432|sp|Q6GPJ4|RMTL1_XENLA RecName: Full=RNA methyltransferase-like protein 1 gi|49116890|gb|AAH73125.1| MGC84529 protein [Xenopus laevis] Length = 419 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 34/324 (10%), Positives = 76/324 (23%), Gaps = 61/324 (18%) Query: 18 SHYAKLRRNHRDYKKMQSF---NQKSRHTSQPENLFLYGVHTVSAALNNPS--------R 66 +H + R K++ + + + + L G ++ AL++ + R Sbjct: 84 AHEFRYERALPGDKRLSKVVTIAKSKKFRDRHGQVLLEGQRLLTDALDSGAVLQTLFFSR 143 Query: 67 KIFQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLAL-------- 116 + + L + + + V PQ + I K + Sbjct: 144 VDYLKEFPPDKLRKTNLIKVNFENIKIWSDLVTPQGLMGIFAKPDHVKMTYPDTQTKHTL 203 Query: 117 -----------------------------------ETAPLLSPTLDAVRNSQLLMVLDHV 141 L A + + + Sbjct: 204 PLSLICDNIRDPGNLGTILRCAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRLPIITS 263 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 D + L + + S G + P Sbjct: 264 LDWDIVPNYLPAGTKVFLADNFRPDNQNKPAEVSEKASDYGWVATDPKRIFITEDGYESS 323 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPK---TQETAT-SMAHLHM 256 + E A+++G E GL + E + ++ + Sbjct: 324 SDEEDNTDKLYIPGLEVQSYFERWAQGPCAVVIGGETHGLSIESLLLAEKSNGKRLNIPV 383 Query: 257 PGIIKALNVSNAAAVALYITQNHF 280 I +LN + AA++ L+ + Sbjct: 384 VPGIDSLNSAMAASILLFEGKRQI 407 >gi|269976319|ref|ZP_06183315.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris 28-1] gi|306817739|ref|ZP_07451481.1| RNA methyltransferase [Mobiluncus mulieris ATCC 35239] gi|269935648|gb|EEZ92186.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris 28-1] gi|304649553|gb|EFM46836.1| RNA methyltransferase [Mobiluncus mulieris ATCC 35239] Length = 354 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 66/327 (20%), Positives = 118/327 (36%), Gaps = 62/327 (18%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTV-SAALNNPS 65 ++I + K + + +R+ K + ++ ++G + V AA+ Sbjct: 31 AYRDRIAAEKKATHTNAQRSRAAAKDHYRPHTRA------GAELIFGRNPVSEAAVAGVP 84 Query: 66 RKIFQLLATKNALARLDWDANLP------------------------HPFPVKTVPPQTI 101 K + +T +L + Q + Sbjct: 85 FKRLFVASTIMKDPKLAKVVERASASGVPLRECSAADLDRLTEGGVHQGIAAELCAYQYL 144 Query: 102 DKIVGK----------------------EAVHQGLALETAPLLSPTLDAVR--------N 131 D + AVH+ + L + Sbjct: 145 DVMELWDLAVARAEAAGRAASAGCAVVSPAVHEVPSGVLGETPKSDLAPHETVATKPPTH 204 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL+ LD V DPHN+GA+LRSA AF DG+I + + S +A K ++GA +P + Sbjct: 205 PPLLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIVPVAQ 264 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATS 250 +NLT ALQ + G IGL L D + ++ G+EG+G+ ++T Sbjct: 265 ATNLTRALQDLKRAGAFVIGLDGGGDVALPDLQLTDVPLVVVTGSEGRGISRLVRDTCDQ 324 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + +++LN + A +ALY Sbjct: 325 IVSIPIAPRMESLNAAVATGIALYQIA 351 >gi|227876792|ref|ZP_03994901.1| TrmH family tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] gi|227842689|gb|EEJ52889.1| TrmH family tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] Length = 354 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 66/327 (20%), Positives = 118/327 (36%), Gaps = 62/327 (18%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTV-SAALNNPS 65 ++I + K + + +R+ K + ++ ++G + V AA+ Sbjct: 31 AYRDRIAAEKKATHTNAQRSRAAAKDHYRPHTRA------GAELIFGRNPVSEAAVAGVP 84 Query: 66 RKIFQLLATKNALARLDWDANLP------------------------HPFPVKTVPPQTI 101 K + +T +L + Q + Sbjct: 85 FKRLFVASTIMKDPKLAKVVERASASGVPLRECSAADLDRLTEGGVHQGIAAELCAYQYL 144 Query: 102 DKIVGK----------------------EAVHQGLALETAPLLSPTLDAVR--------N 131 D + AVH+ + L + Sbjct: 145 DVMELWDLAVARAEAAGCAASAGCAVVSPAVHEVPSGVLGETPKSDLAPHETVATKPPTH 204 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 LL+ LD V DPHN+GA+LRSA AF DG+I + + S +A K ++GA +P + Sbjct: 205 PPLLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIVPVAQ 264 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATS 250 +NLT ALQ + G IGL L D + ++ G+EG+G+ ++T Sbjct: 265 ATNLTRALQDLKRAGAFVIGLDGGGDVALPDLQLTDVPLVVVTGSEGRGISRLVRDTCDQ 324 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + +++LN + A +ALY Sbjct: 325 IVSIPIAPRMESLNAAVATGIALYQIA 351 >gi|238794389|ref|ZP_04638000.1| Methyltransferase [Yersinia intermedia ATCC 29909] gi|238726290|gb|EEQ17833.1| Methyltransferase [Yersinia intermedia ATCC 29909] Length = 165 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 46/153 (30%), Gaps = 5/153 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R C + + L ++ E Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFASIKHH 60 Query: 193 SNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-- 247 + L + Q L + L+ G E +GL + Sbjct: 61 HDYQAFLDCENLDSAQPARLFALTTKGTPAHSAVSYQADDYLLFGPETRGLPASVLDALP 120 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M +++N+SNA +V +Y Sbjct: 121 AQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 153 >gi|319764160|ref|YP_004128097.1| tRNA/rRNA methyltransferase (spou) [Alicycliphilus denitrificans BC] gi|330826483|ref|YP_004389786.1| tRNA/rRNA methyltransferase SpoU [Alicycliphilus denitrificans K601] gi|317118721|gb|ADV01210.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans BC] gi|329311855|gb|AEB86270.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans K601] Length = 158 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R A C + E ++ ++ E+ R Sbjct: 1 MFHIVLVEPEIPPNTGNVIRLAANTGCMLHLVEPLGFSMEDRLMRRAGLDYHEYAEVRRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 S T L+ M + L++ + + ++ GAE +GL P+ +ET Sbjct: 61 SGWTALLRDMRPDPSRMFALTTHGTRSVYDAGFLPGDWMVFGAESRGLPPELRETFPPAQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV +Y Sbjct: 121 RLRLPMLPGQRSLNLSNAVAVTVYEAWRQ 149 >gi|262197612|ref|YP_003268821.1| tRNA/rRNA methyltransferase (SpoU) [Haliangium ochraceum DSM 14365] gi|262080959|gb|ACY16928.1| tRNA/rRNA methyltransferase (SpoU) [Haliangium ochraceum DSM 14365] Length = 231 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 57/149 (38%), Gaps = 3/149 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + +++++DPHN A++RS A + + + + S + + Sbjct: 48 LTVAIENLHDPHNGAAVVRSVEAVGLTSLHVAEPIERFQFSPAVAIGSEKWIRVLRHQGF 107 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + + ++ + A++ G E +GL + + + Sbjct: 108 TACARILRGAGFRMYAACPDAEMSMDDIDV--SQPSAVVFGNEHEGLSRRAIDACDAKVA 165 Query: 254 LHMPGIIKALNVSNAAAVALYI-TQNHFA 281 + M G ++LN+S + AV+++ A Sbjct: 166 IPMHGFTQSLNLSVSVAVSIFQLAARRRA 194 >gi|17986753|ref|NP_539387.1| ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|225627988|ref|ZP_03786024.1| ribosomal RNA methyltransferase [Brucella ceti str. Cudo] gi|237815940|ref|ZP_04594937.1| ribosomal RNA methyltransferase [Brucella abortus str. 2308 A] gi|260884279|ref|ZP_05895893.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|261222685|ref|ZP_05936966.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94] gi|261315717|ref|ZP_05954914.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261318155|ref|ZP_05957352.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94] gi|261755493|ref|ZP_05999202.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686] gi|261758724|ref|ZP_06002433.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] gi|265989186|ref|ZP_06101743.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|265991600|ref|ZP_06104157.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|265995438|ref|ZP_06107995.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|265998649|ref|ZP_06111206.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1] gi|265999372|ref|ZP_05466026.2| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|17982380|gb|AAL51651.1| ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|225617151|gb|EEH14197.1| ribosomal RNA methyltransferase [Brucella ceti str. Cudo] gi|237789238|gb|EEP63449.1| ribosomal RNA methyltransferase [Brucella abortus str. 2308 A] gi|260873807|gb|EEX80876.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|260921269|gb|EEX87922.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94] gi|261297378|gb|EEY00875.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94] gi|261304743|gb|EEY08240.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261738708|gb|EEY26704.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] gi|261745246|gb|EEY33172.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686] gi|262553273|gb|EEZ09107.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1] gi|262766551|gb|EEZ12340.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263002384|gb|EEZ14959.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|263093517|gb|EEZ17551.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|264661383|gb|EEZ31644.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1] Length = 171 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 1/164 (0%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 D +L + L + P N G ILR A + L ++ Sbjct: 1 MQPCGFHDTGFPMELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRA 60 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 LE R + + G + + LS+ + P + L+ G E G Sbjct: 61 GMDYLEQAALTRHPDWNRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAG 120 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282 + + A + M ++LN++ + A+ +K Sbjct: 121 VPEAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 164 >gi|121601762|ref|YP_989293.1| RNA methyltransferase [Bartonella bacilliformis KC583] gi|120613939|gb|ABM44540.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583] Length = 271 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 100/250 (40%), Gaps = 6/250 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 + + +K Q G +SA L++ + LL L + Sbjct: 14 PRLESYHNIREKDLTRRQH-QFVAEGKVVLSALLHSKNFSTLSLLVVAARLLEIMPILKE 72 Query: 88 PHP-FPVKTVPPQTIDKIVGKEAVHQG---LALETAPLLSPTLDAVRNSQLLMVLDHVND 143 P + VP + +D I G + P L L + L+ VL +++ Sbjct: 73 TKPTCSIYCVPQKIMDDIAGFHVHRGMLGIGERKALPSLQEFLQDLPERALVPVLCGISN 132 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+GAI R+A AF+ GII K + +S+ GA IPY + +++ ++ + Sbjct: 133 NENMGAIFRNAAAFASYGIIVDKTSCDPLDRTVIRSSVGATLRIPYTQGNDIESIIKTLS 192 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 F LS + + L++ ALILG EG L + + + + M +L Sbjct: 193 DANFHLYALSPSAPRYLKEAKTMKHTALILGTEGDSLPTHVLQKS-EILRIPMAYGFDSL 251 Query: 264 NVSNAAAVAL 273 N++ A+ +AL Sbjct: 252 NIATASGLAL 261 >gi|281356874|ref|ZP_06243364.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] gi|281316432|gb|EFB00456.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] Length = 253 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 76/251 (30%), Gaps = 12/251 (4%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 ++S + + GV V + +AT+ LA + Sbjct: 11 LRSLYTR-HGRRKSGYCVCEGVRAVGELFARRPELVRFTVATERGLAEYGPVSGAL---- 65 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 ++ + G G+ A P + + LD + DP N G + R Sbjct: 66 -YSLSESRFAEFAGTVNSQ-GILAVAAIPAPPGEETPPEVPFIFALDGLGDPGNFGTVCR 123 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 + + D + TK +S G + NL +G+ + L Sbjct: 124 TLRSTGLDELWYTKGSIDPYGDKAIRSGLGVQFALKLRCFENLETLRAAAARFGYDKVFL 183 Query: 213 SSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + + + +++G E G+ + MPG ++LN + AA Sbjct: 184 TDPHQGESCFTAPDLFQRSVVVIGGEANGVNDLAAAR---RVTIPMPGNYESLNAAQAAT 240 Query: 271 VALYITQNHFA 281 V L+ Sbjct: 241 VFLFEYVRRLT 251 >gi|110005185|emb|CAK99512.1| putative trna /rrna methyl transferase protein [Spiroplasma citri] Length = 174 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 56/154 (36%), Gaps = 1/154 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++ ++L N+GAI+R+ VA + + + + +S++ ++ Sbjct: 1 MKTTKKINIILFEPEIAQNVGAIMRTCVAINAKLHLIEPFGFIFDERFITRSSANYVDFA 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246 Y ++ LQ + + K++KI ++ G E G+ E Sbjct: 61 DYETYNDWNHFLQLNPNLKLYCATRYAQQPHSAIDFTKDEKIFILFGRESTGIPTAILKE 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++LNV+N + Y Sbjct: 121 HLARTFRIPMSEKVRSLNVANTVGIVGYEIMRQL 154 >gi|311277468|ref|YP_003939699.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter cloacae SCF1] gi|308746663|gb|ADO46415.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter cloacae SCF1] Length = 157 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H + Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFTAVV 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + A + L++ D L+ G E +GL + A Sbjct: 59 RHHDYAAFADAEKPQRLFALTTKGTPAHSAVSYRDGDYLMFGPETRGLPASILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|124023171|ref|YP_001017478.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9303] gi|123963457|gb|ABM78213.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus str. MIT 9303] Length = 166 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 50/162 (30%), Gaps = 9/162 (5%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D S L + L P N G I R+ AF + + L ++ H Sbjct: 3 DPSELSPLRVALYEPRIPPNTGNIARTCAAFRIPLALIEPLGFSLDDRYLRRAGLDYWPH 62 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + S+L + + L+ G E GL K ++ Sbjct: 63 VALSVHSDLDTFRECLPLNHRLIGCSRFGGIPLRSM-RFQTGDVLLFGREDTGLPTKIRQ 121 Query: 247 TATSMAHLHMP--------GIIKALNVSNAAAVALYITQNHF 280 + + MP G +++LN+S A A+ + Sbjct: 122 QCDQITTIPMPGAASEQGQGGVRSLNLSVACAIVSFEAGQQL 163 >gi|192362257|ref|YP_001982863.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107] gi|190688422|gb|ACE86100.1| RNA methyltransferase, TrmH family, group 2 [Cellvibrio japonicus Ueda107] Length = 154 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R A C + + + ++ E Sbjct: 1 MFHIVLFEPEIPPNTGNIIRLAANTGCQLHLIEPLGFNLDEKSVTRAGMDYAETQDVRIH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 ++ L + + + L+ G E +GL +E+ A Sbjct: 61 ASWEHFLVQEQPTRLFALSTKG--SQCHSDAQFAAGDYLLFGPESRGLPADIRESLPANQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M +++N+SNA AV +Y Sbjct: 119 VLRIPMAANSRSMNLSNAVAVMVYEAWRQL 148 >gi|238917775|ref|YP_002931292.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium eligens ATCC 27750] gi|238873135|gb|ACR72845.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium eligens ATCC 27750] Length = 165 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 3/148 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I R+ VA + +L ++ + + Sbjct: 1 MLNIVLHEPEMPANTGNIGRTCVATGARLHLIGPLGFKINDKMLKRAGLDYWDKLDVTEY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 + D L K + + ++ G E G+ + + + Sbjct: 61 DDYNDFLAKNPGAKVYMATTKAHKTYTE--VNYEEDCYIMFGKESAGIPEEILVDNEDTC 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G I++LN+SN+ A+ LY Sbjct: 119 IRIPMIGDIRSLNLSNSVAIVLYEALRQ 146 >gi|227825173|ref|ZP_03990005.1| RNA methyltransferase [Acidaminococcus sp. D21] gi|226905672|gb|EEH91590.1| RNA methyltransferase [Acidaminococcus sp. D21] Length = 155 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 1/66 (1%) Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + LI G E GL + + M ++LN++N+ ++ L Sbjct: 80 HAHRSYTRVEYTKDSLLIFGKESAGLPEAFRMAHEDECIRIPMVPEARSLNLANSVSIVL 139 Query: 274 YITQNH 279 Y Sbjct: 140 YEALRQ 145 >gi|295697073|ref|YP_003590311.1| RNA methyltransferase, TrmH family, group 2 [Bacillus tusciae DSM 2912] gi|295412675|gb|ADG07167.1| RNA methyltransferase, TrmH family, group 2 [Bacillus tusciae DSM 2912] Length = 157 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 3/152 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + +VL P N G + R+ A + + L ++ + Sbjct: 1 MERRPFHVVLVEPEIPPNTGNVARTCAATGTVLHLVRPLGFEVDDRHLRRAGLDYWHWVH 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 D L++ F K+ + L+ G E +GL E Sbjct: 61 VEYHDRFEDLLEEHPEGRFFYFSTKG--KRQYAEVRYRPGDFLVFGKETRGLPDALLERF 118 Query: 249 -TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN+ A+AL+ Sbjct: 119 PEQTLRIPMRPDIRSLNLSNSVALALFEALRQ 150 >gi|295092497|emb|CBK78604.1| Predicted rRNA methylase (SpoU class) [Clostridium cf. saccharolyticum K10] Length = 180 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268 ++ + + ++ G E +G+ + + + M G I++LN+SN+ Sbjct: 75 YMATTKAPNVYTEASYEPDCYIMFGPESRGIPEDILVQHQETCVRIPMWGDIRSLNLSNS 134 Query: 269 AAVALYITQNH 279 ++ LY Sbjct: 135 VSIILYEALRQ 145 >gi|86607760|ref|YP_476522.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556302|gb|ABD01259.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 152 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 3/148 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + L ++ +H+ R Sbjct: 1 MPFHVVLVAPEIPANTGNIARTCAATDTPLHLVDPLGFRLSDRYLKRAGLDYWQHVQLYR 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + +Q F + + L+ G+E +GL P ET Sbjct: 61 YPSWSALVQAHPEARFWCFSVRGKALYTE--VTYQPGDWLVFGSESRGLDPLFLET-YPS 117 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + + G +++LN+SNA A+AL+ Sbjct: 118 VRIPLRGPVRSLNLSNAVAIALFEALRQ 145 >gi|254719580|ref|ZP_05181391.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. 83/13] gi|306837931|ref|ZP_07470791.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653] gi|306407019|gb|EFM63238.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653] Length = 159 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 1/152 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +L + L + P N G ILR A + L ++ LE R Sbjct: 1 MELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTR 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + G + + LS+ + P + L+ G E G+ + A Sbjct: 61 HPDWHRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVSEAIHDNADER 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282 + M ++LN++ + A+ +K Sbjct: 121 LLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 152 >gi|288549949|ref|ZP_06390860.1| putative tRNA/rRNA methyltransferase [Enterobacter cancerogenus ATCC 35316] gi|288317311|gb|EFC56249.1| putative tRNA/rRNA methyltransferase [Enterobacter cancerogenus ATCC 35316] Length = 199 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 6/197 (3%) Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVN 142 + V + K G E H G+ T+ ++ L+ V Sbjct: 2 AANRKAYHVVDDAELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAEADDCVLALEDVG 60 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 +PHN+GA++RS F G++ + + ES ++A G EH+ I ++ DA+++ Sbjct: 61 NPHNLGAMMRSCAHFGVKGVLL-QDAALLESGAAIRTAEGGAEHVQPITGDSVLDAIEQF 119 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 G+ + SS + PL + K+ L+LG E GL +A + G +++ Sbjct: 120 RKAGYSIVTTSSHAATPLFKATLPRKMVLVLGQERDGLSDAALSSADLSVSIDGTGNVES 179 Query: 263 LNVSNAAAVALYITQNH 279 LNVS A V L Sbjct: 180 LNVSVATGVLLAEWWRQ 196 >gi|87125512|ref|ZP_01081357.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9917] gi|86166812|gb|EAQ68074.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9917] Length = 277 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 86/270 (31%), Gaps = 19/270 (7%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARL 81 R + ++++S Q+S Q L L G H + L + P + ++ A Sbjct: 4 SRRNPLVRRLRSLAQRS-GREQEGLLLLEGAHLLQEVLRSQSPQTGLEVIVTPAWLEAHP 62 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + + V + + + + L + ++ ++ LD V Sbjct: 63 NALSAWEGSVRWHHVSDEVLQAALSTLHP---DGVACLLPLEALPEPPGHTSFVLALDRV 119 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA-------------SGALEHIP 188 DP N+G +LR+A+A + ++ P V+ S+ Sbjct: 120 QDPGNLGTLLRTALAADVELVLLASGADPLSPKVVRSSSGAVLTLAQERLGPEERQGVRA 179 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + P + AL+LG EG GL P+ Sbjct: 180 LAERLQDLRCDGLQVVATLVPDASAPVEVLPYWELDWTRPTALVLGNEGSGLHPELLACC 239 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L +++LNV+ AA L + Sbjct: 240 SHGVTLPHSPRVESLNVAAAAVPLLLERRR 269 >gi|304398991|ref|ZP_07380860.1| RNA methyltransferase, TrmH family, group 2 [Pantoea sp. aB] gi|304353451|gb|EFM17829.1| RNA methyltransferase, TrmH family, group 2 [Pantoea sp. aB] Length = 157 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFAWDDKRLRRAGLDY--HEFTAIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + L++ L+ G E +GL + A Sbjct: 59 FHADYQAFIATESPERLFALTTKGTPAHSAVAYQAGDYLLFGPESRGLPAEILAALPAQQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMRAESRSMNLSNAVSVVVYEAWRQL 148 >gi|326201331|ref|ZP_08191203.1| RNA methyltransferase, TrmH family, group 2 [Clostridium papyrosolvens DSM 2782] gi|325988899|gb|EGD49723.1| RNA methyltransferase, TrmH family, group 2 [Clostridium papyrosolvens DSM 2782] Length = 164 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 1/98 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 G ++ + D ++ G E GL + Sbjct: 52 YWDEADVRYYNNINEFFEKFPGKTFYYSTTKAVNNYCDVQFEDDSFILFGKETAGLPEEL 111 Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M I++LN+SN+ A+ LY Sbjct: 112 LRDNKEYCIRIPMKKGIRSLNLSNSVAIVLYEALRQQN 149 >gi|255023881|ref|ZP_05295867.1| rRNA methylase [Listeria monocytogenes FSL J1-208] Length = 131 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 60/131 (45%) Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G ++R+A A D ++ K + + + +S G+ HIP I+ Sbjct: 1 GTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPVIQADLFEWIANLEEEGVP 60 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + D K L K D +AL++G EG G+ P+ Q+ + ++ + G ++LNV+ Sbjct: 61 VIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRLSEKVYIPIYGDSESLNVAV 120 Query: 268 AAAVALYITQN 278 AA + LY + Sbjct: 121 AAGILLYGLRK 131 >gi|90020777|ref|YP_526604.1| putative tRNA/rRNA methyltransferase [Saccharophagus degradans 2-40] gi|89950377|gb|ABD80392.1| RNA methyltransferase TrmH, group 2 [Saccharophagus degradans 2-40] Length = 177 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 4/156 (2%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 R + +VL P N G I+R C + + L ++ E Sbjct: 18 QQNRLNMFNIVLFEPEIPPNTGNIIRVCANTGCRLHLIEPLGFELDDKRLRRAGLDYGEW 77 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + +N +++ + + L+ G E +GL + E Sbjct: 78 QSVVTHANWDAFIKQQAPERLWALSTKGTKFHHEVSI--GEGDYLVFGPETRGLPMEILE 135 Query: 247 TA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + M +++N+SNAA+V +Y Sbjct: 136 YITFDNVLRIPMLPNSRSMNLSNAASVMVYEAWRQL 171 >gi|332994658|gb|AEF04713.1| putative tRNA/rRNA methyltransferase [Alteromonas sp. SN2] Length = 154 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + + ++ H Sbjct: 1 MLDIVLYQPEIPPNTGNIIRLCANSGFMLHLIEPLGFEWDDKRVRRAGLDY--HEFAHVK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + ++ K AL+ G E +GL + Sbjct: 59 RHASLDAYIESEKPSRIFACTTKGKAFHSDAQYKKGDALLFGPETRGLPDDVIDALPPEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y + Sbjct: 119 RVRIPMLPDSRSMNLSNAVSVFVYESWRQL 148 >gi|332881584|ref|ZP_08449233.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680582|gb|EGJ53530.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 180 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 3/157 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 V L++VLDHV +N+G++ RS+ AF + + + K+A GA Sbjct: 20 EFKTVEKLPLIVVLDHVRSLYNVGSVFRSSDAFRVASVYLCGITATPPQVEIHKTALGAE 79 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLR 241 + + ++ DA++ + + G++ + + Q+ + DK A+ILG E KG++ Sbjct: 80 DSVNWVYYERTQDAVEHLKAEGYEVWAVEQVEGSIMLQDFQPDKAKKYAIILGNEVKGVQ 139 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + + G +LNVS A + ++ Sbjct: 140 QEVVDQCDGCIEIPQFGTKHSLNVSVTAGILVWEFAR 176 >gi|307611358|emb|CBX01019.1| hypothetical protein LPW_27211 [Legionella pneumophila 130b] Length = 149 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 42/147 (28%), Gaps = 3/147 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + L P N G I+R + E + ++ H + Sbjct: 1 MIHIALYQPEIPPNTGNIIRLCANTGAQLHLIHPLGFTLEDKQMRRAGLDY--HQWASIL 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + S+ K L+ G E GL + S Sbjct: 59 HYENWQTFLQSHSQRRLYCCSAKGKVKYSDVDYKADDILLFGPESCGLPQQILNQ-YSTI 117 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ LY Sbjct: 118 RIPMRENNRSLNLSNAVAIILYEAWRQ 144 >gi|120612549|ref|YP_972227.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1] gi|120591013|gb|ABM34453.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1] Length = 158 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R A C + E ++ ++ E+ + Sbjct: 1 MFHIVLVEPEIPPNTGNVIRLAANTGCILHLVEPLGFSMEDKLMKRAGLDYHEYAEVRQH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + T L+ + +++ + + + + GAE +GL P+ ++ Sbjct: 61 AGWTAFLRDAQPNPERVFAMTTHGVHTVYESLFLPGDWFVFGAESRGLPPELRDAFPPAQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV +Y Sbjct: 121 RLRLPMLPGQRSLNLSNAVAVTVYEAWRQ 149 >gi|300789967|ref|YP_003770258.1| rRNA methylase [Amycolatopsis mediterranei U32] gi|299799481|gb|ADJ49856.1| rRNA methylase [Amycolatopsis mediterranei U32] Length = 249 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 83/239 (34%), Gaps = 13/239 (5%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV----KTV 96 R S+P+ + L G H + AL + AL +L + + +TV Sbjct: 11 RLRSRPDVVVLEGFHAIKHALRFGGAVDAVVTTDTAALRKLAQELAPDVEDAITAHAQTV 70 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I +++G+ + AL P + + + ++L++ + NIGA++R A Sbjct: 71 SAAEIAQLLGRVHQTEVAALARRPAWPESARSADRASPAVLLENPRNLGNIGAVIRVAAG 130 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + +T P + L I + Sbjct: 131 LGLSSVYSTGTVDPWHP---------TVIRGSAGLHYALPVRRLAGIHEAEGPIYSLDPA 181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L + + L G+E G+ P+ + + + + M + + N++ + A+A Y Sbjct: 182 GIDLREAVIPQDALLAFGSERSGISPELRRHSDVLLSIPMRAEVSSYNLTTSVAMAAYH 240 >gi|289704605|ref|ZP_06501036.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58] gi|289558669|gb|EFD51929.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58] Length = 280 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 54/263 (20%), Positives = 95/263 (36%), Gaps = 15/263 (5%) Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 E+I L D A Y M + R ++ V AL+ Sbjct: 12 ERIEDLADPRLA-------PYTTMTDAALRRRVDAEHGVFLAESSQVVRRALDAGHTP-R 63 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 L PV T P ++ + G LA P P D + Sbjct: 64 SFLLGDRYRESFADVLAAHPDVPVFTGPDDVLEALTGFHLHRGALAAMDRPAPRPLADVL 123 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++ +++ + + D N+GA++RSAVA D ++ T + + + + G + +P+ Sbjct: 124 AGARRVLIAEDLVDHTNLGAVVRSAVALGWDALLLTPQAADPLYRRAIRVSMGTVFRLPW 183 Query: 190 IRISNLT-------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 R+ A + T +E +++AL+LG EG G+RP Sbjct: 184 ARLPGPVAASLPALRAAGFAVAALEVTERAVGLDSARIEPLRTAERLALVLGQEGPGVRP 243 Query: 243 KTQETATSMAHLHMPGIIKALNV 265 +T + + MP + +LNV Sbjct: 244 ETLAQTDADVVIPMPDGVDSLNV 266 >gi|251798741|ref|YP_003013472.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. JDR-2] gi|247546367|gb|ACT03386.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. JDR-2] Length = 154 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 3/149 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + ++ L ++ Sbjct: 1 MAFHIVLVEPEIPANTGNIARTCAATGAHLHLVRPLGFQTDDRTLKRAGLDYWH--AVHV 58 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 + + + + + S+ + K + D + G E KGL + + + Sbjct: 59 EYHDSFKELQDANPNGRFFYASTRATKVYTEFDFRDGDFFVFGKETKGLPQELIDANLDT 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G +++LN+SN+AA+ +Y Sbjct: 119 CMRMPMTGDVRSLNLSNSAAIIVYEALRQ 147 >gi|167585363|ref|ZP_02377751.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ubonensis Bu] Length = 156 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 44/149 (29%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A + ++ E+ Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + ++ + G+E +GL E Sbjct: 61 PDWDAFVAAETPDPARMFAFTTRGSGRFHDHAFQPGDWFVFGSETRGLPAPLLERFANAQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149 >gi|241764399|ref|ZP_04762424.1| RNA methyltransferase, TrmH family, group 2 [Acidovorax delafieldii 2AN] gi|241366189|gb|EER60760.1| RNA methyltransferase, TrmH family, group 2 [Acidovorax delafieldii 2AN] Length = 168 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R A C + E ++ ++ E+ +R Sbjct: 1 MFHIVLVEPEIPPNTGNVIRLAANTGCTLHLIEPLGFSMEDRLMRRAGLDYHEYAQVLRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 T L++ + L++ + + L+ GAE +GL P+ +ET Sbjct: 61 PGWTAFLRQAQPDPARMFALTTHGTQTAFETCFLPGDWLVFGAETRGLPPELRETFPPAQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 121 RLRLPMVSGQRSLNLSNAVAVTVFEAWRQ 149 >gi|157149223|ref|YP_001456542.1| putative tRNA/rRNA methyltransferase YibK [Citrobacter koseri ATCC BAA-895] gi|157086428|gb|ABV16106.1| hypothetical protein CKO_05063 [Citrobacter koseri ATCC BAA-895] Length = 157 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFAAVQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + A + L++ D L+ G E +GL + A Sbjct: 59 RHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPATILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|325678609|ref|ZP_08158219.1| RNA methyltransferase, TrmH family, group 2 [Ruminococcus albus 8] gi|324109659|gb|EGC03865.1| RNA methyltransferase, TrmH family, group 2 [Ruminococcus albus 8] Length = 190 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 50/160 (31%), Gaps = 2/160 (1%) Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 P R +L +VL P N G I R+ + + L ++ Sbjct: 14 HQPPENSPKRAHRLNIVLVEPRIPQNTGNISRTCAVTGAALHMVRPFGFEIDDKKLKRAG 73 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 + + NL D K + ++ + ++ G E GL Sbjct: 74 LDYWDKLDIYYYDNLEDFFAKNEGEFYFFT-TKGRKVHSDAAYPEDKPVYIVFGREDAGL 132 Query: 241 RPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M +++LN+SN+ A+A Y Sbjct: 133 PEELLYAHPEECVRIPMRNTLRSLNLSNSVAIATYEVLRQ 172 >gi|257458795|ref|ZP_05623918.1| RNA methyltransferase, TrmH family [Campylobacter gracilis RM3268] gi|257443783|gb|EEV18903.1| RNA methyltransferase, TrmH family [Campylobacter gracilis RM3268] Length = 162 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 7/151 (4%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL + N G+I R V C + + L ++ + Sbjct: 1 MFNIVLVYPQIHTNTGSIGRMCVNAGCPLHLIKPLGFVIDDKHLRRAGLDYWASLDLKIW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT----QETA 248 + + + + + ++ + K + LI G+EG GL + +E Sbjct: 61 ESWDEFMAANGKFKQRFFFATTKTNKLYYEAKFQPGDFLIFGSEGHGLPLEIMRTNRENC 120 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G ++LN++ + + Y Sbjct: 121 ---ITIPMSGAGRSLNLATSVGIVTYEAIRQ 148 >gi|78223582|ref|YP_385329.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter metallireducens GS-15] gi|78194837|gb|ABB32604.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter metallireducens GS-15] Length = 158 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 A + + I S + K + + ++ G E GL + Sbjct: 56 YWSEVEIHYWDDLAALQHAYPEGRFIYTSKKAAKTHIEAAFKEGDFIVFGKETVGLPEEL 115 Query: 245 QETA-TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E + + + G +++LN+S +A + LY Sbjct: 116 IEANRENTVRIPIFGKVRSLNLSTSAGIVLYEALRQ 151 >gi|228475926|ref|ZP_04060636.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis SK119] gi|228270081|gb|EEK11551.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis SK119] Length = 156 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 1/151 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ +L ++ EH+ Sbjct: 1 MTNHIVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 N+ + + + + + + I G E GL +E A + Sbjct: 61 HENIESFFEVTNGKYYLLTKFGKQTYSDFDFSNTEIENYFIFGRETTGLPDWVKEKYADT 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M I++LN+SN AA+ +Y Sbjct: 121 ALRIPMSDHIRSLNLSNTAALLIYEALRQQN 151 >gi|167755443|ref|ZP_02427570.1| hypothetical protein CLORAM_00957 [Clostridium ramosum DSM 1402] gi|237733671|ref|ZP_04564152.1| RNA methyltransferase [Mollicutes bacterium D7] gi|167704382|gb|EDS18961.1| hypothetical protein CLORAM_00957 [Clostridium ramosum DSM 1402] gi|229383269|gb|EEO33360.1| RNA methyltransferase [Coprobacillus sp. D7] Length = 169 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G I+R+ VA + I + + ++ ++ + Sbjct: 1 MNHIVLVHPAIPQNTGNIMRTCVATNTSLHIIKPMSFELDDKKMKRAGLDYVKDLNLYVY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 N + QK S + + L G E G+ + + Sbjct: 61 ENYEEFEQKNPGEYHFFTRYSHLCYTDQDFSDDKKEHYLFFGHEHDGIPKEILTKHLDRC 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 121 LRIPMSDKVRSLNLSNCAAICIYEVLRQ 148 >gi|54298499|ref|YP_124868.1| hypothetical protein lpp2563 [Legionella pneumophila str. Paris] gi|53752284|emb|CAH13716.1| hypothetical protein lpp2563 [Legionella pneumophila str. Paris] Length = 149 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 42/147 (28%), Gaps = 3/147 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + L P N G I+R + E + ++ H + Sbjct: 1 MIHIALYQPEIPPNTGNIIRLCANTGAQLHLIHPLGFTLEDKQMRRAGLDY--HQWASIL 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + S+ K L+ G E GL + S Sbjct: 59 HYENWQTFLQSHSQRRLFCCSAKGKVKYSDVDYKADDILLFGPESCGLPQQILNQ-YSTI 117 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ LY Sbjct: 118 RIPMRENNRSLNLSNAVAIILYEAWRQ 144 >gi|242374104|ref|ZP_04819678.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis M23864:W1] gi|242348229|gb|EES39831.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis M23864:W1] Length = 156 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 1/149 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + ++ +L ++ EH+ Sbjct: 1 MTNHIVLFQPEIPANTGNIARTCAGTLTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 ++ + + + ++ I G E GL +E A + Sbjct: 61 HESIEAFFESTEGNYYLLTKFGKQTYSDFNFSNTEEEHYFIFGRETTGLPNWVKEKYADT 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN AA+ +Y Sbjct: 121 ALRIPMSDKIRSLNLSNTAALLIYEALRQ 149 >gi|266619523|ref|ZP_06112458.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM 13479] gi|288868934|gb|EFD01233.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM 13479] Length = 164 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + G + ++ K L+ G E G+ + Sbjct: 50 YWDKLDVTVYCDYQDFLERNPGAKIYMATTKGLKVYSDVEYEPDCFLMFGKESAGIPEEI 109 Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E + M G I++LN+SN+ ++ LY Sbjct: 110 LLENQEQCVRIPMWGDIRSLNLSNSVSIVLYEALRQ 145 >gi|258514114|ref|YP_003190336.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum acetoxidans DSM 771] gi|257777819|gb|ACV61713.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum acetoxidans DSM 771] Length = 168 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + K +S+ + + L+ G E +GL Sbjct: 50 YWYLVEIYYHDSFEALKEKYPLGTFYYVSTKAARHYCDVEYGPGDFLVFGKETRGLPESL 109 Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + M ++LN++N+ A+ LY Sbjct: 110 LQANSGNCVRIPMVSDARSLNLANSVAIVLYEALRQ 145 >gi|261341783|ref|ZP_05969641.1| hypothetical protein ENTCAN_08264 [Enterobacter cancerogenus ATCC 35316] gi|288316153|gb|EFC55091.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter cancerogenus ATCC 35316] Length = 159 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H + Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVV 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + A + L++ D L+ G E +GL + A Sbjct: 59 RHPDYAAFLDAEKPQRMFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPATILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|77359337|ref|YP_338912.1| tRNA/rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125] gi|76874248|emb|CAI85469.1| putative tRNA/rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125] Length = 154 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + + ++ H Sbjct: 1 MLDIVLYQPEIPPNTGNIIRLCANTGYSLHLIEPLGFAWDDKRIKRAGLDY--HEFSHVQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + ++ + Q L+ G E +GL + ++ Sbjct: 59 RHASFEAYLEACKPKKIYACTTKGSQFHHQAQYEAGDCLVFGPETRGLPDELIQSLPNEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y + Sbjct: 119 RVRIPMQANSRSMNLSNAVSVFVYESWRQL 148 >gi|289550428|ref|YP_003471332.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus lugdunensis HKU09-01] gi|315657919|ref|ZP_07910793.1| RNA methyltransferase [Staphylococcus lugdunensis M23590] gi|289179960|gb|ADC87205.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus lugdunensis HKU09-01] gi|315496955|gb|EFU85276.1| RNA methyltransferase [Staphylococcus lugdunensis M23590] Length = 156 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 1/149 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + ++ +L ++ + + Sbjct: 1 MTNHIVLYQPEIPANTGNIARTCAGTDTHLHLIKPLGFSTDDKMLKRAGLDYWKFVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 ++ + F + + ++D + I G E GL +E A + Sbjct: 61 HESIESFFETTSGKYFLLTKFGKKTYSDFDFSDRDDDLYFIFGRETTGLPQWVKEKYADT 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN AA+ +Y Sbjct: 121 ALRIPMNSNIRSLNLSNTAALLIYEALRQ 149 >gi|66767332|ref|YP_242094.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|66572664|gb|AAY48074.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] Length = 300 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 97/229 (42%), Gaps = 8/229 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 LYG++ + A + + ++ T+ + + + + V + K+ Sbjct: 61 LYGINAIQAVFKARPQALRKIYLTEARIPQFKALLAWCVAQRLGYRVVEEADLTKLAS-S 119 Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 H+G+ E + L + L + LD V +PHN GAILRS+ F G++ Sbjct: 120 THHEGIVAEVLRVPPQPLQDWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLL 179 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + S A+ A G E +P +++ + A+ ++ GF D + + Sbjct: 180 LPAGSTLGLSGTAARVAEGGAEAVPLVQLPDNAQAMAQLRQAGFAVAATLVDGGQDVFAT 239 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 ++ ++GAE +G+ + +H G++++LNV++A AV Sbjct: 240 ALPQRLVYVMGAESEGMDRQFASACDLQLSIHGSGLVESLNVASATAVF 288 >gi|54295332|ref|YP_127747.1| hypothetical protein lpl2417 [Legionella pneumophila str. Lens] gi|53755164|emb|CAH16657.1| hypothetical protein lpl2417 [Legionella pneumophila str. Lens] Length = 149 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 42/147 (28%), Gaps = 3/147 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + L P N G I+R + E + ++ H + Sbjct: 1 MIHIALYQPEIPPNTGNIIRLCANTGAQLHLIHPLGFTLEDKQMRRAGLDY--HQWASIL 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + S+ K L+ G E GL + S Sbjct: 59 HYENWQTFLQSHSQRRLYCCSAKGKVKYSDVDYKADDILLFGPESCGLPQQILNQ-YSTI 117 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ LY Sbjct: 118 RIPMRENNRSLNLSNAVAIILYEAWRQ 144 >gi|315186581|gb|EFU20340.1| RNA methyltransferase, TrmH family, group 2 [Spirochaeta thermophila DSM 6578] Length = 154 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 3/148 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R+ A + E L ++ + Sbjct: 1 MSIHVVLHEPEIPQNTGNIARTCAATGAVLHLIEPLGFSLEDRYLRRAGLDYWPMVDLRL 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250 S+ L++ + D+ L+ G E GL P+ E Sbjct: 61 HSSWDAFLEEERPSSLFLLSTRGTRSYHTCS--FPDETYLVFGKETAGLPPRILEAFPDR 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278 + + M ++LN+SNA A+ +Y Sbjct: 119 VVRIPMRAGARSLNLSNAVAILVYEALR 146 >gi|212633117|ref|YP_002309642.1| RNA methyltransferase TrmH, group 2 [Shewanella piezotolerans WP3] gi|212554601|gb|ACJ27055.1| RNA methyltransferase TrmH, group 2 [Shewanella piezotolerans WP3] Length = 193 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 46/163 (28%), Gaps = 4/163 (2%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L + S + L N G I+R C + E L ++ Sbjct: 28 CSRPQPLHFRQASMFHIALYEPEIAPNTGNIIRLIANNGCQLHLIEPLGFDLEDKKLRRA 87 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 + N L+ M +P + L+ G E +G Sbjct: 88 GLDYADLANVSHHKNFESFLKAMQGKRIMACTTKG--SRPHSELTFQQDDVLLFGPESRG 145 Query: 240 LRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L ++ + M ++LN+SNA A+ Y Sbjct: 146 LPADIIDSIPTEQRLRIPMMSTSRSLNLSNAVAIISYEAWRQL 188 >gi|52842704|ref|YP_096503.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629815|gb|AAU28556.1| RNA methyltransferase TrmH family, group 2 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 174 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 43/150 (28%), Gaps = 3/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 N + + L P N G I+R + E + ++ H Sbjct: 23 ENHMIHIALYQPEIPPNTGNIIRLCANTGAQLHLIHPLGFTLEDKQMRRAGLDY--HQWA 80 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + S+ K L+ G E GL + Sbjct: 81 SILHYENWQTFLQSHSQRRLFCCSAKGKVKYSDVDYKADDILLFGPESCGLPQQILNQ-Y 139 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 S + M ++LN+SNA A+ LY Sbjct: 140 STIRIPMRENNRSLNLSNAVAIILYEAWRQ 169 >gi|239832429|ref|ZP_04680758.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG 3301] gi|239824696|gb|EEQ96264.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG 3301] Length = 154 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 50/150 (33%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +L + L + P N G ILR A + L ++ LE R Sbjct: 1 MELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDVSDRSLKRAGMDYLEQAALTR 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++ G + + LS+ + P + L+ G E G+ + A + Sbjct: 61 HADWRHFEDWRRQAGRRIVLLSTRAAVPYTDYQFQENDILLFGRESSGVPDTVHDAADAR 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M ++LN++ + A+ Sbjct: 121 LLIPMMPGARSLNLAISVAMTAGEALRQRK 150 >gi|33322913|gb|AAQ07193.1|AF496501_1 trmh family RNA methyltransferase [Lactobacillus delbrueckii subsp. lactis] Length = 115 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 26/48 (54%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +ALI+G E G+ P+ A ++ + G ++LN + AA + +Y Sbjct: 67 VALIIGNEAHGVSPEIAALADEKLYIPIKGRAESLNAAVAAGIMIYHF 114 >gi|308188629|ref|YP_003932760.1| hypothetical protein Pvag_3169 [Pantoea vagans C9-1] gi|308059139|gb|ADO11311.1| hypothetical protein Pvag_3169 [Pantoea vagans C9-1] Length = 157 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFAWDDKRLRRAGLDY--HEFTAIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + L++ L+ G E +GL + A Sbjct: 59 FHADYQAFIAAESPERLFALTTKGTPAHSAVAYQAGDYLLFGPESRGLPAEILAALPAQQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMRAESRSMNLSNAVSVVVYEAWRQL 148 >gi|154493345|ref|ZP_02032665.1| hypothetical protein PARMER_02682 [Parabacteroides merdae ATCC 43184] gi|154086555|gb|EDN85600.1| hypothetical protein PARMER_02682 [Parabacteroides merdae ATCC 43184] Length = 176 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 3/159 (1%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + L++VLDHV +N+G++ R++ AF + I + A + K+A GA E Sbjct: 17 FKDSKKIPLVVVLDHVRSLNNVGSVFRTSDAFRVESIYLCGITACPPHAEIHKTALGAEE 76 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRP 242 + + + +A+ K+ G+ + + KN K A+I+G E KG++ Sbjct: 77 TVDWEYFEDTMEAVDKLKQQGYTVCAVEQAEGSTMLDNLLLDKNKKYAVIMGNEVKGVQQ 136 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + G +LNVS + ++ + Sbjct: 137 CVVDNCDMCIEIPQYGTKHSLNVSVTTGIIIWDFFKQLS 175 >gi|88803205|ref|ZP_01118731.1| spoU protein [Polaribacter irgensii 23-P] gi|88780771|gb|EAR11950.1| spoU protein [Polaribacter irgensii 23-P] Length = 225 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 3/151 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL---E 185 R +VL+ + PHN A++R+ F + + ++ + S Sbjct: 28 NRTRHFTVVLEDIFQPHNASAVVRTCDIFGIQDVHAIENKYNTKVSRHVAKGSQKWLNQY 87 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + ++ L+ K A + G E +G+ Sbjct: 88 RYRSDGDNTKECLDGLKEKGYQIIATSPHNNSCVLQDFDFTKKTAFVFGVEAEGVSDCVI 147 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 E A + M G ++LN+S AAA+ L Sbjct: 148 ENADGFLKIPMVGFTESLNISVAAAIILQEV 178 >gi|330997272|ref|ZP_08321125.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT 11841] gi|329571067|gb|EGG52774.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT 11841] Length = 180 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 71/157 (45%), Gaps = 3/157 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++VLDHV +N+G++ RS+ AF + + + + K+A GA Sbjct: 20 EFKTAEKLPLIVVLDHVRSLYNVGSVFRSSDAFRVESVYLCGITATPPQVEIHKTALGAE 79 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLR 241 + + ++ DA++ + + G++ + + Q+ + DK A+ILG E KG++ Sbjct: 80 DSVDWVYYERTQDAVEHLKAEGYEVWAVEQVEGSVMLQDFRPDKAKKYAIILGNEVKGVQ 139 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + + G +LNVS A + ++ Sbjct: 140 QEVVDQCDGCIEIPQFGTKHSLNVSVTAGILVWEFAR 176 >gi|256061599|ref|ZP_05451740.1| tRNA/rRNA methyltransferase SpoU [Brucella neotomae 5K33] Length = 159 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 1/152 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +L + L + P N G ILR + L ++ LE R Sbjct: 1 MELRVALYQPDIPGNTGTILRMVACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTR 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + G + + LS+ + P + L+ G E G+ + A Sbjct: 61 HPDWNCFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADER 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282 + M ++LN++ + A+ +K Sbjct: 121 LLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 152 >gi|156095332|ref|XP_001613701.1| RNA methyltransferase [Plasmodium vivax SaI-1] gi|148802575|gb|EDL43974.1| RNA methyltransferase, putative [Plasmodium vivax] Length = 313 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 46/270 (17%), Positives = 90/270 (33%), Gaps = 16/270 (5%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA--LNNPSRKIFQLLAT 74 D+ Y ++ + + K + +K + + F V + + N +R Sbjct: 48 DNEYLRISKRSKMMKYIIRLRKKRNFRKKMNSFF------VKESSTIANLARNNNLTFEV 101 Query: 75 KNALARLDWDANLPHPFPVKTVPPQTIDKI---VGKEAVHQGLALETAPLLSPTLDAVRN 131 + +R D + T++ I K L + A Sbjct: 102 ILSNSRSLLDHFKSKCSKLYYADSDTLNYIFRDSLKVNKGAKNDAVAVVKLPEPIPAKEP 161 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + L+ D + +N+G IL +A + D + + + + +G+ I Y Sbjct: 162 IRFLLAFDRIRYAYNLGKILNTAYSLGVDCLFYLHNTVDPFNHKVIEMTNGSHLQISYQF 221 Query: 192 ISN----LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 S K+ T G++ + E + + LILG E G Sbjct: 222 GSYVELRQFCEAHKLLPIVAHTNGVNPGHILKVTSEQEKKGVCLILGNESTGPHADVLSF 281 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A L M + +LNVS AA++ ++ + Sbjct: 282 A-KPISLPMHEMTNSLNVSVAASILIHYLK 310 >gi|148360047|ref|YP_001251254.1| TrmH family transporter RNA methyltransferase [Legionella pneumophila str. Corby] gi|148281820|gb|ABQ55908.1| RNA methyltransferase TrmH family, group 2 [Legionella pneumophila str. Corby] Length = 155 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 3/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 N + + L P N G I+R + E + ++ H Sbjct: 4 ENHMIHIALYQPEIPPNTGNIIRLCANSGAQLHLIHPLGFTLEDKQMRRAGLDY--HQWA 61 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + S+ K L+ G E GL + Sbjct: 62 SILHYESWQTFLQSHSQRRLFCCSAKGKVKYSDVDYKADDILLFGPESCGLPQQILNQ-Y 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 S + M ++LN+SNA A+ LY Sbjct: 121 STIRIPMRENNRSLNLSNAVAIILYEAWRQ 150 >gi|242080019|ref|XP_002444778.1| hypothetical protein SORBIDRAFT_07g027830 [Sorghum bicolor] gi|241941128|gb|EES14273.1| hypothetical protein SORBIDRAFT_07g027830 [Sorghum bicolor] Length = 257 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 46/160 (28%), Gaps = 9/160 (5%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 L +VL P N G+I R+ A + + + L ++ ++ Sbjct: 73 RRMLHVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGYKVDDTKLKRAGLDYWPYVVVK 132 Query: 191 RISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + + L+ G+E KGL + E Sbjct: 133 IHDSWDHFFDYFMKQEGDKRLLAFTKRGTQIHSDFSYRPGDWLVFGSETKGLPQQALEDC 192 Query: 249 TS------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 + M ++ LN+S + +ALY Sbjct: 193 CREGLGGGTLRIPMVETYVRCLNLSVSVGIALYEAARQLN 232 >gi|116620879|ref|YP_823035.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus Ellin6076] gi|116224041|gb|ABJ82750.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus Ellin6076] Length = 180 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 61/144 (42%), Gaps = 1/144 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V +N+G+ R+A A S + + + + + + K+A GA + + Sbjct: 25 VLLDNVRSMYNVGSFFRTADAASVEKLYLSGITAQPPKSAITKTALGAENTVCWEHAWEA 84 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHL 254 ++K + G++ + + + + +I G E G+RP + + Sbjct: 85 RPLVEKARAQGYEIAAVETSVHAVDLFDWTPRFPVLVIFGHEVDGIRPAISALCDTHVRI 144 Query: 255 HMPGIIKALNVSNAAAVALYITQN 278 M G +LNV+ A V +Y Sbjct: 145 PMLGAKHSLNVATAGGVVIYELLR 168 >gi|226951582|ref|ZP_03822046.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] gi|294651241|ref|ZP_06728569.1| RNA methyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|226837685|gb|EEH70068.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] gi|292822894|gb|EFF81769.1| RNA methyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 156 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 3/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I+R + + L ++ E Sbjct: 1 MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60 Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--T 249 N+ L + + G + + ++ N +AL++G E +GL + + Sbjct: 61 DNIELCLADLKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEQVRLMFPQD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV +Y Sbjct: 121 QWIRLPMAENSRSLNLSNATAVIVYEAWRQ 150 >gi|193212910|ref|YP_001998863.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327] gi|193086387|gb|ACF11663.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327] Length = 178 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 2/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + ++L ++ N+G++ R+A A D I+ T + + K+A GA +P+ Sbjct: 24 ERHPVTLMLHNIRSMWNVGSMFRTADAAGIDEIVITGYTATPPRKEIDKTALGAQLTVPW 83 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQET 247 ++ +AL + G + GL ++ D + L++G E G+ + Sbjct: 84 RHFADPLEALSVLKGEGCKVFGLEIAENSRSYSSLQPDDYPLVLLVGNEVDGIGDELLAR 143 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + G +LNVS AA VAL+ Sbjct: 144 CDGVLEIPQYGTKHSLNVSVAAGVALFECVR 174 >gi|260770823|ref|ZP_05879752.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio furnissii CIP 102972] gi|260614060|gb|EEX39250.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio furnissii CIP 102972] gi|315178864|gb|ADT85778.1| Predicted rRNA methylase [Vibrio furnissii NCTC 11218] Length = 157 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 44/147 (29%), Gaps = 3/147 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L N G I+R + + E + ++ + R + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMA 252 + + + G I + L+ G E +GL E+ Sbjct: 64 QAFIAFLEARGDYRIFACTTKTTGHHVDAQFQRGDVLLFGPETRGLPADLIESLPMAQRI 123 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 RIPMMPEARSLNLSNAVAIIAFEAWRQ 150 >gi|317050081|ref|YP_004117729.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b] gi|316951698|gb|ADU71173.1| RNA methyltransferase, TrmH family, group 2 [Pantoea sp. At-9b] Length = 157 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 43/150 (28%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIHPLGFGWDDKRLRRAGLDY--HEFTAIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + A + L++ L+ G E +GL Sbjct: 59 HHDNYAAFVAAEAPQRLFALTTKGTPAHSAVRYQAGDYLVFGPESRGLPADILNALPPEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMPESRSMNLSNAVSVVVYEAWRQL 148 >gi|254293112|ref|YP_003059135.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814] gi|254041643|gb|ACT58438.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814] Length = 152 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + + P N+G+ R A FS I P + L +SA + + + Sbjct: 3 IAFYQPDIPQNLGSNFRIAACFSTKVDIIGPCGFPLTAKALRRSAMDYGPMVDVEQHDSW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 T + + ++ PL + L+ G E G+ + ++A + Sbjct: 63 TSFKNSPDRKKGRLVLFTTKGATPLLETKFESGDTLLFGRESAGVPDEVHDSAQIRCVIP 122 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 + ++LNVS +AA+AL+ Sbjct: 123 LNPEARSLNVSVSAAIALHEALRQ 146 >gi|146309796|ref|YP_001174870.1| putative tRNA/rRNA methyltransferase YibK [Enterobacter sp. 638] gi|145316672|gb|ABP58819.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter sp. 638] Length = 157 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H + Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFTAVV 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + A + L++ + L+ G E +GL + A Sbjct: 59 RHHDYAAFVAAENPQRMFALTTKGTPAHSAVSYQEGDYLMFGPETRGLPATILDVLPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|238760433|ref|ZP_04621571.1| Methyltransferase [Yersinia aldovae ATCC 35236] gi|238701328|gb|EEP93907.1| Methyltransferase [Yersinia aldovae ATCC 35236] Length = 162 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 46/153 (30%), Gaps = 5/153 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R C + + L ++ E Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHH 60 Query: 193 SNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-- 247 + L Q L + L+ G E +GL P + Sbjct: 61 HDYHAFLDSEKLDSAQPARLFALTTKGTPAHSAVSYQVNDYLLFGPETRGLPPTVLDALP 120 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M +++N+SNA +V +Y Sbjct: 121 AQQKIRIPMLAASRSMNLSNAVSVVVYEAWRQL 153 >gi|21232594|ref|NP_638511.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188990408|ref|YP_001902418.1| 23S rRNA methyltransferase [Xanthomonas campestris pv. campestris str. B100] gi|21114393|gb|AAM42435.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167732168|emb|CAP50360.1| 23S rRNA methyltransferase [Xanthomonas campestris pv. campestris] Length = 300 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 97/229 (42%), Gaps = 8/229 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 LYG++ + A + + ++ T+ + + + + V + K+ Sbjct: 61 LYGINAIQAVFKARPQALRKIYLTEARIPQFKALLAWCVAQRLGYRVVEEADLTKLAS-S 119 Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 H+G+ E + L + L + LD V +PHN GAILRS+ F G++ Sbjct: 120 THHEGIVAEVLRVPPQPLQDWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLL 179 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + S A+ A G E +P +++ + A+ ++ GF D + + Sbjct: 180 LPAGSTLGLSGAAARVAEGGAEAVPLVQLPDNAQAMAQLRQAGFAVAATLVDGGQDVFAT 239 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 ++ ++GAE +G+ + +H G++++LNV++A AV Sbjct: 240 ALPQRLVYVMGAESEGMDRQFASACDLQLSIHGSGLVESLNVASATAVF 288 >gi|145230059|ref|XP_001389338.1| RNA methyltransferase, TrmH family [Aspergillus niger CBS 513.88] gi|134055453|emb|CAK43968.1| unnamed protein product [Aspergillus niger] Length = 497 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 56/315 (17%), Positives = 108/315 (34%), Gaps = 71/315 (22%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 + K + +T+ +YG+ AAL R+I++L ++ L + Sbjct: 165 EVKSLVRPPSSVPYTTPASQF-VYGISACMAALRCSRRRIYKLYIYQSEGRELSPEKKAL 223 Query: 89 HP--------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----------- 129 + + + HQG LE +PL + Sbjct: 224 RKLALLKNVTVKMAFASWGRLLDQMSDGRPHQGCILEVSPLPRLPVQNFRPVPSPEADNF 283 Query: 130 ----------------------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 + ++++LD + DP N+GAI+RSA D Sbjct: 284 GLELGAQSREEAQVNTTNNTVDINNTFGKRYPVVILLDGIVDPGNLGAIIRSAYYLGADA 343 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI----------- 210 I+ R S S V+ K+++GA E + + + N D +++ G++ Sbjct: 344 IVFAGRNSAEISPVVLKASAGAAELMTLLHVRNEVDFIRRSKDNGWRFYAADAPGKGSTS 403 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG------------ 258 ++ + +++G+EG GL P A ++ + Sbjct: 404 TYIDPAEFGNGAPVAQAPSVIMMGSEGTGLSPHILSQADAVIGIPGAKFSPELGAESDPA 463 Query: 259 IIKALNVSNAAAVAL 273 + +LNVS AAA+ + Sbjct: 464 RVDSLNVSVAAALLM 478 >gi|83719588|ref|YP_440980.1| RNA methyltransferase [Burkholderia thailandensis E264] gi|167617773|ref|ZP_02386404.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia thailandensis Bt4] gi|257140366|ref|ZP_05588628.1| RNA methyltransferase [Burkholderia thailandensis E264] gi|83653413|gb|ABC37476.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia thailandensis E264] Length = 156 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A + ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMHVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + +T ++ + G+E +GL P E Sbjct: 61 RDWDAFVAAEAPDPARTFAFTTRGSGRFHDRAFEPGDWFVFGSETRGLTPALVERFAPEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149 >gi|328947262|ref|YP_004364599.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM 2489] gi|328447586|gb|AEB13302.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM 2489] Length = 255 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 86/245 (35%), Gaps = 17/245 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA------LARLDWDANLPHPFPVKTVPPQTIDKI 104 + G V S+KI +L + L + + P+ +V + + Sbjct: 11 VCGFAAVKTLEKINSQKIRRLYFMEEKAPLFGGLCKKMAASKRPYNKVADSVELEKLCGS 70 Query: 105 VGKEAVHQGLALETAPLLSPTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 V + V + L+ + V + ++LD V + +N+GAI+RSA F I Sbjct: 71 VHHQGVVAMIDTPVILPLNTEITARWVEQKEDAVILDRVGNANNLGAIVRSAAFFGIKNI 130 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS---SDSKKP 219 + S S + + I L K G S Sbjct: 131 VIPLDESQSSITTSSYRVAEGGMEFVNIYSVRSIPFLLKDMKGKMARFGTSLKAQKKVSE 190 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAVAL 273 ++ + ++LG E KG+ + + S+ + G + +LNV+ AA+V + Sbjct: 191 MKLLCQEKPALVVLGNEEKGISEEVAQNCDSLVIIPFAGMGEAGPKVDSLNVAQAASVIM 250 Query: 274 YITQN 278 Y + Sbjct: 251 YELKK 255 >gi|269798386|ref|YP_003312286.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula DSM 2008] gi|282850623|ref|ZP_06260002.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula ATCC 17745] gi|294794116|ref|ZP_06759253.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. 3_1_44] gi|269095015|gb|ACZ25006.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula DSM 2008] gi|282580116|gb|EFB85520.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula ATCC 17745] gi|294455686|gb|EFG24058.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. 3_1_44] Length = 161 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R A + + + ++ + N+ Sbjct: 3 IVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHENI 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254 + +K + + L+ G E +GL + + + Sbjct: 63 QELYEKYPDRRYFYATTKAKHTHSE--VKYEIGDMLVFGPETRGLPESLLDGKEDTCIRI 120 Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280 M ++LN+SNA A+ Y Sbjct: 121 PMVDEARSLNLSNAVAIIAYEGMRQL 146 >gi|315127782|ref|YP_004069785.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913] gi|315016296|gb|ADT69634.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913] Length = 154 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + + ++ H Sbjct: 1 MLDIVLYQPEIPPNTGNIIRLCANTGYSLHLIEPLGFEWDDKRVKRAGLDY--HEFSHVQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + ++ + Q L+ G E +GL + Sbjct: 59 RHASFDAYLEKCQPKKVYACTTKGSQFHHQAQYEAGDCLVFGPETRGLPDDMIQALPNEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA AV +Y + Sbjct: 119 RVRIPMQADSRSMNLSNAVAVFVYESWRQL 148 >gi|307701543|ref|ZP_07638560.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris FB024-16] gi|307613222|gb|EFN92474.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris FB024-16] Length = 354 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 27/50 (54%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + ++ G+EG+G+ ++T + + + +++LN + A +ALY Sbjct: 302 PLVVVTGSEGRGISRLVRDTCDQIVSIPIAPRMESLNAAVATGIALYQIA 351 Score = 41.7 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 14/132 (10%) Query: 7 KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66 ++I + K + + +R+ K + ++ ++G + VS A Sbjct: 31 AYRDRIAAEKKATHTNAQRSRAAAKDHYRPHTRA------GAELIFGRNPVSEAAVAG-V 83 Query: 67 KIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 +L K+ + P++ +D++ + VHQG+A E Sbjct: 84 PFKRLFVASTIMKDPKLAKVVERASASGVPLRECSAADLDRLT-EGGVHQGIAAELCAYQ 142 Query: 123 SPTLDAVRNSQL 134 LD + L Sbjct: 143 Y--LDVMELWDL 152 >gi|302872532|ref|YP_003841168.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor obsidiansis OB47] gi|302575391|gb|ADL43182.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor obsidiansis OB47] Length = 154 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 3/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P+N G I R+ + E L ++ +++ Sbjct: 1 MPINIVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKI 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250 +L D +K K+ Q D L+ G E GL E Sbjct: 61 YRDLNDFFEKNRGANIFYFSTKG--KQYYTQAPYEDNCYLMFGKETAGLPKWLIEQNIHR 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++LN+SN+ A+ LY Sbjct: 119 TYRIPMISDVRSLNLSNSVAIVLYEVLRQL 148 >gi|82702256|ref|YP_411822.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC 25196] gi|82410321|gb|ABB74430.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC 25196] Length = 153 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 2/146 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++L P N G I+R + E +L ++ E ++ Sbjct: 4 VILYQPEIPPNTGNIIRLCANTGIRLHLVKPLGFTLEDKLLLRAGLDYHEFASITVHADW 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253 + + ++ + +S+ K+ + + A + G E +GL E Sbjct: 64 VECMDELGDRDRRFFAISTKGKQRYDLVTYSPGDAFLFGPESRGLPTDLLENFPEQHRLR 123 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA AV +Y Sbjct: 124 VPMAAGSRSLNLSNAVAVIVYEAWRQ 149 >gi|309776934|ref|ZP_07671904.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 3_1_53] gi|308915345|gb|EFP61115.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 3_1_53] Length = 169 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 2/150 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G ++R+ +A + + + L ++ ++ + Y Sbjct: 1 MLHLVLYEPEIPQNTGNMMRTCMATNTRLHLIKPLGFSLDEQHLKRAGMDYVKELDYTVY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQ-ETATS 250 N D + S + + ILG E G+ + Sbjct: 61 ENWEDFTSQHPSDNYYYMTRYGKKAPSQFDFTTCKGDIYFILGKESTGIPKELLSRQLDR 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN AA+ LY Sbjct: 121 CMRLPMVANARSLNLSNCAAIILYEALRQL 150 >gi|254502349|ref|ZP_05114500.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11] gi|222438420|gb|EEE45099.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11] Length = 156 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 48/144 (33%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + P N G +LR S + P + L ++ LE R N Sbjct: 4 IALYQPDIPQNTGTMLRLVACMSVTVHLIEPAGFPLSDSALKRAGMDYLERAALKRHLNF 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + + L++ + L+LG E G + A + + Sbjct: 64 AAFDDWRRTHNRRLVLLTTKTDLAYTDFEFAADDILLLGRESTGAPDAIHQLADARLTIP 123 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 M +++LNV+ + + L Sbjct: 124 MAEGMRSLNVAVSCGMVLGEALRQ 147 >gi|298208939|ref|YP_003717118.1| spoU protein (spoU) [Croceibacter atlanticus HTCC2559] gi|83848866|gb|EAP86735.1| spoU protein (spoU) [Croceibacter atlanticus HTCC2559] Length = 238 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 1/154 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R + + + V HN A++RS F + + + + + I Sbjct: 41 QRTNHFTVATEDVYQLHNTSAVIRSCDVFGVQNVHIIEEQNAKKIDREIAMGAQKWVTIN 100 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + K + L A+ G E GL + A Sbjct: 101 RYHSVQDSIKSLKEKGYQIVATSPH-IESHNLRDFDVTKPSAIFFGTEKDGLSEEVLNQA 159 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 S + M G ++LN+S +AA+ L N + Sbjct: 160 DSYIKIPMVGFTESLNISVSAAIILQHITNELKQ 193 >gi|294792254|ref|ZP_06757402.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. 6_1_27] gi|294457484|gb|EFG25846.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. 6_1_27] Length = 161 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R A + + + ++ + N+ Sbjct: 3 IVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHENI 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254 + +K + + + L+ G E +GL + + + Sbjct: 63 QELYEKYPNRRYFYATTKAKHTHSE--VKYEIGDMLVFGPETRGLPESLLDGKEDTCIRI 120 Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280 M ++LN+SNA A+ Y Sbjct: 121 PMVDEARSLNLSNAVAIIAYEGMRQL 146 >gi|15613586|ref|NP_241889.1| rRNA methylase [Bacillus halodurans C-125] gi|10173638|dbj|BAB04742.1| rRNA methylase [Bacillus halodurans C-125] Length = 157 Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ + + + ++ +L ++ ++ Sbjct: 1 MGLHIVLYQPEIPANTGNIARTCAGTNTELHLIRPLGFSTDDRMLKRAGCDYWPNVNIHY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQE-TAT 249 ++ + F I K L + G E GL E Sbjct: 61 YDSVDELFATFPDGEFYFIETVGSKNYADFDYSDGSKDHLFVFGRETTGLPNDLIEQHLD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +++LN+SN AA+ +Y Sbjct: 121 RCFRIPQTDKVRSLNLSNTAAIVIYEAIRQ 150 >gi|330684735|gb|EGG96430.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus epidermidis VCU121] Length = 156 Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 1/149 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ +L ++ EH+ Sbjct: 1 MTNHIVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250 ++ + + + + + N+ I G E GL + + + Sbjct: 61 HEDIESFFESTNGEYYLLTKFGKQTYSDFDFSDTNNNHYFIFGRETTGLPDWVKDKYQDT 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN AA+ +Y Sbjct: 121 ALRIPMSDKIRSLNLSNTAALLIYEALRQ 149 >gi|309812297|ref|ZP_07706052.1| RNA methyltransferase, TrmH family, group 2 [Dermacoccus sp. Ellin185] gi|308433602|gb|EFP57479.1| RNA methyltransferase, TrmH family, group 2 [Dermacoccus sp. Ellin185] Length = 171 Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 2/97 (2%) Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + + D + + + L++ +++ + D L+ G E GL Sbjct: 50 YHELADVHVHADVDAARAACPGRWLALTARARRRYDAVDYRDDDVLVFGCEATGLPDYLL 109 Query: 246 ET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T A + M ++LN+ NA AV Y Sbjct: 110 ATFSADERLRIPMRPDNRSLNLGNAVAVVAYEAWRQL 146 >gi|306844590|ref|ZP_07477177.1| tRNA/rRNA methyltransferase [Brucella sp. BO1] gi|306275034|gb|EFM56797.1| tRNA/rRNA methyltransferase [Brucella sp. BO1] Length = 228 Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 7/216 (3%) Query: 63 NPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 + + LL +N L L LP PV +VP +D + G VH+G+ Sbjct: 8 SARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRK 66 Query: 122 LSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 P L + L++VL +++ N+G+I R+A AF D ++ + Sbjct: 67 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAI 126 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 + + GA +PY + D + GF + L+ + + + + ++ AL+LG EG Sbjct: 127 RVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEG 186 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +GL + E A + M +LNV+ A+ +AL Sbjct: 187 EGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 221 >gi|301167940|emb|CBW27526.1| tRNA (guanosine-2'-O-)-methyltransferase [Bacteriovorax marinus SJ] Length = 249 Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 62/188 (32%), Gaps = 2/188 (1%) Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 + + D + V L + L+ LD R S L ++L+ + D N+ AI R+ Sbjct: 23 EINDKNFDHHTMRSIVEDSLNDQRKELIERILDQ-RISGLSVILESLGDLGNLQAISRTC 81 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F + + P + + S Sbjct: 82 DNFGVQKLEIIETKGPMKWTNRTSQGAHKWVT-MQKWYETKDCLQYFKDRGVQIVSTAFS 140 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 D P + AL++G E G+ +E + + G ++LNVS AAA+ + Sbjct: 141 DKAIPYTEVDFTKPTALLMGNESFGISEVAREMSDVECIIPSYGYSQSLNVSVAAAIVIE 200 Query: 275 ITQNHFAK 282 + K Sbjct: 201 HATSQIRK 208 >gi|296100529|ref|YP_003610675.1| putative tRNA/rRNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054988|gb|ADF59726.1| putative tRNA/rRNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 157 Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H + Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFTAVV 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + A + L++ L+ G E +GL + A Sbjct: 59 RHHDYAAFLESEKPERMFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPATILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|288555214|ref|YP_003427149.1| rRNA methylase [Bacillus pseudofirmus OF4] gi|288546374|gb|ADC50257.1| rRNA methylase [Bacillus pseudofirmus OF4] Length = 157 Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ + + ++ +L ++ + Sbjct: 1 MGLHIVLYQPEIPANTGNIARTCAGTNTSLHLIRPLGFSTDDKMLKRAGCDYWPSVDIHY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQET-AT 249 +L + F I ++K + G E G+ + Sbjct: 61 YDSLEELFDTYKEGEFYFIETVGTKNFSEFDYSDDNKDHFFVFGRETTGIPQDIIDRNLD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +++LNVSN AA+ +Y Sbjct: 121 RCFRIPQTDKVRSLNVSNTAAIVIYEAIRQ 150 >gi|167568630|ref|ZP_02361504.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia oklahomensis C6786] Length = 156 Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A + ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + ++ + GAE +GL P+ E Sbjct: 61 RDWDAFIAAEAPDPAHMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPELVERFPPEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149 >gi|332188848|ref|ZP_08390556.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17] gi|332011114|gb|EGI53211.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17] Length = 151 Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 47/139 (33%) Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + +P G + +C GI A A++++ + D Sbjct: 5 LYEPDIAGNVGTLIRTAACFGIAVDLIEPMGFPYSDRALARSAMDYVDRAEVVRHADWTA 64 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + + ++ PL ++LG+EG G+ + A + M + Sbjct: 65 FQAAARGRIVLATTLGALPLPDMRFRPDDVILLGSEGAGVPSAVHDAADIRVRVPMRAGV 124 Query: 261 KALNVSNAAAVALYITQNH 279 ++LNV+ + + + Sbjct: 125 RSLNVAITGGILMAEARRQ 143 >gi|319951639|ref|YP_004162906.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM 14237] gi|319420299|gb|ADV47408.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM 14237] Length = 235 Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 1/144 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R +++ + ++ V HN A++RS F +R + S + Sbjct: 48 RTNKITVAVEDVFQMHNTSAVVRSCDIFGIQEAHLIERKYGDQLDSQIAMGSQ-KWVDIH 106 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S + + LE KIAL G E GL + + A Sbjct: 107 RYESTKNCMDTLKQNGYKIIATTPHNDSCLLEDFEIEGKIALFFGTERNGLSEEVLKNAD 166 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + M G ++LN+S +AA+ L Sbjct: 167 GFLKIPMVGFTESLNISVSAAIIL 190 >gi|94501460|ref|ZP_01307979.1| putative RNA-methyltransferase [Oceanobacter sp. RED65] gi|94426425|gb|EAT11414.1| putative RNA-methyltransferase [Oceanobacter sp. RED65] Length = 154 Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 41/149 (27%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R C + E L ++ H Sbjct: 1 MFHIALFEPQIAPNTGNIIRLCANNGCQLHLIEPMGFNLEEKKLRRAGLDY--HEFANVS 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250 K + ++ + L+ GAE GL + E+ Sbjct: 59 VYPDYWAFKEAMKDKRIFACTTKGSGHYHKVKYQPDDVLLFGAETHGLSDEVMESIDPSM 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN+ A+ Sbjct: 119 RIRIPMLPDSRSLNLSNSVAIISLEAWRQ 147 >gi|110835132|ref|YP_693991.1| RNA methyltransferase [Alcanivorax borkumensis SK2] gi|110648243|emb|CAL17719.1| RNA methyltransferase, TrmH family [Alcanivorax borkumensis SK2] Length = 156 Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYIT 276 P Q D L+ G E +GL + ++ AT L M ++LN+SNA AV LY Sbjct: 85 PHSQACFQDGDVLLFGPETRGLPEQILDSLPATQRLRLPMVAESRSLNLSNAVAVTLYEA 144 Query: 277 QNHF 280 Sbjct: 145 WRQL 148 >gi|26991728|ref|NP_747153.1| RNA methyltransferase [Pseudomonas putida KT2440] gi|24986832|gb|AAN70617.1|AE016704_8 RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida KT2440] Length = 157 Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 4/153 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + ++L P N G I+R C + + L ++ E+ Sbjct: 1 MEPCMFHVILFQPEIPPNTGNIIRLCANSGCALHLIEPISFELDDKRLRRAGLDYHEYAT 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET- 247 R +L L+ + ++ P + A + G E +GL + ++ Sbjct: 61 LKRHESLAGCLES--LGNPRLFAFTTKGSHPFHEVAFQPGDAFLFGPESRGLPAEVLDSL 118 Query: 248 -ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A L M ++LN+SN AV +Y Sbjct: 119 PAEHRLRLPMRPGCRSLNLSNTVAVTVYEAWRQ 151 >gi|169349687|ref|ZP_02866625.1| hypothetical protein CLOSPI_00425 [Clostridium spiroforme DSM 1552] gi|169293762|gb|EDS75895.1| hypothetical protein CLOSPI_00425 [Clostridium spiroforme DSM 1552] Length = 169 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 1/150 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G I+R+ VA + I + + ++ ++ + Sbjct: 1 MNHIVLVHPAIPQNTGNIMRTCVATNTVLHIIKPMSFDLDDKKMKRAGLDYVKDLDLRVY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 N + ++K S + + L G E G+ + + S Sbjct: 61 ENYEEFVRKNPGEYHFFTRYSHLCFTDQDFSDSSTDHYLFFGHEHDGIPKEILTKHLDSC 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M +++LN+SN AA+ +Y Sbjct: 121 LRIPMSDKVRSLNLSNCAAICIYEVLRQQN 150 >gi|15966476|ref|NP_386829.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium meliloti 1021] gi|307300487|ref|ZP_07580267.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C] gi|307318352|ref|ZP_07597787.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83] gi|15075747|emb|CAC47302.1| tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021] gi|306896034|gb|EFN26785.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83] gi|306904653|gb|EFN35237.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C] Length = 275 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 93/249 (37%), Gaps = 14/249 (5%) Query: 41 RHTS---QPENLFLYGVHTVSAALNNPSRK-----IFQLLATKNALARLDWDAN-LPHPF 91 + + G V L R+ +L ++ +A + P Sbjct: 23 KERDLTGRQGRFIAEGT-VVLRMLAAAHREGRGIAAEAILLLESRVAGVAELLAQFPPDV 81 Query: 92 PVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV + D I G V + AP + + S L++ +++ N+G Sbjct: 82 PVYVAASRVFDAIAGFNMHRGVLALGRRDAAPGRDALIAGLPQSSLVLAACGISNHDNMG 141 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++ R+A AF D ++ + + G++ +P+ R + ++++ + GF Sbjct: 142 SLFRNAAAFGVDAVLMDSTSCDPMYRKAIRVSVGSVLTLPFAREGTAAELIERLQTAGFV 201 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 GLS + + AL++G EG+GL A + + +LNV+ A Sbjct: 202 VWGLSPRGTADINAIPPAPRTALLVGTEGEGLPETILSQI-RTARIRQRPGLDSLNVAMA 260 Query: 269 AAVALYITQ 277 A +AL+ Sbjct: 261 AGIALHQVA 269 >gi|332884280|gb|EGK04548.1| hypothetical protein HMPREF9456_00875 [Dysgonomonas mossii DSM 22836] Length = 175 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 68/160 (42%), Gaps = 3/160 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + + L++VLD+V +NIG++ R++ AF + + + + + K+A GA Sbjct: 16 EFKSEPKTPLIIVLDNVRSLNNIGSVFRTSDAFLVEAVYLCGITATPPNVEIHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + S+ A++++ G+ + + E K A+ILG E KG++ Sbjct: 76 NSVAWAYYSDTDQAVEELKKNGYTLCAVEQAQNSIMLDELQLDSTKKYAVILGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + G +LNVS AA + ++ Sbjct: 136 QDVVSRCDCCVEIPQYGTKHSLNVSVAAGMVIWEFSKQLK 175 >gi|319405253|emb|CBI78858.1| RNA methyltransferase [Bartonella sp. AR 15-3] Length = 158 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 50/149 (33%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L + L + N G ILR + F I L ++ LE R Sbjct: 1 MALHIALFQPDIAGNTGTILRLSACFGLHVHIIEPAGFDISDRNLKRAGMDYLERASLER 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + + M + + + LS+ +K + L+ G E G+ + A Sbjct: 61 HLDWQNFIDTMQRFNRRLLLLSTKAKTYYTEICYQKNDVLLFGRESAGVPDYVYKAADCT 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN++ + A+ Sbjct: 121 LTIPMLPHARSLNLAISVAMTTGEALRQI 149 >gi|296108132|ref|YP_003619833.1| RNA methyltransferase, TrmH family, group 2 [Legionella pneumophila 2300/99 Alcoy] gi|295650034|gb|ADG25881.1| RNA methyltransferase, TrmH family, group 2 [Legionella pneumophila 2300/99 Alcoy] Length = 149 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 43/147 (29%), Gaps = 3/147 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + L P N G I+R + E + ++ H + Sbjct: 1 MIHIALYQPEIPPNTGNIIRLCANSGAQLHLIHPLGFTLEDKQMRRAGLDY--HQWASIL 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + + S+ K L+ G E GL + S Sbjct: 59 HYESWQTFLQSHSQRRLFCCSAKGKVKYSDVDYKADDILLFGPESCGLPQQILNQ-YSTI 117 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ LY Sbjct: 118 RIPMRENNRSLNLSNAVAIILYEAWRQ 144 >gi|239828668|ref|YP_002951292.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70] gi|239808961|gb|ACS26026.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70] Length = 237 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY---ITQNH 279 + AL+ G E G+ + A + + M G +++ N+S AAA+ALY Sbjct: 140 SRPTALLFGNEHSGVSQEAIRAADATFMIPMYGFVQSFNISVAAALALYDVTERARQ 196 >gi|224372518|ref|YP_002606890.1| 23S rRNA methyltransferase [Nautilia profundicola AmH] gi|223588486|gb|ACM92222.1| 23S rRNA methyltransferase [Nautilia profundicola AmH] Length = 221 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 92/224 (41%), Gaps = 12/224 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG V + + +LL K + + N F + + +T + + + Sbjct: 2 IVYGKRVVEYIIQKHGNIVKELLIAKKLDKK---ELNKLKQFKINFIDNKT-AQKISRNG 57 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG + + +++LD V D NIGAI R+A A D +I T Sbjct: 58 NHQGYFAKI---DFTPGEWEITGNKIVILDGVTDMGNIGAITRTAYALGVDLLIITGIKE 114 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 V+ SA AL+ + + + + + + E +I+ DK+ Sbjct: 115 LKWPQVIRTSAGAALD-----MKILTYHNILDLINILKTKGYIIAGADMGGECKIEADKL 169 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ALILG EG+GL+ K +E + + M +LNVS AA + + Sbjct: 170 ALILGNEGEGLKKKVKEKLDKILSIEMKNGFDSLNVSVAAGILI 213 >gi|160358744|sp|A1L2E4|RML1B_DANRE RecName: Full=RNA methyltransferase-like protein 1B Length = 445 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 37/341 (10%), Positives = 75/341 (21%), Gaps = 64/341 (18%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 +I+ + + Y KL + K+ + + L G H V +AL Sbjct: 99 KVINLTSRTRFGEVDGLLYEKLHPGDKSLAKLARIAGSKKLR--EHQVVLEGKHLVCSAL 156 Query: 62 NNPSR-------------------------------------------KIFQLLATKNAL 78 + + +I + A Sbjct: 157 DAGAEAQTLYFSSVDALRELPLDKLRQTNVVKVKMEDAQVWSELDTSQEIIAIFKRPEAS 216 Query: 79 ARLDWDANLPHPFPVKTVPPQTIDK----------IVGKEAVHQGLALETAPLLSPTLDA 128 + P+ + D L A Sbjct: 217 RLTFSEEKYGRAVPLTLICDTVRDPGNLGSVLRSAAAAGCHSVLLTKGCVDIWELKVLRA 276 Query: 129 VRNSQLLMVLDHVNDPHNIGAILR-----SAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + + + +I L + + + Sbjct: 277 AMGAHFRLPIIPNLTWTDISNHLPKTSTVHVADNHSTTMGKHNDNTTPQKHRRPSDYGWV 336 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 H + + DA + S + + +LI+G E GL + Sbjct: 337 KGHQYQSKAHDDDDANDLCSLEDYCDENSKSLETQLYYTDWVAGHTSLIIGGETHGLSRE 396 Query: 244 TQETATS----MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + M + +LN + AA V L+ + Sbjct: 397 ALQLAERTSGRRLLIPMVDGVDSLNSAIAAGVLLFEGRKQL 437 >gi|330961879|gb|EGH62139.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 151 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G ++R C + + L ++ E+ Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 ++L L+K+ + +P A + G E +GL + + Sbjct: 61 ADLASCLEKIGNPRLFAFTTKG--SRPFHDASFEPGDAFLFGPESRGLPADILDSLNSDH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AVA+Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|269103943|ref|ZP_06156640.1| tRNA (cytosine34-2'-O-)-methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163841|gb|EEZ42337.1| tRNA (cytosine34-2'-O-)-methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 154 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L N G I+R + + E L ++ H + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKLRRAGLDY--HDLAHVYRHK 61 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253 A K + ++ + LI G E +GL + E+ Sbjct: 62 DFAAFKEAMGDRRLFACTTKTTNYHTNAKFEQGDVLIFGPETRGLPAEFIESLPLEQRLR 121 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 122 IPMQPDSRSLNLSNAVAIIAFEAWRQ 147 >gi|310778265|ref|YP_003966598.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926] gi|309747588|gb|ADO82250.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926] Length = 150 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + + ++ +KK ++ G E +G+ + Sbjct: 50 YWNSVDLHTWDSLEELIKANPDSNFYFATTKTKKKYSDVKYEKNDFIVFGPESRGVPEEI 109 Query: 245 QETATS-MAHLHMPGIIKALNVSNAAAVALYITQNH 279 E + M + ++LN+SN+AA+ LY Sbjct: 110 LEANKENCITIPMIKMGRSLNLSNSAAIILYEALRQ 145 >gi|153834908|ref|ZP_01987575.1| RNA methyltransferase, TrmH family, group 2 [Vibrio harveyi HY01] gi|148868634|gb|EDL67718.1| RNA methyltransferase, TrmH family, group 2 [Vibrio harveyi HY01] Length = 159 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 5/149 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L N G I+R + + E + ++ + R + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 L+ + L + + K + L+ G E +GL + E+ Sbjct: 64 QAFLEYLEKEKQGNYRLFACTTKTTGHHVDAKYQEGDVLMFGPETRGLPAEVIESLPMEQ 123 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 RIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152 >gi|315498045|ref|YP_004086849.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB 48] gi|315416057|gb|ADU12698.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB 48] Length = 253 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 14/244 (5%) Query: 36 FNQKSRHTS---QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + + + G + +P + +L T RL +LP P Sbjct: 15 LYRDVKDRDLTGRQGLFMAEGKVVLERLFTSPVAETVSVLTTPE---RLGGLVSLP-DAP 70 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAI 150 V VP ++++ G +H+G L + ++ L + + N+G + Sbjct: 71 VYVVPQGVMNQVAGFP-IHRGYLALGRYAPKQALSERVSGTTARVLALYGIANTDNMGGL 129 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+A AF D ++ + + G + D + + G Sbjct: 130 MRNAAAFGADAVLLDTTCCDPLYRKAIRVSVGG---ALEVPHYRTDDMVGTLRGLGLTPY 186 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 GLS LE+ + + + A++ GAEG GL + + M G +LNV+ + Sbjct: 187 GLSPSGAVTLEEVMPDPRSAVLFGAEGPGLPAELMAAC-RTVRIDMHGGFDSLNVATTSG 245 Query: 271 VALY 274 + LY Sbjct: 246 IVLY 249 >gi|222640835|gb|EEE68967.1| hypothetical protein OsJ_27872 [Oryza sativa Japonica Group] Length = 254 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 9/158 (5%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G+I R+ A + + + L ++ ++ Sbjct: 72 MLHVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYVVVKIH 131 Query: 193 SNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + + + + L+ G+E KGL E + Sbjct: 132 DSWNEFRDYFMKQDGEKRLLAFTKRGTSIHSDFSYKPGDWLVFGSETKGLPQSALEDCSR 191 Query: 251 ------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 + M ++ LN+S + VALY Sbjct: 192 EGLGGGTIRIPMVETYVRCLNLSVSVGVALYEAARQLN 229 >gi|327438727|dbj|BAK15092.1| predicted rRNA methylase [Solibacillus silvestris StLB046] Length = 157 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ +L ++ EH+ + Sbjct: 1 MPNHIVLYQPEIPANTGNIARTCAGTNTSLHLIRPLGFSTDDKMLKRAGLDYWEHVNVVY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPK-TQETAT 249 +L D ++ I SD +++ + G E GL + +E A Sbjct: 61 HDSLEDFIEYSKDGDVYLIETYSDEPFTTHDFSNSERDLYFMFGRETTGLPKEFAKERAD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + I++LN+SN AA+ +Y Sbjct: 121 MCLRIPQSDHIRSLNLSNTAAIVIYEVLRQQN 152 >gi|312195570|ref|YP_004015631.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c] gi|311226906|gb|ADP79761.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c] Length = 308 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 89/259 (34%), Gaps = 32/259 (12%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV------------ 93 G V AAL ++ L ++A AR V Sbjct: 30 EGRFLAEGFQAVEAALATG--RLTDLFVGESAAARFGELVAKVAGTGVPVRPVTDPAAAA 87 Query: 94 --KTVPPQ-----------TIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLD 139 +TV PQ + + G G + L+ V Sbjct: 88 LSETVTPQGLVGVATLPATRLADLTGLRGRPAGEATRPAGGTGQLGQAGMVRPSLVAVCV 147 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 NDP N G ++R+A A D ++ +S++G+L H+P + +L A+ Sbjct: 148 AANDPGNAGTVIRTADAAGADAVVFAGDGVDPFGGKCVRSSAGSLFHLPVVMEPDLGVAV 207 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + G + + S + L + + + G E GL P A ++ + Sbjct: 208 DWLRANGCRVVATSGHGARDLYEAADAGELDGPTGWLFGNEAHGLSPDALAAADAVLRVP 267 Query: 256 MPGIIKALNVSNAAAVALY 274 + G ++LN++ A A+ LY Sbjct: 268 VYGQAESLNLAVATALCLY 286 >gi|332880032|ref|ZP_08447716.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682028|gb|EGJ54941.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 217 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 45/151 (29%), Gaps = 1/151 (0%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + R + + ++ V HN A++R+ F + + + Sbjct: 18 FREIIGQRTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEGRFGKRLDAKIAMGAQ 77 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + + L + K A G E +GL Sbjct: 78 -KWVDVFRYDNTQHCIDSLRAKGYQIVATTPHKDAYFLNDFDISKKSAFFFGTEKEGLSE 136 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + A + + M G ++LN+S A A+ L Sbjct: 137 QVLSQADTFLKIPMVGFTESLNISVAVAIVL 167 >gi|120537815|gb|AAI29485.1| Rnmtl1-b protein [Danio rerio] Length = 448 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 37/341 (10%), Positives = 75/341 (21%), Gaps = 64/341 (18%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 +I+ + + Y KL + K+ + + L G H V +AL Sbjct: 102 KVINLTSRTRFGEVDGLLYEKLHPGDKSLAKLARIAGSKKLR--EHQVVLEGKHLVCSAL 159 Query: 62 NNPSR-------------------------------------------KIFQLLATKNAL 78 + + +I + A Sbjct: 160 DAGAEAQTLYFSSVDALRELPLDKLRQTNVVKVKMEDAQVWSELDTSQEIIAIFKRPEAS 219 Query: 79 ARLDWDANLPHPFPVKTVPPQTIDK----------IVGKEAVHQGLALETAPLLSPTLDA 128 + P+ + D L A Sbjct: 220 RLTFSEEKYGRAVPLTLICDTVRDPGNLGSVLRSAAAAGCHSVLLTKGCVDIWELKVLRA 279 Query: 129 VRNSQLLMVLDHVNDPHNIGAILR-----SAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + + + +I L + + + Sbjct: 280 AMGAHFRLPIIPNLTWTDISNHLPKTSTVHVADNHSTTMGKHNDNTTPQKHRRPSDYGWV 339 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 H + + DA + S + + +LI+G E GL + Sbjct: 340 KGHQYQSKAHDDDDANDLCSLEDYCDENSKSLETQLYYTDWVAGHTSLIIGGETHGLSRE 399 Query: 244 TQETATS----MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + M + +LN + AA V L+ + Sbjct: 400 ALQLAERTSGRRLLIPMVDGVDSLNSAIAAGVLLFEGRKQL 440 >gi|329895795|ref|ZP_08271171.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium IMCC3088] gi|328922157|gb|EGG29514.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium IMCC3088] Length = 158 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 4/151 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI--PYI 190 +VL P N G I+R C+ + + L ++ + Sbjct: 1 MFHVVLFEPEIPPNTGNIMRLCANTGCELHLVEPLGFSLDEKRLRRAGMDYRDISVVTSH 60 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--A 248 R ++ S + ++ + + + +++G E +GL E+ A Sbjct: 61 RNWEECLHAIRVKSPSTRVFACTTKGSQAHTKAVFQSGDIILMGPETRGLPINIIESTPA 120 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA AV LY Sbjct: 121 EYRIRIPMAPESRSLNLSNATAVILYEALRQ 151 >gi|319956345|ref|YP_004167608.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM 16511] gi|319418749|gb|ADV45859.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM 16511] Length = 157 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 33/97 (34%), Gaps = 1/97 (1%) Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + + +A H ++ +++ + + LI G+E +GL + Sbjct: 51 YWKDLDLTVWESIEAFLAEHPIDGHCHLATTKTERLYWEAEYHPGDWLIFGSETEGLPAE 110 Query: 244 TQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M +++N+S A + Y Sbjct: 111 LLQSRPDRCITIPMSPAGRSINLSVAVGIVAYEALRQ 147 >gi|308172881|ref|YP_003919586.1| rRNA methylase [Bacillus amyloliquefaciens DSM 7] gi|307605745|emb|CBI42116.1| putative rRNA methylase [Bacillus amyloliquefaciens DSM 7] gi|328552521|gb|AEB23013.1| rRNA methylase [Bacillus amyloliquefaciens TA208] gi|328910919|gb|AEB62515.1| putative rRNA methylase [Bacillus amyloliquefaciens LL3] Length = 157 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 52/152 (34%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + ++ +L ++ E + + Sbjct: 1 MALHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQET-AT 249 +L + + + F I ++ + G E GL + E Sbjct: 61 HDSLDELFEAYENGKFFFITKFGQKPHTSFDYSNTEEDVFFVFGRETSGLPKELIENNMD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 L M +++LN+SN AA+ +Y Sbjct: 121 RCLRLPMTEHVRSLNLSNTAAILVYEALRQQN 152 >gi|291276915|ref|YP_003516687.1| putative rRNA methylase [Helicobacter mustelae 12198] gi|290964109|emb|CBG39953.1| putative rRNA methylase [Helicobacter mustelae 12198] Length = 251 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 88/246 (35%), Gaps = 7/246 (2%) Query: 31 KKMQSFNQKSRH---TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 KK +QK H + E+L +YG T L + I ++ +K + Sbjct: 2 KKQLRHDQKPTHNPAQPKQEDLIVYGKQTSLYILEQMPQIIKEVYFSKEMERGVFHQFAK 61 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 H P+ + + + + K HQG+ L+ + L ++ S+ L++L + D NI Sbjct: 62 IHK-PILKIDNKK-AQALSKNGNHQGVFLKISALEYTPFKILKKSEKLLILHGITDTGNI 119 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 G+I RSA DGI+ S S + + Sbjct: 120 GSIFRSAYCLGVDGIVLCG--VRGFSIEGVLRTSVGAILQMPFCVVENILDVIHELKNEK 177 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + K AL LG+E GL + + + M +LNV Sbjct: 178 TLCLGADARGEEEGRIAGVQKWALFLGSENTGLPSQVLSKLDRILAIKMHRGFNSLNVGV 237 Query: 268 AAAVAL 273 AA + + Sbjct: 238 AAGILI 243 >gi|198419564|ref|XP_002121605.1| PREDICTED: similar to TAR RNA binding protein 1 [Ciona intestinalis] Length = 1848 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 53/148 (35%), Gaps = 2/148 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++V ++ P N+G + R+ F + +I S+ + S + Sbjct: 1690 LVLVASLIDKPSNLGGLTRTCEVFGAEQMIVHSLSCTSDKLFQSLSVTAHKWLKMSEVKR 1749 Query: 194 NLTDALQKMHSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + ++ L + K ++LG E +G+ P ++ Sbjct: 1750 WELEEYLESMKRQGYALVATEQTEQSVCLTEYKFPPKCVILLGNEKEGIPPNLLRMCSAC 1809 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + G++++LNV + + ++ Sbjct: 1810 IEIPQVGVVRSLNVHVSGGITVWEFTRQ 1837 >gi|319653676|ref|ZP_08007774.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2] gi|317394649|gb|EFV75389.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2] Length = 156 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 49/149 (32%), Gaps = 1/149 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL + P N G I + A + ++ ++ ++ + Sbjct: 1 MAIHVVLYQPDIPANTGNIALTCAATDTSLHLIRPLGFSTDEEMIKRAGFDFWNSVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 ++ D K + + + + + + G E GL E Sbjct: 61 YDSMDDFFSKNQGEFYYIETFGEQAHSSFDFSDASKEHYFMFGKETTGLPKDLLEENKDH 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+S+ AA+ +Y Sbjct: 121 FLRIPMNDNVRSLNLSSTAAILVYEALRQ 149 >gi|294341204|emb|CAZ89605.1| putative RNA methyltransferase TrmH, group 2 [Thiomonas sp. 3As] Length = 156 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R C + + L ++ E+ Sbjct: 1 MFHIVLVEPEIPPNTGNVIRLCANTGCTLHLVEPLGFSLDDKQLRRAGLDYHEYATLQTH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 S+ +Q + + ++ + + + GAE +GL +E T Sbjct: 61 SSWDALMQTLQPRPERLFAFTTRGSRLIGSVRFEPGDCFVFGAETRGLSDAVREQFAPTQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN+ AVA++ Sbjct: 121 RLRLPMREGQRSLNLSNSVAVAVFEAWRQ 149 >gi|153840063|ref|ZP_01992730.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus AQ3810] gi|260903305|ref|ZP_05911700.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus AQ4037] gi|149746359|gb|EDM57408.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus AQ3810] gi|308109535|gb|EFO47075.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus AQ4037] gi|328472240|gb|EGF43110.1| rRNA methylase [Vibrio parahaemolyticus 10329] Length = 159 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 5/149 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L N G I+R + + E + ++ + R N Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKNY 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 L+ + L + + K L+ G E +GL + E Sbjct: 64 QAFLEYLDKEKQGNYRLFACTTKTTGHHVDAQYQAGDVLMFGPETRGLPAEIIEGLPMEQ 123 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 RIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152 >gi|317406253|gb|EFV86497.1| RNA methyltransferase [Achromobacter xylosoxidans C54] Length = 262 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 91/282 (32%), Gaps = 30/282 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS R++ K + + P + L GVH A Sbjct: 1 MKHISS------------------RDNPAVKALLKLAGTAGKRGAP--VLLDGVHLCQAW 40 Query: 61 LNNPSRKIFQLLATKN-ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 L + + + A + A + + + + E+ + T Sbjct: 41 LQHHGAPDQAIFDVERLAQPDIAALAAAVPDARCLALDARLMQALASVESGQGVAFVVTP 100 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 P LS N L D + DP N+G +LR+ A + + + S + +S Sbjct: 101 PPLSLPAAVDENCVLF---DRIQDPGNVGTLLRTCAAAGIKRVFLATGTAAAWSPKVLRS 157 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 GA + +L+ L + T + + A + G EG+G Sbjct: 158 GQGAHFALAIHEHVDLSALLPTLGVPLVATALEGAQDLYAGR---LPARCAWVFGHEGQG 214 Query: 240 LRPKTQETATSMAHLH--MPGIIKALNVSNAAAVALYITQNH 279 + + A + M +++LNV AAA+ L+ + Sbjct: 215 VAAELLAAARLKLRIPHDMA-AVESLNVGAAAAICLFEQRRQ 255 >gi|239637864|ref|ZP_04678825.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus warneri L37603] gi|239596427|gb|EEQ78963.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus warneri L37603] Length = 156 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 1/149 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ +L ++ EH+ Sbjct: 1 MTNHIVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250 N+ + + + + + I G E GL + + + Sbjct: 61 HENIESFFESTDGEYYLLTKFGKQTYSDFDFSDTQNNHYFIFGRETTGLPDWVKDKYQDT 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN AA+ +Y Sbjct: 121 ALRIPMSDKIRSLNLSNTAALLIYEALRQ 149 >gi|291521666|emb|CBK79959.1| Predicted rRNA methylase (SpoU class) [Coprococcus catus GD/7] Length = 169 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 1/149 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R+ VA + ++ ++ H+ Y Sbjct: 1 MSMNIVLLEPEMPANTGNIGRTCVATGTKLHLIKPLGFEITDKMVKRAGLDYWPHLNYEV 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250 N D L+K + ++ ++ + L+ G E G+ + + Sbjct: 61 YENFEDFLEKNPDCIGKLYMATTKARHIYTEVAYEPDSYLMFGKESAGIPEEILVKYEDY 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN+ A+ LY Sbjct: 121 CMRIPMEYNIRSLNLSNSVAIVLYEALRQ 149 >gi|325474590|gb|EGC77776.1| TrmH family RNA methyltransferase [Treponema denticola F0402] Length = 263 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 94/244 (38%), Gaps = 14/244 (5%) Query: 44 SQPENLF-LYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPFPVKTVPPQT 100 + E + G + A + KI +L ++ + + + V Sbjct: 11 KKFEKELPVCGFESCLALAKHHPEKISRLFFSEKRAKQFGEVCKYLASNKRLYRIVSDDE 70 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSA 154 ++K+ + HQG+ P L+ +N + +++LD + + +N+GAI+RSA Sbjct: 71 LEKLS-ESVHHQGVTAMIFEPEIPVLEHEEINLWAQNKEHVLMLDEIGNANNLGAIIRSA 129 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F + I+ TK + A + I + T + IG Sbjct: 130 AFFGIENIVLTKEDKQASITTSAYRVAQGGMEFVKIFKVSSTAWFLRQCRGRLTCIGTDL 189 Query: 215 DSKKPLEQ----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + + K++ ++LG E +G+ + ++ + + G +++LNV+ AA Sbjct: 190 RAHHEIADLGRLIEKDEACVIVLGNEERGISEEAKKLCAHLIKIKGSGNVESLNVAQAAT 249 Query: 271 VALY 274 + + Sbjct: 250 LFCH 253 >gi|110634520|ref|YP_674728.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1] gi|110285504|gb|ABG63563.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1] Length = 153 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 49/151 (32%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + + L + P N GAILR + + L ++ LE Sbjct: 1 MPQLGFRIALFQPDIPGNTGAILRLSACLGLAVDLIEPAGFDLSDRALKRAGMDYLELAA 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R ++ D H + I ++ P + D L+ G E G+ Sbjct: 61 LRRHASWEDFNSWRHQEARRIILFTTAGTVPYQCFSFRDGDILMFGRESSGVPDHVHNAV 120 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LNV+ AAA+A Sbjct: 121 NYRLVIPMKEGTRSLNVAMAAAMACGEAVRQ 151 >gi|323485379|ref|ZP_08090727.1| hypothetical protein HMPREF9474_02478 [Clostridium symbiosum WAL-14163] gi|323694141|ref|ZP_08108320.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673] gi|323401242|gb|EGA93592.1| hypothetical protein HMPREF9474_02478 [Clostridium symbiosum WAL-14163] gi|323501858|gb|EGB17741.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673] Length = 163 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 3/145 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I RS VA + + ++ H+ S+ Sbjct: 3 IVLYEPEMPMNTGNIGRSCVATKTKLHLIEPLGFRLSDREIKRAGLDYWPHLDVTVYSDY 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254 D L + + ++ G E +G+ + E + + Sbjct: 63 RDFLDRNPGAKIYMATTKA--PNVYSDVKYEPDCYIMFGPESRGIPEEILVENQETCVRI 120 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 M G ++LN+SN+ AV LY Sbjct: 121 PMWGETRSLNLSNSVAVILYEALRQ 145 >gi|258620436|ref|ZP_05715474.1| rRNA methyltransferase [Vibrio mimicus VM573] gi|258587315|gb|EEW12026.1| rRNA methyltransferase [Vibrio mimicus VM573] Length = 158 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 4/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193 + L N G I+R + + E + ++ + + + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251 + F+ ++ + + L+ G E +GL + + Sbjct: 64 AAFVEYLQRERGTFRLFACTTKTTQHHVDAKFQQGDVLMFGPETRGLPAELITSLPTEQR 123 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 IRIPMMPEARSLNLSNAVAIIAFEAWRQ 151 >gi|283787764|ref|YP_003367629.1| RNA-methyltransferase [Citrobacter rodentium ICC168] gi|282951218|emb|CBG90911.1| putative RNA-methyltransferase [Citrobacter rodentium ICC168] Length = 159 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 45/149 (30%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + A + L++ L+ G E +GL + A Sbjct: 59 RHHDYAAFLAAEKPQRIFALTTKGTPAHSVVSYQQGDYLLFGPETRGLPASILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|21674078|ref|NP_662143.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS] gi|21647231|gb|AAM72485.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS] Length = 169 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 2/154 (1%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + ++L ++ N+GA+ R+A A D I+ T + + K+A GA E +P+ Sbjct: 14 RHPVTLMLYNIRSMWNVGAMFRTADAAGIDEIVITGYTATPPRKEIDKTALGAQETVPWR 73 Query: 191 RISNLTDALQ--KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ +A+ K S + ++ +S+ + +ALI+G E +G+ Sbjct: 74 HFADPVEAITVLKRESKKIFGLEIAENSRSYSSLTAGDFPLALIVGNEVEGIGDALLSHC 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + G+ +LNV+ AA VAL+ F K Sbjct: 134 DGVIEIPQYGVKHSLNVAVAAGVALFECVRVFRK 167 >gi|418440|sp|P32813|TRML_BACST RecName: Full=Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase in gldA 3'region; AltName: Full=ORF3 gi|142979|gb|AAA22478.1| ORF3 is homologous to an ORF downstream of the spoT gene of E.coli; ORF3 [Geobacillus stearothermophilus] Length = 157 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 52/150 (34%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + + ++ +L ++ E + Sbjct: 1 MALHVVLFQPEIPANTGNIARTCAATNTALHLIRPLGFSTDDKMLRRAGLDYWEFVNIHY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ-ETAT 249 +L Q+ + F I K I I G E GL + E Sbjct: 61 YDSLDHFFQQNQNGDFYYITKFGKRYYTSYDFSDPSKEIFFIFGRETTGLPKELLAENED 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++ALN+SN AA+ +Y Sbjct: 121 RCLRIPMTENVRALNLSNTAAILVYEALRQ 150 >gi|283835989|ref|ZP_06355730.1| RNA methyltransferase, TrmH family, group 2 [Citrobacter youngae ATCC 29220] gi|291068169|gb|EFE06278.1| RNA methyltransferase, TrmH family, group 2 [Citrobacter youngae ATCC 29220] Length = 157 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H + Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFTAVL 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + A + L++ D L+ G E +GL + A Sbjct: 59 RHPDYAAFVAAEHPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDVLPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|242241248|ref|YP_002989429.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech703] gi|242133305|gb|ACS87607.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech703] Length = 157 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 46/151 (30%), Gaps = 4/151 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + L N G I+R A C + E L ++ H Sbjct: 2 FIMFHIALYEPQIAPNTGNIIRLAANNGCTLHLIEPLGFDFEEKKLRRAGLDY--HDLAK 59 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT- 249 + + G + ++ +P ++ L+ G+E GL + Sbjct: 60 VKRHPDYSSFLGAVAGCRIFACTTKGSRPYDEPAYQPGDVLLFGSETAGLPEDIRNGFDP 119 Query: 250 -SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN+ A+ Y Sbjct: 120 AFRIRIPMEPDCRSLNLSNSVAIISYEAWRQ 150 >gi|78044914|ref|YP_359968.1| RNA methyltransferase [Carboxydothermus hydrogenoformans Z-2901] gi|77997029|gb|ABB15928.1| RNA methyltransferase, TrmH family, group 2 [Carboxydothermus hydrogenoformans Z-2901] Length = 153 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 3/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P+N G I R+ A + +E L ++ + + I Sbjct: 1 MFNIVLVEPEIPYNTGNIARTCAATGSTLHLVKPLGFSTEDKYLKRAGLDYWDKVRVIYH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSM 251 N + +K F + K+ + L+ G E +GL + E Sbjct: 61 ENFQELREKYPEGRFFYLSTKG--KRYYHEVSYKPGDFLVFGKETQGLPQELLEANKEFT 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M I++LN+SN A+ +Y Sbjct: 119 FRIPMLPQIRSLNLSNTVAIVVYEALRQL 147 >gi|209963609|ref|YP_002296524.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum centenum SW] gi|209957075|gb|ACI97711.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum centenum SW] Length = 259 Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 52/270 (19%), Positives = 89/270 (32%), Gaps = 19/270 (7%) Query: 15 LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLA 73 +D + + +K S + L G TV AL +P R L A Sbjct: 2 RRDRYRLIESPQNPGFKLWDSLLDRRGLRR-HGRFLLAGRKTVPEALMRHPDRFGTVLAA 60 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 + L LP + P +++ L + + L A Sbjct: 61 DPGQIDALP----LPPGIEALLLAPALFERLDVTGTGFPLLVGSVPAMPAIDLSAPPVGL 116 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+ + DP N+GA++RSA AF +I + + ++A+ A + Sbjct: 117 ELVCA--LGDPANLGALMRSAAAFGVRTLILLEEAAHPFHPKCLRAAANAQFELSLRTGP 174 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 G + + L+LG EG+GL P Sbjct: 175 GWRGLAGIAGPVFGLDGGGHDLTD-----FDWPADVRLVLGEEGQGLPPDL---PVERLA 226 Query: 254 LHMPGIIKALNVSNAAAVALY---ITQNHF 280 + G +++LN AA++ALY ++ H Sbjct: 227 VPTTGAVESLNAMVAASIALYSHHASRRHR 256 >gi|163758758|ref|ZP_02165845.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica DFL-43] gi|162284048|gb|EDQ34332.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica DFL-43] Length = 289 Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 19/250 (7%) Query: 45 QPENLFLYGVHTVSAALNN-----------PSRKIFQLLATKNALARLDWDA-NLPHPFP 92 + + G V AL + I ++L +N + L L P Sbjct: 36 RGDRFIAEG-RVVLQALTDVLDDAGSGRGEARFVIEKVLFLENRIEGLGDLIDRLDADCP 94 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIG 148 V + +D VG A+H+G+ L P+L + + + L++V + + N+G Sbjct: 95 VYVAGREVLDAAVGF-AMHRGILALGRHLPPPSLGGFLEGLPDQALVVVACGIANHDNVG 153 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 I R+A F D ++ + + + GA +P+ R ++ + ++ S GF+ Sbjct: 154 GIFRNAGVFGADAVVLDQSCCDPLYRKAIRVSVGAALRVPFCRGGSILALVGELVSHGFE 213 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 +GLS + L + + L+LG EG+GL + + + + +LNV+ Sbjct: 214 VVGLSPRGAEELSRFQPGRRQVLLLGTEGEGLPEELLNAL-ATLRIEQAPGLDSLNVATT 272 Query: 269 AAVALYITQN 278 + +AL+ Sbjct: 273 SGIALWHIAK 282 >gi|148239457|ref|YP_001224844.1| rRNA methylase [Synechococcus sp. WH 7803] gi|147847996|emb|CAK23547.1| Predicted rRNA methylase [Synechococcus sp. WH 7803] Length = 165 Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 52/157 (33%), Gaps = 9/157 (5%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++ S L + L P N G I R+ AF + + L ++ H+ Sbjct: 3 HLKPSPLRVALFEPRIPPNTGNIARTCAAFDLPLSLIEPLGFSIDDRQLKRAGLDYWPHV 62 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +N + D L+ L+ G E GL ++ Sbjct: 63 NLSVHTNFQAFKNSLAKPFRVIGCSRRD-GVALQGFCFEPGDVLLFGREDTGLPQPVRDQ 121 Query: 248 ATSMAHLHMP--------GIIKALNVSNAAAVALYIT 276 + + MP G +++LN+S A A+A + Sbjct: 122 CDQILTIPMPCSADSDGQGGVRSLNLSVACAIACFQA 158 >gi|73540016|ref|YP_294536.1| RNA methyltransferase TrmH, group 2 [Ralstonia eutropha JMP134] gi|72117429|gb|AAZ59692.1| RNA methyltransferase TrmH, group 2 [Ralstonia eutropha JMP134] Length = 156 Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P E A + ++ E+ Sbjct: 1 MFHVVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLEDARMRRAGLDYHEYATMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + L++ P Q + G+E +GL P+ +E+ + Sbjct: 61 DSWDALMASEQPDPSRMFALTTHGSTPFGQVSFQPGDWFVFGSETRGLAPERRESFPPSQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RIRLPMRPNNRSLNLSNTVAVVVFEAWRQ 149 >gi|78358620|ref|YP_390069.1| RNA methyltransferase TrmH, group 3 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221025|gb|ABB40374.1| RNA methyltransferase TrmH, group 3 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 253 Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 89/231 (38%), Gaps = 12/231 (5%) Query: 53 GVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 G+ V L ++ + K NA H V +DK+ Sbjct: 16 GIKPVLDQLRQSPDRVDSVTIRKGRKNADTDAIVTLCRRHGIRFTFVQDTALDKLFS--G 73 Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ ++ V +L++ LD V DP N G + R+ A GII Sbjct: 74 NHQGVVARVFNAGYVEVEDVLEAALASPLKLVLALDQVQDPGNAGTLARTLYALGGGGII 133 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQ 222 K + + + K+++GAL +P R +NL+ AL+ D Sbjct: 134 MPKHNASALGSAAVKASAGALARLPVARATNLSRALETAADQGFSIYAARFDDGSVNAFT 193 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + L+LG E KG+RP + T+ H+ M +LNV+ A A+ + Sbjct: 194 ARLDTPAVLVLGNEDKGVRPGVAKRCTASIHIPMQREFDSLNVAQAGAMLM 244 >gi|258654263|ref|YP_003203419.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM 44233] gi|258557488|gb|ACV80430.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM 44233] Length = 271 Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 100/264 (37%), Gaps = 13/264 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYG----VHTVSAALNNPSRKIFQLLATKNALA 79 R++R ++SR + G ++ A NP + +L T A A Sbjct: 4 ERSNRIV-AAHKLLRRSR-RVEAGEFLAEGAPAVAEAIAHAAENPG-AVLELYLTAAAGA 60 Query: 80 RLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137 R V V + + + + P+ S + +L+ V Sbjct: 61 RHTELVRRAYAAGITVTQVTDRAAASLSDAVSPQGLVVRCALPMTSVADLLAGSPKLVAV 120 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L +DP N G ++R A A DG+I + +A ++++G++ H+P + + Sbjct: 121 LVQTSDPGNTGTVIRLADAAGADGVIVAGEAADPWNAKAIRASAGSVFHLPVVPARDPAA 180 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPKTQETATSMAH 253 + ++ + G + + + L A + G+E GL + A Sbjct: 181 LIGELTAAGLSVLASTGQADVELGSAQAEGILDLPTAWLFGSEAHGLPAEIIGRADERIR 240 Query: 254 LHMPGIIKALNVSNAAAVALYITQ 277 + + G ++LN++ AAAV LY + Sbjct: 241 IPIYGRAESLNLAAAAAVCLYASA 264 >gi|91781671|ref|YP_556877.1| RNA methyltransferase TrmH, group 2 [Burkholderia xenovorans LB400] gi|91685625|gb|ABE28825.1| RNA methyltransferase TrmH, group 2 [Burkholderia xenovorans LB400] Length = 156 Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A + ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDARMRRAGLDYHEYAQMNVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT-S 250 ++ + K + ++ + + GAE +GL + A Sbjct: 61 ADWAAFIAKESPDPARMFAFTTRGSGRFHERAFQSGDWFVFGAETRGLPDPVLGQFADEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149 >gi|299689343|pdb|3N4J|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis gi|299689345|pdb|3N4K|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis In Complex With S- Adenosyl-L-Homocysteine. gi|299689346|pdb|3N4K|B Chain B, Putative Rna Methyltransferase From Yersinia Pestis In Complex With S- Adenosyl-L-Homocysteine Length = 165 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 45/153 (29%), Gaps = 5/153 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R C + + L ++ E Sbjct: 4 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHH 63 Query: 193 SNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-- 247 + L Q L + L+ G E +GL + Sbjct: 64 HDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALP 123 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M +++N+SNA +V +Y Sbjct: 124 AQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 156 >gi|300714677|ref|YP_003739480.1| rRNA methyltransferase CspR [Erwinia billingiae Eb661] gi|299060513|emb|CAX57620.1| rRNA methyltransferase CspR [Erwinia billingiae Eb661] Length = 157 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFAWDDKRLRRAGLDY--HEFTAIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + A + L++ L+ G E +GL A Sbjct: 59 HHADYAAFLSAEAPQRLFALTTKGTPAHSAVSYQPGDYLLFGPETRGLPADILNALPAQQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMQPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|171915687|ref|ZP_02931157.1| putative RNA methylase [Verrucomicrobium spinosum DSM 4136] Length = 158 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 2/148 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL PHN GA+ R +A + + L ++ + + Sbjct: 1 MLHIVLYQPEIPHNTGAVGRLCLATGARLHLIKPLGFSIDDKQLKRAGLDYWKDVDVRVW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 D + G L++ + + + L+ G E +GL E S Sbjct: 61 DRFEDLQAEAAPSGAPFYYLTTKTTQTYWNATFPAECYLVFGPETRGLPESLLAEQPASC 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ A + LY Sbjct: 121 LRIPML-DTRSLNLATAVGIVLYEAVRQ 147 >gi|167945644|ref|ZP_02532718.1| RNA methyltransferase TrmH, group 2 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 87 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 AL+ G E +GL ++ + M +++LN+SNA A+ LY Sbjct: 24 FEAGDALLFGPETRGLPQALLDSLPEQQQLRIPMRPEVRSLNLSNAVALILYEAWRQ 80 >gi|45439935|ref|NP_991474.1| putative methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|108809463|ref|YP_653379.1| putative methyltransferase [Yersinia pestis Antiqua] gi|108813940|ref|YP_649707.1| methyltransferase [Yersinia pestis Nepal516] gi|145601075|ref|YP_001165151.1| methyltransferase [Yersinia pestis Pestoides F] gi|150260867|ref|ZP_01917595.1| predicted rRNA methylase [Yersinia pestis CA88-4125] gi|153949233|ref|YP_001399082.1| RNA methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|162420361|ref|YP_001604714.1| RNA methyltransferase [Yersinia pestis Angola] gi|165926204|ref|ZP_02222036.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Orientalis str. F1991016] gi|165936183|ref|ZP_02224752.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Orientalis str. IP275] gi|166011519|ref|ZP_02232417.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Antiqua str. E1979001] gi|166213678|ref|ZP_02239713.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Antiqua str. B42003004] gi|167398819|ref|ZP_02304343.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419141|ref|ZP_02310894.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426653|ref|ZP_02318406.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468388|ref|ZP_02333092.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis FV-1] gi|170026342|ref|YP_001722847.1| RNA methyltransferase [Yersinia pseudotuberculosis YPIII] gi|218927290|ref|YP_002345165.1| putative methyltransferase [Yersinia pestis CO92] gi|229836184|ref|ZP_04456352.1| predicted rRNA methylase [Yersinia pestis Pestoides A] gi|229839920|ref|ZP_04460079.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842002|ref|ZP_04462157.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str. India 195] gi|229904469|ref|ZP_04519580.1| predicted rRNA methylase [Yersinia pestis Nepal516] gi|270488468|ref|ZP_06205542.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis KIM D27] gi|294502174|ref|YP_003566236.1| putative methyltransferase [Yersinia pestis Z176003] gi|123777848|sp|Q74Y93|TRML_YERPE RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL gi|45434790|gb|AAS60351.1| putative methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|108777588|gb|ABG20107.1| methyltransferase [Yersinia pestis Nepal516] gi|108781376|gb|ABG15434.1| putative methyltransferase [Yersinia pestis Antiqua] gi|115345901|emb|CAL18760.1| putative methyltransferase [Yersinia pestis CO92] gi|145212771|gb|ABP42178.1| methyltransferase [Yersinia pestis Pestoides F] gi|149290275|gb|EDM40352.1| predicted rRNA methylase [Yersinia pestis CA88-4125] gi|152960728|gb|ABS48189.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pseudotuberculosis IP 31758] gi|162353176|gb|ABX87124.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis Angola] gi|165915797|gb|EDR34405.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Orientalis str. IP275] gi|165922064|gb|EDR39241.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Orientalis str. F1991016] gi|165989665|gb|EDR41966.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Antiqua str. E1979001] gi|166205080|gb|EDR49560.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Antiqua str. B42003004] gi|166963135|gb|EDR59156.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051323|gb|EDR62731.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054342|gb|EDR64159.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752876|gb|ACA70394.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pseudotuberculosis YPIII] gi|229678587|gb|EEO74692.1| predicted rRNA methylase [Yersinia pestis Nepal516] gi|229690312|gb|EEO82366.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str. India 195] gi|229696286|gb|EEO86333.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706632|gb|EEO92638.1| predicted rRNA methylase [Yersinia pestis Pestoides A] gi|262360253|gb|ACY56974.1| putative methyltransferase [Yersinia pestis D106004] gi|262364200|gb|ACY60757.1| putative methyltransferase [Yersinia pestis D182038] gi|270336972|gb|EFA47749.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis KIM D27] gi|294352633|gb|ADE62974.1| putative methyltransferase [Yersinia pestis Z176003] gi|320013423|gb|ADV96994.1| putative rRNA methylase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 162 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 45/153 (29%), Gaps = 5/153 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R C + + L ++ E Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHH 60 Query: 193 SNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-- 247 + L Q L + L+ G E +GL + Sbjct: 61 HDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALP 120 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M +++N+SNA +V +Y Sbjct: 121 AQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 153 >gi|257063675|ref|YP_003143347.1| predicted rRNA methylase SpoU family [Slackia heliotrinireducens DSM 20476] gi|256791328|gb|ACV21998.1| predicted rRNA methylase SpoU family [Slackia heliotrinireducens DSM 20476] Length = 159 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 51/154 (33%), Gaps = 2/154 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + +VL P N G + R+ + L +S + + Sbjct: 1 MSDKPHIHVVLFEPEIPQNTGNVARTCAVVGATLHLVEPMGFRLTERNLKRSGCDYWDDV 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQE 246 ++ +++ L + + +++ + + L+ G E +G+ Sbjct: 61 DVVKHASVEAFLSQHGNDELHLFTSHTETCYTDVRYGEGGGDVYLVFGRESRGIDEDVLA 120 Query: 247 -TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+SNA AV +Y Sbjct: 121 AHVDRCVRIPMRHNMRSLNLSNAVAVGVYEVIRQ 154 >gi|167579696|ref|ZP_02372570.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia thailandensis TXDOH] Length = 156 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A + ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMHVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + +T ++ + G+E +GL P E Sbjct: 61 RDWDAFVAAEAPDPARTFAFTTRGSGRFHDRAFQPGDWFVFGSETRGLAPALVERFAPEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149 >gi|291619429|ref|YP_003522171.1| YibK [Pantoea ananatis LMG 20103] gi|291154459|gb|ADD79043.1| YibK [Pantoea ananatis LMG 20103] gi|327395751|dbj|BAK13173.1| tRNA/rRNA methyltransferase YibK [Pantoea ananatis AJ13355] Length = 157 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFAWDDKRLRRAGLDY--HEFTAIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + L++ L+ G E +GL + + A Sbjct: 59 FHADYQAFIATEQPERLFALTTKGTPAHSAVNYQSGDYLLFGPESRGLPAEILQALPAAQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMAESRSMNLSNAVSVVVYEAWRQL 148 >gi|269966824|ref|ZP_06180897.1| rRNA methyltransferase [Vibrio alginolyticus 40B] gi|269828491|gb|EEZ82752.1| rRNA methyltransferase [Vibrio alginolyticus 40B] Length = 159 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 5/149 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L N G I+R + + E + ++ + R N Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKNY 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 L+ + L + + K L+ G E +GL + ++ Sbjct: 64 QAFLEYLEKERQGNYRLFACTTKTTGHHVDAQYQTGDVLMFGPETRGLPAEIIDSLPMEQ 123 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 RIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152 >gi|158520421|ref|YP_001528291.1| methyltransferase GidB [Desulfococcus oleovorans Hxd3] gi|158509247|gb|ABW66214.1| methyltransferase GidB [Desulfococcus oleovorans Hxd3] Length = 490 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 52/280 (18%), Positives = 100/280 (35%), Gaps = 20/280 (7%) Query: 6 KKKSEKIFSLKDSHYAKL--RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 ++ +K ++ + H + N+ +K+++ R + + GV V+ AL Sbjct: 228 SRRQQKAAAM-NRHRVHVIESENNARFKELKKLLG-GRGVKKQNLALVAGVKPVTEALAA 285 Query: 64 PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI-VGKEAVHQGLALETAPLL 122 + + ++ + N P + + P + + V L ++ + Sbjct: 286 FPDQCRAWITRQDQTPPPE---NAPSHLAWEQLAPALFEALDVFGTRAPLLLFEPSSMGV 342 Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + L++ DP N GA +RSAVAF I+ + ++++G Sbjct: 343 WRPDEGFSPGCTLLLPFQ--DPENAGAAIRSAVAFGAAKIVLLSECAHPFHPKTIRASAG 400 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 A+ H P I S P+ L+ G EG GL Sbjct: 401 AVLHAPLFEGP------SLKDLPEDLPIVPLSMEGAPITGFSFPAAFGLLAGIEGPGLPD 454 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + A + + G +++LN + A AVALY + K Sbjct: 455 AWRSRA---VSIPVTGAVESLNAATAIAVALY-AWSQAGK 490 >gi|94968939|ref|YP_590987.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter versatilis Ellin345] gi|94550989|gb|ABF40913.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter versatilis Ellin345] Length = 161 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 1/144 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+V +N+GA R+A + + + ++K+A GA E +P+ + Sbjct: 11 VLLDNVRSMYNVGAFFRAADGVNLQKLCLCGITAHPPKKAISKTALGAEETVPWEHGWDA 70 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHL 254 + + + + GFQ + ++ + + + + ++ G E GL P+ A + Sbjct: 71 VEMAKHLRAEGFQLAAIETNPEATDLFDWQPRFPVCVVFGHEVGGLLPELLALADVHMRI 130 Query: 255 HMPGIIKALNVSNAAAVALYITQN 278 M G +LNV+ A V LY Sbjct: 131 PMRGEKTSLNVATAGGVVLYELLR 154 >gi|257791075|ref|YP_003181681.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243] gi|257474972|gb|ACV55292.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243] Length = 156 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 3/148 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I R+ + LA++ + + +R Sbjct: 4 PLNIVLVEPEIPQNTGNIARTCACTGARLHLVEPMGFRLTQKNLARAGCDYWDEVDIVRW 63 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSM 251 + + + + L+ G E +GL E A Sbjct: 64 PCAEAFFEAHAADELHLFTGQACRGFGD--VAYGEGSFLVFGRESRGLPLGLIEAHANRC 121 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+SNA AVA Y Sbjct: 122 VRIPMREGLRSLNLSNAVAVAAYEALRQ 149 >gi|307106389|gb|EFN54635.1| hypothetical protein CHLNCDRAFT_17312 [Chlorella variabilis] Length = 195 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 11/154 (7%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ +V+ HN+G + R A AF+ + + S + + Sbjct: 1 YLITYNVSKKHNLGTLARCATAFNVRQLCLVG---SRQFNTFGAHGSSEYVDFCHYNTLD 57 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 K + D +P+ + A +LG EG+GL K S ++ Sbjct: 58 ECCQDLKDNKGCTVVGVEIIDGAQPVHRFPFRGNTAFMLGNEGQGLNEKQLALCDSFLYI 117 Query: 255 HMPG-IIKALNVSNAAAVALYITQ-------NHF 280 G +LNV+ AA++ L+ Sbjct: 118 PQYGAGTASLNVAVAASIVLHHFALHAGYGERQR 151 >gi|218258662|ref|ZP_03474983.1| hypothetical protein PRABACTJOHN_00638 [Parabacteroides johnsonii DSM 18315] gi|218225287|gb|EEC97937.1| hypothetical protein PRABACTJOHN_00638 [Parabacteroides johnsonii DSM 18315] Length = 179 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 3/159 (1%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L++VLDHV +N+G++ R++ AF + I + A + K+A GA E Sbjct: 20 FKDSEKIPLVVVLDHVRSLNNVGSVFRTSDAFRVESIYLCGITACPPHAEIHKTALGAEE 79 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRP 242 + + + DA+ K+ G+ + + KN K A+I+G E KG++ Sbjct: 80 TVGWEYFEDTMDAVDKLKQQGYTVCAVEQAEGSTMLDKLLLDKNKKYAVIMGNEVKGVQQ 139 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + G +LNVS + ++ + Sbjct: 140 CVVDNCDMCIEIPQYGTKHSLNVSVTTGIIIWDFFKQLS 178 >gi|218528712|ref|YP_002419528.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium chloromethanicum CM4] gi|218521015|gb|ACK81600.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium chloromethanicum CM4] Length = 149 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 50/147 (34%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L + L + P N G +LR + I L +S L+H+ R Sbjct: 1 MLRLALYQPDIPQNTGTMLRMSACLGIAVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + + + ++ P Q D L++G E G+ A + Sbjct: 61 RSWDAFEAWRRETDIRLVLATTTGSVPYTQHAFRDGDCLLMGRESAGVPEAVHAAADARV 120 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + + +++LNV+ AA+ L Sbjct: 121 VVPIRPGLRSLNVAICAAMMLGEAIRQ 147 >gi|114769930|ref|ZP_01447540.1| spoU rRNA methylase family protein [alpha proteobacterium HTCC2255] gi|114549635|gb|EAU52517.1| spoU rRNA methylase family protein [alpha proteobacterium HTCC2255] Length = 147 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 22/59 (37%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L++G E G+ + S L M G ++LNV+ A +AL Sbjct: 86 WDFKFKSTDTLVMGRESAGVPNEVHNACDSHIKLPMYGKARSLNVAMTAGMALSEALKQ 144 >gi|294891839|ref|XP_002773764.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983] gi|239878968|gb|EER05580.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983] Length = 301 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 80/280 (28%), Gaps = 37/280 (13%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90 K + + + + E +F+ G+ T+ + ++ +N L+ Sbjct: 13 KYIVRLRKSRKFREEQERVFVKGLDTIRTIAAAGQKFDTLMVVAENPSIALEGGVAANRT 72 Query: 91 FPVKTVPPQTIDKIVGKEAVHQG---------LALETAPLLSPTLDAVRNSQ-------- 133 VP ++ I + + +D Sbjct: 73 L---RVPRDLLEHITYNHHFNAHLYGVTDERLCVGDIEMPKHAEIDWESGVCSERVPTES 129 Query: 134 ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 +++ LD + N+G +L++A A ++ T + + + I Sbjct: 130 FPEIVLCLDGLQYTDNVGRLLKTAWAVGVSRVVLTPESCDPWDWKVLEESGAKYWDKMPI 189 Query: 191 RISNLTDALQKMHSWGF-------------QTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 L K + Q KK + + +++G+E Sbjct: 190 HTGVDAVRLLKFCAARQLLPVVATSSGVGRQGTEPLPTVKKLNVRNAGYRGVMVVVGSEA 249 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +G + E T L M +LN S A V LY Sbjct: 250 RGPSMELLECCT-RVTLPMSMAADSLNASVAGGVLLYDIA 288 >gi|229826636|ref|ZP_04452705.1| hypothetical protein GCWU000182_02012 [Abiotrophia defectiva ATCC 49176] gi|229789506|gb|EEP25620.1| hypothetical protein GCWU000182_02012 [Abiotrophia defectiva ATCC 49176] Length = 164 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 1/99 (1%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G + + ++ +KK + I + ++ G E G+ Sbjct: 47 GMDYWKDLELYVYEDFNDFVSKNPNARIYMATTKAKKAYTEVIYEENDFIMFGKESAGIP 106 Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + + M G I++LN+SN+ A+ LY Sbjct: 107 EEILIKYEDTSVRIPMIGEIRSLNLSNSVAIMLYEALRQ 145 >gi|89076382|ref|ZP_01162715.1| putative rRNA methylase, SpoU family protein [Photobacterium sp. SKA34] gi|89047953|gb|EAR53544.1| putative rRNA methylase, SpoU family protein [Photobacterium sp. SKA34] Length = 154 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 2/97 (2%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 H + G + ++ + L+ G E +GL + Sbjct: 51 YHDLAHVHRHKDFTAFMQAMEGRRIFACTTKTTNFHTNAKFEQGDVLLFGPETRGLPAEF 110 Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M ++LN+SNA A+ + Sbjct: 111 IASQPLEQRLRIPMQPDSRSLNLSNAVAIIAFEAWRQ 147 >gi|320581168|gb|EFW95389.1| Ribose methyltransferase [Pichia angusta DL-1] Length = 378 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 66/316 (20%), Positives = 115/316 (36%), Gaps = 56/316 (17%) Query: 13 FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS-------QPENLFLYGVHTVSAALNNPS 65 H+AK ++ + F + P +LYG + V AAL Sbjct: 61 KRKHAHHHAKQKKREPQRDEKPEFTRSQALRKTISQLKLNPLVEYLYGTNPVLAALKAQQ 120 Query: 66 RKIF--QLLATKNALARLDWDANLPHPFPVKTVP---PQTIDKIVGKEAVHQGLALETAP 120 R+ F L + +L L + ++ + VH G+ +ET P Sbjct: 121 RESFGTLYLHNPKSTPKLAEILALARELELPVKSEYGKHDLNLMT-NNGVHNGIVVETKP 179 Query: 121 LLSPTLDA---------------------------VRNSQLLMVLDHVNDPHNIGAILRS 153 + L L + +D ++DPHN+GAILRS Sbjct: 180 IEVEQLRCLAASEIGKFTVTKEHVGATESSVSSTAAERYPLALYIDEISDPHNMGAILRS 239 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A D I+ ++R S V++K++SGALE +P ++ S G+ I Sbjct: 240 AYFLGVDCIVVSERNCAPLSPVVSKTSSGALEFLPIYSSQKPLRFFEESRSNGWTIISSV 299 Query: 214 SDSKKPLEQEIK-----------NDKIALILGAEGKGLRPKTQETATSMAHL-----HMP 257 + S+ + N L++G+EG+G+R + + + + + Sbjct: 300 APSESGRMGSKQIDADTLKGQLQNGPCMLVVGSEGQGIRTSLLQRSDFLVSVNSGRADLD 359 Query: 258 GIIKALNVSNAAAVAL 273 + +LN S A A+ L Sbjct: 360 ESVDSLNASVATALLL 375 >gi|160946170|ref|ZP_02093381.1| hypothetical protein PEPMIC_00132 [Parvimonas micra ATCC 33270] gi|158447693|gb|EDP24688.1| hypothetical protein PEPMIC_00132 [Parvimonas micra ATCC 33270] Length = 159 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 34/96 (35%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + ++ +K+ ++ + ++ G E KG+ + Sbjct: 45 YWDKLKLFVYENIEDFYEKNPNANIYFSTTKAKRTYDKVEYSPNDYIMFGKESKGIPEEI 104 Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M G I++LN+SN+ ++ LY Sbjct: 105 LVKNEEHCVRIPMWGEIRSLNLSNSVSIVLYEALRQ 140 >gi|119357220|ref|YP_911864.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM 266] gi|119354569|gb|ABL65440.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM 266] Length = 180 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 62/151 (41%), Gaps = 2/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + ++LD++ N+GA+ R+A A + II T + + K+A GA E + + Sbjct: 24 PRHPVTLMLDNIRSMWNVGAMFRTADAAGIEKIILTGYTAAPPRKEIDKTALGAQETVRW 83 Query: 190 IRISN--LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + A K + ++ S+ + + LI+G E G+ + Sbjct: 84 EYCESALEAIATLKARGVKICALEIAEPSRPYTAMRKTDFPLCLIVGNEVDGIGDELLRE 143 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + G +LNV+ AA V+L+ Sbjct: 144 CDEVIEIPQYGAKHSLNVAVAAGVSLFEFIR 174 >gi|45657881|ref|YP_001967.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601122|gb|AAS70604.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 220 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 8/200 (4%) Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL----- 135 +P V V +D +V HQG+ AP T D + L Sbjct: 13 EKILNKIPSFVQVHKVSVSKLDSLV-PGRNHQGIVALKAPSKQTTFDKKNLEEFLSEKPG 71 Query: 136 --MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++LD + DP N+G ILR+A F II +R S + V+ K ASGAL + + Sbjct: 72 AFLILDRIQDPGNLGNILRTAECFGVTNIILPERESAGITPVVEKVASGALSFLKIFTVK 131 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL + L+ + G+ + S + + +++ +++G EG+G++ E + + Sbjct: 132 NLANTLELLKENGYWIVSTSDRGTEDWSKLPDLNELVILMGNEGEGIKRILMEKSDFVLR 191 Query: 254 LHMPGIIKALNVSNAAAVAL 273 + M G + +LNV+ A + L Sbjct: 192 IPMYGNLSSLNVTVATGIVL 211 >gi|305667310|ref|YP_003863597.1| spoU protein [Maribacter sp. HTCC2170] gi|88709357|gb|EAR01590.1| spoU protein [Maribacter sp. HTCC2170] Length = 216 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 1/144 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + + ++ V HN A++RS F + + + Sbjct: 29 RTKYVTVAIEDVFQLHNTSAVIRSCEVFGLQDAHVIENRFGKRLDKNIAMGAQQWVDVKR 88 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + + D L + K AL G E +GL + + A Sbjct: 89 HEDTESCISHLRDQGYQIIATTPHDD-SCLLNDFNLDKKTALFFGTEKEGLSEEVMQKAD 147 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + M G ++LN+S +AA+ L Sbjct: 148 GFLKIPMVGFTESLNISVSAAIIL 171 >gi|293401528|ref|ZP_06645671.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305166|gb|EFE46412.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 169 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 2/150 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G ++R+ +A + + + A L ++ ++ + Y Sbjct: 1 MLHLVLYEPEIPQNTGNMMRTCMATNTKLHLIQPLGFSLDEAHLRRAGMDYMKELDYRLY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQ-ETATS 250 N D ++ S + + + + L+LG E G+ + Sbjct: 61 ENWDDFTKQNPSNNYYYMTRYGKQAPSQIDFTQCEGDIYLVLGKESTGIPKAILAKQLDH 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN AA+ +Y Sbjct: 121 CMRLPMVANARSLNLSNCAAIIVYEVLRQL 150 >gi|309798986|ref|ZP_07693243.1| SpoU rRNA Methylase family protein [Streptococcus infantis SK1302] gi|308117390|gb|EFO54809.1| SpoU rRNA Methylase family protein [Streptococcus infantis SK1302] Length = 128 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + AL++G EG+G+ P + A + H+ M G ++LNV+ AA + ++ Sbjct: 78 EDFALVMGNEGQGISPFMTDQADQLVHISMKGQAESLNVAIAAGILMFYL 127 >gi|262037359|ref|ZP_06010824.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii F0264] gi|261748616|gb|EEY35990.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii F0264] Length = 259 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 78/236 (33%), Gaps = 9/236 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + G ++ + +++ ++ + N+ V + Sbjct: 24 YRDENNIFKTEGEKFLNE-----NINFNKIIIKESKYDYFNEKYNIEEYNNVTVLKDDLF 78 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 +++ + + ++VLD V DP N+G I+R+ A Sbjct: 79 EEVS----TQENSQGIIFLFSKDLNSINDIEEDVVVLDDVQDPGNLGTIMRTMEAAGFKN 134 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 +I TK + ++ G + ++ I + + Sbjct: 135 LILTKGSVDVYNPKTVRATMGGIFNLNIIYETPENILKFLKEKEYLIITTALHEDAVSYG 194 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + K A I G EG G+ E + + + + G I++LNVS A + LY + Sbjct: 195 KIELKKKNAYIFGNEGGGVSDYFIENSDIKSIIPIYGNIESLNVSIAVGIFLYKMR 250 >gi|156081941|ref|XP_001608463.1| RNA methyltransferase domain containing protein [Plasmodium vivax SaI-1] gi|148801034|gb|EDL42439.1| RNA methyltransferase domain containing protein [Plasmodium vivax] Length = 214 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 52/145 (35%), Gaps = 2/145 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + + + ++ NIG+I+RS VAF I R + + + + Sbjct: 1 MYVAIYNIGKKKNIGSIVRSCVAFRVSKIFVVSRKKNQVNFFGHMGTCEYITIEYFSSMK 60 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 L L+ + SS N A + G EG G+ +T + + Sbjct: 61 ELKTHLRDNGILLYACEITSSAVPVTRRPFE-NKDTAFLFGNEGTGINDETLSYCDKVVY 119 Query: 254 LHMPGI-IKALNVSNAAAVALYITQ 277 + G +LNVS + A+ L+ Sbjct: 120 IPQYGNGTCSLNVSVSCAIILHHFA 144 >gi|332307769|ref|YP_004435620.1| RNA methyltransferase, TrmH family, group 2 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175098|gb|AEE24352.1| RNA methyltransferase, TrmH family, group 2 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 165 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 4/155 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 V N L +VL P N G I+R + + + ++ H Sbjct: 7 YVTNFMLDIVLYQPEIPPNTGNIIRLCANTGFALHLIEPLGFEWDDKRVRRAGLDY--HE 64 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + + + ++ + AL+ G E +GL + ++ Sbjct: 65 FANVVRHASLEAYIESRQPKRVFACTTKGTTFFAKAEYQKGDALLFGPETRGLPNEVIQS 124 Query: 248 A--TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 125 LPPEQRVRIPMLADSRSMNLSNAVSVFVYEAWRQL 159 >gi|24214562|ref|NP_712043.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601] gi|24195527|gb|AAN49061.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601] Length = 220 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 8/200 (4%) Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL----- 135 +P V V +D +V HQG+ AP T D + L Sbjct: 13 EKILNKIPSFVQVHKVSVSKLDSLV-PGRNHQGIVALKAPSKQTTFDKKNLEEFLSEKPG 71 Query: 136 --MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++LD + DP N+G ILR+A F II +R S + V+ K ASGAL + + Sbjct: 72 AFLILDRIQDPGNLGNILRTAECFGVTNIILPERESAGITPVVEKVASGALSFLKIFTVK 131 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL + L+ + G+ + S + + +++ +++G EG+G++ E + + Sbjct: 132 NLANTLELLKENGYWIVSTSDRGTEDWSKLPDLNELVILMGNEGEGIKRILMEKSDFVLR 191 Query: 254 LHMPGIIKALNVSNAAAVAL 273 + M G + +LNV+ A + L Sbjct: 192 IPMHGNLSSLNVTVATGIVL 211 >gi|28899635|ref|NP_799240.1| rRNA methylase [Vibrio parahaemolyticus RIMD 2210633] gi|260361516|ref|ZP_05774563.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus K5030] gi|260879125|ref|ZP_05891480.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus AN-5034] gi|260895488|ref|ZP_05903984.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus Peru-466] gi|28807887|dbj|BAC61124.1| rRNA methylase, SpoU family [Vibrio parahaemolyticus RIMD 2210633] gi|308088066|gb|EFO37761.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus Peru-466] gi|308091610|gb|EFO41305.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus AN-5034] gi|308112865|gb|EFO50405.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus K5030] Length = 159 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 5/149 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L N G I+R + + E + ++ + R N Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKNY 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 L+ + L + + K L+ G E +GL + E Sbjct: 64 QAFLEYLDKEKQGNYRLFACTTKTTGHHVDAQYKAGDVLMFGPETRGLPAEIIEGLPMEQ 123 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 RIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152 >gi|254714766|ref|ZP_05176577.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M644/93/1] gi|254717827|ref|ZP_05179638.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M13/05/1] Length = 159 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 1/152 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +L + L + P N G ILR A + L ++ LE R Sbjct: 1 MELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRTLKRAGMDYLEQAALTR 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + G + + LS+ + P + L+ G E G+ + A Sbjct: 61 HPDWNRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADER 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282 + M ++LN++ + A+ +K Sbjct: 121 LLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 152 >gi|88858423|ref|ZP_01133065.1| putative tRNA/rRNA methyltransferase [Pseudoalteromonas tunicata D2] gi|88820040|gb|EAR29853.1| putative tRNA/rRNA methyltransferase [Pseudoalteromonas tunicata D2] Length = 154 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + + ++ H Sbjct: 1 MLDIVLYQPEIPPNTGNIIRLCANTGYSLHLIEPLGFEWDDKRVRRAGLDY--HEFSHVK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + ++ P Q L+ G E +GL + E+ Sbjct: 59 RHPSLESYLATEKPKKVYACTTKGSGPYHQAQFAAGDCLLFGPETRGLPMEIIESLPNEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA AV +Y + Sbjct: 119 RLRIPMQPNSRSMNLSNAVAVFIYESWRQL 148 >gi|294638286|ref|ZP_06716539.1| RNA methyltransferase, TrmH family, group 2 [Edwardsiella tarda ATCC 23685] gi|291088539|gb|EFE21100.1| RNA methyltransferase, TrmH family, group 2 [Edwardsiella tarda ATCC 23685] Length = 157 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIEPLGFTWDDKRLRRAGLDY--HEFADIR 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + A + L++ L+ G E +GL + A Sbjct: 59 RHHDYATFLASECPQRLFALTTKGTPAHSAVSYQAGDYLLFGPETRGLPATILDNLPAQQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMLASSRSMNLSNAVSVVVYEAWRQL 148 >gi|212640174|ref|YP_002316694.1| putative rRNA methylase (SpoU class) [Anoxybacillus flavithermus WK1] gi|212561654|gb|ACJ34709.1| Predicted rRNA methylase (SpoU class) [Anoxybacillus flavithermus WK1] Length = 160 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 2/155 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 ++N L +VL P N G I R+ A + ++ +L ++ +++ Sbjct: 1 MKNVALHVVLYQPEIPANTGNIARTCAATGTSLHLIRPLGFSTDDKMLKRAGLDYWDYVD 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQET 247 +L + K F I + K + G E GL E Sbjct: 61 VHYYDSLQELFDKYKEGEFFFITKFGKTYYTSFDYSDQTKDYFFVFGRETSGLPKDLIEN 120 Query: 248 -ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M +++LN+SN AA+ +Y Sbjct: 121 NMERCLRIPMNEYVRSLNLSNTAAILVYEALRQQN 155 >gi|159479268|ref|XP_001697715.1| hypothetical protein CHLREDRAFT_105431 [Chlamydomonas reinhardtii] gi|158274083|gb|EDO99867.1| predicted protein [Chlamydomonas reinhardtii] Length = 198 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 49/154 (31%), Gaps = 11/154 (7%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ V+ HNIG I+RSA AF + + A A H + Sbjct: 2 YIITHSVSKRHNIGTIVRSATAFGVKEVCLVGSRQFNTFGSHGSDAHVAFRHFDTLAKCV 61 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + I + + A +LG EG+G+ + ++ Sbjct: 62 QHLKEVEGCRVLGVEICEGALPVQEHP---FTGPTAFLLGNEGQGMTDRQMALCDGFVYI 118 Query: 255 HMPG-IIKALNVSNAAAVALYITQ-------NHF 280 G +LNV+ AA++ L+ Sbjct: 119 PQHGAGTASLNVAVAASIVLHHFAIWAAYPERQR 152 >gi|302346096|ref|YP_003814449.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC 25845] gi|302149891|gb|ADK96153.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC 25845] Length = 198 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 26/71 (36%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 ++ + + A++LG E KG++ + + + G +LNVS Sbjct: 125 QNPTNHQHPTPNTQHPSPHYAIVLGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTT 184 Query: 270 AVALYITQNHF 280 + ++ Sbjct: 185 GIVIWEFARQL 195 >gi|319424788|gb|ADV52862.1| RNA methyltransferase, TrmH family, group 2 [Shewanella putrefaciens 200] Length = 154 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R C + E L ++ + R Sbjct: 1 MFHIALYEPEIAPNTGNIIRLCANNGCQLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + L+ M +P + L+ G E +GL E+ Sbjct: 61 KDFDAFLEAMTGKRIMACTTKG--SRPHTELSFAKNDVLLFGPETRGLPMAIIESIPTEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ Y Sbjct: 119 RLRIPMAATSRSLNLSNAVAIISYEAWRQL 148 >gi|92115317|ref|YP_575245.1| RNA methyltransferase TrmH, group 2 [Chromohalobacter salexigens DSM 3043] gi|91798407|gb|ABE60546.1| RNA methyltransferase TrmH, group 2 [Chromohalobacter salexigens DSM 3043] Length = 164 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 48/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G ++R + + L ++ H Sbjct: 1 MLDIVLFEPEIPPNTGNLIRLCANTGFRLHLIEPLGFALDDKRLRRAGLDY--HEWARVK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + +S+ + + + AL+ G E +GL + Sbjct: 59 VHADWRAFLESVQPARVLAVSTRGRTGYHEVAYREGDALVFGPETRGLPQAMLDALPPAQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ ++ Sbjct: 119 RLRIPMLPDSRSLNLSNACAILVFEAWRQL 148 >gi|42528213|ref|NP_973311.1| RNA methyltransferase [Treponema denticola ATCC 35405] gi|41819483|gb|AAS13230.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405] Length = 255 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 94/244 (38%), Gaps = 14/244 (5%) Query: 44 SQPENLF-LYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPFPVKTVPPQT 100 + E + G + A + KI +L ++ + + + V Sbjct: 3 KKFEKELPVCGFESCLALAKHHPEKISRLFFSEKRAKQFGEVCKYLASNKRLYRIVSDDE 62 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSA 154 ++K+ + HQG+ P L+ +N + +++LD + + +N+GAI+RSA Sbjct: 63 LEKLS-ESVHHQGVTAMIFEPEIPVLEHEEINLWAQNKEHVLMLDEIGNANNLGAIIRSA 121 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F + I+ TK + A + I + T + IG Sbjct: 122 AFFGIENIVLTKEDKQASITTSAYRVAQGGMEFVKIFKVSSTAWFLRQCRGRLTCIGTDL 181 Query: 215 DSKKPLEQ----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + + K++ ++LG E +G+ + ++ + + G +++LNV+ AA Sbjct: 182 RAHHEIADLGRLIEKDEACVIVLGNEERGISEEAKKLCVHLIKIKGSGNVESLNVAQAAT 241 Query: 271 VALY 274 + + Sbjct: 242 LFCH 245 >gi|213962459|ref|ZP_03390721.1| SpoU protein [Capnocytophaga sputigena Capno] gi|213954785|gb|EEB66105.1| SpoU protein [Capnocytophaga sputigena Capno] Length = 220 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 1/149 (0%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + R + + ++ V HN A++R+ F + + + Sbjct: 23 EIIVQRTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEGRFGKRLDAKIAMGAQ-K 81 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + + L K A G E +GL + Sbjct: 82 WVDVFRYNDTQSCIDTLRTQGYQIVATTPHKNAYFLNDFDITKKSAFFFGTEKEGLSAQV 141 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273 A + + M G ++LN+S A A+ L Sbjct: 142 LSQADTFLKIPMVGFTESLNISVAVAIVL 170 >gi|62182189|ref|YP_218606.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616772|ref|YP_001590737.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549059|ref|ZP_02342818.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168241872|ref|ZP_02666804.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194451947|ref|YP_002047725.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|198243676|ref|YP_002217657.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205354702|ref|YP_002228503.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858932|ref|YP_002245583.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585496|ref|YP_002639295.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62129822|gb|AAX67525.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161366136|gb|ABX69904.1| hypothetical protein SPAB_04591 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194410251|gb|ACF70470.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197938192|gb|ACH75525.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274483|emb|CAR39516.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325796|gb|EDZ13635.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205338875|gb|EDZ25639.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|206710735|emb|CAR35096.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470024|gb|ACN47854.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322716677|gb|EFZ08248.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326625441|gb|EGE31786.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629841|gb|EGE36184.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 157 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFAAVQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + A + L++ D L+ G E +GL + Sbjct: 59 RHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPKEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|16766980|ref|NP_462595.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167994314|ref|ZP_02575406.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232538|ref|ZP_02657596.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235302|ref|ZP_02660360.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168260552|ref|ZP_02682525.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464999|ref|ZP_02698891.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818477|ref|ZP_02830477.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442768|ref|YP_002042944.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194471131|ref|ZP_03077115.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734332|ref|YP_002116632.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197261958|ref|ZP_03162032.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200387243|ref|ZP_03213855.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928821|ref|ZP_03220020.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238910270|ref|ZP_04654107.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16422261|gb|AAL22554.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194401431|gb|ACF61653.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194457495|gb|EDX46334.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709834|gb|ACF89055.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632281|gb|EDX50765.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197240213|gb|EDY22833.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291549|gb|EDY30901.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199604341|gb|EDZ02886.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322254|gb|EDZ07452.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205327781|gb|EDZ14545.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333200|gb|EDZ19964.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205344663|gb|EDZ31427.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350496|gb|EDZ37127.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261248843|emb|CBG26696.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995953|gb|ACY90838.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160231|emb|CBW19753.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914721|dbj|BAJ38695.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088113|emb|CBY97875.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226748|gb|EFX51798.1| tRNA cytosine34-2'-O--methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322612864|gb|EFY09816.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618929|gb|EFY15816.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625294|gb|EFY22121.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630039|gb|EFY26812.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634230|gb|EFY30965.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635869|gb|EFY32578.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643045|gb|EFY39621.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643828|gb|EFY40377.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649822|gb|EFY46245.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653028|gb|EFY49363.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661153|gb|EFY57381.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662358|gb|EFY58571.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667236|gb|EFY63402.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674387|gb|EFY70480.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678405|gb|EFY74466.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680911|gb|EFY76945.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687153|gb|EFY83126.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323132055|gb|ADX19485.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192113|gb|EFZ77346.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198204|gb|EFZ83311.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200824|gb|EFZ85894.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206578|gb|EFZ91536.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210509|gb|EFZ95395.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216203|gb|EGA00931.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220426|gb|EGA04880.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225289|gb|EGA09523.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228403|gb|EGA12534.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234224|gb|EGA18312.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237209|gb|EGA21276.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244728|gb|EGA28732.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249209|gb|EGA33127.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250920|gb|EGA34796.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256718|gb|EGA40446.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262256|gb|EGA45817.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264533|gb|EGA48037.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268823|gb|EGA52281.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332990544|gb|AEF09527.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 157 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFAAVQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + A + L++ D L+ G E +GL + Sbjct: 59 RHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPKEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|313471800|sp|B8CHC9|TRML_SHEPW RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL Length = 153 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R C + E L ++ + Sbjct: 1 MFHIALYEPEIAPNTGNIIRLIANNGCQLHLIEPLGFDLEDKKLRRAGLDYADLANVSHH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 N L+ M +P + L+ G E +GL ++ Sbjct: 61 KNFESFLKAMQGKRIMACTTKG--SRPHSELTFQQDDVLLFGPESRGLPADIIDSIPTEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ Y Sbjct: 119 RLRIPMMSTSRSLNLSNAVAIISYEAWRQL 148 >gi|283796619|ref|ZP_06345772.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1] gi|291076043|gb|EFE13407.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1] Length = 163 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268 ++ + + ++ G E +G+ + + + M G I++LN+SN+ Sbjct: 75 YMATTKAPNVYTEASYEPDCYIMFGPESRGIPEDILVKNQETCVRIPMWGDIRSLNLSNS 134 Query: 269 AAVALYITQNH 279 ++ LY Sbjct: 135 VSIILYEALRQ 145 >gi|145353351|ref|XP_001420979.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|145357416|ref|XP_001422915.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581215|gb|ABO99272.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144583159|gb|ABP01274.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 216 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 A++ G E +G+ + + ++ M G ++LN+S AAA+ + Sbjct: 133 HYDWTVPTAVVFGNEREGVSDEARALRDGAVYIPMFGFTESLNISVAAALVMSHA 187 >gi|262091708|gb|ACY25298.1| rRNA methylase [uncultured actinobacterium] Length = 218 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 86/225 (38%), Gaps = 12/225 (5%) Query: 56 TVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115 ++ A++ KI + L A L + ++++ +A Sbjct: 2 LIAEAISAGW-KIEEQFIAPGGL------AVLGTDARTFDLENGVMERVASTTTPQPVIA 54 Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 A S L AV+ + +++ D ++DP N+G ILRSA A ++ T + + Sbjct: 55 --IAERRSSGLAAVKGAHWVVIADRISDPGNLGTILRSAEAAGVSAVVLTPGTVEAFNPK 112 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + ++++GA+ H+P I ++ + + KIAL++G Sbjct: 113 VVRASAGAMFHVPIIEDVSVEEIRDNGFKVFGTSSHEQQG-SIDFTTADLTGKIALLVGN 171 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E GL + + + G ++LNV+ A + + Sbjct: 172 EAHGLDDNV--SVDAWLTIPHRGRSESLNVAMACTLVCFEAARQR 214 >gi|89900467|ref|YP_522938.1| tRNA/rRNA methyltransferase SpoU [Rhodoferax ferrireducens T118] gi|89345204|gb|ABD69407.1| tRNA/rRNA methyltransferase (SpoU) [Rhodoferax ferrireducens T118] Length = 161 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R + C + + + ++ E+ R Sbjct: 1 MFHIVLVEPEIPPNTGNIIRLSANTGCALHLIEPLGFSMDDKHMRRAGLDYHEYATVKRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250 ++ L + L++ + + + + L+ G+E KGL +++ T Sbjct: 61 ASWQAFLAGEQPAPERMFALTTRAGRSVYEAQFAPGDWLVFGSETKGLSDAVRQSFTLAQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 121 SLKLPMIEGQRSLNLSNAVAVTVFEAWRQ 149 >gi|291561907|emb|CBL40712.1| Predicted rRNA methylase (SpoU class) [butyrate-producing bacterium SS3/4] Length = 164 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268 ++ + + + ++ G E +G+ + E + + M G I++LN+SN+ Sbjct: 75 YMATTKGEHVYTDVPYDPDVYIMFGPESRGIPEEILVENRENCIRIPMWGDIRSLNLSNS 134 Query: 269 AAVALYITQNH 279 A+ LY Sbjct: 135 VAIVLYEALRQ 145 >gi|301631473|ref|XP_002944820.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase yibK-like [Xenopus (Silurana) tropicalis] Length = 158 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R A C + E +L ++ E R Sbjct: 1 MFHIVLVEPEIPPNTGNIIRLAANTGCALHLIEPLGFSMEDRLLRRAGLDYHESARVQRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 ++ ++ + + +++ +P+ L+ GAE +GL P +E + Sbjct: 61 ADWPSFMRTARPDPARMLAMTTHGAQPVHATAFRPGDWLVFGAETRGLTPALRETFAPSQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 121 RLRLPMVPGQRSLNLSNAVAVTVFEAWRQ 149 >gi|23502412|ref|NP_698539.1| RNA methyltransferase [Brucella suis 1330] gi|62290431|ref|YP_222224.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941] gi|82700354|ref|YP_414928.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar Abortus 2308] gi|148559238|ref|YP_001259422.1| RNA methyltransferase [Brucella ovis ATCC 25840] gi|161619491|ref|YP_001593378.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365] gi|163843802|ref|YP_001628206.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445] gi|189024660|ref|YP_001935428.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] gi|225853026|ref|YP_002733259.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457] gi|254689732|ref|ZP_05152986.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 6 str. 870] gi|254694221|ref|ZP_05156049.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 3 str. Tulya] gi|254697876|ref|ZP_05159704.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 2 str. 86/8/59] gi|254704799|ref|ZP_05166627.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 3 str. 686] gi|254708213|ref|ZP_05170041.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis M163/99/10] gi|254710583|ref|ZP_05172394.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis B2/94] gi|254730767|ref|ZP_05189345.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 4 str. 292] gi|256032077|ref|ZP_05445691.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis M292/94/1] gi|256045169|ref|ZP_05448068.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 1 str. Rev.1] gi|256114120|ref|ZP_05454874.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 3 str. Ether] gi|256160273|ref|ZP_05457967.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M490/95/1] gi|256255478|ref|ZP_05461014.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti B1/94] gi|256257985|ref|ZP_05463521.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 9 str. C68] gi|256369962|ref|YP_003107473.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915] gi|260169212|ref|ZP_05756023.1| RNA methyltransferase, TrmH family protein [Brucella sp. F5/99] gi|260546966|ref|ZP_05822705.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] gi|260565232|ref|ZP_05835716.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260565958|ref|ZP_05836428.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|260755264|ref|ZP_05867612.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260758485|ref|ZP_05870833.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260762310|ref|ZP_05874653.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|261214528|ref|ZP_05928809.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|294852864|ref|ZP_06793537.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] gi|297248817|ref|ZP_06932535.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 5 str. B3196] gi|23348399|gb|AAN30454.1| RNA methyltransferase, TrmH family [Brucella suis 1330] gi|62196563|gb|AAX74863.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str. 9-941] gi|82616455|emb|CAJ11518.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar Abortus 2308] gi|148370495|gb|ABQ60474.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840] gi|161336302|gb|ABX62607.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365] gi|163674525|gb|ABY38636.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445] gi|189020232|gb|ACD72954.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] gi|225641391|gb|ACO01305.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457] gi|256000125|gb|ACU48524.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915] gi|260096016|gb|EEW79893.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] gi|260151300|gb|EEW86394.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260155476|gb|EEW90556.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|260668803|gb|EEX55743.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260672742|gb|EEX59563.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260675372|gb|EEX62193.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260916135|gb|EEX82996.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|294821453|gb|EFG38452.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] gi|297175986|gb|EFH35333.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 5 str. B3196] gi|326409566|gb|ADZ66631.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis M28] gi|326539270|gb|ADZ87485.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M5-90] Length = 159 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 1/152 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +L + L + P N G ILR A + L ++ LE R Sbjct: 1 MELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTR 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + G + + LS+ + P + L+ G E G+ + A Sbjct: 61 HPDWNRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADER 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282 + M ++LN++ + A+ +K Sbjct: 121 LLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 152 >gi|91228462|ref|ZP_01262386.1| rRNA methylase, SpoU family protein [Vibrio alginolyticus 12G01] gi|262392990|ref|YP_003284844.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. Ex25] gi|91187997|gb|EAS74305.1| rRNA methylase, SpoU family protein [Vibrio alginolyticus 12G01] gi|262336584|gb|ACY50379.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. Ex25] Length = 159 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 5/149 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L N G I+R + + E + ++ + R N Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKNY 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 L+ + L + + K L+ G E +GL + ++ Sbjct: 64 QAFLEYLEKEKQGNYRLFACTTKTTGHHVDAQYQAGDVLMFGPETRGLPAEIIDSLPMEQ 123 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 RIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152 >gi|224373275|ref|YP_002607647.1| RNA methyltransferase, TrmH family, group 2 [Nautilia profundicola AmH] gi|223589470|gb|ACM93206.1| RNA methyltransferase, TrmH family, group 2 [Nautilia profundicola AmH] Length = 152 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 47/151 (31%), Gaps = 3/151 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL + P N G I R V I + ++ + + Sbjct: 1 MFNIVLFNPQIPPNTGNIGRLCVNAGAKLHIVKPIGFDISEKAVKRAGLDYWDKLDLTVW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 + + L+ + + +D +I G+E KG+ + + Sbjct: 61 ESTDEFLKHVDTSRCFFATTKTDKPYFE--VEYKPGDYIIFGSETKGIDENILRQNFDNC 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M ++LN++ + + LY K Sbjct: 119 ITIPMTKEGRSLNLAVSTGIILYEAIRQNFK 149 >gi|295395745|ref|ZP_06805934.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294971406|gb|EFG47292.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 155 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 2/98 (2%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 H + T + I ++ + + L+ G E GL + Sbjct: 52 YHDLAHVTVHPTIEHLWEELGHKRVIAFTTHTTHTFDTVEYTSDDVLLFGKESTGLPAEV 111 Query: 245 QE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E + M ++LN++N+A++A Y Sbjct: 112 AEDPHVDLAVRIPMLEGRRSLNLANSASIATYEAWRQL 149 >gi|317153031|ref|YP_004121079.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio aespoeensis Aspo-2] gi|316943282|gb|ADU62333.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio aespoeensis Aspo-2] Length = 150 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 2/144 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R A + + L ++ H+ + Sbjct: 3 IVLYQPEIPPNTGNIARLCAATRTPLHLIEPLGFTIDDKHLRRAGLDYWPHVDVTVHPDF 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 D L ++ + + A+++G E +GL + Sbjct: 63 DDFLTRVSPARLVLASTRATAPHHR--FAFRPDDAIVMGPETRGLPADMLARYPDGVRIP 120 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 + G +++LN+S A V L+ Sbjct: 121 IWGEVRSLNLSTATGVLLFEALRQ 144 >gi|167561403|ref|ZP_02354319.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia oklahomensis EO147] Length = 156 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A + ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + ++ + GAE +GL P+ E Sbjct: 61 RDWDAFIAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPELVERFPPEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149 >gi|242243076|ref|ZP_04797521.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis W23144] gi|242233424|gb|EES35736.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis W23144] Length = 156 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 1/149 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + +E +L ++ EH+ Sbjct: 1 MTNHIVLYQPEIPANTGNIARTCAGTLTHLHLIKPLGFSTEDKMLKRAGLDYWEHVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 ++ + + + N+ I G E GL +E A + Sbjct: 61 HDSIEEFFANTEGHYYLLTKFGKQTYSDFNFSNTNEDYYFIFGKETTGLPDWVKEKYAKT 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN AA+ +Y Sbjct: 121 ALRIPMSDNIRSLNLSNTAALLIYEALRQ 149 >gi|126439427|ref|YP_001057538.1| RNA methyltransferase [Burkholderia pseudomallei 668] gi|237810689|ref|YP_002895140.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei MSHR346] gi|126218920|gb|ABN82426.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 668] gi|237504756|gb|ACQ97074.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei MSHR346] Length = 179 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 46/162 (28%), Gaps = 2/162 (1%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 S +VL P N G ++R + P + A + ++ Sbjct: 11 HTHSHAFHRSNRIMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRA 70 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 E+ + + + ++ + GAE +G Sbjct: 71 GLDYHEYAQMRVHRDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRG 130 Query: 240 LRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L P + L M ++LN+SN AV ++ Sbjct: 131 LAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 172 >gi|109897315|ref|YP_660570.1| RNA methyltransferase [Pseudoalteromonas atlantica T6c] gi|109699596|gb|ABG39516.1| RNA methyltransferase, TrmH family, group 2 [Pseudoalteromonas atlantica T6c] Length = 154 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + + ++ H + Sbjct: 1 MLDIVLYQPEIPPNTGNIIRLCANTGFALHLIEPLGFEWDDKRVRRAGLDY--HEFANVV 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + ++ + AL+ G E +GL ++ Sbjct: 59 RHASLQAYMESRQPKRIFACTTKGTTFFAKAEYQLGDALLFGPETRGLPDDVIQSLPPEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 RVRIPMLPDSRSMNLSNAVSVFVYEAWRQL 148 >gi|166031366|ref|ZP_02234195.1| hypothetical protein DORFOR_01055 [Dorea formicigenerans ATCC 27755] gi|166028771|gb|EDR47528.1| hypothetical protein DORFOR_01055 [Dorea formicigenerans ATCC 27755] Length = 170 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Query: 225 KNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ G E G+ + + + M G I++LN+SN+ ++ LY Sbjct: 91 YEPDCYIMFGKESAGIPEEILVQHQEDCVRIPMVGDIRSLNLSNSVSIVLYEALRQ 146 >gi|138897021|ref|YP_001127474.1| rRNA methylase SpoU [Geobacillus thermodenitrificans NG80-2] gi|196249846|ref|ZP_03148542.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16] gi|134268534|gb|ABO68729.1| rRNA methylase SpoU [Geobacillus thermodenitrificans NG80-2] gi|196210722|gb|EDY05485.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16] Length = 245 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 5/161 (3%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + R + ++++ V+DPHN A+LR+A AF + +P L + Sbjct: 43 MYDVLNERTRYITVLMEAVDDPHNQAAVLRTAEAFGIQDVHVVTGRAPFSPNRLVTRYAD 102 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + + K + L + E + + L+ G E G+ Sbjct: 103 QWLTLHRQPDIKTAISDLKQQGYQVYASYLGEGTIPLSEVNV-SKPTVLLFGNEHSGVSE 161 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYI----TQNH 279 + A + M G +++ N+S AAA+ LY + Sbjct: 162 EALRLADGTFVIPMYGFVQSFNISVAAALTLYDVTERARRQ 202 >gi|307944162|ref|ZP_07659503.1| tRNA/rRNA methyltransferase [Roseibium sp. TrichSKD4] gi|307772508|gb|EFO31728.1| tRNA/rRNA methyltransferase [Roseibium sp. TrichSKD4] Length = 159 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 54/147 (36%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L + P N G ++R A D + P ++ L ++ LE IR Sbjct: 1 MPHLALYQPDIPQNTGTMVRMAACLGVDVHLIEPAGFPISNSALKRAGMDYLERARLIRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 N S + + L++ S I D L+LG E G+ E + Sbjct: 61 LNFDTFDNWRQSENRRLLLLTTKSSDSYTNFIFKDSDILLLGRESSGVPETVHEGVDARL 120 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++++NV+ +A + L Sbjct: 121 TIPMAEGLRSINVAISAGMVLGEALRQ 147 >gi|322494359|emb|CBZ29660.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 2035 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 65/175 (37%), Gaps = 2/175 (1%) Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 ++ V E L P + +++V + +P NI + R F+ + I+ + Sbjct: 1851 QKKVSSWWTSEVYNELHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAIESIVVPE 1910 Query: 167 RYSPSESAVLA--KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + +A +SA + + + + PLEQ Sbjct: 1911 KKVFEHPHFVAAARSAELWIPWEEVVPKDLPYYLEGLRRRGYVVVGIEQTAASVPLEQFS 1970 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ A++LGAEG+G+ + G+I++LNV A A+ +Y Sbjct: 1971 FPERCAVVLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQ 2025 >gi|317488202|ref|ZP_07946773.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA] gi|316912707|gb|EFV34245.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA] Length = 156 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P N G I R+ + LA++ + + +R Sbjct: 5 LNIVLVEPEIPQNTGNIARTCACTGARLHLVEPMGFRLTQKNLARAGCDYWDEVDIVRWP 64 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252 + + + + L+ G E +GL E A Sbjct: 65 CAEAFFEAHAADELHLFTGQACRGFGD--VAYGEGSFLVFGRESRGLPLGLIEAYANRCV 122 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+SNA AVA Y Sbjct: 123 RIPMREGLRSLNLSNAVAVAAYEALRQ 149 >gi|218887307|ref|YP_002436628.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758261|gb|ACL09160.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 344 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 2/65 (3%) Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA--LY 274 + E L+LG E G+RP + + M +LNV+ A A+ + Sbjct: 278 PRNPFTEPLRTPAVLVLGNEDSGIRPNVAKRCHFTLSIPMARDFDSLNVAQAGAILVGCF 337 Query: 275 ITQNH 279 + Sbjct: 338 AARRQ 342 >gi|86605765|ref|YP_474528.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab] gi|86554307|gb|ABC99265.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp. JA-3-3Ab] Length = 151 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 3/148 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + L ++ EH+ R Sbjct: 1 MPFHVVLVAPEIPANTGNIARTCAATRTPLHLVDPLGFRLSDRYLRRAGLDYWEHVQLHR 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + +Q F + + L+ G+E +GL P ET Sbjct: 61 YPSWSALVQAHPEARFWCFSVRGKALYTE--VAYQPGDWLVFGSESRGLDPMFLET-YPS 117 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + + G +++LN+SNA A+AL+ Sbjct: 118 VRIPLSGPVRSLNLSNAVAIALFEALRQ 145 >gi|322501925|emb|CBZ37008.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 2045 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 65/175 (37%), Gaps = 2/175 (1%) Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 ++ V E L P + +++V + +P NI + R F+ + ++ + Sbjct: 1861 QKKVSSWWTSEVYNELHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAIESLVVPE 1920 Query: 167 RYSPSESAVLA--KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + +A +SA + + + + PLEQ Sbjct: 1921 KKVFEHPHFVAAARSAELWIPWEEVMPKDLPGYLEGLRRRGYVVVGIEQTAASVPLEQFS 1980 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ A++LGAEG+G+ + G+I++LNV A A+ +Y Sbjct: 1981 FPERCAVVLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQ 2035 >gi|317138163|ref|XP_001816718.2| hypothetical protein AOR_1_376184 [Aspergillus oryzae RIB40] Length = 351 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 61/307 (19%), Positives = 103/307 (33%), Gaps = 77/307 (25%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTV 96 + + +YG V AAL R +++L + + L L VK Sbjct: 27 QREYQKF-IYGTSAVEAALRCSRRHMYKLYVYQASGEELSSAKVALRKLALSKNVKVKMA 85 Query: 97 P--PQTIDKIVGKEAVHQGLALETAPLLS------------------------------- 123 + + H G LE +PL Sbjct: 86 FGGWDRLLDKMSAGRPHNGCVLEASPLPRLPVRGLKSVPSIKEEDFGVELGAQSREEALV 145 Query: 124 ---------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 D ++++LD + DP N+GAI+RSA D II R S S Sbjct: 146 NSTNDKLKIHHWDQRTRYPVVLLLDGIVDPGNLGAIIRSAYYLGVDAIIFAGRNSAPLSP 205 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE------------- 221 V K+++GA E++ + +SN D +Q+ + G++ + Sbjct: 206 VTIKASAGAAENMTLLEVSNEVDFIQRSKANGWKFYAADAPGPASKYVDTASIVEGKGTT 265 Query: 222 ---QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM------------PGIIKALNVS 266 +++G+EG GL + A S+ + P + +LNVS Sbjct: 266 EGEHVSTQSPCVIMMGSEGSGLSRHIKSHADSIVSIPGARLATPLGVESDPSRVDSLNVS 325 Query: 267 NAAAVAL 273 AAA+ + Sbjct: 326 VAAALLM 332 >gi|222054953|ref|YP_002537315.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. FRC-32] gi|221564242|gb|ACM20214.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. FRC-32] Length = 158 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 K + I S K + ++ G E KGL Sbjct: 56 YWSEVEIHYWPDLDTLKAAYPNGRFIYTSKKVAKTYVELEFRCGDFIVFGKETKGLPEDL 115 Query: 245 QETATSM-AHLHMPGIIKALNVSNAAAVALYITQNH 279 E + + + G +++LN+S +A + LY Sbjct: 116 IEANPATSVRIPIFGKVRSLNLSTSAGIVLYEALRQ 151 >gi|220905403|ref|YP_002480715.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869702|gb|ACL50037.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 160 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALYIT 276 + L+ G E +GL + E + + M G ++++N+S AA + LY Sbjct: 93 HHFAFDPDDFLVFGPETRGLPQEILELSPHRVRIPMLEGRVRSINLSTAAGIVLYAA 149 >gi|77456565|ref|YP_346070.1| RNA methyltransferase TrmH, group 2 [Pseudomonas fluorescens Pf0-1] gi|77380568|gb|ABA72081.1| putative RNA-methyl transferase [Pseudomonas fluorescens Pf0-1] Length = 151 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G ++R C + + L ++ E+ R Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 ++L L+ + ++ +P A I G E +GL P+ + Sbjct: 61 ADLASCLES--LGHPRLFAFTTKGSRPFHDAAFVPGDAFIFGPESRGLPPEVLDALPGEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AVA+Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|148560365|ref|YP_001259457.1| RNA methyltransferase [Brucella ovis ATCC 25840] gi|148371622|gb|ABQ61601.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840] Length = 226 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 7/216 (3%) Query: 63 NPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 + + LL +N L L LP PV +VP +D + G VH+G+ Sbjct: 6 SARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRK 64 Query: 122 LSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 P L + L++VL +++ N+G+I R+A AF D ++ + Sbjct: 65 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAI 124 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 + + GA +PY + D + GF + L+ + + + + ++ AL+LG EG Sbjct: 125 RVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEG 184 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +GL + E A + M +LNV+ A+ +AL Sbjct: 185 EGLPSRFLERL-ETARIPMSKTFDSLNVATASGIAL 219 >gi|145349369|ref|XP_001419108.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579339|gb|ABO97401.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 306 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 45/260 (17%), Positives = 82/260 (31%), Gaps = 17/260 (6%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-NNP-SRKIFQLLATKNALARLDW 83 + K + + + + L + R+ L A A Sbjct: 44 ENATVKHFVKLCKSKAYRDERGTVVLSSSVLMRECFGRAGEGREAKTLFVADWAEAPAGI 103 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAV-------HQGLALETAPLLSPTLDAVRNSQLLM 136 A V P + K G + R+ ++ Sbjct: 104 RAKR-----VIRAPASVLKKCAGVNNADGLDAVGEFASPVIMNAREFVDGAKQRDVVRVL 158 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 ++ V DP N+G + R+AVAF D + + ++A GA + ++ + Sbjct: 159 AVEGVQDPGNLGTLTRTAVAFGWDTVALLPGTCDPFNDKAMRAARGATFRVDFVAFDSFD 218 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHL 254 D + +K+ ++ E K L+LG EG+GL + Sbjct: 219 DLASAGRELNMELYAAEPSAKEDVDPERAKAVAKACLVLGTEGQGLSDDALRAC-KPVAI 277 Query: 255 HMPGIIKALNVSNAAAVALY 274 M G +++LNV A V +Y Sbjct: 278 PMSGEMESLNVGIAGGVLMY 297 >gi|27468455|ref|NP_765092.1| putative rRNA methylase [Staphylococcus epidermidis ATCC 12228] gi|57867280|ref|YP_188960.1| RNA methyltransferase [Staphylococcus epidermidis RP62A] gi|282875762|ref|ZP_06284629.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus epidermidis SK135] gi|293366167|ref|ZP_06612853.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|27316002|gb|AAO05136.1|AE016749_82 putative rRNA methylase [Staphylococcus epidermidis ATCC 12228] gi|57637938|gb|AAW54726.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus epidermidis RP62A] gi|281294787|gb|EFA87314.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus epidermidis SK135] gi|291319689|gb|EFE60049.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|329724859|gb|EGG61362.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus epidermidis VCU144] gi|329734296|gb|EGG70611.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus epidermidis VCU045] gi|329737347|gb|EGG73601.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus epidermidis VCU028] Length = 156 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 1/149 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + +E +L ++ EH+ Sbjct: 1 MTNHIVLYQPEIPANTGNIARTCAGTLTHLHLIKPLGFSTEDKMLKRAGLDYWEHVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 ++ + + + N+ I G E GL +E A + Sbjct: 61 HDSIEEFFANTEGHYYLLTKFGKQTYSDFNFSNTNEDYYFIFGKETTGLPEWVKEKYAKT 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN AA+ +Y Sbjct: 121 ALRIPMSDNIRSLNLSNTAALLIYEALRQ 149 >gi|51594425|ref|YP_068616.1| methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|186893412|ref|YP_001870524.1| RNA methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|51587707|emb|CAH19307.1| putative methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|186696438|gb|ACC87067.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pseudotuberculosis PB1/+] Length = 162 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 45/153 (29%), Gaps = 5/153 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R C + + L ++ E Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHH 60 Query: 193 SNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-- 247 + L Q L + L+ G E +GL + Sbjct: 61 HDYQAFLDSEKLDSTQLARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALP 120 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M +++N+SNA +V +Y Sbjct: 121 AQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 153 >gi|163852857|ref|YP_001640900.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens PA1] gi|163664462|gb|ABY31829.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens PA1] Length = 269 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 75/240 (31%), Gaps = 6/240 (2%) Query: 45 QPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + + G T+ + + +L D PV + Sbjct: 29 RQGRFIVEGEVTLRLLFSGSARFAAESVLLAPERWPGFA-DLLRGDGPPVYLAGKDVMSA 87 Query: 104 IVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + G V P + L++ L + + N+G + R+A AF D Sbjct: 88 VAGFPIHRGVLAVGLRGAEPPPESLIPPAPAPALVVGLVGLTNHDNVGGLFRNAAAFGAD 147 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 + + ++GA +P+ R + L + L+ + L Sbjct: 148 AVWLDAETCDPLYRKAIRVSAGAALTVPFARAPSGAALLDLAERHALTPLALTPGGSETL 207 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + L+LG EG GL A + M +LNV+ A A+AL+ Sbjct: 208 DALEPPARALLLLGTEGPGLPESLMARA-RRVRIAMAPGFDSLNVATAGAIALHHLARLR 266 >gi|114706914|ref|ZP_01439813.1| hypothetical protein FP2506_02644 [Fulvimarina pelagi HTCC2506] gi|114537464|gb|EAU40589.1| hypothetical protein FP2506_02644 [Fulvimarina pelagi HTCC2506] Length = 282 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 92/242 (38%), Gaps = 11/242 (4%) Query: 41 RHTSQPEN--LFLYGVHTVSA--ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96 R G V AL+ R L+ + D ++LP P+ Sbjct: 31 RERDLTGRHGFIAEGT-VVLDQLALSERFRPSSVLVLRNRLSSIADRLSHLPADCPIYVS 89 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAIL 151 ID+I G LA ++ +A+ +++ + + NIGA+ Sbjct: 90 ERAVIDQIAGFPMHRGVLAHGIDTQPERSVTEVLDNAMAGYGPVLIAIGIANHDNIGALF 149 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A AF G++ + + G + + R N D + + G++ I Sbjct: 150 RNARAFGVGGVLLDDTSCNPLYRKALRVSVGTVLTADWCRSGNADDLIAAAEAAGYRPIA 209 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 L+ + L+ +++AL++GAEG GL + + M + +LNV+ AA+ Sbjct: 210 LTPKGEHSLDDLEPTERLALVVGAEGPGLPENILDRLHG-LRIAMESDVDSLNVATTAAI 268 Query: 272 AL 273 L Sbjct: 269 VL 270 >gi|154495837|ref|ZP_02034533.1| hypothetical protein BACCAP_00117 [Bacteroides capillosus ATCC 29799] gi|150275035|gb|EDN02083.1| hypothetical protein BACCAP_00117 [Bacteroides capillosus ATCC 29799] Length = 163 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 3/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I R+ A + + ++ + Sbjct: 1 MLNLVLVEPEIPQNTGNIARTCAATRSRLHLIKPLGFDISDRAVKRAGLDYWHMVDLTVY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSM 251 NL D + + + + D+ L G E GL + +E Sbjct: 61 ENLEDFFARTGAKDLWLMTTKAPRSYAE--AEFRDECWLFFGKETAGLPREFREAHRDRC 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN++N+ A+ Y Sbjct: 119 IRIPMRPDARSLNLANSVAIVTYEALRQL 147 >gi|52079368|ref|YP_078159.1| rRNA methylase-like protein [Bacillus licheniformis ATCC 14580] gi|52784729|ref|YP_090558.1| hypothetical protein BLi00957 [Bacillus licheniformis ATCC 14580] gi|319646849|ref|ZP_08001078.1| CspR protein [Bacillus sp. BT1B_CT2] gi|52002579|gb|AAU22521.1| rRNA methylase homolog [Bacillus licheniformis ATCC 14580] gi|52347231|gb|AAU39865.1| CspR [Bacillus licheniformis ATCC 14580] gi|317391437|gb|EFV72235.1| CspR protein [Bacillus sp. BT1B_CT2] Length = 157 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + ++ +L ++ E + + Sbjct: 1 MALHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQET-AT 249 +L + F I + +N+ + G E GL + E Sbjct: 61 HDSLDELFDAHPEGRFFFITKFGQKPHTSFDYSDQNEDYFFVFGRETNGLPKELIEQNMD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 L M +++LN+SN AA+ +Y Sbjct: 121 RCLRLPMTEHVRSLNLSNTAAILVYEALRQQN 152 >gi|323698127|ref|ZP_08110039.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. ND132] gi|323458059|gb|EGB13924.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio desulfuricans ND132] Length = 153 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + A++LG E +GL + E +M + + G +++LN+S A + L+ Sbjct: 85 HHRFAFRADDAIVLGPETRGLPMELME-GHAMVRIPIWGEVRSLNLSTATGILLFEALRQ 143 >gi|241890130|ref|ZP_04777428.1| RNA methyltransferase, TrmH family, group 2 [Gemella haemolysans ATCC 10379] gi|241863752|gb|EER68136.1| RNA methyltransferase, TrmH family, group 2 [Gemella haemolysans ATCC 10379] Length = 157 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 5/152 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ V + + + + ++ EH+ + + Sbjct: 4 IVLFQPEIPANTGNIARTCVGTNTRLHLIRPLGFSIDDKHVKRAGLDYWEHLDLVVWDSF 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQE-TATSMA 252 + L+ + + I D I I G E KGL + +E + Sbjct: 64 DEFLEATNDKHYYLITKFGTKNYCDFDFSNTDNEDIYFIFGRETKGLPKEFREKYSEQAL 123 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH--FAK 282 + M +++LN+SN AA+ +Y F K Sbjct: 124 RIPMSENVRSLNLSNTAALIIYEALRQQNFNK 155 >gi|269120218|ref|YP_003308395.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC 33386] gi|268614096|gb|ACZ08464.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC 33386] Length = 153 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 35/96 (36%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + + ++ +++ + + ++ G E +G+ + Sbjct: 50 YWKDVKLTVWDSLTELMESNKNAKFYFATTKTRQKYTDPVYREDDYIVFGPESRGVPEEI 109 Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E + + M ++LN+SN+AA+ LY Sbjct: 110 LLENKENCITIPMLPKGRSLNLSNSAAIILYEALRQ 145 >gi|237747425|ref|ZP_04577905.1| RNA methyltransferase TrmH [Oxalobacter formigenes HOxBLS] gi|229378776|gb|EEO28867.1| RNA methyltransferase TrmH [Oxalobacter formigenes HOxBLS] Length = 156 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R + P + A + ++ E Sbjct: 1 MFHVVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDDAKMRRAGLDYHEFAKIKVY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 S+ +D LQKM + L++ + + + G+E KGL + Sbjct: 61 SSWSDFLQKMSPDPSRMFALTTHGSPCFSKTSFHAGDLFVFGSETKGLSLEIHRFFPEGH 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN+ A+ +Y Sbjct: 121 QIRLPMRPHNRSLNLSNSVAIVVYEAWRQ 149 >gi|255085776|ref|XP_002505319.1| predicted protein [Micromonas sp. RCC299] gi|226520588|gb|ACO66577.1| predicted protein [Micromonas sp. RCC299] Length = 513 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 55/315 (17%), Positives = 108/315 (34%), Gaps = 60/315 (19%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 + H K + R + + ++ R + ++G + V A L R+ Sbjct: 197 RTRWQTRHDEK--KAARHARGDLTLAERVRGEA------VFGRNPVLAMLAARRREEISA 248 Query: 72 LATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA--VHQGLALETAPLLSPT 125 + + + R A + ++ +VG + H G+ + +PL Sbjct: 249 VWIQEGSDASRDRALLKAVQARGITPEYASKHDLNMLVGGDGRRPHNGVVADASPLTPTP 308 Query: 126 LD--------------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +D + + + LD + DP N+GA+LRSA Sbjct: 309 IDSLPLPAEWATDRAGDGSGSSVDDNQSRPSDPPVWLALDEIVDPQNLGAMLRSAHFLGV 368 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G++ + S S V++K++SGALE + + + LQ+ G+ G + Sbjct: 369 AGVVVCAKNSAPLSPVVSKASSGALERMDVRSVGVMPRFLQRCVEEGWDVFGADNAPDAE 428 Query: 220 LEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHL-------------------HMPGI 259 + +++G EG GLR + + + Sbjct: 429 DVTAVSVARPSVVVVGNEGAGLRTNVRRACNRVVRIEGGGGAERGVGEAGVGEGSEGGDT 488 Query: 260 IKALNVSNAAAVALY 274 + +LNVS A + L+ Sbjct: 489 VDSLNVSVATGILLH 503 >gi|238061560|ref|ZP_04606269.1| rRNA methyltransferase [Micromonospora sp. ATCC 39149] gi|237883371|gb|EEP72199.1| rRNA methyltransferase [Micromonospora sp. ATCC 39149] Length = 299 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 92/259 (35%), Gaps = 4/259 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R+ +++ + S S + + + + I + L Sbjct: 9 ERSDPAVQRIIDVTKHS--RSVVRTVLIEDAEPLVEGIRAGLEFIEVYGVETSPLPGEVL 66 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 A PV+ V ++ + + + + P + R + ++VLD V Sbjct: 67 AACQQRDIPVRLVGSPIMNDLFKTDKKPKAFGIARVPRPWSFDELARTTGDIIVLDGVKI 126 Query: 144 PHNIGAILRS-AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 NIGAI+R+ + ++ + L +++ G + +P + S Sbjct: 127 VGNIGAIVRTSFALGAAGIVLVDSDLATIADRRLVRASRGYVFSLPIVLASRADAIAHFR 186 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + + E ++++AL+LG+E G + A+ + + ++ Sbjct: 187 RTGIPLVAFDTEGDLAVSELRDADEQLALLLGSEKTGTSRSFESIASHSVSIPINPAAES 246 Query: 263 LNVSNAAAVALYITQNHFA 281 LNVS A +ALY + H+ Sbjct: 247 LNVSVCAGIALYE-RRHWN 264 >gi|213421680|ref|ZP_03354746.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 156 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFAAVQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + A + L++ D L+ G E +GL + Sbjct: 59 RHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPKEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|86739559|ref|YP_479959.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3] gi|86566421|gb|ABD10230.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3] Length = 316 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 53/272 (19%), Positives = 93/272 (34%), Gaps = 29/272 (10%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + R G ++ AL R +L + LA + D + Sbjct: 43 DYISLTDVALRRRREPADGLFIAEGERVITRALRAGYRP-RSVLVSPARLAAVPADLGV- 100 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV P + I G E LA D + +++ ++V + + N+G Sbjct: 101 -DVPVYVAGPDVLAAITGFEVHRGALAAMGRQPPRAAADLLVDARRVLVCEDIVSHTNLG 159 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD----------- 197 AI RSA D ++ + R + + + G + +PY R+ + Sbjct: 160 AIFRSAAGLGMDAVLLSPRCADPLYRRSVRVSMGEVFAVPYARLEPWPEALGLLRDAGFT 219 Query: 198 ---------------ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + + + ++AL+LG EG GL Sbjct: 220 LLALTPAADAEDLGSFAAGLTPRAAPALAPAPAPAPAPAPVPAAARVALLLGTEGAGLSA 279 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q AT+ + M + +LNV+ AA+A Y Sbjct: 280 AAQAAATARVRIPMAHGVDSLNVAATAAIACY 311 >gi|90021648|ref|YP_527475.1| tRNA (guanosine-2'-O-)-methyltransferase [Saccharophagus degradans 2-40] gi|89951248|gb|ABD81263.1| tRNA (guanosine-2'-O-)-methyltransferase [Saccharophagus degradans 2-40] Length = 224 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L ++ + V N+ AI+R+ A + + ++ +AS Sbjct: 15 QRQPDLTVITEEVQKGRNLSAIIRTCDAVGIPEVHSVV-PREGFTSYNGTAASAHKWVDI 73 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + L + K + AL++GAE G+ +E Sbjct: 74 HHYSTALEPITALTQQGYQIVAAHVDRNAKDFREIDYTKPTALLMGAEIWGVSEPARELV 133 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T HL M G+I++ NVS A A L Q Sbjct: 134 THTIHLPMVGMIESYNVSVACAGILLEAQRQR 165 >gi|16762614|ref|NP_458231.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144103|ref|NP_807445.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213022241|ref|ZP_03336688.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213052716|ref|ZP_03345594.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427159|ref|ZP_03359909.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582082|ref|ZP_03363908.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213647895|ref|ZP_03377948.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852189|ref|ZP_03381721.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289803688|ref|ZP_06534317.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289826010|ref|ZP_06545168.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25331702|pir||AG0975 probable RNA-methyltransferase STY4101 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504919|emb|CAD03299.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139740|gb|AAO71305.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 157 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFAAVQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + A + L++ D L+ G E +GL + Sbjct: 59 RHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPKEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|294506400|ref|YP_003570458.1| RNA methyltransferase [Salinibacter ruber M8] gi|294342728|emb|CBH23506.1| Putative RNA methyltransferase [Salinibacter ruber M8] Length = 262 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 6/213 (2%) Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPT 125 + ++ + V P T+ + E +A Sbjct: 47 VEVVVTPEGRGDPTVQALLEQLSVSVHETDPDTMTTLTDVETPQGVVAVAERRLRDPETV 106 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + + + ++VLD + DP N+G +LR+A F ++ + + ++ +G+ Sbjct: 107 PEQIGEAGTVLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPKVMRAGAGSHW 166 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +P R L ++ G G + + AL+LG+E GL Sbjct: 167 ALPLARTDAPGPFLDRLRRHGAALYGADLQGTRADAW-GPDRPSALVLGSEAHGLSAAVL 225 Query: 246 ETATSMAHLHMPGI---IKALNVSNAAAVALYI 275 + L ++LNV+ A + LY Sbjct: 226 DRLDLTVSLPGAPDRPAAESLNVAVAGGILLYE 258 >gi|255660253|ref|ZP_05405662.1| RNA methyltransferase [Mycoplasma genitalium G37] Length = 201 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 2/152 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + L++LD + DP+N GAILR+ +A DGII K + + K++ G++ + Sbjct: 50 NKKCSTLVMLDEIQDPYNFGAILRTCLASEVDGIIFKKNNQVPINNTVMKTSMGSVFYQN 109 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQE 246 ++++NL+ + K+ GF T+ + D K D K LI+G E +G+ + Sbjct: 110 LVQVANLSYTITKLKEIGFWTVVSTLDPIWKPIDYRKVDFAKKILIVGNEDRGVNQLITK 169 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A + M I +LNVS A + L+ +N Sbjct: 170 NADCRIKIPMNNKINSLNVSVALGIILFAWKN 201 >gi|91776534|ref|YP_546290.1| RNA methyltransferase TrmH, group 2 [Methylobacillus flagellatus KT] gi|91710521|gb|ABE50449.1| RNA methyltransferase TrmH, group 2 [Methylobacillus flagellatus KT] Length = 154 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R + + E L ++ E+ + Sbjct: 1 MFEIVLYQPEIPPNTGNIIRLCANSNTRLHLVKPLGFELEDKQLKRAGLDYHEYASLVVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250 + Q + + + G E +GL + + + Sbjct: 61 EDWEACKQALAGRRTFALTTKG--STRHSDIRFLPGNVFVFGPETRGLPEEIRAEFSPEY 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN+AA+ LY Sbjct: 119 RIRLPMMPQSRSLNLSNSAAILLYEAWRQ 147 >gi|83816316|ref|YP_444648.1| putative RNA methyltransferase [Salinibacter ruber DSM 13855] gi|83757710|gb|ABC45823.1| putative RNA methyltransferase [Salinibacter ruber DSM 13855] Length = 312 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 6/213 (2%) Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPT 125 + ++ + V P T+ + E +A Sbjct: 97 VEVVVTPEGRGDPTVQALLEQLSVSVHETDPDTMTTLTDVETPQGVVAVAERRLRDPETV 156 Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + + + ++VLD + DP N+G +LR+A F ++ + + ++ +G+ Sbjct: 157 PEQIGEAGTVLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPKVMRAGAGSHW 216 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +P R L ++ G G + + AL+LG+E GL Sbjct: 217 ALPLARTDAPGPFLDRLRRHGAALYGADLQGTRADAW-GPDRPSALVLGSEAHGLSAAVL 275 Query: 246 ETATSMAHLHMPGI---IKALNVSNAAAVALYI 275 + L ++LNV+ A + LY Sbjct: 276 DRLDLTVSLPGAPDRPAAESLNVAVAGGILLYE 308 >gi|238789575|ref|ZP_04633359.1| Methyltransferase [Yersinia frederiksenii ATCC 33641] gi|238722328|gb|EEQ13984.1| Methyltransferase [Yersinia frederiksenii ATCC 33641] Length = 167 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 49/158 (31%), Gaps = 10/158 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R C + + L ++ E Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDS--------KKPLEQEIKNDKIALILGAEGKGLRPKT 244 + L + G Q+ G S L+ G E +GL P Sbjct: 61 HDYQAFLDSENLDGAQSTGPQSARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPPFV 120 Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + M +++N+SNA +V +Y Sbjct: 121 LDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 158 >gi|332974393|gb|EGK11319.1| rRNA methylase [Psychrobacter sp. 1501(2011)] Length = 159 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 27/55 (49%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++A+ G E +G+ + + + + M G+I++LN++ + + LY Sbjct: 83 QKRLAVWFGNESRGISEIAIKRSEACVQIEMAGMIESLNLATSTGIVLYEVTKQR 137 >gi|300705287|ref|YP_003746890.1| tRNA/rRNA methyltransferase (spou) [Ralstonia solanacearum CFBP2957] gi|299072951|emb|CBJ44307.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum CFBP2957] Length = 175 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P E A + ++ E+ Sbjct: 20 MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVH 79 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 +N L+ + L++ P + G+E +GL + +E + Sbjct: 80 ANWEAFLRDAQPDPARMFALTTRGSTPFAGLAFQPGDWFVFGSETRGLSEERREWFPPSQ 139 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 140 RIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 168 >gi|48428734|gb|AAT42383.1| putative rRNA methylase [Collimonas fungivorans Ter331] Length = 160 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 6/153 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R + P + + + ++ ++ Sbjct: 1 MFHVVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDDSKMRRAGLDYHDYATMQVH 60 Query: 193 SNLTDALQKMH----SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-- 246 ++ D + M + +++ P + G+E +GL P +E Sbjct: 61 ADWNDFVASMRDAGSYDPSRMFAMTTHGSTPFASLQFRPGDIFVFGSETRGLDPALRESF 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L M ++LN+SN AV +Y Sbjct: 121 APSQRIRLPMRPDNRSLNLSNTVAVVVYEAWRQ 153 >gi|269962479|ref|ZP_06176828.1| rRNA methyltransferase [Vibrio harveyi 1DA3] gi|269832775|gb|EEZ86885.1| rRNA methyltransferase [Vibrio harveyi 1DA3] Length = 159 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 5/149 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L N G I+R + + E + ++ + R + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 L+ + L + + K + L+ G E +GL ++ Sbjct: 64 QAFLEYLEKEKQGNYRLFACTTKTTGHHVDAKYQEGDVLMFGPETRGLPADVIDSLPMEQ 123 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 RIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152 >gi|223986174|ref|ZP_03636195.1| hypothetical protein HOLDEFILI_03505 [Holdemania filiformis DSM 12042] gi|223961882|gb|EEF66373.1| hypothetical protein HOLDEFILI_03505 [Holdemania filiformis DSM 12042] Length = 169 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 2/150 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I+R+ VA +C + + + +S E + Sbjct: 1 MIHVVLYEPEIPQNTGNIMRTCVAANCRLHLIEPLGFSLDEQKIRRSGMDYREKLQMSVY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQ-ETATS 250 + + F + + +K L+ G E G+ + Sbjct: 61 PDWAAFCAQNPDGEFYFLTRYGKQPPASFDYTRTEKDIYLVFGRESTGIPKAILRDHLDR 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A L M ++LN+SN A+ +Y Sbjct: 121 CARLPMVADARSLNLSNCVAICVYEVLRQL 150 >gi|125972651|ref|YP_001036561.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405] gi|256004738|ref|ZP_05429714.1| RNA methyltransferase, TrmH family, group 2 [Clostridium thermocellum DSM 2360] gi|281416843|ref|ZP_06247863.1| RNA methyltransferase, TrmH family, group 2 [Clostridium thermocellum JW20] gi|125712876|gb|ABN51368.1| RNA methyltransferase, TrmH family, group 2 [Clostridium thermocellum ATCC 27405] gi|255991331|gb|EEU01437.1| RNA methyltransferase, TrmH family, group 2 [Clostridium thermocellum DSM 2360] gi|281408245|gb|EFB38503.1| RNA methyltransferase, TrmH family, group 2 [Clostridium thermocellum JW20] gi|316941111|gb|ADU75145.1| RNA methyltransferase, TrmH family, group 2 [Clostridium thermocellum DSM 1313] Length = 164 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 3/149 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R+ A + + E L ++ + + Sbjct: 1 MAINVVLVEPEIPQNTGNIARTCAAVGANLHLVKPLGFSVEDRYLKRAGLDYWDKVNIKY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250 + ++ K F + D ++ G E GL + E Sbjct: 61 YDSFSELRDKYKEHIFYYSTTKAQKLYTD--VKYPDDCFIVFGKETAGLPEELLVENKEW 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN+ A+ +Y Sbjct: 119 CIRIPMRDDIRSLNLSNSVAIIVYEALRQ 147 >gi|302535528|ref|ZP_07287870.1| rRNA methylase [Streptomyces sp. C] gi|302444423|gb|EFL16239.1| rRNA methylase [Streptomyces sp. C] Length = 245 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 82/235 (34%), Gaps = 13/235 (5%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV-KTVPPQTIDK 103 + + + L G H + AL + + + + L V + V P + + Sbjct: 14 RDDVVLLDGFHALKHALRFGAEVLDVVADEPERVRELAAGLAPDVEAAVARLVRPGRLKE 73 Query: 104 IVGKEAVHQGLALETAPLLSP---TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 ++ + AL P L + +++LD+ + N+GA++R A F Sbjct: 74 LLPRVHPTGVAALAVRPGREAGRAALARMPRHAPVVLLDNPRNLGNVGAVVRLAAGFGAT 133 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G++T P V+ A ++ + + + Sbjct: 134 GVVTRGDLDPWHPNVVRAGAGLHYATTVDR---------LELEELPPGPVYALDPEGEDI 184 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + D L G+E G+ P+ + A + L M + + N++ + A+ L+ Sbjct: 185 RALVLPDDALLAFGSERHGISPELRARADHLVSLPMRPQVSSYNLATSVAMTLFH 239 >gi|271502514|ref|YP_003335540.1| tRNA/rRNA methyltransferase SpoU [Dickeya dadantii Ech586] gi|270346069|gb|ACZ78834.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech586] Length = 154 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R A C + E L ++ H Sbjct: 1 MFHIALYEPQIAPNTGNIIRLAANNGCSLHLIEPLGFDFEEKKLRRAGLDY--HDLANVS 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 + G + ++ +P ++ L+ G+E GL + + + Sbjct: 59 RHRNYQDFLQAVAGQRIFACTTKGSRPYDEPDYQPGDVLLFGSETAGLPDEIRNGFAPEN 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN+ A+ Y Sbjct: 119 RIRIPMEPNCRSLNLSNSVAIISYEAWRQ 147 >gi|83746863|ref|ZP_00943910.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551] gi|207727800|ref|YP_002256194.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2] gi|207742203|ref|YP_002258595.1| trna/rrna methyltransferase protein [Ralstonia solanacearum IPO1609] gi|83726448|gb|EAP73579.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551] gi|206591041|emb|CAQ56653.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2] gi|206593591|emb|CAQ60518.1| trna/rrna methyltransferase protein [Ralstonia solanacearum IPO1609] Length = 156 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P E A + ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 ++ L+ + L++ P + G+E +GL + +E + Sbjct: 61 ADWEAFLRDAQPDPARMFALTTRGSTPFASLAFQPGDWFVFGSETRGLSEERREWFPPSQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149 >gi|313836588|gb|EFS74302.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL037PA2] gi|314928098|gb|EFS91929.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL044PA1] gi|314972098|gb|EFT16195.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL037PA3] Length = 99 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HFA 281 IA ++G E GL + A + + M G +++LN+S AAAV LY T + A Sbjct: 42 LKRPIAWLMGNEAWGLPEADRALADEVVGVPMWGAVESLNLSTAAAVVLYATASEQRA 99 >gi|253579603|ref|ZP_04856872.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849104|gb|EES77065.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 166 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268 ++ + + + ++ G E G+ + + M G I++LN+SN+ Sbjct: 78 YYATTKAPQTYTDVHYEEDCYIMFGKESAGIPEDILVNNQETCVRIPMIGDIRSLNLSNS 137 Query: 269 AAVALYITQNH 279 A+ LY Sbjct: 138 VAIVLYEALRQ 148 >gi|303325560|ref|ZP_07356003.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3] gi|302863476|gb|EFL86407.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3] Length = 159 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 5/144 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G + R A + + E+ L ++ ++ + Sbjct: 3 IVLFEPEIPPNTGNVARLCAATGTELHLIEPLGFKLENRYLKRAGLDYWPNVRLFTWPDW 62 Query: 196 TDALQKM----HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 Q+ T S P++ + +LI G E +GL P+ + + Sbjct: 63 RAFAQRPGRPATERWVMTSAKSRHGSAPVQHFAFQPEDSLIFGPETRGLPPEMLDASPHH 122 Query: 252 AHLHMP-GIIKALNVSNAAAVALY 274 + M G +++LN+S +A + LY Sbjct: 123 VRIPMREGGVRSLNLSTSAGIVLY 146 >gi|322420889|ref|YP_004200112.1| tRNA/rRNA methyltransferase SpoU [Geobacter sp. M18] gi|320127276|gb|ADW14836.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. M18] Length = 161 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 225 KNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + ++ G E KGL + E + + + G +++LN+S +A + LY Sbjct: 96 FHPGDFIVFGKETKGLPEELIEAHPETSVRIPIIGRVRSLNLSTSAGIVLYEALRQ 151 >gi|188591074|ref|YP_001795674.1| tRNA/rRNA methyltransferase [Cupriavidus taiwanensis LMG 19424] gi|170937968|emb|CAP62952.1| putative tRNA/rRNA methyltransferase [Cupriavidus taiwanensis LMG 19424] Length = 156 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A + ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLDDARMRRAGLDYHEYATMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + L++ P Q + G+E +GL P+ +E Sbjct: 61 DSWDALMASEQPDPTRMFALTTRGSTPFGQVAFRPGDWFVFGSETRGLSPERREWFPPAQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149 >gi|161505771|ref|YP_001572883.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867118|gb|ABX23741.1| hypothetical protein SARI_03947 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 157 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFAAVQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250 + A + L++ + L+ G E +GL + + Sbjct: 59 RHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQNGDYLMFGPETRGLPASILDALSKEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMPNSRSMNLSNAVSVVVYEAWRQL 148 >gi|206901633|ref|YP_002251674.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12] gi|206740736|gb|ACI19794.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12] Length = 153 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 225 KNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + LI GAE G+ + E + + M G +++LN+S++ A+ +Y K Sbjct: 94 YQEGDYLIFGAEDYGIPREIIERYWENSVSIPMFGPVRSLNLSSSVAIVVYEALRQIKK 152 >gi|157874196|ref|XP_001685588.1| hypothetical protein [Leishmania major strain Friedlin] gi|68128660|emb|CAJ08792.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 2043 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 2/175 (1%) Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 ++ V E L P + +++V + +P NI + R F+ + I+ + Sbjct: 1859 QKKVSSWWTSEVYNELHPRSLRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAVESIVVPE 1918 Query: 167 RYSPSESAVLA--KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + +A +SA + + + PLEQ Sbjct: 1919 KKVFEHPHFVAAARSAELWIPWEEVAPKDLPCYLEGLRRRGYVVVGIEQTAASVPLEQFS 1978 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ A++LGAEG+G+ + G+I++LNV A A+ +Y Sbjct: 1979 FPERCAVVLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQ 2033 >gi|4104449|gb|AAD02043.1| tRNA/rRNA methyltransferase [Brucella abortus] Length = 159 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 1/152 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +L + L + P N G ILR A + L ++ LE R Sbjct: 1 MELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTR 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + G + LS+ + P + L+ G E G+ + A Sbjct: 61 HPDWNRFDAWRKNAGRGLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADER 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282 + M ++LN++ + A+ +K Sbjct: 121 LLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 152 >gi|56415585|ref|YP_152660.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364512|ref|YP_002144149.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129842|gb|AAV79348.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095989|emb|CAR61576.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 157 Score = 79.1 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFAAVQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + A + L++ D L+ G E +GL + Sbjct: 59 RHHDYAAFVAAENPQRLFALTTKGTAAHSAVSYQDGDYLMFGPETRGLPASILDALPKEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|260910662|ref|ZP_05917321.1| SpoU family RNA methylase [Prevotella sp. oral taxon 472 str. F0295] gi|260635172|gb|EEX53203.1| SpoU family RNA methylase [Prevotella sp. oral taxon 472 str. F0295] Length = 175 Score = 78.7 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 3/153 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L++VLD+V HN+G++LRS AF + + + SA + K+A GA + + + Sbjct: 16 PLIVVLDNVRSLHNVGSVLRSCDAFRVEAVYLCGITATPPSAEIHKTALGAEDSVTWKYF 75 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETAT 249 + TDA+ ++H+ G + + + + Q + + + A++LG E KG++ + Sbjct: 76 AQTTDAIDELHAKGTKVFAVEQVAGSTMLQNLDTEVGTRYAVVLGNEVKGVQQTVVDLCD 135 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + G +LNVS AA + ++ K Sbjct: 136 GCLEIPQFGTKHSLNVSVAAGIVVWEFAKKIGK 168 >gi|295402439|ref|ZP_06812392.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius C56-YS93] gi|312112708|ref|YP_003991024.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1] gi|294975530|gb|EFG51155.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius C56-YS93] gi|311217809|gb|ADP76413.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1] Length = 237 Score = 78.7 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 5/161 (3%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + R + ++ + V+DPHN A+LR+A AF + +P + L + Sbjct: 38 MYDILQQRTRYVTVLTEAVDDPHNQAAVLRTAEAFGVQDVYVVAGRAPFQPNPLVTRHAD 97 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + + + L + + + ++ + AL+ G E G+ Sbjct: 98 KWLTLRQQPDIVTAIQDLQAKGYRVYASYLGEGTIRLCDIDV-SQPTALLFGNEHSGVSQ 156 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYI----TQNH 279 + A + + M G +++ N+S AAA+ALY + Sbjct: 157 EAIRVADATFMIPMYGFVQSFNISVAAALALYDVTERARRQ 197 >gi|255078650|ref|XP_002502905.1| predicted protein [Micromonas sp. RCC299] gi|226518171|gb|ACO64163.1| predicted protein [Micromonas sp. RCC299] Length = 234 Score = 78.7 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%) Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 PLE A+ILG E G+ + + A ++ M G ++LNVS A+++ ++ Sbjct: 130 HPLEHYDWTVPTAVILGNERDGVSDEAKRLADGGVYISMNGFTESLNVSVASSMIMHHAV 189 Query: 278 NHFAK 282 + Sbjct: 190 QDRTR 194 >gi|237753039|ref|ZP_04583519.1| RNA methyltransferase [Helicobacter winghamensis ATCC BAA-430] gi|229375306|gb|EEO25397.1| RNA methyltransferase [Helicobacter winghamensis ATCC BAA-430] Length = 228 Score = 78.7 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 80/224 (35%), Gaps = 5/224 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YG V L S KI Q+L K + P+ V + + + Sbjct: 2 VVYGKRVVEYILTKHSDKIQQVLLAKEIDKKQFRAFARL-NVPLVRVDSKKAQSLA-RGG 59 Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 HQG LE APL+ ++ ++VL ++D NIGA+ R+A DGI+ Sbjct: 60 NHQGYLLEIAPLVPLEFSTLKAMNFVLVLCGISDVGNIGALFRTAFVLGVDGIVICGLKD 119 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229 + VL S+ + + K + K Sbjct: 120 FKQEGVLRASSGA---MLDMPFCLVYNALDVANELKFAGFRLYGASLKGVESNGVTQGKK 176 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LGAEG GL K + + +LNVS A A+ + Sbjct: 177 ALFLGAEGNGLSAKILKKMDINLTIAQKREFDSLNVSTAGAILI 220 >gi|94309202|ref|YP_582412.1| RNA methyltransferase TrmH, group 2 [Cupriavidus metallidurans CH34] gi|93353054|gb|ABF07143.1| putative rRNA methylase [Cupriavidus metallidurans CH34] Length = 156 Score = 78.7 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P E A + ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLEDARMRRAGLDYHEYATMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + L++ P Q + G+E +GL P+ +E + Sbjct: 61 ESWDALMAAEQPDPTRMFALTTHGSTPFGQVSFAPGDWFVFGSETRGLAPERREWFPSAQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RIRLPMRPNNRSLNLSNTVAVVVFEAWRQ 149 >gi|120597274|ref|YP_961848.1| RNA methyltransferase [Shewanella sp. W3-18-1] gi|146294582|ref|YP_001185006.1| RNA methyltransferase [Shewanella putrefaciens CN-32] gi|120557367|gb|ABM23294.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp. W3-18-1] gi|145566272|gb|ABP77207.1| RNA methyltransferase, TrmH family, group 2 [Shewanella putrefaciens CN-32] Length = 154 Score = 78.7 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R C + E L ++ + R Sbjct: 1 MFHIALYEPEIAPNTGNIIRLCANNGCQLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + L+ M +P + L+ G E +GL E+ Sbjct: 61 KDFDAFLEAMTGKRIMACTTKG--SRPHTELSFAKDDVLLFGPETRGLPMAIIESIPTEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ Y Sbjct: 119 RLRIPMAATSRSLNLSNAVAIISYEAWRQL 148 >gi|156545324|ref|XP_001605709.1| PREDICTED: hypothetical protein [Nasonia vitripennis] Length = 458 Score = 78.7 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 31/335 (9%), Positives = 78/335 (23%), Gaps = 58/335 (17%) Query: 6 KKKSEKIFSLKDSHY-AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 K E + K+ N + + + + + E + L GV + A+ Sbjct: 114 KAYEETRKRKESKTVLTKVHENEKIVSSIMMSLRSKKQRKKDELILLEGVRFIEDAIKAG 173 Query: 65 SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL-------- 116 + + + LD+ F V Q + V Sbjct: 174 IVPQYIFFSRWEDIKHLDFSNTGTKLFKVTYRNIQLWSTLTTSPGVMGIFKRPEPLKVKK 233 Query: 117 --------------------------------------ETAPLLSPTLDAVRNSQLLMVL 138 + L + + + + Sbjct: 234 SSLPITIICDNVRDPGNMGSILRAAAGVGVEKVVLTKGCVDFWDTKVLRSATGAHFRVPI 293 Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL--- 195 +I + + +A+ + A Sbjct: 294 LGSQKWDDIKSSIDDDAQIYVADNNVDAHIKDFAEIEMAEEKTEADTETEDQEPEIQEPA 353 Query: 196 ----TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS- 250 +++ + + + +++ LI+G E +GL ++ E Sbjct: 354 KTKSQKIIKEDRNDCLLLRNSNLPVIPYYAVDYTQNQVILIVGGETEGLSRESYELIEKK 413 Query: 251 ---MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ++ + I +LN A + + + F + Sbjct: 414 QGIRVNIPLDNGIDSLNAGMALGIIAFEVKRQFLR 448 >gi|145341523|ref|XP_001415856.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576079|gb|ABO94148.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 207 Score = 78.7 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYITQ 277 A I+G EG G+ + ++ G +LNVS AA++ ++ Sbjct: 88 HPFTGNTAFIMGNEGHGMTEAQKAICDGFVYIPQYGPGTASLNVSVAASIVMHHFA 143 >gi|198282557|ref|YP_002218878.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666125|ref|YP_002424748.1| RNA methyltransferase, TrmH family, group 2 [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247078|gb|ACH82671.1| RNA methyltransferase, TrmH family, group 2 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518338|gb|ACK78924.1| RNA methyltransferase, TrmH family, group 2 [Acidithiobacillus ferrooxidans ATCC 23270] Length = 171 Score = 78.7 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L ++L P N G I+R + + L ++ H Sbjct: 5 FLHVILYEPEIPPNTGNIIRLCANTGATLHLVEPLGFAWDDRRLRRAGLDY--HEFAQVH 62 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + A + S+ + AL+ G E +GL + A Sbjct: 63 RHADWASCRAFLGDAHVFAFSTKGTQFYHDVAYQPGDALLFGPETRGLPAHLLNSLPARQ 122 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L M ++LN+SNA AVA++ Sbjct: 123 VLRLPMRSGQRSLNLSNACAVAVFEAWRQ 151 >gi|170724634|ref|YP_001758660.1| RNA methyltransferase [Shewanella woodyi ATCC 51908] gi|169809981|gb|ACA84565.1| RNA methyltransferase, TrmH family, group 2 [Shewanella woodyi ATCC 51908] Length = 154 Score = 78.7 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R C + E L ++ + R Sbjct: 1 MFHIALYEPEIAPNTGNIIRLCANNGCQLHLIEPLGFDLEEKKLRRAGLDYNDLTRVTRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + LQ M + + + L+ G E +GL + E+ + Sbjct: 61 KDFESFLQAMEGKRIMACTTKG--SRHHTELSFEKEDVLLFGPETRGLPIEIIESLPTSQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ Y Sbjct: 119 RLKIPMTPNSRSLNLSNAVAIISYEAWRQI 148 >gi|237802221|ref|ZP_04590682.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025078|gb|EGI05134.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. oryzae str. 1_6] Length = 151 Score = 78.7 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G ++R C + + L ++ E+ Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 ++L L+K+ + +P A + G E +GL ++ + Sbjct: 61 ADLATCLEKIGNPRLFAFTTKG--SRPFHDASFEPGDAFLFGPESRGLPADILDSLSSDQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AVA+Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|157737324|ref|YP_001490007.1| RNA methylase [Arcobacter butzleri RM4018] gi|157699178|gb|ABV67338.1| RNA methylase, SpoU family [Arcobacter butzleri RM4018] Length = 154 Score = 78.7 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 46/148 (31%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N+G I R A +C + + + A + + Sbjct: 1 MFNIVLLEPRIPGNVGTIGRLCFALNCKLHLIKPYGFGEITEKEVRRAGLDYWYDLEVFE 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-M 251 + + + + ++ +K N G E GL ++ Sbjct: 61 YENIEDFWSKNPFNDRHFLATTKTKNVYFDAKFNVGDYFYFGREDAGLPEDLLSKSSHTC 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++N+ ++ Y Sbjct: 121 ITIPMTNDARSLNIANSVSIVAYEALRQ 148 >gi|167622262|ref|YP_001672556.1| RNA methyltransferase [Shewanella halifaxensis HAW-EB4] gi|167352284|gb|ABZ74897.1| RNA methyltransferase, TrmH family, group 2 [Shewanella halifaxensis HAW-EB4] Length = 153 Score = 78.7 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R C + E L ++ + Sbjct: 1 MFHIALYEPEIAPNTGNIIRLIANNGCKLHLIEPLGFDLEDKKLRRAGLDYADLANVTHH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 N L+ M +P + L+ G E +GL ++ Sbjct: 61 KNFEAFLEAMDGKRIMACTTKG--SRPHSELTFKQDDVLLFGPESRGLPADIIDSIPTEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ Y Sbjct: 119 RLRIPMMSTSRSLNLSNAVAIISYEAWRQL 148 >gi|78486290|ref|YP_392215.1| tRNA/rRNA methyltransferase (SpoU) [Thiomicrospira crunogena XCL-2] gi|78364576|gb|ABB42541.1| rRNA methylase family protein [Thiomicrospira crunogena XCL-2] Length = 154 Score = 78.7 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + + A + G E +GL E+ + M ++LN++NA +V Y Sbjct: 85 YYTEPVFENGDAFLFGPETRGLPKDVIESVPEDQRLTIPMIPGGRSLNLANAVSVMAYEA 144 Query: 277 QNHF 280 Sbjct: 145 WRQL 148 >gi|82541768|ref|XP_725101.1| RNA methyltransferase [Plasmodium yoelii yoelii str. 17XNL] gi|23479981|gb|EAA16666.1| RNA methyltransferase, TrmH family, putative [Plasmodium yoelii yoelii] Length = 227 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 1/155 (0%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + +++ +++ ++ NIG I+RS VAF+ I R S + Sbjct: 5 NNFEDDKERDGKTKMYVIIYNIGKKKNIGNIVRSCVAFNVSEIFVVGRNKKETSFFGSMG 64 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 G + + + L + L + + + + +KN A + G EG G Sbjct: 65 THGYIRIRYFSNMIELKEYLNDNNILLYGCEITNQSIPITKQPFVKNKDTAFLFGNEGTG 124 Query: 240 LRPKTQETATSMAHLHMPGI-IKALNVSNAAAVAL 273 + + + + ++ G I +LNVS + A+ L Sbjct: 125 ISDQIIKMCDKIIYIPQYGNGIASLNVSVSCAIIL 159 >gi|315604144|ref|ZP_07879210.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313850|gb|EFU61901.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 153 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 53/150 (35%), Gaps = 5/150 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L ++ P N GA +R + + + A L ++ + + Sbjct: 1 MLHVIFWEPEIPGNTGAAIRLSACTGSMLHLIKPLGFDMDDAKLRRAGLD---YHDLAHV 57 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + + + + + + D L+ G E GL + Sbjct: 58 TVHENLDEALDQVPGRVWAFTGHAHTMHSEVAYADGDGLLFGRESVGLSSEAMAHRRVED 117 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +HM +++LN++N+A++ALY Sbjct: 118 LVRIHMVKGVRSLNLANSASIALYEAWRQL 147 >gi|288942723|ref|YP_003444963.1| tRNA/rRNA methyltransferase SpoU [Allochromatium vinosum DSM 180] gi|288898095|gb|ADC63931.1| tRNA/rRNA methyltransferase (SpoU) [Allochromatium vinosum DSM 180] Length = 158 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + G E +GL E+ + + M ++LN+SNA AV LY Sbjct: 91 FQPGDAFLFGPETRGLPESVLESVSEEHRLQIPMRPGNRSLNLSNAVAVVLYEAWRR 147 >gi|260881101|ref|ZP_05403620.2| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM 20544] gi|260849520|gb|EEX69527.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM 20544] Length = 167 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 3/148 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I R + + ++ L ++ + Sbjct: 4 PLHIVLIEPEIPGNTGNIARLCAGTGIELHLVRPLGFSTDDKHLKRAGLDYWPLVKVHYH 63 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSM 251 N + ++ F + + L+ G E G+ + Sbjct: 64 DNFAEVQERYAGHNFYYLSTKAPRSYTE--VHYTMDDMLVFGKESAGIPEPILKANWEHC 121 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN+ AV Y Sbjct: 122 VRIPMIPEARSLNLSNSVAVVAYEAMRQ 149 >gi|169831211|ref|YP_001717193.1| RNA methyltransferase [Candidatus Desulforudis audaxviator MP104C] gi|169638055|gb|ACA59561.1| RNA methyltransferase, TrmH family, group 2 [Candidatus Desulforudis audaxviator MP104C] Length = 153 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 3/148 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I R+ A + + L ++ + Sbjct: 1 MVHVVLVEPEIPQNTGNIARTCAATGSVLHLVHPLGFSVSNRYLKRAGLDYWHLVEVHHH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSM 251 + + ++ F + D L+ G E GL + E A Sbjct: 61 PSFDEVCRRYPDRPFFFATARR--GRRYTDARYPDGSFLVFGKETTGLPAELLEANAEQC 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 L ++LN+SNA AV +Y Sbjct: 119 VRLPQREPARSLNLSNAVAVLVYEALRQ 146 >gi|319778873|ref|YP_004129786.1| tRNA (cytosine34-2'-O-)-methyltransferase [Taylorella equigenitalis MCE9] gi|317108897|gb|ADU91643.1| tRNA (cytosine34-2'-O-)-methyltransferase [Taylorella equigenitalis MCE9] Length = 156 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 2/150 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N+G I+R + C+ + + L ++ EH Sbjct: 1 MFNIVLVSPEMPANVGNIIRLSANTGCNLHLVRPFLFHLDDKHLKRAGLDYHEHANIKIH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + L +AL + + + +S+ KK L I G E GL+ Sbjct: 61 NTLEEALNTIGTDRNRCFAISTKGKKHLSDINFQKGDVFIFGRESAGLKDYEWSIIGIDQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ +Y Sbjct: 121 AVRIPMKANSRSLNISNAVAITVYEAWRQI 150 >gi|170744270|ref|YP_001772925.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46] gi|168198544|gb|ACA20491.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46] Length = 163 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 51/147 (34%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L + L + P N G +LR A I L +S L+H+ R Sbjct: 1 MLRLALYQPDIPQNTGTMLRLAACLGAAVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + + + + ++ P + L++G E G+ A + Sbjct: 61 RSFAEFEAWRRRASLRLVLATTAGALPYTEFAYRPDDCLLVGRESAGVPDSVHAAAEARV 120 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + + +++LNV+ AAA+ L Sbjct: 121 VIPLRPGLRSLNVAVAAAMILGEALRQ 147 >gi|313763452|gb|EFS34816.1| conserved domain protein [Propionibacterium acnes HL013PA1] gi|313773427|gb|EFS39393.1| conserved domain protein [Propionibacterium acnes HL074PA1] gi|313793838|gb|EFS41867.1| conserved domain protein [Propionibacterium acnes HL110PA1] gi|313801228|gb|EFS42486.1| conserved domain protein [Propionibacterium acnes HL110PA2] gi|313811442|gb|EFS49156.1| conserved domain protein [Propionibacterium acnes HL083PA1] gi|313816634|gb|EFS54348.1| conserved domain protein [Propionibacterium acnes HL059PA1] gi|313822264|gb|EFS59978.1| conserved domain protein [Propionibacterium acnes HL036PA1] gi|313831181|gb|EFS68895.1| conserved domain protein [Propionibacterium acnes HL007PA1] gi|313834842|gb|EFS72556.1| conserved domain protein [Propionibacterium acnes HL056PA1] gi|314914611|gb|EFS78442.1| conserved domain protein [Propionibacterium acnes HL005PA4] gi|314920660|gb|EFS84491.1| conserved domain protein [Propionibacterium acnes HL050PA3] gi|314924560|gb|EFS88391.1| conserved domain protein [Propionibacterium acnes HL036PA3] gi|314930430|gb|EFS94261.1| conserved domain protein [Propionibacterium acnes HL067PA1] gi|314957364|gb|EFT01467.1| conserved domain protein [Propionibacterium acnes HL002PA1] gi|314966004|gb|EFT10103.1| conserved domain protein [Propionibacterium acnes HL082PA2] gi|314968370|gb|EFT12469.1| conserved domain protein [Propionibacterium acnes HL037PA1] gi|314974060|gb|EFT18156.1| conserved domain protein [Propionibacterium acnes HL053PA1] gi|314978785|gb|EFT22879.1| conserved domain protein [Propionibacterium acnes HL072PA2] gi|314981817|gb|EFT25910.1| conserved domain protein [Propionibacterium acnes HL110PA3] gi|315081118|gb|EFT53094.1| conserved domain protein [Propionibacterium acnes HL078PA1] gi|315083439|gb|EFT55415.1| conserved domain protein [Propionibacterium acnes HL027PA2] gi|315087006|gb|EFT58982.1| conserved domain protein [Propionibacterium acnes HL002PA3] gi|315089181|gb|EFT61157.1| conserved domain protein [Propionibacterium acnes HL072PA1] gi|315090685|gb|EFT62661.1| conserved domain protein [Propionibacterium acnes HL110PA4] gi|315094896|gb|EFT66872.1| conserved domain protein [Propionibacterium acnes HL060PA1] gi|315095235|gb|EFT67211.1| conserved domain protein [Propionibacterium acnes HL038PA1] gi|315099080|gb|EFT71056.1| conserved domain protein [Propionibacterium acnes HL059PA2] gi|315104168|gb|EFT76144.1| conserved domain protein [Propionibacterium acnes HL050PA2] gi|315106687|gb|EFT78663.1| conserved domain protein [Propionibacterium acnes HL030PA1] gi|315108913|gb|EFT80889.1| conserved domain protein [Propionibacterium acnes HL030PA2] gi|327329570|gb|EGE71329.1| rRNA methyltransferase [Propionibacterium acnes HL096PA3] gi|327333955|gb|EGE75671.1| rRNA methyltransferase [Propionibacterium acnes HL097PA1] gi|327444570|gb|EGE91224.1| conserved domain protein [Propionibacterium acnes HL043PA1] gi|327446242|gb|EGE92896.1| conserved domain protein [Propionibacterium acnes HL013PA2] gi|328752004|gb|EGF65620.1| conserved domain protein [Propionibacterium acnes HL020PA1] gi|328757793|gb|EGF71409.1| conserved domain protein [Propionibacterium acnes HL025PA2] Length = 79 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HFA 281 IA ++G E GL + A + + M G ++LN+S AAAV LY T + A Sbjct: 21 CLKRPIAWLMGNEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLYATASEQRA 79 >gi|163814594|ref|ZP_02205983.1| hypothetical protein COPEUT_00745 [Coprococcus eutactus ATCC 27759] gi|158450229|gb|EDP27224.1| hypothetical protein COPEUT_00745 [Coprococcus eutactus ATCC 27759] Length = 166 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268 ++ ++K D ++ G E G+ + + + + M I++LN+ N+ Sbjct: 76 YMATTKARKKYTDVRFEDDAYIMFGKESAGIPEEILVDYKDTAIRIPMFPDIRSLNLGNS 135 Query: 269 AAVALYITQNH 279 A+ LY Sbjct: 136 VAIVLYEALRQ 146 >gi|326336260|ref|ZP_08202431.1| tRNA/rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691434|gb|EGD33402.1| tRNA/rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 221 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 1/170 (0%) Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 G + + A R + ++ + HN A++R+ F ++ Sbjct: 13 GFITQERKERFSQILAQRTQYFTVAIEDIFQMHNTSAVVRTCEVFGVQTTHIIEKKYGKR 72 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + I + K+ + + + S PLE + K A Sbjct: 73 LDSKIAMGAEKWVTIKRYSNTQSCIEELKLQGYRIV-ATVPAPSAIPLEHFNIDAKSAFF 131 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G E GL + A + M G ++LN+S + A+ L N K Sbjct: 132 FGTERDGLSQEVISQADEFLTIPMVGFTESLNISVSVAIILQYLTNKLRK 181 >gi|212704324|ref|ZP_03312452.1| hypothetical protein DESPIG_02379 [Desulfovibrio piger ATCC 29098] gi|212672286|gb|EEB32769.1| hypothetical protein DESPIG_02379 [Desulfovibrio piger ATCC 29098] Length = 161 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 5/147 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R + + E L ++ H+ + Sbjct: 3 IVLFEPEIPPNTGNIARLCASTGIHLNLIEPLGFKLEDRYLKRAGLDYWPHVRMDVWPDW 62 Query: 196 TDA----LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + + S+ +PL+ L+ G E +GL P+ + + Sbjct: 63 DSWLAAATAENGGTPPRCVMTSARGGEPLQHFAFAPDDCLVFGPETRGLPPEILKRSPYK 122 Query: 252 AHLHMPGI-IKALNVSNAAAVALYITQ 277 + M ++++N+S AA + L+ Sbjct: 123 VRIPMLKDSVRSINLSTAAGIVLFTAM 149 >gi|15807204|ref|NP_295933.1| rRNA methylase SpoU [Deinococcus radiodurans R1] gi|6460013|gb|AAF11758.1|AE002054_3 rRNA methylase SpoU [Deinococcus radiodurans R1] Length = 230 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 5/156 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L +++D VN PHN+ AI+R+ A + ++ + Sbjct: 18 RQPTLTVLMDEVNKPHNLSAIIRTCDAVGVPEAHAVPPKHGTLASFEGHTYEATSGSAHK 77 Query: 190 IRISNLTDA-----LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + S + ++LGAE G+ + Sbjct: 78 WVKVHPHADAVSAVRELQAQGFQVLATHLSQRSVDYREPDYTKPTCVLLGAEKWGVSDEA 137 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E A + + M G++++LNVS AAA L+ Q Sbjct: 138 AEAADANIVIPMFGMVQSLNVSVAAATILFEAQRQR 173 >gi|23465262|ref|NP_695865.1| tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705] gi|23325895|gb|AAN24501.1| possible tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705] Length = 169 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 34/57 (59%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +D + ++LG+EG GL +ET ++A + + +++LN S AA ++LY N K Sbjct: 109 SDPLVVVLGSEGSGLGRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSNARRK 165 >gi|71654093|ref|XP_815672.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70880745|gb|EAN93821.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 1735 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 64/180 (35%), Gaps = 2/180 (1%) Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 D+ + ++ L L L + L+++ + +P N+ + R F+ + Sbjct: 1550 DENIQRKVTPWWNGLVYNELHPRALKQEKRQPLIVLSSLLQNPVNVAGLFRCGEIFTVEK 1609 Query: 162 IITTKR--YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 ++ + + ++ A+SA + + + + Sbjct: 1610 VVVSDQAVFAHPHFVAAARSAELWMPWEAVMAKNLPEYLGSLRQDGYTLIGIEQTAGSVS 1669 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + ++ A++LGAEG G+ + + G+I++LNV A+ +Y Sbjct: 1670 MASYRFPERAAILLGAEGHGVPAELLPVLDVCVEIPQFGLIRSLNVHVTGALVMYEYTRQ 1729 >gi|260889011|ref|ZP_05900274.1| RNA methyltransferase, TrmH family [Leptotrichia hofstadii F0254] gi|260861071|gb|EEX75571.1| RNA methyltransferase, TrmH family [Leptotrichia hofstadii F0254] Length = 157 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 17/152 (11%), Positives = 54/152 (35%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + +++L+ + + + +I + + + + Sbjct: 1 MVYKMNIVLLNPEIHVNTGNIGRTCVLTNTKLHLIKPLGFELDDKKIKRAGLDYWKDVQL 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ET 247 ++ + + + + + ++ +K+ ND ++ G E +G+ + + Sbjct: 61 FVWENWEHFWQENIENSNAKIYFATTKTKQRYTDVKFNDNDYIMFGPESRGIPEEILNKY 120 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 S + M + ++LN+SNA A+ L+ Sbjct: 121 KESNITIPMLPLGRSLNLSNAVAIVLFEALRQ 152 >gi|217971422|ref|YP_002356173.1| TrmH family RNA methyltransferase [Shewanella baltica OS223] gi|304412327|ref|ZP_07393935.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica OS183] gi|307306111|ref|ZP_07585856.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica BA175] gi|217496557|gb|ACK44750.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica OS223] gi|304349362|gb|EFM13772.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica OS183] gi|306910984|gb|EFN41411.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica BA175] Length = 154 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R C + E L ++ + R Sbjct: 1 MFHIALYEPEIAPNTGNIIRLCANNGCQLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + L+ M +P + L+ G E +GL E+ Sbjct: 61 KDFDAFLEAMAGKRIMACTTKG--SRPHTELSFAKDDVLLFGPETRGLPMAIIESIPTEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ Y Sbjct: 119 RLRIPMAATSRSLNLSNAVAIISYEAWRQL 148 >gi|74318425|ref|YP_316165.1| RNA methyltransferase CspR [Thiobacillus denitrificans ATCC 25259] gi|74057920|gb|AAZ98360.1| RNA methyltransferase CspR [Thiobacillus denitrificans ATCC 25259] Length = 154 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 2/97 (2%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 H + + G + L++ + L+ G E +GL Sbjct: 51 YHDMASVHVHADWTAVQEALAGRRWFALTTRGSRSYASVAFEAGDVLLFGPESRGLPADL 110 Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA +V ++ Sbjct: 111 LAHFDVDQRLRLPMLPGSRSLNLSNAVSVVVFEAWRQ 147 >gi|75761063|ref|ZP_00741062.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491447|gb|EAO54664.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 69 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 26/51 (50%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ALI+G EG G+R + ++ + G ++LNV+ AA + Y Q Sbjct: 13 GSFALIVGNEGNGVRQEILTKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 63 >gi|168017078|ref|XP_001761075.1| predicted protein [Physcomitrella patens subsp. patens] gi|162687761|gb|EDQ74142.1| predicted protein [Physcomitrella patens subsp. patens] Length = 241 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 56/154 (36%), Gaps = 1/154 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R + + ++ + D N+ A+ RSA A + + K + G + + Sbjct: 48 NRTYSICIAVEGLLDLGNVSAVCRSADALGFQSVHVISNETKKRYKKNRKVSMGTEKWLD 107 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQET 247 SN +D + + G++ ++ A+ G E G + + Sbjct: 108 AELWSNTSDCIDTLRQRGYRIAVTHIAPDTVSIYDMDWTIPTAVFFGNEFMGASEEAIKQ 167 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M G++++ N+S AA + ++ Sbjct: 168 SDVRCCIPMAGMVESFNISVAAGIIMHHAARDRI 201 >gi|295094554|emb|CBK83645.1| Predicted rRNA methylase (SpoU class) [Coprococcus sp. ART55/1] Length = 165 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268 ++ ++K D ++ G E G+ + + + + M I++LN+ N+ Sbjct: 76 YMATTKARKKYTDVKFEDDAYIMFGKESAGIPEEILVDYKDTSIRIPMFPDIRSLNLGNS 135 Query: 269 AAVALYITQNH 279 A+ LY Sbjct: 136 VAIVLYEALRQ 146 >gi|254423600|ref|ZP_05037318.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] gi|196191089|gb|EDX86053.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] Length = 213 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 K+A+ G E G+ E + + M G+I++LN+ + + LY + Sbjct: 134 KLAVWFGNESMGISDLAVEHSDLCVSIPMFGMIESLNLGTTSGIVLYEITKQRRE 188 >gi|299134646|ref|ZP_07027838.1| tRNA/rRNA methyltransferase (SpoU) [Afipia sp. 1NLS2] gi|298590456|gb|EFI50659.1| tRNA/rRNA methyltransferase (SpoU) [Afipia sp. 1NLS2] Length = 158 Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 53/144 (36%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + P N G ILR + + I P ++ L+ + R + Sbjct: 3 IALYQPDIPQNTGTILRLCACLAVEAHIIEPAGFPVSDRHFRRAGMDYLDQVSISRHVSW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 T + G + + L++ D L+LG E G+ + +A + Sbjct: 63 TAFRAWQQADGGRLLLLTTKGATSYLAHRYEDTDILLLGRESAGVPDEVAASADERLVIP 122 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 + +++LNV+ AA+AL Sbjct: 123 IAEGMRSLNVAVTAAMALGEALRQ 146 >gi|228472383|ref|ZP_04057148.1| SpoU protein [Capnocytophaga gingivalis ATCC 33624] gi|228276251|gb|EEK14986.1| SpoU protein [Capnocytophaga gingivalis ATCC 33624] Length = 220 Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 43/145 (29%), Gaps = 1/145 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R + ++ + HN A++R+ F + + Sbjct: 30 QRTEHFTVAIEDLFQVHNTSAVVRTCEVFGVQTAHIIEEKYGKRLDSKIAMGAEKWVTTI 89 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + + + E +I K A G E GL + A Sbjct: 90 RYPHTQPCIEALRGQGYRIVATVPPPGATPLQEFDI-TPKSAFFFGTERDGLSQEVISQA 148 Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273 + M G ++LN+S + A+ L Sbjct: 149 DECLTIPMVGFTESLNISVSVAIIL 173 >gi|317494747|ref|ZP_07953159.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917349|gb|EFV38696.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 157 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFKLHLIEPLGFTWDDKRLRRAGLDY--HEFATLK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + L++ L+ G E +GL + A Sbjct: 59 KHHDYQAFLDSEQPERLFALTTKGTPAHSAVSYQAGDYLVFGPETRGLPAYILDALPAQQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMLASSRSMNLSNAVSVVVYEAWRQL 148 >gi|160877349|ref|YP_001556665.1| RNA methyltransferase [Shewanella baltica OS195] gi|160862871|gb|ABX51405.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica OS195] gi|315269553|gb|ADT96406.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica OS678] Length = 154 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R + E L ++ + R Sbjct: 1 MFHIALYEPEIAPNTGNIIRLCANNGSQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + L+ M +P + L+ G E +GL E+ Sbjct: 61 KDFDAFLEAMAGKRIMACTTKG--SRPHTELTFAKDDVLLFGPETRGLPMAIIESIPTEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ Y Sbjct: 119 RLRIPMAATSRSLNLSNAVAIISYEAWRQL 148 >gi|153002625|ref|YP_001368306.1| RNA methyltransferase [Shewanella baltica OS185] gi|151367243|gb|ABS10243.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica OS185] Length = 154 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R + E L ++ + R Sbjct: 1 MFHIALYEPEIAPNTGNIIRLCANNGSQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + L+ M +P + L+ G E +GL E+ Sbjct: 61 KDFDAFLEAMAGKRIMACTTKG--SRPHTELTFAKDDVLLFGPETRGLPMSIIESIPTEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ Y Sbjct: 119 RLRIPMAATSRSLNLSNAVAIISYEAWRQL 148 >gi|156972520|ref|YP_001443427.1| RNA methyltransferase [Vibrio harveyi ATCC BAA-1116] gi|156524114|gb|ABU69200.1| hypothetical protein VIBHAR_00152 [Vibrio harveyi ATCC BAA-1116] Length = 159 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 5/149 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L N G I+R + + E + ++ + R + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 L+ + L + + K + L+ G E +GL ++ Sbjct: 64 QAFLEYLEKEKQGNYRLFACTTKTTGHHVDAKYQEGDVLMFGPETRGLPADVIDSLPMEQ 123 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 RIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152 >gi|325275734|ref|ZP_08141616.1| RNA methyltransferase [Pseudomonas sp. TJI-51] gi|324099138|gb|EGB97102.1| RNA methyltransferase [Pseudomonas sp. TJI-51] Length = 153 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G I+R C + + L ++ E+ R Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANSGCHLHLIEPISFELDDKRLRRAGLDYHEYATLKRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 +L + L+ + ++ P + A + G E +GL + ++ A Sbjct: 61 QSLAECLES--LGNPRLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEVLDSLPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV +Y Sbjct: 119 RLRLPMRPGCRSLNLSNTVAVTVYEAWRQ 147 >gi|296282195|ref|ZP_06860193.1| rRNA methylase [Citromicrobium bathyomarinum JL354] Length = 134 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 37/91 (40%) Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + + ++ ++ K+A+ G E +G+ + E + + Sbjct: 15 CFDHLEKNNVHSIVTSPHMKGQNNVWLHEGDFTEHTKLAVWFGNEKRGISDRAVERSEAC 74 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G+I++LN++ ++ + LY + Sbjct: 75 VAIPMFGMIESLNLATSSGIVLYEVTKQRRE 105 >gi|120556073|ref|YP_960424.1| RNA methyltransferase [Marinobacter aquaeolei VT8] gi|120325922|gb|ABM20237.1| RNA methyltransferase, TrmH family, group 2 [Marinobacter aquaeolei VT8] Length = 154 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R C + E + ++ E+ Sbjct: 1 MLHVVLYEPEIPPNTGNIIRLCANTGCQLHLIEPLGFSLEDKQMRRAGLDYSEYATVKIH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 + L + + + D L+ G E +GL + A Sbjct: 61 PDYDSFLATEQPSRLFGLTTKG--SRHYHEVAFRDGDYLMFGPETRGLPEDVRNGLPAEH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SN AA+ +Y Sbjct: 119 RLRVPMRPESRSLNLSNTAALVVYEAWRQL 148 >gi|270159513|ref|ZP_06188169.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968] gi|289165686|ref|YP_003455824.1| rRNA methylase [Legionella longbeachae NSW150] gi|269987852|gb|EEZ94107.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968] gi|288858859|emb|CBJ12781.1| putative rRNA methylase [Legionella longbeachae NSW150] Length = 148 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 48/148 (32%), Gaps = 3/148 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R + + L ++ H Sbjct: 1 MFHIVLYQPEIPPNTGNIIRLCANTGAQLHLIHPLGFSLQEKALRRAGLDY--HEWACIS 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + Q S+ ++K + + + G E GL + + TS+ Sbjct: 59 QYENWDTFILQHQQKQIYACSASAEKCYSKVQYASEDMFLFGPESNGLPKEIVQKFTSLF 118 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA AV LY Sbjct: 119 -IPMREHNRSLNLSNAVAVILYEAWRQL 145 >gi|42522737|ref|NP_968117.1| putative RNA methylase [Bdellovibrio bacteriovorus HD100] gi|39573933|emb|CAE79110.1| putative RNA methylase [Bdellovibrio bacteriovorus HD100] Length = 238 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + K AL+LG E G+ P+ A + M G +++ N+S A A+ LY Sbjct: 134 HEIDFSGKTALVLGNERDGVTPEMIAAADQTIIIPMTGFVQSFNISVAGALGLYHISQDR 193 Query: 281 AK 282 K Sbjct: 194 LK 195 >gi|120554047|ref|YP_958398.1| RNA methyltransferase [Marinobacter aquaeolei VT8] gi|120323896|gb|ABM18211.1| RNA methyltransferase, TrmH family, group 1 [Marinobacter aquaeolei VT8] Length = 287 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +AL+ G E GL + + H+ +LN++ A V Y + H+ + Sbjct: 121 RGPVALVFGRESNGLSNEELQRCHYHIHIPSNPDYSSLNLAMAVQVVCYELRMHYLR 177 >gi|146096859|ref|XP_001467955.1| hypothetical protein [Leishmania infantum JPCM5] gi|134072321|emb|CAM71027.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 2045 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q ++ A++LGAEG+G+ + G+I++LNV A A+ +Y Sbjct: 1978 QFSFPERCAVVLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQ 2035 >gi|147678560|ref|YP_001212775.1| rRNA methylase [Pelotomaculum thermopropionicum SI] gi|146274657|dbj|BAF60406.1| predicted rRNA methylase [Pelotomaculum thermopropionicum SI] Length = 152 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Query: 225 KNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E KGL P+ + + M ++LN++NA AV LY Sbjct: 90 YEPGSCLVFGKETKGLPPEILDGYPDGQIRVPMIDGARSLNLANAVAVVLYEALRQ 145 >gi|299068084|emb|CBJ39298.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum CMR15] Length = 156 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P E A + ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 ++ L+ + L++ P + G+E +GL + + + Sbjct: 61 ASWEAFLRDAQPNPARMFALTTRGSTPFAGLAFQPGDWFVFGSETRGLSEERRAGFPPSQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RIRLPMRPNNRSLNLSNTVAVVVFEAWRQ 149 >gi|256820355|ref|YP_003141634.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] gi|256581938|gb|ACU93073.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] Length = 220 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 1/144 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + + ++ V HN A++R+ F + + + + Sbjct: 28 RTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEGRFGKRLDAKIAMGAQ-KWVDVF 86 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + L + K A G E +GL + A Sbjct: 87 RYNDTQSCIDALRAQGYQIVATTPHKDAYFLNDFDISKKSAFFFGTEKEGLSEQVLSQAD 146 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + + M G ++LN+S A A+ L Sbjct: 147 TYLKIPMVGFTESLNISVAVAIVL 170 >gi|227873071|ref|ZP_03991365.1| tRNA methylase SpoU [Oribacterium sinus F0268] gi|227841052|gb|EEJ51388.1| tRNA methylase SpoU [Oribacterium sinus F0268] Length = 170 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268 ++ + K + + ++ G E G+ + + + M ++LN+SN+ Sbjct: 81 WYATTKAHKTHTEVSFSPNDYIVFGKESAGIPEEILVDNEEQCIRIPMLEEARSLNLSNS 140 Query: 269 AAVALYITQNH 279 A+ LY Sbjct: 141 VAIILYEALRQ 151 >gi|146280742|ref|YP_001170895.1| RNA methyltransferase [Pseudomonas stutzeri A1501] gi|21425310|emb|CAC79245.1| putative RNA methylase [Pseudomonas stutzeri] gi|145568947|gb|ABP78053.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas stutzeri A1501] gi|327479010|gb|AEA82320.1| RNA methyltransferase [Pseudomonas stutzeri DSM 4166] Length = 160 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 7/154 (4%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G I+R C + + L ++ E+ R Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANTGCHLHLIEPLGYELDDKRLRRAGLDYHEYATLERH 60 Query: 193 SNLTDALQKM-----HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 ++L L ++ + G + ++ +P + AL+ G E +GL P ++ Sbjct: 61 ADLPSCLARIGIDAANPDGPRLFAFTTKGSQPFHEVRYRRGDALLFGPESRGLPPDIRDA 120 Query: 248 A--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN A+A+Y Sbjct: 121 LPNEQRLRLPMRPDSRSLNLSNTVAIAVYEAWRQ 154 >gi|330874202|gb|EGH08351.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967517|gb|EGH67777.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 151 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G ++R C + + L ++ E+ Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 ++L L+K+ + +P A + G E +GL ++ + Sbjct: 61 ADLASCLEKIGNPRLFAFTTKG--SRPFHDASFAPGDAFLFGPESRGLPADILDSLSSDQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AVA+Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|315223488|ref|ZP_07865344.1| tRNA guanosine-2'-O-methyltransferase [Capnocytophaga ochracea F0287] gi|314946523|gb|EFS98515.1| tRNA guanosine-2'-O-methyltransferase [Capnocytophaga ochracea F0287] Length = 220 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 1/144 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + + ++ V HN A++R+ F + + + + Sbjct: 28 RTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEGRFGKRIDAKIAMGAQ-KWVDVF 86 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + L + K A G E +GL + A Sbjct: 87 RYNDTQSCIDALRAQGYQIVATTPHKDAYFLNDFDISKKSAFFFGTEKEGLSQQVLSQAD 146 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 + + M G ++LN+S A A+ L Sbjct: 147 TYLKIPMVGFTESLNISVAVAIVL 170 >gi|315637042|ref|ZP_07892265.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22] gi|315478578|gb|EFU69288.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22] Length = 154 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 46/148 (31%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N+G I R A +C + + + A + + Sbjct: 1 MFNIVLLEPRIPGNVGTIGRLCFALNCKLHLIKPYGFGEITEKEVRRAGLDYWYDLEVFE 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-M 251 + + + + ++ +K N G E GL ++ Sbjct: 61 YENIEDFWSKNPFNDRHFLATTKTKNVYFDAKFNVGDYFYFGREDAGLPEDLLSKSSHTC 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++N+ ++ Y Sbjct: 121 ITIPMTNEARSLNIANSVSIVAYEALRQ 148 >gi|239817363|ref|YP_002946273.1| RNA methyltransferase, TrmH family, group 2 [Variovorax paradoxus S110] gi|239803940|gb|ACS21007.1| RNA methyltransferase, TrmH family, group 2 [Variovorax paradoxus S110] Length = 153 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R A C + + +L ++ E+ R Sbjct: 1 MFHIVLVQPEIPPNTGNVIRLAANTGCTLHLVEPLGFSMDDRLLRRAGLDYHEYAEVKRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 + L+ + L++ + + L+ G+E GL P +E Sbjct: 61 AGWQALLEAERPAAERMFALTTRGTRAVHDVRFQPGDWLVFGSETSGLPPAVREGFAEPQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 121 RLRLPMREGQRSLNLSNAVAVTVFEAWRQ 149 >gi|78187067|ref|YP_375110.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273] gi|78166969|gb|ABB24067.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273] Length = 182 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 68/151 (45%), Gaps = 2/151 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++++L ++ N+G++ R+A + I+ + + ++K+A GA +P+ Sbjct: 26 DRHPVVLLLHNIRSMWNVGSLFRTADCAGIEKILLSGYTATPPRKEISKTALGADLSMPW 85 Query: 190 IRISNLTDALQKMHS--WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 I + A+ +M + + ++ S+ + + + L+LG E +G+ Sbjct: 86 EYIPDPHRAVLEMKASGRKVFGLEITEGSRPYTSLSVVDFPLCLVLGNEVQGIDDSLLRL 145 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + + G +LNVS AA VAL+ Sbjct: 146 SDGVLEIPQYGTKHSLNVSVAAGVALFELVR 176 >gi|289207239|ref|YP_003459305.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp. K90mix] gi|288942870|gb|ADC70569.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp. K90mix] Length = 154 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 48/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R A + +SA ++ E Sbjct: 1 MLHIVLYEPEIPPNTGNIIRLAANTGAALHLIHPLGFELDSARARRAGLDYHELARVQEY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 +L + + + ++ AL+ G E +GL + Sbjct: 61 DSLERWRESIRPQREFALTTRGQARYDQ--AGFQSGDALLFGPETRGLPQAVLDALPPEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SNA AV +Y Sbjct: 119 RLRLPMQPDSRSLNLSNAVAVVVYEAWRQL 148 >gi|325000927|ref|ZP_08122039.1| putative tRNA/rRNA methyltransferase [Pseudonocardia sp. P1] Length = 269 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 90/239 (37%), Gaps = 5/239 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 Y+ + + +++ + GV V L++P + LL LA L D + Sbjct: 18 YRDLTTADRRPDRPGGRGLVIAEGVVVVRRLLDSPY-PVRSLLGVPRRLAELADDLH-GT 75 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 P + T+ + VG LA+ + + ++ + V + V D N+G+ Sbjct: 76 DVPAFSTDADTMAQAVGFHLNRGVLAVADRAPAPDPAELLAGARTVAVCEGVGDHENLGS 135 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 + R+A A DGI+ S + + G + +P+ R+ A + T Sbjct: 136 LFRNAAALGVDGILLGPGCSDPLYRRSVRVSMGHVLRVPFTRLDGEWPASLDVLREAGFT 195 Query: 210 IGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + ++A +LGAEG GL + A + M + +LNV Sbjct: 196 VAALTPDAGAEPLATAGLAGGRVAWLLGAEGPGLTDEALTAADRRVRIPMATGVDSLNV 254 >gi|297571488|ref|YP_003697262.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum DSM 20595] gi|296931835|gb|ADH92643.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum DSM 20595] Length = 158 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 3/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L V P N G +R A + + A L ++ + + Sbjct: 1 MLDFVFHEPKIPGNTGNAIRLAACTGARLHLIEPLAFNFDDAHLRRAGLDYHDLADVVIH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 N A + S ++ E D L+ G E GL + T Sbjct: 61 PNWEAAKEYFGDDRRVFAFT-SHTENNYADEQYQDGDILLFGTEPTGLPDEVLNDPYLTK 119 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN++N+A++ +Y Sbjct: 120 HLRIPMLPGRRSLNLANSASIVVYEAWRQL 149 >gi|238926814|ref|ZP_04658574.1| rRNA methyltransferase family protein [Selenomonas flueggei ATCC 43531] gi|238885346|gb|EEQ48984.1| rRNA methyltransferase family protein [Selenomonas flueggei ATCC 43531] Length = 165 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VL P N G I R + + ++ L ++ + Sbjct: 1 MHIVLVEPEIPGNTGNIARLCAGTGMELHLVRPLGFSTDDKHLKRAGLDYWHLVRVHYHD 60 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMA 252 + Q+ + F + L+ G E GL + + Sbjct: 61 SFAALHQQYYEHTFYFCSTKAHHSYCD--ISYKTDDFLVFGKESAGLPESLLTDYEANTI 118 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA AV + Sbjct: 119 RIPMREEARSLNLSNAVAVVAFEALRQ 145 >gi|295107992|emb|CBL21945.1| Predicted rRNA methylase (SpoU class) [Ruminococcus obeum A2-162] Length = 166 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 D ++ G E G+ + E + + M I++LN+SN+ A+ LY Sbjct: 88 YTDVQYEDDCYIMFGKESAGIPEEILMEHKENCVRIPMINDIRSLNLSNSVAIVLYEALR 147 Query: 279 H 279 Sbjct: 148 Q 148 >gi|238764459|ref|ZP_04625407.1| Methyltransferase [Yersinia kristensenii ATCC 33638] gi|238697271|gb|EEP90040.1| Methyltransferase [Yersinia kristensenii ATCC 33638] Length = 167 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 49/158 (31%), Gaps = 10/158 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R C + + L ++ E Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHH 60 Query: 193 SNLTDALQKMHSWGFQTIGLS--------SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + L G Q+ G + + L+ G E +GL P Sbjct: 61 HDYQAFLDSEKLDGAQSTGANAARLFALTTKGTPAHSAVEYQLNDYLLFGPETRGLPPNV 120 Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E A + M +++N+SNA +V +Y Sbjct: 121 LEALPAQQKIRIPMLAASRSMNLSNAVSVVVYEAWRQL 158 >gi|157963757|ref|YP_001503791.1| RNA methyltransferase [Shewanella pealeana ATCC 700345] gi|157848757|gb|ABV89256.1| RNA methyltransferase, TrmH family, group 2 [Shewanella pealeana ATCC 700345] Length = 153 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R C + E L ++ + Sbjct: 1 MFHIALYEPEIAPNTGNIIRLIANNGCKLHLIEPLGFDLEDKKLRRAGLDYADLANVTHH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 N L+ M +P + L+ G E +GL ++ Sbjct: 61 KNFEAFLEAMAGKRIMACTTKG--SRPHSELTFKQDDVLLFGPESRGLPADIIDSIPTEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ Y Sbjct: 119 RLRIPMMSTSRSLNLSNAVAIISYEAWRQL 148 >gi|325289856|ref|YP_004266037.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM 8271] gi|324965257|gb|ADY56036.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM 8271] Length = 156 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 46/147 (31%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P N G I R D + ++ L ++ + Sbjct: 5 LNIVLVEPEIPPNTGNIARLCAVVGADLHLVKPLGFKTDDKSLKRAGLDYWHRLKMTIYE 64 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252 + D + K + + LI G E KGL P+ + Sbjct: 65 DFDDFEARNPGGKRYLATTKG--KIIYSETTFEEGCYLIFGRETKGLSPEILARYPEHLI 122 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA A+ Y Sbjct: 123 RLPMKNECRSLNLSNAVAIVTYEVFRQ 149 >gi|319795689|ref|YP_004157329.1| RNA methyltransferase, trmh family, group 2 [Variovorax paradoxus EPS] gi|315598152|gb|ADU39218.1| RNA methyltransferase, TrmH family, group 2 [Variovorax paradoxus EPS] Length = 153 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G ++R A C + + +L ++ E+ R Sbjct: 1 MFHIVLVHPEIPPNTGNVIRLAANTGCTLHLVEPLGFSMDDRLLRRAGLDYHEYAEVKRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 ++ + + + L++ + + L+ G+E GL P ++ Sbjct: 61 ADWQALIDAESAAADRMFALTTRGTRAVHDVRFQPGDWLVFGSETSGLPPAVRDGFAEPQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 121 RLRLPMREGQRSLNLSNAVAVTVFEAWRQ 149 >gi|261335662|emb|CBH18656.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 1716 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+ + ++LGAEG G+ + + G+I++LNV ++ +Y Sbjct: 1646 PMSSYQFPKRAVIVLGAEGHGIPAQLLTVLDVCVEIPQYGLIRSLNVHVTGSIVMYEYTR 1705 Query: 279 H 279 Sbjct: 1706 Q 1706 >gi|261856917|ref|YP_003264200.1| RNA methyltransferase, TrmH family, group 2 [Halothiobacillus neapolitanus c2] gi|261837386|gb|ACX97153.1| RNA methyltransferase, TrmH family, group 2 [Halothiobacillus neapolitanus c2] Length = 159 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 48/147 (32%), Gaps = 4/147 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I+R + E+ L ++ H + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGVRLHLVEPLGFSMETKALRRAGLDY--HEFAEVTVHS 61 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253 A + G + +++ L+ G E +GL P A S Sbjct: 62 DWAALRSVLDGRRLFAMTTKGSTSFYAARFEAGDVLVFGPETRGLPPHILAEFDADSRLR 121 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN A+A+Y Sbjct: 122 LPMKPDSRSLNLSNTVAIAVYEVWRQL 148 >gi|257452148|ref|ZP_05617447.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|257466059|ref|ZP_05630370.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|315917214|ref|ZP_07913454.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|317058693|ref|ZP_07923178.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|313684369|gb|EFS21204.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|313691089|gb|EFS27924.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 152 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 3/145 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P+N G I RS V + + + + +S + + Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTNTHLHLIKPLGFSLDEKQIKRSGLDYWHSVQLTVWESF 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHL 254 + L + + + ++ G E +G+ + + + Sbjct: 63 EEFLASDPNMRLFYATTKTKQRYSD--VSYKANDYIMFGPESRGIPEEILKKNPERCITI 120 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 M + ++LN+SN+AA+ LY Sbjct: 121 PMIPMGRSLNLSNSAAIILYEALRQ 145 >gi|302038465|ref|YP_003798787.1| RNA methyltransferase TrmH, group 2 [Candidatus Nitrospira defluvii] gi|300606529|emb|CBK42862.1| RNA methyltransferase TrmH, group 2 [Candidatus Nitrospira defluvii] Length = 154 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G I+R + E L ++ H Sbjct: 1 MFNVILYQPEIPPNTGNIIRLCANTGASLHLVKPLGFTLEDKQLLRAGLDY--HEFASIT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250 + G + +S+ ++ + + A + G E +GL + + + Sbjct: 59 VYESWDECVARFTGARLFAVSTKGRQRYDLVRYTEGDAFVFGPESRGLPAEILGSVSEQQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN+ AV LY Sbjct: 119 CLRVPMVPGSRSLNLSNSVAVVLYEAWRQ 147 >gi|330447116|ref|ZP_08310766.1| spoU rRNA Methylase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491307|dbj|GAA05263.1| spoU rRNA Methylase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 154 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 2/97 (2%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 H + A G + ++ + L+ G E +GL + Sbjct: 51 YHDLAHVHRHKDFAAFMEAMQGRRIFACTTKTTNFHTNAKFEQGDVLLFGPETRGLPAEF 110 Query: 245 QETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M ++LN+SNA A+ + Sbjct: 111 IASLPLEQRLRIPMQPDSRSLNLSNAVAIISFEAWRQ 147 >gi|260587422|ref|ZP_05853335.1| RNA methyltransferase, TrmH family [Blautia hansenii DSM 20583] gi|331083702|ref|ZP_08332813.1| hypothetical protein HMPREF0992_01737 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542289|gb|EEX22858.1| RNA methyltransferase, TrmH family [Blautia hansenii DSM 20583] gi|330403913|gb|EGG83465.1| hypothetical protein HMPREF0992_01737 [Lachnospiraceae bacterium 6_1_63FAA] Length = 166 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 1/99 (1%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G + + + G + ++ + K + ++ G E G+ Sbjct: 50 GMDYWKDLDVTTYINYQDFLDRNPGAKVYMATTKAPKTYVDVEYEEDCYIMFGKESAGIP 109 Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + E + + M G I++LN+SN+ A+ LY Sbjct: 110 EEILLENQETAIRIPMIGDIRSLNLSNSVAIVLYEALRQ 148 >gi|33865749|ref|NP_897308.1| SpoU family tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102] gi|33632919|emb|CAE07730.1| putative tRNA/rRNA methyltransferase (SpoU family) [Synechococcus sp. WH 8102] Length = 166 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 54/155 (34%), Gaps = 9/155 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P N G I R+ AF + + + ++ H+ S Sbjct: 10 LRVVLYEPQIPPNTGNIARTCAAFRLPLALIEPLGFCIDDRAVRRAGLDYWPHVQLSIHS 69 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 NL D L + IG S L + L+ G E GL ++ + Sbjct: 70 NL-DHLLGQLPHPHRLIGCSRHGGDSLGEFQFQHGDVLLFGREDNGLPGHVRDQCDRILT 128 Query: 254 LHMPGIIK--------ALNVSNAAAVALYITQNHF 280 + MPG + +LN+S A A+ Y + Sbjct: 129 IPMPGGVDADGQGGVRSLNLSVACALVSYTAGHQL 163 >gi|282877999|ref|ZP_06286807.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310] gi|281299834|gb|EFA92195.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310] Length = 168 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 59/159 (37%), Gaps = 3/159 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT---KRYSPSESAVLAKSAS 181 A L++VLD V +N+G++ RS AF + + E A Sbjct: 8 DFKAADKLPLVVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPPHPEIHKTALGGE 67 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 +++ + + + L++ + + +K ++ + A++ G E KG+ Sbjct: 68 DSVDWRYFASATQAVEDLRERGYCVYAIEQVVGSTKLQHLSVDRSQRYAVVFGNEVKGVH 127 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T + + G +LNVS A + ++ Sbjct: 128 QDTVDACDGCLEIPQFGTKHSLNVSVTAGIVVWEFAQKL 166 >gi|74026148|ref|XP_829640.1| hypothetical protein [Trypanosoma brucei TREU927] gi|70835026|gb|EAN80528.1| hypothetical protein, conserved [Trypanosoma brucei] Length = 1716 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+ + ++LGAEG G+ + + G+I++LNV ++ +Y Sbjct: 1646 PMSSYQFPKRAVIVLGAEGHGIPAQLLTVLDVCVEIPQYGLIRSLNVHVTGSIVMYEYTR 1705 Query: 279 H 279 Sbjct: 1706 Q 1706 >gi|82915128|ref|XP_728972.1| rRNA methylase [Plasmodium yoelii yoelii str. 17XNL] gi|23485711|gb|EAA20537.1| rRNA methylase [Plasmodium yoelii yoelii] Length = 361 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 52/338 (15%), Positives = 113/338 (33%), Gaps = 65/338 (19%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRH-------------TSQPENLFLYGV 54 K++ S + + RN + YK + +N + ++ ++ + ++YG+ Sbjct: 23 KNDHNISRTNLDRVSIPRNKKKYKLLNLYNDRKKNILXNIKRNSFLDIQNKNDIDYIYGL 82 Query: 55 HTVSAALNNPSRKIFQLLATKNAL---------ARLDWDANLPHPFPVKTVPPQTIDKIV 105 ++V + L RKI + + KNA + + +D++V Sbjct: 83 NSVYSVLKKNERKIDKAIINKNAKRNKKIHKEAYDYILNTIKEKNIQIVYKTKNEMDELV 142 Query: 106 G-----------KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 G + + + N+ + + L +V D N+G I RS Sbjct: 143 GGFPHNDIIIEATYRYMKNYRHFINNKKTTNNNNNNNNNIFICLHNVYDNMNVGNICRSI 202 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW--------- 205 + F D I ++ E K + L + M ++ Sbjct: 203 LFFGGDSIFLKRKKKKGEHKNYIKIDTPILHSSVGASEYLNFFHVNNMENFISSLKEKGF 262 Query: 206 -------GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL---- 254 +++ + + KN+K+ +ILG E KGL + + ++ Sbjct: 263 TILSTSSPKNNTRMTNFVELKNMKINKNEKVMIILGNESKGLSEDIIKNSDICIYINNLY 322 Query: 255 ------HMPGI------IKALNVSNAAAVALYITQNHF 280 + +LNV+N ++ L+ Q++ Sbjct: 323 DEKNIQPNLKNINDNLIVNSLNVNNVCSIILHHFQSNI 360 >gi|270001605|gb|EEZ98052.1| hypothetical protein TcasGA2_TC000457 [Tribolium castaneum] Length = 1259 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + K L+LG E +G+ P + G++++LNV A A+ ++ Sbjct: 1200 FRFDKKTVLVLGNEKEGIPPDLIPLLDHCIEIPQFGLVRSLNVHVAGAIVIWEYCKQ 1256 >gi|254785253|ref|YP_003072681.1| RNA methyltransferase, TrmH family, group 2 [Teredinibacter turnerae T7901] gi|237684509|gb|ACR11773.1| RNA methyltransferase, TrmH family, group 2 [Teredinibacter turnerae T7901] Length = 155 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R C + + L ++ Sbjct: 1 MFNVVLYQPEIPPNTGNIIRLCANTGCQLHLVKPLGFVLDDKRLRRAGLDYS--EWQNLK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + LS+ + + L+ G E +GL +E+ Sbjct: 59 IHENWQSLRDAAGTATIWALSTKGTATHSEARFSAGDYLVFGPETRGLPADIRESLPPEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M +++N+SNAAAV +Y Sbjct: 119 VLRIPMQAQSRSMNLSNAAAVMVYEAWRQL 148 >gi|152972456|ref|YP_001337602.1| putative tRNA/rRNA methyltransferase YibK [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238897050|ref|YP_002921796.1| putative tRNA/rRNA methyltransferase YibK [Klebsiella pneumoniae NTUH-K2044] gi|262040658|ref|ZP_06013896.1| TrmH family RNA methyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329996841|ref|ZP_08302600.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. MS 92-3] gi|150957305|gb|ABR79335.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549378|dbj|BAH65729.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259042022|gb|EEW43055.1| TrmH family RNA methyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328539252|gb|EGF65280.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. MS 92-3] Length = 157 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFSLHIIEPMGFTWDDKRLRRAGLDY--HEFTAVQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + A + + L++ D L+ G E +GL + Sbjct: 59 RHADYAAFVASAQPQRLFALTTKGTPAHSAVSYQDGDFLMFGPETRGLPASILDALPPEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|23013325|ref|ZP_00053233.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1] Length = 103 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 26/52 (50%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 IAL+LG E GL P T + L G +++LNV+ AA+ ++ Sbjct: 49 KPIALLLGNEEDGLPPATLAACDDIVTLPGSGRVQSLNVAATAAILIHELAK 100 >gi|303231925|ref|ZP_07318633.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica ACS-049-V-Sch6] gi|302513354|gb|EFL55388.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica ACS-049-V-Sch6] Length = 161 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 43/146 (29%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R A + + + ++ + N+ Sbjct: 3 IVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHENI 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254 + K + + L+ G E +GL E + + Sbjct: 63 EELYAKYPDRRYFYATTKAKHVHSD--VKFEIGDMLVFGPETRGLPESLLEGNEETCIRI 120 Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280 M ++LN+SN+ A+ Y Sbjct: 121 PMVEEARSLNLSNSVAIIAYEAMRQL 146 >gi|226305480|ref|YP_002765440.1| methyltransferase [Rhodococcus erythropolis PR4] gi|226184597|dbj|BAH32701.1| putative methyltransferase [Rhodococcus erythropolis PR4] Length = 154 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 44/149 (29%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++ P N G +R C+ + + + +G H Sbjct: 1 MFRVMFHEPRIPPNTGNAIRMVAGTGCELHL--VGPLGFDLSEPKLKRAGLDYHDLATVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATS 250 + A + ++ + L+ G E GL + E T Sbjct: 59 VHENLAAAWEAVTPARVFAFTAHATTSYADIAYQPGDVLLFGPEPTGLSEEVLADEHITE 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNAAA+ Y Sbjct: 119 RLRIPMLPGRRSLNLSNAAALVTYEAWRQ 147 >gi|78777295|ref|YP_393610.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM 1251] gi|78497835|gb|ABB44375.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM 1251] Length = 156 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 35/97 (36%), Gaps = 1/97 (1%) Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 H + + + K ++ ++ + KP + +D + G+E G+ + Sbjct: 51 YWHKLDLHVWESLEDFFKNNNIINNAHFATTKTDKPYFEANFSDGDYIFFGSETAGIPEE 110 Query: 244 TQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M ++LN++ + + LY Sbjct: 111 ILTKYKEQNITIPMTKEGRSLNLAISTGIVLYEAIRQ 147 >gi|325830711|ref|ZP_08164095.1| RNA methyltransferase, TrmH family, group 2 [Eggerthella sp. HGA1] gi|325487118|gb|EGC89561.1| RNA methyltransferase, TrmH family, group 2 [Eggerthella sp. HGA1] Length = 156 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P N G I R+ + LA++ + + +R Sbjct: 5 LSIVLVEPEIPQNTGNIARTCACTGARLHLVEPMGFRLTQKNLARAGCDYWDEVDIVRWP 64 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252 + + + + L+ G E +GL E A+ Sbjct: 65 CTEAFFEAHAADELHLFTGQARRGFGD--VAYGEGSFLVFGRESRGLPLGLIEAHASRCV 122 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+SNA AVA Y Sbjct: 123 RIPMREGLRSLNLSNAVAVAAYEALRQ 149 >gi|325264611|ref|ZP_08131341.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. D5] gi|324030273|gb|EGB91558.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. D5] Length = 165 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 1/99 (1%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G + + + G + ++ + K + ++ G E G+ Sbjct: 48 GMDYWSDLDVTTYIDFNDFMEKNPGAKIYMATTKAPKVYTEVHYEPDCFIMFGKESAGIP 107 Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + E + + M G I++LN+ N+ A+ LY Sbjct: 108 EEILVEHKENCVRIPMVGDIRSLNLGNSVAIVLYEALRQ 146 >gi|90580897|ref|ZP_01236699.1| putative rRNA methylase, SpoU family protein [Vibrio angustum S14] gi|90437968|gb|EAS63157.1| putative rRNA methylase, SpoU family protein [Vibrio angustum S14] Length = 154 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 2/97 (2%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 H + A G + ++ + L+ G E +GL + Sbjct: 51 YHDLAHVHRHKDFAAFMQAMEGRRIFACTTKTTNFHTNAKFEQGDVLLFGPETRGLPAEF 110 Query: 245 QETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M ++LN+SNA A+ + Sbjct: 111 IASLPLEQRLRIPMQPDSRSLNLSNAVAIISFEAWRQ 147 >gi|313892393|ref|ZP_07825985.1| RNA methyltransferase, TrmH family, group 2 [Dialister microaerophilus UPII 345-E] gi|329121325|ref|ZP_08249951.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM 19965] gi|313119252|gb|EFR42452.1| RNA methyltransferase, TrmH family, group 2 [Dialister microaerophilus UPII 345-E] gi|327469734|gb|EGF15200.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM 19965] Length = 170 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + K G + ++ +K + L+ G E KGL + Sbjct: 50 YWKFLDIHIHKNFESVKQMLKGKRFFYNTTKAKHVYTDISYKEDDVLVFGKETKGLPEEL 109 Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E S + M ++LN+SNA A+ Sbjct: 110 LLENQDSCIRIPMVEEARSLNLSNAVAIVALEALRQ 145 >gi|297195464|ref|ZP_06912862.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486] gi|297152803|gb|EFH31995.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486] Length = 272 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 89/221 (40%), Gaps = 5/221 (2%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 G + A LL+ K + D P PV V P +++ G Sbjct: 35 GLFIAEGEKVIRRARQTGYEMRSMLLSAK--WIDVMRDVIDEVPAPVFAVDPALAERVTG 92 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 LA L + + ++ ++V++ VND NIGAI RSA A D ++ + Sbjct: 93 YHVHRGALASMQRKPLPDAAELLGTARRVVVMESVNDHTNIGAIFRSAAALGMDAVLLSP 152 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + K + GA+ +PY R+ L+ + GF+ + L+ D K E Sbjct: 153 DCADPLYRRSVKVSMGAVFSVPYARLDAWPKGLEAVREAGFRLLALTPDEKATSIDEAAP 212 Query: 227 DK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + +AL+LGAEG GL K A + M + +LN Sbjct: 213 HRLERVALMLGAEGDGLSTKALMAADEWVRIPMSHGVDSLN 253 >gi|239946879|ref|ZP_04698632.1| rRNA methylase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921155|gb|EER21179.1| rRNA methylase [Rickettsia endosymbiont of Ixodes scapularis] Length = 189 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 35/91 (38%) Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + + I + K K+A+ G EG G+ + ++ Sbjct: 98 CMDHLEKESFVSVITSPHIKGYKNVVLHKHDYTKYKKLAVWFGNEGVGISKTAVKRSSFC 157 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ++ M GII++LN+ ++ + LY K Sbjct: 158 INIPMYGIIESLNLGTSSGIVLYEIAKQRHK 188 >gi|154252688|ref|YP_001413512.1| tRNA/rRNA methyltransferase SpoU [Parvibaculum lavamentivorans DS-1] gi|154156638|gb|ABS63855.1| tRNA/rRNA methyltransferase (SpoU) [Parvibaculum lavamentivorans DS-1] Length = 175 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 24/63 (38%) Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L++G E G+ + + A + + M ++LN++ AA++ L Sbjct: 101 HNNFMDFTFRPGDTLLIGRESAGVPAEVHDAADARVTIPMRPPARSLNMAVAASMVLTEA 160 Query: 277 QNH 279 Sbjct: 161 LRQ 163 >gi|332139948|ref|YP_004425686.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327549970|gb|AEA96688.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] Length = 154 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + + ++ H Sbjct: 1 MLDIVLYQPEIPPNTGNIIRLCANSGFMLHLIEPLGFDWDDKRVRRAGLDY--HEFAHVK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + + ++ K ALI G E +GL ++ Sbjct: 59 RHASLDAYLEDAKPNRVFACTTKGKAFHSDVSYQKGDALIFGPETRGLPDDYIQSLPPEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y + F Sbjct: 119 RVRIPMLPDSRSMNLSNAVSVFVYESWRQF 148 >gi|260599907|ref|YP_003212478.1| putative rRNA methylase [Cronobacter turicensis z3032] gi|260219084|emb|CBA34439.1| Uncharacterized tRNA/rRNA methyltransferase yibK [Cronobacter turicensis z3032] Length = 157 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H + Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFTAVM 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + A + L++ D L+ G E +GL + Sbjct: 59 RHRDYAAFLEAETPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDVLPPEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|148550127|ref|YP_001270229.1| RNA methyltransferase [Pseudomonas putida F1] gi|148514185|gb|ABQ81045.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida F1] gi|313501027|gb|ADR62393.1| RNA methyltransferase [Pseudomonas putida BIRD-1] Length = 153 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G I+R C + + L ++ E+ R Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANSGCALHLIEPISFELDDKRLRRAGLDYHEYATLKRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 +L L+ + ++ P + A + G E +GL + ++ A Sbjct: 61 ESLAGCLES--LGNPRLFAFTTKGSHPFHEVAFQPGDAFLFGPESRGLPAEVLDSLPAEH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV +Y Sbjct: 119 RLRLPMRPGCRSLNLSNTVAVTVYEAWRQ 147 >gi|148977226|ref|ZP_01813853.1| rRNA methylase, SpoU family protein [Vibrionales bacterium SWAT-3] gi|145963508|gb|EDK28771.1| rRNA methylase, SpoU family protein [Vibrionales bacterium SWAT-3] Length = 159 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 5/149 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN- 194 + L N G I+R + + E + ++ + R N Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDFEEKKVRRAGLDYHDLARVKRHKNL 63 Query: 195 --LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + L+ ++ ++ + L+ G E +GL + E+ Sbjct: 64 EAFIEYLENEREGDYRIFACTTKTTGHHVDAKFQQGDVLMFGPETRGLPAEFIESMPMEQ 123 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 RIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152 >gi|148268327|ref|YP_001247270.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|150394389|ref|YP_001317064.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|257793786|ref|ZP_05642765.1| RNA methyltransferase [Staphylococcus aureus A9781] gi|258420770|ref|ZP_05683709.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A9719] gi|295406162|ref|ZP_06815970.1| RNA methyltransferase [Staphylococcus aureus A8819] gi|297244915|ref|ZP_06928792.1| RNA methyltransferase [Staphylococcus aureus A8796] gi|147741396|gb|ABQ49694.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus JH9] gi|149946841|gb|ABR52777.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus JH1] gi|257787758|gb|EEV26098.1| RNA methyltransferase [Staphylococcus aureus A9781] gi|257843374|gb|EEV67784.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A9719] gi|294969159|gb|EFG45180.1| RNA methyltransferase [Staphylococcus aureus A8819] gi|297177995|gb|EFH37243.1| RNA methyltransferase [Staphylococcus aureus A8796] gi|315130500|gb|EFT86486.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus CGS03] gi|329727203|gb|EGG63659.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus 21172] Length = 156 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 1/149 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ +L ++ E + Sbjct: 1 MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 ++ + + + + + + I G E GL +E + Sbjct: 61 HDSIEAFFEATNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDT 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN AA+ +Y Sbjct: 121 TLRIPMSEHIRSLNLSNTAALLIYEALRQ 149 >gi|27377595|ref|NP_769124.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110] gi|27350740|dbj|BAC47749.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110] Length = 152 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 48/145 (33%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + P N G ILR I P ++ L+ + R + Sbjct: 3 IALFQPDIPQNTGTILRLCACLGLAAHIIEPAGFPVSDRHFRRAGMDYLDQVSITRHVSW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + G + + ++ + L+ G E G+ E A + + Sbjct: 63 PQFEEWRAAQGCRLLLFTTKAATDYRDFRYQTSDILLFGRESAGVTDAVVEAADARLVIP 122 Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280 + +++LNV+ AA+A Sbjct: 123 IAPGLRSLNVAMTAAMAAGEALRQI 147 >gi|296332315|ref|ZP_06874776.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673592|ref|YP_003865264.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150233|gb|EFG91121.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411836|gb|ADM36955.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii str. W23] Length = 157 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + + ++ +L ++ E + + Sbjct: 1 MALHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQET-AT 249 +L + ++ F I + ++ + G E GL + Sbjct: 61 HDSLEELFEEYQKGQFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNNMD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 L M +++LN+SN AA+ +Y Sbjct: 121 RCLRLPMTEHVRSLNLSNTAAILVYEALRQQN 152 >gi|114569286|ref|YP_755966.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10] gi|114339748|gb|ABI65028.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10] Length = 148 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 53/145 (36%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +V + P N+GA +R A F + I P + ++A I +R ++ Sbjct: 3 IVFFQPDIPQNLGAAMRVAACFGAELDIIEPCAFPLTDKGIRRAAMDYQAAISPLRHASW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + + ++ L L+ G E G+ + AT + Sbjct: 63 KAYQASAEASAGRLVLFTTRGAGKLWDFSFRPDDRLLFGRESAGVPDDVHDAATCRVKIP 122 Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280 + +++LNV+ +A +AL Sbjct: 123 IREGMRSLNVTVSAGIALAEASRQL 147 >gi|188532254|ref|YP_001906051.1| putative tRNA/rRNA methyltransferase YibK [Erwinia tasmaniensis Et1/99] gi|188027296|emb|CAO95139.1| rRNA methyltransferase CspR (SpoU class) [Erwinia tasmaniensis Et1/99] Length = 157 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFAWDDKRLRRAGLDY--HEFAAIR 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + L++ L+ G E +GL + + A Sbjct: 59 HHASYEAFAASETPRRLFALTTKGTPAHSAVSYQAGDYLLFGPETRGLPARVLDALPAQQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|320332674|ref|YP_004169385.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus maricopensis DSM 21211] gi|319753963|gb|ADV65720.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus maricopensis DSM 21211] Length = 217 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 53/152 (34%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L ++++ VN PHN AILRS A + A S S Sbjct: 15 QRQPTLTVLMEEVNKPHNFSAILRSCDAVGVWEAHAVPPKNGKLPTYNATSGSAEKWVRV 74 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + S + ++LGAE G+ + + A Sbjct: 75 QSHADAPSAVRELQGRGFQVLATHLSARSVDYRELDYTRPTCVLLGAEKWGVSEEAADAA 134 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M G++++LNVS A A L+ Q Sbjct: 135 DANVVIPMLGMVQSLNVSVACATILFEAQRQR 166 >gi|296425385|ref|XP_002842222.1| hypothetical protein [Tuber melanosporum Mel28] gi|295638483|emb|CAZ86413.1| unnamed protein product [Tuber melanosporum] Length = 420 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 62/287 (21%), Positives = 101/287 (35%), Gaps = 62/287 (21%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKN------ALARLDWDANLPHPFPVKTVPPQTID 102 ++YG V AAL R++++L A R +L V+ V + + Sbjct: 128 EWIYGTSVVEAALRCKRRELYKLYVYAGDNRTPAARERDRDMKDLARTAGVEIVDEEDMG 187 Query: 103 KI--VGKEAVHQGLALETAPLLSPTL---------------------------------- 126 K+ + H G LE P+ + Sbjct: 188 KMDSMSNSRPHNGYVLECLPIKRTPIIALKGVQEDRNFFTLEMARHYFDGRPVTEHYYDK 247 Query: 127 ----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 D R +++LD + DP N+GAILRSA D + T R S V K+++G Sbjct: 248 IRCRDPKRRYPFVLMLDEILDPGNMGAILRSAYFLGVDAVTITARNCARLSPVCLKASAG 307 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ------------EIKNDKIA 230 A E +P + + + G+ K + +K + Sbjct: 308 AAELLPIFEHAKSERMITQSTENGWTVYAAIPPPTKNQARRDRYVYAPEVAEVVKEGPVV 367 Query: 231 LILGAEGKGLRPKTQETATSMAHL---HMPGI-IKALNVSNAAAVAL 273 L++G EG+GLRP ++ A L + +LNVS A A+ Sbjct: 368 LLVGNEGEGLRPPLKKLAKFCVSLVKGPGTDSLVDSLNVSVATALLC 414 >gi|255544240|ref|XP_002513182.1| 23S rRNA methyltransferase, putative [Ricinus communis] gi|223547680|gb|EEF49173.1| 23S rRNA methyltransferase, putative [Ricinus communis] Length = 234 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 50/157 (31%), Gaps = 9/157 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P N G I R+ A + + +S L ++ ++ Sbjct: 53 LQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDSTKLKRAGLDYWPYVVVKVHE 112 Query: 194 NLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS- 250 + T+ + + + LI G+E GL P+ + + Sbjct: 113 SWTEFQDYFRQQEGDKRLLAFTKRGTATHSEFLYRKGDYLIFGSETSGLPPEALQDCKNE 172 Query: 251 -----MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 + M ++ LN+S + +ALY Sbjct: 173 PFGGGTIRIPMIETYVRCLNLSVSVGIALYEASRQLN 209 >gi|206578587|ref|YP_002236029.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella pneumoniae 342] gi|288933036|ref|YP_003437095.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella variicola At-22] gi|290511829|ref|ZP_06551197.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. 1_1_55] gi|206567645|gb|ACI09421.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella pneumoniae 342] gi|288887765|gb|ADC56083.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella variicola At-22] gi|289775619|gb|EFD83619.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. 1_1_55] Length = 157 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFSLHIIEPMGFTWDDKRLRRAGLDY--HEFTAVQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + A + + L++ D L+ G E +GL + Sbjct: 59 RHADYAAFLASAQPQRLFALTTKGTPAHSAVSYQDGDFLMFGPETRGLPASILDALPPEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|189502158|ref|YP_001957875.1| hypothetical protein Aasi_0766 [Candidatus Amoebophilus asiaticus 5a2] gi|189497599|gb|ACE06146.1| hypothetical protein Aasi_0766 [Candidatus Amoebophilus asiaticus 5a2] Length = 177 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 3/157 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++VLD++ HNIGA R A AF + I + + K+A GA Sbjct: 16 EFKNALKIPLILVLDNLRSMHNIGAAFRIADAFLLEKIYLCGITAQPPHREIHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQT---IGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 E + + + + LQ + + G+ Q N+K AL+ G E G++ Sbjct: 76 ETVIWEYVPDTYTLLQSLKTKGYLIVALEQTDESIPLQSYQINSNNKCALVFGNEVFGIQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + G +LNVS + +A++ Sbjct: 136 EEALAACDLALEIPQHGTKHSLNVSVSMGIAIWELTK 172 >gi|157373406|ref|YP_001472006.1| RNA methyltransferase [Shewanella sediminis HAW-EB3] gi|157315780|gb|ABV34878.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sediminis HAW-EB3] Length = 154 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R C + E L ++ + R Sbjct: 1 MFHIALFEPEIAPNTGNIIRLCANNGCQLHLIEPMGFDLEEKKLRRAGLDYSDLTRVTRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + L M +P + + L+ G E +GL + E+ T Sbjct: 61 KDFESFLAAMDGKRIMACTTKG--SRPHTELAYEKEDVLLFGPETRGLPIEIIESLPTTQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ Y Sbjct: 119 RLKIPMTANSRSLNLSNAVAIISYEAWRQI 148 >gi|260063174|ref|YP_003196254.1| spoU protein [Robiginitalea biformata HTCC2501] gi|88783268|gb|EAR14440.1| spoU protein [Robiginitalea biformata HTCC2501] Length = 217 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 45/154 (29%), Gaps = 1/154 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R + + L V HN A++RS F + + + Sbjct: 27 NRTRYITVALQDVYQLHNASAVIRSCDIFGIQDAHLIEERFGNRLDKNIAMGAQ-RWVDI 85 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + S E + +A+ G E +GL A Sbjct: 86 HRYKSTDACVHALREKGYRIVATSPHQGSVSPEALPLDTPVAVFFGTEKEGLSEGLIRQA 145 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + M G ++LNVS AAA+ L K Sbjct: 146 DAAIQIPMVGFTESLNVSVAAAIVLRELGTRLRK 179 >gi|88705266|ref|ZP_01102977.1| tRNA/rRNA methyltransferase (SpoU) [Congregibacter litoralis KT71] gi|88700356|gb|EAQ97464.1| tRNA/rRNA methyltransferase (SpoU) [Congregibacter litoralis KT71] Length = 154 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 47/149 (31%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L + L P N G I+R SC + E L ++ Sbjct: 1 MLHVALYEPEIPPNTGNIMRLCANTSCPLHLIKPLGFSLEDKQLRRAGLDY--REFAHVQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 ++ + + LS+ + L+ G E +GL + Sbjct: 59 THDSLDALIQTLHRPRIWTLSTRGTRNYTDADFQKGDVLLFGPETRGLPATVLDELGVHR 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNAAA+ LY Sbjct: 119 CLRVPMYPDSRSLNLSNAAALVLYEGLRQ 147 >gi|115522972|ref|YP_779883.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris BisA53] gi|115516919|gb|ABJ04903.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris BisA53] Length = 153 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 52/144 (36%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + P N G ILR + I P ++ L+ + R + Sbjct: 3 IALFQPDIPQNTGTILRLCACLDVEAHIIEPAGFPVSDRNFRRAGMDYLDQVSLTRHDSW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 T Q G + I L++ + L+LG E G+ + A + + Sbjct: 63 TKFEQWRRDQGCRLILLTTKGLISYFEYRYAPSDVLMLGRESAGVPDEVAAVADARLAIP 122 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 + +++LN++ AAA+ + Sbjct: 123 VKPGLRSLNIAVAAAMVVGEALRQ 146 >gi|302382926|ref|YP_003818749.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides ATCC 15264] gi|302193554|gb|ADL01126.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides ATCC 15264] Length = 268 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 61/273 (22%), Positives = 107/273 (39%), Gaps = 16/273 (5%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIF 69 I ++ D A++ Y+ ++ + R G + L + R Sbjct: 3 IETIDDPDDARI----AAYRDIRERDLTGR----QGLFIAEGEVVLRTLLSDASLCRPRS 54 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-- 127 L+A +P PV V +D+IVG +H+G+ L+ TLD Sbjct: 55 VLIAANRVDGLRGLLETVPAGTPVFAVGQDVLDRIVGFP-LHRGILALGEKPLARTLDAV 113 Query: 128 --AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + +++ + + NIG + R+A AF ++T R + + GA+ Sbjct: 114 LADLPEQAVVVAASEIGNHDNIGGLYRNAAAFGAAAVLTDDRCGDPFYRKSIRVSVGAVL 173 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 P +L + + + F+ I LS + +PL+ + AL+LG+EG GL Sbjct: 174 RTPGAAAPSLEALVDALEAARFEVIALSPSAIEPLKGLKPGGRRALLLGSEGPGLPASVM 233 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 T + M G +LNVS +A+ LY Sbjct: 234 AR-TRTVGIPMAGGFDSLNVSVTSALGLYQLTQ 265 >gi|167036092|ref|YP_001671323.1| RNA methyltransferase [Pseudomonas putida GB-1] gi|166862580|gb|ABZ00988.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida GB-1] Length = 153 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G I+R C + + L ++ E+ R Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANSGCHLHLIEPISFELDDKRLRRAGLDYHEYATLKRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 +L L+ + ++ P + A + G E +GL + ++ A Sbjct: 61 ESLAGCLES--LGNPRLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEVLDSLPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV +Y Sbjct: 119 RLRLPMRPGCRSLNLSNTVAVTVYEAWRQ 147 >gi|159490732|ref|XP_001703327.1| RNA methylase-like protein CR004 [Chlamydomonas reinhardtii] gi|28207743|gb|AAO32614.1| CR004 protein [Chlamydomonas reinhardtii] gi|158280251|gb|EDP06009.1| RNA methylase-like protein CR004 [Chlamydomonas reinhardtii] Length = 316 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 56/153 (36%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R +L +++ + D N+ A+ R+A A + + +A Sbjct: 88 RTFTVLPIVEGLYDMGNLAAVCRTADALGYGAVHAVNKADGKFKMSQRTAAGADKWLDVK 147 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S + + S +++ A++LG E G+ + A Sbjct: 148 AWDSTGECLAAMKAAGYQIVTTHLTQSSITIQEVDWTRPTAVVLGNEKFGVSAEAVAAAD 207 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + A + M G++++ N+S A A+ LY Q + Sbjct: 208 ACAIIPMTGMVESFNISVANALILYEAQQQRIR 240 >gi|229489465|ref|ZP_04383328.1| RNA methyltransferase, TrmH family, group 2 [Rhodococcus erythropolis SK121] gi|229323562|gb|EEN89320.1| RNA methyltransferase, TrmH family, group 2 [Rhodococcus erythropolis SK121] Length = 166 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 43/146 (29%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++ P N G +R C+ + + + +G H + Sbjct: 16 LMFHEPRIPPNTGNAIRMVAGTGCELHL--VGPLGFDLSEPKLKRAGLDYHDLATVTVHE 73 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATSMAH 253 + ++ + L+ G E GL + E T Sbjct: 74 NLTAAWEAVTPARVFAFTAHATTSYADIAYQPGDVLLFGPEPTGLSEEVLADEHVTERLR 133 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNAAA+ Y Sbjct: 134 IPMLPGRRSLNLSNAAALVTYEAWRQ 159 >gi|298492564|ref|YP_003722741.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708] gi|298234482|gb|ADI65618.1| RNA methyltransferase, TrmH family, group 1 ['Nostoc azollae' 0708] Length = 245 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 4/60 (6%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN----HFAK 282 +ALI G E +GL + A + + +LN++ A ++ Y AK Sbjct: 108 KPVALIFGREDRGLSNEELNYAHKLIFIPTNPQYPSLNLATAVSICCYELSQYELSQLAK 167 >gi|154685355|ref|YP_001420516.1| hypothetical protein RBAM_009210 [Bacillus amyloliquefaciens FZB42] gi|154351206|gb|ABS73285.1| CspR [Bacillus amyloliquefaciens FZB42] Length = 157 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 52/152 (34%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + ++ +L ++ E + + Sbjct: 1 MALHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWEFVKVVY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQET-AT 249 +L + + + F I ++ + G E GL + E Sbjct: 61 HDSLEELFEAYENGKFFFITKFGQKPHTSFDYSNTEEDFFFVFGRETSGLPKELIENNMD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 L M +++LN+SN AA+ +Y Sbjct: 121 RCLRLPMTEHVRSLNLSNTAAILVYEALRQQN 152 >gi|260172783|ref|ZP_05759195.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2] gi|315921069|ref|ZP_07917309.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2] gi|313694944|gb|EFS31779.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2] Length = 175 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 67/159 (42%), Gaps = 3/159 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 V L++VLD + HNIG++ R++ AF + I + + K+A GA Sbjct: 16 EFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + ++N D + + + G+ + + E K K A+++G E KG++ Sbjct: 76 FTVDWKYVNNAVDVVDNLKNEGYIVYSVEQAEGSIMLDELQLDKTKKYAIVMGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + + G +LNVS + ++ Sbjct: 136 QEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFKKL 174 >gi|256370817|ref|YP_003108642.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri SMDSEM] gi|256009609|gb|ACU52969.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri SMDSEM] Length = 242 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 7/237 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF------PVKTVPPQTIDKI 104 +YG++T+ A+ + + L KN + + Sbjct: 2 IYGINTLYEAIKSKIKIYKIYLNKKNKKNKKIKKIIKYSKKNKISLNEIINFKKIEKKNH 61 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 G A+ + L + P + LL++LD + D N G+I+R++ D II Sbjct: 62 QGVFAIIDHIQLLKIENIIPMIYNSGKIPLLIILDSITDVRNFGSIVRTSACTGVDAIII 121 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + S + ++ K++SG + IP + N+ ++ + S+G Q I ++ + + Sbjct: 122 ATKNSVTINSDSIKTSSGGIFKIPICKEKNIIKIIRYLKSFGIQVIAVTEKTDNICYKFN 181 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLH-MPGIIKALNVSNAAAVALYITQNHF 280 + A ILG+E KG+ K + L + + +LNVS A LY T Sbjct: 182 YKNPTAFILGSEQKGISKKYLSLCNNTVKLPLIKNSLTSLNVSVACGAILYETIRQR 238 >gi|221054155|ref|XP_002261825.1| SpoU rRNA Methylase [Plasmodium knowlesi strain H] gi|193808285|emb|CAQ38988.1| SpoU rRNA Methylase, putative [Plasmodium knowlesi strain H] Length = 264 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 2/152 (1%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D + Q+ + + ++ NIG+I+RS VAF I R + + Sbjct: 21 DPTKCPQMYVAIYNIGKKKNIGSIVRSCVAFGVSKIFVVSRKRNEINFFGQMGTCKYITI 80 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + + L L + + + N A + G EG G+ +T Sbjct: 81 EYFSNMKELRIHLANNNILLYACEITDRAIAVTRTPFV-NKDTAFLFGNEGTGINDETLS 139 Query: 247 TATSMAHLHMPGI-IKALNVSNAAAVALYITQ 277 + ++ G +LNVS + A+ L+ Sbjct: 140 YCDKIIYIPQYGNGTCSLNVSVSCAIILHHFA 171 >gi|30690444|ref|NP_198040.2| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] gi|38603878|gb|AAR24684.1| At5g26880 [Arabidopsis thaliana] gi|110740973|dbj|BAE98581.1| hypothetical protein [Arabidopsis thaliana] gi|110743259|dbj|BAE99520.1| hypothetical protein [Arabidopsis thaliana] gi|332006236|gb|AED93619.1| protein agamous-like 26 [Arabidopsis thaliana] Length = 263 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 9/157 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P N G I R+ A + + + A + ++ + S Sbjct: 82 LHVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDARVKRAGLDYWPFVVVKAHS 141 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETATS- 250 + + + + ++ + + + L+ G+E GL P+ Sbjct: 142 SWAEFQEYFRLQEGEKRMIAFTKRGTRIHSDFSYRSGDYLLFGSETSGLPPEALSDCNHE 201 Query: 251 -----MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 + M ++ LN+S + +ALY Sbjct: 202 PYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQLN 238 >gi|325068666|ref|ZP_08127339.1| SpoU family rRNA methyltransferase [Actinomyces oris K20] Length = 152 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 6/150 (4%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L ++ P N GA +R + + + ++ + + Sbjct: 1 MLHVIFFEPRIPGNTGAAIRLSANTGSMLHLVDPLFDMDDAKLRRAGLD----YHDLANT 56 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + +S +++ Q AL+ G E GL + + ++ Sbjct: 57 RVHATWQECLEQIPGRIYAFTSHTERLYTQVDWRGDDALLFGPEPTGLPQEILDHPRVSA 116 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN++N+AA+ LY Sbjct: 117 HLRIPMVEGNRSLNLANSAAIGLYEAWRSL 146 >gi|309808395|ref|ZP_07702295.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 01V1-a] gi|308168363|gb|EFO70481.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 01V1-a] Length = 159 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 65/140 (46%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++LD++ DP N+G I+R+A A DG+I + + ++ + +S G+ H+ ++ Sbjct: 17 WVILDNLTDPGNVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQTDI 76 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 L ++ + + L ++ LI+G E G+ + Q ++ Sbjct: 77 EQVLLDFKNNGLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYI 136 Query: 255 HMPGIIKALNVSNAAAVALY 274 + G ++LN + AA + +Y Sbjct: 137 PIKGKAESLNAAVAAGIMIY 156 >gi|167758642|ref|ZP_02430769.1| hypothetical protein CLOSCI_00982 [Clostridium scindens ATCC 35704] gi|167663838|gb|EDS07968.1| hypothetical protein CLOSCI_00982 [Clostridium scindens ATCC 35704] Length = 163 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 3/148 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I R+ VA + + L ++ + + Sbjct: 1 MLNIVLHEPEIPANTGNIGRTCVAANTRLHLIEPLGFRLNEKNLKRAGMDYWDKLDVTTY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 + D +++ + + ++ G E G+ + + Sbjct: 61 IDYDDFIRRNPNAKIYMATTKATKAYTD--VEYEPDCYIMFGKESAGIPEEILVKHKDDC 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+ N+ A+ LY Sbjct: 119 IRIPMVPDIRSLNLGNSVAIVLYEALRQ 146 >gi|153853541|ref|ZP_01994921.1| hypothetical protein DORLON_00910 [Dorea longicatena DSM 13814] gi|149753696|gb|EDM63627.1| hypothetical protein DORLON_00910 [Dorea longicatena DSM 13814] Length = 163 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 3/148 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I R+ VA + + L ++ EH+ Sbjct: 1 MLNIVLHEPEIPANTGNIGRTCVATNTRLHLIEPLGFRLNEKNLKRAGMDYWEHLDVRTY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 + D L+K + K + ++ G E G+ + E Sbjct: 61 IDYNDFLEKNPGAKIYMATTKA--PKVYTEVNYEPDCYIMFGKESAGIPEEILVEHKEDC 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G I++LN+ N+ A+ LY Sbjct: 119 VRIPMVGDIRSLNLGNSVAIVLYEALRQ 146 >gi|78779323|ref|YP_397435.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9312] gi|78712822|gb|ABB49999.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus str. MIT 9312] Length = 160 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 9/68 (13%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---------IIKALNVSNAAAVAL 273 + L+ G E GL + + + + MP +++LN+S A +A+ Sbjct: 88 FKFQEDDVLLFGREDSGLPDLIIDNSDYLISIFMPNLQTENNDQKGVRSLNLSVACGIAI 147 Query: 274 YITQNHFA 281 Y Sbjct: 148 YEAHKQIN 155 >gi|123968533|ref|YP_001009391.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus str. AS9601] gi|123198643|gb|ABM70284.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus str. AS9601] Length = 160 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 9/68 (13%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---------IIKALNVSNAAAVAL 273 L+ G E GL + + + + MP +++LN+S A +A+ Sbjct: 88 FKFKQDDILLFGREDSGLPDSIIDKSDFLISIFMPNIQTGNNDQKGVRSLNLSVACGIAI 147 Query: 274 YITQNHFA 281 Y Sbjct: 148 YEAYKQIN 155 >gi|125550794|gb|EAY96503.1| hypothetical protein OsI_18405 [Oryza sativa Indica Group] Length = 168 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 1/99 (1%) Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + + + L A K + + P+ A + G EG Sbjct: 51 HGATSHLRFRHFASLPLARAYLKDERGCDICGVEITHNALPVTAHPFRRSTAFLFGNEGT 110 Query: 239 GLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALYIT 276 GL K E ++ G +LNV+ AA++ L+ Sbjct: 111 GLSQKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHF 149 >gi|115462009|ref|NP_001054604.1| Os05g0141400 [Oryza sativa Japonica Group] gi|46391115|gb|AAS90642.1| putative OBP33PEP [Oryza sativa Japonica Group] gi|113578155|dbj|BAF16518.1| Os05g0141400 [Oryza sativa Japonica Group] gi|215701017|dbj|BAG92441.1| unnamed protein product [Oryza sativa Japonica Group] gi|215741370|dbj|BAG97865.1| unnamed protein product [Oryza sativa Japonica Group] gi|222630148|gb|EEE62280.1| hypothetical protein OsJ_17068 [Oryza sativa Japonica Group] Length = 224 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 1/99 (1%) Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + + + L A K + + P+ A + G EG Sbjct: 53 HGATSHLRFRHFASLPLARAYLKDERGCDICGVEITHNALPVTAHPFRRSTAFLFGNEGT 112 Query: 239 GLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALYIT 276 GL K E ++ G +LNV+ AA++ L+ Sbjct: 113 GLSQKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHF 151 >gi|78189054|ref|YP_379392.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii CaD3] gi|78171253|gb|ABB28349.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii CaD3] Length = 184 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 70/149 (46%), Gaps = 2/149 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++++L ++ N+G++ R+A + + II + + ++K+A GA E +P+ Sbjct: 32 HPIVLMLHNIRSMWNVGSMFRTADSAGIERIILSGYTATPPRKEISKTALGADESVPWSY 91 Query: 192 ISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + ++K+ + + ++ S+ + + I L++G E GL + + Sbjct: 92 TEDAYKTVRKLQAEGVKVCALEIAEGSRAHSSICMADFPICLLVGNEVDGLDDELLQACD 151 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ + G +LNV+ AA VAL+ Sbjct: 152 AVLEIAQYGTKHSLNVAVAAGVALFELVR 180 >gi|332978452|gb|EGK15166.1| RNA methyltransferase [Psychrobacter sp. 1501(2011)] Length = 183 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 11/159 (6%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL H P+N G+ +R + E L ++ E+ Sbjct: 1 MTIHIVLVHPRIPNNTGSAIRLCANTGAQLHLVEPLGFDLEDKKLRRAGLDYHEYANMKV 60 Query: 192 ISNLTD---------ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 N + + + ++ + + IAL+ G+E GL Sbjct: 61 HKNWQAAKEALKAAGCERMVALTTKLSHPFYEYDFSSSNEDSQQENIALVFGSETAGLAD 120 Query: 243 KTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +E A + L M ++LN++N+ ++ LY Sbjct: 121 DIREDIGADNWLRLPMLPDSRSLNLANSISICLYEVWRQ 159 >gi|86147915|ref|ZP_01066220.1| rRNA methylase, SpoU family protein [Vibrio sp. MED222] gi|218710836|ref|YP_002418457.1| tRNA/rRNA methyltransferase [Vibrio splendidus LGP32] gi|85834342|gb|EAQ52495.1| rRNA methylase, SpoU family protein [Vibrio sp. MED222] gi|218323855|emb|CAV20216.1| Hypothetical tRNA/rRNA methyltransferase [Vibrio splendidus LGP32] Length = 159 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 5/149 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN- 194 + L N G I+R + + E + ++ + R N Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDFEEKKVRRAGLDYHDLARVKRHKNL 63 Query: 195 --LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + L+ F+ ++ + L+ G E +GL + E+ Sbjct: 64 EAFLEYLENEREGDFRIFACTTKTTGHHVDAKFQQGDVLMFGPETRGLPAEFIESMPMEQ 123 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ + Sbjct: 124 RIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152 >gi|84393040|ref|ZP_00991806.1| rRNA methylase, SpoU family [Vibrio splendidus 12B01] gi|84376292|gb|EAP93174.1| rRNA methylase, SpoU family [Vibrio splendidus 12B01] Length = 159 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALN 264 ++ ++ + L+ G E +GL + E+ + M ++LN Sbjct: 78 YRIFACTTKTTGHHVDAKFQQGDVLMFGPESRGLPAEFIESMPMEQRIRIPMMPEARSLN 137 Query: 265 VSNAAAVALYITQNH 279 +SNA A+ + Sbjct: 138 LSNAVAIIAFEAWRQ 152 >gi|126452601|ref|YP_001064786.1| RNA methyltransferase [Burkholderia pseudomallei 1106a] gi|134279430|ref|ZP_01766142.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 305] gi|242315209|ref|ZP_04814225.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 1106b] gi|126226243|gb|ABN89783.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 1106a] gi|134248630|gb|EBA48712.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 305] gi|242138448|gb|EES24850.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 1106b] Length = 179 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 46/162 (28%), Gaps = 2/162 (1%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 S +VL P N G ++R + P + A + ++ Sbjct: 11 HTHSHAFHRSNRIMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRA 70 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 E+ + + + ++ + GAE +G Sbjct: 71 GLDYHEYAQMRVHRDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRG 130 Query: 240 LRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L P + L M ++LN+SN AV ++ Sbjct: 131 LAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 172 >gi|2191177|gb|AAB61063.1| belongs to the SPOU family of rRNA methylases [Arabidopsis thaliana] Length = 271 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 14/109 (12%), Positives = 29/109 (26%), Gaps = 7/109 (6%) Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 A + + ++ ++ L+ G+E G Sbjct: 138 VKRAGGRKTNDSFYKKRNKDTFKIATITSNWVAENNGYNLMQDFSYRSGDYLLFGSETSG 197 Query: 240 LRPKTQETATS------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 L P+ + M ++ LN+S + +ALY Sbjct: 198 LPPEALSDCNHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQLN 246 >gi|229918148|ref|YP_002886794.1| RNA methyltransferase, TrmH family, group 2 [Exiguobacterium sp. AT1b] gi|229469577|gb|ACQ71349.1| RNA methyltransferase, TrmH family, group 2 [Exiguobacterium sp. AT1b] Length = 157 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +V+ P N G + R+ A + + ++ +L ++ + + Sbjct: 1 MAIHVVMFQPEIPANTGNVSRTCAATNSVLHLIRPLGFSTDDKMLKRAGLDYWQFVDVRY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQET-AT 249 +L + +K F I + D + G E KGL + E Sbjct: 61 HDSLEELWEKHPDGQFFYITKYGEQYPSDLDVSDVDGDYFFVFGRETKGLPMEVIENNLD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L ++++LNVSN AA+ +Y Sbjct: 121 RCIRLPQSNLVRSLNVSNTAAIIVYEALRQ 150 >gi|168056477|ref|XP_001780246.1| predicted protein [Physcomitrella patens subsp. patens] gi|162668300|gb|EDQ54910.1| predicted protein [Physcomitrella patens subsp. patens] Length = 190 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYITQ 277 + A +LG EG GL K E ++ G +LNV+ AA++ L+ Sbjct: 86 HKYPFTGSTAFVLGNEGTGLSDKEMEICDFFVYIPQNGPGTASLNVTVAASIVLHQFA 143 >gi|291545357|emb|CBL18465.1| Predicted rRNA methylase (SpoU class) [Ruminococcus sp. SR1/5] Length = 166 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 1/101 (0%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G L + G + ++ + + D ++ G E G+ Sbjct: 50 GMDYWEHLDVTRYLDYEDFLKKNPGAKIYYATTKAPQTYTDVQYEDDCFIMFGKESAGIP 109 Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M G I++LN+SN+ A+ LY Sbjct: 110 EDILVNNQETCVRIPMIGDIRSLNLSNSVAIVLYEALRQHN 150 >gi|327402832|ref|YP_004343670.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823] gi|327318340|gb|AEA42832.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823] Length = 177 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 65/169 (38%), Gaps = 3/169 (1%) Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 E + T L+++L+ + +NIG+ R+A AF+ + + + Sbjct: 8 WELDRVDEQTFKTQEKFPLIIILNDIRSLNNIGSFFRTADAFNIEKVYLCGITAQPPHRE 67 Query: 176 LAKSASGALEHIPYIRISNLTD---ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + K+A GA E I + ++ L++ +K+ + AL+ Sbjct: 68 IHKTALGATETIDWEYRQDINALVAELKEEGIAVCSIEQAEETVLLHEISTLKDQRFALV 127 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G E G+ +++ + + G +LNVS A + L+ + Sbjct: 128 FGNEVDGVDQSVIDSSNYIIEIPQFGTKHSLNVSVCAGIVLWEFAKRYI 176 >gi|149372584|ref|ZP_01891696.1| tRNA/rRNA methyltransferase (SpoU) [unidentified eubacterium SCB49] gi|149354627|gb|EDM43191.1| tRNA/rRNA methyltransferase (SpoU) [unidentified eubacterium SCB49] Length = 232 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 59/180 (32%), Gaps = 8/180 (4%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + + ++ + +G E + + R +V + V HN A++RS Sbjct: 10 YILDIELLEYL-------KGFLTEERMERFEKILSERTKHFTVVTEDVYQIHNTSAVMRS 62 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 AF + + + + + K + Sbjct: 63 CDAFGIQDLHLVEEKFGKRVDKEIAMGAQKWVTLHRHSNLEDCVSTLKDKGYQIVATSPH 122 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +D+ K A+ G E GL E A ++ + M G ++LN+S +AA+ + Sbjct: 123 ADASYLH-DFDYTKKSAIFFGTEKDGLTEGVLEQADALIKVPMYGFTESLNISVSAAIIM 181 >gi|332524134|ref|ZP_08400364.1| putative tRNA/rRNA methyltransferase protein [Rubrivivax benzoatilyticus JA2] gi|332107473|gb|EGJ08697.1| putative tRNA/rRNA methyltransferase protein [Rubrivivax benzoatilyticus JA2] Length = 156 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 2/146 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL H P N G ++R A C + + L ++ E+ P R ++ Sbjct: 4 IVLVHPEIPPNTGNVIRLAANTGCRLHLVEPLGYSMDDKQLRRAGLDYHEYAPVRRHASW 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253 L+ + ++ PL ++ L+ GAE GL + + Sbjct: 64 DALLESERPDPARMFAFTTRGSHPLAEQRWQAGDWLVFGAESAGLPAELLARFPDSQRVR 123 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AVA++ Sbjct: 124 LPMRAGQRSLNLSNAVAVAVFDAWRQ 149 >gi|218961471|ref|YP_001741246.1| putative tRNA/rRNA methyltransferase [Candidatus Cloacamonas acidaminovorans] gi|167730128|emb|CAO81040.1| putative tRNA/rRNA methyltransferase [Candidatus Cloacamonas acidaminovorans] Length = 269 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 1/149 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + ++ ++ D++ N+G++ R+A II E + + K+A G + + Sbjct: 114 QKAKRITVICDNLRSVFNVGSLFRTAECLGIGKIIVCGITPTPEHSNMPKTAMGTEKLVA 173 Query: 189 YIRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + T+A+ H F + D+ K + Q + +A+++G E G+ E Sbjct: 174 WQYFPSTTEAIAFCHQEGFFIYALETIDNAKSVFQTVYQFPLAIVIGNEALGIESSILEL 233 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L G +LNV A + LY Sbjct: 234 CDEFITLPQLGWKNSLNVGVATGIVLYQI 262 >gi|327405561|ref|YP_004346399.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823] gi|327321069|gb|AEA45561.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823] Length = 225 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 51/165 (30%), Gaps = 3/165 (1%) Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + + ++R L ++L+ + HN A++RS F + + + + Sbjct: 16 VKGQMFDEVASMRTRHLTVLLEEIFQEHNASAVIRSCDCFGIQELHVVESKNKYKVQRDI 75 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGA 235 +G + + +AL G Sbjct: 76 ARGAGRWVDLFNYNEGPTPLLDAVNKLKSKGYKIAALTPDAEHSIFDLPLDQPVALSFGT 135 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E +G+ + +E A + M G ++ NVS + A+ L Sbjct: 136 EWEGISDEIREIADYKVSIPMVGFTESFNVSVSVALTL-QALRQR 179 >gi|217966578|ref|YP_002352084.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724] gi|217335677|gb|ACK41470.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724] Length = 153 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 3/153 (1%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 L +VL P+N G I R VA + + K L ++ + Y Sbjct: 2 RYNLHVVLIEPQIPYNTGNIGRLCVATNSKLHLVGKIGFSLNDKYLKRAGLDYWSFLDYE 61 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TAT 249 N + +++ + F + + + LI G+E G+ + E Sbjct: 62 VYKNFEEFVERNKNGRFIFVESPAFKLYTE--VSYQEGDYLIFGSEDYGIPSEIIEKYWE 119 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + M G +++LN+S++ AV +Y K Sbjct: 120 NSVTIPMFGPVRSLNLSSSVAVVVYEALRQIKK 152 >gi|156936222|ref|YP_001440138.1| putative tRNA/rRNA methyltransferase YibK [Cronobacter sakazakii ATCC BAA-894] gi|156534476|gb|ABU79302.1| hypothetical protein ESA_04121 [Cronobacter sakazakii ATCC BAA-894] Length = 157 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H + Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFTAVM 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + A + L++ D L+ G E +GL + Sbjct: 59 RHADYAAFLEAEKPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDVLPQEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148 >gi|90408298|ref|ZP_01216463.1| putative rRNA methylase, SpoU family protein [Psychromonas sp. CNPT3] gi|90310599|gb|EAS38719.1| putative rRNA methylase, SpoU family protein [Psychromonas sp. CNPT3] Length = 154 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + L P N GAI+R C + + ++ H Sbjct: 1 MIEIALFEPEIPQNTGAIIRVCANTGCILHLIEPLGFDFNEKRVRRAGLDY--HEIANIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + G + + ++ + Q L+ G E +GL + + Sbjct: 59 HHKNYQDFLESVKGKRILACTTKTTTYHSQANFQSGDVLLFGPETRGLPSELLDALPLEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N++NA +V +Y Sbjct: 119 KLRIPMQPNSRSMNLANAVSVFVYEAWRQL 148 >gi|49080686|gb|AAT50047.1| PA5127 [synthetic construct] Length = 154 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G I+R C + + L ++ E+ R Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVRRY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 L L+ + ++ + + A + G E +GL + Sbjct: 61 PYLQSCLEA--LGQPRLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEDVRNALPTDR 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN AV +Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVTVYEAWRQL 148 >gi|15600320|ref|NP_253814.1| rRNA methylase [Pseudomonas aeruginosa PAO1] gi|9951426|gb|AAG08512.1|AE004926_2 probable rRNA methylase [Pseudomonas aeruginosa PAO1] Length = 153 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G I+R C + + L ++ E+ R Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVRRY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 L L+ + ++ + + A + G E +GL + Sbjct: 61 PYLQSCLEA--LGQPRLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEDVRNALPTDR 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN AV +Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVTVYEAWRQL 148 >gi|300692668|ref|YP_003753663.1| tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum PSI07] gi|299079728|emb|CBJ52404.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum PSI07] Length = 175 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P E A + ++ E+ Sbjct: 20 MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVH 79 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 ++ L+ + L++ P + G+E +GL + + + Sbjct: 80 ASWEAFLRDAQPDPARMFALTTRGSTPFAGLAFQPGDWFVFGSETRGLSEERRAWFPPSQ 139 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 140 RIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 168 >gi|167835307|ref|ZP_02462190.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia thailandensis MSMB43] Length = 156 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A + ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + ++ + G E +GL E A Sbjct: 61 RDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGPETRGLASALVERFPAGQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149 >gi|213612386|ref|ZP_03370212.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 223 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 84/222 (37%), Gaps = 8/222 (3%) Query: 64 PSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 I + ++ R + V + K G E H G+ Sbjct: 1 RPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELAKASGTE-HHGGVCFLIKKR 59 Query: 122 LSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 T+ + ++ L+ V +PHN+G ++RS F G++ + + ES Sbjct: 60 NGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAI 118 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 ++A G EH+ I ++ D L G+ + SSD + L +K+ L+LG E Sbjct: 119 RTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREY 178 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L +E ++ G +++LNVS A V L Sbjct: 179 DYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAEWWRQ 220 >gi|255318834|ref|ZP_05360060.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens SK82] gi|262378907|ref|ZP_06072064.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|255304090|gb|EET83281.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens SK82] gi|262300192|gb|EEY88104.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 158 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 5/152 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I+R + + L ++ E Sbjct: 1 MIHVVLFEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60 Query: 193 SNLTDALQKMHSW---GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA- 248 N+ + L + + L++ + N +AL++G E +GL + + Sbjct: 61 ENIEECLAHLQTKGIGIDAVYPLTTKGFETPHTADLNRPVALLMGPETRGLPEQVRLMFP 120 Query: 249 -TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV +Y Sbjct: 121 EQHWIRLPMAPESRSLNLSNATAVIVYEAWRQ 152 >gi|217969958|ref|YP_002355192.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T] gi|217507285|gb|ACK54296.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T] Length = 170 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 55/161 (34%), Gaps = 4/161 (2%) Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + + +VL P N G ++R A C + LA++ Sbjct: 1 MHLHPANLGYPAMFEIVLYQPEIPPNTGNVIRLAANTGCRLHLVAPLGFDLSDKQLARAG 60 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 H + A + G + +S+ + + ++ AL+ G E +GL Sbjct: 61 LDY--HDLTCLTVHPDWAHCREVLAGRRMFAMSTRASRRHDRVDFQPGDALLFGPESRGL 118 Query: 241 RPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M +++N+SNA AV +Y Sbjct: 119 PEEILREFAPERRVRIPMRPTNRSVNLSNAVAVVVYEGWRQ 159 >gi|197251230|ref|YP_002148627.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214933|gb|ACH52330.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 157 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFAAVQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + A + L++ D L+ G E +GL + Sbjct: 59 RHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPKEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ +V +Y Sbjct: 119 KIRIPMMPDSRSMNLSNSVSVVVYEAWRQL 148 >gi|145301039|ref|YP_001143880.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|142853811|gb|ABO92132.1| RNA methyltransferase, TrmH family, group 2 [Aeromonas salmonicida subsp. salmonicida A449] Length = 154 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + + ++ H Sbjct: 1 MLDIVLYQPEIPPNTGNIIRLCANTGYRLHLIEPLGFEWDDKRVKRAGLDY--HEFAEVK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + ++ AL+ G E +GL + E+ Sbjct: 59 RWPSYEAFLAAVAPERVFACTTKGSTAHSAAQFAPGDALLFGPESRGLPLEIIESLPFEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA AV +Y + Sbjct: 119 RLRIPMLPQSRSMNLSNAVAVFVYESWRQL 148 >gi|24376005|ref|NP_720048.1| RNA methyltransferase [Shewanella oneidensis MR-1] gi|24351008|gb|AAN57492.1|AE015885_5 RNA methyltransferase, TrmH family, group 2 [Shewanella oneidensis MR-1] Length = 154 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 43/150 (28%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R + E L ++ + R Sbjct: 1 MFHIALYEPEIAPNTGNIIRLCANNGSQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 N L+ M +P + L+ G E +GL E+ Sbjct: 61 KNFDAFLKAMAGKRIMACTTKG--SRPHSELSFAKDDVLLFGPETRGLPMSIIESIPTEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ Y Sbjct: 119 RLRIPMAATSRSLNLSNAVAIISYEAWRQL 148 >gi|289422735|ref|ZP_06424575.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus anaerobius 653-L] gi|289156914|gb|EFD05539.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus anaerobius 653-L] Length = 168 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 5/152 (3%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL PHN G I+R+ + + L + + Sbjct: 13 MPINIVLVEPEIPHNTGNIIRTCANTGAQLHLIKPLGFSLDDKHLKRCGLDYWDIADIKY 72 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-S 250 + + +K + + N+ L+ G E KGL E Sbjct: 73 YDSFEELQEKYPEANYFYATTKTQKSYAD--VEYNEGCFLVFGKETKGLPKDLIEKNEGH 130 Query: 251 MAHLHMPG--IIKALNVSNAAAVALYITQNHF 280 + M G + LN+SN+ A+ +Y Sbjct: 131 CIRIPMRGIEGARCLNLSNSVAIVVYEALRQL 162 >gi|262369376|ref|ZP_06062704.1| rRNA methylase [Acinetobacter johnsonii SH046] gi|262315444|gb|EEY96483.1| rRNA methylase [Acinetobacter johnsonii SH046] Length = 159 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 5/152 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I+R + + L ++ E Sbjct: 1 MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60 Query: 193 SNLTDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA- 248 + L L++ + N +AL++G E +GL + + Sbjct: 61 ETFDECLANLALKGVDINAIYPLTTKGTETPHTSDLNRPVALLMGPETRGLPEQVRMLFP 120 Query: 249 -TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV +Y Sbjct: 121 KEHWIRLPMAENSRSLNLSNATAVIVYEAWRQ 152 >gi|256380914|ref|YP_003104574.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827] gi|255925217|gb|ACU40728.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827] Length = 235 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 83/235 (35%), Gaps = 16/235 (6%) Query: 46 PENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLDWDANLPHPFPV----KTVPPQT 100 + L G H V AL + ++L T ++ P V + V Sbjct: 2 AGEVLLEGFHAVKHALRFGGAGAVREVLLTDRDAVLALARSHAPDLVDVFAAVEPVTAAE 61 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + + G+ H A + + + L++LD+ + N GA++R A Sbjct: 62 LVRRTGRA--HPTGVAGFAARPAAAVPGPDRTAPLVLLDNPRNLGNFGAVVRVAAGLGAS 119 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+++T P + L A + + +P+ Sbjct: 120 GVVSTGDVDPWHP---------TVLRGSAGLHYALPVARVDDPAALEGELFAFDADGEPV 170 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ D L G+E GL +T+ A + L M ++ + N++ + A+ALY Sbjct: 171 DRVRFPDGAVLAFGSERHGLSERTRARADRVVSLPMRPLVSSYNLTTSVAMALYH 225 >gi|218295839|ref|ZP_03496619.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23] gi|218243577|gb|EED10105.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23] Length = 158 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 Q + L+ G E +GL P+ ++ MPG +++LN++ A VA Y Sbjct: 88 YQARFQEGDYLLFGPETRGLPPEVLGRF-PSLYIPMPGPVRSLNLAVAVGVAAYEAYRQL 146 Query: 281 AK 282 + Sbjct: 147 RE 148 >gi|126172465|ref|YP_001048614.1| RNA methyltransferase [Shewanella baltica OS155] gi|125995670|gb|ABN59745.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica OS155] Length = 154 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R + E L ++ + R Sbjct: 1 MFHIALYEPEIAPNTGNIIRLCANNGSQLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + L+ M +P + L+ G E +GL E+ Sbjct: 61 KDFDAFLEAMAGKRIMACTTKG--SRPHTELSFAKDDVLLFGPETRGLPMAIIESIPTEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ Y Sbjct: 119 RLRIPMAATSRSLNLSNAVAIISYEAWRQL 148 >gi|255638690|gb|ACU19650.1| unknown [Glycine max] Length = 260 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 48/157 (30%), Gaps = 9/157 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P N G I R+ A + + + L ++ ++ Sbjct: 78 LQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKIHD 137 Query: 194 NLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS- 250 + D + + K + LI G+E GL P+ + Sbjct: 138 SWEDFHNYFRQQEGEKRLLAFTKRGTKIHSEFSYRKGDYLIFGSETSGLPPEALLDCKTE 197 Query: 251 -----MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 + M ++ LN+S + +ALY Sbjct: 198 PFGGGTIKIPMVETYVRCLNLSVSVGIALYEASRQLN 234 >gi|17545077|ref|NP_518479.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000] gi|17427367|emb|CAD13886.1| putative trna/rrna methyltransferase protein [Ralstonia solanacearum GMI1000] Length = 156 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P E A + ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 ++ L+ + L++ P + G+E +GL + + + Sbjct: 61 ASWDAFLRDAQPDPARMFALTTRGSTPFAGLAFQPGDWFVFGSETRGLSEERRAGFPPSQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149 >gi|255546313|ref|XP_002514216.1| rRNA methylase, putative [Ricinus communis] gi|223546672|gb|EEF48170.1| rRNA methylase, putative [Ricinus communis] Length = 517 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 62/277 (22%), Positives = 104/277 (37%), Gaps = 53/277 (19%) Query: 58 SAALNNPSRKIFQLLATKN----------ALARLDWDANLPHPF--PVKTVPPQTIDKIV 105 AAL+ R+ + L + + + ++ V ++ IV Sbjct: 237 LAALSAARREFYALYVQEGLDLTNNKKKKDKKGFEKVLKMAQRIGLSIRRVSKHDLNMIV 296 Query: 106 GKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 HQGL L+ +PL + L + LD V DP N+GAI+RSA F Sbjct: 297 D-NRPHQGLVLDASPLEMVKIMELDPVSSEDEKGSLWVALDEVTDPQNLGAIIRSAYFFG 355 Query: 159 CDGIITTKRYSPSESAVLAKSASGA-LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 GI+ + S S V++K+++G+ + + + + G + Sbjct: 356 AAGIVLCAKNSAPLSGVVSKASAGSLEIMELRYCRNMMQFLVSSADNGWRVLGGSVASMA 415 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--------MPGI---------- 259 PL + + + L+LG+EG GLRP + + T + + M G Sbjct: 416 VPLNEVVPGEPTILVLGSEGTGLRPLVERSCTQLVRIPGNIPMDVTMGGNDVVESEEINL 475 Query: 260 ------------IKALNVSNAAAVALYIT--QNHFAK 282 +++LNVS AA V L+ N AK Sbjct: 476 QHSSEGFRSFLAVESLNVSVAAGVLLHHLIGSNQMAK 512 >gi|258545723|ref|ZP_05705957.1| TrmH family group 2 RNA methyltransferase [Cardiobacterium hominis ATCC 15826] gi|258519040|gb|EEV87899.1| TrmH family group 2 RNA methyltransferase [Cardiobacterium hominis ATCC 15826] Length = 157 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 41/151 (27%), Gaps = 6/151 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L N G I+R + + L ++ E + Sbjct: 4 IALYQPQIAPNTGNIIRLCANTGAVLHLIHPLGFAWDDRRLRRAGLDYAEFADIRHHDDW 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253 + + L+ G+E GL P T Sbjct: 64 AAFTADIAGRNIWALTTKGTRSLYDATISAE--DVLLFGSETAGLPPFIHAELENTQKIR 121 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH--FAK 282 L M ++LN+SNA AV LY AK Sbjct: 122 LPMRPTSRSLNLSNAVAVVLYEAIRQNLRAK 152 >gi|15639048|ref|NP_218494.1| hypothetical protein TP0054 [Treponema pallidum subsp. pallidum str. Nichols] gi|189025288|ref|YP_001933060.1| hypothetical protein TPASS_0054 [Treponema pallidum subsp. pallidum SS14] gi|3322312|gb|AAC65050.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189017863|gb|ACD70481.1| hypothetical protein TPASS_0054 [Treponema pallidum subsp. pallidum SS14] gi|291059469|gb|ADD72204.1| RNA methyltransferase, TrmH family [Treponema pallidum subsp. pallidum str. Chicago] Length = 319 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 41/251 (16%), Positives = 86/251 (34%), Gaps = 14/251 (5%) Query: 35 SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFP 92 + + + + G+ V + KI + T R Sbjct: 13 QLSHEPPKRRRASLT-VCGLRAVETLGSIHPEKIHRFFFTPVRAKRFGPLCAYLAARKRL 71 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHN 146 ++ Q ++++ + HQG+A V+ + +++LD V D HN Sbjct: 72 YRSANTQELERLT-QSVHHQGVAATIDEPRFPAVTHSQVEFWVQRREFVVLLDRVGDAHN 130 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +GAI+RSA F ++ + ++ + + + +M + Sbjct: 131 LGAIIRSAAFFGVHSLVVSDCRQQAQVTSATYRVAQGGMEFVQLLRCTNAQEVLEMCAGK 190 Query: 207 FQTIGLSSDSKKP----LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 +G S + + + + L+LG E GL + + G +++ Sbjct: 191 MTRVGASPHAFRSLTRLSNILSPEEAVILVLGNEETGLSEHLTAHCDHLCRIAGSGQVES 250 Query: 263 LNVSNAAAVAL 273 LNV+ A A+ L Sbjct: 251 LNVAQAGALFL 261 >gi|330987193|gb|EGH85296.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 151 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G ++R C + + L ++ E+ Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 +L ++K+ + +P A + G E +GL ++ + Sbjct: 61 PDLASCMEKIGNPRLFAFTTKG--SRPFHDASFEPDDAFLFGPESRGLPADILDSLSSEH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AVA+Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|302333521|gb|ADL23714.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus JKD6159] Length = 156 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 1/151 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ +L ++ E + Sbjct: 1 MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 ++ + + + + + + I G E GL +E + Sbjct: 61 HDSIEAFFETTNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDT 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M I++LN+SN AA+ +Y Sbjct: 121 ALRIPMSEHIRSLNLSNTAALLIYEALRQQN 151 >gi|150396754|ref|YP_001327221.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419] gi|150028269|gb|ABR60386.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419] Length = 153 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 54/149 (36%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++L + L + P N G ILR A I L ++ + + Sbjct: 1 MNELRIALYQPDIPGNTGTILRLAACLGLAVDIIEPAGFDLSDRNLKRAGMDYIAAVTMT 60 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R N S G + + S+ + P + + L+LG E G+ + E A + Sbjct: 61 RHVNWERFETWRSSTGRRLVLASTKAAVPYTRFMFKPDDILLLGRESAGVPDQVHERADA 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ A A+ + Sbjct: 121 RILIPMAPGQRSLNIAMAGAMIVGEAIRQ 149 >gi|113866368|ref|YP_724857.1| rRNA methylase (SpoU class) [Ralstonia eutropha H16] gi|113525144|emb|CAJ91489.1| predicted rRNA methylase (SpoU class) [Ralstonia eutropha H16] Length = 156 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P E A + ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLEDARMRRAGLDYHEYATMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + L++ P + + G+E +GL P+ ++ Sbjct: 61 ESWDALMASEQPDPARMFALTTRGSTPFGEVAFRPGDWFVFGSETRGLSPERRDWFPPAQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149 >gi|303230258|ref|ZP_07317025.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica ACS-134-V-Col7a] gi|302515041|gb|EFL57016.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica ACS-134-V-Col7a] Length = 161 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 43/146 (29%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R A + + + ++ + N+ Sbjct: 3 IVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHENI 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254 + K + + L+ G E +GL E + + Sbjct: 63 EELYAKYPDRRYFYATTKAKHVHSD--VKFEIGDMLVFGPETRGLPESLLEGNEETCIRI 120 Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280 M ++LN+SN+ A+ Y Sbjct: 121 PMVEEARSLNLSNSVAIIAYEAMRQL 146 >gi|229830204|ref|ZP_04456273.1| hypothetical protein GCWU000342_02313 [Shuttleworthia satelles DSM 14600] gi|229791502|gb|EEP27616.1| hypothetical protein GCWU000342_02313 [Shuttleworthia satelles DSM 14600] Length = 169 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 1/99 (1%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G + L + + ++ + ++ G E G+ Sbjct: 49 GMDYWKQLDVRTYLDWEDFCAKNPDARIWMATTKGRHVYSDVSYGPDDYIMFGKESAGIP 108 Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M G I++LN+SN+ A+ Y Sbjct: 109 EEILIRQPERCIRIPMQGEIRSLNLSNSVAIVAYEALRQ 147 >gi|189220282|ref|YP_001940922.1| tRNA (cytosine34-2'-O-)-methyltransferase, SpoU class [Methylacidiphilum infernorum V4] gi|189187140|gb|ACD84325.1| tRNA (cytosine34-2'-O-)-methyltransferase, SpoU class [Methylacidiphilum infernorum V4] Length = 161 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 4/157 (2%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + + L +VL P N G I R A + + E A L ++ Sbjct: 2 EWPMEHQGLGVVLVAPQIPQNTGNIARICAATFSELHLVKPLGFSLEDAALRRAGLDYW- 60 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + + + + + P L+ G E KGL + Sbjct: 61 -KEVRLFLWEGWDHFTAANPRKRLLFFETGTYPPYFTASFAPGDMLVFGRETKGLSQRIL 119 Query: 246 ETATSMAH-LHM-PGIIKALNVSNAAAVALYITQNHF 280 + + + + G +++LN++N ++ LY Sbjct: 120 SFSPHFIYSIPILNGKVRSLNLANCVSIVLYEALRQI 156 >gi|115477186|ref|NP_001062189.1| Os08g0506500 [Oryza sativa Japonica Group] gi|42408928|dbj|BAD10185.1| rRNA methylase-like [Oryza sativa Japonica Group] gi|113624158|dbj|BAF24103.1| Os08g0506500 [Oryza sativa Japonica Group] Length = 236 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 27/99 (27%), Gaps = 7/99 (7%) Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 N + + + L+ G+E KGL E + Sbjct: 113 HDSWNEFRDYFMKQDGEKRLLAFTKRGTSIHSDFSYKPGDWLVFGSETKGLPQSALEDCS 172 Query: 250 S------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 + M ++ LN+S + VALY Sbjct: 173 REGLGGGTIRIPMVETYVRCLNLSVSVGVALYEAARQLN 211 >gi|114049292|ref|YP_739842.1| RNA methyltransferase [Shewanella sp. MR-7] gi|113890734|gb|ABI44785.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp. MR-7] Length = 154 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 43/150 (28%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R + E L ++ + R Sbjct: 1 MFHIALYEPEIAPNTGNIIRLCANNGSQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 N L+ M +P + L+ G E +GL E+ Sbjct: 61 KNFDAFLEAMTGKRIMACTTKG--SRPHTELSFAKDDVLLFGPETRGLPMPIIESIPTEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ Y Sbjct: 119 RLRIPMAATSRSLNLSNAVAIISYEAWRQL 148 >gi|110636572|ref|YP_676779.1| RNA methylase [Cytophaga hutchinsonii ATCC 33406] gi|110279253|gb|ABG57439.1| RNA methylase, SpoU family [Cytophaga hutchinsonii ATCC 33406] Length = 176 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 3/159 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 T + + +++VLD+V HN+G+ R+A AF + I + + K+A GA Sbjct: 16 TFKKTKKTSIIIVLDNVRSLHNVGSFFRTADAFQIEKIYLCGITGTPPNREIHKTALGAT 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQT---IGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 E + + L K+ + G+Q K +K LI G E G+ Sbjct: 76 ESVEWEHAPLAVGFLPKLKANGYQILSIEQTDKSIALQDFSINKENKYVLIFGNEVYGVS 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + + G + NVS + L+ Sbjct: 136 EEVIKLSDHAIEIPQFGTKHSFNVSVTGGIVLWEFFRRI 174 >gi|301016090|pdb|3NK6|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase gi|301016091|pdb|3NK6|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase gi|301016092|pdb|3NK7|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase S-Adenosyl- L-Methionine Complex gi|301016093|pdb|3NK7|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase S-Adenosyl- L-Methionine Complex Length = 277 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 39/258 (15%), Positives = 92/258 (35%), Gaps = 4/258 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + +++ + S + + + + + + I ++ L D Sbjct: 14 SDPAVQRIIDVTKHS--RASIKTTLIEDTEPLMECIRAGVQFIEVYGSSGTPLDPALLDL 71 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV+ + ++++ E + + P + D ++VLD V Sbjct: 72 CRQREIPVRLIDVSIVNQLFKAERKAKVFGIARVPRPARLADIAERGGDVVVLDGVKIVG 131 Query: 146 NIGAILRS-AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIGAI+R+ + ++ + L +++ G + +P + + Sbjct: 132 NIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVVLADREEAVSFLRDN 191 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + + + D++AL+ G+E G QE + + M ++LN Sbjct: 192 DIALMVLDTDGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLN 251 Query: 265 VSNAAAVALYIT-QNHFA 281 VS + +AL+ +FA Sbjct: 252 VSVSVGIALHERSARNFA 269 >gi|1022801|gb|AAA79704.1| OBP33pep [Arabidopsis thaliana] Length = 210 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 1/106 (0%) Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + S + + K +D + + A Sbjct: 29 DFNAFGSHGSASHIRFRHFHSLIEARNYLKEEKDCDICGVEIADGASAVNEHPFKRNTAF 88 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYIT 276 +LG EG GL K E ++ G +LNV+ AA++ L+ Sbjct: 89 LLGNEGSGLSAKEYEICDFFVYIPQYGCGTASLNVTVAASIVLHHF 134 >gi|5281018|emb|CAB45991.1| OBP33pep like protein [Arabidopsis thaliana] gi|7268299|emb|CAB78594.1| OBP33pep like protein [Arabidopsis thaliana] Length = 278 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 1/106 (0%) Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + S + + K +D + + A Sbjct: 41 DFNAFGSHGSASHIRFRHFHSLIEARNYLKEEKDCDICGVEIADGASAVNEHPFKRNTAF 100 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYIT 276 +LG EG GL K E ++ G +LNV+ AA++ L+ Sbjct: 101 LLGNEGSGLSAKEYEICDFFVYIPQYGCGTASLNVTVAASIVLHHF 146 >gi|15234624|ref|NP_193287.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] gi|26449903|dbj|BAC42073.1| OBP33pep like protein [Arabidopsis thaliana] gi|28827336|gb|AAO50512.1| putative OBP33pep protein [Arabidopsis thaliana] gi|332658215|gb|AEE83615.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] Length = 222 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 1/106 (0%) Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + S + + K +D + + A Sbjct: 41 DFNAFGSHGSASHIRFRHFHSLIEARNYLKEEKDCDICGVEIADGASAVNEHPFKRNTAF 100 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYIT 276 +LG EG GL K E ++ G +LNV+ AA++ L+ Sbjct: 101 LLGNEGSGLSAKEYEICDFFVYIPQYGCGTASLNVTVAASIVLHHF 146 >gi|1709266|sp|P52391|NHS_STRAS RecName: Full=23S rRNA methyltransferase; Short=23S rRNA methylase gi|1654411|gb|AAB17875.1| 23S rRNA methyltransferase [Streptomyces actuosus] Length = 274 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 39/258 (15%), Positives = 92/258 (35%), Gaps = 4/258 (1%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + +++ + S + + + + + + I ++ L D Sbjct: 11 SDPAVQRIIDVTKHS--RASIKTTLIEDTEPLMECIRAGVQFIEVYGSSGTPLDPALLDL 68 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 PV+ + ++++ E + + P + D ++VLD V Sbjct: 69 CRQREIPVRLIDVSIVNQLFKAERKAKVFGIARVPRPARLADIAERGGDVVVLDGVKIVG 128 Query: 146 NIGAILRS-AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIGAI+R+ + ++ + L +++ G + +P + + Sbjct: 129 NIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVVLADREEAVSFLRDN 188 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + + + D++AL+ G+E G QE + + M ++LN Sbjct: 189 DIALMVLDTDGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLN 248 Query: 265 VSNAAAVALYIT-QNHFA 281 VS + +AL+ +FA Sbjct: 249 VSVSVGIALHERSARNFA 266 >gi|327312806|ref|YP_004328243.1| TrmH family RNA methyltransferase [Prevotella denticola F0289] gi|326945589|gb|AEA21474.1| RNA methyltransferase, TrmH family [Prevotella denticola F0289] Length = 205 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 25/65 (38%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + AL++G E KG++ + + + G +LNVS A + ++ Sbjct: 138 HPTHPLHPRHDTRYALVMGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTAGIVIWE 197 Query: 276 TQNHF 280 Sbjct: 198 FARRL 202 >gi|306837891|ref|ZP_07470751.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653] gi|306406979|gb|EFM63198.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653] Length = 228 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 7/216 (3%) Query: 63 NPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 + + LL +N L L LP PV +VP +D + G VH+G+ Sbjct: 8 SARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRK 66 Query: 122 LSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 P L + L++VL +++ N+G+I R+A AF D ++ + Sbjct: 67 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAI 126 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 + + GA +PY + D + GF + L+ + + + + ++ AL+LG EG Sbjct: 127 RVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEG 186 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +GL + E A + M +LNV+ A+ +AL Sbjct: 187 EGLPSRLLERL-KTARIPMSTTFDSLNVATASGIAL 221 >gi|304406670|ref|ZP_07388325.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus curdlanolyticus YK9] gi|304344203|gb|EFM10042.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus curdlanolyticus YK9] Length = 155 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 53/149 (35%), Gaps = 3/149 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + ++ A L ++ + Sbjct: 1 MAFHIVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFRTDDATLKRAGLDYWYAVNLTY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250 + ++ ++ F ++ + D + G E KGL + + Sbjct: 61 YDSFSEVEERFKGHRFFYASTRANKRYSD--FEYKDGDLFVFGKETKGLPQELLDANPNQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M +++LN++N+AA+ +Y Sbjct: 119 LIRMPMTDKVRSLNLANSAAIVVYEALRQ 147 >gi|321314617|ref|YP_004206904.1| putative rRNA methylase [Bacillus subtilis BSn5] gi|291483342|dbj|BAI84417.1| rRNA methylase-like protein [Bacillus subtilis subsp. natto BEST195] gi|320020891|gb|ADV95877.1| putative rRNA methylase [Bacillus subtilis BSn5] Length = 157 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + + ++ +L ++ E + + Sbjct: 1 MALHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQET-AT 249 +L + + F I + ++ + G E GL + Sbjct: 61 HDSLEELFEAYEKGQFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNNMD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 L M +++LN+SN AA+ +Y Sbjct: 121 RCLRLPMTEHVRSLNLSNTAAILVYEALRQQN 152 >gi|330814214|ref|YP_004358453.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB LSU rRNA Gm2251 [Candidatus Pelagibacter sp. IMCC9063] gi|327487309|gb|AEA81714.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB LSU rRNA Gm2251 [Candidatus Pelagibacter sp. IMCC9063] Length = 235 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 111/239 (46%), Gaps = 5/239 (2%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + ++ G +T+ R I Q+L+TK + L + + + Sbjct: 2 QKDNFFWVGGKNTIHEISKWKRRTIKQVLSTKKINTSENLQETLVDQKKI----NKIFND 57 Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 L +T L + + + +++LD+VND NIG+I+R+ AF +I Sbjct: 58 PNFVHQGLAALIEKTKFLKDKDIKNIPDHSNIVLLDNVNDIRNIGSIIRNCAAFEISHLI 117 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 ++ +S L KSASGA EHI +I++SNL A+Q++ GF + D+K+ +++ Sbjct: 118 I-EKKINIDSHYLFKSASGATEHIQFIKVSNLNTAIQELKRNGFFVFSAALDAKQTMKEI 176 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 K ++LG+EG+G+R + + + I +LNVSN +A+ + K Sbjct: 177 SFGSKNCIVLGSEGEGVRNLISKNSDEHFKIEHSSNIDSLNVSNTSAIIFNHLYQNTCK 235 >gi|320532683|ref|ZP_08033477.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral taxon 171 str. F0337] gi|320135101|gb|EFW27255.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral taxon 171 str. F0337] Length = 152 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 52/150 (34%), Gaps = 6/150 (4%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L ++ P N GA +R + + + ++ + + Sbjct: 1 MLHVIFFSPRIPGNTGAAIRLSANTGAMLHLVDPLFDMDDAKLRRAGLD----YHDLAST 56 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + +S +++ Q + AL+ G E GL + + ++ Sbjct: 57 RVHATWQKCLEQIPGRIFAFTSHTERLYTQVDWHGDDALLFGPEPTGLPQEILDHPRVSA 116 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN++N+AA+ LY Sbjct: 117 HLRIPMVEGNRSLNLANSAAIGLYEAWRSL 146 >gi|563845|emb|CAA86559.1| unnamed protein product [Bacillus circulans subsp. alkalophilus] Length = 144 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 3/146 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + ++ L ++ Sbjct: 1 MALHIVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFNTDDKTLKRAGLDYWY--AVHI 58 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250 + + + + S+ + K D L+ G E KGL P+ S Sbjct: 59 EYHDSFEELQQKYPEGRFFYTSTKATKRYCDIAFQDGDFLVFGKETKGLPPELLAANPDS 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276 + M +++LN+SN+AA+ +Y Sbjct: 119 CIRMPMTDKVRSLNLSNSAAIIVYEA 144 >gi|257462965|ref|ZP_05627369.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] gi|317060582|ref|ZP_07925067.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] gi|313686258|gb|EFS23093.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] Length = 152 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 3/147 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P+N G I RS V + + + + +S + + Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTNTHLHLIKPLGFSLDEKQIRRSGLDYWHSVKLTIWESF 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254 + L + K + ++ G E +G+ + + Sbjct: 63 EEFLASDPEMRLFYATTKTKQKYSD--VRYQENDYIMFGPESRGIPEDILKQDPERCITI 120 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 M + ++LN+SN+AA+ LY Sbjct: 121 PMIPMGRSLNLSNSAAIILYEALRQVN 147 >gi|146299481|ref|YP_001194072.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] gi|146153899|gb|ABQ04753.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] Length = 178 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 65/160 (40%), Gaps = 3/160 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + L++VLD + HNIG++ R++ AF + II + + + K+A GA Sbjct: 16 DFKKSDKTPLILVLDDIRSLHNIGSVFRTSDAFLVEKIILCGITATPPNKEIHKTALGAT 75 Query: 185 EHIPYIRISNLTDALQKMHSWGF---QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 E + + N+ + ++ + + S Q KN K AL+ G E G+ Sbjct: 76 ETVAWEHHENVLEVIENLKKENVLTLAIEQVESAVFLQDFQVEKNQKYALVFGNEVYGVS 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + G +LN++ +A + ++ Sbjct: 136 QEAVAICDGCIEIPQLGTKHSLNIAVSAGIVVWDLFQKLN 175 >gi|329766981|ref|ZP_08258509.1| hypothetical protein HMPREF0428_00206 [Gemella haemolysans M341] gi|328837706|gb|EGF87331.1| hypothetical protein HMPREF0428_00206 [Gemella haemolysans M341] Length = 157 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 5/152 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ V + + + + ++ EH+ + + Sbjct: 4 IVLFQPEIPANTGNIARTCVGTNTRLHLIRPLGFSIDDKHVKRAGLDYWEHLDLVVWDSF 63 Query: 196 TDALQKMHSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252 + L+ + + T S + +N+ I I G E KGL + +E + Sbjct: 64 DEFLEATNDKHYYLITKFGSKNYCDFDFSNEENEDIYFIFGRETKGLPKEFREKYSEQAL 123 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH--FAK 282 + M +++LN+SN AA+ +Y F K Sbjct: 124 RIPMSENVRSLNLSNTAALIIYEALRQQSFNK 155 >gi|154508741|ref|ZP_02044383.1| hypothetical protein ACTODO_01249 [Actinomyces odontolyticus ATCC 17982] gi|153798375|gb|EDN80795.1| hypothetical protein ACTODO_01249 [Actinomyces odontolyticus ATCC 17982] Length = 153 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 5/150 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L ++ P N GA +R + + + A L ++ + + Sbjct: 1 MLHIIFWEPEIPGNTGAAIRLSACTGSMLHLVKPLGFDMDDAKLRRAGLD---YHDLAHV 57 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + L+ + D L+ G E GL Sbjct: 58 MVHDSLDEALAEVPGRVWALTGHATTMYSDVSYADGDGLLFGRESVGLSEDAMHHPRVED 117 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++LN++N+A++ LY Sbjct: 118 RVRIQMVDGVRSLNLANSASIVLYEAWRQL 147 >gi|299145105|ref|ZP_07038173.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_23] gi|298515596|gb|EFI39477.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_23] Length = 175 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 67/159 (42%), Gaps = 3/159 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 V L++VLD + HNIG++ R++ AF + I + + K+A GA Sbjct: 16 EFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + ++N DA+ + + G+ + + E K K A+++G E KG++ Sbjct: 76 FTVDWKYVNNAVDAVDNLKNEGYIVYSVEQAEGSIMFDELQLDKTKKYAIVMGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + G +LNVS + ++ Sbjct: 136 QEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFKKL 174 >gi|259906785|ref|YP_002647141.1| putative tRNA/rRNA methyltransferase YibK [Erwinia pyrifoliae Ep1/96] gi|224962407|emb|CAX53862.1| rRNA methyltransferase CspR (SpoU class) [Erwinia pyrifoliae Ep1/96] gi|283476571|emb|CAY72399.1| putative tRNA/rRNA methyltransferase [Erwinia pyrifoliae DSM 12163] gi|310765995|gb|ADP10945.1| putative tRNA/rRNA methyltransferase YibK [Erwinia sp. Ejp617] Length = 156 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 4/149 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VL P N G I+R + + L ++ H Sbjct: 1 MHIVLFEPEIPPNTGNIIRLCANTGFQLHVIEPLGFAWDDKRLRRAGLDY--HEFAAIRH 58 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251 + + + L++ L+ G E +GL + + A Sbjct: 59 HASYEAFAASEAPQRLFALTTKGTPAHSAVSFQAGDYLLFGPETRGLPARVLDALPAQQK 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 IRIPMMPDSRSMNLSNAVSVVVYEAWRQL 147 >gi|241205747|ref|YP_002976843.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859637|gb|ACS57304.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 153 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 50/149 (33%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + L + L + P N G ILR A + L ++ + Sbjct: 1 MTSLRLALYQPDIPGNTGTILRLAACLGFAVDLIEPAGFDISDRNLKRAGMDYIAAAALT 60 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R N + G + I S+ + + L+ G E G+ + E A + Sbjct: 61 RHVNWDRFEAWRLTTGRRLILASTKAAERYTDLAFRPDDVLLFGRESAGVPDQVHERADA 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++NV+ +AA+ + Sbjct: 121 RVLIPMVEGQRSINVAVSAAMIVGEAMRQ 149 >gi|288801847|ref|ZP_06407289.1| RNA methylase, SpoU family [Prevotella melaninogenica D18] gi|288335889|gb|EFC74322.1| RNA methylase, SpoU family [Prevotella melaninogenica D18] Length = 191 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 25/70 (35%) Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 ++ + A++LG E KG++ + + + G +LNVS Sbjct: 119 NPTNHQHPTPNTQHPVIHYAIVLGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTTG 178 Query: 271 VALYITQNHF 280 + ++ Sbjct: 179 IVIWEFARQL 188 >gi|253569078|ref|ZP_04846488.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6] gi|251841097|gb|EES69178.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6] Length = 175 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 66/159 (41%), Gaps = 3/159 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++VLD + HNIG++ R++ AF + I + + K+A GA Sbjct: 16 EFKQAEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + ++N DA+ + G+ + + + K K A+++G E KG++ Sbjct: 76 FTVDWKYVNNAVDAVDNLRKEGYIVYSIEQAEGSIMLDQLELDKTKKYAIVMGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + + G +LNVS + ++ Sbjct: 136 QEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFKKL 174 >gi|160932290|ref|ZP_02079681.1| hypothetical protein CLOLEP_01125 [Clostridium leptum DSM 753] gi|156868892|gb|EDO62264.1| hypothetical protein CLOLEP_01125 [Clostridium leptum DSM 753] Length = 168 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 3/150 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 +QL +V+ P N G + R+ A + + L ++ + Sbjct: 1 MAQLNIVMVEPEIPQNTGNVARTCAATGARLHLVGPMGFTIDDKKLKRAGLDYWHLLDIT 60 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT 249 NL + +K F + D L+ G E GL K + Sbjct: 61 YYENLEEFFEKNKGGNFYYFSTKA--PHRHTDLAYPDNCYLLFGKETAGLPEKLLFDNPD 118 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M ++LN+SN+ AV +Y Sbjct: 119 TTVRIPMIDEARSLNLSNSVAVGVYEVLRQ 148 >gi|107104223|ref|ZP_01368141.1| hypothetical protein PaerPA_01005296 [Pseudomonas aeruginosa PACS2] gi|218894226|ref|YP_002443095.1| putative rRNA methylase [Pseudomonas aeruginosa LESB58] gi|254243993|ref|ZP_04937315.1| hypothetical protein PA2G_04825 [Pseudomonas aeruginosa 2192] gi|126197371|gb|EAZ61434.1| hypothetical protein PA2G_04825 [Pseudomonas aeruginosa 2192] gi|218774454|emb|CAW30271.1| probable rRNA methylase [Pseudomonas aeruginosa LESB58] Length = 153 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G I+R C + + L ++ E+ R Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVRRY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 +L L+ + ++ + + A + G E +GL + Sbjct: 61 PDLQSCLEA--LGQPRLFAFTTKGSRAFHEVAYQRDDAFLFGPESRGLPEDVRNALPTDR 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN AV +Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVTVYEAWRQL 148 >gi|303241069|ref|ZP_07327578.1| RNA methyltransferase, TrmH family, group 2 [Acetivibrio cellulolyticus CD2] gi|302591329|gb|EFL61068.1| RNA methyltransferase, TrmH family, group 2 [Acetivibrio cellulolyticus CD2] Length = 164 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 1/98 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + K G ++ + K + D L+ G E KGL Sbjct: 52 YWNEVDISYYDSFQELKEKYTGCSFYYATTKAVKNYAEIEYPDNCFLVFGKETKGLPEDI 111 Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M G I++LN+SN+ A+ +Y T Sbjct: 112 LVDNREWCIRIPMIGEIRSLNLSNSVAIIVYETLRQKN 149 >gi|126696336|ref|YP_001091222.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9301] gi|126543379|gb|ABO17621.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus str. MIT 9301] Length = 160 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 9/68 (13%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---------IIKALNVSNAAAVAL 273 L+ G E GL + + + + MP +++LN+S A +A+ Sbjct: 88 FKFKQDDILLFGREDSGLPDSIIDKSDFLISIFMPNIQTGNNDQKGVRSLNLSVACGIAI 147 Query: 274 YITQNHFA 281 Y Sbjct: 148 YEAHKQIN 155 >gi|325123237|gb|ADY82760.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 157 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 3/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I+R + + L ++ E Sbjct: 1 MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60 Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--T 249 N+ L + + G + + ++ N +AL++G E +GL + Sbjct: 61 DNIELCLADLKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRLMFPQE 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV +Y Sbjct: 121 QWIRLPMAENSRSLNLSNATAVIVYEAWRQ 150 >gi|319781864|ref|YP_004141340.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167752|gb|ADV11290.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 152 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 52/150 (34%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N +L + L + N G ILR A I P L ++ LE Sbjct: 2 NRRLRIALYQPDIAGNTGTILRFAACLGLGVDIIEPAGFPLSDKALKRAGMDYLEMAALT 61 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R + + + + + LS+ + D L+ G E G+ + A + Sbjct: 62 RHVDWHAFEEWRKADSHRLVLLSTKATTAYTSFSFADGDVLLFGRESAGVPDPVHQAADA 121 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G +++NV+ + A+ + Sbjct: 122 RLTIPMQGTARSINVALSVAMVVGEAIRQL 151 >gi|293192913|ref|ZP_06609757.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus F0309] gi|292819969|gb|EFF78968.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus F0309] Length = 153 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 5/150 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L ++ P N GA +R + + + A L ++ + + Sbjct: 1 MLHIIFWEPEIPGNTGAAIRLSACTGSMLHLVEPLGFDMDDAKLRRAGLD---YHDLAHV 57 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + L+ + D L+ G E GL Sbjct: 58 MVHDSLDEALAEVPGRVWALTGHATTMYSDVSYADGDGLLFGRESVGLSEDAMHHPRVED 117 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++LN++N+A++ LY Sbjct: 118 RVRIQMVDGVRSLNLANSASIVLYEAWRQL 147 >gi|257483750|ref|ZP_05637791.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331012099|gb|EGH92155.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 151 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G ++R C + + L ++ E+ Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 +L ++K+ + +P A + G E +GL ++ + Sbjct: 61 PDLASCMEKIGNPRLFAFTTKG--SRPFHDASFEPGDAFLFGPESRGLPADILDSLSSEH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AVA+Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|307128915|ref|YP_003880931.1| putative rRNA methylase [Dickeya dadantii 3937] gi|306526444|gb|ADM96374.1| predicted rRNA methylase [Dickeya dadantii 3937] Length = 154 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R A C + E L ++ H Sbjct: 1 MFHIALYEPQIAPNTGNIIRLAANNGCSLHLIEPLGFDFEEKKLRRAGLDY--HDLASVS 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 + G + ++ +P ++ L+ G+E GL + Sbjct: 59 RHRNYQDFLQAVAGRRIFACTTKGSRPYDEPDYQPGDVLLFGSETAGLPDDIRNGFAPEC 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN+ A+ Y Sbjct: 119 RIRIPMEPNCRSLNLSNSVAIISYEAWRQ 147 >gi|134098676|ref|YP_001104337.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea NRRL 2338] gi|291003638|ref|ZP_06561611.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea NRRL 2338] gi|133911299|emb|CAM01412.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea NRRL 2338] Length = 152 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 5/149 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +V H P N G +R A + + A L ++ + Sbjct: 1 MFHVVFYHPEIPGNTGNAIRMAAGSGAALHLIEPLGFSVDDAKLRRAGLDYHDRAALHVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 +L A + S+ L+ G E GL P+ E A + Sbjct: 61 PDLDAAWTALRPDRVFAFSSSATRSYET--VSYRPGDVLMFGPESVGLPPELLE-ADYVT 117 Query: 252 -AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++N+AA+A+Y Sbjct: 118 PLRIPMLPGNRSLNLANSAAIAVYEAWRQ 146 >gi|225574098|ref|ZP_03782709.1| hypothetical protein RUMHYD_02163 [Blautia hydrogenotrophica DSM 10507] gi|225038698|gb|EEG48944.1| hypothetical protein RUMHYD_02163 [Blautia hydrogenotrophica DSM 10507] Length = 166 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + ++ G E G+ + E + + M G I++LN+SN+ A+ LY Sbjct: 85 PQRYTDVRFEEDCYIMFGKESAGIPEEILLENQATAIRIPMIGDIRSLNLSNSVAIVLYE 144 Query: 276 TQNH 279 Sbjct: 145 ALRQ 148 >gi|53803355|ref|YP_114950.1| RNA methyltransferase [Methylococcus capsulatus str. Bath] gi|53757116|gb|AAU91407.1| RNA methyltransferase, TrmH family, group 2 [Methylococcus capsulatus str. Bath] Length = 159 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 41/149 (27%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + + A L ++ Sbjct: 1 MFHVVLYEPEIPPNTGNVIRLCANTGACLHLIEPLGFEMDDARLRRAGLDY--REWAEVA 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250 + + L++ + A + G E +GL Sbjct: 59 RHRDWEGFVGAVAPERIFALTTRGEVSHADVTYRPGDAFLFGPESRGLPAALLARFETGR 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV + Sbjct: 119 RIRLPMRPGSRSLNLSNAVAVVCFEAWRQ 147 >gi|306843065|ref|ZP_07475688.1| tRNA/rRNA methyltransferase [Brucella sp. BO2] gi|306286744|gb|EFM58294.1| tRNA/rRNA methyltransferase [Brucella sp. BO2] Length = 203 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%) Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMV 137 + LP PV +VP +D + G VH+G+ P L + L++V Sbjct: 3 EQLRQLPLGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRKSQPDLRDMLAALPQKSLVVV 61 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L +++ N+G+I R+A AF D ++ + + + GA +PY + D Sbjct: 62 LCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGAALKVPYFHGGTIDD 121 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 + GF + L+ + + + + ++ AL+LG EG+GL + E A + M Sbjct: 122 INAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSRLLERL-ETARIPMS 180 Query: 258 GIIKALNVSNAAAVAL 273 +LNV+ A+ +AL Sbjct: 181 KTFDSLNVATASGIAL 196 >gi|162447356|ref|YP_001620488.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A] gi|161985463|gb|ABX81112.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A] Length = 173 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 1/149 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I+R+ V + + L +SA + + + Sbjct: 1 MIHVVLCQPEIPQNTGNIMRTCVGSGVHLHLIKPLGFKIDDTKLRRSAVDYYDALNFEIH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 + + + + I L+ G+E G+ + + Sbjct: 61 EDFESFQNEHPGTYLYLSRYGRKTHSAPNYQAIKGDIYLVFGSESYGIDRALLSKNIENT 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + I++LN+SNA A+ +Y Sbjct: 121 FRIPTNDKIRSLNLSNAVAITVYEVLRQL 149 >gi|86358645|ref|YP_470537.1| tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42] gi|86282747|gb|ABC91810.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42] Length = 153 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 51/149 (34%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + L + L + P N G +LR A + L +S + Sbjct: 1 MTNLRLALYQPDIPGNTGTLLRLAACLGFAVDLIEPAGFNVSDRDLKRSGMDYIAAAALT 60 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R ++ + G + I S+ + + + L+ G E G+ E A + Sbjct: 61 RHASWDRFEAWHAATGRRLILASTKAAERYTDFVFRPDDVLLFGRESAGVPDHVHERADA 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++NV+ +AA+ + Sbjct: 121 CILIPMVEGQRSINVAISAAMIVGEAMRQ 149 >gi|305665198|ref|YP_003861485.1| putative SpoU rRNA methylase family protein [Maribacter sp. HTCC2170] gi|88709950|gb|EAR02182.1| putative SpoU rRNA methylase family protein [Maribacter sp. HTCC2170] Length = 176 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 69/161 (42%), Gaps = 3/161 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + + +++VLD++ +NIG++ R+A AF + I + + K+A GA Sbjct: 16 SFKKTEKTPIILVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAIPPHKDIRKTALGAT 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLR 241 E + + + + ++++ + + + + E K AL+ G E KG+ Sbjct: 76 ESVSWEYRKDTLELIKELQADDCEIAAVEQADNSQMLNEFLIQKTSKYALVFGNEVKGVS 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + + + G +LN+S +A + ++ K Sbjct: 136 QEVVSASDVVLEIPQFGTKHSLNISVSAGIVIWDFWTMLNK 176 >gi|257125465|ref|YP_003163579.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b] gi|257049404|gb|ACV38588.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b] Length = 157 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 17/152 (11%), Positives = 53/152 (34%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + N +++L+ + + + +I + + + + Sbjct: 1 MVNKMNIVLLNPEIHVNTGNIGRTCVLTNTKLHLIKPLGFELDDKKIRRAGLDYWKDVKL 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ + + + + + ++ +K+ ND ++ G E +G+ + Sbjct: 61 FVWENWEHFWRENIENGNAKIYFATTKTKQRYTDVKFNDNDYIMFGPESRGIPEEILNRY 120 Query: 249 TS-MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M + ++LN+SNA A+ L+ Sbjct: 121 KESNITIPMLPLGRSLNLSNAVAIVLFEALRQ 152 >gi|304436490|ref|ZP_07396464.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370536|gb|EFM24187.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 165 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VL P N G I R + + ++ L ++ + Sbjct: 1 MHIVLVEPEIPGNTGNIARLCAGTGMELHLVQPLGFSTDDKHLKRAGLDYWHLVRVHYHD 60 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMA 252 + Q+ H F + L+ G E GL + + Sbjct: 61 SFAALHQQYHEHTFYFCSTKARHSYCD--ISYKIDDFLVFGKESAGLPESLLTDYEANTI 118 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA AV + Sbjct: 119 RIPMREEARSLNLSNAVAVVAFEALRQ 145 >gi|119484369|ref|ZP_01618986.1| spoU protein [Lyngbya sp. PCC 8106] gi|119457843|gb|EAW38966.1| spoU protein [Lyngbya sp. PCC 8106] Length = 229 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 4/153 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--- 184 R QL ++L+ + PHN A LR+ +F + + + + S Sbjct: 30 QQRTRQLTVILEDIYQPHNASACLRNCDSFGVQDVHIIENRNDFDLNREVSLGSHRWLTI 89 Query: 185 -EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + + + + + +EQ +K+ L+ G E GL Sbjct: 90 SRYNEPKINNTKICLEKLKSQGYKIVATTPHEEEITIEQISVEEKLGLMFGTELNGLSDD 149 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 A + + M G ++ N+S + A+ LY Sbjct: 150 AVSQADYLVRIPMVGFSESFNISVSVALCLYEI 182 >gi|78184720|ref|YP_377155.1| SpoU family tRNA/rRNA methyltransferase [Synechococcus sp. CC9902] gi|78169014|gb|ABB26111.1| putative tRNA/rRNA methyltransferase (SpoU family) [Synechococcus sp. CC9902] Length = 166 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 49/160 (30%), Gaps = 9/160 (5%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + L + L P N G I R+ AF + + + ++ H+ Sbjct: 5 NPEAPLRVALFEPRIPPNTGNIARTCAAFQLPLSLIEPLGFQIDDRSVRRAGLDYWPHVQ 64 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + Q + L+ G E GL ++ Sbjct: 65 LSTHGSFEAMKQVLLPQSRIIGCSRRGGSCLS-DFEFQHGDVLLFGREDTGLPDDVRDQC 123 Query: 249 TSMAHLHMP--------GIIKALNVSNAAAVALYITQNHF 280 ++ + MP G +++LN+S A A+ Y+ + Sbjct: 124 HTIVTIPMPGAADSSGQGGVRSLNLSVACALVTYVAGHQL 163 >gi|307719616|ref|YP_003875148.1| hypothetical protein STHERM_c19400 [Spirochaeta thermophila DSM 6192] gi|306533341|gb|ADN02875.1| hypothetical protein STHERM_c19400 [Spirochaeta thermophila DSM 6192] Length = 154 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 3/148 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R+ A + E L ++ + Sbjct: 1 MSIHVVLHEPEIPQNTGNIARTCAATGAILHLIEPLGFSLEDRYLRRAGLDYWPMVDLRV 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250 S+ L++ + + + D+ L+ G E GL + E Sbjct: 61 HSSWEAFLEEERPSSLFLLSTRGTRPYHVCE--FPDETYLVFGKETAGLPARILEAFPDR 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278 + + M ++LN+SNA A+ +Y Sbjct: 119 VVRIPMREGARSLNLSNAVAILVYAALR 146 >gi|326773519|ref|ZP_08232802.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505] gi|326636749|gb|EGE37652.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505] Length = 286 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 88/259 (33%), Gaps = 23/259 (8%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY ++ + R +Q ++ A+ L L + Sbjct: 14 ADYTRLTDVALRRRLETQRGLYMAESSKVITRAVAAGHAP-RSFLMAPRHLEEMRPVIAS 72 Query: 88 PHP---------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----- 133 PV P + ++ I G LA P L+ + + +++ Sbjct: 73 AAGCGGSDDGGEVPVFVAPEEVLESITGFHLHRGALAAMNRPELAGVPELLSSARGGAGA 132 Query: 134 -LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +L+ + D N+GA RSA A D ++ T R + + + G + +P+ RI Sbjct: 133 KRVAILEDLVDHTNVGAAFRSAAALGIDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRI 192 Query: 193 SNLTDALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + T + + ++A++LG EG GL +T Sbjct: 193 ERWPAMDELHAQGFTVAALALSDTSVALDEFAASPACTAPDSRVAVVLGTEGDGLSHRTI 252 Query: 246 ETATSMAHLHMPGIIKALN 264 A + + M G + +LN Sbjct: 253 TAADEVVRIPMAGGVDSLN 271 >gi|148272114|ref|YP_001221675.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830044|emb|CAN00973.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 266 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 85/240 (35%), Gaps = 5/240 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY + + + AL L Sbjct: 16 ADYSHRTDVALRKAAGAGHGIYLAESALVLERALRAGHAPRSVLAL--GGTVDEALALVG 73 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 PV T P + + ++ G +A P L + +++ ++VL+ V DP N+ Sbjct: 74 DRDVPVFTGPGELLAELTGYVLHRGVVASLDRPALPTVASLLADARRVVVLEDVVDPTNV 133 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RS A D ++ T R + + + G + +P+ R + + GF Sbjct: 134 GAIFRSVGAIGADAVLVTPRCTDPFYRRAIRVSMGTVLQVPWTRTGEWPETRAALADAGF 193 Query: 208 QTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + ++ ++A++LG+EG GL + +A ++ + M I +LN Sbjct: 194 HVAALALTPDAVSIRDFRAEEHARLAIVLGSEGPGLSAEAISSADTVVRIPMAHGIDSLN 253 >gi|319892892|ref|YP_004149767.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus pseudintermedius HKU10-03] gi|317162588|gb|ADV06131.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus pseudintermedius HKU10-03] gi|323464075|gb|ADX76228.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus pseudintermedius ED99] Length = 156 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 1/151 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R+ A + ++ +L ++ +++ Sbjct: 1 MPIHVVLYQPEIPANTGNIARTCAATDTHLHLIRPLGFSTDDKMLRRAGLDYWKYVSITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 N+ ++ F S + + + I G E GL ++ + Sbjct: 61 YDNIESFFEQTEGQYFLLTKFGSKNHTSQDFSDVDQNYYFIFGKETTGLPDWVKDKYDNT 120 Query: 252 -AHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M ++ALN+SN AA+ +Y Sbjct: 121 ALRIPMNENVRALNLSNTAAILVYEALRQQN 151 >gi|297804698|ref|XP_002870233.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297316069|gb|EFH46492.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Length = 222 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 1/106 (0%) Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + S + + K +D + + A Sbjct: 41 DFNAFGSHGSASHIRFRHFHSLIEARTYLKEEKDCDICGVEIADGASAVNEHPFKRNTAF 100 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYIT 276 +LG EG GL K E ++ G +LNV+ AA++ L+ Sbjct: 101 LLGNEGSGLSAKEYEICDFFVYIPQYGCGTASLNVTVAASIVLHHF 146 >gi|242280259|ref|YP_002992388.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio salexigens DSM 2638] gi|242123153|gb|ACS80849.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio salexigens DSM 2638] Length = 196 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 61/151 (40%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R +++D+V DPHN+ AILRS AF GI S SASG Sbjct: 20 RQKDFTLIIDNVWDPHNVSAILRSCDAFGIYGIHLYYTVSQWPELAKKSSASGKKWVERT 79 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + S++ +PL + A+IL E G P+ E Sbjct: 80 KHTDPVKMVGGLRDQGYQVLRTGFSETARPLMDFDLSKPSAVILSNEHSGTAPELAELVP 139 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ M G+I++ NVS AAA+ LY + Sbjct: 140 DEVYIPMQGMIQSFNVSVAAALILYHGFSQR 170 >gi|238064044|ref|ZP_04608753.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149] gi|237885855|gb|EEP74683.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149] Length = 124 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 20/53 (37%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++G E GL +E + M G +LN + AA V LY Sbjct: 62 YDFTQPTVTLIGNETTGLSSGWREACDQLVRTPMFGSASSLNAATAATVMLYE 114 >gi|303276384|ref|XP_003057486.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461838|gb|EEH59131.1| predicted protein [Micromonas pusilla CCMP1545] Length = 411 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K+A++ G E G + A +L + G +LN+S AAA+ ++ Sbjct: 197 PEKLAIVFGTESVGCTEEILAAADLRVYLPLRGFADSLNLSVAAALVMHELFR 249 >gi|167463581|ref|ZP_02328670.1| predicted rRNA methylase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383783|ref|ZP_08057534.1| rRNA methylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151995|gb|EFX44938.1| rRNA methylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 154 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + D + G E KGL P + + L M +++LN+SN+AA+ LY Sbjct: 87 YTDFVFRDGDFFVFGKETKGLSPNILGQYPDTKMRLPMSNAVRSLNLSNSAAIVLYEGLR 146 Query: 279 HF 280 Sbjct: 147 QI 148 >gi|167517941|ref|XP_001743311.1| hypothetical protein [Monosiga brevicollis MX1] gi|163778410|gb|EDQ92025.1| predicted protein [Monosiga brevicollis MX1] Length = 1541 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 3/160 (1%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + + L++ VN P+N+G + R+ F+ D ++ S S Sbjct: 1376 MRIHDRKRFPLIVAASFVNIPYNLGGLTRTCEIFNADRLVMPDNRVLQSKEYKGVSVSSE 1435 Query: 184 LEHIPYIRISNLT---DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 I ++K + PL++ ++ L+LG E +G+ Sbjct: 1436 RWMHFDIVKPEDELVEYLVRKRREGYTIVGLEQTAESVPLQEYTFPERTVLVLGEERRGI 1495 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 PK + G+ ++LNV +AA+A+Y Sbjct: 1496 SPKVLAVIDRCVEIPQFGVTRSLNVHVSAAIAIYAYVRCR 1535 >gi|221308732|ref|ZP_03590579.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str. 168] gi|221313055|ref|ZP_03594860.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317980|ref|ZP_03599274.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221322254|ref|ZP_03603548.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str. SMY] gi|1381681|gb|AAB02738.1| CspR [Bacillus subtilis subsp. subtilis str. JH642] Length = 157 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + + ++ +L ++ E + + Sbjct: 1 MALHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQET-AT 249 +L + + F I + ++ + G E GL + Sbjct: 61 HDSLEELFEAYKKGKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNNMD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 L M +++LN+SN AA+ +Y Sbjct: 121 RCLRLPMTEHVRSLNLSNTAAILVYEALRQQN 152 >gi|255693302|ref|ZP_05416977.1| RNA methylase, SpoU family [Bacteroides finegoldii DSM 17565] gi|260620877|gb|EEX43748.1| RNA methylase, SpoU family [Bacteroides finegoldii DSM 17565] Length = 175 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 3/159 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 V L++VLD + HNIG++ R++ AF + I + + K+A GA Sbjct: 16 EFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + ++N DA+ + + G+ + + E K K A+++G E KG++ Sbjct: 76 FTVDWKYVNNAVDAVDNLKNEGYIVYSVEQAEGSIMLDELELDKTRKYAIVMGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + + G +LNVS + ++ Sbjct: 136 QEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFKKL 174 >gi|317121641|ref|YP_004101644.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM 12885] gi|315591621|gb|ADU50917.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM 12885] Length = 153 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 49/148 (33%), Gaps = 3/148 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL N G + R+ + +L ++ H+ + Sbjct: 1 MFHVVLVAPEIAPNTGNVARTCAVTGARLHLVRPLGFRLSDRLLKRAGMDYWNHVEWHVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251 + L + F + + AL+ G+E +GL P+ ++ Sbjct: 61 DTWDELLAALPEARFCYLEPDG--SQRYTDVTFRPGDALVFGSESRGLPPEFLRQRPGPT 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+++ A+ LY Sbjct: 119 LRVPMRPGLRSLNLASTVALVLYEAYRQ 146 >gi|57650645|ref|YP_186738.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL] gi|87160191|ref|YP_494488.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195679|ref|YP_500485.1| hypothetical protein SAOUHSC_01988 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221959|ref|YP_001332781.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|161510073|ref|YP_001575732.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142161|ref|ZP_03566654.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452654|ref|ZP_05700653.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A5948] gi|262050147|ref|ZP_06023001.1| hypothetical protein SAD30_1111 [Staphylococcus aureus D30] gi|262052684|ref|ZP_06024876.1| hypothetical protein SA930_0820 [Staphylococcus aureus 930918-3] gi|282924188|ref|ZP_06331863.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A9765] gi|284024902|ref|ZP_06379300.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132] gi|294850285|ref|ZP_06791020.1| RNA methyltransferase [Staphylococcus aureus A9754] gi|304380541|ref|ZP_07363216.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57284831|gb|AAW36925.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus COL] gi|87126165|gb|ABD20679.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203237|gb|ABD31047.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374759|dbj|BAF68019.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160368882|gb|ABX29853.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257859629|gb|EEV82478.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A5948] gi|259159433|gb|EEW44485.1| hypothetical protein SA930_0820 [Staphylococcus aureus 930918-3] gi|259161772|gb|EEW46360.1| hypothetical protein SAD30_1111 [Staphylococcus aureus D30] gi|269941326|emb|CBI49723.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus TW20] gi|282592983|gb|EFB97985.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A9765] gi|294822901|gb|EFG39335.1| RNA methyltransferase [Staphylococcus aureus A9754] gi|302751664|gb|ADL65841.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340870|gb|EFM06795.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196795|gb|EFU27139.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus CGS01] gi|320141294|gb|EFW33139.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus MRSA131] gi|320143578|gb|EFW35358.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus MRSA177] gi|329314531|gb|AEB88944.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus T0131] gi|329729497|gb|EGG65899.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus 21189] Length = 156 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 1/149 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ +L ++ E + Sbjct: 1 MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 ++ + + + + + + I G E GL +E + Sbjct: 61 HDSIEAFFEVTNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDT 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN AA+ +Y Sbjct: 121 ALRIPMSEHIRSLNLSNTAALLIYEALRQ 149 >gi|296391977|ref|ZP_06881452.1| putative rRNA methylase [Pseudomonas aeruginosa PAb1] gi|313110168|ref|ZP_07796068.1| putative rRNA methylase [Pseudomonas aeruginosa 39016] gi|310882570|gb|EFQ41164.1| putative rRNA methylase [Pseudomonas aeruginosa 39016] Length = 153 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G I+R C + + L ++ E+ R Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVRRY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 +L L+ + ++ + + A + G E +GL + Sbjct: 61 PDLQSCLEA--LGQPRLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEDVRNALPTDR 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN AV +Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVTVYEAWRQL 148 >gi|268608521|ref|ZP_06142248.1| RNA methyltransferase [Ruminococcus flavefaciens FD-1] Length = 165 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 48/150 (32%), Gaps = 3/150 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 L +VL P N G I R+ + L ++ + + Sbjct: 1 MHNLNIVLVEPQIPQNTGNISRTCAVTGARLHLVRPLGFEVSDKHLKRAGLDYWDKLDIT 60 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT 249 +L+D K F D LI G E KGL + Sbjct: 61 YYDDLSDFFDKNKDGHFYYFTTKG--LHVHSDIDYPDNSYLIFGREDKGLPESLLHDNPG 118 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M +++LN+SN+ A+A+Y Sbjct: 119 FCARIPMRNELRSLNLSNSVAIAVYEVLRQ 148 >gi|296128722|ref|YP_003635972.1| rRNA (adenosine-2'-O-)-methyltransferase [Cellulomonas flavigena DSM 20109] gi|296020537|gb|ADG73773.1| rRNA (adenosine-2'-O-)-methyltransferase [Cellulomonas flavigena DSM 20109] Length = 264 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 34/251 (13%), Positives = 85/251 (33%), Gaps = 4/251 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R+ +++ ++ + + L + ++ AL + + Sbjct: 7 SRSDPQVQRIDDLVRRP--RAATKTLLVEDPEPLTHALGAGLEVLGVYALEGADVGPGLG 64 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 A ++ V P +++ E + + P + D ++VLD V Sbjct: 65 AAARTRGVAIQEVAPAVWNELFRGERKPDVVGVARTPRPTSLADLAGRPGDVVVLDGVRI 124 Query: 144 PHNIGAILRS-AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 N+GA +R+ + ++ + + +++ G + +P + + Sbjct: 125 VGNVGAAVRTAYALGAAGVVLVDSDLAHPLDRRVVRASRGYVFSLPVVLATREEATAALR 184 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 ++ + +++AL+ G+E +G + A + M + Sbjct: 185 ELDVPLVAFEAAGELGTGDLAALGERLALVFGSEKRGASAELTAGA-RTVSIPMRTAADS 243 Query: 263 LNVSNAAAVAL 273 LNVS A +AL Sbjct: 244 LNVSVAVGIAL 254 >gi|226492595|ref|NP_001151868.1| LOC100285504 [Zea mays] gi|195650445|gb|ACG44690.1| trmH family tRNA/rRNA methyltransferase [Zea mays] gi|238006410|gb|ACR34240.1| unknown [Zea mays] Length = 220 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALN 264 +D +P+ A + G EG GL K E ++ G +LN Sbjct: 76 CDICGVEITDDAQPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVYIPQYGGGTASLN 135 Query: 265 VSNAAAVALYIT 276 V+ AA++ L+ Sbjct: 136 VTVAASIVLHHF 147 >gi|195644564|gb|ACG41750.1| hypothetical protein [Zea mays] Length = 163 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALN 264 +D +P+ A + G EG GL K E ++ G +LN Sbjct: 76 CDICGVEITDDAQPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVYIPQYGGGTASLN 135 Query: 265 VSNAAAVALYIT 276 V+ AA++ L+ Sbjct: 136 VTVAASIVLHHF 147 >gi|195628230|gb|ACG35945.1| hypothetical protein [Zea mays] Length = 163 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALN 264 +D +P+ A + G EG GL K E ++ G +LN Sbjct: 76 CDICGVEITDDAQPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVYIPQYGGGTASLN 135 Query: 265 VSNAAAVALYIT 276 V+ AA++ L+ Sbjct: 136 VTVAASIVLHHF 147 >gi|330505488|ref|YP_004382357.1| RNA methyltransferase [Pseudomonas mendocina NK-01] gi|328919774|gb|AEB60605.1| RNA methyltransferase [Pseudomonas mendocina NK-01] Length = 153 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G I+R C + + L ++ E+ R Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANSGCQLHLIEPLGFELDDKRLRRAGLDYHEYATLKRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 S+L L+ + ++ +P + A + G E +GL + + Sbjct: 61 SDLQSCLEA--LGHPRLFAFTTKGSQPFHEIAYQPGDAFLFGPESRGLPEEVRNALPPQQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV +Y Sbjct: 119 RVRLPMRAGCRSLNLSNTVAVTVYEAWRQ 147 >gi|33240822|ref|NP_875764.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238351|gb|AAQ00417.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 264 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 70/233 (30%), Gaps = 16/233 (6%) Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 AL +R + + L+ +P + +V + + + ++ Sbjct: 30 EALQTGARPSEIVATPEWIEDNLELLKRIPSQVKLNSVTQSVLQASLTTVNPNGVASIFP 89 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES----- 173 +L D ++ LD + DP N+G + R+A+A D + P Sbjct: 90 LSVLPQPSDQSN---FVLALDRLQDPGNLGTLFRTALAADVDLVWLALGADPLGQKVLRS 146 Query: 174 --------AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + + + P + Sbjct: 147 SAGAVLKLPFQRLGGAEKHSINELVEKLEKARKQGFQIVGTYSPNSCHVLAVSPYWELDW 206 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+LG EG G+ P Q+ T L +++LNV++AA L Sbjct: 207 TKPTVLVLGNEGDGVHPTIQDCCTHSVSLPHNQQVESLNVASAAVPLLLERLR 259 >gi|113972063|ref|YP_735856.1| RNA methyltransferase [Shewanella sp. MR-4] gi|117922366|ref|YP_871558.1| RNA methyltransferase [Shewanella sp. ANA-3] gi|113886747|gb|ABI40799.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp. MR-4] gi|117614698|gb|ABK50152.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp. ANA-3] Length = 154 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 43/150 (28%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R + E L ++ + R Sbjct: 1 MFHIALYEPEIAPNTGNIIRLCANNGSQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 N L+ M +P + L+ G E +GL E+ Sbjct: 61 KNFDAFLEAMAGKRIMACTTKG--SRPHTELSFAKDDVLLFGPETRGLPMPIIESIPTEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ Y Sbjct: 119 RLRIPMAATSRSLNLSNAVAIISYEAWRQL 148 >gi|302672183|ref|YP_003832143.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus B316] gi|302396656|gb|ADL35561.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316] Length = 166 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 1/99 (1%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G + G + ++ +KK ++ G E G+ Sbjct: 47 GMDYWQHLDVTRYVDYQDFLEKHPGAKIWMATTKAKKCYTDVQFGMDDFIMFGKESAGIP 106 Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + + M I++LN+SN+ A+ LY Sbjct: 107 EEILVDNEENCIRIPMGSDIRSLNLSNSVAIVLYEALRQ 145 >gi|117618548|ref|YP_854721.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559955|gb|ABK36903.1| RNA methyltransferase, TrmH family, group 2 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 168 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 4/155 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L +VL P N G I+R + + + ++ H Sbjct: 8 HQDAVMLDIVLYQPEIPPNTGNIIRLCANTGYRLHLIEPLGFEWDDKRVKRAGLDY--HE 65 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + ++ + AL+ G E +GL + E+ Sbjct: 66 FAEVKRWPNFEAFLEAVAPTRVFACTTKGRTAHSAVQFAAGDALLFGPESRGLPIEIIES 125 Query: 248 A--TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N++NA AV +Y + Sbjct: 126 LPFEQRLRIPMLPQSRSMNLANAVAVFVYESWRQL 160 >gi|51245784|ref|YP_065668.1| rRNA methylase homolog (CspR) [Desulfotalea psychrophila LSv54] gi|50876821|emb|CAG36661.1| probable rRNA methylase homolog (CspR) [Desulfotalea psychrophila LSv54] Length = 165 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 48/162 (29%), Gaps = 4/162 (2%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 S L +VL P N G+I R A + + ++ L ++ Sbjct: 1 MTTYRCPTVDYTSHLNIVLVEPEIPPNTGSIARLCGATNAILHLVHPLGFSTDDKHLRRA 60 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 + + + + L + ++ LI G E KG Sbjct: 61 GLDYWKFVNIVYWESFEAFLSQCDKDNMYFFTTKTEKSYTE--AKFKQGDFLIFGKETKG 118 Query: 240 LRPKTQE-TATSMAHLHM-PGIIKALNVSNAAAVALYITQNH 279 L + L M I++LN++ A + LY Sbjct: 119 LPKPILDLHPDRCLTLPMPNPNIRSLNLAMTAGIVLYEAMRQ 160 >gi|120435451|ref|YP_861137.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117577601|emb|CAL66070.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 217 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 47/145 (32%), Gaps = 1/145 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L +V V HN A++RS F I + P + Sbjct: 28 QRTDHLTVVAQDVYQLHNTSAVVRSCDVFGIQNIHVIEEKIPRRIDKEIAMGAQ-KWVDI 86 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 S T D + LE + AL G E GL + A Sbjct: 87 NRYTSTTTCLKNLKKKGYRIVATSPHDDSQLLEDFDISTPAALFFGTEKDGLSEEVMREA 146 Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273 + + M G ++LN+S +AA+ L Sbjct: 147 DATVKIPMVGFTESLNISVSAAIIL 171 >gi|251791594|ref|YP_003006315.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya zeae Ech1591] gi|247540215|gb|ACT08836.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya zeae Ech1591] Length = 154 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R A C + E L ++ H Sbjct: 1 MFHIALYEPQIAPNTGNIIRLAANNGCSLHLIEPLGFDFEEKKLRRAGLDY--HDLANVS 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 + G + ++ +P ++ L+ G+E GL + + Sbjct: 59 RHRNYQDFLQAVAGQRIFACTTKGSRPYDEPDYQPGDVLLFGSETAGLPEAIRNGFAPEN 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN+ A+ Y Sbjct: 119 RIRIPMEPDCRSLNLSNSVAIISYEAWRQ 147 >gi|322822058|gb|EFZ28222.1| hypothetical protein TCSYLVIO_5548 [Trypanosoma cruzi] Length = 1716 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 57/160 (35%), Gaps = 2/160 (1%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--YSPSESAVLAKS 179 L + L+++ + +P N+ + R F+ + ++ + + ++ A+S Sbjct: 1551 HPRALKQEKRQPLIVLSSLLQNPVNVAGLFRCGEIFTIEKVVVSDQAVFAHPHFVAAARS 1610 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 A + + + + + ++ A++LGAEG G Sbjct: 1611 AELWMPWDAVMAKNLPEYLGSLRQDGYTLIGIEQTAGSVSIASYRFPERAAILLGAEGHG 1670 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + G+I++LNV A+ +Y Sbjct: 1671 VPAELLPVLDVCVEIPQFGLIRSLNVHVTGALVMYEYTRQ 1710 >gi|239993570|ref|ZP_04714094.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii ATCC 27126] Length = 154 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + + ++ H Sbjct: 1 MLDIVLYQPEIPPNTGNIIRLCANSGFMLHLIEPLGFEWDDKRVRRAGLDY--HEFAHVK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + ++ K ALI G E +GL ++ Sbjct: 59 RHANLDAYLNDAKPKRVFACTTKGKAFHSDVSYEKGDALIFGPETRGLPDDYIQSLPPEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y + F Sbjct: 119 RVRIPMLPDSRSMNLSNAVSVFVYESWRQF 148 >gi|313680687|ref|YP_004058426.1| tRNA/rRNA methyltransferase (spou) [Oceanithermus profundus DSM 14977] gi|313153402|gb|ADR37253.1| tRNA/rRNA methyltransferase (SpoU) [Oceanithermus profundus DSM 14977] Length = 149 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 57/144 (39%), Gaps = 2/144 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N+G + R+A A + + L ++ H+ Y+ + Sbjct: 4 IVLYEPEIPQNVGNVARTAAATRTELHLVRPFGFRWGDPRLKRAGLDYWPHVRYVLHDSW 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 T L+ + + + ++ L + + L+ G E +GL + + Sbjct: 64 TAFLEALPAGARVWAFSTKA-ERSLYEVRFHPDDYLLFGPETRGLPQAVLARFPA-LRIP 121 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 MPG +++LN++ + VA+Y Sbjct: 122 MPGPVRSLNLAVSVGVAVYEVLRQ 145 >gi|260548986|ref|ZP_05823208.1| rRNA methylase [Acinetobacter sp. RUH2624] gi|260408154|gb|EEX01625.1| rRNA methylase [Acinetobacter sp. RUH2624] Length = 157 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 3/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I+R + + L ++ E Sbjct: 1 MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60 Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--T 249 N+ L + S G + + ++ N +AL++G E +GL + Sbjct: 61 DNIEACLADLKSKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRLMFPQE 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV +Y Sbjct: 121 QWIRLPMAENSRSLNLSNATAVIVYEAWRQ 150 >gi|224138732|ref|XP_002326676.1| predicted protein [Populus trichocarpa] gi|222833998|gb|EEE72475.1| predicted protein [Populus trichocarpa] Length = 1224 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K L+LG E +G+ + + G++++LNV + A+AL+ Sbjct: 1163 HHAFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1220 >gi|15924845|ref|NP_372379.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus Mu50] gi|15927429|ref|NP_374962.1| hypothetical protein SA1672 [Staphylococcus aureus subsp. aureus N315] gi|21283525|ref|NP_646613.1| hypothetical protein MW1796 [Staphylococcus aureus subsp. aureus MW2] gi|49484097|ref|YP_041321.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49486674|ref|YP_043895.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82751510|ref|YP_417251.1| rRNA methylase-like protein [Staphylococcus aureus RF122] gi|156980171|ref|YP_001442430.1| hypothetical protein SAHV_1840 [Staphylococcus aureus subsp. aureus Mu3] gi|253315186|ref|ZP_04838399.1| hypothetical protein SauraC_03248 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732513|ref|ZP_04866678.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253735264|ref|ZP_04869429.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|255006643|ref|ZP_05145244.2| hypothetical protein SauraM_09240 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425967|ref|ZP_05602391.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257428632|ref|ZP_05605030.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257431269|ref|ZP_05607646.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397] gi|257433949|ref|ZP_05610307.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410] gi|257436865|ref|ZP_05612909.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus M876] gi|258413723|ref|ZP_05681996.1| SpoU rRNA methylase [Staphylococcus aureus A9763] gi|258423133|ref|ZP_05686027.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A9635] gi|258438431|ref|ZP_05689715.1| SpoU rRNA methylase [Staphylococcus aureus A9299] gi|258443876|ref|ZP_05692215.1| SpoU rRNA methylase [Staphylococcus aureus A8115] gi|258447331|ref|ZP_05695478.1| RNA methyltransferase [Staphylococcus aureus A6300] gi|258448186|ref|ZP_05696313.1| SpoU rRNA methylase [Staphylococcus aureus A6224] gi|258453381|ref|ZP_05701364.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A5937] gi|269203492|ref|YP_003282761.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98] gi|282895154|ref|ZP_06303373.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A8117] gi|282904430|ref|ZP_06312318.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus C160] gi|282906253|ref|ZP_06314108.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus subsp. aureus Btn1260] gi|282909172|ref|ZP_06316990.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911478|ref|ZP_06319280.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282914651|ref|ZP_06322437.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus M899] gi|282917125|ref|ZP_06324883.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus aureus subsp. aureus D139] gi|282919616|ref|ZP_06327351.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus aureus subsp. aureus C427] gi|282924996|ref|ZP_06332662.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus C101] gi|282928594|ref|ZP_06336193.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A10102] gi|283770939|ref|ZP_06343831.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus subsp. aureus H19] gi|283958608|ref|ZP_06376059.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus A017934/97] gi|293503722|ref|ZP_06667569.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus 58-424] gi|293510743|ref|ZP_06669448.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus M809] gi|293537285|ref|ZP_06671965.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus M1015] gi|295428433|ref|ZP_06821062.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296276987|ref|ZP_06859494.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1] gi|297207427|ref|ZP_06923864.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297590600|ref|ZP_06949238.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|300911511|ref|ZP_07128956.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|13701648|dbj|BAB42941.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247627|dbj|BAB58017.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus Mu50] gi|21204966|dbj|BAB95661.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49242226|emb|CAG40933.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49245117|emb|CAG43583.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82657041|emb|CAI81478.1| rRNA methylase homolog [Staphylococcus aureus RF122] gi|156722306|dbj|BAF78723.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253723794|gb|EES92523.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726671|gb|EES95400.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|257271661|gb|EEV03807.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257275473|gb|EEV06960.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278217|gb|EEV08865.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397] gi|257282042|gb|EEV12179.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410] gi|257284216|gb|EEV14339.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus M876] gi|257839510|gb|EEV63981.1| SpoU rRNA methylase [Staphylococcus aureus A9763] gi|257846697|gb|EEV70717.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A9635] gi|257848475|gb|EEV72466.1| SpoU rRNA methylase [Staphylococcus aureus A9299] gi|257851282|gb|EEV75225.1| SpoU rRNA methylase [Staphylococcus aureus A8115] gi|257853918|gb|EEV76874.1| RNA methyltransferase [Staphylococcus aureus A6300] gi|257858425|gb|EEV81301.1| SpoU rRNA methylase [Staphylococcus aureus A6224] gi|257864473|gb|EEV87218.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A5937] gi|262075782|gb|ACY11755.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98] gi|282313362|gb|EFB43758.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus C101] gi|282317426|gb|EFB47800.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus aureus subsp. aureus C427] gi|282319612|gb|EFB49964.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus aureus subsp. aureus D139] gi|282321832|gb|EFB52157.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus M899] gi|282325173|gb|EFB55483.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327436|gb|EFB57731.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331545|gb|EFB61059.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus subsp. aureus Btn1260] gi|282589803|gb|EFB94888.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A10102] gi|282596048|gb|EFC01012.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus C160] gi|282762498|gb|EFC02639.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A8117] gi|283461086|gb|EFC08176.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus subsp. aureus H19] gi|283471126|emb|CAQ50337.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus ST398] gi|283790757|gb|EFC29574.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus A017934/97] gi|285817535|gb|ADC38022.1| tRNA (cytosine34-2-O-)-methyltransferase [Staphylococcus aureus 04-02981] gi|290920130|gb|EFD97198.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus M1015] gi|291095388|gb|EFE25653.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus 58-424] gi|291466634|gb|EFF09155.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus M809] gi|295127833|gb|EFG57470.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887890|gb|EFH26786.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297575486|gb|EFH94202.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|298695124|gb|ADI98346.1| rRNA methylase -like protein [Staphylococcus aureus subsp. aureus ED133] gi|300887143|gb|EFK82343.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|312437680|gb|ADQ76751.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60] gi|312830227|emb|CBX35069.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315195767|gb|EFU26154.1| hypothetical protein CGSSa00_08920 [Staphylococcus aureus subsp. aureus CGS00] gi|323438849|gb|EGA96586.1| rRNA methylase-like protein [Staphylococcus aureus O11] gi|323441693|gb|EGA99338.1| rRNA methylase-like protein [Staphylococcus aureus O46] gi|329732977|gb|EGG69321.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus 21193] Length = 156 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 1/149 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ +L ++ E + Sbjct: 1 MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 ++ + + + + + + I G E GL +E + Sbjct: 61 HDSIEAFFEATNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDT 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN AA+ +Y Sbjct: 121 ALRIPMSEHIRSLNLSNTAALLIYEALRQ 149 >gi|124023679|ref|YP_001017986.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9303] gi|123963965|gb|ABM78721.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9303] Length = 275 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 84/280 (30%), Gaps = 41/280 (14%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHT-----------VSAALNNPSRKIFQLL 72 R + ++++ + G + L R + Sbjct: 4 SRRNPLVRRLKFLASR------------EGRQEQSLLLLEGTHLLQEVLRTTHRPKEIVA 51 Query: 73 ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132 D LP + V P ++ + + +L L ++ + Sbjct: 52 TNFWLERHGDLVQALPAETLIHLVTPSVLEASLTTVSPDGVASLVPLDSLPQAVNQAK-- 109 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-------------ESAVLAKS 179 ++ LD + DP N+G +LR+A+A + + P + Sbjct: 110 -FVLALDRLQDPGNLGTLLRTALAAEVEAVWLASGADPLSPKVLRASAGAILQLPHERFG 168 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 +SG + ++ S P Q L+LG EG G Sbjct: 169 SSGQEAVEQLAEQLECAASRGLQVVATMVPASSAAHSCLPYWQLDWRKPTVLVLGNEGSG 228 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAV-ALYITQN 278 L P+ QE T L +++LNV+ A AV L + Sbjct: 229 LHPRLQECCTDCVTLPHSAAVESLNVA-AVAVPLLLERRR 267 >gi|262376672|ref|ZP_06069900.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] gi|262308382|gb|EEY89517.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] Length = 158 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 5/152 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I+R + + L ++ E+ Sbjct: 1 MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEYANMQIW 60 Query: 193 SNLTDALQKMHSWG---FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA- 248 N+ D L + S G L++ + N +AL++G E +GL + Sbjct: 61 ENIEDCLADLASKGIGLDAIYPLTTKGSETPHTSDLNRPVALLMGPETRGLPEHVRLMFP 120 Query: 249 -TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV +Y Sbjct: 121 QKHWIRLPMAENSRSLNLSNATAVIVYEAWRQ 152 >gi|255767208|ref|NP_388774.2| rRNA methylase [Bacillus subtilis subsp. subtilis str. 168] gi|269969434|sp|O31590|TRML_BACSU RecName: Full=Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase CspR gi|225184835|emb|CAB12721.2| putative rRNA methylase [Bacillus subtilis subsp. subtilis str. 168] Length = 160 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 2/155 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + L +VL P N G I R+ A + + ++ +L ++ E + Sbjct: 1 MNIVALHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVN 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQET 247 + +L + + F I + ++ + G E GL + Sbjct: 61 VVYHDSLEELFEAYKKGKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQN 120 Query: 248 -ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 L M +++LN+SN AA+ +Y Sbjct: 121 NMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQN 155 >gi|332299307|ref|YP_004441228.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica DSM 20707] gi|332176370|gb|AEE12060.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica DSM 20707] Length = 184 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 3/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG---IITTKRYSPSESAVLAKSASGALEH 186 L ++LD+V HN+G+I R+A AF + + T A A A+ Sbjct: 23 PKVPLTILLDNVRSMHNVGSIFRTADAFRLEELLLVGITGCPPHPLIHKTAIGAEEAVPW 82 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + + + + + LI+G E G+ + + Sbjct: 83 RHLDSAIEFLEQCRAAGRTILALEQTHQSIPLGNQPALDDRGAVLIVGNEVHGISDEVIQ 142 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276 A + G +LNVS A +A+Y Sbjct: 143 YADYCLEIPQYGTKHSLNVSVATGIAIYDL 172 >gi|326773466|ref|ZP_08232749.1| SpoU rRNA methylase family protein [Actinomyces viscosus C505] gi|326636696|gb|EGE37599.1| SpoU rRNA methylase family protein [Actinomyces viscosus C505] Length = 168 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 2/97 (2%) Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + + + + +S +++ Q AL+ G E GL + Sbjct: 66 YHDLANTRVHATWQECLEQIPGRIFAFTSHTERLYTQVDWRGDDALLFGPEPTGLPQEIL 125 Query: 246 ET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + ++ + M ++LN++N+AA+ LY Sbjct: 126 DHPRVSAHLRIPMVEGNRSLNLANSAAIGLYEAWRSL 162 >gi|146302736|ref|YP_001197327.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] gi|146157154|gb|ABQ08008.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] Length = 220 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 1/145 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R + ++ V HN A++RS F + + + + Sbjct: 28 NRTKHFTIAVEDVYQMHNTSAVMRSCEVFGIQELNIIE-QRFGKRIDKEIALGAQKWVDI 86 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + ++ ++ + AL G E GL P+ E A Sbjct: 87 NRFDTVDGCISSLRDKGYQIIATTPHENDCLIQDFDISKPSALFFGTEKDGLSPEILEKA 146 Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273 + M G ++LN+S +AA+ + Sbjct: 147 DGFLKIPMVGFTESLNISVSAAIII 171 >gi|313634054|gb|EFS00734.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri FSL N1-067] gi|313638638|gb|EFS03765.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri FSL S4-171] Length = 169 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + ++ +L ++ +++ Sbjct: 1 MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLTY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQETAT- 249 ++ D +K H F I K I G E GL + + Sbjct: 61 YDSMDDFFEKNHGGEFYYITKFGRHLYSDIDYSDTAKDYFFIFGKETTGLPDELLQANEE 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M I++LN+SN AAV Y Sbjct: 121 HCLRIPMTDHIRSLNLSNTAAVLAYEALRQQN 152 >gi|269140796|ref|YP_003297497.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202] gi|267986457|gb|ACY86286.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202] gi|304560556|gb|ADM43220.1| tRNA (cytosine34-2'-O-)-methyltransferase [Edwardsiella tarda FL6-60] Length = 156 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIEPLGFTWDDKRLRRAGLDY--HEFASIR 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + L++ + D L+ G E +GL ++ A Sbjct: 59 RHHDYSAFLDGEKPTRLFALTTKGTPAHSEVTYRDGDYLLFGPETRGLPSTILDSLPAAQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMLASSRSMNLSNAVSVVVYEAWRQL 148 >gi|262366971|gb|ACY63528.1| tRNA/rRNA methyltransferase [Yersinia pestis D182038] Length = 213 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 75/207 (36%), Gaps = 7/207 (3%) Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL--- 134 R + V + K G E H G+ + Q Sbjct: 4 RFREALKWMAANRKAYHVVEEDELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAK 62 Query: 135 --LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++ L+ V +PHN+G I+R+ F +G++ + + ES ++A G EHI I Sbjct: 63 DCVLALEEVGNPHNLGGIMRTCAHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINA 121 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + L G+ + SS L + K+ L+LG E GL + Sbjct: 122 DDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSV 181 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + G +++LNVS A + L Sbjct: 182 SIGGTGRVESLNVSVATGILLAEWWRQ 208 >gi|168061044|ref|XP_001782501.1| predicted protein [Physcomitrella patens subsp. patens] gi|162665986|gb|EDQ52653.1| predicted protein [Physcomitrella patens subsp. patens] Length = 222 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 33/93 (35%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + ++ + + + ++ A+I G E KG + Sbjct: 101 WLDAEMWENSSDCIATLRKRGYRIAVTHIAPNTVSIQDMDWTIPTAVIFGNEYKGASEEA 160 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + M G++++ NVS AA + ++ Sbjct: 161 VKQSDIRCCIPMGGMVESFNVSVAAGIIMHHAA 193 >gi|238798831|ref|ZP_04642300.1| Methyltransferase [Yersinia mollaretii ATCC 43969] gi|238717339|gb|EEQ09186.1| Methyltransferase [Yersinia mollaretii ATCC 43969] Length = 167 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 47/158 (29%), Gaps = 10/158 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R C + + L ++ E Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFASIKHH 60 Query: 193 SNLTDALQKMH--------SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + L + + L++ L+ G E +GL Sbjct: 61 HDYQAFLDSEKLDGAQSAGATPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPATV 120 Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + M +++N+SNA +V +Y Sbjct: 121 LDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 158 >gi|332520835|ref|ZP_08397295.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] gi|332043365|gb|EGI79561.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] Length = 220 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 50/178 (28%), Gaps = 8/178 (4%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 + + ++ + H+ + R + + V HN A++RS Sbjct: 2 IDKKLLEHLETYLTDHR-------LQRFYKVLEQRTKHFTVATEDVYQLHNTSAVIRSCD 54 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 F + + + + + Sbjct: 55 VFGIQEVNIVEEVNAKRIDREIAMGAQ-KWVDLNRYHTVKDAIQDVKQKGYQVVATTPHA 113 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + L K G E +GL + + A + M G ++LN+S +AA+ L Sbjct: 114 NDCNLRDFDVTKKSCFFFGRETEGLSQEVLDEADVFLKIPMVGFTESLNISVSAAIIL 171 >gi|256823506|ref|YP_003147469.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069] gi|256797045|gb|ACV27701.1| RNA methyltransferase, TrmH family, group 2 [Kangiella koreensis DSM 16069] Length = 153 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 3/145 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I+R + + + ++ H ++ Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGFQLHLIKPLGFEIDDKKMRRAGLDY--HEWAQVKTHE 61 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254 + + GLS+ +K Q D L+ G E +GL + + + Sbjct: 62 NYQEFLNNEQPKRLFGLSTKAKHYFHQIAYQDGDYLMFGPETRGLPNHILNDIGEQLLRI 121 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 M ++LN+SN A+ Y Sbjct: 122 PMRPDSRSLNLSNTVAIVTYEVLRQ 146 >gi|119946907|ref|YP_944587.1| RNA methyltransferase [Psychromonas ingrahamii 37] gi|119865511|gb|ABM04988.1| RNA methyltransferase, TrmH family, group 2 [Psychromonas ingrahamii 37] Length = 154 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + L P N GAI+R C + + + ++ H Sbjct: 1 MIEIALFEPEIPQNTGAIIRLCANTGCVLHLIEPLGFDLDEKKVRRAGLDY--HELTHVY 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + G + ++ + Q L+ G E +GL + + Sbjct: 59 RHKNYNDFLQAVSGKRIFACTTKTTTFHSQANFQADDVLLFGPETRGLPGEILDALPLEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KLRIPMRAESRSMNLSNAVSVFVYEAWRQL 148 >gi|104779663|ref|YP_606161.1| RNA methyltransferase [Pseudomonas entomophila L48] gi|95108650|emb|CAK13344.1| putative RNA methyltransferase, TrmH family, group 2 [Pseudomonas entomophila L48] Length = 153 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G I+R C + + L ++ E+ R Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANSGCALHLIEPISFELDDKRLRRAGLDYHEYATLKRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 +L L+ + ++ P + A + G E +GL + ++ A Sbjct: 61 ESLAGCLES--LGNPRLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEVLDSLPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV +Y Sbjct: 119 RLRLPMRPGCRSLNLSNTVAVTVYEAWRQ 147 >gi|323307222|gb|EGA60505.1| Mrm1p [Saccharomyces cerevisiae FostersO] Length = 295 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 51/282 (18%), Positives = 89/282 (31%), Gaps = 57/282 (20%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++YG ++V AAL NPSR L + + V ++ + Sbjct: 8 EYVYGTNSVYAALLNPSRNCHSRLLYHGTIPSKILQXVDEMKVTTELVDKHRLNLLTNYG 67 Query: 109 AVH---------------------------------QGLALETAPLLSPTLDAVRNSQLL 135 + L T + L Sbjct: 68 VHNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLG 127 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA------------ 183 + LD + DPHNIGAI+RSA D I+ ++R + V++K++SGA Sbjct: 128 LYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKP 187 Query: 184 --LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 ++ + + S L + L++G E +G+R Sbjct: 188 LEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVR 247 Query: 242 PKTQETATSMAHLHMPG----------IIKALNVSNAAAVAL 273 + + + G I+ +LNVS A A+ + Sbjct: 248 TNLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 289 >gi|226324158|ref|ZP_03799676.1| hypothetical protein COPCOM_01937 [Coprococcus comes ATCC 27758] gi|225207707|gb|EEG90061.1| hypothetical protein COPCOM_01937 [Coprococcus comes ATCC 27758] Length = 165 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 7/150 (4%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I R+ VA + + L ++ EH+ Sbjct: 1 MLNIVLFEPEIPANTGNIGRTCVATNTRLHLIEPLGFRLNEKNLKRAGMDYWEHLDVTTY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 + D ++K S + ++ G E G+ + Sbjct: 61 IDYRDFMEKNPGAKIYMATTKSPNLYTD--VKYEPDCYIMFGKESAGIPEEIL--CHHKK 116 Query: 252 --AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G I++LN+ N+ A+ LY Sbjct: 117 DSIRIPMIGDIRSLNLGNSVAIVLYEALRQ 146 >gi|123440483|ref|YP_001004477.1| putative methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332159708|ref|YP_004296285.1| putative methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122087444|emb|CAL10225.1| putative methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318603808|emb|CBY25306.1| tRNA (cytosine34-2'-O-)-methyltransferase [Yersinia enterocolitica subsp. palearctica Y11] gi|325663938|gb|ADZ40582.1| putative methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330858932|emb|CBX69294.1| uncharacterized tRNA/rRNA methyltransferase yibK [Yersinia enterocolitica W22703] Length = 167 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 10/158 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R C + + L ++ E Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHH 60 Query: 193 SNLTDALQKMH--------SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + L + + + L++ L+ G E +GL Sbjct: 61 HDYQAFLDSENLDGAQSAGTNPARLFALTTKGTPAHSAVNYQVNDYLLFGPETRGLPSNV 120 Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + M +++N+SNA +V +Y Sbjct: 121 LDALPAQQKIRIPMLAASRSMNLSNAVSVVVYEAWRQL 158 >gi|162449973|ref|YP_001612340.1| rRNA methylase (SpoU class) [Sorangium cellulosum 'So ce 56'] gi|161160555|emb|CAN91860.1| rRNA methylase (SpoU class) [Sorangium cellulosum 'So ce 56'] Length = 152 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 L A + H + S+ + + AL+ G E GL P+ Sbjct: 47 YWHLVTLEQQLDIAHFRHHHPNARLRLFSAVAPRSYLDADFRPGDALVFGKESVGLDPEL 106 Query: 245 QETA-TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + G +++LN++NA ++ LY Sbjct: 107 LARMPDDVFGIPTLGPVRSLNLANAVSIVLYEALRQ 142 >gi|281343848|gb|EFB19432.1| hypothetical protein PANDA_012560 [Ailuropoda melanoleuca] Length = 366 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 81/231 (35%), Gaps = 31/231 (13%) Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQ 133 A PV Q +D + + VHQG+ +E +PL Q Sbjct: 94 ELLRAAEARDIPVLRPRRQKLDALC-RSQVHQGVCMEVSPLKPRPWTEVGEARPGDDPQQ 152 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP----SESAVLAKSASGALEHIPY 189 L +VL+ + DP N+GA+LRSA D IIT+ R + L S A Sbjct: 153 LWLVLERIQDPRNLGALLRSAHFLGVDKIITSGRNRHGRPLVPTCPLTPVVSKASAGAME 212 Query: 190 IRISNL---------------TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + G + S + + + L+LG Sbjct: 213 VMDVFSTDDLAGFLQAKAREGWLVAGTVGCPGPEISPSSEIPITSCLEFLWDRPTLLVLG 272 Query: 235 AEGKGLRPKTQETATSMAHL-H---MPGIIKALNVSNAAAVALYITQNHFA 281 EG GL Q + + + +P +++LNVS AA + L+ + Sbjct: 273 NEGSGLSQAVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICSQRK 323 >gi|295133953|ref|YP_003584629.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] gi|294981968|gb|ADF52433.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] Length = 217 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R + + + V HN A++RS F I + P + + Sbjct: 28 QRTNHITVATQDVYQLHNTSAVIRSCDVFGIQNIHVIEEKFPKRIDREIAMGAQKWVSVN 87 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + + + DS + +I K AL G E GL + + A Sbjct: 88 RHASAKECISHVREMGYQIVATSPHDDSLHLGDFDI-TKKSALFFGTERYGLSQEIIDEA 146 Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273 + M G ++LN+S +AA+ L Sbjct: 147 DCTLKIPMYGFTESLNISVSAAIIL 171 >gi|289434200|ref|YP_003464072.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170444|emb|CBH26984.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 169 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + ++ +L ++ +++ Sbjct: 1 MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLTY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQETAT- 249 ++ + +K H F I K I G E GL + + Sbjct: 61 YDSMDEFFEKNHGGEFYYITKFGRHLYSDIDYSDTAKDYFFIFGKETTGLPDELLQANEE 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M I++LN+SN AAV Y Sbjct: 121 HCLRIPMTDHIRSLNLSNTAAVLAYEALRQQN 152 >gi|260462582|ref|ZP_05810789.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum WSM2075] gi|259031778|gb|EEW33047.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum WSM2075] Length = 152 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 50/150 (33%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N +L + L + N G ILR A I P L ++ LE Sbjct: 2 NCRLRIALYQPDIAGNTGTILRFAACLGLGVDIIEPAGFPLSDKALRRAGMDYLEMAALT 61 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R + + + LS+ + P + L+ G E G+ + A + Sbjct: 62 RHVDWDAFEDWRKVHAKRLVLLSTKATAPYTEFAFARGDILLFGRESAGVPDPIHQAADA 121 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G +++NV+ + A+ Sbjct: 122 RLTIPMQGGARSINVALSVAMVAGEAVRQL 151 >gi|226365700|ref|YP_002783483.1| RNA methyltransferase [Rhodococcus opacus B4] gi|226244190|dbj|BAH54538.1| putative RNA methyltransferase [Rhodococcus opacus B4] Length = 155 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++ P N G +R C+ + + + +G H Sbjct: 1 MFRVMFHEPRIPPNTGNAIRMVAGTGCELHL--VGPLGFDLSEPKLKRAGLDYHDLASVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 + + ++ + L+ G E GL + T Sbjct: 59 VHENLEAAWAAVGPARVFAFTAHATVSYADIAYRPGDVLLFGPEPTGLSAEVLADPHVTE 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNAAA+ Y Sbjct: 119 RVRIPMLPGRRSLNLSNAAALVTYEAWRQ 147 >gi|293610921|ref|ZP_06693220.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|299768963|ref|YP_003730989.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. DR1] gi|292826573|gb|EFF84939.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|298699051|gb|ADI89616.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. DR1] Length = 157 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 3/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I+R + + L ++ E Sbjct: 1 MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60 Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--T 249 N+ L + + G + + ++ N +AL++G E +GL + Sbjct: 61 DNIELCLADLKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRLMFPQE 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV +Y Sbjct: 121 QWIRLPMAENSRSLNLSNATAVIVYEAWRQ 150 >gi|238750818|ref|ZP_04612316.1| Methyltransferase [Yersinia rohdei ATCC 43380] gi|238710962|gb|EEQ03182.1| Methyltransferase [Yersinia rohdei ATCC 43380] Length = 172 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L+ G E +GL P + A + M +++N+SNA +V +Y Sbjct: 106 YQINDYLLFGPETRGLPPNVLDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 163 >gi|254427839|ref|ZP_05041546.1| RNA methyltransferase, TrmH family, group 2 [Alcanivorax sp. DG881] gi|196194008|gb|EDX88967.1| RNA methyltransferase, TrmH family, group 2 [Alcanivorax sp. DG881] Length = 156 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYIT 276 P + D L+ G E +GL ++ T L M ++LN+SNA AV LY Sbjct: 85 PHSEACFQDGDVLLFGPETRGLPDPILKSLPPTQRLRLPMVADSRSLNLSNAVAVTLYEA 144 Query: 277 QNHF 280 Sbjct: 145 WRQL 148 >gi|53718088|ref|YP_107074.1| SpoU rRNA methylase family protein [Burkholderia pseudomallei K96243] gi|167814039|ref|ZP_02445719.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 91] gi|167901142|ref|ZP_02488347.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei NCTC 13177] gi|254181943|ref|ZP_04888540.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 1655] gi|254196458|ref|ZP_04902882.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei S13] gi|52208502|emb|CAH34437.1| SpoU rRNA methylase family protein [Burkholderia pseudomallei K96243] gi|169653201|gb|EDS85894.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei S13] gi|184212481|gb|EDU09524.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 1655] Length = 156 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A + ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + ++ + GAE +GL P + Sbjct: 61 RDWDAFVAAEAPDPARMFAFTTRGSGRFHDRSFEPGDWFVFGAETRGLAPALVDRFAPEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149 >gi|116053273|ref|YP_793597.1| putative rRNA methylase [Pseudomonas aeruginosa UCBPP-PA14] gi|115588494|gb|ABJ14509.1| putative RNA methylase [Pseudomonas aeruginosa UCBPP-PA14] Length = 153 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G I+R C + + L ++ E+ R Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVRRY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 +L L+ + ++ + + A + G E +GL + Sbjct: 61 PDLQSCLEA--LGQSRLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEDVRNALPTDR 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN AV +Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVTVYEAWRQL 148 >gi|296137027|ref|YP_003644269.1| RNA methyltransferase, TrmH family, group 2 [Thiomonas intermedia K12] gi|295797149|gb|ADG31939.1| RNA methyltransferase, TrmH family, group 2 [Thiomonas intermedia K12] Length = 156 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R C + + L ++ E+ Sbjct: 1 MFHIVLVEPEIPPNTGNVIRLCANTGCTLHLVEPLGFSLDDKQLRRAGLDYHEYATLQTH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250 ++ +Q + + ++ + + + GAE +GL +E Sbjct: 61 ASWDALMQTLQPRPERLFAFTTRGSRLIGSVRFEPGDYFVFGAETRGLSDAVREQFAPAQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN+ AVA++ Sbjct: 121 RLRLPMREGQRSLNLSNSVAVAVFEAWRQ 149 >gi|169632604|ref|YP_001706340.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF] gi|184159297|ref|YP_001847636.1| rRNA methylase [Acinetobacter baumannii ACICU] gi|260557293|ref|ZP_05829509.1| rRNA methylase [Acinetobacter baumannii ATCC 19606] gi|332872557|ref|ZP_08440526.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter baumannii 6014059] gi|169151396|emb|CAP00121.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii] gi|183210891|gb|ACC58289.1| predicted rRNA methylase (SpoU class) [Acinetobacter baumannii ACICU] gi|193078167|gb|ABO13111.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] gi|260409399|gb|EEX02701.1| rRNA methylase [Acinetobacter baumannii ATCC 19606] gi|322509208|gb|ADX04662.1| rRNA methylase [Acinetobacter baumannii 1656-2] gi|323519237|gb|ADX93618.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii TCDC-AB0715] gi|332739243|gb|EGJ70101.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter baumannii 6014059] Length = 157 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 3/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I+R + + L ++ E Sbjct: 1 MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60 Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--T 249 N+ L + + G + + ++ N +AL++G E +GL + Sbjct: 61 DNIELCLADLKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRLMFPQE 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV +Y Sbjct: 121 QWIRLPMAENSRSLNLSNATAVIVYEAWRQ 150 >gi|152985329|ref|YP_001351180.1| putative rRNA methylase [Pseudomonas aeruginosa PA7] gi|150960487|gb|ABR82512.1| probable rRNA methylase [Pseudomonas aeruginosa PA7] Length = 153 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G I+R C + + L ++ E+ R Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVRRY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 +L D L+ + ++ + + A + G E +GL + + A Sbjct: 61 PDLQDCLEA--LGQPRLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEEVRNALPAER 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN AV +Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVTVYEAWRQL 148 >gi|124268369|ref|YP_001022373.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] gi|124261144|gb|ABM96138.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] Length = 161 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R A C + E +L ++ EH R Sbjct: 1 MFHIVLVEPEIPPNTGNVIRLAANTGCTLHLVEPLGFSMEDKLLQRAGLDYHEHAAVRRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 ++ L + ++ +PL + L+ G E +GL P ++ A Sbjct: 61 ASWEALLVAEQPDPQRLFAFTTRGSRPLTEVPWQAGDWLVFGCETRGLDPTLRDRFPAAQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AVA++ Sbjct: 121 RVRLPMRAGQRSLNLSNAVAVAVFEAWRQ 149 >gi|315607016|ref|ZP_07882022.1| SpoU family RNA methylase [Prevotella buccae ATCC 33574] gi|315251397|gb|EFU31380.1| SpoU family RNA methylase [Prevotella buccae ATCC 33574] Length = 178 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + A++ G E KG+ + + G +LNVS A + ++ Sbjct: 121 QRYAVVFGNEVKGVSQSVVDLCDGCLEIPQFGTKHSLNVSVTAGIVIWEFLK 172 >gi|288925851|ref|ZP_06419781.1| RNA methylase, SpoU family [Prevotella buccae D17] gi|288337275|gb|EFC75631.1| RNA methylase, SpoU family [Prevotella buccae D17] Length = 178 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + A++ G E KG+ + + G +LNVS A + ++ Sbjct: 121 QRYAVVFGNEVKGVSQSVVDLCDGCLEIPQFGTKHSLNVSVTAGIVIWEFLK 172 >gi|29348574|ref|NP_812077.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|298386955|ref|ZP_06996509.1| RNA methylase, SpoU family [Bacteroides sp. 1_1_14] gi|29340479|gb|AAO78271.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|298260105|gb|EFI02975.1| RNA methylase, SpoU family [Bacteroides sp. 1_1_14] Length = 175 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 65/159 (40%), Gaps = 3/159 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++VLD + HNIG++ R++ AF + I + + K+A GA Sbjct: 16 EFKQAEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLR 241 + + ++N DA+ + G+ + + K K A+++G E KG++ Sbjct: 76 FTVDWKYVNNAVDAVDNLRKEGYIVYSIEQAEGSIMLDRLELDKTKKYAIVMGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + + G +LNVS + ++ Sbjct: 136 QEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFKKL 174 >gi|319934859|ref|ZP_08009304.1| RNA methyltransferase [Coprobacillus sp. 29_1] gi|319810236|gb|EFW06598.1| RNA methyltransferase [Coprobacillus sp. 29_1] Length = 168 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 2/150 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G I+R+ VA I + + ++ ++ + Sbjct: 1 MNHIVLVHPAIPQNTGNIMRTCVATHSKLHIIKPMGFSLDDKHMKRAGLDYIKDLEMEIY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSM 251 N + + + S + ++ G E G+ + Sbjct: 61 ENWEEFVTQNPGDYHFFTRYSKLCYTDQNYVS-DQDQYILFGHEHDGIPHDILKDHLDEC 119 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G ++LN+SN A+ +Y Sbjct: 120 VRIPMDGNARSLNLSNCVAIGIYEVLRQQN 149 >gi|225620368|ref|YP_002721625.1| RNA methyltransferase [Brachyspira hyodysenteriae WA1] gi|225215187|gb|ACN83921.1| RNA methyltransferase [Brachyspira hyodysenteriae WA1] Length = 164 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 1/156 (0%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 N +++ L P N G I R V + I +K S + ++ EH Sbjct: 5 KINDNFNIIIALYRPEIPANTGNIGRLCVGLNIPLHIVSKPSFIISSKEVKRAGLDYWEH 64 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + ++ N L+ +S + + ++ K ++ ++ L+ G E GLR E Sbjct: 65 LQLVKHENENTFLEYCNSNNKRIVPITKFGKHRYDEFQYSNNDILLFGRESTGLRESLWE 124 Query: 247 T-ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + ++ M I+++NVSN AA+ Y H Sbjct: 125 NDLENSVYIPMSDNIRSINVSNTAAIVAYEAYRHII 160 >gi|209550362|ref|YP_002282279.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536118|gb|ACI56053.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 153 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 48/149 (32%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + L + L + P N G ILR A + L +S + Sbjct: 1 MTDLRLALYQPDIPGNTGTILRLAACLGFAVDLIEPAGFDVSDRNLKRSGMDYIAAAALT 60 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R N + G + I S+ + L+ G E G+ E A + Sbjct: 61 RHVNWDRFEAWRATTGRRLILASTKAADRYTDLAFRSDDILLFGRESAGVPDHVHERADA 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++NV+ +AA+ + Sbjct: 121 RILIPMVDGQRSINVAVSAAMIVGEAMRQ 149 >gi|149376046|ref|ZP_01893812.1| predicted rRNA methylase [Marinobacter algicola DG893] gi|149359683|gb|EDM48141.1| predicted rRNA methylase [Marinobacter algicola DG893] Length = 154 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R C + E + ++ E+ Sbjct: 1 MLNVVLFEPEIPPNTGNIIRLCANTGCQLHLIEPLGFTLEDKQMRRAGLDYSEYATVTVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 S+ L+ + + + L+ G E +GL +E Sbjct: 61 SDYQAFLESEQPSRLFGLTTKG--SRGYHDVEYQNGDYLMFGPETRGLPQDIREAMPEHH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SN A+ +Y F Sbjct: 119 RLRVPMRPESRSLNLSNTVALVVYEAWRQF 148 >gi|170719600|ref|YP_001747288.1| RNA methyltransferase [Pseudomonas putida W619] gi|169757603|gb|ACA70919.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida W619] Length = 153 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G I+R C + + L ++ E+ R Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANSGCALHLIEPISFELDDKRLRRAGLDYHEYATLKRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 +L L+ + ++ P + A + G E +GL + ++ A Sbjct: 61 ESLARCLEN--LGNPRLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEVLDSLPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV +Y Sbjct: 119 RLRLPMMPGCRSLNLSNTVAVTVYEAWRQ 147 >gi|317485782|ref|ZP_07944647.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6] gi|316922956|gb|EFV44177.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6] Length = 151 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 1/143 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VL P N G + R A + E L ++ H+ Sbjct: 1 MHVVLFQPEIPPNTGNVARLCAAMQVSLHLIEPLGFKLEDRYLKRAGLDYWPHVDMAVWP 60 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 +L ++ + + + L + + +L+ G E GL P+ + Sbjct: 61 DLDAYIRNSGAGRRLVLTS-ARRGAALHRFEFTENDSLVFGRETSGLPPEVIGLSPHHVR 119 Query: 254 LHMPGIIKALNVSNAAAVALYIT 276 + + G ++++N+S AA + L+ Sbjct: 120 IPIKGEVRSINLSTAAGIVLFQA 142 >gi|212550666|ref|YP_002308983.1| rRNA methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548904|dbj|BAG83572.1| putative rRNA methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 180 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 65/157 (41%), Gaps = 2/157 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 V+ + L++VLD++ +N+G++ R+ AF + + + + + K+A GA Sbjct: 16 DFKEVKKNPLVVVLDNIRSLNNVGSVFRTCDAFRVETVYLCGITAIPPNVEIHKTALGAE 75 Query: 185 EHIPYIRISN--LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + + + + + + +S E + K K A+ILG E G+ Sbjct: 76 DSVNWKYSPITLRIVEELHQKGYQIIAVEQAEESIMLDEFQSKYSKQAIILGNEVHGIDQ 135 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + G +LNVS A + ++ + Sbjct: 136 EVMNQCDACIEIPQFGTKHSLNVSITAGIVIWEITKN 172 >gi|153807072|ref|ZP_01959740.1| hypothetical protein BACCAC_01349 [Bacteroides caccae ATCC 43185] gi|149130192|gb|EDM21402.1| hypothetical protein BACCAC_01349 [Bacteroides caccae ATCC 43185] Length = 175 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 3/159 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++VLD + HNIG++ R++ AF + I + + K+A GA Sbjct: 16 EFKQAEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + + N DA+ + G+ + + E K+ K A+++G E KG++ Sbjct: 76 FTVDWKYVDNAVDAVDNLRKAGYMVYSVEQAEGSIMLDELELDKSKKYAIVMGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + G +LNVS + ++ Sbjct: 136 QEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFKKL 174 >gi|160878312|ref|YP_001557280.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans ISDg] gi|160426978|gb|ABX40541.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans ISDg] Length = 166 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 1/98 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + ++ ++ + ++ G E G+ + Sbjct: 50 YWKDLDVTVYENYDDFLRRNPNAKIYMATTKARHVYTEVSYEPDCFIMFGKESAGIPEEI 109 Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 E + + M G I++LN+SN+ A+ LY Sbjct: 110 LLENKETSIRIPMIGDIRSLNLSNSVAIVLYEALRQQN 147 >gi|118580121|ref|YP_901371.1| tRNA/rRNA methyltransferase SpoU [Pelobacter propionicus DSM 2379] gi|118502831|gb|ABK99313.1| tRNA/rRNA methyltransferase (SpoU) [Pelobacter propionicus DSM 2379] Length = 157 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 2/88 (2%) Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252 + LS+ + + ++ G E KGL + E + + Sbjct: 65 WQRLEQVWQEFPRGRFFYLSTKAGRSYLAADFRPGDFIVFGKETKGLPAEILEWNSETAI 124 Query: 253 HLHMP-GIIKALNVSNAAAVALYITQNH 279 + MP +++LN+S +A + LY Sbjct: 125 TIPMPANAVRSLNLSTSAGIVLYEALRQ 152 >gi|260220117|emb|CBA27334.1| Uncharacterized tRNA/rRNA methyltransferase yibK [Curvibacter putative symbiont of Hydra magnipapillata] Length = 154 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R A C + + + ++ E+ R Sbjct: 1 MFHIVLVEPEIPPNTGNVIRLAANTGCRLHLVEPLGFSMDDKHMRRAGLDYHEYAELKRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250 ++ L + L++ + + L+ G+E KG+ + + + Sbjct: 61 ASWQHFLDAERPAPDRLFTLTTRGTRSPFEVAFQPGDWLVFGSETKGISDFVRMSFSPER 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 121 SLRLPMRPDQRSLNLSNAVAVTVFEAWRQ 149 >gi|323343642|ref|ZP_08083869.1| SpoU family RNA methylase [Prevotella oralis ATCC 33269] gi|323095461|gb|EFZ38035.1| SpoU family RNA methylase [Prevotella oralis ATCC 33269] Length = 176 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 3/159 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT---KRYSPSESAVLAKSAS 181 L++VLD V HN+G++ RS AF + + +E A Sbjct: 16 EFKEAPKLPLVVVLDDVRSLHNVGSVFRSCDAFRVEAVYLCGITATPPSAEIHKTALGGE 75 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 ++E + + L+ + + K + + K A++ G E KG++ Sbjct: 76 NSVEWKYFSQTEKAIRQLRLEGYFCYAVEQAEGSVKLQTLRLNRAKKYAVVFGNEVKGVK 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + S + G +LNVS A V ++ Sbjct: 136 QTVIDCCDSCLEIPQLGTKHSLNVSVTAGVVVWEFAKQL 174 >gi|294815551|ref|ZP_06774194.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064] gi|326443902|ref|ZP_08218636.1| putative tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|294328150|gb|EFG09793.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064] Length = 179 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + +G E G+ P+ ++A + G + +LNV+ A AVA Y + Sbjct: 112 HEADLSGATCIAVGNEDHGISPQALGMCDAVAFIPQLGRVGSLNVATALAVACYEVRRQ 170 >gi|254391080|ref|ZP_05006288.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|197704775|gb|EDY50587.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 182 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + +G E G+ P+ ++A + G + +LNV+ A AVA Y + Sbjct: 115 HEADLSGATCIAVGNEDHGISPQALGMCDAVAFIPQLGRVGSLNVATALAVACYEVRRQ 173 >gi|197305217|pdb|3E5Y|A Chain A, Crystal Structure Of Trmh Family Rna Methyltransferase From Burkholderia Pseudomallei gi|197305218|pdb|3E5Y|B Chain B, Crystal Structure Of Trmh Family Rna Methyltransferase From Burkholderia Pseudomallei Length = 160 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A + ++ E+ Sbjct: 5 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 64 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + ++ + GAE +GL P + Sbjct: 65 RDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQ 124 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 125 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 153 >gi|53724519|ref|YP_104677.1| RNA methyltransferase [Burkholderia mallei ATCC 23344] gi|67640730|ref|ZP_00439526.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei GB8 horse 4] gi|76811046|ref|YP_332082.1| RNA methyltransferase [Burkholderia pseudomallei 1710b] gi|121598583|ref|YP_991525.1| RNA methyltransferase [Burkholderia mallei SAVP1] gi|124386186|ref|YP_001027401.1| RNA methyltransferase [Burkholderia mallei NCTC 10229] gi|126450821|ref|YP_001082366.1| RNA methyltransferase [Burkholderia mallei NCTC 10247] gi|167001964|ref|ZP_02267754.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei PRL-20] gi|167717915|ref|ZP_02401151.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei DM98] gi|167736934|ref|ZP_02409708.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 14] gi|167822559|ref|ZP_02454030.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 9] gi|167844142|ref|ZP_02469650.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei B7210] gi|167892647|ref|ZP_02480049.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 7894] gi|167909362|ref|ZP_02496453.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 112] gi|167917391|ref|ZP_02504482.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei BCC215] gi|217420146|ref|ZP_03451652.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 576] gi|226193732|ref|ZP_03789335.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei Pakistan 9] gi|254174655|ref|ZP_04881316.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei ATCC 10399] gi|254187876|ref|ZP_04894388.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei Pasteur 52237] gi|254201771|ref|ZP_04908135.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei FMH] gi|254207104|ref|ZP_04913455.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei JHU] gi|254259607|ref|ZP_04950661.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 1710a] gi|254296007|ref|ZP_04963464.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 406e] gi|254357588|ref|ZP_04973862.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei 2002721280] gi|313471793|sp|A3NR15|TRML_BURP0 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL gi|52427942|gb|AAU48535.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei ATCC 23344] gi|76580499|gb|ABA49974.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 1710b] gi|121227393|gb|ABM49911.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei SAVP1] gi|124294206|gb|ABN03475.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei NCTC 10229] gi|126243691|gb|ABO06784.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei NCTC 10247] gi|147747665|gb|EDK54741.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei FMH] gi|147752646|gb|EDK59712.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei JHU] gi|148026652|gb|EDK84737.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei 2002721280] gi|157805768|gb|EDO82938.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 406e] gi|157935556|gb|EDO91226.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei Pasteur 52237] gi|160695700|gb|EDP85670.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei ATCC 10399] gi|217397450|gb|EEC37466.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 576] gi|225934310|gb|EEH30294.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei Pakistan 9] gi|238521501|gb|EEP84952.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei GB8 horse 4] gi|243062290|gb|EES44476.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei PRL-20] gi|254218296|gb|EET07680.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 1710a] Length = 156 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P + A + ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + ++ + GAE +GL P + Sbjct: 61 RDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149 >gi|303283456|ref|XP_003061019.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457370|gb|EEH54669.1| predicted protein [Micromonas pusilla CCMP1545] Length = 219 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 48/101 (47%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 GA++ + + DA++ G++ + + PLE A+ILG E +G+ Sbjct: 96 GAVKWTHLQQWRSTADAVRDAKKRGYRVLTTVFEGGHPLEHYDWTVPTAVILGNEREGVS 155 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + ++ A ++ M G ++LNVS A+++ ++ + Sbjct: 156 EEAKKLADGGVYVSMNGFTESLNVSVASSLVMHHAVQDRTR 196 >gi|114567616|ref|YP_754770.1| rRNA methylase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338551|gb|ABI69399.1| rRNA methylase (SpoU class) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 152 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMPGIIKALNVSNAAAVALYITQN 278 Q L+ G E GL ++ + + M I ++LN+SN+ A+ LY Sbjct: 85 YHQVSYPQDSWLVFGRESSGLPISILKSFPDTQIRIPMQDIGRSLNLSNSVAIILYEALR 144 Query: 279 H 279 Sbjct: 145 Q 145 >gi|160884851|ref|ZP_02065854.1| hypothetical protein BACOVA_02841 [Bacteroides ovatus ATCC 8483] gi|237716991|ref|ZP_04547472.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1] gi|237722042|ref|ZP_04552523.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4] gi|262405759|ref|ZP_06082309.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_22] gi|293369284|ref|ZP_06615871.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|294646957|ref|ZP_06724575.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294806791|ref|ZP_06765617.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] gi|298483224|ref|ZP_07001403.1| RNA methylase, SpoU family [Bacteroides sp. D22] gi|156109886|gb|EDO11631.1| hypothetical protein BACOVA_02841 [Bacteroides ovatus ATCC 8483] gi|229442974|gb|EEO48765.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1] gi|229448911|gb|EEO54702.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4] gi|262356634|gb|EEZ05724.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_22] gi|292635614|gb|EFF54119.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|292637679|gb|EFF56079.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294445961|gb|EFG14602.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] gi|295085812|emb|CBK67335.1| rRNA methylases [Bacteroides xylanisolvens XB1A] gi|298270541|gb|EFI12123.1| RNA methylase, SpoU family [Bacteroides sp. D22] Length = 175 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 67/159 (42%), Gaps = 3/159 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 V L++VLD + HNIG++ R++ AF + I + + K+A GA Sbjct: 16 EFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + ++N DA+ + + G+ + + E K K A+++G E KG++ Sbjct: 76 FTVDWKYVNNAVDAVDNLKNEGYIVYSVEQAEGSIMLDELQLDKTKKYAIVMGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + G +LNVS + ++ Sbjct: 136 QEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFKKL 174 >gi|111023195|ref|YP_706167.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1] gi|110822725|gb|ABG98009.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1] Length = 151 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E GL + T + M ++LN+SNAAA+ Y Sbjct: 87 YQPGDVLLFGPEPTGLSEEVLADPHVTERLRIPMLPGRRSLNLSNAAALVTYEAWRQ 143 >gi|224537157|ref|ZP_03677696.1| hypothetical protein BACCELL_02034 [Bacteroides cellulosilyticus DSM 14838] gi|224521212|gb|EEF90317.1| hypothetical protein BACCELL_02034 [Bacteroides cellulosilyticus DSM 14838] Length = 175 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 67/160 (41%), Gaps = 3/160 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++VLD++ HNIG++ R++ AF + I + + K+A GA Sbjct: 16 EFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRVECIYLCGITATPPHPEMHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + + N +A+ + G+ + + E + K A+++G E KG++ Sbjct: 76 FTVDWKYVDNCVEAVDNLKKEGYTVYSVEQAEGSIMLDELSLDRTKKYAVVMGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + + + G +LNVS A + ++ Sbjct: 136 QEVIDHSDGCIEIPQYGTKHSLNVSVTAGIVIWDLFKKLK 175 >gi|47228934|emb|CAG09449.1| unnamed protein product [Tetraodon nigroviridis] Length = 1600 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +K LILG E +G+ + + GII++LNV +AA+ ++ Sbjct: 1537 QDYQFPEKTLLILGNEREGIPANLLQMLDVCVEIPQQGIIRSLNVHVSAALLIWEYTRQ 1595 >gi|169794928|ref|YP_001712721.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|213157667|ref|YP_002320465.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii AB0057] gi|215482474|ref|YP_002324660.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB307-0294] gi|301344898|ref|ZP_07225639.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AB056] gi|301511069|ref|ZP_07236306.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AB058] gi|301596286|ref|ZP_07241294.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AB059] gi|332854216|ref|ZP_08435236.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter baumannii 6013150] gi|332866342|ref|ZP_08436947.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter baumannii 6013113] gi|169147855|emb|CAM85718.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|213056827|gb|ACJ41729.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii AB0057] gi|213987372|gb|ACJ57671.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB307-0294] gi|332728141|gb|EGJ59529.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter baumannii 6013150] gi|332734690|gb|EGJ65794.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter baumannii 6013113] Length = 157 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 3/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I+R + + L ++ E Sbjct: 1 MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60 Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--T 249 N+ + + G + I ++ N +AL++G E +GL + Sbjct: 61 DNIELCRADLKAKGVEHIFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRLMFPQE 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV +Y Sbjct: 121 QWIRLPMAENSRSLNLSNATAVIVYEAWRQ 150 >gi|291520515|emb|CBK75736.1| Predicted rRNA methylase (SpoU class) [Butyrivibrio fibrisolvens 16/4] Length = 165 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 3/148 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L ++L P N G I R+ A + + ++ + + R Sbjct: 1 MLNIILHEPEIPANTGNIGRTCCATGTRLHLIEPLGFVLTDKTVKRAGMDYWDKLEVFRY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 + D K + ++ G E G+ + + + Sbjct: 61 DDWDDFKAKNPDAKIYMATTKAKRTHTE--VNYEPDCYIMFGKESAGIPEEILVDNEENC 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN+ A+ LY Sbjct: 119 VRIPMGHDIRSLNLSNSVAIILYEALRQ 146 >gi|292486593|ref|YP_003529461.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430] gi|292897830|ref|YP_003537199.1| RNA-methyltransferase [Erwinia amylovora ATCC 49946] gi|291197678|emb|CBJ44773.1| putative RNA-methyltransferase [Erwinia amylovora ATCC 49946] gi|291552008|emb|CBA19045.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430] gi|312170652|emb|CBX78915.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 156 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 4/149 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VL P N G I+R + + L ++ H Sbjct: 1 MHIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFAWDDKRLRRAGLDY--HEFAAIRH 58 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251 + + + L++ L+ G E +GL + A Sbjct: 59 HASYEAFTASEAPQRLFALTTKGTPAHSAVSYQAGDYLLFGPETRGLPARVLNALPAQQK 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 IRIPMMPDSRSMNLSNAVSVVVYEAWRQL 147 >gi|323451205|gb|EGB07083.1| hypothetical protein AURANDRAFT_14487 [Aureococcus anophagefferens] Length = 164 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 2/141 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L + + ++P N A LR+ AF + K E+ + A + + Sbjct: 23 HLRVAFERPSNPANAWACLRTIDAFGVQDVDVVKDTL--EARMHAAMGAQKWLTLREHDA 80 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + L S+ + + + AL+ G E G+ + A Sbjct: 81 PGDLVDALHAAGYKVAATDLGPGSRPIGDVDWAAEPYALVFGNEETGISEDLRARADVRV 140 Query: 253 HLHMPGIIKALNVSNAAAVAL 273 HL M G+ ++LN+S + L Sbjct: 141 HLPMRGLAESLNLSVSVGACL 161 >gi|291402154|ref|XP_002717373.1| PREDICTED: TAR RNA binding protein 1 [Oryctolagus cuniculus] Length = 1629 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +K L+LG E +G+ + + G++++LNV + A+ ++ Sbjct: 1554 YCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGVVRSLNVHVSGALLIWEYTRQR 1611 >gi|150025852|ref|YP_001296678.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149772393|emb|CAL43873.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 217 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 1/145 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R + + ++ + HN A++RS F + + + Sbjct: 28 NRTNHFTIAVEDIFQMHNTSAVMRSCEVFGIQELNVIEERYGKSIDKEIAMGAQ-KWVDI 86 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 S + ++ LE + AL G E GL + + A Sbjct: 87 NTFDSVTNCIESLKNKGYQIIATTPHENDCLLEDFDISKPSALFFGTERDGLSEEILKQA 146 Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273 + M G ++LN+S +AA+ + Sbjct: 147 DGFLKIPMVGFTESLNISVSAAIII 171 >gi|113475890|ref|YP_721951.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101] gi|110166938|gb|ABG51478.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum IMS101] Length = 234 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 63/159 (39%), Gaps = 4/159 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R + ++L+ + PHN A+LRS +F + + + S + Sbjct: 30 QQRTRDITVILEDIYQPHNASAVLRSCDSFGVQDVHIVENKNIFTITQSVTIGSDRWLTL 89 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRPK 243 ++ + + + + +++ + I+ N K+AL+ G+E GL Sbjct: 90 YRYNEQSINNTEECLKRLKNEGYVIAATTPYKEHITIEELSVNTKVALMFGSEINGLSEY 149 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + A + M G ++ N+S +AA+ LY + K Sbjct: 150 AKNNADVSVKIPMVGFSESFNISVSAALCLYNLMSRLKK 188 >gi|88808705|ref|ZP_01124215.1| putative tRNA/rRNA methyltransferase (SpoU family) protein [Synechococcus sp. WH 7805] gi|88787693|gb|EAR18850.1| putative tRNA/rRNA methyltransferase (SpoU family) protein [Synechococcus sp. WH 7805] Length = 165 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 9/157 (5%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++ S L + L P N G I R+ AF + + L ++ H+ Sbjct: 3 HLKPSPLSVALFEPRIPPNTGNIARTCAAFDLPLSLIEPLGFSIDDRQLKRAGLDYWPHV 62 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 ++ + D L+ L+ G E GL ++ Sbjct: 63 NLSVHTDFKAFKTSLAKPSRVIGCSRRD-GVALQDFSFEQGDVLLFGREDTGLPEPVRDQ 121 Query: 248 ATSMAHLHMP--------GIIKALNVSNAAAVALYIT 276 + + MP G +++LN+S A A+A + Sbjct: 122 CDDILTIPMPCSAGVDGQGGVRSLNLSVACAIACFQA 158 >gi|330844482|ref|XP_003294153.1| hypothetical protein DICPUDRAFT_9482 [Dictyostelium purpureum] gi|325075433|gb|EGC29321.1| hypothetical protein DICPUDRAFT_9482 [Dictyostelium purpureum] Length = 224 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 84/219 (38%), Gaps = 21/219 (9%) Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---------VR 130 + + P+ + ++ K HQG+ L+ +PL +D + Sbjct: 7 KEIAEKANELKIPIIAIKNNIMESFS-KNKPHQGVILDCSPLTVLNIDFLKPFKANKNTK 65 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 L +VLD + DP N+G I+RS F+ DGI+ + + S + +K +SGA+E+ Sbjct: 66 RYPLWIVLDELWDPQNVGTIIRSCSFFNVDGIVISDKCSNPITPTASKCSSGAVENYLVH 125 Query: 191 RISNLT----------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 + ++ + + SS + + + LILG EG G+ Sbjct: 126 KSESINGFLLSSKKNGWNIVATSVDDNSSEDSSSPANYNITDVKLDQPTILILGNEGFGV 185 Query: 241 RPKTQETATSMAHLH-MPGIIKALNVSNAAAVALYITQN 278 + I +LNVS + + ++ N Sbjct: 186 HKSIINQCDKTIRISGGNKKIDSLNVSVSTGILIHSLLN 224 >gi|284048565|ref|YP_003398904.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM 20731] gi|283952786|gb|ADB47589.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM 20731] Length = 156 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 43/148 (29%), Gaps = 3/148 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I R A + + L ++ + Sbjct: 1 MMHIVLVEPEIPGNTGNIARLCAATGASLHLVRPLGFSVDDKYLKRAGLDYWHLVDIHYY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 ++ + L + + LI G E GL + Sbjct: 61 DSVEEVLAAYPDSPRFLLTTHAHKSYSR--VHYGPDSLLIFGKESAGLPEAFRQAHEEEC 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++N+ ++ LY Sbjct: 119 VRIPMVSEARSLNLANSVSIVLYEALRQ 146 >gi|239502303|ref|ZP_04661613.1| rRNA methylase (SpoU class) [Acinetobacter baumannii AB900] Length = 157 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 3/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I+R + + L ++ E Sbjct: 1 MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60 Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--T 249 N+ L + + G + I ++ N +AL++G E +GL + Sbjct: 61 DNIELCLADLKAKGVEHIFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRLMFPQE 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV +Y Sbjct: 121 QWIRLPMAENSRSLNLSNATAVIVYEAWRQ 150 >gi|170751018|ref|YP_001757278.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans JCM 2831] gi|170657540|gb|ACB26595.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans JCM 2831] Length = 176 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 50/152 (32%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + L + L + P N G +LR A I L +S L+H+ Sbjct: 23 HKAGAMLRLALYQPDIPQNTGTMLRMAACLGLAVEIVEPAGFDVSDRHLRRSGLDYLDHV 82 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 R + G + + ++ P L++G E G+ Sbjct: 83 AITRHRSFAAFAAWRAEAGIRLVLATTAGAVPYTDFAFRPDDCLMVGRESAGVPEAVHAA 142 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + + + +++LNV+ AAA+ Sbjct: 143 ADARIVVPIRPGLRSLNVAVAAAMIAGEALRQ 174 >gi|224540931|ref|ZP_03681470.1| hypothetical protein CATMIT_00082 [Catenibacterium mitsuokai DSM 15897] gi|224526164|gb|EEF95269.1| hypothetical protein CATMIT_00082 [Catenibacterium mitsuokai DSM 15897] Length = 170 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 2/148 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G I+R+ A I + ++ +H+ + Sbjct: 1 MNHVVLVHPAIPQNTGNIMRTCAATHTPLHIIKPTGFKLNDPRMKRAVMDYFDHLTFKVY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSM 251 N + ++ S + + + + L G E G+ + Sbjct: 61 ENFEEFEKENPGIYHFFTRYSKKVYSEDDFKQEGEH-YLFFGHEHDGIPHDILKKYIDDC 119 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G ++LN+SN A+ +Y Sbjct: 120 VRIPMYGDSRSLNLSNTVAIGVYEALRQ 147 >gi|163755356|ref|ZP_02162476.1| tRNA/rRNA methyltransferase (SpoU) [Kordia algicida OT-1] gi|161324776|gb|EDP96105.1| tRNA/rRNA methyltransferase (SpoU) [Kordia algicida OT-1] Length = 218 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 1/147 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + ++ V HN A+LRS F + + + + + Sbjct: 28 RTRHFTVAVEDVYQMHNTSAVLRSCDVFGIQDVHVIEARLGKKMDREIAMGAQ-KWVDIH 86 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + L K A G E +GL + A Sbjct: 87 RYNDTQQCIDTLKKQGYRIIATTPHEDSQYLHDFDITQKAAFFFGKEKEGLSEEVLSQAD 146 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276 + M G ++LN+S +AA+ + Sbjct: 147 EFLKIPMVGFTESLNISVSAAITIQEV 173 >gi|122936696|dbj|BAF45162.1| putative RNA methyltransferase [uncultured bacterium] Length = 220 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + K+A+ G E +G+ E + + M G+I++LN+ + + LY + Sbjct: 147 HYKLAVWFGNEARGISDLAVEHSEMCVSIPMFGMIESLNLGTTSGIVLYEVTKQRRE 203 >gi|78212857|ref|YP_381636.1| SpoU family tRNA/rRNA methyltransferase [Synechococcus sp. CC9605] gi|78197316|gb|ABB35081.1| putative tRNA/rRNA methyltransferase (SpoU family) [Synechococcus sp. CC9605] Length = 163 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 8/66 (12%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--------GIIKALNVSNAAAVALY 274 L+ G E GL ++ S+ + MP G +++LN+S A A+ Y Sbjct: 95 FTFQRGDVLLFGREDTGLPESVRDACDSILTIPMPGAADDAGQGGVRSLNLSVACALVTY 154 Query: 275 ITQNHF 280 + Sbjct: 155 VAGQQL 160 >gi|325293791|ref|YP_004279655.1| RNA methylase [Agrobacterium sp. H13-3] gi|325061644|gb|ADY65335.1| RNA methylase [Agrobacterium sp. H13-3] Length = 290 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 104/262 (39%), Gaps = 12/262 (4%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYG---VHTVSAALNNPS-RKIFQLLATKNALAR 80 + ++ T + G + ++AA +L KN L+ Sbjct: 26 PADPRIAAFRDIRER-DLTGRQGRFIAEGTVVLRMLAAAHKAGGAFAAESILILKNRLSG 84 Query: 81 LDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLL 135 + P PV +D IVG +H+G+ + TLD + S L+ Sbjct: 85 VADILADFPPDVPVYVAEAPVLDGIVGFH-LHRGILALGRRVRDITLDGLTDALPASSLV 143 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +V +++ N+GA+ R+A AF D + + + + G++ +PY R Sbjct: 144 LVGCGISNHDNLGAMFRNAAAFYADAVFLDETSCDPLYRKALRVSVGSVLSVPYHRGGGA 203 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 L+++ GF LS + + + ++D++AL++G EG+GL A + Sbjct: 204 VQMLERLSQAGFAIWSLSPNGETEIRDIPRSDRMALVIGTEGEGLPQSVLSRF-HTARIA 262 Query: 256 MPGIIKALNVSNAAAVALYITQ 277 + +LN A+ +ALY Sbjct: 263 QSPQLDSLNAGTASGLALYQMA 284 >gi|313899457|ref|ZP_07832967.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. HGF2] gi|312955745|gb|EFR37403.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. HGF2] Length = 169 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 2/150 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G ++R+ +A + + L ++ ++ + Y Sbjct: 1 MLHLVLYEPEIPQNTGNMMRTCMATGTRLHLIQPLGFSLDEQHLKRAGMDYVKELEYTIY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQ-ETATS 250 + + Q+ S + + K + ILG E G+ Sbjct: 61 KSWEEFTQQNPSDNYYYMTRYGKKAPSQFDFTKCEGDIYFILGKESTGIPKTILSRQLEH 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN AA+ LY Sbjct: 121 CMRLPMVANARSLNLSNCAAIILYEALRQL 150 >gi|311067376|ref|YP_003972299.1| putative rRNA methylase [Bacillus atrophaeus 1942] gi|310867893|gb|ADP31368.1| putative rRNA methylase [Bacillus atrophaeus 1942] Length = 157 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 52/152 (34%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + + ++ +L ++ E + + Sbjct: 1 MALHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQET-AT 249 +L + + F I + ++ + G E GL E Sbjct: 61 HDSLEELFEAYQKGQFFLITKFGQKPHTSFDYTDIDEDYFFVFGRETSGLPKDLIEKNMD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 L M +++LN+SN AA+ +Y Sbjct: 121 RCLRLPMTEHVRSLNLSNTAAILVYEALRQQN 152 >gi|126663591|ref|ZP_01734588.1| spoU protein [Flavobacteria bacterium BAL38] gi|126624539|gb|EAZ95230.1| spoU protein [Flavobacteria bacterium BAL38] Length = 220 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 45/152 (29%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R + ++ V HN A++RS F + ++ + Sbjct: 30 NRTKHFTIAMEDVFQLHNTSAVMRSCEVFGIQELNVVEQKFGKSIDKEIAMGAE-KWVDI 88 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 S + L + AL G E GL + + A Sbjct: 89 NRFSSIQDCITNLKQKGYQIIATTPHNDSCLLHEFDITQPSALFFGTERDGLSEEVMQQA 148 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G ++LN+S +AA+ + N Sbjct: 149 DGFLKIPMVGYTESLNISVSAAIIIQDITNRL 180 >gi|15236590|ref|NP_193496.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] gi|332658520|gb|AEE83920.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] Length = 1850 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K L+LG E +G+ + + G++++LNV + A+AL+ Sbjct: 1791 YQFPKKTVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1847 >gi|297520579|ref|ZP_06938965.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli OP50] Length = 86 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D L+ G E +GL + A + M +++N+SNA +V +Y Sbjct: 20 YQDGDYLMFGPETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 77 >gi|288800355|ref|ZP_06405813.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 299 str. F0039] gi|288332568|gb|EFC71048.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 299 str. F0039] Length = 176 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 66/151 (43%), Gaps = 3/151 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L++VLD+V HN+G++ RS AF + + + SA + K+A GA + + + Sbjct: 24 PLVVVLDNVRSLHNVGSVFRSCDAFRIEAVYLCGITATPPSAEIHKTALGAEDSVSWKYY 83 Query: 193 SNL---TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + L++ + + + + + A++LG E KG++ + + Sbjct: 84 KSTLDAVEELKQQDYFVYSIEQVEGSQNMAKINLDHSKRYAVVLGNEVKGVQQEVVNASD 143 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 S + G +LNVS A + ++ Sbjct: 144 SCLEIPQLGTKHSLNVSVTAGIVVWEFAKQL 174 >gi|226887998|pdb|3GYQ|A Chain A, Structure Of The Thiostrepton-Resistance Methyltransferase S-Adenosyl-L-Methionine Complex gi|226887999|pdb|3GYQ|B Chain B, Structure Of The Thiostrepton-Resistance Methyltransferase S-Adenosyl-L-Methionine Complex Length = 272 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 91/259 (35%), Gaps = 4/259 (1%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 + +++ + S S + + V + ++ I + + D Sbjct: 13 PSDPAVQRIIDVTKPS--RSNIKTTLIEDVEPLMHSIAAGVEFIEVYGSDSSPFPSELLD 70 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 PV+ + ++++ E + + P + D ++VLD V Sbjct: 71 LCGRQNIPVRLIDSSIVNQLFKGERKAKTFGIARVPRPARFGDIASRRGDVVVLDGVKIV 130 Query: 145 HNIGAILRS-AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 NIGAI+R+ + I+ + L +++ G + +P + Sbjct: 131 GNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSLPVVLSGREEAIAFIRD 190 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 S + E D++AL+ G+E G +E +++ + M ++L Sbjct: 191 SGMQLMTLKADGDISVKELGDNPDRLALLFGSEKGGPSDLFEEASSASVSIPMMSQTESL 250 Query: 264 NVSNAAAVALYITQ-NHFA 281 NVS + +AL+ + A Sbjct: 251 NVSVSLGIALHERIDRNLA 269 >gi|220936435|ref|YP_002515334.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp. HL-EbGR7] gi|219997745|gb|ACL74347.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp. HL-EbGR7] Length = 157 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G E +GL + + + M ++LN+SNAAAV +Y Sbjct: 91 FRPGDTFLFGPETRGLPMEILDGLPEDRRLRIPMVPGSRSLNLSNAAAVMVYEAWRQ 147 >gi|209878796|ref|XP_002140839.1| RNA methyltransferase, TrmH family protein [Cryptosporidium muris RN66] gi|209556445|gb|EEA06490.1| RNA methyltransferase, TrmH family protein [Cryptosporidium muris RN66] Length = 199 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYITQ 277 A ILG EG GL + + + ++ M G +LNV+ A ++ + Sbjct: 97 YPHPFRRSTAFILGNEGTGLSQRQIDICDYLVYIPMYGSGTASLNVAIAGSILFHHFA 154 >gi|136456|sp|P18644|TSNR_STRCN RecName: Full=rRNA (adenosine-2'-O-)-methyltransferase; AltName: Full=23S rRNA [AM1067] 2'-O-methyltransferase; Short=23S rRNA methylase; AltName: Full=Thiostrepton-resistance methylase gi|46771|emb|CAA26234.1| unnamed protein product [Streptomyces cyaneus] gi|1403525|emb|CAA67009.1| Thiostrepton resistance protein [Cloning vector pIJ2581] gi|7380884|dbj|BAA93040.1| rRNA methylase [Shuttle vector pRES19] gi|17974141|emb|CAC93942.1| thiostrepton resistance gene [Cloning vector pIJ6021] gi|18252132|gb|AAL61980.1| thiostrepton resistance protein TsrR [Expression vector pANT849] gi|18252137|gb|AAL61984.1| thiostrepton resistance protein TsrR [Expression vector pANT1200] gi|42733306|dbj|BAD11208.1| thiostrepton resistance protein [Expression vector pTip-NH1] gi|42733313|dbj|BAD11214.1| thiostrepton resistance protein [Expression vector pTip-CH1] gi|42733320|dbj|BAD11220.1| thiostrepton resistance protein [Expression vector pTip-NH2] gi|42733327|dbj|BAD11226.1| thiostrepton resistance protein [Expression vector pTip-CH2] gi|42733334|dbj|BAD11232.1| thiostrepton resistance protein [Expression vector pTip-LNH1] gi|42733341|dbj|BAD11238.1| thiostrepton resistance protein [Expression vector pTip-LCH1] gi|42733348|dbj|BAD11244.1| thiostrepton resistance protein [Expression vector pTip-LNH2] gi|42733355|dbj|BAD11250.1| thiostrepton resistance protein [Expression vector pTip-LCH2] gi|42733362|dbj|BAD11256.1| thiostrepton resistance protein [Expression vector pTip-NH1.2] gi|42733369|dbj|BAD11262.1| thiostrepton resistance protein [Expression vector pTip-CH1.2] gi|42733376|dbj|BAD11268.1| thiostrepton resistance protein [Expression vector pTip-NH2.2] gi|42733383|dbj|BAD11274.1| thiostrepton resistance protein [Expression vector pTip-CH2.2] gi|42733390|dbj|BAD11280.1| thiostrepton resistance protein [Expression vector pTip-LNH1.2] gi|42733397|dbj|BAD11286.1| thiostrepton resistance protein [Expression vector pTip-LCH1.2] gi|42733404|dbj|BAD11292.1| thiostrepton resistance protein [Expression vector pTip-LNH2.2] gi|42733411|dbj|BAD11298.1| thiostrepton resistance protein [Expression vector pTip-LCH2.2] gi|51556866|gb|AAU06204.1| thiostrepton resistance protein [Shuttle cosmid vector pHZ1358] gi|51890421|dbj|BAD42594.1| thiostrepton resistance protein [Expression vector pTip-QC1] gi|51890428|dbj|BAD42600.1| thiostrepton resistance protein [Expression vector pTip-QC2] gi|51890435|dbj|BAD42606.1| thiostrepton resistance protein [Expression vector pTip-QT1] gi|51890442|dbj|BAD42612.1| thiostrepton resistance protein [Expression vector pTip-QT2] gi|51890449|dbj|BAD42618.1| thiostrepton resistance protein [Expression vector pTip-RC1] gi|51890455|dbj|BAD42623.1| thiostrepton resistance protein [Expression vector pTip-RC2] gi|51890461|dbj|BAD42628.1| thiostrepton resistance protein [Expression vector pTip-RT1] gi|51890467|dbj|BAD42633.1| thiostrepton resistance protein [Expression vector pTip-RT2] gi|52354838|gb|AAU44620.1| thiostrepton resistance protein [Cloning vector pJK95] gi|63146878|emb|CAI94540.1| thiostrepton resistance [Cloning vector pIJ6902] gi|91795125|gb|ABE60866.1| thiostrepton resistance [Conjugative vector pHW001] gi|293628574|dbj|BAJ04913.1| thiostrepton resistance protein [Cloning vector pTip-istAB-sacB] Length = 269 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 91/259 (35%), Gaps = 4/259 (1%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 + +++ + S S + + V + ++ I + + D Sbjct: 10 PSDPAVQRIIDVTKPS--RSNIKTTLIEDVEPLMHSIAAGVEFIEVYGSDSSPFPSELLD 67 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 PV+ + ++++ E + + P + D ++VLD V Sbjct: 68 LCGRQNIPVRLIDSSIVNQLFKGERKAKTFGIARVPRPARFGDIASRRGDVVVLDGVKIV 127 Query: 145 HNIGAILRS-AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 NIGAI+R+ + I+ + L +++ G + +P + Sbjct: 128 GNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSLPVVLSGREEAIAFIRD 187 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 S + E D++AL+ G+E G +E +++ + M ++L Sbjct: 188 SGMQLMTLKADGDISVKELGDNPDRLALLFGSEKGGPSDLFEEASSASVSIPMMSQTESL 247 Query: 264 NVSNAAAVALYITQ-NHFA 281 NVS + +AL+ + A Sbjct: 248 NVSVSLGIALHERIDRNLA 266 >gi|331017065|gb|EGH97121.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 151 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G ++R C + + L ++ E+ Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 ++L L+K+ + +P A + G E +GL ++ + Sbjct: 61 ADLASCLEKIGNPRLFAFTTKG--SRPFHDASFTPGDAFLFGPESRGLPADILDSLSSEH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AVA+Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|213971171|ref|ZP_03399289.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae pv. tomato T1] gi|301382299|ref|ZP_07230717.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae pv. tomato Max13] gi|302058530|ref|ZP_07250071.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae pv. tomato K40] gi|302132197|ref|ZP_07258187.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924040|gb|EEB57617.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae pv. tomato T1] Length = 151 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G ++R C + + L ++ E+ Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 ++L L+K+ + +P A + G E +GL ++ + Sbjct: 61 ADLASCLEKIGNPRLFAFTTKG--SRPFHDASFTPGDAFLFGPESRGLPADILDSLSSEH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AVA+Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|71403879|ref|XP_804694.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70867801|gb|EAN82843.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 299 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 64/180 (35%), Gaps = 2/180 (1%) Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 D+ + ++ L L L + L+++ + +P N+ + R F+ + Sbjct: 114 DENIQRKVTPWWNGLVYNELHPRALKQEKRQPLIVLSSLLQNPVNVAGLFRCGEIFAIEK 173 Query: 162 IITTKR--YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 ++ + + ++ A+SA + + + + Sbjct: 174 VVVSDQAVFAHPHFVAAARSAELWMPWDAVMAKNLPEYLGSLRQDGYTLIGIEQTAGSVS 233 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + ++ A++LGAEG G+ + + G+I++LNV A+ +Y Sbjct: 234 IASYRFPERAAILLGAEGHGVPAELLPVLDVCVEIPQFGLIRSLNVHVTGALVMYEYTRQ 293 >gi|114561495|ref|YP_749008.1| RNA methyltransferase [Shewanella frigidimarina NCIMB 400] gi|114332788|gb|ABI70170.1| RNA methyltransferase, TrmH family, group 2 [Shewanella frigidimarina NCIMB 400] Length = 154 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 2/71 (2%) Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAA 269 ++ +P Q + L+ G E +GL + + M ++LN+SN+ Sbjct: 78 CTTKGSRPHTQIAFQENDVLLFGPETRGLPMDIIDATPLAQRLRIPMTANSRSLNLSNSV 137 Query: 270 AVALYITQNHF 280 A+ Y Sbjct: 138 AIISYEAWRQL 148 >gi|242089459|ref|XP_002440562.1| hypothetical protein SORBIDRAFT_09g003210 [Sorghum bicolor] gi|241945847|gb|EES18992.1| hypothetical protein SORBIDRAFT_09g003210 [Sorghum bicolor] Length = 220 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALYIT 276 + A + G EG GL K + ++ G +LNV+ AA++ L+ Sbjct: 93 HPFHRSTAFLFGNEGTGLSQKECDICDFFVYIPQYGGGTASLNVTVAASIVLHHF 147 >gi|291549085|emb|CBL25347.1| Predicted rRNA methylase (SpoU class) [Ruminococcus torques L2-14] Length = 164 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 1/71 (1%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268 ++ + K ++ G E G+ + E + M G I++LN+ N+ Sbjct: 76 YMATTKAHKVYTDVEYEPDCYIMFGKESAGIPEEILVEHEEDCMRIPMNGDIRSLNLGNS 135 Query: 269 AAVALYITQNH 279 A+ LY Sbjct: 136 VAIVLYEALRQ 146 >gi|170780648|ref|YP_001708980.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] gi|169155216|emb|CAQ00317.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] Length = 270 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 83/240 (34%), Gaps = 5/240 (2%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY + + + AL L Sbjct: 16 ADYSHRTDVALRKAEGAGHGIYLAESALVLERALKAGHAPRSVLAL--GGTVDEALALVG 73 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 PV T P + + ++ G +A P L + +++ ++VL+ V DP N+ Sbjct: 74 DRDVPVFTGPGELLAELTGYVLHRGVVASLDRPALPSVASLLADARRVVVLEDVVDPTNV 133 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI RS A D ++ T R + + + G + +P+ R + + GF Sbjct: 134 GAIFRSVGAIGADAVLVTPRCTDPFYRRAIRVSMGTVLQVPWTRTGEWPETRAALADAGF 193 Query: 208 QTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++K+ ++LG+EG GL + +A ++ + M I +LN Sbjct: 194 HVAALALTPDAVSIRDFPAEDHEKLVIVLGSEGPGLSAEAIRSADTVVQIPMAHGIDSLN 253 >gi|146309256|ref|YP_001189721.1| RNA methyltransferase [Pseudomonas mendocina ymp] gi|145577457|gb|ABP86989.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas mendocina ymp] Length = 154 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G I+R C + + L ++ E+ R Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANSGCQLHLIEPLGFELDDKRLRRAGLDYHEYATLKRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 ++L L + ++ +P + A + G E +GL + + Sbjct: 61 ADLQSCLDS--LGQPRLFAFTTKGSQPFHEIAYQPGDAFLFGPESRGLPEEVRNALPPEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV +Y Sbjct: 119 RVRLPMRAGCRSLNLSNTVAVTVYEAWRQ 147 >gi|86606598|ref|YP_475361.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab] gi|86555140|gb|ABD00098.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. JA-3-3Ab] Length = 269 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 24/72 (33%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + ++ + + AL+ G E +GL + + +LN+ Sbjct: 96 PYPPEWQIQSPRQAFPELLAAGPAALVFGPEDRGLSNEELALCHRQIQIPTDPAYPSLNL 155 Query: 266 SNAAAVALYITQ 277 + A + Y + Sbjct: 156 AQAVGICCYELR 167 >gi|171464223|ref|YP_001798336.1| RNA methyltransferase, TrmH family, group 2 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193761|gb|ACB44722.1| RNA methyltransferase, TrmH family, group 2 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 156 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R + P E A L ++ E Sbjct: 1 MFNVVLFEPEIPPNTGNIIRLCANTGAKLHLIEPLGFPMEDAKLRRAGLDYHEFARVKVY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 N LQ H L++ + + + G+E KG+ + + + A + Sbjct: 61 KNWAQFLQDEHPNPEHLFALTTKGSGNFHEGQYSPNDYFVFGSETKGITDEVRNSIPAHN 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN A+ +Y Sbjct: 121 RMRLAMQDSSRSLNLSNTVAIVVYEAWRQ 149 >gi|257056238|ref|YP_003134070.1| putative rRNA methylase SpoU family [Saccharomonospora viridis DSM 43017] gi|256586110|gb|ACU97243.1| predicted rRNA methylase SpoU family [Saccharomonospora viridis DSM 43017] Length = 158 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +V H P N G +R A C+ + E L ++ H Sbjct: 1 MFRIVFFHPEIPGNTGNAIRLAANTGCELHLIEPLGFSLEDRYLRRAGLDY--HDLAHIQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATS 250 + ++ + + + L+ G E GL + E T Sbjct: 59 VHRDLDAAWQALDPVHVYAFTTQAHRRHTDVDYAEGDVLLFGPESVGLPDEVLADERITD 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN++N AA+A+Y Sbjct: 119 QVRLPMLPTSRSLNLTNTAAIAVYEAWRQ 147 >gi|226942627|ref|YP_002797700.1| RNA methyltransferase TrmH, group 2 [Azotobacter vinelandii DJ] gi|226717554|gb|ACO76725.1| RNA methyltransferase TrmH, group 2 [Azotobacter vinelandii DJ] Length = 153 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G I+R C + + L ++ E+ R Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANTGCSLHLIDPLGFELDDKRLRRAGLDYHEYATLKRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 ++L L+ + ++ +P A + G E +GL + +E+ Sbjct: 61 ADLPSCLES--LGRPRLFAFTTKGSQPYHSVAYRRGDAFLFGPESRGLPQEVRESLPPEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN AVA+Y Sbjct: 119 RLRLPMRSACRSLNLSNTVAVAVYEAWRQL 148 >gi|224104027|ref|XP_002313287.1| predicted protein [Populus trichocarpa] gi|222849695|gb|EEE87242.1| predicted protein [Populus trichocarpa] Length = 264 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 9/157 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P N G I R+ A S + + A L ++ ++ Sbjct: 82 LQVVLVSPQIPGNTGCIARTCAATSVGLHLVGPLGFQVDDAKLKRAGLDYWPYVVVKVHD 141 Query: 194 NLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS- 250 + + + + L+ G+E GL P+ S Sbjct: 142 SWAEFQDYFRQQEGDKRLLAFTKRGTTTHSEFSYRKGDYLVFGSETSGLPPEALLDCKSE 201 Query: 251 -----MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 M + M ++ LN+S + +ALY Sbjct: 202 MFGGGMIRIPMVETYVRCLNLSVSVGIALYEASRQLN 238 >gi|110180258|gb|ABG54368.1| YibK [Klebsiella pneumoniae] Length = 147 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 43/139 (30%), Gaps = 3/139 (2%) Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N G I+R R++ + A G H + A Sbjct: 1 PPNTGNIIRLCANTGFSLAYHLSRWASPWDDKRLRRA-GLDYHEFTAVQRHADYAAFVAS 59 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIK 261 + + L++ D L+ G E +GL + + M + Sbjct: 60 AQPQRLFALTTKGTPAHSAVSYQDGDFLMFGPETRGLPASILDALPPEQKIRIPMMPDSR 119 Query: 262 ALNVSNAAAVALYITQNHF 280 ++N+SNA +V +Y Sbjct: 120 SMNLSNAVSVVVYEAWRQL 138 >gi|297800328|ref|XP_002868048.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297313884|gb|EFH44307.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Length = 1852 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K L+LG E +G+ + + G++++LNV + A+AL+ Sbjct: 1792 YQFPKKTVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1848 >gi|296129890|ref|YP_003637140.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] gi|296021705|gb|ADG74941.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] Length = 279 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 57/247 (23%), Positives = 90/247 (36%), Gaps = 11/247 (4%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + R + + AL + LLA + A D A P Sbjct: 19 DYVGLTDVALRMRVEAAEGLYMAESSTVLERALRAGHQPRSVLLAPRWVPAVEDMLAASP 78 Query: 89 HP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDH 140 PV ++ I G LA P L D ++ + VL+ Sbjct: 79 VDGVVPVHVAEDPVLEAITGFHVHRGALAAMHRPALPAVADVLAAARGGAGARRVAVLED 138 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + D N+GA RSA A D ++ T R + + + G + +P+ RI D + Sbjct: 139 LVDHTNVGAAFRSAAALGVDAVLVTPRCADPLYRRAVRVSMGTVFQVPWTRIDPWPDGIA 198 Query: 201 KMHSWGFQTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 + GF T +++AL+LGAEG GL+P+T + M Sbjct: 199 TLRQAGFVTASLALSEDSVPLDELVADPPERLALVLGAEGDGLKPETVAAGDLTVRIPMA 258 Query: 258 GIIKALN 264 G + +LN Sbjct: 259 GGVDSLN 265 >gi|149180216|ref|ZP_01858721.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1] gi|148852408|gb|EDL66553.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1] Length = 156 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 1/149 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N I + + ++ ++ ++ E + Sbjct: 1 MAINVVLYQPEIPANTANIALTCAVTDTALHLIRPIGFSTDEKMIKRAGLDYWESVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-S 250 +L + K H + + + + + G E GL E Sbjct: 61 YDSLEEFFSKNHGEFYYIETYGEKAHSSFDFSDVTKEHYFMFGKETTGLPEDLPERYHGH 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 121 FLRIPMNDNVRSLNLSNTAAILVYEALRQ 149 >gi|228470939|ref|ZP_04055784.1| SpoU rRNA methylase family protein [Porphyromonas uenonis 60-3] gi|228307336|gb|EEK16350.1| SpoU rRNA methylase family protein [Porphyromonas uenonis 60-3] Length = 186 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 22/47 (46%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 LI+G E G+ + + A + G +LNVS A +A+Y Sbjct: 126 VLIVGNEVHGVSDEVIQYADYCLEIPQYGTKHSLNVSVATGIAIYDL 172 >gi|146339026|ref|YP_001204074.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278] gi|146191832|emb|CAL75837.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278] Length = 161 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 52/144 (36%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + P N G ILR I ++ L+H+ + R + Sbjct: 3 IALYQPDIPQNTGTILRLCACLGLAAHIIEPAGFAVSDRQFRRAGMDYLDHLDWRRHDSW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + G++ + L++ L+LG E G+ + A + + Sbjct: 63 SAFEAWRATQGYRLLLLTTKGATSYLDISYRPDDILLLGRESVGVPATVADAADARLRIP 122 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 + +++LNV+ A+A+A Sbjct: 123 LKPGMRSLNVAIASAMAAGEALRQ 146 >gi|116253233|ref|YP_769071.1| aminotransferase/methyltransferase [Rhizobium leguminosarum bv. viciae 3841] gi|115257881|emb|CAK08979.1| putative aminotransferase/methyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 153 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 51/149 (34%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + L + L + P N G ILR A + L ++ + Sbjct: 1 MTSLRLALYQPDIPGNTGTILRLAACLGFAVDLIEPAGFDISDRNLKRAGMDYIAAAALT 60 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R + + G + I S+ + + L+ G E G+ + ETA + Sbjct: 61 RHVSWDRFEAWRLTTGRRLILASTKAAERYTDLSFRPDDVLLFGRESAGVPDQVHETADA 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++NV+ +AA+ + Sbjct: 121 RVLIPMVEGQRSINVAVSAAMIVGEAMRQ 149 >gi|121607435|ref|YP_995242.1| tRNA/rRNA methyltransferase SpoU [Verminephrobacter eiseniae EF01-2] gi|121552075|gb|ABM56224.1| tRNA/rRNA methyltransferase (SpoU) [Verminephrobacter eiseniae EF01-2] Length = 168 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R A C + E + ++ E+ + Sbjct: 1 MFHIVLVEPEIPPNTGNVIRLAANTGCTLHLIEPLGFSMEDRRMRRAGLDYHEYARVLCH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 ++ L+ + L++ S + + + GAE +GL + Sbjct: 61 ADWAAFLRTARPDASRMFALTTQSLQWVHATCFRPGDWFVFGAETRGLAAALRASFAPAQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 121 CLRLPMIEGQRSLNLSNAVAVTVFEAWRQ 149 >gi|87120919|ref|ZP_01076811.1| putative tRNA/rRNA methyltransferase [Marinomonas sp. MED121] gi|86163757|gb|EAQ65030.1| putative tRNA/rRNA methyltransferase [Marinomonas sp. MED121] Length = 157 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G ++R + + + ++ H Sbjct: 1 MLNIVLYQPEIPPNTGNVIRLCANTGYKLHLIEPLGFDLDEKKVRRAGLDY--HELARVK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + L++ K + L+ G E +GL + E A Sbjct: 59 RHKDWQAFVDSQEIGKVYALTTKGSKVPSEAKFEANDVLVFGPETRGLPIEFIEALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN A+ +Y + Sbjct: 119 RLRLPMQPNSRSLNLSNTVAIMVYESWRQL 148 >gi|313471795|sp|A0KEQ6|TRML_AERHH RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL Length = 156 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + + ++ H Sbjct: 1 MLDIVLYQPEIPPNTGNIIRLCANTGYRLHLIEPLGFEWDDKRVKRAGLDY--HEFAEVK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + ++ + AL+ G E +GL + E+ Sbjct: 59 RWPNFEAFLEAVAPTRVFACTTKGRTAHSAVQFAAGDALLFGPESRGLPIEIIESLPFEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N++NA AV +Y + Sbjct: 119 RLRIPMLPQSRSMNLANAVAVFVYESWRQL 148 >gi|300774602|ref|ZP_07084465.1| SpoU family RNA methylase [Chryseobacterium gleum ATCC 35910] gi|300506417|gb|EFK37552.1| SpoU family RNA methylase [Chryseobacterium gleum ATCC 35910] Length = 176 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 60/160 (37%), Gaps = 3/160 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 T V L+++LD++ HN+GA R+A AF + II + K+A GA Sbjct: 17 TFKKVEKIPLVIILDNIRSMHNVGAAFRTADAFLIEKIILCGITPQPPHREIHKAALGAT 76 Query: 185 EHIPYIRISNLTD---ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 E + + ++ L+ + K+ K ALILG E +G+ Sbjct: 77 ESVDWSHEADTNTAVADLKSNGYEIIGIEQTTDSQMITDFTIDKSKKYALILGNEVEGIS 136 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + G +LNVS + ++ Sbjct: 137 DEVLPNIDVFLEIPQLGTKHSLNVSVCGGIVMWEFAKALK 176 >gi|127513248|ref|YP_001094445.1| RNA methyltransferase [Shewanella loihica PV-4] gi|126638543|gb|ABO24186.1| RNA methyltransferase, TrmH family, group 1 [Shewanella loihica PV-4] Length = 252 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +A++ G E GL + + +LN++ A + Y + Sbjct: 106 NGPVAIVFGRESNGLSNDELQKCNYHVTIPANPEYTSLNLAQAVQIICYEAR 157 >gi|296535160|ref|ZP_06897385.1| TrmH family RNA methyltransferase [Roseomonas cervicalis ATCC 49957] gi|296264512|gb|EFH10912.1| TrmH family RNA methyltransferase [Roseomonas cervicalis ATCC 49957] Length = 77 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 27/51 (52%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + I L++G E +GL + + L G +++LNVS AAAV ++ Sbjct: 18 DRPIVLVMGNEEQGLPEASIAACAARVTLPGSGAVESLNVSVAAAVLMHAL 68 >gi|319945283|ref|ZP_08019545.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599] gi|319741853|gb|EFV94278.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599] Length = 183 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 2/154 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L +++ + P + + R+ + + IT + + + S + A Sbjct: 22 CANTGCALHLIEPLGFPIDHAKMRRAGLDYHEFTAITVHKNWAAFLDSMRASMAAASGSY 81 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 P S + + + + GLS+ K L+ G E GL Q++ Sbjct: 82 PQAAPSQTPHSNARQIPFSGRLYGLSTSGHKSPYDHRFLPGDCLVFGRETSGLPDDVQDS 141 Query: 248 A--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L M ++LN+SNA AV ++ Sbjct: 142 LGTDHLLRLPMRPHNRSLNLSNAVAVTVFEAWRQ 175 >gi|271966808|ref|YP_003341004.1| tRNA/rRNA methyltransferase [Streptosporangium roseum DSM 43021] gi|270509983|gb|ACZ88261.1| putative tRNA/rRNA methyltransferase [Streptosporangium roseum DSM 43021] Length = 186 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L++G+E G P E A + ++ G + + NV+ A A+AL + Sbjct: 117 HAAELGGDVCLVVGSEDHGCSPALLEAADGVCYIPQVGRVGSFNVAVATAIALAEARRR 175 >gi|294140359|ref|YP_003556337.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12] gi|293326828|dbj|BAJ01559.1| RNA methyltransferase, TrmH family, group 1 [Shewanella violacea DSS12] Length = 252 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 21/53 (39%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A++ G E GL + + + +LN++ A + Y + Sbjct: 105 LDGPVAIVFGRENNGLSNEELQKCNYHVSIPANPEYTSLNLAQAVQIICYEAR 157 >gi|221056833|ref|XP_002259554.1| rna methyltransferase [Plasmodium knowlesi strain H] gi|193809626|emb|CAQ40327.1| rna methyltransferase, putative [Plasmodium knowlesi strain H] Length = 333 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 85/272 (31%), Gaps = 21/272 (7%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA-----LNNPSRKIFQL 71 D+ Y + + + K + +K + + F V + L + F++ Sbjct: 69 DNEYLSISKRSKMMKYIIRLRKKRNFRKKMNSFF------VKESSTITHLASNHNLTFEV 122 Query: 72 LATKNALARLDWDANLPHPFPVKTVPPQTIDKI---VGKEAVHQGLALETAPLLSPTLDA 128 + +K+ + D + T++ I K L ++ Sbjct: 123 ILSKS---KSLLDHFKEKCSKLYYTDIDTLNYIFRDTLKVNKEARNDAVAVVKLPKSVQP 179 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--- 185 + L+ D + +N+G IL +A + D + + + + +G+ Sbjct: 180 KEPIKFLLAFDRIRYAYNLGKILNTAASMGVDYLFYVHNTVDPFNHKVIEVTNGSHFQIP 239 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 ++ + + E + + LILG E G Sbjct: 240 YLFGSYVELRQFCDSHKLLPVVAHTNGVNPVHILKETSEQGKGVCLILGNESTGPHADVL 299 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A L M + +LNV AA++ ++ + Sbjct: 300 NFA-KPISLPMHEMTNSLNVYVAASILIHYLK 330 >gi|160915913|ref|ZP_02078121.1| hypothetical protein EUBDOL_01936 [Eubacterium dolichum DSM 3991] gi|158432389|gb|EDP10678.1| hypothetical protein EUBDOL_01936 [Eubacterium dolichum DSM 3991] Length = 169 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 2/150 (1%) Query: 133 QLLMVLDHVNDPHNIGAILR-SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I+R + + +I +S E + + + Sbjct: 1 MLHVVLYEPEIPQNTGNIMRTCMASNTVLHLIEPLGFSLDEQHLKRAGMDYVKDLDYRVY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250 + Q + + + I LILG E G+ + + Sbjct: 61 KNWEEFTSQNPSENYYYMTRYGKKAPSAFDFTSCVGDIYLILGKESTGIPKEILKHQLDH 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN AA+ +Y Sbjct: 121 CMRLPMVAKARSLNLSNCAAIIVYEVLRQL 150 >gi|160893756|ref|ZP_02074540.1| hypothetical protein CLOL250_01310 [Clostridium sp. L2-50] gi|156864741|gb|EDO58172.1| hypothetical protein CLOL250_01310 [Clostridium sp. L2-50] Length = 163 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268 ++ SK+ + ++ G E G+ + + + + M I++LN++N+ Sbjct: 76 YMATTKSKQKYTDVNYEEDAYIMFGKESAGIPEEILLDYKETAVRIPMFPEIRSLNLANS 135 Query: 269 AAVALYITQNH 279 A+ LY Sbjct: 136 VAIVLYEALRQ 146 >gi|237728908|ref|ZP_04559389.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226909530|gb|EEH95448.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 157 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R I + L ++ H + Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFTAVL 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + A + L++ D L+ G E +GL + A Sbjct: 59 RHPDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y + Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWHQL 148 >gi|262371910|ref|ZP_06065189.1| rRNA methylase [Acinetobacter junii SH205] gi|262311935|gb|EEY93020.1| rRNA methylase [Acinetobacter junii SH205] Length = 157 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 3/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I+R + + L ++ E + Sbjct: 1 MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMLIW 60 Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--T 249 N+ L + S G + + ++ N +AL++G E +GL + Sbjct: 61 DNIELCLADLKSKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRMMFPQE 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV +Y Sbjct: 121 QWIRLPMAENSRSLNLSNATAVIVYEAWRQ 150 >gi|157961311|ref|YP_001501345.1| RNA methyltransferase [Shewanella pealeana ATCC 700345] gi|157846311|gb|ABV86810.1| RNA methyltransferase, TrmH family, group 1 [Shewanella pealeana ATCC 700345] Length = 254 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 21/53 (39%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +A++ G E GL + + + +LN++ A + Y + Sbjct: 105 LNGPVAIVFGRENNGLTNEELQRCDYHVAIPANPEYTSLNLAQAVQIICYEAR 157 >gi|212634526|ref|YP_002311051.1| RNA methyltransferase TrmH, group 1 [Shewanella piezotolerans WP3] gi|212556010|gb|ACJ28464.1| RNA methyltransferase TrmH, group 1 [Shewanella piezotolerans WP3] Length = 254 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 20/53 (37%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + + +LN++ A + Y + Sbjct: 105 LTGPVAIVFGRENNGLTNEELQRCDYHVAIPANPEYTSLNLAQAVQIICYEAR 157 >gi|167623500|ref|YP_001673794.1| RNA methyltransferase [Shewanella halifaxensis HAW-EB4] gi|167353522|gb|ABZ76135.1| RNA methyltransferase, TrmH family, group 1 [Shewanella halifaxensis HAW-EB4] Length = 251 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 20/53 (37%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + + +LN++ A + Y + Sbjct: 105 LTGPVAIVFGRENNGLTNEELQRCDYHVAIPANPEYTSLNLAQAVQIICYEAR 157 >gi|119776572|ref|YP_929312.1| RNA methyltransferase TrmH, group 2 [Shewanella amazonensis SB2B] gi|119769072|gb|ABM01643.1| RNA methyltransferase TrmH, group 2 [Shewanella amazonensis SB2B] Length = 158 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 4/153 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + S + L N G I+R C+ + E L ++ + Sbjct: 1 MPASMFHIALYEPEIAPNTGNIIRLCANNGCELHLIEPLGFDLEEKKLRRAGLDYSDMTR 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R + L+ M + ++ +P + L+ G E +GL + Sbjct: 61 VTRHKDFPSFLEAMAGRRI--LACTTKGSRPHTELEYQAGDVLLFGPESRGLPMDIINSV 118 Query: 249 --TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ Y Sbjct: 119 PTEQRLRIPMVESSRSLNLSNAVAIISYEAWRQ 151 >gi|254562622|ref|YP_003069717.1| TRNA/rRNA methyltransferase [Methylobacterium extorquens DM4] gi|254269900|emb|CAX25878.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens DM4] Length = 269 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 78/241 (32%), Gaps = 5/241 (2%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + G T+ + +R + + D PV + + Sbjct: 29 RQGRFIVEGEVTLRLLFSGRARFAAESVLLAPERWPGFADLLRGDGPPVYLAGKDVMSAV 88 Query: 105 VG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 G V P + L++ L + + N+G + R+A AF D Sbjct: 89 AGFPIHRGVLAVGLRGQEPPPESVIPPAPAPALVVGLVGLTNHDNVGGLFRNAAAFGADA 148 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 + + ++GA +P+ R + L + L+ + L+ Sbjct: 149 VWLDAETCDPLYRKAIRVSAGAALTVPFARAPSGAALLDLAERHALTPLALTPGGSETLD 208 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHF 280 + + L+LG EG GL A + M +LNV+ A A+AL+ Sbjct: 209 RLDPPARALLLLGTEGPGLPESLMARA-RRVRIAMAPGFDSLNVATAGAIALHHLAGRRL 267 Query: 281 A 281 A Sbjct: 268 A 268 >gi|149375019|ref|ZP_01892792.1| rRNA methylase [Marinobacter algicola DG893] gi|149360908|gb|EDM49359.1| rRNA methylase [Marinobacter algicola DG893] Length = 284 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +AL+ G E GL + + H+ +LN++ A V Y + H+ K Sbjct: 122 VALVFGRENHGLSNEELQRCHFHIHIPSNPDYSSLNLAMAVQVMCYELRMHYLK 175 >gi|288962013|ref|YP_003452323.1| RNA methyltransferase, TrmH family, group 2 [Azospirillum sp. B510] gi|288914293|dbj|BAI75779.1| RNA methyltransferase, TrmH family, group 2 [Azospirillum sp. B510] Length = 165 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 53/144 (36%), Gaps = 2/144 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL + P N G ++R A + + L ++ ++H+ + R S+ Sbjct: 3 LVLFEPDIPQNTGTLMRLAAGLGVALDLIEPCGFLLDDRRLRRAGMDYIDHLDWTRHSSW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + + D+ +++G E G+ + + A + + Sbjct: 63 AAYCATPRDGRLVLLTTRAAIPYTDFRFAPGDR--ILVGRESAGVPDEVHDAADARLLIP 120 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 M ++LNV+ +AA+ L Sbjct: 121 MMPPARSLNVAVSAAMVLGEALRQ 144 >gi|297821280|ref|XP_002878523.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297324361|gb|EFH54782.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Length = 260 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 9/157 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P N G I R+ A + + + A + ++ + S Sbjct: 79 LQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDARVKRAGLDYWPFVVVRAHS 138 Query: 194 NLTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS- 250 + + + + I + + L+ G+E GL P+ Sbjct: 139 SWAEFQEYFRQQEGEKRMIAFTKRGTRIHSDFSYRPGDYLLFGSETCGLPPEALSDCKHE 198 Query: 251 -----MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 + M ++ LN+S + +ALY Sbjct: 199 PYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQLN 235 >gi|44662935|gb|AAS47553.1| putative RNA methylase [symbiont bacterium of Paederus fuscipes] Length = 158 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G I+R C + ++ L ++ E+ R Sbjct: 1 MFQIILFQPEIPPNTGNIIRLCANAGCGLHLIEPLGFELDNKRLRRAGLDYHEYTNVRRY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 +L L+ + ++ + + A + G E +GL + + Sbjct: 61 PDLRSCLES--LAQPRLFAFTTKGSRAFHEVDYQRGDAFLFGPESRGLPGRVRNALLPEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M G ++LN+SN A+A+Y Sbjct: 119 RLRLPMRGGCRSLNLSNTVAIAVYEAWRQL 148 >gi|325859781|ref|ZP_08172911.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS 18C-A] gi|325482707|gb|EGC85710.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS 18C-A] Length = 205 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + AL++G E KG++ + + + G +LNVS A + ++ Sbjct: 144 HPKPDTRYALVMGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTAGIVIWEFARRL 202 >gi|269925611|ref|YP_003322234.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC BAA-798] gi|269789271|gb|ACZ41412.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC BAA-798] Length = 180 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L+ +L + DP N+GA R A II T + + +A GA I Sbjct: 23 QRPEVDLVFLLQDLEDPVNVGAAFRIADGCEASEIILTGKTPTPPDSTIAGVGRGAHRRI 82 Query: 188 PYIRISNLTDALQKMHSWGFQ-TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 P+ + + +AL ++ G+ ++ P D++ L++G E G+ +T Sbjct: 83 PWRYVEHADEALVELKGMGYMACAIEVAEGAVPYYSLKYPDRVCLVVGHEYHGVTTRTLS 142 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + ++ M G IK+LNV A AV + + Sbjct: 143 VCDNAVYIPMYGKIKSLNVHVALAVVAFHVLHQ 175 >gi|118374625|ref|XP_001020500.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila] gi|89302267|gb|EAS00255.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila SB210] Length = 3004 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 80/227 (35%), Gaps = 2/227 (0%) Query: 54 VHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 + + N I+QL ++A + D L ++ +P + ++ + Sbjct: 1869 ENVIEEIKNVCMNLIYQLKEHEDAPPKKDDLWRLKTQEFIQDIPIPDLSEVTNFQRKIDV 1928 Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE- 172 + E + + + +++V + N G + R++ F ++ + E Sbjct: 1929 VQNELDQIEAEKKKRRKEKDIIVVASLLEKIPNFGHLTRTSEIFGVSSLVIPNKAILEEE 1988 Query: 173 -SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 ++ +A L + + K + K ++ + DK L Sbjct: 1989 GFKAISVTAEKWLPIQEVKEKDLMAFLILKKKLGYKIVGLEQTSKSKMIQHQEFPDKCIL 2048 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +LG E G+ + E + G +++LNV +A + ++ N Sbjct: 2049 LLGREKTGIPLEYIEILDECVEIPQFGQVRSLNVHVSAVICIWEFVN 2095 >gi|50085960|ref|YP_047470.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] gi|49531936|emb|CAG69648.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] Length = 159 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 5/152 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I+R + + L ++ E+ Sbjct: 1 MIHVVLFEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEYARMKIW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 N+ L+ + S G + + K N +AL++G E +GL + Sbjct: 61 DNIEQCLESLKSQGISESDIFPLTTKGSATPHTVDLNRPVALLMGPETRGLPESVRFMFP 120 Query: 250 SM--AHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV +Y Sbjct: 121 QKNWIRLPMAENSRSLNLSNATAVIVYEAWRQ 152 >gi|297620440|ref|YP_003708577.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] gi|297375741|gb|ADI37571.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] Length = 225 Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 32/90 (35%) Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 S+ + + GF G + PL + + G E GL Sbjct: 94 RWMNLHSHSSLDTFQKSMKGFVIYGATPHGNTPLHALSLDRPCCFLFGNEKNGLTDAALN 153 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276 TS + M G ++ N+S AAA+ L+ Sbjct: 154 ICTSHFTIPMYGFCESFNLSVAAAITLHHA 183 >gi|238028709|ref|YP_002912940.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1] gi|237877903|gb|ACR30236.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia glumae BGR1] Length = 156 Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 44/149 (29%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R + P E A L ++ E+ Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLVEPLGFPLEDAKLRRAGLDYHEYARMHVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + L + ++ + + GAE +GL Sbjct: 61 RDWEALLAAEQPDPARMFAFTTRGSGRFHDRVFRPGDWFVFGAETRGLGEAMLARFPDEQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV ++ Sbjct: 121 RVRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149 >gi|46446016|ref|YP_007381.1| hypothetical protein pc0382 [Candidatus Protochlamydia amoebophila UWE25] gi|46399657|emb|CAF23106.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 148 Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 4/145 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++L P N G I+R+ D ++ S L++ + +S + Sbjct: 3 IILFQPQIPQNAGNIVRTCAVTGTDLMMVHP---LGFSTHDRWLKRAGLDYWEGVSVSFI 59 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254 + + + SS + + LI G+E GL QE + Sbjct: 60 ENLENYLENQQASFYFFSSKATTLYTEVSYAADSFLIFGSETSGLPSIFQEKWGNRFVKI 119 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 M ++ LN++ +A +ALY Sbjct: 120 PMKPKVRCLNLATSAGIALYEAWRQ 144 >gi|295103485|emb|CBL01029.1| Predicted rRNA methylase (SpoU class) [Faecalibacterium prausnitzii SL3/3] Length = 168 Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 4/153 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + L +VL P N G + R+ +C + + L + ++ Sbjct: 1 MMDKPTLNIVLVEPRIPQNTGNVARTCACTACRLHLVGPMGFAIDDKKLKHAGLDYWHYL 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246 L D + + + + + + D L+ G E GL E Sbjct: 61 DITYYDGLADFFARNNGPYYYFT---TKAPQRYTDVQYPDGAYLVFGREDAGLPEALLAE 117 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN+ AV +Y Sbjct: 118 NQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQ 150 >gi|118497153|ref|YP_898203.1| RNA methyltransferase [Francisella tularensis subsp. novicida U112] gi|134302459|ref|YP_001122429.1| RNA methyltransferase [Francisella tularensis subsp. tularensis WY96-3418] gi|194323451|ref|ZP_03057228.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp. novicida FTE] gi|254373981|ref|ZP_04989463.1| tRNA/rRNA methyltransferase [Francisella novicida GA99-3548] gi|118423059|gb|ABK89449.1| RNA methyltransferase, SpoU family [Francisella novicida U112] gi|134050236|gb|ABO47307.1| RNA methyltransferase, TrmH family, group 2 [Francisella tularensis subsp. tularensis WY96-3418] gi|151571701|gb|EDN37355.1| tRNA/rRNA methyltransferase [Francisella novicida GA99-3548] gi|194322306|gb|EDX19787.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp. novicida FTE] gi|328676622|gb|AEB27492.1| tRNA (cytosine34-2'-O-)-methyltransferase [Francisella cf. novicida Fx1] Length = 155 Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 3/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + L P N G I+R + E L ++ H Sbjct: 1 MISIALYEPEIPPNTGNIIRLCANVGAKLHLIEPFGFKLEDKQLRRAGLDY--HEFADLK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 A + Q ++ +K+ Q + L+ G E +GL E Sbjct: 59 IYKNFAEFYQQNKDKQIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPADVLELLKQTQ 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SN+ AV LY N+ Sbjct: 119 LKIPMHKNSRSLNLSNSVAVILYGALNNI 147 >gi|160942978|ref|ZP_02090216.1| hypothetical protein FAEPRAM212_00455 [Faecalibacterium prausnitzii M21/2] gi|158445672|gb|EDP22675.1| hypothetical protein FAEPRAM212_00455 [Faecalibacterium prausnitzii M21/2] Length = 168 Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 4/153 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + L +VL P N G + R+ +C + + L + ++ Sbjct: 1 MMDKPTLNIVLVEPRIPQNTGNVARTCACTACRLHLVGPMGFAIDDKKLKHAGLDYWHYL 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246 L D + + + + + + D L+ G E GL E Sbjct: 61 DITYYDGLADFFARNNGPYYYFT---TKAPQRYTDVQYPDGAYLVFGREDAGLPEALLVE 117 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN+ AV +Y Sbjct: 118 NQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQ 150 >gi|152994588|ref|YP_001339423.1| RNA methyltransferase [Marinomonas sp. MWYL1] gi|150835512|gb|ABR69488.1| RNA methyltransferase, TrmH family, group 2 [Marinomonas sp. MWYL1] Length = 157 Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G ++R + E L ++ H Sbjct: 1 MLHIVLYQPEIPPNTGNVIRLCANTGYHLHLIEPLGFELEDKKLRRAGLDY--HEFTRLK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + L++ + + L+ G E +GL + E Sbjct: 59 RYPDFQAFVNQNEIGTIYALTTKGSHTHSEASFAENDVLVFGPETRGLPAEFIEALPPAQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN AV +Y + Sbjct: 119 RLRLPMQANSRSLNLSNTVAVMVYESWRQL 148 >gi|327399542|ref|YP_004340411.1| tRNA/rRNA methyltransferase SpoU [Hippea maritima DSM 10411] gi|327182171|gb|AEA34352.1| tRNA/rRNA methyltransferase (SpoU) [Hippea maritima DSM 10411] Length = 162 Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 3/161 (1%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + L+ +VL + P N G I R VA + + L ++ Sbjct: 1 MQRNFLLNDNHKCNFHIVLFQPDIPPNTGNIARLCVATNSTLHLIKPLGFSLNDKRLKRA 60 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 E++ +L+D L K + F + + LI G+E +G Sbjct: 61 GLDYWENLKLEMHDSLSDFLNKYGNRKFFLASTKAVKPYFE--VYFEEGDFLIFGSETQG 118 Query: 240 LRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L E ++ M +++LN++++ AV LY Sbjct: 119 LPNDFIEANLDKAINIPMTDKVRSLNLADSVAVVLYEAIRQ 159 >gi|310827287|ref|YP_003959644.1| RNA methyltransferase [Eubacterium limosum KIST612] gi|308739021|gb|ADO36681.1| RNA methyltransferase [Eubacterium limosum KIST612] Length = 154 Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 3/69 (4%) Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPG--IIKALNVSNAAAV 271 +K L+ G E GL + + M ++LN+SN+ + Sbjct: 80 HAKAFYSDIEYTGDAYLLFGRETAGLPDEIHSAYPDHRFRIPMRNHERARSLNLSNSVNI 139 Query: 272 ALYITQNHF 280 LY Sbjct: 140 VLYEALRQL 148 >gi|188585180|ref|YP_001916725.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349867|gb|ACB84137.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus JW/NM-WN-LF] Length = 152 Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + ++ K L+ G E +GL Sbjct: 50 YWDKLSYQVHENFTSVENLLQTHPIYIATTRGKNYYYDIEYPRDSVLVFGKETEGLPDWI 109 Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + M ++LN+SN+ AV L+ Sbjct: 110 INKYYENSIRIPMAPDFRSLNLSNSVAVVLFEALRQ 145 >gi|227496022|ref|ZP_03926333.1| SpoU family rRNA methyltransferase [Actinomyces urogenitalis DSM 15434] gi|226834415|gb|EEH66798.1| SpoU family rRNA methyltransferase [Actinomyces urogenitalis DSM 15434] Length = 155 Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 49/149 (32%), Gaps = 6/149 (4%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L ++ P N GA +R + + + ++ + + Sbjct: 3 HVLHVIFFEPRIPGNSGAAIRLSANTGSMLHLVDPLFDMDDAKLRRAGLD----YHDLAN 58 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TAT 249 + + + ++ + + + AL+ G E GL + E + Sbjct: 59 TRVHASWQECLEQVPGRIFAFTAHTSQLYTEVEWRGDDALLFGPEPTGLPEEIMEDPRVS 118 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278 + M ++LN++N+AAV LY Sbjct: 119 GRVRIPMMEGNRSLNLANSAAVGLYEAWR 147 >gi|71737140|ref|YP_277002.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557693|gb|AAZ36904.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326466|gb|EFW82518.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076] gi|320331759|gb|EFW87697.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] gi|330872585|gb|EGH06734.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] gi|330891655|gb|EGH24316.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020] Length = 151 Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G ++R C + + L ++ E+ Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 +L L+K+ + +P A + G E +GL ++ + Sbjct: 61 PDLASCLEKIGNPRLFAFTTKG--SRPFHDASFEPGDAFLFGPESRGLPADILDSLSSEH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AVA+Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|33862607|ref|NP_894167.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9313] gi|33634523|emb|CAE20509.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9313] Length = 275 Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 82/280 (29%), Gaps = 41/280 (14%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHT-----------VSAALNNPSRKIFQLL 72 R + ++++ G + L R + Sbjct: 4 SRRNPLVRRLKFLASS------------EGRQEQALLLLEGTHLLQEVLRTTHRPKEIVA 51 Query: 73 ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132 D LP + V P ++ + + +L L ++ + Sbjct: 52 TNFWLERHGDLVQALPAETLIHQVTPSVLEASLTTVSPDGVASLVPLDSLPQAVNQAK-- 109 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-------------ESAVLAKS 179 ++ LD + DP N+G +LR+A+A + + P + Sbjct: 110 -FVLALDRLQDPGNLGTLLRTALAAEVEAVWLASGADPLSPKVLRASAGAILQLPYQRFG 168 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 +SG + ++ S P Q L+LG EG G Sbjct: 169 SSGQEAVEQLAEQLEWAASHGLQVVATMVPGSSAAHSCLPYWQLDWRKPTVLVLGNEGSG 228 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAV-ALYITQN 278 L P+ Q T L +++LNV+ A AV L + Sbjct: 229 LHPRLQACCTDCVTLPHSAAVESLNVA-AVAVPLLLERRR 267 >gi|304383767|ref|ZP_07366226.1| SpoU family RNA methylase [Prevotella marshii DSM 16973] gi|304335291|gb|EFM01562.1| SpoU family RNA methylase [Prevotella marshii DSM 16973] Length = 181 Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 3/159 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++VLD V +N+G++ RS AF I + A + K+A GA Sbjct: 17 EFKEAEKLPLVVVLDDVRSLYNVGSVFRSCDAFRISAIYLCGITACPPHAEIHKTALGAE 76 Query: 185 EHIPYIRI---SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 E I + LQ + + +K + K A++LG E KG+ Sbjct: 77 ESIAWRYFATAEEAVRNLQTKGFFVYSIEQAEGSTKLHHLTLERRQKYAVVLGNEVKGVH 136 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + G +LNVS AA + ++ Sbjct: 137 QSVVDLSDGCLEIPQWGTKHSLNVSVAAGMVVWEFAKQL 175 >gi|38233828|ref|NP_939595.1| putative tRNA/rRNA methyltransferase [Corynebacterium diphtheriae NCTC 13129] gi|38200089|emb|CAE49769.1| Putative tRNA/rRNA methyltransferase [Corynebacterium diphtheriae] Length = 156 Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 4/152 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 S+L +V D+ P+N G +R++ + E L ++ H Sbjct: 1 MSKLHIVFDNPVIPNNTGNAIRTSAVTGASLHLIEPLGFNFEDKNLKRAGLDY--HDLAD 58 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--A 248 + + SS + D L+ G E GL + E Sbjct: 59 VHIHSNFDACMNALPHSRVFAFSSHATTWYTDIEYKDGDVLLFGTEPTGLPTEHLEHPRI 118 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T + M +++N+SN A++A+Y Sbjct: 119 TQQVRIPMLPARRSMNLSNCASIAIYEAWRQL 150 >gi|262281254|ref|ZP_06059036.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202] gi|262257485|gb|EEY76221.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202] Length = 157 Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 3/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I+R + + L ++ E Sbjct: 1 MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60 Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--T 249 N+ L + + G + + ++ N +AL++G E +GL + + Sbjct: 61 DNIELCLADLKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPERVRLMFPQE 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV +Y Sbjct: 121 QWIRLPMAENSRSLNLSNATAVIVYEAWRQ 150 >gi|77919053|ref|YP_356868.1| putative rRNA methylase [Pelobacter carbinolicus DSM 2380] gi|77545136|gb|ABA88698.1| putative rRNA methylase [Pelobacter carbinolicus DSM 2380] Length = 156 Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 12/97 (12%), Positives = 27/97 (27%), Gaps = 2/97 (2%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + + S +++ ++ G E GL Sbjct: 55 YWEVIDVRRWESLQQLEEAFPDGRWWYTSKKAERSHVGADFQPGDFIVFGKETAGLPADL 114 Query: 245 QETA-TSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + + +++LN+S AA + LY Sbjct: 115 LARNPAHCIRIPIFSPRVRSLNLSTAAGIVLYEALRQ 151 >gi|171060485|ref|YP_001792834.1| RNA methyltransferase [Leptothrix cholodnii SP-6] gi|170777930|gb|ACB36069.1| RNA methyltransferase, TrmH family, group 2 [Leptothrix cholodnii SP-6] Length = 156 Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G ++R A C+ + + +L ++ E+ P R Sbjct: 1 MFRIVLVHPEIPPNTGNVIRLAANTGCELHLIEPLGFSMDDRLLRRAGLDYHEYAPVRRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250 + L ++ + L + + L+ G E GL +E Sbjct: 61 AGWAAFLADQRPDPATLYAFTTRGSRSLAEVVWPADAWLVFGCETSGLPEDVREQIAPAQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AVA++ Sbjct: 121 RVRLPMRAGQRSLNLSNAVAVAVFDAWRQ 149 >gi|313673216|ref|YP_004051327.1| tRNA/rRNA methyltransferase (spou) [Calditerrivibrio nitroreducens DSM 19672] gi|312939972|gb|ADR19164.1| tRNA/rRNA methyltransferase (SpoU) [Calditerrivibrio nitroreducens DSM 19672] Length = 156 Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 1/149 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L + L P N G I R + I+ K L ++ E++ + Sbjct: 1 MTLKVALFEPEIPQNTGNIARLCAGTDVELILIGKLGFSLSDKYLKRAGLDYWEYVTLHK 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250 + L + ++ LS +K + +D I I G E GL ++ Sbjct: 61 VDTLEQFFSQFPDNIYEYAFLSKFGEKYYTEIPLSDNIITIFGNESSGLPEMIRDRFMDR 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M I++ N+SN+ A+ LY Sbjct: 121 LYRIPMNDKIRSQNLSNSVAIVLYDILRR 149 >gi|238783969|ref|ZP_04627985.1| Methyltransferase [Yersinia bercovieri ATCC 43970] gi|238715077|gb|EEQ07073.1| Methyltransferase [Yersinia bercovieri ATCC 43970] Length = 167 Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 10/158 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R C + + L ++ E Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFASIKHH 60 Query: 193 SNLTDALQKMH--------SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + L + + L++ L+ G E +GL + Sbjct: 61 HDYQAFLDSEKLDGAQSAGATPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPARV 120 Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + A + M +++N+SNA +V +Y Sbjct: 121 LDVLPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 158 >gi|86142740|ref|ZP_01061179.1| spoU protein [Leeuwenhoekiella blandensis MED217] gi|85830772|gb|EAQ49230.1| spoU protein [Leeuwenhoekiella blandensis MED217] Length = 217 Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 46/151 (30%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + ++ V HN A++RS AF I + + Sbjct: 28 RTRFLTVAIEDVGHLHNTSAVMRSCDAFGVQDIHVIEELKGKRIDREIAMGAQ-KWTSVK 86 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S + + LE + AL G+E GL E A Sbjct: 87 RYDSTKNALAKLKSEGYQIVATTPHHTAHKLEDFKLDKPTALFFGSEKDGLTETVIEAAD 146 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ G ++LN+S AA+ L Sbjct: 147 EYIYIPTFGFTQSLNISVCAAILLQELTQRL 177 >gi|300857865|ref|YP_003782848.1| hypothetical protein cpfrc_00448 [Corynebacterium pseudotuberculosis FRC41] gi|300685319|gb|ADK28241.1| hypothetical protein cpfrc_00448 [Corynebacterium pseudotuberculosis FRC41] Length = 157 Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 4/147 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++ D P N G +R + E L ++ H + Sbjct: 7 IIFDQPVIPPNTGNAIRMCAGTGAHLHLAGPLGFNLEEKNLRRAGLDY--HDLAEVSIHE 64 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATSMAH 253 + ++ K AL+ G E GL +T T + Sbjct: 65 NLERCFDSLPHTRIFAFTTHGKTHHSDIRWESGDALLFGTEPTGLAEETLVHPRITQLVR 124 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNAAAVA Y Sbjct: 125 IPMLPGRRSMNLSNAAAVAAYEVWRQL 151 >gi|261752835|ref|ZP_05996544.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261742588|gb|EEY30514.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513] Length = 171 Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 1/164 (0%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 D +L + L + P N G ILR A + L ++ Sbjct: 1 MQPCGFHDTGFPMELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRA 60 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 LE R + + G + + LS+ + P + L+ G E G Sbjct: 61 GMDYLEQAALTRHPDWNRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAG 120 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282 + + A + M ++LN + + A+ +K Sbjct: 121 VPEAIHDNADERLLIPMVRSARSLNRAVSVAMTTGEALRQIRSK 164 >gi|289449578|ref|YP_003475415.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184125|gb|ADC90550.1| RNA methyltransferase, TrmH family, group 2 [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 163 Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 9/151 (5%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P+N GAI R+ VA + + + ++ +H+ Y Sbjct: 1 MLNIVLVEPEIPYNTGAIGRTCVALGAALHLVGPMGFSIDEKQVRRAGLDYWQHLNYTFY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETA 248 N+ D K + + + + G E GL + E Sbjct: 61 ENIVDFTAKHPDIKPFYATTKA--LNTYAEVSYPSETWIFFGKESAGLPEEMLLPFPERC 118 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN+ A+ Y Sbjct: 119 ---IRIPMYPQIRSLNLSNSVAIIAYEVARQ 146 >gi|325106948|ref|YP_004268016.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM 5305] gi|324967216|gb|ADY57994.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM 5305] Length = 168 Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 52/148 (35%), Gaps = 3/148 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P N G I RS VA + +S L ++ EH+ + + Sbjct: 19 LNVVLYQPEIPQNTGNIGRSCVAIGAKLWLIRPLGFQLDSRYLKRAGLDYWEHLDWEAVD 78 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMA 252 + K L+ K L+ G+E GL + E A Sbjct: 79 SW--DEVKRRLPNSNVFCLTKFGSKHPWDVSFAPGDILLFGSESSGLPVSIRGEYAGQCV 136 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 L M +++LN+++ A +Y F Sbjct: 137 RLPMRTQVRSLNLASTANAIMYEAVRQF 164 >gi|255566751|ref|XP_002524359.1| RNA binding protein, putative [Ricinus communis] gi|223536320|gb|EEF37970.1| RNA binding protein, putative [Ricinus communis] Length = 1744 Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q K L+LG E +G+ + + G++++LNV + A+AL+ Sbjct: 1683 QFAFPKKTVLVLGREKEGVPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1740 >gi|110740266|dbj|BAF02030.1| hypothetical protein [Arabidopsis thaliana] Length = 253 Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K L+LG E +G+ + + G++++LNV + A+AL+ Sbjct: 194 YQFPKKTVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 250 >gi|66048105|ref|YP_237946.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. syringae B728a] gi|63258812|gb|AAY39908.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. syringae B728a] gi|330970743|gb|EGH70809.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 151 Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G ++R C + + L ++ E+ Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 ++L L+K+ + +P A + G E +GL ++ + Sbjct: 61 ADLASCLEKIGNPRVFAFTTKG--SRPFHDASFEPGDAFLFGPESRGLPADILDSLSSEH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AVA+Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|260591998|ref|ZP_05857456.1| RNA methylase, SpoU family [Prevotella veroralis F0319] gi|260536282|gb|EEX18899.1| RNA methylase, SpoU family [Prevotella veroralis F0319] Length = 182 Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 N A+I+G E KG++ + + + + G +LNVS A + ++ Sbjct: 125 NSHYAIIMGNEVKGVKQSVVDMSDACLEIPQFGTKHSLNVSVTAGIVIWEFAKQL 179 >gi|301096892|ref|XP_002897542.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] gi|262107002|gb|EEY65054.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] Length = 681 Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L+M V+ N+ + R+ F+ ++ + ++ A + + Sbjct: 514 QRPRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWM 573 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRP 242 P + D L++ + ++ K+ L+LG E +G+ Sbjct: 574 PLEEVRPQGDDLRRALVRWKREDYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPV 633 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + G++++LNV + A+ L+ Sbjct: 634 EVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 670 >gi|194363941|ref|YP_002026551.1| tRNA/rRNA methyltransferase SpoU [Stenotrophomonas maltophilia R551-3] gi|194346745|gb|ACF49868.1| tRNA/rRNA methyltransferase (SpoU) [Stenotrophomonas maltophilia R551-3] Length = 159 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 4/154 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 Q ++L P N G ++R + E L ++ E+ Sbjct: 1 MNAAPQFHVILFQPEIPPNTGNVIRLCANTGAQLHLVEPLGFALEDKQLKRAGLDYHEYS 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +L AL ++ + + + +D A + G E +GL + Sbjct: 61 RLQVHPDLDTALARIAPKRLFALSTRA--SVRYDSVAFDDGDAFLFGPESRGLPQDVLDA 118 Query: 248 A-T-SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV +Y Sbjct: 119 LPDGHRLRLPMRPDNRSLNLSNTVAVVMYEAWRQ 152 >gi|326381925|ref|ZP_08203618.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] gi|326199351|gb|EGD56532.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] Length = 154 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +V P N G +R A C+ + A + ++ H Sbjct: 1 MFRIVYFQPCIPPNTGNAIRIAANTGCELHLIEPLGFTMTDAQVRRAGLDY--HEMANVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 + A + ++ + + L+ G E GL + T Sbjct: 59 VHPDLATAWEKLAPTRVFAFTAHATRFYTDVSYEPGDVLLFGPEPTGLPDEVLADPHVTD 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++N++NA +VALY Sbjct: 119 QLRIPMLEGRRSMNLANATSVALYEAWRQ 147 >gi|313887355|ref|ZP_07821046.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica PR426713P-I] gi|312923274|gb|EFR34092.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica PR426713P-I] Length = 184 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 22/47 (46%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 LI+G E G+ + + A + G +LNVS A +A+Y Sbjct: 126 VLIVGNEVHGISDEVIQYADDCLEIPQHGTKHSLNVSVATGIAIYDL 172 >gi|300932625|ref|ZP_07147881.1| putative rRNA methylase [Corynebacterium resistens DSM 45100] Length = 304 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 94/284 (33%), Gaps = 36/284 (12%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 D + + S + + + G V L + ++ + L L Sbjct: 21 DVRDLNSSDSRPDLPGGKGLVIAEGT-LVVPRLLASRYPVRSIVGFRPKLDALAEQLQAE 79 Query: 89 -------------HPFPVKTVPPQTIDKIVGKE-------AVHQGLALETAPLLSPTLDA 128 P V V + + ++ G + A ++ +L Sbjct: 80 GFFTSDAHRPPEYQPPQVFEVSREVLREVAGFDMHRGLVAAANRVAERGVEEVLDLVEAT 139 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 ++++ VL+ V D NIGA+ R+A D ++ + + + G + P Sbjct: 140 NDGAKVVAVLEGVGDHENIGAMFRNAAGLGVDAVLFGAATADPLYRRSVRVSMGHVLRTP 199 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ---------------EIKNDKIALIL 233 + R+ T Q+ + E+ E + +IA+++ Sbjct: 200 FARLEGKTTTWQRSLEQLRRRGYTVIALTPNTEETLMSAVALAQRRAEAEQRESRIAIMV 259 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 GAEG GL A A + M +LNV+ AAA+ Y + Sbjct: 260 GAEGPGLTEHAMRAADIRAAIPMASGTDSLNVATAAAIGFYAAR 303 >gi|288928749|ref|ZP_06422595.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 317 str. F0108] gi|288329733|gb|EFC68318.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 317 str. F0108] Length = 177 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 3/151 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L++VLD+V HN+G++LRS AF + + + SA + K+A GA + + + Sbjct: 24 PLVVVLDNVRSLHNVGSVLRSCDAFRVEAVYLCGITATPPSAEIHKTALGAEDSVTWKYF 83 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETAT 249 + +DA+ ++H+ G + + + + Q ++ + A++LG E KG++ + Sbjct: 84 AETSDAVDELHANGTKVFAVEQVANATMLQSLETKGGERYAVVLGNEVKGVQQTVVDRCD 143 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + G +LNVS AA + ++ Sbjct: 144 GCLEIPQFGTKHSLNVSVAAGIVVWEFAKKI 174 >gi|255654586|ref|ZP_05399995.1| putative RNA methylase [Clostridium difficile QCD-23m63] gi|296449360|ref|ZP_06891142.1| RNA methyltransferase [Clostridium difficile NAP08] gi|296880706|ref|ZP_06904658.1| RNA methyltransferase [Clostridium difficile NAP07] gi|296261830|gb|EFH08643.1| RNA methyltransferase [Clostridium difficile NAP08] gi|296428279|gb|EFH14174.1| RNA methyltransferase [Clostridium difficile NAP07] Length = 156 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 48/152 (31%), Gaps = 5/152 (3%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I+R+ A + + L + + Sbjct: 1 MSLNIVLVEPEIPQNTGNIIRTCAATGSTLHLVKPLGFSLDDKHLKRCGLDYWDIADIQY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 + + +K + + + + ++ G E KGL + + Sbjct: 61 YDSFEELQEKYPNSKYFFSTTKAKQSHSD--VKYEENCFIVFGKETKGLPETLLKANMDT 118 Query: 251 MAHLHM--PGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SN+ A+ +Y Sbjct: 119 CIRVPMLDVEKARSLNLSNSVAIVVYEALRQI 150 >gi|134096081|ref|YP_001101156.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans] gi|133739984|emb|CAL63035.1| Putative RNA methyltransferase [Herminiimonas arsenicoxydans] Length = 160 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 6/153 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R + P + A + ++ ++ Sbjct: 1 MFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHDYAQMKVH 60 Query: 193 SNLT----DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + L++ P + G+E KGL P +E+ Sbjct: 61 HDWQAFLDSFPADQPLNPARMFALTTHGSTPFAGLAFQPGDIFVFGSETKGLAPALRESF 120 Query: 249 T--SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV +Y Sbjct: 121 PPVQRIRLPMRPDNRSLNLSNTVAVVVYEAWRQ 153 >gi|326796919|ref|YP_004314739.1| RNA methyltransferase, TrmH family, group 2 [Marinomonas mediterranea MMB-1] gi|326547683|gb|ADZ92903.1| RNA methyltransferase, TrmH family, group 2 [Marinomonas mediterranea MMB-1] Length = 157 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 3/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G ++R + + L ++ E + Sbjct: 1 MLHIVLYQPEIPPNTGNVIRLCANTGYQLHLIEPFGFDLDDKKLRRAGLDYHEFTHVKKY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250 +N + + + G L++ + + + L+ G E +GL + E Sbjct: 61 ANWDAFIAQNENIGTLYA-LTTKGSRTHSEAEFKENDVLVFGPETRGLPAEFIEALPKPQ 119 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN AV +Y + Sbjct: 120 RLRLPMQADSRSLNLSNTVAVMVYESWRQL 149 >gi|163753137|ref|ZP_02160261.1| tRNA/rRNA methyltransferase [Kordia algicida OT-1] gi|161326869|gb|EDP98194.1| tRNA/rRNA methyltransferase [Kordia algicida OT-1] Length = 176 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 69/159 (43%), Gaps = 3/159 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + + L+++LD++ +NIG++ R++ AF + I + + ++A GA Sbjct: 16 EFKSSEKTSLIVILDNIRSLNNIGSVFRTSDAFLIEKIYLCGITAKPPHKDIHRTALGAT 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLR 241 + + + + ++++ + + + E + +K AL+ G E KG++ Sbjct: 76 DSVVWEYCEDTLALVKELQENDVKVAAIEQAENAMMLNEFQPEKQHTYALVFGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + + G +LN+S +A V L+ Sbjct: 136 QEVVSASDYVLEIPQFGTKHSLNISVSAGVVLWDVFRKL 174 >gi|120436002|ref|YP_861688.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117578152|emb|CAL66621.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 174 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ++K+ LI G E G+ + + H+ M G ++NV+ + +ALY F K Sbjct: 114 DEKLVLIAGNERHGISAEVLNLCDELYHIEMFGENSSMNVAQSVGIALYEITKAFNK 170 >gi|290967916|ref|ZP_06559466.1| putative RNA methyltransferase, TrmH family, group 2 [Megasphaera genomosp. type_1 str. 28L] gi|290782055|gb|EFD94633.1| putative RNA methyltransferase, TrmH family, group 2 [Megasphaera genomosp. type_1 str. 28L] Length = 161 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 3/148 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +V+ P N G + R A + E L ++ + Sbjct: 1 MHIVMVEPEIPGNTGNVARLCAANHMTLHLVKPLGFSLEDKYLKRAGLDYWPLVDVQVHE 60 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMA 252 N+ D + K + S ++ + L G E KGL +E Sbjct: 61 NVADVMAKYAGHAMYYLTTKS--RQCYADISFTEDDLLFFGKETKGLPESMLKEHPERCF 118 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SN+ A+ Y Sbjct: 119 RIPMIEAARSLNLSNSVAIVAYEALRQL 146 >gi|208778946|ref|ZP_03246292.1| RNA methyltransferase, TrmH family [Francisella novicida FTG] gi|254372520|ref|ZP_04988009.1| hypothetical protein FTCG_00082 [Francisella tularensis subsp. novicida GA99-3549] gi|151570247|gb|EDN35901.1| hypothetical protein FTCG_00082 [Francisella novicida GA99-3549] gi|208744746|gb|EDZ91044.1| RNA methyltransferase, TrmH family [Francisella novicida FTG] Length = 155 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 3/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + L P N G I+R + E L ++ H Sbjct: 1 MINIALYEPEIPPNTGNIIRLCANVGAKLHLIEPFGFKLEDKQLRRAGLDY--HEFADLK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 A + Q ++ +K+ Q + L+ G E +GL E Sbjct: 59 IYKNFAEFYQQNKDKQIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPADVLELLKQTQ 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SN+ AV LY N+ Sbjct: 119 LKIPMHKNSRSLNLSNSVAVILYGALNNI 147 >gi|323141072|ref|ZP_08075977.1| RNA methyltransferase, TrmH family, group 2 [Phascolarctobacterium sp. YIT 12067] gi|322414448|gb|EFY05262.1| RNA methyltransferase, TrmH family, group 2 [Phascolarctobacterium sp. YIT 12067] Length = 170 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 47/147 (31%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VL P N G I R A C + E L ++ + Sbjct: 12 MHIVLVEPEIPGNTGNIARLCAATGCHLHLVRPLGFSVEDKYLKRAGLDYWHLVDIHYYD 71 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMA 252 ++ + L+K + + S LI G E GL E S Sbjct: 72 SVYEVLEKYKDNPKYFLTTKAHSSYAD--VQYAQDSLLIFGKETAGLPETLLHEYPESCI 129 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN+ A+ Y Sbjct: 130 RIPMIEDARSLNLSNSVAIVAYEALRQ 156 >gi|325068620|ref|ZP_08127293.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces oris K20] Length = 286 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 88/259 (33%), Gaps = 23/259 (8%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY ++ + R +Q ++ A+ L L + Sbjct: 14 ADYTRLTDVALRRRLETQRGLYMAESSKVITRAVAAGHAP-RSFLMAPRHLEEMRPVIAS 72 Query: 88 PHP---------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----- 133 PV P + ++ I G LA P L+ + + +++ Sbjct: 73 AAGCAGSDDGGEVPVFVAPEEVLESITGFHLHRGALAAMNRPALAGVPELLSSARGGAGA 132 Query: 134 -LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +L+ + D N+GA RSA A D ++ T R + + + G + +P+ RI Sbjct: 133 RRVAILEDLVDHTNVGAAFRSAAALGIDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRI 192 Query: 193 SNLTDALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + T + + ++A++LG EG GL +T Sbjct: 193 ERWPAMDELHAQGFTVAALALSDTSVALDEFAASAACTGVDSRVAVVLGTEGDGLSHRTI 252 Query: 246 ETATSMAHLHMPGIIKALN 264 A + + M G + +LN Sbjct: 253 TAADEVVRIPMAGGVDSLN 271 >gi|68067975|ref|XP_675907.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56495350|emb|CAI05586.1| conserved hypothetical protein [Plasmodium berghei] Length = 188 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 G ++ + + L + L + + + +KN A + G EG Sbjct: 24 MGTHGYIKIRYFTNMIELKEYLNNNNILLYGCEITNQSIPITKHPFVKNKDTAFLFGNEG 83 Query: 238 KGLRPKTQETATSMAHLHMPGI-IKALNVSNAAAVAL 273 G+ + + + ++ G I +LNVS + A+ L Sbjct: 84 TGISEQIIKMCDQIIYIPQYGNGIASLNVSVSCAIIL 120 >gi|327188344|gb|EGE55561.1| putative tRNA/rRNA aminotransferase/methyltransferase protein [Rhizobium etli CNPAF512] Length = 154 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 47/149 (31%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + + L + N G ILR A + L +S + Sbjct: 2 MTDFRLALYQPDIAGNTGTILRLAACLGFAVDLIEPAGFDVSDRNLKRSGMDYIAAAALT 61 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R + + G + I S+ + L+LG E G+ E A + Sbjct: 62 RHVSWDRFEAWRATTGRRLILASTKAADRYTDFTFRPDDILLLGRESAGVPDHVHERADA 121 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++NV+ +AA+ + Sbjct: 122 RILIPMVEGQRSINVAVSAAMIVGEAMRQ 150 >gi|289623912|ref|ZP_06456866.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651133|ref|ZP_06482476.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. aesculi str. 2250] gi|289672258|ref|ZP_06493148.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. syringae FF5] gi|298484786|ref|ZP_07002886.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302188528|ref|ZP_07265201.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. syringae 642] gi|298160640|gb|EFI01661.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868936|gb|EGH03645.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330900934|gb|EGH32353.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. japonica str. M301072PT] gi|330954785|gb|EGH55045.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae Cit 7] gi|330980654|gb|EGH78757.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 151 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G ++R C + + L ++ E+ Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 ++L L+K+ + +P A + G E +GL ++ + Sbjct: 61 ADLASCLEKIGNPRLFAFTTKG--SRPFHDASFEPGDAFLFGPESRGLPADILDSLSSEH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AVA+Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|190892787|ref|YP_001979329.1| tRNA/rRNA aminotransferase/methyltransferase [Rhizobium etli CIAT 652] gi|190698066|gb|ACE92151.1| putative tRNA/rRNA aminotransferase/methyltransferase protein [Rhizobium etli CIAT 652] Length = 153 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 47/149 (31%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + + L + N G ILR A + L +S + Sbjct: 1 MTDFRLALYQPDIAGNTGTILRLAACLGFAVDLIEPAGFDVSDRNLKRSGMDYIAAAALT 60 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R + + G + I S+ + L+LG E G+ E A + Sbjct: 61 RHVSWDRFEAWRATTGRRLILASTKAADRYTDFTFRPDDILLLGRESAGVPDHVHERADA 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++NV+ +AA+ + Sbjct: 121 RILIPMVEGQRSINVAVSAAMIVGEAMRQ 149 >gi|70733879|ref|YP_257519.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5] gi|68348178|gb|AAY95784.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas fluorescens Pf-5] Length = 151 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G ++R C + + L ++ E+ R Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 ++L L+ + ++ +P + A + G E +GL + Sbjct: 61 ADLASCLES--LGHPRLFAFTTKGSRPFHDASFQEGDAFLFGPESRGLPADVLDALPGEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN AVA+Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEGWRQL 148 >gi|108804143|ref|YP_644080.1| tRNA/rRNA methyltransferase SpoU [Rubrobacter xylanophilus DSM 9941] gi|108765386|gb|ABG04268.1| tRNA/rRNA methyltransferase (SpoU) [Rubrobacter xylanophilus DSM 9941] Length = 223 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 69/238 (28%), Gaps = 32/238 (13%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + + G ++ A + ++ + R Sbjct: 15 YREEERLFLAEGERLLAEA----TVPPLRVFTEPEQIRR--------------------- 49 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 V G L + + +++++L+ V DP N+G ++RSA AF Sbjct: 50 ---VSTLKTPAGPVGVFPYLDVSPEELLARGRIVVLLEGVQDPGNVGTVIRSAHAFGAGV 106 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 + R ++ + A ++ + ++ Sbjct: 107 AL--SRGCADLYNPKTVRSTMGSLFRVPVARELDPLAFLELARGAGFGLAAATPGGGEPP 164 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + +G+EG GL P + +LN + AA++ LY Sbjct: 165 GSMPGGNLVVAVGSEGAGLSPGVVRACGVRVSIP--SRAPSLNAAVAASILLYEAYRR 220 >gi|315281638|ref|ZP_07870220.1| RNA methyltransferase, TrmH family, group 2 [Listeria marthii FSL S4-120] gi|313614716|gb|EFR88278.1| RNA methyltransferase, TrmH family, group 2 [Listeria marthii FSL S4-120] Length = 169 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + ++ +L ++ +++ Sbjct: 1 MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 +L + +K F I ++ N + G E GL + + Sbjct: 61 YDSLDEFFEKNAGGEFFYITKFGRHVYSDIDYSDPNKNYFFVFGKETTGLPDELLQNNEE 120 Query: 251 -MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN AA+ Y Sbjct: 121 NCLRIPMTDHIRSLNLSNTAAILAYEALRQ 150 >gi|94987568|ref|YP_595501.1| RNA methyltransferase [Lawsonia intracellularis PHE/MN1-00] gi|94731817|emb|CAJ55180.1| RNA methyltransferase, TrmH family, group 2, putative [Lawsonia intracellularis PHE/MN1-00] Length = 153 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 Q + + L+ G E GL + + + +++LN+S AA + LY Sbjct: 87 HQFMFSADDTLVFGRETAGLPKDLMDQYEHKVRIPIYSTVRSLNLSTAAGIILYQA 142 >gi|281211908|gb|EFA86070.1| tRNA/rRNA methyltransferase SpoU family protein [Polysphondylium pallidum PN500] Length = 1626 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K L+LG E G+ + E + G+ ++LNV +A++ ++ Sbjct: 1564 FQFPQKCLLLLGQEQNGIPAEYLELVDYCIEIPQFGVTRSLNVHVSASIVIWEYSQQ 1620 >gi|187932064|ref|YP_001892049.1| RNA methyltransferase, SpoU family [Francisella tularensis subsp. mediasiatica FSC147] gi|187712973|gb|ACD31270.1| RNA methyltransferase, SpoU family [Francisella tularensis subsp. mediasiatica FSC147] Length = 155 Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 3/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + L P NIG I+R + E L ++ H Sbjct: 1 MISIALYEPEIPPNIGNIIRLCANVGAKLHLIEPFGFKLEDKQLRRAGLDY--HEFADLK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 A + Q ++ +K+ Q + L+ G E +GL E Sbjct: 59 IYKNFAEFYQQNKDKQIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPADVLELLKQTQ 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SN+ AV LY N+ Sbjct: 119 LKIPMHKNSRSLNLSNSVAVILYGALNNI 147 >gi|301095544|ref|XP_002896872.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] gi|262108622|gb|EEY66674.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] Length = 681 Score = 75.6 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L+M V+ N+ + R+ F+ ++ + ++ A + + Sbjct: 514 QRPRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWM 573 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRP 242 P + D L++ + ++ K+ L+LG E +G+ Sbjct: 574 PLEEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPV 633 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + G++++LNV + A+ L+ Sbjct: 634 EVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 670 >gi|301096908|ref|XP_002897550.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] gi|262107010|gb|EEY65062.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] Length = 1346 Score = 75.6 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L+M V+ N+ + R+ F+ ++ + ++ A + + Sbjct: 1179 QRPRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWM 1238 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRP 242 P + D L++ + ++ K+ L+LG E +G+ Sbjct: 1239 PLEEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPV 1298 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + G++++LNV + A+ L+ Sbjct: 1299 EVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 1335 >gi|301096906|ref|XP_002897549.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] gi|262107009|gb|EEY65061.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] Length = 705 Score = 75.6 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L+M V+ N+ + R+ F+ ++ + ++ A + + Sbjct: 538 QRPRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWM 597 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRP 242 P + D L++ + ++ K+ L+LG E +G+ Sbjct: 598 PLEEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPV 657 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + G++++LNV + A+ L+ Sbjct: 658 EVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 694 >gi|301096904|ref|XP_002897548.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] gi|262107008|gb|EEY65060.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] Length = 681 Score = 75.6 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L+M V+ N+ + R+ F+ ++ + ++ A + + Sbjct: 514 QRPRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWM 573 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRP 242 P + D L++ + ++ K+ L+LG E +G+ Sbjct: 574 PLEEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPV 633 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + G++++LNV + A+ L+ Sbjct: 634 EVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 670 >gi|301096902|ref|XP_002897547.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] gi|262107007|gb|EEY65059.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] Length = 769 Score = 75.6 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L+M V+ N+ + R+ F+ ++ + ++ A + + Sbjct: 602 QRPRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWM 661 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRP 242 P + D L++ + ++ K+ L+LG E +G+ Sbjct: 662 PLEEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPV 721 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + G++++LNV + A+ L+ Sbjct: 722 EVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 758 >gi|301096900|ref|XP_002897546.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] gi|262107006|gb|EEY65058.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] Length = 681 Score = 75.6 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L+M V+ N+ + R+ F+ ++ + ++ A + + Sbjct: 514 QRPRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWM 573 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRP 242 P + D L++ + ++ K+ L+LG E +G+ Sbjct: 574 PLEEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPV 633 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + G++++LNV + A+ L+ Sbjct: 634 EVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 670 >gi|301096890|ref|XP_002897541.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] gi|262107001|gb|EEY65053.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] Length = 647 Score = 75.6 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L+M V+ N+ + R+ F+ ++ + ++ A + + Sbjct: 480 QRPRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWM 539 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRP 242 P + D L++ + ++ K+ L+LG E +G+ Sbjct: 540 PLEEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPV 599 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + G++++LNV + A+ L+ Sbjct: 600 EVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 636 >gi|53711292|ref|YP_097284.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46] gi|60679598|ref|YP_209742.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis NCTC 9343] gi|253564599|ref|ZP_04842056.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5] gi|255011970|ref|ZP_05284096.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis 3_1_12] gi|265764737|ref|ZP_06093012.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16] gi|313149806|ref|ZP_07811999.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12] gi|52214157|dbj|BAD46750.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46] gi|60491032|emb|CAH05780.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis NCTC 9343] gi|251948375|gb|EES88657.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5] gi|263254121|gb|EEZ25555.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16] gi|301161080|emb|CBW20617.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis 638R] gi|313138573|gb|EFR55933.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12] Length = 175 Score = 75.6 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 68/160 (42%), Gaps = 3/160 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++VLD + HNIG++ R+A AF + I + + K+A GA Sbjct: 16 EFKEADKLPLVVVLDDIRSLHNIGSVFRTADAFRIECIYLCGITATPPHPEMHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + ++N + + + S G+ + + E ++ K A+++G E KG++ Sbjct: 76 FTVDWKYVNNAVETVDNLRSEGYVVYSVEQAEGSIMLDELTLDRSKKYAVVMGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + + + G +LNVS A + ++ Sbjct: 136 QEVIDHSDGCIEIPQYGTKHSLNVSVTAGIVIWDLFKKLK 175 >gi|298714780|emb|CBJ25679.1| conserved unknown protein [Ectocarpus siliculosus] Length = 363 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 4/145 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +V ++ +P+N+ A LR+ +F S K+ A+ ++ + Sbjct: 156 LVFENPANPNNVWACLRTLDSFGIQHAHIVSDPSTYSKQARLKTMCTAMGSQKWLTLHGH 215 Query: 196 TDALQKMHSWGFQTIGLS----SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + S S P+ + + A++LG E +G+ ++ A + Sbjct: 216 DRPEDAVAKLKTDGYQVVASDLSPSAVPISEIDWSVPTAVVLGNEERGISDSMRDMADAT 275 Query: 252 AHLHMPGIIKALNVSNAAAVALYIT 276 + M G +++ N+S A ++ L Sbjct: 276 FVIPMRGFVRSFNMSVACSIILAHL 300 >gi|126174613|ref|YP_001050762.1| RNA methyltransferase [Shewanella baltica OS155] gi|125997818|gb|ABN61893.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS155] Length = 242 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +A++ G E GL + + T + +LN++ A + Y T+ Sbjct: 105 LNGPVAIVFGRENHGLSNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETR 157 >gi|312958452|ref|ZP_07772972.1| RNA methyltransferase [Pseudomonas fluorescens WH6] gi|311286995|gb|EFQ65556.1| RNA methyltransferase [Pseudomonas fluorescens WH6] Length = 151 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G ++R C + + L ++ E+ R Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFDMDDKRLRRAGLDYHEYATLKRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-T-S 250 ++L L+ + ++ +P + A + G E +GL + + Sbjct: 61 ADLASCLES--LGHPRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEVLDALPDGH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN AVA+Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEGWRQL 148 >gi|262091753|gb|ACY25342.1| rRNA methylase [uncultured actinobacterium] Length = 196 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 71/156 (45%), Gaps = 3/156 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 ++ + + + +++ D ++DP N+G I RSA A G++ T + ++ + +S++G++ Sbjct: 40 EVEELESCEWIVIADQISDPGNLGTIFRSAEAAGASGVVLTPGTVEAFNSKVVRSSAGSM 99 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +IP + + Q S + +P + KIA+++G E G+ Sbjct: 100 FYIPVFEDITIDEVKQAGFSIVGTSSHEQRG-SRPFTEASLTGKIAIVVGNEAHGMDDA- 157 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E + G ++LNV+ AA V + + Sbjct: 158 -ELVDQWITIPHRGRSESLNVAMAATVVCFEVAHQR 192 >gi|229587902|ref|YP_002870021.1| putative RNA-methyl transferase [Pseudomonas fluorescens SBW25] gi|229359768|emb|CAY46618.1| putative RNA-methyl transferase [Pseudomonas fluorescens SBW25] Length = 151 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G ++R C + + L ++ E+ R Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFDMDDKRLRRAGLDYHEYATLKRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-T-S 250 ++L L+ + ++ +P + A + G E +GL + + Sbjct: 61 ADLASCLES--LGHPRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEVLDALPDGH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN AVA+Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEGWRQL 148 >gi|56707605|ref|YP_169501.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670076|ref|YP_666633.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|224456676|ref|ZP_03665149.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370123|ref|ZP_04986129.1| RNA methyltransferase [Francisella tularensis subsp. tularensis FSC033] gi|254874426|ref|ZP_05247136.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604097|emb|CAG45096.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320409|emb|CAL08479.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|151568367|gb|EDN34021.1| RNA methyltransferase [Francisella tularensis subsp. tularensis FSC033] gi|254840425|gb|EET18861.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158763|gb|ADA78154.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis NE061598] Length = 155 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 3/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + L P N G I+R + E L ++ H Sbjct: 1 MISIALYEPEIPPNTGNIIRLCANVGAKLHLIEPFGFKLEDKQLRRAGLDY--HEFADLK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 A + Q ++ +K+ + + L+ G E +GL E Sbjct: 59 IYKNFAEFYQQNKDKQIWACTTKAKQYYHKVDFSCDDILLFGPETRGLPADVLELLKQTQ 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SN+ AV LY N+ Sbjct: 119 LKIPMHKNSRSLNLSNSVAVILYGALNNI 147 >gi|332293222|ref|YP_004431831.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] gi|332171308|gb|AEE20563.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] Length = 218 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 1/153 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + + ++ V HN A++RS +F + + + + Sbjct: 28 RTNHFTVAVEDVYQLHNTSAVIRSCESFGVQELHVIEEVNVKRIDREIAMGAQ-KWVDVQ 86 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S LE +K A+ G E +GL + A Sbjct: 87 RHSSAKHCIENLRKQGYKIVATSPHKDAHRLEDFDITEKAAIFFGRETEGLSDTVLDMAD 146 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ++ M G ++LN+S +AA+ L + Sbjct: 147 DFIYIPMVGFTESLNISVSAAITLQHIMTKLKQ 179 >gi|294497237|ref|YP_003560937.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium QM B1551] gi|295702608|ref|YP_003595683.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium DSM 319] gi|294347174|gb|ADE67503.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium QM B1551] gi|294800267|gb|ADF37333.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium DSM 319] Length = 152 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 2/147 (1%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +L P N G I R+ A + + ++ +L ++ E + + +L Sbjct: 1 MLFQPEIPANTGNIARTCAATNTTLHLVRPLGFSTDDKMLKRAGLDYWEFVNVVYHDSLE 60 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254 + +K GF I + G E KGL E L Sbjct: 61 EVFEKYPEAGFYFITKFGQQPHTTFDYSDLEQDHFFVFGRETKGLPKHIIEENMERCLRL 120 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 M +++LN+SN AA+ +Y Sbjct: 121 PMTENVRSLNLSNTAAILIYEALRQQN 147 >gi|189464794|ref|ZP_03013579.1| hypothetical protein BACINT_01138 [Bacteroides intestinalis DSM 17393] gi|189437068|gb|EDV06053.1| hypothetical protein BACINT_01138 [Bacteroides intestinalis DSM 17393] Length = 175 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 67/160 (41%), Gaps = 3/160 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++VLD++ HNIG++ R++ AF + I + + K+A GA Sbjct: 16 EFKEAEKLPLMVVLDNIRSLHNIGSVFRTSDAFRVECIYLCGITATPPHPEMHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + + N +A+ + G+ + + E + K A+++G E KG++ Sbjct: 76 FTVDWKYVDNCVEAVDNLKKEGYTVYSVEQAEGSIMLDELSLDRTKKYAVVMGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + + + G +LNVS A + ++ Sbjct: 136 QEVIDHSDGCIEIPQYGTKHSLNVSVTAGIVIWDLFKKLK 175 >gi|189024698|ref|YP_001935466.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] gi|189020270|gb|ACD72992.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] Length = 228 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 7/216 (3%) Query: 63 NPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 + + LL +N L L LP PV +VP +D + G VH+G+ Sbjct: 8 SARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRK 66 Query: 122 LSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 P L + L++VL +++ N+G+I R+A AF D ++ + Sbjct: 67 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAI 126 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 + + GA +PY + D + GF + L+ + + + + ++ AL+LG EG Sbjct: 127 RVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEG 186 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +GL + E A + M +LNV+ A+ +AL Sbjct: 187 EGLPSRLLERL-ETARIPMSKTFDSLNVATASDIAL 221 >gi|73662249|ref|YP_301030.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494764|dbj|BAE18085.1| putative rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 156 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 1/149 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G+I R+ + ++ +L ++ E + Sbjct: 1 MTNHIVLFQPQIPGNTGSIARTCAGTYTHLHLIKPLGFSTDDKMLKRAGLDYWESVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 N+ + + + + I G E GL ++ A + Sbjct: 61 YENIESFFENTDGTYYLLTKFGKKTYSDFDFTDTEHDHFFIFGRETTGLPDWVKDAYAET 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN A++ +Y Sbjct: 121 ALRIPMNDNIRSLNLSNTASLLIYEALRQ 149 >gi|196011996|ref|XP_002115861.1| hypothetical protein TRIADDRAFT_59713 [Trichoplax adhaerens] gi|190581637|gb|EDV21713.1| hypothetical protein TRIADDRAFT_59713 [Trichoplax adhaerens] Length = 328 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 89/281 (31%), Gaps = 36/281 (12%) Query: 35 SFNQK--SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 ++ +R+ + + + G++ + A N + + N + Sbjct: 37 KLAKRVLNRNNKKSSIILIDGLNVIKEAFNAGLQLHTFFYSNDNIFDEHFSEYIFDISDE 96 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHN 146 P+ + ++G+A + + D + + + ++ D+V DP N Sbjct: 97 CLCKIPKWYLNSMTSVQTNRGVAALFFKPKTSSFDEISMASDKELLPVTLICDNVRDPGN 156 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G I+RSA A +C +I T + + +SASG+ +P Sbjct: 157 LGNIIRSAAAANCSSVILTHGCADPWQPKVMRSASGSQFQLPIYYDITWGQISCSKALKS 216 Query: 207 FQTIGLSSDSKKPLE---------------------QEIKNDKIALI-LGAEGKGL---- 240 + + + AL+ +G E G Sbjct: 217 MNFYLAECMRDQYQYLQNTRSTSHISNEKKLVPYYDIDWTHKSGALLAIGNEAHGFKLNT 276 Query: 241 RPKTQETAT--SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E + + I++LNV+ AA++ L+ Sbjct: 277 TASVTECCDITQRITIPLCHRIQSLNVATAASIILFEASRQ 317 >gi|89256878|ref|YP_514240.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115315257|ref|YP_763980.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|156503053|ref|YP_001429118.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica FTNF002-00] gi|254368153|ref|ZP_04984173.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica 257] gi|254369752|ref|ZP_04985762.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|290953624|ref|ZP_06558245.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|295313057|ref|ZP_06803751.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|89144709|emb|CAJ80040.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115130156|gb|ABI83343.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134253963|gb|EBA53057.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica 257] gi|156253656|gb|ABU62162.1| RNA methyltransferase, TrmH family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122711|gb|EDO66840.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica FSC022] Length = 155 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 3/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + L P N G I+R + E L ++ H Sbjct: 1 MISIALYEPEIPPNTGNIIRLCANVGAKLHLIELFGFKLEDKQLRRAGLDY--HEFADLK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 A + Q ++ +K+ Q + L+ G E +GL E Sbjct: 59 IYKNFAEFYQQNKDKQIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPADVLELLKQTQ 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SN+ AV LY N+ Sbjct: 119 LKIPMHKNSRSLNLSNSVAVILYGALNNI 147 >gi|114563597|ref|YP_751110.1| RNA methyltransferase [Shewanella frigidimarina NCIMB 400] gi|114334890|gb|ABI72272.1| RNA methyltransferase, TrmH family, group 1 [Shewanella frigidimarina NCIMB 400] Length = 240 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +A++ G E GL + + T + +LN++ A + Y T+ Sbjct: 105 LNGPVAIVFGRENHGLSNEELQKCTYHVAIPANPEYSSLNLAQAVQIICYETR 157 >gi|299537613|ref|ZP_07050906.1| putative tRNA/rRNA methyltransferase in gldA 3'region [Lysinibacillus fusiformis ZC1] gi|298726982|gb|EFI67564.1| putative tRNA/rRNA methyltransferase in gldA 3'region [Lysinibacillus fusiformis ZC1] Length = 157 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ + + ++ +L ++ + + Sbjct: 1 MPLHIVLYQPEIPANTGNIARTCAGTNTSLHLIRPLGFSTDDKMLKRAGLDYWHSVNIVY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQ-ETAT 249 +L D ++ + I SD D+ + G E GL E Sbjct: 61 HDSLEDFIEYSKNGDVYLIETYSDEPFTKNDFSDQDRDIYFMFGKETTGLPKDFAYERRD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +++LN+SN AA+ +Y Sbjct: 121 MCLRIPQSDHVRSLNLSNTAAIVIYEALRQ 150 >gi|93005998|ref|YP_580435.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis K5] gi|92393676|gb|ABE74951.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis K5] Length = 186 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 227 DKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +A++ G+E GL +E A + L M ++LN+SN+ A+ LY Sbjct: 110 NNVAMVFGSETAGLADDIREDIGADNWLRLPMLADSRSLNLSNSVAICLYEVWRQ 164 >gi|54114343|gb|AAV29805.1| NT02FT1078 [synthetic construct] Length = 155 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 3/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + L P N G I+R + E L ++ H Sbjct: 1 MISIALYEPEIPPNTGNIIRLCANVGAKLHLIEPFGFKLEDKQLRRAGLDY--HEFADLK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 A + Q ++ +K+ + + L+ G E +GL E Sbjct: 59 IYKNFAEFYQQNKDKQIWACTTKAKQYYHKVDFSCDDILLFGPETRGLPADVLELLKQTQ 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SN+ AV LY N+ Sbjct: 119 LKIPMHKNSRSLNLSNSVAVILYGALNNI 147 >gi|28872435|ref|NP_795054.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato str. DC3000] gi|28855690|gb|AAO58749.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae pv. tomato str. DC3000] Length = 151 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G ++R C + + L ++ E+ Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 ++L L+K+ + +P A + G E +GL ++ + Sbjct: 61 ADLASCLEKIGNPRLFAFTTKG--SRPFHDASFAPGDAFLFGPESRGLPADILDSLSSEH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AVA+Y Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|71065779|ref|YP_264506.1| tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4] gi|71038764|gb|AAZ19072.1| probable tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4] Length = 186 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 227 DKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +A++ G+E GL +E A + L M ++LN+SN+ A+ LY Sbjct: 110 NNVAMVFGSETAGLADDIREDIGADNWLRLPMLADSRSLNLSNSVAICLYEVWRQ 164 >gi|281358057|ref|ZP_06244541.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] gi|281315430|gb|EFA99459.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] Length = 182 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 2/158 (1%) Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + D V QL +VLD + HN G I R A A II L K+A Sbjct: 15 HIQNNEDFVDVKQLCIVLDRLRSAHNTGNIFRIAEAVGAAEIIACGYTPAPPHPKLEKTA 74 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK--KPLEQEIKNDKIALILGAEGK 238 GA + +P + + A++ + G++ I + + + +A++ G E Sbjct: 75 MGADKMVPCRVMPDSATAVRTLREEGYRMILAAECMPGSRFAWEMKYEFPLAIVFGNEAL 134 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 G+ P+T E + L M G ++NV N+AA LY Sbjct: 135 GVAPETLELVDGLVSLPMFGEKSSINVGNSAAAILYAV 172 >gi|301095550|ref|XP_002896875.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] gi|262108625|gb|EEY66677.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] Length = 486 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L+M V+ N+ + R+ F+ ++ + ++ A + + Sbjct: 319 QRPRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPSLRMTQQDVTFVNVSATAHKWM 378 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRP 242 P + D L++ + ++ K+ L+LG E +G+ Sbjct: 379 PLEEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPV 438 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + G++++LNV + A+ L+ Sbjct: 439 EVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 475 >gi|229917708|ref|YP_002886354.1| tRNA guanosine-2'-O-methyltransferase [Exiguobacterium sp. AT1b] gi|229469137|gb|ACQ70909.1| tRNA guanosine-2'-O-methyltransferase [Exiguobacterium sp. AT1b] Length = 254 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + L+ G E G+ A + M G +++LN+S AAA++LY Sbjct: 149 SKPTVLLFGNEHSGVSETALHKADGNFVIPMQGYVQSLNISVAAAISLYDV 199 >gi|323144225|ref|ZP_08078857.1| putative RNA methyltransferase, TrmH family, group 2 [Succinatimonas hippei YIT 12066] gi|322416000|gb|EFY06702.1| putative RNA methyltransferase, TrmH family, group 2 [Succinatimonas hippei YIT 12066] Length = 156 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I+R + + + ++ H Sbjct: 1 MINIVLYRPQMPQNAGNIIRLSANCGAKLHFVGPLDFFMDDKKMLRAGLDY--HEIANLT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + + I + D+ L+ G E GL + + Sbjct: 59 VHTSFEKFMENMNPKRLIASTIHGTATPSDFSFEDEDFLLFGRETSGLPDEVMQIIPEKF 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M + LN+SNA AV Y Sbjct: 119 RLRIPMVEKSRCLNLSNAVAVMAYEAWRQL 148 >gi|91792812|ref|YP_562463.1| RNA methyltransferase TrmH, group 1 [Shewanella denitrificans OS217] gi|91714814|gb|ABE54740.1| RNA methyltransferase TrmH, group 1 [Shewanella denitrificans OS217] Length = 259 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 22/53 (41%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +A++ G E GL + ++ + +LN++ A + Y + Sbjct: 105 LNGPVAIVFGRENNGLSNEELQSCQFHVAIPANPEYSSLNLAQAVQIICYEAR 157 >gi|157376009|ref|YP_001474609.1| RNA methyltransferase [Shewanella sediminis HAW-EB3] gi|157318383|gb|ABV37481.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sediminis HAW-EB3] Length = 254 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 20/53 (37%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + + +LN++ A + Y + Sbjct: 105 LTGPVAIVFGRENNGLSNEELQKCNYHVAIPANPEYTSLNLAQAVQIICYEAR 157 >gi|113461765|ref|YP_719834.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT] gi|112823808|gb|ABI25897.1| possible tRNA/rRNA methyltransferase [Haemophilus somnus 129PT] Length = 161 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 4/151 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDY--HEFAQIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + T + L++ Q L+ G E +G+ + T Sbjct: 59 KHKTFNEFLNTEQPNRLFALTTKGTPAHSQVNFELGDYLMFGPETRGIPMSILDNLPTTQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M +++N+SNA AV +Y Sbjct: 119 KIRIPMIENSRSMNLSNAVAVTVYEAWRQLN 149 >gi|291451390|ref|ZP_06590780.1| rRNA methyltransferase [Streptomyces albus J1074] gi|291354339|gb|EFE81241.1| rRNA methyltransferase [Streptomyces albus J1074] Length = 286 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 90/249 (36%), Gaps = 8/249 (3%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 ++ + +++ ++ + +Q + GV +S A+ R L Sbjct: 11 PSVQRVTSRNARFQQWEALLGNRKKRNQLREFLVQGVRPISLAVEYGWRVRALLYDDSRK 70 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLL 135 L+ + + P+ + ++ G+++ + + + L+ + L Sbjct: 71 LSGWAREVLGAVEGERVALAPELMAEL-GEKSGGAPEVVAVVEVPADDLERIEAGPEFLG 129 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++ D P NIG+I+RSA AF G+I + + ++ +G+L +P +R+ + Sbjct: 130 VLFDRPTSPGNIGSIIRSADAFGAHGMIVSGHAADVYDPKSVRATTGSLFSLPTVRVPSP 189 Query: 196 TDALQKMHSWGFQTIG-----LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + + + + + + L++G E GL +E Sbjct: 190 AEVMAWVERRRAAGLPLVLVATDEKGDADVYDFDFTQPVLLLVGNETSGLAGAWREVCDV 249 Query: 251 MAHLHMPGI 259 + M G Sbjct: 250 TVSIPMAGA 258 >gi|325971621|ref|YP_004247812.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy] gi|324026859|gb|ADY13618.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy] Length = 166 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 3/149 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ A + L ++ + Sbjct: 1 MALHIVLFEPEIPQNTGNIARTCAAVGATLHLVHPLGFSLSEKHLRRAGLDYWPLLTLCE 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250 +N+ + QK + ++ L+ G E G+ E + Sbjct: 61 YANVDEFFQKKSGENLYFFTTKAKHSYTE--LTYPEETYLVFGKESAGIPESILVEHQKT 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN+ A+A Y Sbjct: 119 CVRIPMRSQARSLNLSNSVAIATYEYLRQ 147 >gi|126698145|ref|YP_001087042.1| putative RNA methylase [Clostridium difficile 630] gi|254974166|ref|ZP_05270638.1| putative RNA methylase [Clostridium difficile QCD-66c26] gi|255091567|ref|ZP_05321045.1| putative RNA methylase [Clostridium difficile CIP 107932] gi|255099672|ref|ZP_05328649.1| putative RNA methylase [Clostridium difficile QCD-63q42] gi|255305555|ref|ZP_05349727.1| putative RNA methylase [Clostridium difficile ATCC 43255] gi|255313293|ref|ZP_05354876.1| putative RNA methylase [Clostridium difficile QCD-76w55] gi|255515984|ref|ZP_05383660.1| putative RNA methylase [Clostridium difficile QCD-97b34] gi|255649075|ref|ZP_05395977.1| putative RNA methylase [Clostridium difficile QCD-37x79] gi|260682266|ref|YP_003213551.1| putative RNA methylase [Clostridium difficile CD196] gi|260685865|ref|YP_003216998.1| putative RNA methylase [Clostridium difficile R20291] gi|306519189|ref|ZP_07405536.1| putative RNA methylase [Clostridium difficile QCD-32g58] gi|115249582|emb|CAJ67399.1| putative tRNA/rRNA methyltransferase [Clostridium difficile] gi|260208429|emb|CBA60985.1| putative RNA methylase [Clostridium difficile CD196] gi|260211881|emb|CBE02320.1| putative RNA methylase [Clostridium difficile R20291] Length = 156 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 48/152 (31%), Gaps = 5/152 (3%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I+R+ A + + L + + Sbjct: 1 MSLNIVLVEPEIPQNTGNIIRTCAATGSTLHLVKPLGFSLDDKHLKRCGLDYWDIADIQY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATS 250 + + +K + + + + ++ G E KGL + + Sbjct: 61 YDSFEELQEKYPNSKYFFSTTKAKQSHSD--VKYEENCFIVFGKETKGLPEPLLKANMDT 118 Query: 251 MAHLHM--PGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SN+ A+ +Y Sbjct: 119 CIRVPMLDVEKARSLNLSNSVAIVVYEALRQI 150 >gi|167009227|ref|ZP_02274158.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica FSC200] Length = 161 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 3/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + + + L P N G I+R + E L ++ H Sbjct: 6 NMISIALYEPEIPPNTGNIIRLCANVGAKLHLIELFGFKLEDKQLRRAGLDY--HEFADL 63 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 A + Q ++ +K+ Q + L+ G E +GL E Sbjct: 64 KIYKNFAEFYQQNKDKQIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPADVLELLKQT 123 Query: 252 -AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SN+ AV LY N+ Sbjct: 124 QLKIPMHKNSRSLNLSNSVAVILYGALNNI 153 >gi|167771109|ref|ZP_02443162.1| hypothetical protein ANACOL_02463 [Anaerotruncus colihominis DSM 17241] gi|167666779|gb|EDS10909.1| hypothetical protein ANACOL_02463 [Anaerotruncus colihominis DSM 17241] Length = 171 Score = 75.6 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 1/95 (1%) Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + + I+ D+ ++ +++ + D ++ G E GL + Sbjct: 53 YWHLLDITTYPDSASFFAQNRGPFYFFTTKARRTYTEPQYPDGAYIVFGREDAGLPEELL 112 Query: 246 -ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L M ++LN+SN AVA+Y Sbjct: 113 FQNPDCCVRLPMIAGARSLNLSNTVAVAVYEVLRQ 147 >gi|309806115|ref|ZP_07700134.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 03V1-b] gi|308167470|gb|EFO69630.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 03V1-b] Length = 114 Score = 75.6 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 23/44 (52%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 LI+G E G+ + Q ++ + G ++LN + AA + +Y Sbjct: 68 LIIGNEAHGVSRQVQLECDHKIYIPIKGKAESLNAAVAAGIMIY 111 >gi|302392645|ref|YP_003828465.1| RNA methyltransferase, TrmH family, group 2 [Acetohalobium arabaticum DSM 5501] gi|302204722|gb|ADL13400.1| RNA methyltransferase, TrmH family, group 2 [Acetohalobium arabaticum DSM 5501] Length = 152 Score = 75.6 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 3/145 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ + ++ + ++ + + + Sbjct: 3 IVLYQPEIPPNTGNIARTCACTGASLHLIRPLGFSTDEKAVRRAGLDYWDKVDVNYYDSF 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHL 254 + +K F + K + L+ G E GL + E + Sbjct: 63 RELEEKYSDHNFYFATKFA--SKFYTEIEYKSDDFLVFGQETAGLPEEITERYKENCIRI 120 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 M ++ALN++N+ ++ LY Sbjct: 121 PMLKEVRALNLANSVSIILYEALRQ 145 >gi|239979522|ref|ZP_04702046.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces albus J1074] Length = 277 Score = 75.6 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 90/249 (36%), Gaps = 8/249 (3%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 ++ + +++ ++ + +Q + GV +S A+ R L Sbjct: 2 PSVQRVTSRNARFQQWEALLGNRKKRNQLREFLVQGVRPISLAVEYGWRVRALLYDDSRK 61 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLL 135 L+ + + P+ + ++ G+++ + + + L+ + L Sbjct: 62 LSGWAREVLGAVEGERVALAPELMAEL-GEKSGGAPEVVAVVEVPADDLERIEAGPEFLG 120 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++ D P NIG+I+RSA AF G+I + + ++ +G+L +P +R+ + Sbjct: 121 VLFDRPTSPGNIGSIIRSADAFGAHGMIVSGHAADVYDPKSVRATTGSLFSLPTVRVPSP 180 Query: 196 TDALQKMHSWGFQTIG-----LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 + + + + + + L++G E GL +E Sbjct: 181 AEVMAWVERRRAAGLPLVLVATDEKGDADVYDFDFTQPVLLLVGNETSGLAGAWREVCDV 240 Query: 251 MAHLHMPGI 259 + M G Sbjct: 241 TVSIPMAGA 249 >gi|116074887|ref|ZP_01472148.1| putative tRNA/rRNA methyltransferase (SpoU family) protein [Synechococcus sp. RS9916] gi|116068109|gb|EAU73862.1| putative tRNA/rRNA methyltransferase (SpoU family) protein [Synechococcus sp. RS9916] Length = 158 Score = 75.6 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 3/153 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 S L + L P N G I RS AF + + + ++ H+ Sbjct: 4 PESPLRIALFEPRIPPNTGNIARSCAAFQLPLSLIEPLGFSIDDRAVKRAGLDYWPHVDL 63 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + L ++ + L L+ G E GL +E Sbjct: 64 ATHPDFEHFLAELPVPHRLIGCS-RHQGQSLSTFQFQPGDVLLFGREDTGLPNPVRERCD 122 Query: 250 SMAHLHMPG--IIKALNVSNAAAVALYITQNHF 280 ++ + M G +++LN+S + A+ + Sbjct: 123 AICTIPMRGHENVRSLNLSVSCALVSFQAGLQL 155 >gi|257869740|ref|ZP_05649393.1| RNA methyltransferase TrmH [Enterococcus gallinarum EG2] gi|257803904|gb|EEV32726.1| RNA methyltransferase TrmH [Enterococcus gallinarum EG2] Length = 167 Score = 75.6 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I R+ A + + ++ L ++ + Sbjct: 1 MNHIVLFEPQIPANTGNIARTCAATNTHLHLIEPLGFSTDDKHLKRAGLDYWHDVHITYH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251 +L + + I ++ ++ + G E GL +E A Sbjct: 61 KDLAAFMSFLGDRPLYLISKFANRVYSEVDYTTHEDQFFLFGKETTGLPETFMREHADKC 120 Query: 252 AHLHMPG-IIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 121 LRIPMNDAHVRSLNLSNTAALIIYEALRQ 149 >gi|83644213|ref|YP_432648.1| rRNA methylase (SpoU class) [Hahella chejuensis KCTC 2396] gi|83632256|gb|ABC28223.1| predicted rRNA methylase (SpoU class) [Hahella chejuensis KCTC 2396] Length = 154 Score = 75.6 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L ++ E+ P R Sbjct: 1 MLNIVLFQPEIPPNTGNIIRLCANCGFTLHLIEPLGFTWDDKRLQRAGLDYHEYAPVKRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + L ++ + K + AL+ G E +GL + + + S Sbjct: 61 GDFQQFLDEVRPNKVYALSTRG--KSYYHEVSFAAGDALVFGPETRGLPQQMLDELGSES 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SN A+ Y Sbjct: 119 CLRVPMRQDSRSLNLSNTVALVSYEAWRQL 148 >gi|258596931|ref|XP_001349687.2| apicoplast RNA methyltransferase precursor, putative [Plasmodium falciparum 3D7] gi|254688488|gb|AAC71960.3| apicoplast RNA methyltransferase precursor, putative [Plasmodium falciparum 3D7] Length = 354 Score = 75.6 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 54/312 (17%), Positives = 102/312 (32%), Gaps = 56/312 (17%) Query: 7 KKSEKIFSLKDSHYAK------LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 K ++K S +HY + +RRN+ K+ + + ++YG+++V A Sbjct: 48 KNNDKRNSYLYTHYTRNNSSINIRRNNFLDKQNDNIS-----------DYIYGLNSVYAV 96 Query: 61 LNNPSRKIFQLLATKNAL---------ARLDWDANLPHPFPVKTVPPQTIDKIVG----- 106 L R I +++ KN +D ++ + ++++VG Sbjct: 97 LKKNERTIEEVIVNKNIKLNRKIHKQNYEYIFDELKKRNVSIQYMEKYKMNELVGGFPHN 156 Query: 107 --KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 H + + + + L V D NIG + RS F I Sbjct: 157 DIIMKTHYRYMNNYKDFIKNIKHLPNKNNIFICLHDVYDNMNIGNVCRSIFFFGGHTIFL 216 Query: 165 TKRYSPSESAVLAKSAS----------------GALEHIPYIRISNLTDALQKMHSWGFQ 208 K+ +E K + ++ L S Sbjct: 217 KKKKKVNEKKNNVKIDTPILHSSVGSSEFLNFYHINNMANFMNHMKLNGFTIYSTSCHKN 276 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-------HMPGIIK 261 + +N+KI +ILG E KGL+ E + ++ + I Sbjct: 277 NTSCHKYINLNNIKIRENEKILIILGNESKGLKEDILENSDYCVYINNLSYNENTQFHID 336 Query: 262 ALNVSNAAAVAL 273 +LNV+N ++ L Sbjct: 337 SLNVNNVCSIML 348 >gi|225569887|ref|ZP_03778912.1| hypothetical protein CLOHYLEM_05981 [Clostridium hylemonae DSM 15053] gi|225161357|gb|EEG73976.1| hypothetical protein CLOHYLEM_05981 [Clostridium hylemonae DSM 15053] Length = 163 Score = 75.6 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 1/71 (1%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268 ++ + ++ G E G+ + + + M G I++LN+ N+ Sbjct: 76 YMATTKAPNVYTDVRYEPDCYIMFGKESAGIPEEILVKHKEDSIRIPMAGDIRSLNLGNS 135 Query: 269 AAVALYITQNH 279 A+ LY Sbjct: 136 VAIILYEALRQ 146 >gi|298372824|ref|ZP_06982814.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274 str. F0058] gi|298275728|gb|EFI17279.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274 str. F0058] Length = 182 Score = 75.6 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 6/157 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + L+++LD+V HNIGA+LR+A AF + ++ + + + KSA GA + Sbjct: 21 MAKIPLVLILDNVRSMHNIGAVLRTADAFCIEKVVLCGITATPPNNEIHKSALGAEFSVR 80 Query: 189 YIRISNLTDALQKMHSWGFQT---IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + ++ + G++ K AL+ G E G+ T Sbjct: 81 WEYSPEAQIPVRTLRDEGYRVLAVEQTQDSMPLDSLHIEGAAKYALVFGNEVSGVEQATI 140 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVA---LYITQNH 279 + + G +LNVS A + + + Sbjct: 141 DLCDGSVEIPQYGTKHSLNVSVACGIVVWTFFEKLRN 177 >gi|154505239|ref|ZP_02041977.1| hypothetical protein RUMGNA_02753 [Ruminococcus gnavus ATCC 29149] gi|153794437|gb|EDN76857.1| hypothetical protein RUMGNA_02753 [Ruminococcus gnavus ATCC 29149] Length = 166 Score = 75.6 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 1/73 (1%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268 ++ + K + ++ G E G+ + + M G I++LN+ N+ Sbjct: 76 YMATTKAPKVYTEVQYEPDCYIMFGKESAGIPEEILVNHKEDCVRIPMVGDIRSLNLGNS 135 Query: 269 AAVALYITQNHFA 281 A+ LY Sbjct: 136 VAIILYEALRQQN 148 >gi|260887246|ref|ZP_05898509.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC 35185] gi|330838996|ref|YP_004413576.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC 35185] gi|260863308|gb|EEX77808.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC 35185] gi|329746760|gb|AEC00117.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC 35185] Length = 160 Score = 75.3 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 1/97 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + G Q S + + + + L+ G E G+ Sbjct: 50 YWHLVKVHYHENFSEVLRLFAGRQFYYCSKKAPRSYDAVSYTEDDFLVFGKETAGIPEAL 109 Query: 245 QE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E + M ++LN+S+AAA+ Y Sbjct: 110 LEEHWEDCIRIPMRLGARSLNLSSAAAIVAYEAMRQI 146 >gi|257455437|ref|ZP_05620672.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60] gi|257447399|gb|EEV22407.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60] Length = 174 Score = 75.3 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 228 KIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 IAL+ G+E GL + + L M ++LN+SN+ A+ L+ Sbjct: 99 NIALVFGSETAGLPEPIRAAIGQDNWLRLPMLPTSRSLNLSNSVAITLFEVWRQ 152 >gi|306819661|ref|ZP_07453324.1| TrmH family RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552306|gb|EFM40234.1| TrmH family RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 154 Score = 75.3 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 5/147 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I+R+ V + + + ++ + H I Sbjct: 3 IVLFEPEIPQNTGNIIRTCVCTGTTLHMIRPFGFSMDEKQIKRAGMDYISHADIIYYDCF 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254 + +K ++ LI G E +GL K ++ + + Sbjct: 63 EEYFEKYDKDDMFFFTTKAEKSYSD--VKYTKNSHLIFGPESRGLPEKIRKINIQNDVRI 120 Query: 255 HMPGI--IKALNVSNAAAVALYITQNH 279 M +++LN+SN+ A+ L+ Sbjct: 121 PMKANEYVRSLNLSNSVAIGLFEALRQ 147 >gi|153000909|ref|YP_001366590.1| RNA methyltransferase [Shewanella baltica OS185] gi|160875617|ref|YP_001554933.1| RNA methyltransferase [Shewanella baltica OS195] gi|217973134|ref|YP_002357885.1| TrmH family RNA methyltransferase [Shewanella baltica OS223] gi|304408987|ref|ZP_07390608.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS183] gi|307302990|ref|ZP_07582745.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica BA175] gi|151365527|gb|ABS08527.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS185] gi|160861139|gb|ABX49673.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS195] gi|217498269|gb|ACK46462.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS223] gi|304352808|gb|EFM17205.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS183] gi|306913350|gb|EFN43772.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica BA175] gi|315267805|gb|ADT94658.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS678] Length = 242 Score = 75.3 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 22/53 (41%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + T + +LN++ A + Y T+ Sbjct: 105 LKGPVAIVFGRENHGLSNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETR 157 >gi|320093674|ref|ZP_08025549.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979373|gb|EFW10860.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 153 Score = 75.3 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 5/150 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +V P N GA +R + + + A L ++ + + Sbjct: 1 MLHIVFWEPEIPGNTGAAIRLSACTGSVLHLVRPLGFDMDDAKLRRAGLD---YHDLAHV 57 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + L+ +++ D L+LG E GL + Sbjct: 58 RVHDSLDGALAGIPGRVWALTGRAERAYTDVAYGDGDGLLLGRESVGLSEEAMSHPGVAG 117 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++LN++N+AA+ LY Sbjct: 118 RVRITMVPGVRSLNLANSAAIVLYEAWRQL 147 >gi|238921657|ref|YP_002935172.1| hypothetical protein NT01EI_3813 [Edwardsiella ictaluri 93-146] gi|238871226|gb|ACR70937.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 157 Score = 75.3 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L ++ H Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIEPLGFIWDDKRLRRAGLDY--HEFASIR 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + L++ D L+ G E +GL ++ Sbjct: 59 RHHDYSSFLSGEKPTRLFALTTKGTPAHSDVTYRDGDYLLFGPETRGLPSTILDSLPTAQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y Sbjct: 119 KIRIPMLASSRSMNLSNAVSVVVYEAWRQL 148 >gi|154250971|ref|YP_001411795.1| tRNA/rRNA methyltransferase SpoU [Parvibaculum lavamentivorans DS-1] gi|154154921|gb|ABS62138.1| tRNA/rRNA methyltransferase (SpoU) [Parvibaculum lavamentivorans DS-1] Length = 256 Score = 75.3 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 89/255 (34%), Gaps = 17/255 (6%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + K+ S + +R + L G TV AL + +LA A A Sbjct: 13 QNAQAKRWLSLTE-TRGIKKHGAFLLSGRKTVPEALKRHGVRFTAVLA---AKAEDAEAL 68 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 LP V + + LA E D + + L +L + DP Sbjct: 69 PLPAGIARYAVGRALFEMLDTNGTGFPLLAGEV--PEMAAADFSKPPKGLELLCALGDPA 126 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N+GA+LRSA AF ++ + + + + A + ++R + Sbjct: 127 NLGALLRSAAAFGVSRVVLMEGAAHPFHPKALRGGANAQFEMSFLRGGGWSALEGAKGPL 186 Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + + L+LG EG G+ P T + G +++LN Sbjct: 187 VALDGAGADMTAYD-----WPRDLRLVLGEEGLGVPPALAAT---RLAIATTGRVESLNA 238 Query: 266 SNAAAVAL---YITQ 277 + AA++AL Y + Sbjct: 239 TVAASLALQAWYEAR 253 >gi|332798848|ref|YP_004460347.1| TrmH family RNA methyltransferase [Tepidanaerobacter sp. Re1] gi|332696583|gb|AEE91040.1| RNA methyltransferase, TrmH family, group 2 [Tepidanaerobacter sp. Re1] Length = 167 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 1/73 (1%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHLHMPGIIKALNVS 266 L++ +K+ L+ G E GL P + + M ++LN+S Sbjct: 81 CKYFLTTKAKQCYADVSYEPDCYLVFGKETAGLPVPLLKANRERCIRIPMTDEARSLNLS 140 Query: 267 NAAAVALYITQNH 279 N+ A+ +Y Sbjct: 141 NSVAIVVYEALRQ 153 >gi|225450191|ref|XP_002263230.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 218 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 9/164 (5%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + N L +VL P N G I R+ A + + + A L ++ + Sbjct: 30 EISNNRLLQVVLVSPQIPGNTGTIARTCAASAVGLHLIEPLGFQVDDAKLKRAGLDYWPY 89 Query: 187 IPYIRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + + + + + LI G+E GL P+ Sbjct: 90 VVVKVHDSWAEFREYFRQQEGEKRLLAFTKRGTNIHSDFSYRKGDWLIFGSETCGLPPEA 149 Query: 245 QETATS------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 S + M ++ LN+S + +ALY Sbjct: 150 LLDCKSEALGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLN 193 >gi|297736221|emb|CBI24859.3| unnamed protein product [Vitis vinifera] Length = 250 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 9/164 (5%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + N L +VL P N G I R+ A + + + A L ++ + Sbjct: 62 EISNNRLLQVVLVSPQIPGNTGTIARTCAASAVGLHLIEPLGFQVDDAKLKRAGLDYWPY 121 Query: 187 IPYIRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + + + + + LI G+E GL P+ Sbjct: 122 VVVKVHDSWAEFREYFRQQEGEKRLLAFTKRGTNIHSDFSYRKGDWLIFGSETCGLPPEA 181 Query: 245 QETATS------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 S + M ++ LN+S + +ALY Sbjct: 182 LLDCKSEALGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLN 225 >gi|302877470|ref|YP_003846034.1| RNA methyltransferase, TrmH family, group 2 [Gallionella capsiferriformans ES-2] gi|302580259|gb|ADL54270.1| RNA methyltransferase, TrmH family, group 2 [Gallionella capsiferriformans ES-2] Length = 158 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 46/149 (30%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G I+R C + E L ++ H Sbjct: 1 MFHVILYQPEIPPNTGNIIRLCANTGCQLHLIKPLGFTLEDKQLIRAGLDY--HEFANLR 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250 + L++ +P + A + G E +GL + T Sbjct: 59 VYDHLEACLSAFDAGRIFALTTKGSQPFHEIRYQPGDAFLFGPESRGLPAEVLNQLTTTQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AVA++ Sbjct: 119 RVRLPMLPDNRSLNLSNTVAVAVFEAWRQ 147 >gi|227822223|ref|YP_002826194.1| putative aminotransferase/methyltransferase [Sinorhizobium fredii NGR234] gi|227341223|gb|ACP25441.1| putative aminotransferase/methyltransferase [Sinorhizobium fredii NGR234] Length = 153 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 52/149 (34%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++L + L + P N G ILR A I L ++ + + Sbjct: 1 MNELRIALYQPDIPGNTGTILRLAACLGLAVDIIEPAGFDLSDRNLKRAGMDYIAAVTLT 60 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R N G + + S+ + +P + L+ G E G+ + A + Sbjct: 61 RHVNWERFETWRAESGRRLVLASTKAAEPYTRFEFRADDILLFGRESAGVPDHVHDRADA 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ A+A+ + Sbjct: 121 RILIPMAPGQRSLNIAMASAMIVGEAIRQ 149 >gi|57504963|ref|ZP_00370915.1| rRNA methylase [Campylobacter coli RM2228] gi|305432038|ref|ZP_07401205.1| TrmH family RNA methyltransferase [Campylobacter coli JV20] gi|57019235|gb|EAL55941.1| rRNA methylase [Campylobacter coli RM2228] gi|304445122|gb|EFM37768.1| TrmH family RNA methyltransferase [Campylobacter coli JV20] Length = 155 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G+I R I + ++ E + + Sbjct: 1 MFNIVLIHPRIPQNTGSIGRMCFNAGFKLHIVKPIVFDISQKAVRRAGLDYWEKLEPVIW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSM 251 +L L+ + + ++ S K Q + L G+E GL + + + Sbjct: 61 ESLDIFLEHNLIYKDRFFFATTKSNKFYFQAKFQENDFLFFGSESYGLPMELMQLNWDNA 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ + + Y Sbjct: 121 ITIPMKACGRSLNLATSVGIVSYEALRQ 148 >gi|301095558|ref|XP_002896879.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] gi|262108629|gb|EEY66681.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] Length = 199 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 55/151 (36%), Gaps = 5/151 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L+M V+ N+ + R+ F+ ++ + ++ A + +P + Sbjct: 38 LIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWMPLEEVR 97 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRPKTQETA 248 D L++ + ++ K+ L+LG E +G+ + + Sbjct: 98 PQGDDLRRALVRWKREDYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEVLQLV 157 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G++++LNV + A+ L+ Sbjct: 158 DVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 188 >gi|225017056|ref|ZP_03706248.1| hypothetical protein CLOSTMETH_00981 [Clostridium methylpentosum DSM 5476] gi|224950223|gb|EEG31432.1| hypothetical protein CLOSTMETH_00981 [Clostridium methylpentosum DSM 5476] Length = 172 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 46/147 (31%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P N G I R+ A + + L ++ ++ Sbjct: 4 LNIVLVEPQIPQNTGNIARTCAATGARLHLVKPLGFAIDDKKLKRAGLDYWHYLDITYYD 63 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMA 252 L D + F + D ++ G E GL + Sbjct: 64 GLKDFFAQNSGGNFYYFTTKGQANYSE--VAYPDNAYIVFGREDAGLPEDLLFHNPETCV 121 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 L M G I++LN+SN AVA Y Sbjct: 122 RLPMRGGIRSLNLSNTVAVATYEVLRQ 148 >gi|149200214|ref|ZP_01877236.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155] gi|149136656|gb|EDM25087.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155] Length = 151 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 3/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R V D + + + K+ H+ + Sbjct: 3 IVLFQPLIPQNTGTIGRLTVCTDNDLHLIKPLGFELDEKKIKKAGMDYWPHVKLHIHESW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHL 254 D L + K E + LI G E GL P+ E S+ + Sbjct: 63 EDFLNNTPEDKTMVFCTTKCKKTIYEHT-FTEDDYLIFGNESHGLPPEFYENFQDSLCTI 121 Query: 255 HMPGI-IKALNVSNAAAVALYITQNHFA 281 M G +++ N++N+ ++ Y + Sbjct: 122 PMRGDHLRSHNLANSVSIVTYEAIRQIS 149 >gi|152980476|ref|YP_001354860.1| RNA methyltransferase [Janthinobacterium sp. Marseille] gi|151280553|gb|ABR88963.1| RNA methyltransferase, TrmH family, group 2 [Janthinobacterium sp. Marseille] Length = 165 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 6/152 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +VL P N G I+R + P + A + ++ ++ + Sbjct: 7 FHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHDYAQMKVHA 66 Query: 194 NLT----DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA- 248 + + + L++ P + G+E KGL +E+ Sbjct: 67 DWQAFLNSFPAEQPLNHERMFALTTHGSTPFASMAFQPGDVFVFGSETKGLETSLRESFP 126 Query: 249 -TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L M ++LN+SN AV +Y Sbjct: 127 PSQRIRLPMRPDNRSLNLSNTVAVVVYEAWRQ 158 >gi|109019959|ref|XP_001102931.1| PREDICTED: probable methyltransferase TARBP1-like [Macaca mulatta] Length = 1623 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 68/220 (30%), Gaps = 9/220 (4%) Query: 69 FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 FQ ++ L++L V + + L L Sbjct: 1394 FQWYLSQTQLSKLKPGDWSQQDIGTNLVEADNQAEWTDVQKKIIPWNNRVPDLDLELLFQ 1453 Query: 129 VR-------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 R S+L++V ++ P N+G + R+ F ++ S+ S S Sbjct: 1454 DRAARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASALVVGSLQCISDKQFQHLSVS 1513 Query: 182 GALEH--IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 + + QK + L Q +K L+LG E +G Sbjct: 1514 AEQWLPLVQVKPPHLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREG 1573 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + GII++LNV + A+ ++ Sbjct: 1574 IPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1613 >gi|284031554|ref|YP_003381485.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836] gi|283810847|gb|ADB32686.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836] Length = 175 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 50/148 (33%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 LL+ N+G +LR+ A + + P A A H Sbjct: 22 SHTCWDHLLVAPLWPMHDVNLGTLLRTCDATGACLAVPKLPWVPEALARGNTLRRRACVH 81 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +K I L+ ++ + + + +LG E G+ P+ + Sbjct: 82 WTGHNPVQWLADQRKRDDTTVLGIELAEEAVRLADLPPARHRTVAVLGHERTGIPPEALD 141 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 + + M G +LNV+ A ++ LY Sbjct: 142 ELDLVVEIPMIGTGASLNVAVAGSLVLY 169 >gi|163749697|ref|ZP_02156943.1| RNA methyltransferase, TrmH family, group 1 [Shewanella benthica KT99] gi|161330510|gb|EDQ01468.1| RNA methyltransferase, TrmH family, group 1 [Shewanella benthica KT99] Length = 254 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 20/53 (37%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + + +LN++ A + Y + Sbjct: 105 LEGPVAIVFGRENNGLTNEELQKCDYHVAIPANPEYTSLNLAQAVQIICYEAR 157 >gi|309357472|emb|CAP35827.2| hypothetical protein CBG_18354 [Caenorhabditis briggsae AF16] Length = 645 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 89/269 (33%), Gaps = 25/269 (9%) Query: 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK------- 75 R+ K ++ + K + + L+G+H+V A+ + R+ + K Sbjct: 17 FRKAKLAKKSVEKYKAKKIEIPELKGEALFGLHSVLEAMRSGKREFHSVYLKKTLEKRAE 76 Query: 76 -NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134 + + + + + +D++ + +H G+ ++ + L + S Sbjct: 77 SDDRIKEVLEKIKNMGIRKELLTDDQLDRLTEYQ-LHNGICMDASALKFSSFQPKNVSIF 135 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 + D V DP N+GAI RSA F DG+ K P +S ++ Sbjct: 136 V---DKVLDPGNLGAIGRSAWFFGADGVGLVKGRGPKSVTPSMIKSSCGALEHLPVQQFE 192 Query: 195 LTDALQKMHS--------WGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQ 245 + + + K K ++LG EG G+ Sbjct: 193 GFHEFRDQIKSNGGEIVATCDPLAAKKAGITAKSLDQWKPHKTVGIVLGDEGVGISRGIL 252 Query: 246 ETATSMAHL----HMPGIIKALNVSNAAA 270 ++ + + +LNVS A Sbjct: 253 NLCDTVISIAPVGEHQSNVTSLNVSVVAG 281 >gi|210613769|ref|ZP_03289883.1| hypothetical protein CLONEX_02090 [Clostridium nexile DSM 1787] gi|210150978|gb|EEA81986.1| hypothetical protein CLONEX_02090 [Clostridium nexile DSM 1787] Length = 164 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 1/99 (1%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G + + + G + ++ + ++ G E G+ Sbjct: 48 GMDYWDDLDVTTYIDFQDFMEKNPGAKIYMATTKAPNVYTDVNYEPDCYIMFGKESAGIP 107 Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M G I++LN+ N+ A+ LY Sbjct: 108 EEILIHHKEDSIRIPMVGDIRSLNLGNSVAIVLYEALRQ 146 >gi|317495249|ref|ZP_07953619.1| RNA methyltransferase [Gemella moribillum M424] gi|316914671|gb|EFV36147.1| RNA methyltransferase [Gemella moribillum M424] Length = 157 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 3/149 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ V + + + + ++ EH+ I + Sbjct: 4 IVLFQPEIPANTGNIARTCVGTNTRLHLIRPLGFSIDDKHVKRAGLDYWEHLDLIVWDSF 63 Query: 196 TDALQKMHSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252 + L+ + T +++I I G E KGL + +E + Sbjct: 64 DEFLEATSDKNYYLITKFGQKIYSDFDFSNKNDEEIYFIFGRETKGLPKEFREKYSEQAL 123 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M +++LN+SN AA+ +Y Sbjct: 124 RIPMSENVRSLNLSNTAALIIYEALRQQN 152 >gi|332292582|ref|YP_004431191.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] gi|332170668|gb|AEE19923.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] Length = 150 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 4/151 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL + P+N G I R A+ C + + L ++ +H+ Sbjct: 1 MLNIVLINPEIPNNTGNIGRLALGSGCKLHLVKPFGFEIDDTRLKRAGLDYWQHLDVQYY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSM 251 N D K + + LSS K + + L+ G E KGL + E + Sbjct: 61 DNTEDFFNK--NAFAKMAFLSSHGTKSHYDIPFEEDLFLVFGKESKGLPKEITEKHPDQL 118 Query: 252 AHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 + + I++LN++NA + Y Sbjct: 119 YKIPLFSEHIRSLNLANAVGIVAYEGIRQLN 149 >gi|227495210|ref|ZP_03925526.1| SpoU family rRNA methyltransferase [Actinomyces coleocanis DSM 15436] gi|226831662|gb|EEH64045.1| SpoU family rRNA methyltransferase [Actinomyces coleocanis DSM 15436] Length = 153 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 44/150 (29%), Gaps = 5/150 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L ++ N GA +R + + E + L ++ + + Sbjct: 1 MLHIIYFEPEIAGNSGAAIRLSACTGSMLHLVEPFGFDMEDSKLRRAGLD---YHDLAHV 57 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 D + + D AL+ G E GL + Sbjct: 58 QTHPDLEDAFAGIEGNIYAFTGHATTFYGDISYQDGDALLFGKESTGLPQWVLDHPQVKL 117 Query: 253 --HLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN++N+A++ LY Sbjct: 118 AARIPMLPERRSLNLTNSASIVLYEAWRQL 147 >gi|120598674|ref|YP_963248.1| RNA methyltransferase [Shewanella sp. W3-18-1] gi|146293248|ref|YP_001183672.1| RNA methyltransferase [Shewanella putrefaciens CN-32] gi|120558767|gb|ABM24694.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. W3-18-1] gi|145564938|gb|ABP75873.1| RNA methyltransferase, TrmH family, group 1 [Shewanella putrefaciens CN-32] gi|319426238|gb|ADV54312.1| RNA methyltransferase, TrmH family, group 1 [Shewanella putrefaciens 200] Length = 241 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + T + +LN++ A + Y T+ Sbjct: 106 TGPVAIVFGRENHGLSNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETR 157 >gi|304373121|ref|YP_003856330.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis HUB-1] gi|304309312|gb|ADM21792.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis HUB-1] Length = 256 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 89/233 (38%), Gaps = 10/233 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + + + AL +K+ ++ T + + + + KI Sbjct: 28 NAFLVENIKDLELALE--YKKVIKIYTTN-----ANLQIKSFKNEQIILISHSIMKKITS 80 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 E+ + +AL L L+ + +++L+++ DP N+G I+R+ AF I + Sbjct: 81 YESASEVVAL-CNKLDVVKLENFLQHKRIVILENIQDPGNLGTIIRNCSAFDFALIYSGV 139 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + S+ +K A + +S + D L + + T +K Sbjct: 140 DFYNSKVISASKGAIFKTPILKVENLSQILDKLHQNNFVSIGTFLSKKAAKIKDFVIENE 199 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K A+I G E G+ ++ ++ + ++LN++NA A+ LY Sbjct: 200 QKYAIIFGNESSGISAALEKIIQKQIYIPIA--FESLNIANATAILLYEFSTQ 250 >gi|242037305|ref|XP_002466047.1| hypothetical protein SORBIDRAFT_01g050660 [Sorghum bicolor] gi|241919901|gb|EER93045.1| hypothetical protein SORBIDRAFT_01g050660 [Sorghum bicolor] Length = 1767 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + D+ L+LG E +G+ + + G++++LNV + A+A++ Sbjct: 1704 FVFPDRTVLVLGREKEGIPVDIIHILDACVEIPQLGVVRSLNVHVSGAIAVWEYTRQL 1761 >gi|209696205|ref|YP_002264135.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida LFI1238] gi|208010158|emb|CAQ80483.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida LFI1238] Length = 159 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 46/152 (30%), Gaps = 5/152 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL---EHIPY 189 + L N G I+R + + + E L ++ + Sbjct: 1 MFEIALYEPEIAPNTGNIIRLSANCGANLHLIEPLGFDLEEKKLRRAGLDYHDLAHVKRH 60 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--T 247 + D L+ + ++ + L+ G E +GL + E Sbjct: 61 KDYAAFLDYLENESEGEHRIFACTTKTTGHHTTPSYQKGDVLLFGPETRGLPAELIEGLP 120 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN+ A+ ++ Sbjct: 121 MEQRVRIPMMADSRSLNLSNSVAIIVFEAWRQ 152 >gi|91787138|ref|YP_548090.1| RNA methyltransferase TrmH [Polaromonas sp. JS666] gi|91696363|gb|ABE43192.1| RNA methyltransferase TrmH, group 2 [Polaromonas sp. JS666] Length = 183 Score = 75.3 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 2/162 (1%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 +S ++ +VL P N G ++R A C + + + ++ Sbjct: 7 HCVSYPASNDNSAMFNIVLVEPEIPPNTGNVIRLAANTGCRLHLVEPLGFSMDDKHMRRA 66 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 E+ +R ++ L + +++ + L+ GAE +G Sbjct: 67 GLDYHEYAQVLRHASWQALLDSQRPPAGRLFAMTTHGAGSVYDMRFLPGDWLVFGAETRG 126 Query: 240 LRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L P +E+ + M ++LN+SN AV ++ Sbjct: 127 LAPDVRESFPMAQRLRVPMQPGQRSLNLSNTVAVTVFEAWRQ 168 >gi|229015864|ref|ZP_04172832.1| Uncharacterized tRNA/rRNA methyltransferase in gldA 3'region [Bacillus cereus AH1273] gi|228745426|gb|EEL95460.1| Uncharacterized tRNA/rRNA methyltransferase in gldA 3'region [Bacillus cereus AH1273] Length = 61 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%) Query: 232 ILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + G E GL E + M +++LN+SN AA+ +Y Sbjct: 1 MFGRETNGLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQN 51 >gi|197106334|ref|YP_002131711.1| rRNA methylase family protein [Phenylobacterium zucineum HLK1] gi|196479754|gb|ACG79282.1| rRNA methylase family protein [Phenylobacterium zucineum HLK1] Length = 154 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 37/111 (33%) Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 A A+++ + + + + ++ + +P + Sbjct: 33 PCGFPLSDRAVARAAMDYAARADVVRHAGWGDFRAASQGRLVLFTTRAAQPFQDFDFRPG 92 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E G+ + A + + + ++LNV AAA+AL Sbjct: 93 DVLLFGRESAGVPDEVHAAADARLFIPLVAGARSLNVVTAAAMALSEALRQ 143 >gi|296138668|ref|YP_003645911.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM 20162] gi|296026802|gb|ADG77572.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM 20162] Length = 154 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 2/97 (2%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 H + + ++ +++ + + L+ G E GL P+ Sbjct: 51 YHDLAHVRVHADLEAAWSALRPERVFAFTAHARRYHHEIAYSAGDVLMFGPEPTGLPPEA 110 Query: 245 QE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 T + M ++LN+SNAAAV Y Sbjct: 111 LGDPHVTESVRIPMLASRRSLNLSNAAAVVAYEAWRQ 147 >gi|294787535|ref|ZP_06752788.1| RNA methyltransferase, TrmH family [Parascardovia denticolens F0305] gi|315226880|ref|ZP_07868668.1| 23S ribosomal RNA methyltransferase [Parascardovia denticolens DSM 10105] gi|294484891|gb|EFG32526.1| RNA methyltransferase, TrmH family [Parascardovia denticolens F0305] gi|315121012|gb|EFT84144.1| 23S ribosomal RNA methyltransferase [Parascardovia denticolens DSM 10105] Length = 330 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ G E +GL + + G ++LNV+ +AAV LY Sbjct: 278 PTIVLFGNEARGLDDPLINRCQEAVRIPLYGKAESLNVAMSAAVILY 324 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 9/94 (9%), Positives = 28/94 (29%), Gaps = 12/94 (12%) Query: 27 HRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 + ++++ ++++ + + G V A+ ++ L ++ L + Sbjct: 10 NPRSQRIRHIADLARAKNRKKYGRFLVEGPQGVREAIGCKPGQVLDLYCDQDFLQFQESQ 69 Query: 85 A----------NLPHPFPVKTVPPQTIDKIVGKE 108 A V + +D I Sbjct: 70 ADSVVGDLAYKADDRGIHVHVCSAEVMDAISKDC 103 >gi|330723253|gb|AEC45623.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis MCLD] Length = 256 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 89/233 (38%), Gaps = 10/233 (4%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + + + AL +K+ ++ T + + + + KI Sbjct: 28 NAFLVENIKDLELALE--YKKVIKIYTTN-----ANLQIKSFKNEQIILISHSIMKKITS 80 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 E+ + +AL L L+ + +++L+++ DP N+G I+R+ AF I + Sbjct: 81 YESASEVVAL-CNKLDVVKLENFLQHKRIVILENIQDPGNLGTIIRNCSAFDFALIYSGV 139 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + S+ +K A + +S + D L + + T +K Sbjct: 140 DFYNSKVISASKGAIFKTPILKVENLSQILDKLHQNNFVSIGTFLSKKAAKIKDFVIENE 199 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K A+I G E G+ ++ ++ + ++LN++NA A+ LY Sbjct: 200 QKYAIIFGNESSGISAALEKIIQKQIYIPIA--FESLNIANATAILLYEFSTQ 250 >gi|325001131|ref|ZP_08122243.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia sp. P1] Length = 228 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+ GAEG GL P+ +E A + G +++N AA + ++ Sbjct: 166 LPRDCVLVFGAEGPGLSPELREAADLAVSIAQFGSTRSINAGVAAGIVMHAWVR 219 >gi|33861855|ref|NP_893416.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640223|emb|CAE19758.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 246 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 74/236 (31%), Gaps = 16/236 (6%) Query: 57 VSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 + L + + ++L T+ L + + + V + + V + AL Sbjct: 2 IEEMLKSGNHP-SKILTTEKWLDKNEDLYQKIDQSLINVVSEEVLASAVSTKNPDGVAAL 60 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP------ 170 + ++VLD + DP N+G + R+A+A I+ P Sbjct: 61 VEISSIPNFDFNNIEDDFILVLDRIQDPGNMGNLFRTALAAGVSKILLAGGAHPLGQKVL 120 Query: 171 -------SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + + S+KP + Sbjct: 121 RASSGSVFHLPFKRFDGGEEEIINSLLSSLDQFSKNGFQIISTSSHNKNLYKSQKPYWEI 180 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS-NAAAVALYITQN 278 + ALILG EG G+ + QE + ++++LNV+ A + L + Sbjct: 181 DWSKPTALILGNEGNGIHKRIQEAFNETITIPHSELVESLNVACVAVPLLL-ERKR 235 >gi|313674753|ref|YP_004052749.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126] gi|312941451|gb|ADR20641.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126] Length = 231 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 25/50 (50%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + IA+++G E G+ + + A L M G ++ NVS A+ + Y Sbjct: 130 LDQPIAIVMGNERDGISEEAKSMADEFVRLPMHGFTESYNVSVASGITFY 179 >gi|300741849|ref|ZP_07071870.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567] gi|300381034|gb|EFJ77596.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567] Length = 155 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++ P N G +R A + + E A L ++ H + Sbjct: 1 MFKILFYTPEIPGNTGNAIRLAAVTGAELHLVEPLGFNFEDAHLRRAGLDY--HDLAVVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATS 250 + T + ++ + D L+ G E GL Q E T Sbjct: 59 VHKTLQDAWKAMMPARVFAFTTTAATSYADLEYRDGDVLMFGPESVGLPADVQQDEHITE 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++N+A++A++ Sbjct: 119 RVKIPMIPGRRSLNLANSASIAIFEAWRQ 147 >gi|119509165|ref|ZP_01628316.1| RNA methyltransferase TrmH, group 1 [Nodularia spumigena CCY9414] gi|119466331|gb|EAW47217.1| RNA methyltransferase TrmH, group 1 [Nodularia spumigena CCY9414] Length = 245 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P E ++ ALI G E +GL + A + +LN+++A + Y Sbjct: 100 PWLLESPSEPAALIFGREDRGLSNEELNYAQRFVRIPSSENYSSLNLASAVGICCYELAQ 159 Query: 279 H 279 + Sbjct: 160 Y 160 >gi|297568789|ref|YP_003690133.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurivibrio alkaliphilus AHT2] gi|296924704|gb|ADH85514.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurivibrio alkaliphilus AHT2] Length = 164 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHM-PGIIKALNVSNAAAVALYITQ 277 + L+ G E KGL +T A + M I+++N++ AAAV LY Sbjct: 101 YTEVRFQPGDFLVFGKETKGLPEETLALYADRCCAIPMSNPAIRSINLAQAAAVVLYEAI 160 Query: 278 NH 279 Sbjct: 161 RQ 162 >gi|225164081|ref|ZP_03726364.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] gi|224801322|gb|EEG19635.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] Length = 252 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 77/240 (32%), Gaps = 17/240 (7%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEA 109 G+ V A + +L +L L + V P + KI G Sbjct: 10 GLPAVKARFQRDAASFRRLYFDYETARKLGIICKTLALAKKV-YRCVEPAELAKIAG--T 66 Query: 110 VHQGLALETAPLL-------SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +H G + + L++LD + + HN+GAI R+A F I Sbjct: 67 LHHGGVVAVVDEPALRAPLPREVRAWAKAGTPLLLLDRIGNAHNVGAIARTAAFFGVAHI 126 Query: 163 ITTKRYSPSESAVLAKSASG----ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 I + A + L ++ L + Sbjct: 127 IIPAHAFAALPGESAHRIAEGGLEHLTLWRVPTLARFCAELHEAGYEVVGAATRGGALTL 186 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P AL+LG E GL + + T + + G I++LNVS AAA+ ++ Sbjct: 187 PALPGGGGGPRALVLGNEEHGLAAEVADACTRLVTIPGSGKIESLNVSAAAAILMFALLK 246 >gi|59712952|ref|YP_205728.1| rRNA methylase [Vibrio fischeri ES114] gi|59481053|gb|AAW86840.1| predicted rRNA methylase [Vibrio fischeri ES114] Length = 159 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 2/75 (2%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALN 264 + ++ + L+ G E +GL + + M ++LN Sbjct: 78 HRIFACTTKTTGHHTTPTYQKGDVLLFGPETRGLPADLIDGLPMEQRVRIPMMPDSRSLN 137 Query: 265 VSNAAAVALYITQNH 279 +SN+ A+ ++ Sbjct: 138 LSNSVAIIVFEAWRQ 152 >gi|87124502|ref|ZP_01080351.1| putative tRNA/rRNA methyltransferase (SpoU family protein) [Synechococcus sp. RS9917] gi|86168074|gb|EAQ69332.1| putative tRNA/rRNA methyltransferase (SpoU family protein) [Synechococcus sp. RS9917] Length = 161 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI--IKALNVSNAAAVALYITQNH 279 Q L+ G E GL + + + MPG +++LN+S AAA+ + Sbjct: 98 QMRFEPGDVLLFGREDLGLPESVRRRCDQLCTIPMPGGAAVRSLNLSVAAALVSFQAGLQ 157 Query: 280 F 280 Sbjct: 158 L 158 >gi|315652201|ref|ZP_07905196.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986] gi|315485507|gb|EFU75894.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986] Length = 165 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 1/145 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I RS VA + + + ++ E + S+L Sbjct: 3 IVLLEPEIPDNTGNIGRSCVATNTRLHLIEPLGFKLSEKRIKRAGMDYWEKLDLTVYSDL 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254 D +K ++ + + + + ++ G E G+ + E + + Sbjct: 63 KDFYEKNPKAKEHMYFATTKAHHTYKDVLYDCDEYIMFGKESAGIPEEILAENEENCIRI 122 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 M G I++LN+SN+ AV LY + Sbjct: 123 PMWGDIRSLNLSNSVAVILYEALSQ 147 >gi|302205595|gb|ADL09937.1| Putative tRNA/rRNA methyltransferase [Corynebacterium pseudotuberculosis C231] gi|302330148|gb|ADL20342.1| tRNA/rRNA methyltransferase (SpoU) [Corynebacterium pseudotuberculosis 1002] gi|308275830|gb|ADO25729.1| tRNA/rRNA methyltransferase (SpoU) [Corynebacterium pseudotuberculosis I19] Length = 176 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 4/147 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++ D P N G +R + E L ++ H + Sbjct: 26 IIFDQPVIPPNTGNAIRMCAGTGAHLHLAGPLGFNLEEKNLRRAGLDY--HDLAEVSIHE 83 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATSMAH 253 + ++ K AL+ G E GL +T T + Sbjct: 84 NLERCFDSLPHTRIFAFTTHGKTHHSDIRWESGDALLFGTEPTGLAEETLVHPRITQLVR 143 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNAAAVA Y Sbjct: 144 IPMLPGRRSMNLSNAAAVAAYEVWRQL 170 >gi|255038542|ref|YP_003089163.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM 18053] gi|254951298|gb|ACT95998.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM 18053] Length = 178 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 3/152 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE---H 186 L++VLD++ +NIG+ R+A AF + I+ + +SA GA Sbjct: 21 EKFPLVIVLDNIRSLNNIGSFFRTADAFRAEKIVLCGYTQQPPHREITRSALGAEMAVAW 80 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + +AL+ + + D A + G E +G+ + Sbjct: 81 EKNPSAVDAVNALKSQGYNVWCVEQAEGSVLLQDFEPAAGDPYAFVFGNEVEGVADEVIA 140 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + G + NVS +A + L+ Sbjct: 141 ASDGCLEIPQFGTKHSFNVSVSAGIVLWDYIR 172 >gi|329946838|ref|ZP_08294250.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral taxon 170 str. F0386] gi|328526649|gb|EGF53662.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral taxon 170 str. F0386] Length = 152 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 6/150 (4%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L ++ P N GA +R + + + ++ + + Sbjct: 1 MLHVIFFSPRIPGNTGAAIRLSANTGSMLHLVDPLFDMDDAKLRRAGLD----YHDLANT 56 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + +S +++ Q D L+ G E GL + + ++ Sbjct: 57 LVHATWQECLEHVPGRIFAFTSHTERLYTQVDWRDDDTLLFGPEPTGLPQEILDHPRVSA 116 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN++N+AA+ LY Sbjct: 117 HLRIPMVEGNRSLNLANSAAIGLYEAWRSL 146 >gi|268593333|ref|ZP_06127554.1| RNA methyltransferase, TrmH family, group 2 [Providencia rettgeri DSM 1131] gi|291311030|gb|EFE51483.1| RNA methyltransferase, TrmH family, group 2 [Providencia rettgeri DSM 1131] Length = 167 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 48/158 (30%), Gaps = 10/158 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R D + + L ++ E Sbjct: 1 MPHIVLFEPEIPPNTGNIIRLCANTGFDLHLIHPLGFTWDDKRLRRAGLDYSEFADIKHH 60 Query: 193 SNLT--------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + G + L++ K + L+ G E +GL P Sbjct: 61 HDYFAFLKSEGLNPDNNQSESGARVFALTTKGKPSHSNVSYQENDYLMFGPETRGLPPYV 120 Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M +++N+SN+ AV ++ Sbjct: 121 LDNMPIEQKIRIPMLADSRSMNLSNSVAVVVFEAWRQL 158 >gi|288940600|ref|YP_003442840.1| TrmH family RNA methyltransferase [Allochromatium vinosum DSM 180] gi|288895972|gb|ADC61808.1| RNA methyltransferase, TrmH family, group 1 [Allochromatium vinosum DSM 180] Length = 260 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 22/50 (44%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +AL+LG E GL + H+ +LNV+ AA V Y + Sbjct: 116 VALMLGRESSGLTNDELARCHFLVHIPTNPDFSSLNVAAAAQVLAYEIRR 165 >gi|330831579|ref|YP_004394531.1| TrmH family RNA methyltransferase [Aeromonas veronii B565] gi|328806715|gb|AEB51914.1| RNA methyltransferase, TrmH family, group 2 [Aeromonas veronii B565] Length = 154 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + + ++ H Sbjct: 1 MLDIVLYQPEIPPNTGNIIRLCANTGYRLHLIEPLGFEWDDKRVKRAGLDY--HEFAEVK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + ++ + AL+ G E +GL + E+ Sbjct: 59 RWPSYEAFLAAVAPKRVFACTTKGRTAHSAAQYALGDALLFGPESRGLPIEIIESLPFEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y + Sbjct: 119 RLRIPMVPQSRSMNLSNAVSVFVYESWRQL 148 >gi|325479544|gb|EGC82640.1| RNA methyltransferase, TrmH family, group 2 [Anaerococcus prevotii ACS-065-V-Col13] Length = 152 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N+G I R+ V + L ++ EH+ + Sbjct: 1 MFNIVLIAPEHPGNVGNIGRTCVLTESRLHLIRPFKFDFSDRFLKRAGIDYWEHVDLVIH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 ++ + ++ + F + SD + D LI G E +G+ K E + + Sbjct: 61 DSIEEFMEYIKDKRFFFVETGSDKRYTD--VSFKDGDYLIFGREKEGIDQKLLDEYSKQV 118 Query: 252 AHLHMPGIIK-ALNVSNAAAVALYITQNH 279 + M I +LN++N+ ++ LY Sbjct: 119 ITIPMTKKIDRSLNLANSVSIILYEALRQ 147 >gi|116070592|ref|ZP_01467861.1| putative tRNA/rRNA methyltransferase (SpoU family) protein [Synechococcus sp. BL107] gi|116065997|gb|EAU71754.1| putative tRNA/rRNA methyltransferase (SpoU family) protein [Synechococcus sp. BL107] Length = 166 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 9/154 (5%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + L + L P N G I R+ AF + + L ++ H+ Sbjct: 5 NPEAPLRVALFEPRIPPNTGNIARTCAAFQLPLSLIEPLGFQIDDRSLRRAGLDYWPHVQ 64 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + + L+ G E GL ++ Sbjct: 65 VSTHGSFDALKDGLLPHNRIIGCSRRGGSCLS-EFEFQHGDVLLFGREDTGLPEDIRDQC 123 Query: 249 TSMAHLHMP--------GIIKALNVSNAAAVALY 274 S+ + MP G +++LN+S A A+ Y Sbjct: 124 HSIVTIPMPGAAAPSGQGGVRSLNLSVACALVTY 157 >gi|227541826|ref|ZP_03971875.1| SpoU family rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227182269|gb|EEI63241.1| SpoU family rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] Length = 161 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 4/147 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +V +H P N G +R + E L ++ H + Sbjct: 11 VVFEHPVIPPNTGNAIRMCAGTGAHLHLIRPLGFDLEDRHLRRAGLDY--HDLARVTVHD 68 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT--QETATSMAH 253 + G + + L L+ G E GL + + T Sbjct: 69 SLDACLATLPGARVFAFTGHCSNMLFDVRFAPGDVLLFGTEPTGLTDEAMNHDRVTQKVR 128 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNAAAVA Y Sbjct: 129 IPMLEGRRSMNLSNAAAVATYEAWRQL 155 >gi|329956389|ref|ZP_08296986.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056] gi|328524286|gb|EGF51356.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056] Length = 178 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 3/160 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++VLD++ HNIG++ R++ AF + I + + K+A GA Sbjct: 19 EFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITAVPPHPEMHKTALGAE 78 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + + N +A+ + + G+ + + E + K A+++G E KG++ Sbjct: 79 FTVDWKYVDNAVEAVDNLRNGGYTVYSVEQAEGSIMLNELTLDRTGKYAIVMGNEVKGVQ 138 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + + + G +LNVS A + ++ N Sbjct: 139 QEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFNKLK 178 >gi|197334706|ref|YP_002157141.1| RNA methyltransferase, TrmH family, group 2 [Vibrio fischeri MJ11] gi|197316196|gb|ACH65643.1| RNA methyltransferase, TrmH family, group 2 [Vibrio fischeri MJ11] Length = 159 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 2/75 (2%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALN 264 + ++ + L+ G E +GL + + M ++LN Sbjct: 78 HRIFACTTKTTGHHTTPSYQKGDVLLFGPETRGLPADLIDGLPMEQRVRIPMMPDSRSLN 137 Query: 265 VSNAAAVALYITQNH 279 +SN+ A+ ++ Sbjct: 138 LSNSVAIIVFEAWRQ 152 >gi|319953644|ref|YP_004164911.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM 14237] gi|319422304|gb|ADV49413.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM 14237] Length = 176 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 3/152 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L++VLD++ +NIG++ R+A AF + I + + K+A GA + + + + Sbjct: 24 PLIIVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAQPPHKDIHKTALGATDSVVWEYV 83 Query: 193 SNLTDALQ---KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 N D +Q + + + K++K ALI G E KG+ + + Sbjct: 84 ENTMDVIQSLKENKVTTIAIEQAENAVFLNDFKVSKDEKYALIFGNEVKGVAQEVVSSCD 143 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++ + G +LN+S +A V ++ Sbjct: 144 TVVEIPQYGTKHSLNISVSAGVVVWDLWAKLN 175 >gi|291294429|ref|YP_003505827.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279] gi|290469388|gb|ADD26807.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279] Length = 160 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 3/148 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I R+ A + + SA L ++ + Sbjct: 1 MFKVVLYQPEIPQNAGNIARTCAATGAELHLIRPLGFQWNSAKLRRAGLDYWP-EVDYVL 59 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + A + + SS + + L+ G E +GL + E Sbjct: 60 HDSWRAFLETLPPDGRIWAFSSKVSRLYTEVRYQPGDYLLFGPESRGLPSEVLERFPG-V 118 Query: 253 HLHMPG-IIKALNVSNAAAVALYITQNH 279 + MPG ++LN++ A V LY Sbjct: 119 TIPMPGRGGRSLNLAVAVGVGLYEALRQ 146 >gi|119952855|ref|YP_945064.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia turicatae 91E135] gi|119861626|gb|AAX17394.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia turicatae 91E135] Length = 232 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 61/192 (31%), Gaps = 5/192 (2%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 + V + + +I + + + + R + L +VL+ + P N A Sbjct: 10 IKLYFVSNEILKRI----EILSEFITQRRRERIDEVLSNRTNYLTLVLEDIFQPQNASAT 65 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +R+ I + + + + + + + Sbjct: 66 MRTIEILGLSNIHIIE-TNNTYTLNPGVVLGASKWIDIIKYQCVESAFDNLKGNGYKIVA 124 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + L+ +DK+A+ G E GL E A + M G ++ N+S A + Sbjct: 125 TSLDNEAIFLDDFPIDDKMAIFFGTELTGLSNTVLENADLHLKIPMYGFTQSYNLSVAVS 184 Query: 271 VALYITQNHFAK 282 + Y + K Sbjct: 185 IVFYSLISRLRK 196 >gi|149917858|ref|ZP_01906353.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1] gi|149821378|gb|EDM80780.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1] Length = 240 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNHFA 281 + + L+ G E GL P+ + + + + G ++ N+S +AA+ LY A Sbjct: 146 DRPLCLLFGNEHAGLSPEAKASCDLRFRIPIHGFAESYNLSVSAALTLYSVTTRRRA 202 >gi|118474338|ref|YP_891998.1| tRNA/rRNA methyltransferase [Campylobacter fetus subsp. fetus 82-40] gi|118413564|gb|ABK81984.1| tRNA/rRNA methyltransferase [Campylobacter fetus subsp. fetus 82-40] Length = 162 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 49/145 (33%), Gaps = 1/145 (0%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL N G+I R V C + + L ++ + + + +L Sbjct: 4 IVLVRPEIHTNTGSIGRMCVNSGCRLHLIKPLGFMLDDKHLKRAGLDYWDKLDLVIWESL 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHL 254 D L + + + ++ + + L GAEG GL + + Sbjct: 64 DDFLTQNIKFKDRFFFATTKTNRLYFNTKFQKGDFLFFGAEGSGLPLDLMKIKKENCITI 123 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 M G ++LN++ + + Y Sbjct: 124 PMSGDGRSLNLATSVGIITYEAIRQ 148 >gi|89898732|ref|YP_515842.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56] gi|89332104|dbj|BAE81697.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56] Length = 156 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 1/71 (1%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNA 268 LS+ + + G+E KGL + + +L M +++LN++ Sbjct: 75 FCLSTKGSQCYGDVSLPMDGVYVFGSESKGLPEEVLKKYYNHCYYLPMKPGVRSLNLATT 134 Query: 269 AAVALYITQNH 279 V L+ Sbjct: 135 VGVVLFEAVRQ 145 >gi|288559911|ref|YP_003423397.1| RNA methyltransferase TrmH family [Methanobrevibacter ruminantium M1] gi|288542621|gb|ADC46505.1| RNA methyltransferase TrmH family [Methanobrevibacter ruminantium M1] Length = 263 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 NDKIA++ G EG GL + + + +N+S+AAA+ LY + + Sbjct: 128 MNYNDKIAILFGREGNGLTNAEVDMCDLIVSIPTDPSYPIMNISHAAAIILYEIFKNRNE 187 >gi|149173449|ref|ZP_01852079.1| Gm2251 methyltransferase of 23S rRNA [Planctomyces maris DSM 8797] gi|148847631|gb|EDL61964.1| Gm2251 methyltransferase of 23S rRNA [Planctomyces maris DSM 8797] Length = 251 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 13/233 (5%) Query: 54 VHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTV--PPQTIDKIV--G 106 H+V AAL + ++ T + D PV PQ + + Sbjct: 8 PHSVMAALQTRPIDVTEIRLTAGSAQGSWGDVADEARSQRIPVVIKKSAPQKMKRRQAED 67 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + G P L+ L + LD + DPHNIGAI R+A F Sbjct: 68 QGRRTAGSVALVKPRTPFVLNELFPDSGQETGGLWLALDCIQDPHNIGAIFRTAAFFGVR 127 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+ TK S +A + ASG +E +P+ +NL+ ++ + G +G S +++ + Sbjct: 128 GIVLTKDRSAPINATVYDVASGGMEAVPFAVETNLSRSMTQAKETGVWIMGTSEHAEEDV 187 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ +++G E KGLR T E + L GI+ +LN S AA + + Sbjct: 188 SVYSQDRPWMVVIGNEEKGLRRLTLEQCDVVTRLTPTGIVDSLNASVAAGIMI 240 >gi|291232158|ref|XP_002736012.1| PREDICTED: RNA methyltransferase like 1-like [Saccoglossus kowalevskii] Length = 445 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 4/81 (4%) Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPG 258 + L+ K K A+++G E GL + + A H+ M Sbjct: 354 MNDMDVDKKLNCVPTKDFYNIDWTVKSAIVIGGETHGLSKQAVDLADETYGYKVHIPMAF 413 Query: 259 IIKALNVSNAAAVALYITQNH 279 + +LN + A +V + + Sbjct: 414 GMDSLNAAMATSVVTFEAKRQ 434 Score = 55.6 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 1/179 (0%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + K+ + +++ + + ++ Q + + L G + A+ + + Sbjct: 114 RLRFEKVNAADKRVRRILTLMRSRKYREQTKKVLLEGRRLIIDAILAGAECHTIYFSRVE 173 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 +L + W + + +V + + + L + ++ L + Sbjct: 174 SLEGIPWYETDAELLRIPYKEVKLWSDVVTPQGIMAVFSQPRFEDLPM-MSEEQSIPLTV 232 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + D++ +P N+GA+LRSAVA I+ TK + ++ +GA Sbjct: 233 ICDNIREPGNLGALLRSAVAAGSQQILVTKGCVDIWDLKVLRAGAGAHFRTQIHNNLPW 291 >gi|297745670|emb|CBI40924.3| unnamed protein product [Vitis vinifera] Length = 1203 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 I KI L+LG E +G+ + + G++++LNV + A+AL+ Sbjct: 1143 YIFPKKIVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1199 >gi|240948513|ref|ZP_04752886.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor NM305] gi|240297021|gb|EER47592.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor NM305] Length = 159 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFTWDDKKLKRSGLDY--HEFVDIQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + L++ + L+ G E +G+ +T + Sbjct: 59 KYKNFDDFLARAKPKRLFALTTKGEPNHSDVHYELGDFLMFGPESRGIPKAILDTLPMSQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y F Sbjct: 119 KIRIPMCKDSRSMNLSNSVAVVVYEAWRQF 148 >gi|223041990|ref|ZP_03612174.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor 202] gi|223017247|gb|EEF15675.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor 202] Length = 159 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFTWDDKKLKRSGLDY--HEFVDIQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + L++ + L+ G E +G+ +T + Sbjct: 59 KYKNFDDFLARAKPKRLFALTTKGEPNHSDVHYELGDFLMFGPESRGIPKAILDTLPMSQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y F Sbjct: 119 KIRIPMCKDSRSMNLSNSVAVVVYEAWRQF 148 >gi|258645763|ref|ZP_05733232.1| RNA methyltransferase, TrmH family, group 2 [Dialister invisus DSM 15470] gi|260403133|gb|EEW96680.1| RNA methyltransferase, TrmH family, group 2 [Dialister invisus DSM 15470] Length = 170 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VL P N G I R A + + L ++ + + Sbjct: 1 MHIVLVEPEIPGNTGNIARLCAAEHLTLHLVEPLGFQIDDKHLKRAGLDYWDLLDVHVHP 60 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252 N ++ + F + + L+ G E KGL + Sbjct: 61 NYDSVVRMLAGHHFYLNTTKAIRSYTD--ISYDGDDVLVFGKETKGLPEELLRSHKEDCI 118 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA A+ Sbjct: 119 RIPMIEEARSLNLSNAVAIVAMEAMRQ 145 >gi|42521894|ref|NP_967274.1| rRNA methyltransferase [Bdellovibrio bacteriovorus HD100] gi|39574424|emb|CAE77928.1| rRNA methyltransferase [Bdellovibrio bacteriovorus HD100] Length = 160 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 3/148 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +VL P N G I R+ V +C+ I K L ++ H+ + R Sbjct: 8 FRIVLIEPEIPQNTGNIGRTCVGTNCELHIVGKMGFEINDTNLKRAGLDYWPHLTWYRHE 67 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMA 252 D + + + + + E + G E KGL P+ + Sbjct: 68 TFEDWWKHVEDPSRIWLFTTKTQRTYFEP-QYQSGDWFVFGKETKGLDPEFLQKHPQQTV 126 Query: 253 HLHMPG-IIKALNVSNAAAVALYITQNH 279 + M G ++LN++ + A+A Y Sbjct: 127 TIPMIGEGARSLNLATSVAIAAYEGLRQ 154 >gi|313141828|ref|ZP_07804021.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313130859|gb|EFR48476.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 157 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 Q +VL P N G I R A + L ++ H+ Sbjct: 1 MQFHIVLHQPRIPQNTGNIGRLCFASDSVLHLIHPLGFSITQKELKRAGMDYWNHLEVYE 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL-RPKTQETATS 250 NL+ ++ L++ S+ P L G E GL Sbjct: 61 WENLSSFMESSLLEIPHC-YLTTKSQTPYYNAPLKKGAYLHFGREDAGLDSTLLSHYKDY 119 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN++ + + LY Sbjct: 120 CYTIPMQNNARSLNLATSVGIVLYEGIRQR 149 >gi|301095552|ref|XP_002896876.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] gi|262108626|gb|EEY66678.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] Length = 664 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K+ L+LG E +G+ + + + G++++LNV + A+ L+ Sbjct: 597 YTLPRKMVLVLGREKEGIPVEVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 653 >gi|225163934|ref|ZP_03726225.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] gi|224801470|gb|EEG19775.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] Length = 161 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 4/151 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I R + L ++ + Sbjct: 1 MIHIVLFQPEIPQNTGNIGRMCALTQSRLHLIHPLGFTITDRHLRRAGMDYWFSLDVHHH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET--AT 249 ++ L H+ + + L + + D L+ G EG G + A Sbjct: 61 ADWAAFLTSPHAPPRERLWLFTTHATRRHWDAAFADGDGLVFGNEGHGAPAWLHDEIGAA 120 Query: 250 SMAHLHM-PGIIKALNVSNAAAVALYITQNH 279 + +++LN+S AA +A Y Sbjct: 121 RRVTIPHANPDLRSLNLSTAAGIACYEALRQ 151 >gi|283769368|ref|ZP_06342267.1| putative RNA methyltransferase, TrmH family, group 2 [Bulleidia extructa W1219] gi|283104025|gb|EFC05409.1| putative RNA methyltransferase, TrmH family, group 2 [Bulleidia extructa W1219] Length = 172 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I+R+ AF + + L ++ E++ Y++ Sbjct: 1 MIHIVLFEPEIPGNTGNIMRTCAAFHMKLHLIEPLGFHLDEKHLKRAGMDYRENVDYVKH 60 Query: 193 SNLTDALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 N Q+ + G F + K+ +I L+ G E G+ Sbjct: 61 INWDSFFQEHGNQGLFYYVTRYGKHTPDSFMYPKDQEIYLVFGKESTGIPKPILANHEDF 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN A+ Y Sbjct: 121 CMRIPMVEKARSLNLSNCVALCAYEVNRQ 149 >gi|167747295|ref|ZP_02419422.1| hypothetical protein ANACAC_02009 [Anaerostipes caccae DSM 14662] gi|167653273|gb|EDR97402.1| hypothetical protein ANACAC_02009 [Anaerostipes caccae DSM 14662] Length = 166 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSA-VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ + +I + +E + Sbjct: 1 MLHIVLHEPEMPANTGNIGRTCVACGAVLHLIEPLGFKLNEKMIKRAGLDYWEHLDVRTY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250 ++ + H + S + + ++ + L+ G E G+ + + + Sbjct: 61 VNFEDFLEKNHHPKIYMATTKSRQTYADVTYGGADEDVYLMFGKESAGIPEEILLDYKET 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN+ A+ Y Sbjct: 121 AVRIPMLPEIRSLNLSNSVAIVAYEVLRQ 149 >gi|166154755|ref|YP_001654873.1| SpoU family rRNA methylase [Chlamydia trachomatis 434/Bu] gi|166155630|ref|YP_001653885.1| SpoU family rRNA methylase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301336029|ref|ZP_07224273.1| SpoU family rRNA methylase [Chlamydia trachomatis L2tet1] gi|165930743|emb|CAP04240.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis 434/Bu] gi|165931618|emb|CAP07194.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 151 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 231 LILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 I GAE KGL + ++ ++ M ++LN++ + + +Y Sbjct: 96 YIFGAESKGLSQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 145 >gi|187250688|ref|YP_001875170.1| putative tRNA/rRNA methyltransferase (SpoU) [Elusimicrobium minutum Pei191] gi|186970848|gb|ACC97833.1| Putative tRNA/rRNA methyltransferase (SpoU) [Elusimicrobium minutum Pei191] Length = 148 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGIIKALNVSN 267 S+ KK LI G+E G + ET + M G +++LN+S Sbjct: 75 MFFFSTKGKKSFWDIKYPPDSYLIFGSESCGFPKEIYETYKEKLFTIPMTGPVRSLNLST 134 Query: 268 AAAVALYITQNH 279 +A V L+ Sbjct: 135 SAGVVLFEALRQ 146 >gi|695296|gb|AAB41449.1| spoU [Chlamydia trachomatis] Length = 119 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 231 LILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 I GAE KGL + ++ ++ M ++LN++ + + +Y Sbjct: 64 YIFGAESKGLSQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 113 >gi|216263798|ref|ZP_03435792.1| tRNA/rRNA methyltransferase [Borrelia afzelii ACA-1] gi|215979842|gb|EEC20664.1| tRNA/rRNA methyltransferase [Borrelia afzelii ACA-1] Length = 218 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 N+K+A+ G E GL + E A + M G ++ N+S A A+ +Y Sbjct: 122 NFPINNKMAVFFGTELTGLSSEVLEAADLCVKIPMYGFTQSYNISVAVAIVMY 174 >gi|46907168|ref|YP_013557.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str. F2365] gi|47092144|ref|ZP_00229937.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes str. 4b H7858] gi|226223554|ref|YP_002757661.1| CspR protein, rRNA methylase homolog [Listeria monocytogenes Clip81459] gi|254823794|ref|ZP_05228795.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|254852429|ref|ZP_05241777.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|254931319|ref|ZP_05264678.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|255521487|ref|ZP_05388724.1| hypothetical protein LmonocFSL_09725 [Listeria monocytogenes FSL J1-175] gi|300764145|ref|ZP_07074140.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes FSL N1-017] gi|88979161|sp|Q721N0|TRML_LISMF RecName: Full=Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase LMOf2365_0956 gi|46880435|gb|AAT03734.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes serotype 4b str. F2365] gi|47019584|gb|EAL10324.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes str. 4b H7858] gi|225876016|emb|CAS04722.1| Putative CspR protein, rRNA methylase homolog [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605737|gb|EEW18345.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|293582869|gb|EFF94901.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|293593016|gb|EFG00777.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|300515135|gb|EFK42187.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes FSL N1-017] gi|328466957|gb|EGF38060.1| hypothetical protein LM1816_13012 [Listeria monocytogenes 1816] gi|328475409|gb|EGF46178.1| hypothetical protein LM220_04151 [Listeria monocytogenes 220] gi|332311343|gb|EGJ24438.1| hypothetical protein LMOSA_18260 [Listeria monocytogenes str. Scott A] Length = 169 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 48/152 (31%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + ++ +L ++ +++ Sbjct: 1 MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQETATS 250 +L + +K F I +K + G E GL + Sbjct: 61 YDSLDEFFEKNEGGEFYYITKFGRHVYSDIDYSDPNKDYFFVFGKETTGLPDALLQKNEE 120 Query: 251 -MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M I++LN+SN AA+ Y Sbjct: 121 NCLRIPMTDHIRSLNLSNTAAILAYEALRQQN 152 >gi|302337050|ref|YP_003802256.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM 11293] gi|301634235|gb|ADK79662.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM 11293] Length = 229 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 54/162 (33%), Gaps = 5/162 (3%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV---- 175 ++ R + +VL+ + PHN A+LRS F + + + + Sbjct: 23 WERIISILEERTRYITVVLEDIYQPHNASAVLRSCEGFGIQDVHVIENRNRFTISSGVAL 82 Query: 176 -LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + K + + + +I K A + G Sbjct: 83 GTSGWLDIHRYREEGAGNTLKAVHELKAKGYRIVATSPHAQDINLEDFDISAGKSAFLFG 142 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 E +G+ + A + M G +++ N+S + A+ L+ Sbjct: 143 NELEGVSQEAMALADEFMKIPMRGFVESFNISVSCAIVLHHL 184 >gi|163859022|ref|YP_001633320.1| rRNA methylase [Bordetella petrii DSM 12804] gi|163262750|emb|CAP45053.1| rRNA methylase [Bordetella petrii] Length = 156 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G +R + + A L ++ E P Sbjct: 1 MFHVVLVCPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDARLRRAGLDYHEWQPVQVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 L AL + L++ +++ + + + G E GL + Sbjct: 61 DTLEQALAATGAPPAHIYALTTRAQRNVAEVAFGPDDVFVFGRETAGLSDEHMALFAPQQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 121 CLRLPMRAGQRSLNLSNAVAVTVFEAWRQ 149 >gi|224102553|ref|XP_002312722.1| predicted protein [Populus trichocarpa] gi|118483281|gb|ABK93543.1| unknown [Populus trichocarpa] gi|222852542|gb|EEE90089.1| predicted protein [Populus trichocarpa] Length = 216 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALN 264 +DS P+ + A +LG EG GL K E ++ G +LN Sbjct: 73 CDICGVEITDSAFPVNEHPFKRSTAFLLGNEGTGLSTKECEICDFFVYIPQYGCGTASLN 132 Query: 265 VSNAAAVALYIT 276 V+ AA++ L+ Sbjct: 133 VTVAASIVLHHF 144 >gi|229820816|ref|YP_002882342.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM 12333] gi|229566729|gb|ACQ80580.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM 12333] Length = 281 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 38/280 (13%), Positives = 93/280 (33%), Gaps = 24/280 (8%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 + ++ + +++ Q+ + L + GV ++ A+ + L + Sbjct: 8 TTTQRVSSRNATFQQWQALLTNRTKRHRAGALLVSGVRPLTVAVESGHVVREWLHGETGS 67 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLDAVRNSQLLM 136 L+ D P V + ++ GK + + LA+ L + Sbjct: 68 LSAWARDLVAHAPAQRFVVADELRHELGGKEQGTPELLAVVEMADGDIRRLDAAADFLGV 127 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +LD + P N+G I+RS A ++ T + ++++G++ +P + + Sbjct: 128 LLDRPSSPGNVGTIIRSVDALGGHAVVVTGHATDPYDPQAVRASTGSVFGVPIVSAAAPR 187 Query: 197 DALQKMHSWGFQTIG-----LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + L+ + + +++ + + L+ G E GL ++ A + Sbjct: 188 EVLEWVDGVRRAGVPLRLVATDERAERDVWDHDLTGPVLLLTGNETTGLSQAWRDAADDV 247 Query: 252 AHLHM---------PGIIKALNVSNAAAVALYITQNHFAK 282 + M A+ LY + Sbjct: 248 VRIPMAGSASSLNAASAT--------TAI-LYEAARQRLR 278 >gi|269126608|ref|YP_003299978.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM 43183] gi|268311566|gb|ACY97940.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM 43183] Length = 186 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + L +G E G P E A ++A++ G + +LNV+ A A+AL + Sbjct: 118 HRAPLEGDVCLAVGGEDHGCSPALLEAADAVAYIPQIGRVGSLNVAVATAIALAEARRR 176 >gi|119577976|gb|EAW57572.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae), isoform CRA_b [Homo sapiens] Length = 158 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPGIIKALNVSNAAAVAL 273 + + L+LG EG GL + Q + + + +P +++LNVS AA + L Sbjct: 46 MSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPPGLESLNVSVAAGILL 105 Query: 274 YITQNHFA 281 + + Sbjct: 106 HSICSQRK 113 >gi|47227791|emb|CAG08954.1| unnamed protein product [Tetraodon nigroviridis] Length = 437 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 52/207 (25%), Gaps = 10/207 (4%) Query: 84 DANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 D L K P + L A + + + Sbjct: 224 DVLLTKGISRIKKRASPTVRWVSLKLIPFFFKPTGCVDVWEPKVLRAAMGAHFRLPILPS 283 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESA----VLAKSASGALEHIPYIRISNLTD 197 ++I + L A+ S + A + N+ Sbjct: 284 LAWNDIESRLTEALTVHIADSSCGSHASQEMADGSASHKPSRAGDFGWVSTRGKTKNMRY 343 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAH 253 S G K + AL++G E G+ P+ A Sbjct: 344 EEYDSDSDGEDEEHHPRVDSKLYHENWAQTPAALVIGGETHGVSPEAVRLAGKTGGHRLF 403 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 + + + +LN + AA++ L+ + Sbjct: 404 IPIVPNVDSLNSAMAASILLFEGRRQL 430 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 2/146 (1%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 + D Y + + ++ S + + L G + AL+ + + Sbjct: 79 QIDDLRYERALPGDKRLGRLVSIARSRTFREHQGKILLEGRRLICDALDAGAVPQMVFFS 138 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 T + L L D + V + I +A+ + P D + Sbjct: 139 TADRLRELPLD--KLRRATLIKVKNEDIKVWSDLVTPQGVIAIFSRPDPLTFPDRRPSVP 196 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSC 159 L +V D++ DP N+G +LR A A C Sbjct: 197 LSLVCDNIRDPGNLGTMLRCAAAAGC 222 >gi|10439014|dbj|BAB15401.1| unnamed protein product [Homo sapiens] gi|31417389|gb|AAH09416.2| MRM1 protein [Homo sapiens] gi|48146831|emb|CAG33638.1| FLJ22578 [Homo sapiens] Length = 155 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPGIIKALNVSNAAAVAL 273 + + L+LG EG GL + Q + + + +P +++LNVS AA + L Sbjct: 43 MSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPPGLESLNVSVAAGILL 102 Query: 274 YITQNHFA 281 + + Sbjct: 103 HSICSQRK 110 >gi|226939034|ref|YP_002794105.1| RNA methyltransferase [Laribacter hongkongensis HLHK9] gi|226713958|gb|ACO73096.1| Probable RNA methyltransferase [Laribacter hongkongensis HLHK9] Length = 154 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R C+ + P E A L ++ E+ Sbjct: 1 MLAVVLFEPEIPPNTGNIIRLCANTGCELHLVEPLGFPLEDARLRRAGLDYHEYAALTVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT-S 250 N Q G + + +++ S +P L+ G E +GL + + A Sbjct: 61 KNWAACRQA--LVGRRMLAMTTRSSRPAFALAFAPGDVLVFGPESRGLPAEVLADFADSE 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++N+SNA AV ++ Sbjct: 119 RLRLPMLPGQRSMNLSNAVAVTVFEAWRQ 147 >gi|126668572|ref|ZP_01739526.1| rRNA methylase [Marinobacter sp. ELB17] gi|126626977|gb|EAZ97620.1| rRNA methylase [Marinobacter sp. ELB17] Length = 290 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 23/71 (32%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + +AL+ G E GL + + H+ +LN++ Sbjct: 100 PWPVMPPDQAATAAASHCGQGTVALVFGRENHGLSNEELQRCHYHIHIPSNPDYSSLNLA 159 Query: 267 NAAAVALYITQ 277 A V Y + Sbjct: 160 MAVQVMCYELR 170 >gi|311111742|ref|YP_003982964.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931] gi|310943236|gb|ADP39530.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931] Length = 162 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 2/97 (2%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 H + + T + ++ + D L+ G E GL Sbjct: 58 YHDLAVVTVHKTLQDAWKAMMPARVFAFTTTAATSYADLEYRDGDVLMFGPESVGLPADV 117 Query: 245 Q--ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q E T + M ++LN++N+A++A++ Sbjct: 118 QQDEHITERVKIPMIPGRRSLNLANSASIAIFEAWRQ 154 >gi|315224226|ref|ZP_07866066.1| SpoU family RNA methylase [Capnocytophaga ochracea F0287] gi|314945959|gb|EFS97968.1| SpoU family RNA methylase [Capnocytophaga ochracea F0287] Length = 180 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 71/160 (44%), Gaps = 3/160 (1%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + L+++LD+V +NIG++ R+ AF + I + + + K+A GA + Sbjct: 17 FKKAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTALGATD 76 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRP 242 + + + N A++K+ G I + + + + K A+I G E KG+ Sbjct: 77 SVAWEYVENTLSAVEKLKEQGVYIISIEQAENSTMLNDFQPNGKQKYAIIFGNEVKGVEQ 136 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + + + G +LN+S +A +A++ K Sbjct: 137 EVVSASDEVIEIPQYGTKHSLNISVSAGIAIWELAMKLRK 176 >gi|256028810|ref|ZP_05442644.1| 23S rRNA methyltransferase [Fusobacterium sp. D11] gi|289766714|ref|ZP_06526092.1| 23S rRNA methyltransferase [Fusobacterium sp. D11] gi|289718269|gb|EFD82281.1| 23S rRNA methyltransferase [Fusobacterium sp. D11] Length = 96 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P + +K A++ G EG G+ + + ++LNV+ A + LY + Sbjct: 32 PYNKIELKEKNAIVFGNEGNGISSDFINITDYKTIIPILSNTESLNVAVATGIILYKFR 90 >gi|167764000|ref|ZP_02436127.1| hypothetical protein BACSTE_02383 [Bacteroides stercoris ATCC 43183] gi|167698116|gb|EDS14695.1| hypothetical protein BACSTE_02383 [Bacteroides stercoris ATCC 43183] Length = 176 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 3/160 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++VLD++ HNIG++ R++ AF + I + A + K+A GA Sbjct: 17 EFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHAEMHKTALGAE 76 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + ++N +A+ + + G+ + + E KN K A+++G E KG++ Sbjct: 77 FTVDWKYVNNTVEAVDNLKNEGYTVYSVEQAEGSIMLNELTLDKNRKYAIVMGNEVKGVQ 136 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + + + G +LNVS A + ++ N Sbjct: 137 QEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFNKLK 176 >gi|326673098|ref|XP_001921874.3| PREDICTED: probable methyltransferase TARBP1 [Danio rerio] Length = 1083 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + + + L+ +K L+LG E +G+ + + G+ ++LNV Sbjct: 1003 YWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQLLDVCVEIPQFGVTRSLNV 1062 Query: 266 SNAAAVALYITQNH 279 +AA+ ++ Sbjct: 1063 HVSAALLVWEYTRQ 1076 >gi|220678249|emb|CAX14272.1| novel protein similar to H.sapiens TARBP1, TAR (HIV-1) RNA binding protein 1 (TARBP1) [Danio rerio] Length = 191 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + + + L+ +K L+LG E +G+ + + G+ ++LNV Sbjct: 111 YWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQLLDVCVEIPQFGVTRSLNV 170 Query: 266 SNAAAVALYITQNH 279 +AA+ ++ Sbjct: 171 HVSAALLVWEYTRQ 184 >gi|292620337|ref|XP_002664256.1| PREDICTED: probable methyltransferase TARBP1-like [Danio rerio] Length = 241 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + + + L+ +K L+LG E +G+ + + G+ ++LNV Sbjct: 161 YWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQLLDVCVEIPQFGVTRSLNV 220 Query: 266 SNAAAVALYITQNH 279 +AA+ ++ Sbjct: 221 HVSAALLVWEYTRQ 234 >gi|296436073|gb|ADH18247.1| putative rRNA methylase (SpoU family) protein [Chlamydia trachomatis G/9768] gi|296437001|gb|ADH19171.1| putative rRNA methylase (SpoU family) protein [Chlamydia trachomatis G/11222] gi|296437934|gb|ADH20095.1| putative rRNA methylase (SpoU family) protein [Chlamydia trachomatis G/11074] gi|297140434|gb|ADH97192.1| putative rRNA methylase (SpoU family) protein [Chlamydia trachomatis G/9301] Length = 151 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 231 LILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 I GAE KGL + A+ ++ M ++LN++ + + +Y Sbjct: 96 YIFGAESKGLPQTVLDAYASQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 145 >gi|325675573|ref|ZP_08155257.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707] gi|325553544|gb|EGD23222.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707] Length = 181 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 43/148 (29%), Gaps = 4/148 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 ++ P N G +R C+ + + + +G H Sbjct: 29 FRVMFHEPRIPPNTGNAIRMVAGTGCELHL--VGPLGFDLSEPKLRRAGLDYHDLASVTV 86 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSM 251 + + ++ + L+ G E GL E T+ Sbjct: 87 HENLEAAWDALRPERVFAFTAHASTSYADLAYQPGDVLLFGPEPTGLAQDVLEDPHVTAQ 146 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNAAAV Y Sbjct: 147 VRIPMVPGRRSLNLSNAAAVVTYEAWRQ 174 >gi|241895530|ref|ZP_04782826.1| hypothetical RNA methyltransferase [Weissella paramesenteroides ATCC 33313] gi|55274184|gb|AAV48972.1| hypothetical RNA methyltransferase [Weissella paramesenteroides] gi|241871232|gb|EER74983.1| hypothetical RNA methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 202 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 2/98 (2%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 + H + L D + + + Q K + G E GL Sbjct: 98 EHISHHRILDYQKLFDRWHEEGYTIYAVDNTPGYELHNVFQVKFPKKSVFLFGEEQIGLA 157 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVA--LYITQ 277 + + A M ++ G +++LNVS A + LY Q Sbjct: 158 DELIQAADQMIYIPQTGSVRSLNVSVAHGIIAALYTAQ 195 >gi|323341718|ref|ZP_08081951.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464143|gb|EFY09336.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 170 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 2/150 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSA-VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I+R+ + + +I + E V + + Sbjct: 1 MIHVVLYEPEIPQNTGNIMRTCVASGAALHLIEPLGFILDEKRVKRSVMDYSDDLNLTRH 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250 + + + T I I L+ G E G+ E Sbjct: 61 LDWESFLKTVKGPVFYLTRYGEYTHSDFDYSAIVETDIYLVFGKESTGIPKSILKENYDH 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN A+ ++ Sbjct: 121 CFRIPMAPNARSMNLSNTVAICVFEVLRQI 150 >gi|187476751|ref|YP_784775.1| RNA methyltransferase [Bordetella avium 197N] gi|115421337|emb|CAJ47842.1| putative RNA methyltransferase [Bordetella avium 197N] Length = 156 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 46/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G +R + + L ++ E P Sbjct: 1 MFHVILVCPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDTRLRRAGLDYHEWQPMKVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250 +L AL + + L++ + + G E GL P+ Sbjct: 61 DDLPAALAATGAPPERIFALTTQGARSAAGMQYQRGDVFVFGRETAGLSPEHVALFAPGQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 121 RLRLPMRPGQRSLNLSNAVAVTVFEAWRQ 149 >gi|329946902|ref|ZP_08294314.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170 str. F0386] gi|328526713|gb|EGF53726.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170 str. F0386] Length = 286 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 84/259 (32%), Gaps = 23/259 (8%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY ++ + R ++ ++ A+ L L + Sbjct: 14 ADYTRLTDVALRRRLETRRGLYMAESSKVITRAVAAGHAP-RSFLMAPRHLDEMRPVIAS 72 Query: 88 PHP---------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNS 132 PV P + ++ I G LA P L+ + + Sbjct: 73 ATGCAGRDDGGDVPVFVAPEEVLESITGFHLHRGALAAMNRPELASVPELLSAARGGAGA 132 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + +L+ + D N+GA RSA A D ++ T R + + + G + + + RI Sbjct: 133 RRVAILEDLVDHTNVGAAFRSAAALGIDAVLVTPRCADPLYRRSVRVSMGTVFQVLWTRI 192 Query: 193 SNLTDALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + + + ++A++LG EG GL +T Sbjct: 193 ERWPAMDELHAQGFTVAALALSENSVALDELAASPVCTDPGSQVAVVLGKEGDGLSHRTI 252 Query: 246 ETATSMAHLHMPGIIKALN 264 A + + M G + +LN Sbjct: 253 AEADEVVRIPMAGAVDSLN 271 >gi|315638690|ref|ZP_07893864.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21] gi|315481314|gb|EFU71944.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21] Length = 154 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G+I R I + ++ + + + Sbjct: 1 MFHIVLVHPRIPQNTGSIGRMCFNAGFKLHIIKPCVFDLSEKAVKRAGLDYWDKLKPMIW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-SM 251 +L + L + ++ SKKP L G+E GL + Sbjct: 61 ESLEEFLGSNLQCKERFFFATTKSKKPYFSVEFRAGDFLFFGSESFGLPNELMNLNEAHQ 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ + + Y Sbjct: 121 ITIPMKPYGRSLNLATSVGIVSYEALRQ 148 >gi|312140792|ref|YP_004008128.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S] gi|311890131|emb|CBH49449.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S] Length = 150 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E GL E T+ + M ++LN+SNAAAV Y Sbjct: 87 YQPGDVLLFGPEPTGLAQDVLEDPHVTAQVRIPMVPGRRSLNLSNAAAVVTYEAWRQ 143 >gi|163788241|ref|ZP_02182687.1| RNA methyltransferase, TrmH family protein [Flavobacteriales bacterium ALC-1] gi|159876561|gb|EDP70619.1| RNA methyltransferase, TrmH family protein [Flavobacteriales bacterium ALC-1] Length = 167 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 61/162 (37%), Gaps = 2/162 (1%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP--SESAVLAKS 179 + + + +V D++++ NIG++ R A AF + +I + ++S Sbjct: 5 HYTSNFKKQKHPITLVCDNISNAPNIGSLFRIADAFGIEELIFCGKDVSLGKRMTKTSRS 64 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 + H I ++ L+ + + + IA+ILG E G Sbjct: 65 TEKYVTHKIEENIKDVIARLKTKNHFLIALEITGNSQDLSQFTLNTKQPIAVILGDENFG 124 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + ++ H++M G ++NV A ++ LY Sbjct: 125 VSDDIINLCDAVIHINMYGNNSSMNVVQATSITLYELTKQLN 166 >gi|149642437|ref|XP_001510423.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 199 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 4/65 (6%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAAVALYI 275 + L++G EG GL + ++ + ++ + I++LNVS AA + L+ Sbjct: 132 CLDFRWDRPTVLVIGNEGSGLSAEVKDACQVLLNVSPGREITSGIESLNVSVAAGIILHS 191 Query: 276 TQNHF 280 + Sbjct: 192 ICSQR 196 >gi|311109231|ref|YP_003982084.1| rRNA methylase SpoU [Achromobacter xylosoxidans A8] gi|310763920|gb|ADP19369.1| SpoU rRNA methylase family protein 2 [Achromobacter xylosoxidans A8] Length = 156 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G +R + + A + ++ E P Sbjct: 1 MFHVILVCPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDARMRRAGLDYHEWQPVRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 L +AL + L++ +++ + + G E GL + Q Sbjct: 61 DTLQEALADTGAAPSSIYALTTHAQRSVADIGFKPGDVFVFGRETAGLSEEHQAMFPPQQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 121 RLRLPMRAGQRSLNLSNAVAVTVFEAWRQ 149 >gi|255551565|ref|XP_002516828.1| rRNA methylase, putative [Ricinus communis] gi|223543916|gb|EEF45442.1| rRNA methylase, putative [Ricinus communis] Length = 216 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYIT 276 A +LG EG GL K E ++ G +LNV+ AA++ L+ Sbjct: 90 HPFKKSTAFLLGNEGTGLSAKECEICDFFVYIPQYGRGTASLNVTVAASIVLHHF 144 >gi|254702266|ref|ZP_05164094.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 5 str. 513] Length = 159 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 1/152 (0%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +L + L + P N G ILR A + L ++ LE R Sbjct: 1 MELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTR 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + G + + LS+ + P + L+ G E G+ + A Sbjct: 61 HPDWNRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADER 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282 + M ++LN + + A+ +K Sbjct: 121 LLIPMVRSARSLNRAVSVAMTTGEALRQIRSK 152 >gi|224418296|ref|ZP_03656302.1| rRNA methylase (SpoU class) [Helicobacter canadensis MIT 98-5491] gi|253827619|ref|ZP_04870504.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491] gi|253511025|gb|EES89684.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491] Length = 163 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 40/156 (25%), Gaps = 2/156 (1%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + Q +VL P N G I R A + L ++ Sbjct: 1 MHQGNKMQFHIVLHQPRIPQNTGNIGRLCFASDSVLHLIHPLGFSITQKELKRAGMDYWN 60 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL-RPKT 244 H+ NL+ ++ + L G E GL Sbjct: 61 HLEVYEWENLSSFMESSLLEIPHCYLTTKSQTPYY-NAPLKKGAYLHFGREDAGLDSTLL 119 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN++ + + LY Sbjct: 120 SHYKDYCYTIPMQNNARSLNLATSVGIVLYEGIRQR 155 >gi|212691896|ref|ZP_03300024.1| hypothetical protein BACDOR_01391 [Bacteroides dorei DSM 17855] gi|212665568|gb|EEB26140.1| hypothetical protein BACDOR_01391 [Bacteroides dorei DSM 17855] Length = 254 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 78/219 (35%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + + R + +S AL+ + + K+ P Sbjct: 2 LTEAQLRQRIELGKGVFIAESPNVISRALDAGYEPLALMCERKHISGSAAHIIKRCGDVP 61 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 V T + + + G L P+L + R+++ ++V+D V D NIGAI R Sbjct: 62 VYTGDRELLATLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIFR 121 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A D ++ T+ + + + G++ +P+ + L K+ Sbjct: 122 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWLDGTIGDLNKLGFRTAAMALT 181 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++A+++G EG+GL KT A Sbjct: 182 DDSISIDHPILAAEPRLAIVMGTEGEGLSYKTIAEADYC 220 >gi|325268414|ref|ZP_08135046.1| SpoU family RNA methylase [Prevotella multiformis DSM 16608] gi|324989268|gb|EGC21219.1| SpoU family RNA methylase [Prevotella multiformis DSM 16608] Length = 191 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + ALILG E KG++ + + + G +LNVS A + ++ Sbjct: 134 DRHYALILGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTAGIVIWEFARRL 188 >gi|257439147|ref|ZP_05614902.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii A2-165] gi|257198398|gb|EEU96682.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii A2-165] Length = 174 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 46/153 (30%), Gaps = 4/153 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L +VL P N G + R+ +C + + L + ++ Sbjct: 7 MSEKPTLNIVLVEPRIPQNTGNVARTCACTACRLHLVGPMGFAIDDKKLKHAGLDYWHYL 66 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 L D + + + + + D L+ G E GL Sbjct: 67 DINYYDGLEDFFARNKGPFYYFT---TKAPQRYTDIQYPDGAYLVFGREDAGLPEALLAA 123 Query: 248 AT-SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN+ AV +Y Sbjct: 124 NQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQ 156 >gi|13507481|gb|AAK28596.1|AF349097_2 hypothetical protein [uncultured bacterium] Length = 207 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K K+A+ G EG G+ E + ++ M GI+++LN+ ++ + LY Sbjct: 125 HEADYTKYTKLAVWFGTEGTGISQVALERSELCVNIPMVGIVESLNLGTSSGIVLYEITK 184 Query: 279 HF 280 Sbjct: 185 QR 186 >gi|311271147|ref|XP_001927654.2| PREDICTED: probable methyltransferase TARBP1 isoform 1 [Sus scrofa] Length = 1628 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q +K L+LG E +G+ + + GII++LNV + A+ ++ Sbjct: 1561 QFCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1618 >gi|163791737|ref|ZP_02186126.1| rRNA methylase [Carnobacterium sp. AT7] gi|159872997|gb|EDP67112.1| rRNA methylase [Carnobacterium sp. AT7] Length = 84 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 26/44 (59%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L++G EG G+ + + T ++ + G ++LNV+ AA V ++ Sbjct: 35 LVMGNEGNGMSAELLKRTTKNLYIPIVGQAESLNVAVAAGVVMF 78 >gi|34762434|ref|ZP_00143434.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887902|gb|EAA24970.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 150 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 1/100 (1%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G + + G + ++ +K+ + ++ G E +G+ Sbjct: 47 GMDYWHLVDLKIWESFEEFLETNKGIRLFYATTKTKQKYCDVKYEENDYIMFGPESRGIP 106 Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M + ++LN+SN+A + LY Sbjct: 107 EDILNKNPERCVTIPMIPMGRSLNLSNSAVIILYEAYRQL 146 >gi|302764152|ref|XP_002965497.1| hypothetical protein SELMODRAFT_67834 [Selaginella moellendorffii] gi|302802440|ref|XP_002982974.1| hypothetical protein SELMODRAFT_47811 [Selaginella moellendorffii] gi|300149127|gb|EFJ15783.1| hypothetical protein SELMODRAFT_47811 [Selaginella moellendorffii] gi|300166311|gb|EFJ32917.1| hypothetical protein SELMODRAFT_67834 [Selaginella moellendorffii] Length = 157 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 48/156 (30%), Gaps = 9/156 (5%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P N G R+ A + E + L ++ ++I Sbjct: 1 LQVVLVSPQIPGNTGTTARTCAAVLAGLHLVKPLGFSIEDSKLKRAGLDYWKYIVVKVHE 60 Query: 194 NLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS- 250 + L + + K L+ G+E GL P+ E ++ Sbjct: 61 SWPHFLDYFRQQEGEKRLIAYTKTGKCSYLDMSYKPGDWLVFGSETDGLAPEIHEECSTG 120 Query: 251 -----MAHLHMPGI-IKALNVSNAAAVALYITQNHF 280 + M ++ LN+S + + +Y Sbjct: 121 VHAGGTVRIPMNDAFVRCLNLSVSVGIGVYEALRQL 156 >gi|197301465|ref|ZP_03166545.1| hypothetical protein RUMLAC_00197 [Ruminococcus lactaris ATCC 29176] gi|197299503|gb|EDY34023.1| hypothetical protein RUMLAC_00197 [Ruminococcus lactaris ATCC 29176] Length = 169 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 34/99 (34%), Gaps = 1/99 (1%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G + + + G + ++ + K + ++ G E G+ Sbjct: 48 GMDYWKDLDVTTYINYQDFLDKNPGAKIYMATTKAHKVYTEVDYEQDCYIMFGKESAGIP 107 Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + M G I++LN+ N+ A+ LY Sbjct: 108 EEILVDHEEDCMRIPMIGDIRSLNLGNSVAIVLYEALRQ 146 >gi|60416311|sp|P69001|TRML_LISIN RecName: Full=Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase lin0934 gi|313624393|gb|EFR94411.1| RNA methyltransferase, TrmH family, group 2 [Listeria innocua FSL J1-023] Length = 169 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + ++ +L ++ +++ Sbjct: 1 MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 +L + +K F I ++ N + G E GL + + Sbjct: 61 YDSLDEFFEKNAGGEFYYITKFGRHVYSDVDYSDPNKNYFFVFGKETTGLPDELLQANEE 120 Query: 251 -MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN AAV Y Sbjct: 121 NCLRIPMTDHIRSLNLSNTAAVLAYEALRQ 150 >gi|225432460|ref|XP_002278797.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147777374|emb|CAN73835.1| hypothetical protein VITISV_043470 [Vitis vinifera] gi|297736948|emb|CBI26149.3| unnamed protein product [Vitis vinifera] Length = 217 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 1/96 (1%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 S L +D+ + Q A +LG EG GL Sbjct: 49 STSHLRFRHFHSLLDARHFLKEKDCDICGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLS 108 Query: 242 PKTQETATSMAHLHMP-GIIKALNVSNAAAVALYIT 276 K E ++ G +LNV+ AA++ L+ Sbjct: 109 VKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHF 144 >gi|56551848|ref|YP_162687.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis ZM4] gi|241761830|ref|ZP_04759916.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56543422|gb|AAV89576.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis ZM4] gi|241373744|gb|EER63304.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 152 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 45/139 (32%) Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + P G + +C G+ + +++ D Sbjct: 5 LFQPDIAGNVGTILRTAACFGVGVDIIEPCGFAFSDRALKRAGMDYAKIAPPVRHNDWNS 64 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + + + L++ PL + L+ G+E G + A+ + + Sbjct: 65 FLSTRPERRVLLTTAGDIPLPEMTFQPDDILLFGSESAGAPDFVHQAASHQVRIPLLADF 124 Query: 261 KALNVSNAAAVALYITQNH 279 ++LN++ +A +AL Sbjct: 125 RSLNIAVSAGIALAEALRQ 143 >gi|256818854|ref|YP_003140133.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] gi|256580437|gb|ACU91572.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] Length = 180 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 71/160 (44%), Gaps = 3/160 (1%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + L+++LD+V +NIG++ R+ AF + I + + + K+A GA + Sbjct: 17 FKKAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTALGATD 76 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRP 242 + + + N A++K+ I + + + + K A+I G E KG+ Sbjct: 77 SVAWEYVENTLSAVEKLKEQDVYIISIEQAENSTMLNDFQPNGKQKYAIIFGNEVKGVEQ 136 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + T+ + + G +LN+S +A +A++ K Sbjct: 137 EVVSTSDEVIEIPQYGTKHSLNISVSAGIAIWELAMKLRK 176 >gi|89094922|ref|ZP_01167853.1| Predicted rRNA/tRNA methylase, SpoU family protein [Oceanospirillum sp. MED92] gi|89080788|gb|EAR60029.1| Predicted rRNA/tRNA methylase, SpoU family protein [Oceanospirillum sp. MED92] Length = 156 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L ++ H Sbjct: 1 MLHVVLFEPEIPPNTGNIIRLCANTGFHLHLVEPLGFELDDKRLRRAGLDY--HEFAAVK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-- 250 + + L++ + + L+LG E +GL + + T Sbjct: 59 IHPDLETCLSQIEPRKVWALTTKGRTSHVEADFQAGDVLLLGPETRGLPEEVRMTIPQGE 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ +Y Sbjct: 119 WLRMPMKADSRSLNLSNACAIVVYEAWRQL 148 >gi|296126080|ref|YP_003633332.1| tRNA/rRNA methyltransferase (SpoU) [Brachyspira murdochii DSM 12563] gi|296017896|gb|ADG71133.1| tRNA/rRNA methyltransferase (SpoU) [Brachyspira murdochii DSM 12563] Length = 162 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 1/152 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 N + + L P N G I R V + + I +K S + ++ EH+ Sbjct: 8 NNFNIAIALYRPEIPANTGNIGRLCVGLNIELHIVSKPSFIISSKEVRRAGLDYWEHLVL 67 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-A 248 I+ N L+ ++ + I ++ K ++ ++ L+ G E GLR E Sbjct: 68 IKHENENTFLEYCNNNDRRIIPITKFGKNRYDEFNYSNNDILLFGRESTGLRESLWENDL 127 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + ++ M I+++N+SN AA+ Y H Sbjct: 128 DNSIYIPMSDNIRSINLSNTAAITAYEAYRHI 159 >gi|317504477|ref|ZP_07962455.1| SpoU family RNA methylase [Prevotella salivae DSM 15606] gi|315664420|gb|EFV04109.1| SpoU family RNA methylase [Prevotella salivae DSM 15606] Length = 183 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A++ G E KG++ + + + G +LNVS A + ++ Sbjct: 130 AVVFGNEVKGVKQEVVNMSDGCLEIPQFGTKHSLNVSTTAGIVMWEFTRKL 180 >gi|293374181|ref|ZP_06620512.1| putative RNA methyltransferase, TrmH family, group 2 [Turicibacter sanguinis PC909] gi|325845359|ref|ZP_08168659.1| RNA methyltransferase, TrmH family, group 2 [Turicibacter sp. HGF1] gi|292647210|gb|EFF65189.1| putative RNA methyltransferase, TrmH family, group 2 [Turicibacter sanguinis PC909] gi|325488613|gb|EGC91022.1| RNA methyltransferase, TrmH family, group 2 [Turicibacter sp. HGF1] Length = 173 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 54/150 (36%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +V + P N G I+R+ A + + + ++ + + + Y+ Sbjct: 1 MAIHLVQFNPEIPQNTGNIMRTCAATDIKLHLIKPMGFTLDEKSIKRAGANYVNEVDYVV 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQE-TAT 249 N + ++K F ++ ++LGAE G+ + Sbjct: 61 YENWDEFVEKNKGGKFCFCTRYGQKNHTEMDFSNPEEDYYIVLGAESCGIPKEILRPYFE 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M +++LNVSN AA+ Y Sbjct: 121 NCFRIPMTNKVRSLNVSNVAAILAYEALRQ 150 >gi|226506254|ref|NP_001145273.1| hypothetical protein LOC100278565 [Zea mays] gi|195653915|gb|ACG46425.1| hypothetical protein [Zea mays] Length = 286 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 31/64 (48%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + PL++ D+ L+LG E +G+ + + G++++LNV + A+A++ Sbjct: 218 NSMPLDRFGFPDRTVLVLGREKEGIPVDIIHILDACVEIPQLGVVRSLNVHVSGAIAVWE 277 Query: 276 TQNH 279 Sbjct: 278 YTRQ 281 >gi|86132670|ref|ZP_01051263.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|85816912|gb|EAQ38097.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 150 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 4/151 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL + P+N G I R A+ C + + L ++ +H+ Sbjct: 1 MLNIVLINPEIPNNTGNIGRLALGSGCRLHLVKPFGFKIDDTRLKRAGLDYWQHLDVQYY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSM 251 N D +K + + LSS K + + L+ G E KGL + E + Sbjct: 61 DNTEDFFKK--NAFAKMAFLSSHGTKSHYDIPFEEDLFLVFGKESKGLPKEITEKHPDQL 118 Query: 252 AHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 + + I++LN++NA + Y Sbjct: 119 YKIPLFSEHIRSLNLANAVGIVAYEGIRQLN 149 >gi|313114962|ref|ZP_07800457.1| RNA methyltransferase, TrmH family, group 2 [Faecalibacterium cf. prausnitzii KLE1255] gi|310622722|gb|EFQ06182.1| RNA methyltransferase, TrmH family, group 2 [Faecalibacterium cf. prausnitzii KLE1255] Length = 168 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 4/153 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L +VL P N G + R+ +C + + L + ++ Sbjct: 1 MNEKPTLNIVLVEPRIPQNTGNVARTCACTACRLHLVGPMGFAIDDKKLKHAGLDYWHYL 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +L + K + + + + D L+ G E GL Sbjct: 61 DISYYDSLDEFFAKNSGPYYYFT---TKAPQRYTDVSYPDGAYLVFGREDAGLPEALLAA 117 Query: 248 AT-SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN+ AV +Y Sbjct: 118 NQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQ 150 >gi|293602335|ref|ZP_06684781.1| RNA methyltransferase [Achromobacter piechaudii ATCC 43553] gi|292819097|gb|EFF78132.1| RNA methyltransferase [Achromobacter piechaudii ATCC 43553] Length = 156 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G +R + + A + ++ E P Sbjct: 1 MFHVILVCPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDARMRRAGLDYHEWQPVRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 L +AL + L++ +++ + + G E GL + Q Sbjct: 61 DTLQEALDDTGADAGSIYALTTHAQRSVADIAFKPGDVFVFGRETAGLSDEHQAMFPPQQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 121 RLRLPMRAGQRSLNLSNAVAVTVFEAWRQ 149 >gi|255327010|ref|ZP_05368086.1| RNA methyltransferase, TrmH family, group 2 [Rothia mucilaginosa ATCC 25296] gi|255296227|gb|EET75568.1| RNA methyltransferase, TrmH family, group 2 [Rothia mucilaginosa ATCC 25296] Length = 155 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G E GL + Q+ T + M ++LN++N+A++A++ Sbjct: 91 YRPGDVFMFGPESVGLPAEVQQDPHVTERVKIPMKPGRRSLNLANSASIAIFEAWRQ 147 >gi|237843303|ref|XP_002370949.1| RNA methyltransferase, putative [Toxoplasma gondii ME49] gi|211968613|gb|EEB03809.1| RNA methyltransferase, putative [Toxoplasma gondii ME49] gi|221481851|gb|EEE20221.1| RNA methyltransferase, putative [Toxoplasma gondii GT1] gi|221502350|gb|EEE28083.1| RNA methyltransferase, putative [Toxoplasma gondii VEG] Length = 840 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 3/146 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ L V N+G ++R+A A DG+ + + + + + G ++P+ S Sbjct: 657 ILALGGVRYVWNVGILVRTAAALGFDGVYYVDGTADPFNWKVMEISRGLHYNLPHFHGSV 716 Query: 195 LT--DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 ++ + K+ I ILG E GL + Sbjct: 717 ENLLRMCEESDLLPIAADTTGERPEAFQGAVTKHRGICCILGNESHGLSELILQRC-RRV 775 Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278 L M ++ +LNV A + +Y + Sbjct: 776 ALPMSSLLDSLNVGIAGGIVMYEMKK 801 >gi|295101681|emb|CBK99226.1| Predicted rRNA methylase (SpoU class) [Faecalibacterium prausnitzii L2-6] Length = 168 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 6/154 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L +VL P N G + R+ +C + + L + ++ Sbjct: 1 MSEKPTLNIVLVEPRIPQNTGNVARTCACTACRLHLVGPMGFAIDDKKLKHAGLDYWHYL 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +L D K + + + + D L+ G E GL Sbjct: 61 DISYYDSLDDFFSKNDGPFYYFT---TKAPRRYTDVAYPDGAYLVFGREDAGLPEALLA- 116 Query: 248 AT--SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A + M ++LN+SN+ AV +Y Sbjct: 117 ADQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQ 150 >gi|240140185|ref|YP_002964662.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens AM1] gi|240010159|gb|ACS41385.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens AM1] Length = 269 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 78/242 (32%), Gaps = 7/242 (2%) Query: 45 QPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + + G T+ + + +L D PV + Sbjct: 29 RQGRFIVEGEVTLRLLFSGSARFAAESVLLAPERWPGFA-DLLSGDGPPVYLAGKDVMSA 87 Query: 104 IVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + G V P + + L++ L + + N+G + R+A AF D Sbjct: 88 VAGFPIHRGVLAVGLRGEEPSPEALIPSAPAPALVVGLVGLTNHDNVGGLFRNAAAFGAD 147 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 + + ++GA +P+ R + L + L+ + L Sbjct: 148 AVWLDAETCDPLYRKAIRVSAGAALTVPFARAPSGAALLDLAERHALTPLALTPGGSETL 207 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NH 279 + + L+LG EG GL A + M +LNV+ A A+AL+ Sbjct: 208 DALEPPARALLLLGTEGPGLPESLMARA-RRVRIAMAPGFDSLNVATAGAIALHHLAGRR 266 Query: 280 FA 281 F+ Sbjct: 267 FS 268 >gi|225026878|ref|ZP_03716070.1| hypothetical protein EUBHAL_01132 [Eubacterium hallii DSM 3353] gi|224955802|gb|EEG37011.1| hypothetical protein EUBHAL_01132 [Eubacterium hallii DSM 3353] Length = 163 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268 ++ SK+ D ++ G E G+ + E + + M I++LN+ N+ Sbjct: 76 YMATTKSKQTYTDVEYEDGCYIMFGKESAGIPEEILLEHKETAVRIPMLEHIRSLNLGNS 135 Query: 269 AAVALYITQNH 279 A+ LY Sbjct: 136 VAIVLYEALRQ 146 >gi|33866165|ref|NP_897724.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 8102] gi|33639140|emb|CAE08146.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 8102] Length = 278 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 87/268 (32%), Gaps = 17/268 (6%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R + K+++S + ++ + L H + + + + + Sbjct: 4 SRRNPLVKRLRSLSSRAGREEEGLLLLEG-THLLQELVRLKLQPAELIATERWYQRHAQL 62 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 + P + V + + + +L L +++ L+VLD + D Sbjct: 63 LVGVNQAIPRRLVTDEVLTAALSTVTPDGVASLCPYSALPLA---PKDAHFLLVLDRIQD 119 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--- 200 P N+G +LR+A+A + P S L SA L+ + + A+ Sbjct: 120 PGNLGTLLRTALAADVQNVWLGSGVDPLGSKSLRASAGALLQLPHHRFGPDEDTAISQLT 179 Query: 201 ----------KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 P + AL+LG EG GL P+ T Sbjct: 180 DELKRLAAGGMQVVATLVPGSQVPIRPVPYWELNWRLPTALVLGTEGAGLHPELLACCTH 239 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278 L +++LNV+ AA L + Sbjct: 240 AVTLPHSSRVESLNVAAAAVPLLLERRR 267 >gi|329963702|ref|ZP_08301148.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057] gi|328527712|gb|EGF54704.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057] Length = 216 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 69/159 (43%), Gaps = 3/159 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 R L++VLD++ HNIG++ R++ AF + I + + K+A GA Sbjct: 56 EFKEARKLPLVIVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 115 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + ++N +A+ + G+ + + E K K A+++G E KG++ Sbjct: 116 FTVDWKYVNNSVEAVDNLKKEGYVVYSVEQAEGSIMLDELTLDKTKKYAIVMGNEVKGVQ 175 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + + G +LNVS A + ++ Sbjct: 176 QEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFKKL 214 >gi|225077352|ref|ZP_03720551.1| hypothetical protein NEIFLAOT_02412 [Neisseria flavescens NRL30031/H210] gi|224951344|gb|EEG32553.1| hypothetical protein NEIFLAOT_02412 [Neisseria flavescens NRL30031/H210] Length = 154 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R D + P +S+ + ++ H Sbjct: 1 MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDY--HEFAKLT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + G + L++ ++ + L+ G E +GL + + A Sbjct: 59 VHENFDDCLKALEGRRIFALTTKGSTRPDEVSFREGDVLLFGPETRGLPAEVLDNLPAGQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++N+SN AV L+ Sbjct: 119 KIRLPMMPDSRSMNLSNTVAVILFEAWRQ 147 >gi|153869173|ref|ZP_01998846.1| tRNA/rRNA methyltransferase, SpoU [Beggiatoa sp. PS] gi|152074284|gb|EDN71155.1| tRNA/rRNA methyltransferase, SpoU [Beggiatoa sp. PS] Length = 241 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 24/84 (28%) Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + + + +AL+ G E GL K + + + Sbjct: 73 CHLVFGTSTRQRMIAWPVLTPIACAEKALECPKPVALVFGREQSGLTNKELDLCNYLVQI 132 Query: 255 HMPGIIKALNVSNAAAVALYITQN 278 +LNV+ A + Y + Sbjct: 133 PTNSEFNSLNVAAAVQILSYELRK 156 >gi|159903443|ref|YP_001550787.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9211] gi|159888619|gb|ABX08833.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus str. MIT 9211] Length = 162 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 10/153 (6%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + L + L P N G I R+ AF + +S +L ++ Sbjct: 4 KPHHLKVALFEPRIPQNTGNIGRTCAAFQIPLHLIKPLGFSLDSKLLKRAGLDYW--DFI 61 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 ++ + K+H + IG S PL + + L+ G E GL +E Sbjct: 62 DLTTHENFSAFKIHISDKRLIGFSKKDGIPLNKITFKPEDVLLFGREDTGLPEDIREACD 121 Query: 250 SMAHLHMPGI--------IKALNVSNAAAVALY 274 M + MPG +++LN+S+A A+A Y Sbjct: 122 LMVSIPMPGKADSDGSNGVRSLNLSSACAIASY 154 >gi|257068792|ref|YP_003155047.1| putative rRNA methylase SpoU family [Brachybacterium faecium DSM 4810] gi|256559610|gb|ACU85457.1| predicted rRNA methylase SpoU family [Brachybacterium faecium DSM 4810] Length = 155 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVA 272 + + + L+ G E GL + TS + M ++LN++NA +VA Sbjct: 81 HTDVTFDSIDYTREDVLLFGTEPTGLPEEVMSHPRITSRVRIPMLPARRSLNLANAVSVA 140 Query: 273 LYITQNHF 280 +Y Sbjct: 141 VYEAWRQL 148 >gi|221060168|ref|XP_002260729.1| rRNA methylase [Plasmodium knowlesi strain H] gi|193810803|emb|CAQ42701.1| rRNA methylase, putative [Plasmodium knowlesi strain H] Length = 2247 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 55/183 (30%), Gaps = 5/183 (2%) Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + D I V+ + +L++V ++ N+ + R+ F Sbjct: 2065 KKFDPISDIIQVNN---EFRRTYHQLAKTKTKKKKLIVVASLIDKIPNLAGLCRTCEIFK 2121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDS 216 +I + S++ +I + Sbjct: 2122 VQKLILHNANIVKDFQFQKISSTANKWMNIGEVKKGEILKYLMDKRKKNYSIVGLEQTKC 2181 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 PL +K LILG E +GL + GII++LNV +AA+ +Y Sbjct: 2182 SVPLNNFTFPEKTVLILGDEKEGLPASVLLFLHHCIEIPGKGIIRSLNVHVSAAITIYEY 2241 Query: 277 QNH 279 Sbjct: 2242 FRQ 2244 >gi|1903046|emb|CAB07516.1| hypothetical 13.6 kd protein [Bacillus subtilis subsp. subtilis str. 168] Length = 114 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 1/77 (1%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKALN 264 F + ++ + G E GL + L M +++LN Sbjct: 33 FFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNNMDRCLRLPMTEHVRSLN 92 Query: 265 VSNAAAVALYITQNHFA 281 +SN AA+ +Y Sbjct: 93 LSNTAAILVYEALRQQN 109 >gi|260752590|ref|YP_003225483.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551953|gb|ACV74899.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 152 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 45/139 (32%) Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 + P G + +C G+ + +++ D Sbjct: 5 LFQPDIAGNVGTILRTAACFGVGVDIIEPCGFAFSDRALKRAGMDYAKIAPPVRHNDWNS 64 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + + + L++ PL + L+ G+E G + A+ + + Sbjct: 65 FLSARPERRVLLTTAGDIPLPEMTFQPDDILLFGSESAGAPDFVHQAASHQVRIPLLADF 124 Query: 261 KALNVSNAAAVALYITQNH 279 ++LN++ +A +AL Sbjct: 125 RSLNIAVSAGIALAEALRQ 143 >gi|13472427|ref|NP_103994.1| RNA methyltransferase [Mesorhizobium loti MAFF303099] gi|14023173|dbj|BAB49780.1| RNA methyltransferase [Mesorhizobium loti MAFF303099] Length = 152 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 52/150 (34%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N +L + L + N G ILR A I P L ++ LE Sbjct: 2 NRRLRIALYQPDIAGNTGTILRFAACLGLGVDIIEPAGFPLSDKALKRAGMDYLEMAALT 61 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R + + G + + LS+ + P D L+ G E G+ + A + Sbjct: 62 RHVDWNAFEDRRKKDGRRLVLLSTKAATPYTNFSFADGDILLFGRESAGVPDPVHQAADA 121 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M G +++NV+ + A+ Sbjct: 122 RLTIPMQGSARSINVALSVAMVAGEAIRQL 151 >gi|163789140|ref|ZP_02183583.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteriales bacterium ALC-1] gi|159875553|gb|EDP69614.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteriales bacterium ALC-1] Length = 218 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 1/145 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R + + V HN A++RS F + + + + + Sbjct: 28 QRTKHFTVATEDVYQLHNASAVMRSCDVFGIQELNIVEEVNSKSIDREIAMGAQKWVDLN 87 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + K + ++ L K G E +GL + + A Sbjct: 88 RFHSTKSCIDHLKTKGYQIVATTPHAE-DCDLIDFDITKKSCFFFGRETEGLSQQVIDEA 146 Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273 + M G ++LN+S +AA+ L Sbjct: 147 DCFLKIPMVGFTESLNISVSAAIIL 171 >gi|309389081|gb|ADO76961.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium praevalens DSM 2228] Length = 161 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 27/96 (28%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + + ++ + + G E GL Sbjct: 50 YWDKLDVKYYDNLTDFFIKNKDGRFFYATTKAPNSYSDLEYEADDYFLFGKETAGLPESL 109 Query: 245 QE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E + M +++LN+SN+ ++ +Y Sbjct: 110 LESNLDKAIRIPMKDDLRSLNLSNSVSIIIYEALRQ 145 >gi|297616863|ref|YP_003702022.1| RNA methyltransferase, TrmH family, group 2 [Syntrophothermus lipocalidus DSM 12680] gi|297144700|gb|ADI01457.1| RNA methyltransferase, TrmH family, group 2 [Syntrophothermus lipocalidus DSM 12680] Length = 152 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + ++ G E +GL + E + S+ + M I ++LN+SNA AV L+ Sbjct: 83 QRYTDVRYKKGDFIVFGKETQGLPGELLERFSQSLIRIPMVDIGRSLNLSNAVAVVLFEA 142 Query: 277 QNH 279 Sbjct: 143 LRQ 145 >gi|311694375|gb|ADP97248.1| RNA methyltransferase, TrmH family, group 1 [marine bacterium HP15] Length = 287 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 25/71 (35%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + ++ + + +A++ G E GL + H+ +LN++ Sbjct: 100 PWPVCAPPEAAAAAAEHAGSGPVAMVFGRENHGLSNDELQRCHYHIHIPSNPDYSSLNLA 159 Query: 267 NAAAVALYITQ 277 A V Y + Sbjct: 160 MAVQVMCYELR 170 >gi|227487011|ref|ZP_03917327.1| SpoU family rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227093085|gb|EEI28397.1| SpoU family rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] Length = 134 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 2/68 (2%) Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKT--QETATSMAHLHMPGIIKALNVSNAAAVA 272 L L+ G E GL + + T + M +++N+SNAAAVA Sbjct: 61 HCSNMLFDVRFAPGDVLLFGTEPTGLTDEAMNHDRVTQKVRIPMLEGRRSMNLSNAAAVA 120 Query: 273 LYITQNHF 280 Y Sbjct: 121 TYEAWRQL 128 >gi|325662860|ref|ZP_08151429.1| hypothetical protein HMPREF0490_02169 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086576|ref|ZP_08335654.1| hypothetical protein HMPREF0987_01957 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470912|gb|EGC74141.1| hypothetical protein HMPREF0490_02169 [Lachnospiraceae bacterium 4_1_37FAA] gi|330410409|gb|EGG89841.1| hypothetical protein HMPREF0987_01957 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 165 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 1/99 (1%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G + + + G + ++ + ++ G E G+ Sbjct: 48 GMDYWDQLDVTTYIDYNDFLEKNPGAKIYMATTKAPNVYTDVKYEPDCYIMFGKESAGIP 107 Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M G I++LN+ N+ A+ LY Sbjct: 108 EEILVHHKEDSIRIPMVGDIRSLNLGNSVAIVLYEALRQ 146 >gi|170718519|ref|YP_001783729.1| RNA methyltransferase [Haemophilus somnus 2336] gi|168826648|gb|ACA32019.1| RNA methyltransferase, TrmH family, group 2 [Haemophilus somnus 2336] Length = 161 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 4/151 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDY--HEFAQIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + T + L++ Q L+ G E +G+ + T Sbjct: 59 KHKTFNEFLNTEQPNRLFALTTKGTPAHSQVNFELGDYLMFGPETRGIPMPILDNLPTTQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M +++N+SNA AV +Y Sbjct: 119 KIRIPMIENSRSMNLSNAVAVTVYEAWRQLN 149 >gi|297661624|ref|XP_002809335.1| PREDICTED: probable methyltransferase TARBP1-like [Pongo abelii] Length = 348 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q +K L+LG E +G+ + + GII++LNV + A+ ++ Sbjct: 281 QYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 338 >gi|262201698|ref|YP_003272906.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247] gi|262085045|gb|ACY21013.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247] Length = 154 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++ P N G +R A C+ + A + ++ H Sbjct: 1 MFRIMFYQPCIPPNTGNAIRLAANTGCELHLIEPLGFSMSDAQVKRAGLDY--HEMATVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + ++ +++ L+ G E GL T Sbjct: 59 VHPNLVTAWTTLKPERVFAFTAHAERFHTDVDYAPGDVLLFGPEPTGLPDDVLAEPEITD 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++ N++NAA++A+Y Sbjct: 119 RVRIPMLAGRRSHNLANAASIAVYEAWRQ 147 >gi|239917979|ref|YP_002957537.1| rRNA methylase, putative, group 2 [Micrococcus luteus NCTC 2665] gi|239839186|gb|ACS30983.1| rRNA methylase, putative, group 2 [Micrococcus luteus NCTC 2665] Length = 186 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ L+ G E GL + T L M ++LN++NA ++A+Y Sbjct: 111 HDRVAYRPGDVLLFGRESTGLPEEVLADPRVTETVCLPMQPARRSLNLANAVSIAVYEAW 170 Query: 278 NH 279 Sbjct: 171 RQ 172 >gi|112491246|pdb|2HA8|A Chain A, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding Protein 1 gi|112491247|pdb|2HA8|B Chain B, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding Protein 1 Length = 184 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q +K L+LG E +G+ + + GII++LNV + A+ ++ Sbjct: 117 QYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 174 >gi|330007674|ref|ZP_08306014.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3] gi|328535397|gb|EGF61878.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3] Length = 131 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 26/65 (40%) Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + PL + K+ L LG E GL +A + G +++LNVS A V L Sbjct: 64 HNGTPLFKAELPKKMVLALGQERDGLSDAAISSADLSVAIDGTGNVESLNVSVATGVLLA 123 Query: 275 ITQNH 279 Sbjct: 124 EWWRQ 128 >gi|291279760|ref|YP_003496595.1| rRNA methylase [Deferribacter desulfuricans SSM1] gi|290754462|dbj|BAI80839.1| rRNA methylase [Deferribacter desulfuricans SSM1] Length = 157 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 4/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++ L P N G I R ++ + L ++ ++ + I Sbjct: 1 MIVALFEPEIPQNTGNIARLCAVTDTKLLLVGRLGFSISDKYLKRAGMDYWNYLDWEWIK 60 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQE-TAT 249 ++ + K ++ + +S KK +E +K LI G E GLR + + Sbjct: 61 SINEFFDKYNNKEYSYFFISKFGKKYYTEISREFNFNKSILIFGNESYGLREDIRNLYSD 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276 + + M +++LN+SN+ A+ +Y Sbjct: 121 RLYRIPMKEGMRSLNLSNSVAIVVYHL 147 >gi|262040314|ref|ZP_06013565.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042423|gb|EEW43443.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 131 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 26/65 (40%) Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + PL + K+ L LG E GL +A + G +++LNVS A V L Sbjct: 64 HNGTPLFKAELPKKMVLALGQERDGLSDAAISSADLSVAIDGTGNVESLNVSVATGVLLA 123 Query: 275 ITQNH 279 Sbjct: 124 EWWRQ 128 >gi|317471039|ref|ZP_07930414.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA] gi|316901480|gb|EFV23419.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA] Length = 166 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSA-VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ + +I + +E + Sbjct: 1 MLHIVLHEPEMPANTGNIGRTCVACGAVLHLIEPLGFKLNEKMIKRAGLDYWEHLDVRTY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250 ++ + H + S + + ++ + L+ G E G+ + + + Sbjct: 61 VNFEDFLEKNHHPKIYMATTKSRQTYADVTYGGADEDVYLMFGKESAGIPEEILLDYKET 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN+ A+ Y Sbjct: 121 AVRIPMLPEIRSLNLSNSVAIVAYEVLRQ 149 >gi|325120007|emb|CBZ55560.1| rRNA methylase, related [Neospora caninum Liverpool] Length = 513 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 3/146 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ L V N+G ++R+A + DG+ + S + + + G ++P+ S Sbjct: 329 ILALCGVRYVWNVGILVRTAASLGFDGVYYVDGTADPFSWKVMEVSRGLHYNLPHFHGSA 388 Query: 195 LT--DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 ++ + + + I ILG E +GL + Sbjct: 389 ENLLRMCEESDLLPIAADISGERPEAFHGAVMSHRGICCILGNESRGLSEVILQHC-RRV 447 Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278 L M ++ +LNV A + +Y + Sbjct: 448 ALPMSSLLDSLNVGIAGGIVMYEMKK 473 >gi|270285622|ref|ZP_06195016.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg] Length = 104 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 231 LILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 I GAE +GL + ++ ++ M ++LN++ + + +Y Sbjct: 49 YIFGAESRGLPQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 98 >gi|144899702|emb|CAM76566.1| rRNA methylase (SpoU class) [Magnetospirillum gryphiswaldense MSR-1] Length = 156 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 54/147 (36%), Gaps = 3/147 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L + L + P N GA+LR + I + ++++ + R++ Sbjct: 4 LRLALFQPDIPQNAGALLRLSACLGIPLEIIEP---CGFLWDEKRMRRAGMDYVDHARVT 60 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 G + + L++ L+ +++G E G+ P+ A Sbjct: 61 RHASWNAFRQKPGGRLVLLTTAGGTRLDGFSFRPGDVIMMGRESAGVPPEVAAEADVTVR 120 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++LNV+ AA +A+ Sbjct: 121 IPMAPGLRSLNVALAATLAVGEGLRQL 147 >gi|121603783|ref|YP_981112.1| RNA methyltransferase [Polaromonas naphthalenivorans CJ2] gi|120592752|gb|ABM36191.1| RNA methyltransferase, TrmH family, group 2 [Polaromonas naphthalenivorans CJ2] Length = 159 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R A C + + + ++ E+ +R Sbjct: 1 MFNIVLVEPEIPPNTGNVIRLAANTGCRLHLVEPLGFSMDDKHMRRAGLDYHEYAQVLRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 ++ L+ + L++ + + L+ G+E KGL P+ ++ Sbjct: 61 ASWPAFLESQQPPADRLFALTTQGAGSMYEARFLPGDWLVFGSETKGLAPEVRQSFALAR 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN AV ++ Sbjct: 121 RLKVPMLPGQRSLNLSNTVAVTVFEAWRQ 149 >gi|3023080|gb|AAC12641.1| putative rRNA methylase [Synechococcus sp. PCC 7002] Length = 62 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHF 280 D L+ G+E K + + + + +++LN+S +AAV L+ + Sbjct: 2 FTYQDDDWLLFGSETKASPQXLLQRCDATLTIPINKTHVRSLNLSVSAAVGLFEVRRQL 60 >gi|15835441|ref|NP_297200.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg] gi|270289632|ref|ZP_06195934.1| spoU rRNA methylase family protein [Chlamydia muridarum Weiss] gi|301337018|ref|ZP_07225220.1| spoU rRNA methylase family protein [Chlamydia muridarum MopnTet14] gi|8163329|gb|AAF73607.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg] Length = 151 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 231 LILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 I GAE +GL + ++ ++ M ++LN++ + + +Y Sbjct: 96 YIFGAESRGLPQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 145 >gi|237736752|ref|ZP_04567233.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817] gi|229420614|gb|EEO35661.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817] Length = 152 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + + G + ++ +K+ + ++ G E +G+ + Sbjct: 50 YWHLVDLVVWESYEEFVEANKGARIFYATTKTKQRYSDIEFKENDFVMFGPESRGIPEEI 109 Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M + ++LN+SN+AA+ LY Sbjct: 110 LNAHKENCITIPMIDMGRSLNLSNSAAIILYEALRQ 145 >gi|149179294|ref|ZP_01857856.1| spoU rRNA Methylase family protein [Planctomyces maris DSM 8797] gi|148841868|gb|EDL56269.1| spoU rRNA Methylase family protein [Planctomyces maris DSM 8797] Length = 158 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 3/148 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VL + P N G I R+ VA + ++ L ++ +H+ + + Sbjct: 9 IHVVLYQPDIPQNTGNIGRTCVAVGAKLWLVRPLGFQLDAKHLRRAGMDYWQHLNWEAVD 68 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMA 252 +L + ++ + + + + + + G+E GL P+ E S Sbjct: 69 SLAEVQSQLQDRTWWKLTKFA--TRYVWDAELEPGQVFLFGSESNGLPPRILEEDPDSNL 126 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 L M +++LN+++ A +Y F Sbjct: 127 KLPMHQEVRSLNLASTATAVMYEAVRQF 154 >gi|326385630|ref|ZP_08207264.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM 19370] gi|326209964|gb|EGD60747.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM 19370] Length = 150 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 23/59 (38%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E G+ + T+ + M ++++N++ +A +AL Sbjct: 86 YDFAFRPDDILLFGKESAGVPAPVSDACTARIRIPMRPEVRSMNLAMSAGLALGEALRQ 144 >gi|262065869|ref|ZP_06025481.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum ATCC 33693] gi|291380456|gb|EFE87974.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum ATCC 33693] Length = 150 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268 ++ +K+ + ++ G E +G+ + + + M + ++LN+SN+ Sbjct: 75 FYATTKTKQKYSDVKYEENDFIMFGPESRGIPEEILNKNPERCITIPMIPMGRSLNLSNS 134 Query: 269 AAVALYITQNHF 280 A + LY Sbjct: 135 AVIILYEAYRQL 146 >gi|254527140|ref|ZP_05139192.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9202] gi|221538564|gb|EEE41017.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9202] Length = 237 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 17/232 (7%) Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + +++L T+ L + + H + V + + + G+A Sbjct: 2 LKSGKNP-YKILVTEKWLRKNQNLSRKFHQSIINIVTEEVLASAISTI-NPDGIAALVEI 59 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP---------- 170 P ++VLD + DP N+G + R+A+A D I P Sbjct: 60 STIPNYKFDIKDDFVLVLDRIQDPGNMGNLFRTALAAGVDAIFLAGGAHPLGQKVLRASS 119 Query: 171 ---SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 L + ++ + + S KP + + Sbjct: 120 GAVFHLPFLRFDGTEEEILNSLLKSLSELSNVGFKIFSTSSNNKSSKKPSKPYWEVDWSR 179 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS-NAAAVALYITQN 278 + ALILG EG+G+ K QE + ++++LNV+ A + L + Sbjct: 180 RTALILGNEGQGIHKKIQEAFNETITIPHSELVESLNVACVAVPLLL-ERKR 230 >gi|145590122|ref|YP_001156719.1| RNA methyltransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048528|gb|ABP35155.1| RNA methyltransferase, TrmH family, group 2 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 156 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 46/155 (29%), Gaps = 14/155 (9%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R + P E A L ++ E Sbjct: 1 MFNIVLFEPEIPPNTGNIIRLCANTGAKLHLIEPLGFPMEDAKLRRAGLDYHEFASIKVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 N L+ L++ + + G+E KG+ + + Sbjct: 61 PNWGHFLETEKPDPQHLFTLTTKGSGKFHEGKYTPNDYFVFGSETKGITEEVRN------ 114 Query: 253 HLH--------MPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN A+ +Y Sbjct: 115 SIPKMNQMRLAMQDNSRSLNLSNTVAIVVYEAWRQ 149 >gi|291240059|ref|XP_002739939.1| PREDICTED: TAR (HIV-1) RNA binding protein 1-like [Saccoglossus kowalevskii] Length = 1247 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L Q DK L+LG E +G+ + + + G+I++LNV + A+ ++ Sbjct: 1178 NSHCLTQYQFTDKTLLLLGNEREGIPVELIQLLDMCVEIPQLGVIRSLNVHVSGALLVWE 1237 Query: 276 TQNH 279 Sbjct: 1238 YTRQ 1241 >gi|284801266|ref|YP_003413131.1| hypothetical protein LM5578_1016 [Listeria monocytogenes 08-5578] gi|284994408|ref|YP_003416176.1| hypothetical protein LM5923_0970 [Listeria monocytogenes 08-5923] gi|284056828|gb|ADB67769.1| hypothetical protein LM5578_1016 [Listeria monocytogenes 08-5578] gi|284059875|gb|ADB70814.1| hypothetical protein LM5923_0970 [Listeria monocytogenes 08-5923] Length = 169 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + ++ +L ++ +++ Sbjct: 1 MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQ-ETAT 249 +L + +K F I +K + G E GL E Sbjct: 61 YDSLDEFFEKNEGGEFYYITKFGRHVYSDINYSDTNKDYFFVFGKETTGLPDALLQENEE 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M I++LN+SN AA+ Y Sbjct: 121 NCLRIPMTDHIRSLNLSNTAAILAYEALRQQN 152 >gi|254303831|ref|ZP_04971189.1| tRNA methylase SpoU [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324023|gb|EDK89273.1| tRNA methylase SpoU [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 150 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 35/100 (35%), Gaps = 1/100 (1%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G + + G + ++ +K+ + ++ G E +G+ Sbjct: 47 GMDYWHLVDLKVWESFEEFLEANKGIRIFYATTKTKQKYSDVKYKEDDYIMFGPESRGIP 106 Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + M + ++LN+SN+A + LY Sbjct: 107 EDILNKNSERCITIPMIPMGRSLNLSNSAVIILYEAYRQL 146 >gi|115450091|ref|NP_001048646.1| Os03g0100500 [Oryza sativa Japonica Group] gi|113547117|dbj|BAF10560.1| Os03g0100500 [Oryza sativa Japonica Group] Length = 220 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K L+LG E +G+ + + GI+++LNV + A+A++ Sbjct: 158 HFSFPSKTVLVLGREKEGIPVDIIHVLDACVEIPQLGIVRSLNVHVSGAIAVWEYTRQ 215 >gi|217964965|ref|YP_002350643.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes HCC23] gi|290893505|ref|ZP_06556489.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|217334235|gb|ACK40029.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes HCC23] gi|290557006|gb|EFD90536.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|307570475|emb|CAR83654.1| RNA methyltransferase, TrmH family [Listeria monocytogenes L99] Length = 169 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + ++ +L ++ +++ Sbjct: 1 MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQ-ETAT 249 +L + +K F I +K + G E GL E Sbjct: 61 YDSLDEFFKKNEGGEFYYITKFGRHVYSDIDYSDPNKDYFFVFGKETTGLPDALLQENEE 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M I++LN+SN AA+ Y Sbjct: 121 NCLRIPMTDHIRSLNLSNTAAILAYEALRQQN 152 >gi|163786475|ref|ZP_02180923.1| tRNA/rRNA methyltransferase [Flavobacteriales bacterium ALC-1] gi|159878335|gb|EDP72391.1| tRNA/rRNA methyltransferase [Flavobacteriales bacterium ALC-1] Length = 176 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 70/159 (44%), Gaps = 3/159 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + S ++++LD++ +NIG++ R++ AF + I + + K+A G+ Sbjct: 16 EFKDAKKSPIIIILDNIRSLNNIGSVFRTSDAFLIEKIYLCGITAKPPHNDIRKTALGST 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLR 241 E + + + N D ++K+ G + + + + A + G E KG+ Sbjct: 76 ETVDWEYVENTLDLVEKLKVEGVKVCSIEQAESATMLNKFLPQPNTKYAFVFGNEVKGVS 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + ++ + G +LN+S +A V ++ + Sbjct: 136 QEVVDISDTVIEIPQYGTKHSLNISVSAGVVIWDVFSKL 174 >gi|126642729|ref|YP_001085713.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 129 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 2/99 (2%) Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 I + L++ N +AL++G E +GL Sbjct: 24 HEWARMQIWDNIELCLADLKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPE 83 Query: 243 KTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L M ++LN+SNA AV +Y Sbjct: 84 HVRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQ 122 >gi|220913205|ref|YP_002488514.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] gi|219860083|gb|ACL40425.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] Length = 155 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 2/97 (2%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 H + + T H + +SD L+ G E GL Sbjct: 51 YHDLAVVTVHPTLEDAWRHLQPERVYAFTSDGTASYTDIAYQPGDVLMFGRESDGLPAGV 110 Query: 245 QE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + T+ L M +++LN++NAA++A+Y Sbjct: 111 KSDPHVTATVRLPMLPALRSLNLANAASIAVYEAWRQ 147 >gi|163796242|ref|ZP_02190203.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199] gi|159178384|gb|EDP62926.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199] Length = 153 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 20/57 (35%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+LG E G+ A + M ++LNV+ A + L Sbjct: 88 ARFENDDHLVLGRESAGVPDALHTAADLAVRVPMVPGARSLNVAVTAGMVLAEALRQ 144 >gi|56963235|ref|YP_174966.1| rRNA methylase [Bacillus clausii KSM-K16] gi|56909478|dbj|BAD64005.1| rRNA methylase [Bacillus clausii KSM-K16] Length = 157 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 49/150 (32%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ + + +E +L ++ ++ Sbjct: 1 MSLHIVLYQPEIPANTGNIARTCAGTNATLHLIRPLGFSTEDRMLKRAGCDYWPNVTIHY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATS 250 ++ + + F I + + G E GL E T Sbjct: 61 YDSIEELFETYPEGLFYYIETVGSKPYTDFDFRNTEVDHFFVFGKETTGLPNHLTEANTE 120 Query: 251 -MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +I++LN+SN AA+ LY Sbjct: 121 RCLRIPQTDLIRSLNLSNTAAIVLYEALRQ 150 >gi|329942398|ref|ZP_08291208.1| spoU rRNA Methylase family protein [Chlamydophila psittaci Cal10] gi|332287039|ref|YP_004421940.1| rRNA methylase [Chlamydophila psittaci 6BC] gi|313847636|emb|CBY16624.1| putative rRNA methylase [Chlamydophila psittaci RD1] gi|325506473|gb|ADZ18111.1| rRNA methylase [Chlamydophila psittaci 6BC] gi|328815308|gb|EGF85296.1| spoU rRNA Methylase family protein [Chlamydophila psittaci Cal10] gi|328914271|gb|AEB55104.1| spoU [Chlamydophila psittaci 6BC] Length = 156 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 1/71 (1%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-SMAHLHMPGIIKALNVSNA 268 LS+ + + G+E KGL + + +L M I++LN++ Sbjct: 75 FCLSTKGTQYYGDVFLPMDGVYVFGSESKGLPEEVLKKYHNHTYYLPMKPGIRSLNLATT 134 Query: 269 AAVALYITQNH 279 V L+ Sbjct: 135 VGVVLFEAVRQ 145 >gi|218281555|ref|ZP_03487984.1| hypothetical protein EUBIFOR_00549 [Eubacterium biforme DSM 3989] gi|218217344|gb|EEC90882.1| hypothetical protein EUBIFOR_00549 [Eubacterium biforme DSM 3989] Length = 173 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 2/150 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R+ +A + + L +S ++ Sbjct: 1 MLHVVLYEPEIPQNTGNIIRTCMATGSRLHLIEPLGFSLDEKHLRRSGMDYIKDADIHIH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQE-TATS 250 N + + + + K + L+LG E G+ K + + Sbjct: 61 KNWDAFVAENPCEHYYFMTRYGKKAPSEFDFAKEEGDVYLVLGKESTGVDKKILKGHLDT 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN AA+ +Y Sbjct: 121 CMRLPMVANARSLNLSNCAAIIVYEVLRQL 150 >gi|194246610|ref|YP_002004249.1| rRNA methylase [Candidatus Phytoplasma mali] gi|193806967|emb|CAP18399.1| rRNA methylase [Candidatus Phytoplasma mali] Length = 238 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 88/235 (37%), Gaps = 27/235 (11%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + ++G H + A + I ++ +T + NL + + Sbjct: 26 QQFLVFGDHLIEEAEKT--KSILEIYSTSLNKKGILISNNLMKDLKQTKTLFKQVAICRH 83 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 + ++VLD + DP N+G +LRSA+AF + ++ ++ Sbjct: 84 QNNPIVSNK-------------------VLVLDDIQDPSNLGVLLRSALAFGFNQVLLSE 124 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + + +++ GA+ ++ + R + + L +KK L + N Sbjct: 125 NSASFYNEKTIRASQGAIFYLYFQRGNLEYLLQNFKNKNYKIFSSLVRKNKKTLSIDQLN 184 Query: 227 D-----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K L+LG EG G+ + ++ +++LNVS A ++ ++ Sbjct: 185 KFPEDVKKILVLGNEGAGISHNIELITDYFLNIPT-KKVESLNVSVAGSILMHYL 238 >gi|313204822|ref|YP_004043479.1| tRNA/rRNA methyltransferase (spou) [Paludibacter propionicigenes WB4] gi|312444138|gb|ADQ80494.1| tRNA/rRNA methyltransferase (SpoU) [Paludibacter propionicigenes WB4] Length = 177 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 66/157 (42%), Gaps = 3/157 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + L++VLD+V HN+G++ R+A AF + + S A + K+A GA Sbjct: 16 EFKEKAKTPLIVVLDNVRSLHNVGSVFRTADAFLVEAVYLCGITSTPPQAEIHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + + AL+++ + + + + L E K A++LG E KG++ Sbjct: 76 NTVTWKYFEDTHQALEELKAQAYTVFAIEQAAGSTLLPELALNPAMKYAVVLGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + G +LNVS + ++ Sbjct: 136 QSVVDACDGCIEIPQFGTKHSLNVSVTGGIIIWEFFR 172 >gi|15605269|ref|NP_220055.1| rRNA methylase [Chlamydia trachomatis D/UW-3/CX] gi|76789277|ref|YP_328363.1| rRNA methylase [Chlamydia trachomatis A/HAR-13] gi|237802969|ref|YP_002888163.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis B/Jali20/OT] gi|237804891|ref|YP_002889045.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis B/TZ1A828/OT] gi|255311358|ref|ZP_05353928.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis 6276] gi|255317659|ref|ZP_05358905.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis 6276s] gi|255348917|ref|ZP_05380924.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis 70] gi|255503457|ref|ZP_05381847.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis 70s] gi|255507136|ref|ZP_05382775.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis D(s)2923] gi|3328978|gb|AAC68142.1| rRNA Methylase (SpoU family) [Chlamydia trachomatis D/UW-3/CX] gi|76167807|gb|AAX50815.1| rRNA methylase, SpoU family [Chlamydia trachomatis A/HAR-13] gi|231273191|emb|CAX10104.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis B/TZ1A828/OT] gi|231274203|emb|CAX10997.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis B/Jali20/OT] gi|289525585|emb|CBJ15063.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis Sweden2] gi|296435145|gb|ADH17323.1| putative rRNA methylase (SpoU family) protein [Chlamydia trachomatis E/150] gi|296438865|gb|ADH21018.1| putative rRNA methylase (SpoU family) protein [Chlamydia trachomatis E/11023] gi|297748670|gb|ADI51216.1| rRNA methylase, SpoU family [Chlamydia trachomatis D-EC] gi|297749550|gb|ADI52228.1| RRNA methylase, SpoU family [Chlamydia trachomatis D-LC] Length = 151 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 231 LILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 I GAE KGL + ++ ++ M ++LN++ + + +Y Sbjct: 96 YIFGAESKGLPQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 145 >gi|15618570|ref|NP_224856.1| rRNA methylase [Chlamydophila pneumoniae CWL029] gi|15836192|ref|NP_300716.1| rRNA methylase [Chlamydophila pneumoniae J138] gi|16752380|ref|NP_444639.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39] gi|33242017|ref|NP_876958.1| putative rRNA methylase [Chlamydophila pneumoniae TW-183] gi|4376959|gb|AAD18799.1| rRNA Methylase [Chlamydophila pneumoniae CWL029] gi|8163363|gb|AAF73627.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39] gi|8979032|dbj|BAA98867.1| rRNA methylase [Chlamydophila pneumoniae J138] gi|33236527|gb|AAP98615.1| putative rRNA methylase [Chlamydophila pneumoniae TW-183] gi|269302444|gb|ACZ32544.1| RNA methyltransferase, TrmH family [Chlamydophila pneumoniae LPCoLN] Length = 156 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 231 LILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G+E KGL + + + + M I++LN++ + + LY Sbjct: 96 YVFGSESKGLPKEILKKYYKNCLRIPMQQDIRSLNLATSVGIVLYEVVRQ 145 >gi|288958794|ref|YP_003449135.1| RNA methyltransferase [Azospirillum sp. B510] gi|288911102|dbj|BAI72591.1| RNA methyltransferase [Azospirillum sp. B510] Length = 254 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 89/259 (34%), Gaps = 17/259 (6%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + +K +S + SR + L G+ TV AL + + ++L A Sbjct: 10 SPQNPQFKLWESALE-SRGLKKNGKFLLAGLKTVPEALRHHPERFERILFADPAQV---A 65 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 LP + P + L + + L L+ + D Sbjct: 66 GWRLPPGVEPVQLAPALFRALDLSGTGFPLLVGAVPKMPAIDLSRPPQGLELLCA--LGD 123 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+GA+LRSA +F I+ + + ++AS A + +R Sbjct: 124 PSNLGALLRSAASFGVSRIVLLEGAAHPFHPKCLRAASNAQFALTLLRGPRWAAVNDAAG 183 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + ++ +++ LILG EG+G+ + G +++L Sbjct: 184 PLYALDGGGADLTRFDWPADMR-----LILGEEGQGVPADCPAA---RLSVPTTGAVESL 235 Query: 264 NVSNAAAVAL---YITQNH 279 N + A +VAL Y Sbjct: 236 NATVAVSVALFARYAAARR 254 >gi|206602427|gb|EDZ38908.1| Putative TRNA/rRNA methyltransferase (SpoU) [Leptospirillum sp. Group II '5-way CG'] Length = 192 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ + +++G E KG+ + + L M G + +LN+S A + LY Sbjct: 132 YRDPFPAPLVIVVGEEEKGVSRPVLQQSDWKVSLPMRGKVSSLNLSVALGIFLYA 186 >gi|114573243|ref|XP_514281.2| PREDICTED: probable methyltransferase TARBP1 [Pan troglodytes] Length = 1621 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q +K L+LG E +G+ + + GII++LNV + A+ ++ Sbjct: 1554 QYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1611 >gi|282880630|ref|ZP_06289336.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS 5C-B1] gi|281305525|gb|EFA97579.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS 5C-B1] Length = 176 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 58/157 (36%), Gaps = 3/157 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT---KRYSPSESAVLAKSAS 181 L++VLD V +N+G++ RS AF + + E A Sbjct: 16 EFKEADKLPLIVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPPHPEIHKTALGGE 75 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 ++ + + + L++ + + + +K ++ + A++ G E KG+ Sbjct: 76 DSVAWRYFASATEAVEELKRNEYFVYSIEQVEGSTKLQHLTLNRHQRYAVVFGNEVKGVN 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 T + + G +LNVS A + ++ Sbjct: 136 QTTVDACNGCLEIPQFGTKHSLNVSVTAGIVVWEFAR 172 >gi|237784952|ref|YP_002905657.1| putative rRNA methylase, SpoU class [Corynebacterium kroppenstedtii DSM 44385] gi|237757864|gb|ACR17114.1| putative rRNA methylase, SpoU class [Corynebacterium kroppenstedtii DSM 44385] Length = 195 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 51/157 (32%), Gaps = 5/157 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 N L +V D P N G +R + E L ++ + + Sbjct: 34 NPNPPLHVVFDQPVIPPNTGNAIRMCAGVGAHLHLCEPLGFNLEEKNLRRAGLDYHDLVD 93 Query: 189 YIRISNLTDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +L + L G + +S + ++ L+ G E GL + Sbjct: 94 VTIHPSLDECLTTLGAGAPDGPKVYAFTSHTSVRVDTVPYQWGDVLLFGCEPTGLSAEAL 153 Query: 246 E--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 TS + M +++N+SNAAAV Y Sbjct: 154 ADPRITSHVRIPMLPGRRSMNLSNAAAVGAYEAWRQL 190 >gi|307721129|ref|YP_003892269.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM 16294] gi|306979222|gb|ADN09257.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM 16294] Length = 156 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 10/88 (11%), Positives = 30/88 (34%), Gaps = 1/88 (1%) Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 + + + ++ + +P + + G+E KG+ + + Sbjct: 61 WENIEEFFEHNDITCNAYFATTKTDRPYFDADFKEGDYIFFGSETKGIPEDILNKYKSQN 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ + + LY Sbjct: 121 ITIPMTKEGRSLNLAISTGIVLYDAIRQ 148 >gi|330836878|ref|YP_004411519.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM 17374] gi|329748781|gb|AEC02137.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM 17374] Length = 172 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +L +VL P N G I R+ A + + L ++ + Sbjct: 1 MRLHIVLVEPEIPQNTGNIARTCAATGAVLHLVKPYGFSLDEKHLKRAGLDYWHLVEIHE 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 ++L D L + ++ L+ G E KGL S Sbjct: 61 YASLQDFLIATEGRSLYYFSTKAPRSYCD--VRFGEESWLVFGKETKGLPEDLLAGHYAS 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G ++LN+SN+ A+A Y ++ Sbjct: 119 CLRIPMCGEARSLNLSNSVAIATYEVLRQYS 149 >gi|319638738|ref|ZP_07993497.1| tRNA/rRNA methyltransferase [Neisseria mucosa C102] gi|317399979|gb|EFV80641.1| tRNA/rRNA methyltransferase [Neisseria mucosa C102] Length = 154 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R D + P +S+ + ++ H Sbjct: 1 MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDY--HEFAKLT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + G + L++ ++ + L+ G E +GL + ++ A Sbjct: 59 VHENFEDCLKALEGRRIFALTTKGSTRPDEVSFREGDVLLFGPETRGLPAEILDSLPAGQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++N+SN AV L+ Sbjct: 119 KIRLPMMPGSRSMNLSNTVAVILFEAWRQ 147 >gi|313901727|ref|ZP_07835156.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus DSM 13965] gi|313468015|gb|EFR63500.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus DSM 13965] Length = 153 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + T G + L Q L+ G+E +GL P Sbjct: 51 YWAHVAWQVHDTWDDLLAALPGARFCYLDPRGSLWYSQMDFAPGDVLVFGSESRGLPPGL 110 Query: 245 QE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E + + M +++LN+++ A+ LY Sbjct: 111 MEERPGPVLRVPMRPGLRSLNLASTVALVLYEAYRQ 146 >gi|313243076|emb|CBY39772.1| unnamed protein product [Oikopleura dioica] Length = 228 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 77/219 (35%), Gaps = 7/219 (3%) Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 N + F+ L+ + + R + + +D + E + T + Sbjct: 12 KNATSSCFKFLSFETEIDRFYKLKTSKEDDKIS----RDLDDLSLDEPTNVQ-QKITPWI 66 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKS 179 +D L++ ++ +N+G I R+A F + I + LA + Sbjct: 67 QDSVIDKKSCEGLVICASLIDKANNLGGITRTAEVFGAESLAISNLSILKSKDYTSLAVT 126 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 A ++ I+ L + + +E+ K ++LG E +G Sbjct: 127 AMKWIDIQEVKAINLQKWLLSMKMKGYCLAGLEQTTNSISIEKFDFPKKCVVVLGNEREG 186 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + + GII++LNV +AA++++ Sbjct: 187 IPTNIISLLDVVLEIPQKGIIRSLNVHVSAAISIWEYTR 225 >gi|16802975|ref|NP_464460.1| hypothetical protein lmo0935 [Listeria monocytogenes EGD-e] gi|47096222|ref|ZP_00233820.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes str. 1/2a F6854] gi|224499473|ref|ZP_03667822.1| hypothetical protein LmonF1_07132 [Listeria monocytogenes Finland 1988] gi|224503097|ref|ZP_03671404.1| hypothetical protein LmonFR_11343 [Listeria monocytogenes FSL R2-561] gi|254827880|ref|ZP_05232567.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|254832098|ref|ZP_05236753.1| hypothetical protein Lmon1_12159 [Listeria monocytogenes 10403S] gi|254898892|ref|ZP_05258816.1| hypothetical protein LmonJ_03725 [Listeria monocytogenes J0161] gi|254911620|ref|ZP_05261632.1| RNA methyltransferase [Listeria monocytogenes J2818] gi|254935946|ref|ZP_05267643.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|255027352|ref|ZP_05299338.1| hypothetical protein LmonocytFSL_15203 [Listeria monocytogenes FSL J2-003] gi|16410337|emb|CAC99013.1| lmo0935 [Listeria monocytogenes EGD-e] gi|47015367|gb|EAL06302.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes str. 1/2a F6854] gi|258600261|gb|EEW13586.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|258608534|gb|EEW21142.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|293589567|gb|EFF97901.1| RNA methyltransferase [Listeria monocytogenes J2818] Length = 169 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + ++ +L ++ +++ Sbjct: 1 MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQ-ETAT 249 +L + +K F I +K + G E GL E Sbjct: 61 YDSLDEFFEKNEGGEFYYITKFGRHVYSDIDYSDTNKDYFFVFGKETTGLPDALLQENEE 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M I++LN+SN AA+ Y Sbjct: 121 NCLRIPMTDHIRSLNLSNTAAILAYEALRQQN 152 >gi|269126522|ref|YP_003299892.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM 43183] gi|268311480|gb|ACY97854.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM 43183] Length = 180 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 51/147 (34%), Gaps = 2/147 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + L++ N+G +LR+ A + R A+ + + Sbjct: 30 HSCWNFLIVAPLWPLHGANLGTLLRTCDAVGA--CLAVPRLPWVPEALRRGNTLRHRACV 87 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + ++ + + ++ + + + +LG E +G+ + + Sbjct: 88 HWTGDPCAWLLKRRAEGFRVLGVEVAEGAVRLADLPPARTPTIAVLGHESRGIPDEALDL 147 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + M G +LNV+ A ++ LY Sbjct: 148 LDAAVEIPMVGTGHSLNVAVAGSLVLY 174 >gi|157413366|ref|YP_001484232.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9215] gi|157387941|gb|ABV50646.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus str. MIT 9215] Length = 160 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 9/68 (13%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---------IIKALNVSNAAAVAL 273 L+ G E GL + + + + MP +++LN+S A +A+ Sbjct: 88 FKFKHDDILLFGREDLGLPDYIIDKSDFLISIFMPNLQTGNNAQKGVRSLNLSVACGIAI 147 Query: 274 YITQNHFA 281 Y Sbjct: 148 YEAHKQIN 155 >gi|296230937|ref|XP_002807779.1| PREDICTED: LOW QUALITY PROTEIN: probable methyltransferase TARBP1-like [Callithrix jacchus] Length = 1626 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q +K L+LG E +G+ + + GII++LNV + A+ ++ Sbjct: 1559 QYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1616 >gi|183597245|ref|ZP_02958738.1| hypothetical protein PROSTU_00489 [Providencia stuartii ATCC 25827] gi|188023560|gb|EDU61600.1| hypothetical protein PROSTU_00489 [Providencia stuartii ATCC 25827] Length = 167 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 45/158 (28%), Gaps = 10/158 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R + + L ++ E Sbjct: 1 MPHIVLFEPEIPPNTGNIIRLCANTGFSLHLIHPLGFTWDDKRLRRAGLDYSEFADIKHH 60 Query: 193 SNLTDA--------LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + + L++ K L+ G E +GL P Sbjct: 61 HDYYAFLDSEGLSPDNNQSASCARVFALTTKGKPSHSNVSYRQDDYLMFGPETRGLPPYV 120 Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M +++N+SN+ AV ++ Sbjct: 121 LDNMPIEQKIRIPMLADSRSMNLSNSVAVVVFEAWRQL 158 >gi|110825988|ref|NP_005637.3| probable methyltransferase TARBP1 [Homo sapiens] gi|74739787|sp|Q13395|TARB1_HUMAN RecName: Full=Probable methyltransferase TARBP1; AltName: Full=TAR RNA-binding protein 1; AltName: Full=TAR RNA-binding protein of 185 kDa; Short=TRP-185 gi|1184692|gb|AAC50379.1| TAR RNA loop binding protein [Homo sapiens] gi|56204383|emb|CAI22828.1| TAR (HIV-1) RNA binding protein 1 [Homo sapiens] gi|56205978|emb|CAI22931.1| TAR (HIV-1) RNA binding protein 1 [Homo sapiens] gi|119590399|gb|EAW69993.1| Tar (HIV-1) RNA binding protein 1 [Homo sapiens] gi|162318782|gb|AAI56250.1| TAR (HIV-1) RNA binding protein 1 [synthetic construct] gi|1586092|prf||2203267A TRP-185 protein Length = 1621 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q +K L+LG E +G+ + + GII++LNV + A+ ++ Sbjct: 1554 QYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1611 >gi|255019981|ref|ZP_05292054.1| tRNA (cytosine34-2'-O-)-methyltransferase [Acidithiobacillus caldus ATCC 51756] gi|254970510|gb|EET27999.1| tRNA (cytosine34-2'-O-)-methyltransferase [Acidithiobacillus caldus ATCC 51756] Length = 168 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 46/149 (30%), Gaps = 3/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G ++R + + A L ++ E +R Sbjct: 14 WLDVVLFEPEIPPNTGNVIRLCANTGVVLHLIEPLGFAWDDARLRRAGLDYWE-FARVRR 72 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 +K + + L+ G E +GL A Sbjct: 73 HEQWQDCRKALGERRVLAFTTKAEPGSFARARFAPGDVLLFGPETRGLPADLLNQFPAEQ 132 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++N+SN+ AVA++ Sbjct: 133 KLRLPMRPGSRSMNLSNSVAVAVFEAWRQ 161 >gi|116872332|ref|YP_849113.1| RNA methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741210|emb|CAK20332.1| RNA methyltransferase, TrmH family, group 2 [Listeria welshimeri serovar 6b str. SLCC5334] Length = 169 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + ++ +L ++ +++ Sbjct: 1 MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQ-ETAT 249 +L + +K F I +K + G E GL + E Sbjct: 61 YDSLDEFFEKNAGGEFYYITKFGRHVYSDIDYSDPNKDYFFVFGKETTGLPDELLQENEE 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M I++LN+SN AAV Y Sbjct: 121 NCLRIPMTDHIRSLNLSNTAAVLAYEALRQ 150 >gi|283777832|ref|YP_003368587.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] gi|283436285|gb|ADB14727.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] Length = 170 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 4/151 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L ++L H P N G I RS VA + L ++ +H+ + + Sbjct: 13 LHVILWHPEIPPNTGNIGRSCVAVGAKLWLVRPLGFDISEKQLRRAGLDYWQHLEWEAVD 72 Query: 194 NLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--AT 249 +L + K+ Q + + L+ G E GL + ++ Sbjct: 73 SLDEIRAKIPEPFEQQRVWLFTKFGQSRYSDVTYEQGDVLLFGCESAGLPEEIVSQFPSS 132 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L M +++LN+S++A A+Y Sbjct: 133 AKLRLPMRPQVRSLNLSSSATAAMYEVIRQI 163 >gi|241760704|ref|ZP_04758796.1| RNA methyltransferase, TrmH family, group 2 [Neisseria flavescens SK114] gi|241318885|gb|EER55411.1| RNA methyltransferase, TrmH family, group 2 [Neisseria flavescens SK114] Length = 154 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R D + P +S+ + ++ H Sbjct: 1 MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDY--HEFAKLT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + G + L++ ++ L+ G E +GL + ++ A Sbjct: 59 VHENFEDCLKALEGRRIFALTTKGSTRPDEVSFRKGDVLLFGPETRGLPAEVLDSLPAGQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++N+SN AV L+ Sbjct: 119 KIRLPMMPDSRSMNLSNTVAVILFEAWRQ 147 >gi|332236257|ref|XP_003267321.1| PREDICTED: probable methyltransferase TARBP1 [Nomascus leucogenys] Length = 1621 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q +K L+LG E +G+ + + GII++LNV + A+ ++ Sbjct: 1554 QYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1611 >gi|325963950|ref|YP_004241856.1| rRNA methylase, , group 2 [Arthrobacter phenanthrenivorans Sphe3] gi|323470037|gb|ADX73722.1| rRNA methylase, putative, group 2 [Arthrobacter phenanthrenivorans Sphe3] Length = 155 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 2/97 (2%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 H + + H + +SD L+ G E GL + Sbjct: 51 YHDLAVVTVHPGIEEAWQHLQPERVYAFTSDGTASYTDISYQPGDVLMFGRESVGLPAEL 110 Query: 245 QE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + T+ L M +++LN++NAA++A+Y Sbjct: 111 KTDPHVTATVRLPMLPALRSLNLANAASIAVYEAWRQ 147 >gi|156101974|ref|XP_001616680.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148805554|gb|EDL46953.1| hypothetical protein, conserved [Plasmodium vivax] Length = 2316 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 1/147 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFS-CDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L++V ++ N+ + R+ F ++ S + +I ++ Sbjct: 2168 LIVVASLIDKVPNLAGLCRTCEFFKVQKLMLHNASIVKDFQFQKISSTANKWMNIGELKK 2227 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 ++ L + + PL++ ++ LILG E +GL Sbjct: 2228 GDILKYLMRKKKKYAIVGLEQTKCSVPLKRFAFPERTILILGDEKEGLPSSVLLLLHHCV 2287 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + GII++LNV +AAV +Y Sbjct: 2288 EIPGKGIIRSLNVHVSAAVTIYEYCRQ 2314 >gi|85711495|ref|ZP_01042553.1| Predicted rRNA/tRNA methylase, SpoU family protein [Idiomarina baltica OS145] gi|85694647|gb|EAQ32587.1| Predicted rRNA/tRNA methylase, SpoU family protein [Idiomarina baltica OS145] Length = 154 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G ++R A + + + ++ H Sbjct: 1 MLHLVLFEPEIPPNTGNVIRLAANTGMQLHLIEPLGFDLDEKKVRRAGLDY--HALTQVK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-- 250 + + + + ++ + + L+ G E +GL +T Sbjct: 59 IHKNWSDFLENVDYNRIFACTTKGSTRYTEVAYEENDVLLFGPETRGLPMDVLQTFPQEN 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN+ A+ Y Sbjct: 119 WLRLPMVPDSRSLNLSNSVAIFTYEAWRQL 148 >gi|282882563|ref|ZP_06291184.1| probable tRNA/rRNA methyltransferase [Peptoniphilus lacrimalis 315-B] gi|300814611|ref|ZP_07094862.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297705|gb|EFA90180.1| probable tRNA/rRNA methyltransferase [Peptoniphilus lacrimalis 315-B] gi|300511230|gb|EFK38479.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 154 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 48/149 (32%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L + P N GAI R+ + + + + ++ + Sbjct: 1 MLNICFYEPEIPFNTGAIARTCGLTNTRLHLIKPLGFEIDDKHVKRAGLDYWHLVDISIY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 + D L++ + F + ND+ ++ G E +GL Sbjct: 61 DSYDDLLKRFPNSRFYLATTKASKLYTD--VKYNDEDVIVFGPETRGLPEDLIFSNYDDA 118 Query: 252 AHLHMPGII-KALNVSNAAAVALYITQNH 279 + M ++LN+SN+A + L+ Sbjct: 119 IKIPMLKNYGRSLNLSNSANIILFEALRQ 147 >gi|170051070|ref|XP_001861598.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167872475|gb|EDS35858.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 1272 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +Q + L+LG E +GL +A + G++++LNV A+ ++ Sbjct: 1206 QQIQFPARAVLVLGHEKEGLPAHIISQLDIVAEIPQFGVVRSLNVHVTGAIFMWEYARQ 1264 >gi|167855878|ref|ZP_02478628.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis 29755] gi|219872061|ref|YP_002476436.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165] gi|167852966|gb|EDS24230.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis 29755] gi|219692265|gb|ACL33488.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165] Length = 159 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFAWDDKKLRRSGLDY--HEFVDIQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + L++ + L+ G E +G+ ++ + Sbjct: 59 KYKDFDDFLERAKPKRLFALTTKGEPNHSDVQYELGDFLMFGPESRGIPKAILDSLPMSQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y F Sbjct: 119 KIRIPMCKDSRSMNLSNSVAVVVYEAWRQF 148 >gi|317401243|gb|EFV81886.1| rRNA methylase [Achromobacter xylosoxidans C54] Length = 156 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 48/149 (32%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G +R + + A + ++ E P Sbjct: 1 MFHVILVCPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDARMRRAGLDYHEWQPVRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 L +AL + L++ +++ + + G E GL + Sbjct: 61 DTLQEALDDTGASASHIYALTTQAQRSVGDVRFEPGDVFVFGRESAGLSAEHHALFAPQQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 121 RLRLPMRTGQRSLNLSNAVAVTVFEAWRQ 149 >gi|330924237|ref|XP_003300564.1| hypothetical protein PTT_11833 [Pyrenophora teres f. teres 0-1] gi|311325249|gb|EFQ91337.1| hypothetical protein PTT_11833 [Pyrenophora teres f. teres 0-1] Length = 1272 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K L+LG+E +G+ + + G+ ++LNV A +ALY Sbjct: 1213 LPKKCCLVLGSEKEGISAEVLAVIDRNVEIKTVGVTRSLNVQTAGGIALYEWWR 1266 >gi|189199908|ref|XP_001936291.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983390|gb|EDU48878.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 388 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K L+LG+E +G+ + + G+ ++LNV A +ALY Sbjct: 329 LPKKCCLVLGSEKEGISAEVLAVIDRNVEIKTVGVTRSLNVQTAGGIALYEWWR 382 >gi|152993289|ref|YP_001359010.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1] gi|151425150|dbj|BAF72653.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1] Length = 164 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 1/97 (1%) Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + + +A K H + ++ + ++ G+E KG+ K Sbjct: 51 YWKHLDLVVWESFEAFLKEHPIDEHSYMSTTKTDNLYFNAPFKKGDYILFGSETKGIDEK 110 Query: 244 TQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M G ++LN+ + V +Y Sbjct: 111 VLLAHPEQCITIPMGGKGRSLNLGVSVGVVIYDALRQ 147 >gi|126649466|ref|ZP_01721707.1| CspR [Bacillus sp. B14905] gi|126593791|gb|EAZ87714.1| CspR [Bacillus sp. B14905] Length = 157 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ + + ++ +L ++ + + Sbjct: 1 MPLHIVLYQPEIPANTGNIARTCAGTNTSLHLIRPLGFSTDDKMLKRAGLDYWHSVNVVY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQ-ETAT 249 +L D + I SD ++ + G E GL + E Sbjct: 61 HDSLDDFIAYSKDGDVYLIETYSDEPFTTHDFSDKERDIYFMFGKETTGLPKEFAYERRN 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +++LN+SN AA+ +Y Sbjct: 121 MCLRIPQSDHVRSLNLSNTAAIVIYEALRQ 150 >gi|90418297|ref|ZP_01226209.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1] gi|90337969|gb|EAS51620.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1] Length = 166 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 22/61 (36%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E G+ TA + + M G +++N++ AA +A Sbjct: 102 YTDFTYEPGDVLMFGRESAGVTDAIHATADASVTIPMEGGGRSINLAVAAGMAAGEVLRQ 161 Query: 280 F 280 Sbjct: 162 L 162 >gi|71277929|ref|YP_271035.1| RNA methyltransferase [Colwellia psychrerythraea 34H] gi|71143669|gb|AAZ24142.1| RNA methyltransferase, TrmH family, group 2 [Colwellia psychrerythraea 34H] Length = 154 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L ++ H Sbjct: 1 MLDVVLFQPQIPPNTGNIIRLCANSGFRLHLIEPLGFDLDDKKLRRAGLDY--HEFAAIQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS- 250 + + + +++ + L+ G+E GL + + Sbjct: 59 RHANFNAFLEKEQPKRVLAITTKTNNFYGDISFAAGDYLLFGSETAGLPEEVRAQIPDEN 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA AV +Y Sbjct: 119 KLRIPMLKESRSMNLSNATAVIVYDAWRQL 148 >gi|302832103|ref|XP_002947616.1| hypothetical protein VOLCADRAFT_116506 [Volvox carteri f. nagariensis] gi|300266964|gb|EFJ51149.1| hypothetical protein VOLCADRAFT_116506 [Volvox carteri f. nagariensis] Length = 279 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 1/149 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R ++L+VL+ D N A LR+A + +A G Sbjct: 34 CSRTDRILLVLERCTDNQNYLACLRTAEILGVQNVWIVLSPRGM-KNEALIAADGWTSGH 92 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 S + G +T ++A+++G E G+ + Sbjct: 93 LPPPPSACRRCWRMAGKSGPRTWRRRDAILLHGTALSLPARLAVVMGREADGVSREMLAA 152 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276 A L M G + N+S A ++ L+ Sbjct: 153 AHRRVCLPMYGFNDSFNLSVATSMVLHHL 181 >gi|189191132|ref|XP_001931905.1| RNA methyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187973511|gb|EDU41010.1| RNA methyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 651 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 44/299 (14%), Positives = 84/299 (28%), Gaps = 67/299 (22%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI--- 104 + F+YG +V AA+ RK ++L + + + + + D+ Sbjct: 339 SEFIYGTRSVLAAIKANRRKFYKLYIHARGMENSQAIKSTIRSLKLFHITTEVGDEYMRA 398 Query: 105 ---VGKEAVHQGLALETAPLLSPTLDAVR------------------------------- 130 H GL LE +P + + Sbjct: 399 MDKASNGRPHNGLILEASPPPVLPITQLTAASIEDGAFNLSLDRQSAEDEAINGTQELYE 458 Query: 131 ------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---------- 174 L++ +D V D N+GAI RSA D I+T ++ S Sbjct: 459 YKSDGWRYPLILYIDGVVDEGNLGAIARSAYVLGVDAIVTPTHHTAEWSPIAIKASSGAA 518 Query: 175 ---------VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + + I S+ + ++ + Sbjct: 519 EAMPLFRVKEPEQFFQSSSQVGWRIYASDAVPLSTQDGQHVVYSLSQRYSPLPADHSPLA 578 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPG-----IIKALNVSNAAAVALYITQNH 279 L++G+E G++ + A + + + NVS AA + Y Sbjct: 579 EHPTILMMGSEHSGVKKHLAKMAHYKVGIPHGRSVDEVGVDSFNVSVAAGILCYQMMQR 637 >gi|75907629|ref|YP_321925.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413] gi|75701354|gb|ABA21030.1| RNA methyltransferase TrmH, group 1 [Anabaena variabilis ATCC 29413] Length = 243 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + ALI G E +GL + A + +LN++ A + Y + Sbjct: 107 SQPSALIFGREDRGLSNEELIYAQRFIRIPTSPDYLSLNLATAVGICCYELAQNLT 162 >gi|260949181|ref|XP_002618887.1| hypothetical protein CLUG_00046 [Clavispora lusitaniae ATCC 42720] gi|238846459|gb|EEQ35923.1| hypothetical protein CLUG_00046 [Clavispora lusitaniae ATCC 42720] Length = 405 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 55/340 (16%), Positives = 98/340 (28%), Gaps = 70/340 (20%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65 KK +K+ K AK + D S K + T P ++YG H V AAL Sbjct: 66 KKLDDKVKRQKSLREAKKKHLMGDDYYQSSKPAKPKMTLNPLCEYVYGTHPVIAALTAKK 125 Query: 66 RKIFQLLATKNALARLDWDANLPH--PFPVKTVP-------------------------- 97 R F L N L + Sbjct: 126 RDAFSKLFIHNTKEHTPKILKLAKNFGVKIIEKDTKGEMNVLSSNGVHNGVVLETKPLSF 185 Query: 98 ------PQTIDKIVGKEAVHQGL------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 D G+ +V + T + ++LD + DP Sbjct: 186 PLISTLENDFDGETGEYSVTLMNELTGDEKSFQHTVARHTPHNYKRFPFGLLLDGITDPQ 245 Query: 146 NIGAILRSAVAFSCDGIITTKR----------------------YSPSESAVLAKSASGA 183 N+G+I+R+A D I+ + Y ++ + + Sbjct: 246 NVGSIIRTAYYLGVDFIVIPESESARLGPATAKASAGALDLLTIYKTDDTLTFLDNVRKS 305 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 ++ D L M S + + L + + ++ G+EG G+R Sbjct: 306 GWNVVTTSSRMSEDELNSMKSKHRPALENKYIEPQELPALMNQTPMLMVFGSEGAGVRTN 365 Query: 244 TQETATSMAHLH-----MPGIIKALNVSNAAAVA---LYI 275 + + + L ++ +LNV AA++ + Sbjct: 366 IKFRSDYLVGLPKGRLETDEVVDSLNVGVAASLLVSKCFE 405 >gi|260914705|ref|ZP_05921170.1| RNA methyltransferase [Pasteurella dagmatis ATCC 43325] gi|260631209|gb|EEX49395.1| RNA methyltransferase [Pasteurella dagmatis ATCC 43325] Length = 158 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDY--HEFAEIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 + T + L++ Q L+ G E +G+ A Sbjct: 59 RHKTFEAFLQSERPKRLFALTTKGTPAHSQVQFELGDYLMFGPESRGIPMSILNSLAAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y Sbjct: 119 KIRIPMTENSRSMNLSNSVAVTVYEAWRQL 148 >gi|240118802|ref|ZP_04732864.1| SpoU [Neisseria gonorrhoeae PID1] gi|268604513|ref|ZP_06138680.1| RNA methyltransferase [Neisseria gonorrhoeae PID1] gi|268588644|gb|EEZ53320.1| RNA methyltransferase [Neisseria gonorrhoeae PID1] Length = 154 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R D + P +SA + ++ H Sbjct: 1 MLTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDY--HEFASLT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + L++ ++ L+ G E +GL ++ A Sbjct: 59 VHENFDDCLKSLADRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSLPAAQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++N+SN +V L+ Sbjct: 119 KIRLPMRPGSRSMNLSNTVSVILFEAWRQ 147 >gi|237741776|ref|ZP_04572257.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13] gi|256845104|ref|ZP_05550562.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2] gi|294785608|ref|ZP_06750896.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp. 3_1_27] gi|229429424|gb|EEO39636.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13] gi|256718663|gb|EEU32218.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2] gi|294487322|gb|EFG34684.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp. 3_1_27] Length = 150 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 1/100 (1%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G + + G + ++ +K+ + ++ G E +G+ Sbjct: 47 GMDYWHLVDLKIWESFEEFLETNKGIRLFYATTKTKQKYCDVKYEENDYIMFGPESRGIP 106 Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M + ++LN+SN+A + LY Sbjct: 107 EDILNKNPERCITIPMIPMGRSLNLSNSAVIILYEAYRQL 146 >gi|237806923|ref|YP_002891363.1| RNA methyltransferase, TrmH family, group 2 [Tolumonas auensis DSM 9187] gi|237499184|gb|ACQ91777.1| RNA methyltransferase, TrmH family, group 2 [Tolumonas auensis DSM 9187] Length = 154 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L + L P N G I+R + + L ++ H Sbjct: 1 MLHIALYEPEIPPNTGNIIRLCANTGYFLHLIEPMGFAWDDKRLRRAGLDY--HEFAEIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + ++ K + L+ G E +GL E+ Sbjct: 59 RHANFENFLSTIGNARIFACTTKGKAYPSEAGFIAGDVLLFGPETRGLPMSIIESLPEAQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNA +V +Y + Sbjct: 119 RLRIPMLPQSRSMNLSNAVSVFVYESWRQL 148 >gi|74317179|ref|YP_314919.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259] gi|74056674|gb|AAZ97114.1| RNA methyltransferase TrmH, group 1 [Thiobacillus denitrificans ATCC 25259] Length = 256 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 20/51 (39%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +AL+ G E GL + + + +LN++ A V Y + Sbjct: 115 PVALVFGNETSGLSNEELSLCQGLVTIPANPDYSSLNLAAAVQVLSYEIRQ 165 >gi|331698389|ref|YP_004334628.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans CB1190] gi|326953078|gb|AEA26775.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans CB1190] Length = 167 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L+ G E GL + Q T L M ++LN++NA +VA+Y Sbjct: 85 HHTDVDYERGDVLLFGRESTGLPAEVQAAPQVTDRVRLPMIPGSRSLNLANAVSVAVYEA 144 Query: 277 QNHF 280 Sbjct: 145 WRRL 148 >gi|323343216|ref|ZP_08083447.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463280|gb|EFY08475.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 247 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 83/245 (33%), Gaps = 7/245 (2%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQT 100 T Q E + + G +V A L R I + + + +K + + Sbjct: 4 RTHQGEIMIVSGKISVKAILKERKRDIEFVAILDKHNDKESRYVERIAEGLKIKRMSREE 63 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSC 159 +D + H G + +S L+ + L LM ++ V DP N+G I R+ + Sbjct: 64 MDALAT-NKTHGGYLVSCGKRISDPLNYLPKQTLSLMCIEGVTDPFNLGEICRTVASLGF 122 Query: 160 D-GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 D I + + E+ ++ SA + +D D + Sbjct: 123 DGIITPSYDFYEHEAKLIRASAGASESLWWMQSDDLSSDLKAIKAKKVVMAAAHRGDESE 182 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN-AAAVALYITQ 277 L D++ + LG +GL + + + + +L+ S A +V Y Sbjct: 183 SLLTYKLPDRVCICLGGALRGLSKSVLDISDVNVRIDYDARV-SLS-SVGACSVFAYERY 240 Query: 278 NHFAK 282 + Sbjct: 241 RQLEE 245 >gi|190572279|ref|YP_001970124.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] gi|190010201|emb|CAQ43809.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] Length = 159 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 4/154 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 Q ++L P N G ++R + E L ++ E+ Sbjct: 1 MNAAPQFHVILFQPEIPPNTGNVIRLCANTGAQLHLVEPLGFALEDKQLKRAGLDYHEYS 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 +L AL ++ + + + D A + G E +GL + Sbjct: 61 RLQVHPDLDTALARIAPKRLFALSTRA--SVRYDSVAFEDGDAFLFGPESRGLPQDVLDA 118 Query: 248 A-T-SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV +Y Sbjct: 119 LPDGRRLRLPMRPDNRSLNLSNTVAVVMYEAWRQ 152 >gi|218531683|ref|YP_002422499.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium chloromethanicum CM4] gi|218523986|gb|ACK84571.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium chloromethanicum CM4] Length = 269 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 75/242 (30%), Gaps = 7/242 (2%) Query: 45 QPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 + + G T+ + + +L D PV + Sbjct: 29 RQGRFIVEGEVTLRLLFSGSARFAAESVLLAPERWPGFA-DLLRGDGPPVYLAGKDVMSA 87 Query: 104 IVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + G V P + L++ L + + N+G + R+A AF D Sbjct: 88 VAGFPIHRGVLAVGLRGAEPSPESLVPPAPAPALVVGLVGLTNHDNVGGLFRNAAAFGAD 147 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 + + ++GA +P R + L + L+ + L Sbjct: 148 AVWLDAETCDPLYRKAIRVSAGAALTVPSARAPSGAALLDLAERHALTPLALTPSGSETL 207 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NH 279 + + L+LG EG GL A + M +LNV+ A A+AL+ Sbjct: 208 DALEPPARTLLLLGTEGPGLPESLMVRA-RRVRIAMAPGFDSLNVATAGAIALHHLAGRR 266 Query: 280 FA 281 A Sbjct: 267 LA 268 >gi|154507934|ref|ZP_02043576.1| hypothetical protein ACTODO_00420 [Actinomyces odontolyticus ATCC 17982] gi|153797568|gb|EDN79988.1| hypothetical protein ACTODO_00420 [Actinomyces odontolyticus ATCC 17982] Length = 243 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQN 278 ++ L+ G+E GL + S+ + G +++NV +AAA+ ++ Sbjct: 182 LPERACLVFGSEASGLSEEMIRACDSVVAITQRGSTRSMNVGHAAAIVMWAHASR 236 >gi|86130258|ref|ZP_01048858.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|85818933|gb|EAQ40092.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 218 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 1/144 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + + ++ V HN A++RS +F + + + + Sbjct: 28 RTTHFTVAVEDVYQLHNTSAVIRSCESFGVQELHVIEEVNAKRIDREIAMGAQ-KWVDVA 86 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 S + LE+ +K A+ G E +GL E A Sbjct: 87 RHNSASSCIKSLREQGYKIVATSPHKDAHRLEEFDVTEKAAIFFGRETEGLSELVMEEAD 146 Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273 ++ M G ++LN+S +AA+ L Sbjct: 147 DFIYIPMVGFTESLNISVSAAITL 170 >gi|332289318|ref|YP_004420170.1| putative tRNA/rRNA methyltransferase YibK [Gallibacterium anatis UMN179] gi|330432214|gb|AEC17273.1| putative tRNA/rRNA methyltransferase YibK [Gallibacterium anatis UMN179] Length = 161 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S E+ Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANCGFRLHLIHPLGFQWDDKRLRRSGLDYHEYTTIKHH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + L+ + L+ G E +G+ T Sbjct: 61 QSYAEFLESEQPKRLFALTTKGGPAHSQ--VKFQLGDYLMFGPETRGIPMAILNTMPIEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y Sbjct: 119 KIRIPMCANSRSMNLSNSVAVTVYEAWRQL 148 >gi|298370452|ref|ZP_06981768.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sp. oral taxon 014 str. F0314] gi|298281912|gb|EFI23401.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sp. oral taxon 014 str. F0314] Length = 154 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R D + P +S+ + ++ H Sbjct: 1 MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDY--HEFAKLT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + G + L++ K ++ + G E +GL + ++ A Sbjct: 59 VHENFEDCLKALEGRRIFALTTKGKTRPDEASFKKGDVFLFGPETRGLPAEILDSLPAER 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++N+SN AAV L+ Sbjct: 119 KLRLPMRPGSRSMNLSNTAAVMLFEAWRQ 147 >gi|289705119|ref|ZP_06501523.1| putative RNA methyltransferase, TrmH family, group 2 [Micrococcus luteus SK58] gi|289558147|gb|EFD51434.1| putative RNA methyltransferase, TrmH family, group 2 [Micrococcus luteus SK58] Length = 186 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ L+ G E GL + T L M ++LN++NA ++A+Y Sbjct: 111 HDRVAYRSGDVLLFGRESTGLPEEVLADPRVTETVCLPMQPARRSLNLANAVSIAVYEAW 170 Query: 278 NH 279 Sbjct: 171 RQ 172 >gi|332529994|ref|ZP_08405944.1| RNA methyltransferase, TrmH family, group 2 [Hylemonella gracilis ATCC 19624] gi|332040467|gb|EGI76843.1| RNA methyltransferase, TrmH family, group 2 [Hylemonella gracilis ATCC 19624] Length = 154 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 53/149 (35%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G ++R A C + E +L ++ E+ R Sbjct: 1 MFRIVLVHPEIPPNTGNVIRLAANTGCALHLIEPLGFAMEDRLLKRAGLDYHEYAEVRRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 ++ L + + L++ + L+ GAE GL P + Sbjct: 61 ADWEAFLSEERPNPERMFALTTRGTGVVHDSAFLPGDWLVFGAETSGLPPGVRAQFAPER 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 121 QLKLPMRAGQRSLNLSNAVAVTVFEAWRQ 149 >gi|313888215|ref|ZP_07821889.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845905|gb|EFR33292.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus harei ACS-146-V-Sch2b] Length = 154 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +V P N GAI R+ + + + L ++ + Sbjct: 1 MLNIVFYEPEIPFNTGAIARTCGLTKTRLHLIRPLGFSVDDSHLKRAGLDYWHLVDINYY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 + + ++K F + K D ++ G E +GL + Sbjct: 61 DSYDELVEKYPDSNFYLASTKAKKKYTD--VEYKDGDFIVFGPETRGLPEDLIFANYDNA 118 Query: 252 AHLHMPGII-KALNVSNAAAVALYITQNHF 280 + M ++LN+SN+A + L+ Sbjct: 119 IRIPMLKDFGRSLNLSNSANIILFEALRQL 148 >gi|329770522|ref|ZP_08261900.1| hypothetical protein HMPREF0433_01664 [Gemella sanguinis M325] gi|328836271|gb|EGF85940.1| hypothetical protein HMPREF0433_01664 [Gemella sanguinis M325] Length = 157 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 1/93 (1%) Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TA 248 + + T + +++I I G E KGL + +E Sbjct: 60 WDSFEEFLENTEDKHYYLITKFGEKNYSNFDFSNKNDEEIYFIFGRETKGLPKEFREKYN 119 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M +++LN+SN AA+ +Y Sbjct: 120 NQCLRIPMSDKVRSLNLSNTAALIIYEALRQQN 152 >gi|291042902|ref|ZP_06568643.1| spoU protein [Neisseria gonorrhoeae DGI2] gi|293398088|ref|ZP_06642293.1| RNA methyltransferase, TrmH family, group 2 [Neisseria gonorrhoeae F62] gi|291013336|gb|EFE05302.1| spoU protein [Neisseria gonorrhoeae DGI2] gi|291611351|gb|EFF40421.1| RNA methyltransferase, TrmH family, group 2 [Neisseria gonorrhoeae F62] Length = 157 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 4/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I+R D + P +SA + ++ H Sbjct: 3 FMLTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDY--HEFASL 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--AT 249 + G + L++ ++ L+ G E +GL ++ A Sbjct: 61 TVHENFDDCLKSLAGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSLPAA 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++N+SN +V L+ Sbjct: 121 QKIRLPMRPGSRSMNLSNTVSVILFEAWRQ 150 >gi|284799524|ref|ZP_05984222.2| RNA methyltransferase, TrmH family, group 2 [Neisseria subflava NJ9703] gi|284798134|gb|EFC53481.1| RNA methyltransferase, TrmH family, group 2 [Neisseria subflava NJ9703] Length = 157 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 4/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I+R D + P +S+ + ++ H Sbjct: 3 YMFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDY--HEFAKL 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--AT 249 + G + L++ ++ + L+ G E +GL + ++ A Sbjct: 61 AVHENFEDCLKALEGRRIFALTTKGSTRPDEVSFREGDVLLFGPETRGLPAEVLDSLPAG 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++N+SN AV L+ Sbjct: 121 QKIRLPMMPDSRSMNLSNTVAVILFEAWRQ 150 >gi|311745086|ref|ZP_07718871.1| RNA methylase, SpoU family [Algoriphagus sp. PR1] gi|126577599|gb|EAZ81819.1| RNA methylase, SpoU family [Algoriphagus sp. PR1] Length = 179 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 3/154 (1%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + S L++VLD++ +N+G+ R+ AF + I+ + K+A GA E Sbjct: 18 KQIEKSPLVLVLDNIRSLNNVGSAFRTGDAFRVEKIMLCGITGTPPHRDIQKTALGATES 77 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPK 243 + + DAL+++ G+ L + QE + D IAL+ G E G+ + Sbjct: 78 VEWEHYPQTVDALKELKKQGYTLCALEQVDQSIFLQEYQPDPKEKIALVFGNEVFGVEDE 137 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 E + + G +LN+S ++++ Sbjct: 138 VLELCDHVLEIPQLGTKHSLNISVTLGISVWHMM 171 >gi|116073360|ref|ZP_01470622.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9916] gi|116068665|gb|EAU74417.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9916] Length = 284 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P + L+LG EG+GL P+ + T L +++LNV++AA L + Sbjct: 214 PYWELDWRLPTVLVLGNEGRGLHPELLDCCTHGVTLPHSPAVESLNVASAAVPLLLERRR 273 >gi|111114873|ref|YP_709491.1| spoU protein [Borrelia afzelii PKo] gi|110890147|gb|ABH01315.1| spoU protein [Borrelia afzelii PKo] Length = 222 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 N+K+A+ G E GL + E A + M G ++ N+S A A+ +Y Sbjct: 126 NFPINNKMAVFFGTELTGLSSEVLEAADLCIKIPMYGFTQSYNISVAVAIVMY 178 >gi|317474663|ref|ZP_07933937.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA] gi|316909344|gb|EFV31024.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA] Length = 176 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 3/160 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L +VLD++ HNIG++ R++ AF + I + + K+A GA Sbjct: 17 EFKEAEKLPLTVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 76 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + ++N +A+ + + G+ + + E K+ K A+++G E KG++ Sbjct: 77 FTVDWKYVNNTVEAVDNLKNEGYTVYSVEQAEGSIMLNELTLDKSRKYAIVMGNEVKGVQ 136 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + + + G +LNVS A + ++ N Sbjct: 137 QEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFNKLK 176 >gi|117920726|ref|YP_869918.1| RNA methyltransferase [Shewanella sp. ANA-3] gi|117613058|gb|ABK48512.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. ANA-3] Length = 241 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 22/53 (41%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + T + +LN++ A + Y T+ Sbjct: 105 LTGPVAIVFGRENHGLTNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETR 157 >gi|260494708|ref|ZP_05814838.1| tRNA methylase SpoU [Fusobacterium sp. 3_1_33] gi|260197870|gb|EEW95387.1| tRNA methylase SpoU [Fusobacterium sp. 3_1_33] Length = 150 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P+N G I RS V + + + + ++ + + Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTNTKLHLIKPLGFSLDEKQVKRAGMDYWHLVNLKVWESF 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254 + L+ + K ++ G E +G+ + + Sbjct: 63 EEFLEANKGIRLFYATTKTKQKYCD--VKYKKNDYIMFGPESRGIPEDILNKNPERCITI 120 Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280 M + ++LN+SN+A + LY Sbjct: 121 PMIPMGRSLNLSNSAVIILYEAYRQL 146 >gi|253991816|ref|YP_003043172.1| tRNA /rRNA methyltransferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783266|emb|CAQ86431.1| hypothetical tRNA/rRNA methyltransferase [Photorhabdus asymbiotica] Length = 170 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 45/154 (29%), Gaps = 5/154 (3%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I+R + + L ++ E + Sbjct: 8 HMLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQ 67 Query: 192 ISNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + L+ G L + L+ G E +GL + Sbjct: 68 HHDYHSFLENEGVTGESFARLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPSYVLDNM 127 Query: 249 --TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV ++ Sbjct: 128 PPQQKIRIPMLADSRSMNLSNSVAVVVFEAWRQL 161 >gi|227549929|ref|ZP_03979978.1| SpoU family rRNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] gi|227077945|gb|EEI15908.1| SpoU family rRNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] Length = 169 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 50/157 (31%), Gaps = 4/157 (2%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 LD + L ++ D+ P N G +R + + L ++ Sbjct: 9 LDLWPVAHLHVIFDNPVIPPNTGNAIRMCAGSGATLHLVEPLGFTLDEKHLRRAGLDY-- 66 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 H I + G + ++ + + AL+ G E GL Sbjct: 67 HDLANVIIHPDLDACLAALTGSRVFAFTTQASAYFHEIAYERGDALLFGTEPTGLPESHA 126 Query: 246 ET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T + M +++N+SN+AAVA Y Sbjct: 127 HHPRVTERVRIPMLPGRRSMNLSNSAAVATYEAWRQL 163 >gi|317478097|ref|ZP_07937272.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36] gi|316905695|gb|EFV27474.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36] Length = 175 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 3/159 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++VLD++ HNIG++ R++ AF + I + + K+A GA Sbjct: 16 EFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + + N +A+ + S G+ + + E K K A+++G E KG++ Sbjct: 76 FTVDWKYVDNSVEAVDNLKSEGYIVYSVEQAEGSVMLDELVLDKTKKYAVVMGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + + G +LNVS A + ++ Sbjct: 136 QEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFKKL 174 >gi|297570796|ref|YP_003696570.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum DSM 20595] gi|296931143|gb|ADH91951.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum DSM 20595] Length = 226 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 27/50 (54%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ LI G E GL + A S ++ G +++NV+ AAA++++ Sbjct: 157 LPERAVLIFGQESNGLSAELLAAADSAVYIPQYGSTRSMNVAAAAAISMH 206 >gi|262037571|ref|ZP_06011027.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii F0264] gi|261748393|gb|EEY35776.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii F0264] Length = 156 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 35/98 (35%), Gaps = 1/98 (1%) Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + Y+ + + + ++ +K+ ++ G E +G+ Sbjct: 51 WKDVQLYVWEDFEHFFKENIENRNVNLYFATTKTKRRYSDVNYGKNDYVMFGPESRGIPE 110 Query: 243 KTQETATSM-AHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M + ++LN+SN+AA+ LY Sbjct: 111 EILNRYKENNITIPMLPLGRSLNLSNSAAIILYEALRQ 148 >gi|1717813|sp|P52393|TSNR_STRLU RecName: Full=rRNA (adenosine-2'-O-)-methyltransferase; AltName: Full=23S rRNA [AM1067] 2'-O-methyltransferase; Short=23S rRNA methylase; AltName: Full=Thiostrepton-resistance methylase gi|763508|gb|AAA99931.1| rRNA methyltransferase [Streptomyces laurentii] Length = 270 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282 ++++ L+ G+E G + AT + M ++LNVS +A +AL+ + + ++ Sbjct: 210 DERLVLVFGSEKTGPSGEFAGVATESVSIPMNPAAESLNVSVSAGIALHRRARRNLSR 267 >gi|57242225|ref|ZP_00370164.1| RNA methyltransferase, TrmH family, group 2 [Campylobacter upsaliensis RM3195] gi|57016905|gb|EAL53687.1| RNA methyltransferase, TrmH family, group 2 [Campylobacter upsaliensis RM3195] Length = 154 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G+I R I + ++ + + I Sbjct: 1 MFHIVLVHPRIPQNTGSIGRMCFNVGFKLHIIKPCVFDLSEKAVKRAGLDYWDKLEPIIW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-SM 251 +L + L+ + ++ SKKP L G+E GL + Sbjct: 61 ESLEEFLRSNLQCKERFFFATTKSKKPYFSVKFRAGDFLFFGSESFGLPNELMNLNEAHQ 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ + + Y Sbjct: 121 ITIPMKPYGRSLNLATSVGIVSYEALRQ 148 >gi|332184301|gb|AEE26555.1| tRNA (cytosine34-2'-O-)-methyltransferase [Francisella cf. novicida 3523] Length = 155 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 3/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + L P N G I+R + E L ++ H Sbjct: 1 MINIALYEPEIPPNTGNIIRLCANVGAKLHLIEPLGFELEDKQLRRAGLDY--HEFADLK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 A + + ++ +K+ Q + L+ G E +GL E Sbjct: 59 IYKNFAEFYQKNEDKKIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPVDVLELLKQTQ 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SN+ AV LY N+ Sbjct: 119 LKIPMYKNSRSLNLSNSVAVILYGALNNI 147 >gi|254524481|ref|ZP_05136536.1| tRNA/rRNA methyltransferase [Stenotrophomonas sp. SKA14] gi|219722072|gb|EED40597.1| tRNA/rRNA methyltransferase [Stenotrophomonas sp. SKA14] Length = 159 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQETA-T-SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 D A + G E +GL + L M ++LN+SN AV +Y Sbjct: 96 FEDGDAFLFGPESRGLPQDVLDALPDGRRLRLPMRPDNRSLNLSNTVAVVMYEAWRQ 152 >gi|254456524|ref|ZP_05069953.1| rRNA Methylase [Candidatus Pelagibacter sp. HTCC7211] gi|207083526|gb|EDZ60952.1| rRNA Methylase [Candidatus Pelagibacter sp. HTCC7211] Length = 157 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 15/144 (10%), Positives = 42/144 (29%), Gaps = 2/144 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + P N AI+R+ I + + Sbjct: 12 IALYEPDIPQNTAAIIRTCACLGAKLEIIEPCGFHLSDKRFKRVVMDYM--DWDKINIYQ 69 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + + +++ + + ++ G E G+ + + Sbjct: 70 SSDKFFKAKKNQRIVLMTTKASVSYTEFKFEKNDTILFGRESSGVPESVHQLINDRLKIP 129 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 M ++LN++++ A+ L + Sbjct: 130 MSEDTRSLNIASSVAIILAESLRQ 153 >gi|327262182|ref|XP_003215904.1| PREDICTED: probable methyltransferase TARBP1-like [Anolis carolinensis] Length = 1589 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 62/183 (33%), Gaps = 2/183 (1%) Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 KI+ + + LE T NS+L++V ++ P N+G + R+ F Sbjct: 1398 DVQKKIIPWKDSIPDVDLELVFQDRATKLCKSNSKLIVVASLLDKPTNLGGLCRTCEIFG 1457 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHI--PYIRISNLTDALQKMHSWGFQTIGLSSDS 216 +I + + S S QK + Sbjct: 1458 VSALIVGSIHYIHDKQFQYLSVSAEQWLSLLEVKPFQLADYLEQKKIEGYTIIGVEQTAK 1517 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L + +K L+LG E +G+ + + + G+I++LNV + A+ ++ Sbjct: 1518 SCDLTEYSFPEKSLLLLGNEHEGIPANLIQQLDTCVEIPQQGVIRSLNVHVSGALLIWEY 1577 Query: 277 QNH 279 Sbjct: 1578 TRQ 1580 >gi|302807158|ref|XP_002985292.1| hypothetical protein SELMODRAFT_121615 [Selaginella moellendorffii] gi|300147120|gb|EFJ13786.1| hypothetical protein SELMODRAFT_121615 [Selaginella moellendorffii] Length = 248 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 29/89 (32%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + +S + A+I G E +G + Sbjct: 104 WLDVEVWNCAKDCIQALRSRGYRIAVTSTSHDTVSICDMDWTIPTAVIFGNEHEGASDYS 163 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273 A + + M G++ +LNVS AA + + Sbjct: 164 TSQADILCGIPMFGMVDSLNVSVAAGILM 192 >gi|297158833|gb|ADI08545.1| rRNA methyltransferase [Streptomyces bingchenggensis BCW-1] Length = 258 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 86/244 (35%), Gaps = 16/244 (6%) Query: 39 KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT--- 95 + H + + L G H + AL + + + K A L D ++ Sbjct: 11 RRWHEAAAGTVLLDGFHALKHALRFGAEVRIAVTSDKAAALALADDLAGDLTAVIEERLV 70 Query: 96 -VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAIL 151 V +T+ +V + AL LD S ++VLD+ + N+GA++ Sbjct: 71 EVSAKTLRDLVPRVHPTGVAALAVRRDRRGNLDELAGPSRSAPVVVLDNPRNLGNVGAVV 130 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R A F G++TT P + A + Sbjct: 131 RLAAGFGVAGVVTTGDIDPWHPNAVRSGAGLHFATAVER---------LTSDDLPPGPLY 181 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + + D L G+E G+ P+ ++ AT + L M + + N++ + A+ Sbjct: 182 ALDAEGEDIRSVVIPDDALLAFGSERHGISPEVRKRATRLVALPMRPQVSSYNLATSVAM 241 Query: 272 ALYI 275 AL+ Sbjct: 242 ALFH 245 >gi|313619703|gb|EFR91323.1| RNA methyltransferase [Listeria innocua FSL S4-378] Length = 104 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 1/75 (1%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHLHMPGIIKALN 264 + ++ N + G E GL + + + M I++LN Sbjct: 11 FYYITKFGRHVYSDVDYSDPNKNYFFVFGKETTGLPDELLQANEENCLRIPMTDHIRSLN 70 Query: 265 VSNAAAVALYITQNH 279 +SN AAV Y Sbjct: 71 LSNTAAVLAYEALRQ 85 >gi|156396442|ref|XP_001637402.1| predicted protein [Nematostella vectensis] gi|156224514|gb|EDO45339.1| predicted protein [Nematostella vectensis] Length = 171 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 52/153 (33%), Gaps = 4/153 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++V +N N+G + R+ F ++ ++ S S + Sbjct: 12 LVVVASLINKAPNLGGLCRTCEIFGAKRLVLGSNEVMNDPYFKGLSVSSSKWVDIEQVRP 71 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSM 251 + ++ + K L+LG E +G+ + + + Sbjct: 72 AELNNYLDAMRHDGYSLIGVEQTANSKRLTDFTFPHKTLLLLGNEKEGIPVELIQQLDAC 131 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH--FAK 282 + G+I++LNV + A+ ++ +K Sbjct: 132 VEIPQVGVIRSLNVHVSGALLIWEYTKQCILSK 164 >gi|269123755|ref|YP_003306332.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis DSM 12112] gi|268315081|gb|ACZ01455.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis DSM 12112] Length = 172 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 3/147 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P+N G I RS V + + + ++ +++ + Sbjct: 3 IVLYQPEMPYNTGNIGRSCVITNTTLHLIKPLGFEISDKHIKRTGLDYWKYVDLKIWESF 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254 D ++ S +D K + ++ G E +GL + + Sbjct: 63 EDFMENKGSGKIYFATTKTDRKYSD--VQFEEDDYIMFGPESRGLPEEILNRYKEQNITI 120 Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281 M I ++LN+SN+A + LY Sbjct: 121 PMLKIGRSLNLSNSAVIILYEALRQQN 147 >gi|119899105|ref|YP_934318.1| tRNA/rRNA methylase [Azoarcus sp. BH72] gi|119671518|emb|CAL95431.1| tRNA/rRNA methylase [Azoarcus sp. BH72] Length = 177 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 4/162 (2%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 +A + + ++L P N G I+R A C + LA++ Sbjct: 1 MRAFRAAEARQRAMFHIILFEPEIPPNTGNIIRLAANTGCHLHLVEPLGFVLTDKALARA 60 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 H + + + L++ +++ + A + G E +G Sbjct: 61 GLDY--HDLARVTVHTDWPACRAFLGERRVFALTTRAQRRHDTVDFRPGDAFLFGPESRG 118 Query: 240 LRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L P+ +E+ L M +++N+SNA AV ++ Sbjct: 119 LPPELRESLPPEQRLRLPMVPSNRSMNLSNAVAVMVFEAWRQ 160 >gi|20799558|gb|AAM28546.1|AF494517_1 putative tRNA/rRNA methyl transferase [Tomato big bud phytoplasma] Length = 210 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 4/156 (2%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L S +++LD + DP N G +LRSA AF I + + + + GA+ Sbjct: 45 LKFSGFSDKILILDDIQDPSNAGLLLRSACAFGFKNIFFSNNSVDIYNEKTIQVSQGAIF 104 Query: 186 HIPYIR----ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 ++ + R G + S + K KIALILG EG+G+ Sbjct: 105 NLDFFRGDLANFLSFLKKNDYFVIGTCGHENNFLSNNLINICSKYYKIALILGNEGQGIS 164 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +++ + + + ++++LNV+ A ++ ++ Sbjct: 165 VISRQKSDYLIAIPTTNLVESLNVAVAGSIIMFYMW 200 >gi|15893988|ref|NP_347337.1| tRNA-methylase (SpoU class) [Clostridium acetobutylicum ATCC 824] gi|15023579|gb|AAK78677.1|AE007585_4 Predicted tRNA-methylase (SpoU class) [Clostridium acetobutylicum ATCC 824] gi|325508114|gb|ADZ19750.1| tRNA-methylase (SpoU class) [Clostridium acetobutylicum EA 2018] Length = 160 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 2/74 (2%) Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHLHMPGI-IKALNVS 266 ++ + N +I G E GL + +E+ + M ++LN+S Sbjct: 81 FYFSTTHGNGFYDDVKFNQGDFIIFGRESCGLPDEIRESDPDRCIRVPMVKTSTRSLNLS 140 Query: 267 NAAAVALYITQNHF 280 N A+ Y F Sbjct: 141 NTVAIVAYEAIRQF 154 >gi|15676192|ref|NP_273324.1| RNA methyltransferase [Neisseria meningitidis MC58] gi|261400498|ref|ZP_05986623.1| RNA methyltransferase, TrmH family, group 2 [Neisseria lactamica ATCC 23970] gi|296313717|ref|ZP_06863658.1| RNA methyltransferase, TrmH family, group 2 [Neisseria polysaccharea ATCC 43768] gi|313669261|ref|YP_004049545.1| tRNA/rRNA methyltransferase [Neisseria lactamica ST-640] gi|7225492|gb|AAF40722.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58] gi|254671569|emb|CBA09217.1| hypothetical tRNA/rRNA methyltransferase [Neisseria meningitidis alpha153] gi|269209758|gb|EEZ76213.1| RNA methyltransferase, TrmH family, group 2 [Neisseria lactamica ATCC 23970] gi|296839640|gb|EFH23578.1| RNA methyltransferase, TrmH family, group 2 [Neisseria polysaccharea ATCC 43768] gi|308388487|gb|ADO30807.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis alpha710] gi|309379777|emb|CBX21553.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313006723|emb|CBN88193.1| putative tRNA/rRNA methyltransferase [Neisseria lactamica 020-06] gi|316985198|gb|EFV64150.1| spoU rRNA Methylase family protein [Neisseria meningitidis H44/76] gi|325128977|gb|EGC51828.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis N1568] gi|325130994|gb|EGC53721.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis OX99.30304] gi|325135071|gb|EGC57699.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis M13399] gi|325137093|gb|EGC59689.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis M0579] gi|325141104|gb|EGC63607.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis CU385] gi|325145261|gb|EGC67540.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis M01-240013] gi|325199471|gb|ADY94926.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis H44/76] gi|325202905|gb|ADY98359.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis M01-240149] gi|325205352|gb|ADZ00805.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis M04-240196] gi|325207296|gb|ADZ02748.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis NZ-05/33] Length = 154 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R D + P +SA + ++ H Sbjct: 1 MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDY--HEFASLT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + G + L++ ++ L+ G E +GL ++ A Sbjct: 59 VHENFDDCLKALAGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSLPAAQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++N+SN AV L+ Sbjct: 119 KIRLPMQPGSRSMNLSNTVAVILFEAWRQ 147 >gi|37528643|ref|NP_931988.1| hypothetical protein plu4834 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36788082|emb|CAE17206.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 162 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 5/153 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L ++ E + Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQH 60 Query: 193 SNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA- 248 + L+ G + L + L+ G E +GL P + Sbjct: 61 HDYFAFLENEGLTGASSARLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPPYVLDNMP 120 Query: 249 -TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV ++ Sbjct: 121 PQQKIRIPMLANSRSMNLSNSVAVVVFEAWRQL 153 >gi|116749122|ref|YP_845809.1| tRNA/rRNA methyltransferase SpoU [Syntrophobacter fumaroxidans MPOB] gi|116698186|gb|ABK17374.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobacter fumaroxidans MPOB] Length = 164 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +VL P N G I R+ A + L ++ H+ Sbjct: 10 FQVVLYQPEIPQNTGNIARTCAATHTPLHLVEPLGFRITDRGLKRAGLDYWPHVRLKVHP 69 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMA 252 +L +++ + +D + L G+E GL + Sbjct: 70 DLESLCREIGDRRWVYFSAHADRRYCD--FRFQPGDCLFFGSESFGLPNDLLVSRPGFVI 127 Query: 253 HLHMPG-IIKALNVSNAAAVALYITQNHFA 281 ++ + +++LN++ + +AL+ Sbjct: 128 NIPINRARVRSLNLATSVGIALFEALRQLT 157 >gi|313471790|sp|Q12E50|TRML_POLSJ RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL Length = 164 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R A C + + + ++ E+ +R Sbjct: 1 MFNIVLVEPEIPPNTGNVIRLAANTGCRLHLVEPLGFSMDDKHMRRAGLDYHEYAQVLRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 ++ L + +++ + L+ GAE +GL P +E+ Sbjct: 61 ASWQALLDSQRPPAGRLFAMTTHGAGSVYDMRFLPGDWLVFGAETRGLAPDVRESFPMAQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN AV ++ Sbjct: 121 RLRVPMQPGQRSLNLSNTVAVTVFEAWRQ 149 >gi|297624953|ref|YP_003706387.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM 17093] gi|297166133|gb|ADI15844.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM 17093] Length = 253 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 76/231 (32%), Gaps = 16/231 (6%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGK 107 +G L + +++A L R A P V + ++++ K Sbjct: 30 FGEFPTLELLTHRPEHALRVVAHTKGLGRRGVAAVRARCEARGLP-FEVNDRAVERLSHK 88 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 V + L RN LL+ + +D N+G I+R+ + F + Sbjct: 89 GNV---YLFGVFAKYAAPLARERNHLLLV---NPSDNGNVGTIVRTMLGFGVRDLALIAP 142 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + + +++ GA + + + + K L + Sbjct: 143 AVDLFNPHVVRASMGA---TFAVNFAYFASLEVYRAAHAHRLYPFMLGGAKRLGEVRFEA 199 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+ G EG GL + + ++++LN++ A VALY Sbjct: 200 PYTLVFGPEGAGLPEAYRAF--ESVQIPQSPLVESLNLAVAVGVALYEAAR 248 >gi|223040777|ref|ZP_03611044.1| RNA methyltransferase, TrmH family [Campylobacter rectus RM3267] gi|255322371|ref|ZP_05363517.1| RNA methyltransferase, TrmH family [Campylobacter showae RM3277] gi|222877967|gb|EEF13081.1| RNA methyltransferase, TrmH family [Campylobacter rectus RM3267] gi|255300744|gb|EET80015.1| RNA methyltransferase, TrmH family [Campylobacter showae RM3277] Length = 159 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G+I R V + I + ++ + + Sbjct: 1 MFNIVLVHPQIPQNTGSIGRMCVNANLKLHIIKPTVFDISEKAVRRAGLDYWARLNPVIW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 +L + L + + ++ + K + L G E GL + E + Sbjct: 61 ESLDEFLHANAQFEDRFFYATTKAHKFYFEAEFKKGDFLFFGGESTGLPMELMERNFANA 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ +A + Y Sbjct: 121 IKIPMGEHGRSLNLATSAGIIAYEAIRQ 148 >gi|170726126|ref|YP_001760152.1| RNA methyltransferase [Shewanella woodyi ATCC 51908] gi|169811473|gb|ACA86057.1| RNA methyltransferase, TrmH family, group 1 [Shewanella woodyi ATCC 51908] Length = 254 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 20/53 (37%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + + +LN++ A + Y + Sbjct: 105 LTGPVAIVFGRENNGLTNEELQKCNYHVAIPANPEYTSLNLAQAVQIICYEAR 157 >gi|328865936|gb|EGG14322.1| tRNA/rRNA methyltransferase SpoU family protein [Dictyostelium fasciculatum] Length = 1689 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFA 281 + K L+LG E G+ + GII++LNV + ++ L+ +Q Sbjct: 1614 FVFPTKCLLLLGQEQNGIPSDFLNLVDYCVEIPQFGIIRSLNVHVSGSIVLWEYSQQQIL 1673 Query: 282 K 282 K Sbjct: 1674 K 1674 >gi|322804485|emb|CBZ02035.1| tRNA (cytosine34-2'-O-)-methyltransferase [Clostridium botulinum H04402 065] Length = 155 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 6/151 (3%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ V + + + L ++ +++ Sbjct: 1 MSLNIVLFQPEIPQNTGNIARTCVLTNSRLHLIKPLGFSLDEKHLRRAGLDYWQYLDLSI 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-- 249 + + +K F D ++ G E GL + ++ + Sbjct: 61 YESYEELREKYKDSNFYFSTTHG--NNFYTDVKYRDGDFIVFGRESSGLPDEIRD-SDPS 117 Query: 250 SMAHLHMPGII-KALNVSNAAAVALYITQNH 279 + M ++LN+SN AV Y Sbjct: 118 KCIRIPMINTTTRSLNLSNTVAVVTYEALRQ 148 >gi|326336522|ref|ZP_08202692.1| SpoU family RNA methylase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691395|gb|EGD33364.1| SpoU family RNA methylase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 181 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 3/156 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +++VLD+V +NIG++ R+A AF + I + + K+A GA E + + Sbjct: 24 EKIPVIIVLDNVRSLNNIGSVFRTADAFRIEKIYLCGITACPPHKDIHKTALGATESVTW 83 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQE 246 ++ L+++H +TI + + K ALI G E +G++ + Sbjct: 84 AYEKDILQLLKELHQSQVETIAIEQVEGAQSLSDFLPEKGKKYALIFGNEVEGVQQEVVS 143 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + G +LN+S +A + ++ K Sbjct: 144 LCGKAIEIPQYGTKHSLNISVSAGIVMWEIGQKIRK 179 >gi|227495981|ref|ZP_03926292.1| rRNA methyltransferase [Actinomyces urogenitalis DSM 15434] gi|226834469|gb|EEH66852.1| rRNA methyltransferase [Actinomyces urogenitalis DSM 15434] Length = 287 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 83/259 (32%), Gaps = 23/259 (8%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 DY + + R ++ + A+ L L Sbjct: 14 ADYTSLTDVALRRRLETERGLYMAESSKVIVRAVEAGHAP-RSFLMAPRWYDELRPVIAA 72 Query: 88 PHP---------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNS 132 PV P ++ I G LA P L + + Sbjct: 73 ATGCQGRDDGGGVPVFIAPEPLLESITGFHLHRGALAAMNRPALPSVGELLASARGGAGA 132 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + VL+ + D N+GA RSA A D ++ T + + + G + +P+ RI Sbjct: 133 RRVAVLEDLVDHTNVGAAFRSAAALGIDAVLVTPHCADPLYRRSVRVSMGTVFQVPWTRI 192 Query: 193 SNLTDALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + + + + + ++A++LG EG GL P+T Sbjct: 193 DHWPALDELHAGGFTVAALALSEDSVSLGEFSASPACSGADSRVAVVLGTEGDGLAPRTI 252 Query: 246 ETATSMAHLHMPGIIKALN 264 A ++ + M G + +LN Sbjct: 253 AAADAVVRIPMAGAVDSLN 271 >gi|282600474|ref|ZP_05974442.2| RNA methyltransferase, TrmH family, group 2 [Providencia rustigianii DSM 4541] gi|282565196|gb|EFB70731.1| RNA methyltransferase, TrmH family, group 2 [Providencia rustigianii DSM 4541] Length = 233 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 10/168 (5%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 + + N+ +VL P N G I+R + + L ++ Sbjct: 57 FYSEKYLINAMPHIVLFEPEIPPNTGNIIRLCANTGFSLHLIHPLGFTWDDKRLRRAGLD 116 Query: 183 ALEHIPYIRISNLT--------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 E + + G + L++ K + L+ G Sbjct: 117 YSEFADIKHHHDYYAFLESEGLNPDNNQSESGTRVFALTTKGKPSHSNVSYREDDYLMFG 176 Query: 235 AEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E +GL P + + M +++N+SN+ AV ++ Sbjct: 177 PETRGLPPYVLDNMPMEQKIRIPMLAESRSMNLSNSVAVVVFEAWRQL 224 >gi|195941791|ref|ZP_03087173.1| spoU protein (spoU) [Borrelia burgdorferi 80a] Length = 218 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 N+K+A+ GAE GL + A + M G ++ N+S A A+ +Y K Sbjct: 126 NNKMAIFFGAELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLMRLRK 182 >gi|163840031|ref|YP_001624436.1| RNA methyltransferase [Renibacterium salmoninarum ATCC 33209] gi|162953507|gb|ABY23022.1| RNA methyltransferase [Renibacterium salmoninarum ATCC 33209] Length = 151 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L+ G E GL + + TS L M +++LN++NAA++A+Y Sbjct: 82 YTDIEYQAGDVLMFGPESVGLPAEVKTDPHVTSRVRLPMLPGLRSLNLANAASIAVYEAW 141 Query: 278 NH 279 Sbjct: 142 RQ 143 >gi|59802048|ref|YP_208760.1| hypothetical protein NGO1727 [Neisseria gonorrhoeae FA 1090] gi|194099620|ref|YP_002002751.1| SpoU [Neisseria gonorrhoeae NCCP11945] gi|239999819|ref|ZP_04719743.1| SpoU [Neisseria gonorrhoeae 35/02] gi|240014975|ref|ZP_04721888.1| SpoU [Neisseria gonorrhoeae DGI18] gi|240017423|ref|ZP_04723963.1| SpoU [Neisseria gonorrhoeae FA6140] gi|240081565|ref|ZP_04726108.1| SpoU [Neisseria gonorrhoeae FA19] gi|240113844|ref|ZP_04728334.1| SpoU [Neisseria gonorrhoeae MS11] gi|240116578|ref|ZP_04730640.1| SpoU [Neisseria gonorrhoeae PID18] gi|240122044|ref|ZP_04735006.1| SpoU [Neisseria gonorrhoeae PID24-1] gi|240124341|ref|ZP_04737297.1| SpoU [Neisseria gonorrhoeae PID332] gi|240126553|ref|ZP_04739439.1| SpoU [Neisseria gonorrhoeae SK-92-679] gi|240129015|ref|ZP_04741676.1| SpoU [Neisseria gonorrhoeae SK-93-1035] gi|254494601|ref|ZP_05107772.1| RNA methyltransferase [Neisseria gonorrhoeae 1291] gi|260439661|ref|ZP_05793477.1| SpoU [Neisseria gonorrhoeae DGI2] gi|268595629|ref|ZP_06129796.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268597661|ref|ZP_06131828.1| RNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268599912|ref|ZP_06134079.1| RNA methyltransferase [Neisseria gonorrhoeae MS11] gi|268602247|ref|ZP_06136414.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|268682968|ref|ZP_06149830.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|268685133|ref|ZP_06151995.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|268687395|ref|ZP_06154257.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|59718943|gb|AAW90348.1| putative tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA 1090] gi|193934910|gb|ACF30734.1| SpoU [Neisseria gonorrhoeae NCCP11945] gi|226513641|gb|EEH62986.1| RNA methyltransferase [Neisseria gonorrhoeae 1291] gi|268549018|gb|EEZ44436.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268551449|gb|EEZ46468.1| RNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268584043|gb|EEZ48719.1| RNA methyltransferase [Neisseria gonorrhoeae MS11] gi|268586378|gb|EEZ51054.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|268623252|gb|EEZ55652.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|268625417|gb|EEZ57817.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|268627679|gb|EEZ60079.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|317165109|gb|ADV08650.1| hypothetical protein NGTW08_1693 [Neisseria gonorrhoeae TCDC-NG08107] Length = 154 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R D + P +SA + ++ H Sbjct: 1 MLTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDY--HEFASLT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + G + L++ ++ L+ G E +GL ++ A Sbjct: 59 VHENFDDCLKSLAGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSLPAAQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++N+SN +V L+ Sbjct: 119 KIRLPMRPGSRSMNLSNTVSVILFEAWRQ 147 >gi|320528359|ref|ZP_08029521.1| RNA methyltransferase, TrmH family, group 2 [Solobacterium moorei F0204] gi|320131273|gb|EFW23841.1| RNA methyltransferase, TrmH family, group 2 [Solobacterium moorei F0204] Length = 171 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 2/150 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I+R+ +A +C + L ++ ++ + Y Sbjct: 1 MINVVLYEPEIPQNTGNIMRTCMAMNCRLHLIEPMGFKITDKSLKRAGMDYVKELDYKIY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQ-ETATS 250 + + + + K L+ G E G+ + Sbjct: 61 PDWQTFYNMHEGSYYYITRYGEKTPSEFNYKEDEGKDIYLVFGKESTGIDKHILHDNYDR 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SN A+ +Y + Sbjct: 121 CVRIPMVAQARSLNLSNCVAICVYEVLDQL 150 >gi|294675164|ref|YP_003575780.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23] gi|294471809|gb|ADE81198.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23] Length = 176 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 66/160 (41%), Gaps = 3/160 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++VLD V HN+G++ R+ AF + + S A + K+A GA Sbjct: 16 EFKQADKLPLIVVLDDVRSMHNVGSVFRTGDAFRIEAVYLCGITSTPPMAEIHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLR 241 + + + +A++ + + G++ + + Q K A++LG E KG+ Sbjct: 76 DSVTWKYFDTALEAVETLKAEGYEVYSVEQAHGSTMLQNFTPINNKKYAVVLGNEVKGVH 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + + + G ++NVS + ++ + Sbjct: 136 QEVIDASDGCLEIPQFGTKHSMNVSVTGGIIIWHFAKNII 175 >gi|261878944|ref|ZP_06005371.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361] gi|270334454|gb|EFA45240.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361] Length = 206 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HFAK 282 A+I G E KG++ + + + G +LNVS A + ++ AK Sbjct: 145 PCAVIFGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTAGIVVWEFAKMKLAK 200 >gi|255024638|ref|ZP_05296624.1| hypothetical protein LmonocyFSL_16396 [Listeria monocytogenes FSL J1-208] Length = 160 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + ++ +L ++ +++ Sbjct: 1 MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQ-ETAT 249 +L + +K F I ++K + G E GL E Sbjct: 61 YDSLDEFFEKNEGGEFYYITKFGRHVYSDIDYSDSNKDYFFVFGKETTGLPDSLLQENEE 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M I++LN+SN AA+ Y Sbjct: 121 NCLRIPMTDHIRSLNLSNTAAILAYEALRQQN 152 >gi|227356228|ref|ZP_03840617.1| rRNA methyltransferase [Proteus mirabilis ATCC 29906] gi|227163692|gb|EEI48608.1| rRNA methyltransferase [Proteus mirabilis ATCC 29906] Length = 242 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 27/70 (38%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + +E N +A+I G E GL + + ++ +LN++ Sbjct: 88 WPMLAPRECGERCVKEAANKPVAVIFGRERTGLTNEELQKCDYHLYIPTNPEYGSLNLAM 147 Query: 268 AAAVALYITQ 277 A + Y + Sbjct: 148 AVQLVCYEIR 157 >gi|126644106|ref|XP_001388189.1| tRNA/rRNA methyltransferase-like protein [Cryptosporidium parvum Iowa II] gi|51951322|gb|AAU15130.1| tRNA/rRNA methyltransferase-like protein [Cryptosporidium parvum] gi|126117262|gb|EAZ51362.1| tRNA/rRNA methyltransferase-like protein, putative [Cryptosporidium parvum Iowa II] Length = 214 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-IKALNVSNAAAVALYITQ 277 A +LG EG GL K + + H+ + G +LNV+ A ++ + Sbjct: 99 YPHPFKRSTAFLLGNEGTGLSQKYIKLCDYLIHIPLYGNGTASLNVAIAGSIVFHHFA 156 >gi|67596101|ref|XP_666055.1| OBP33pep like protein [Cryptosporidium hominis TU502] gi|54656965|gb|EAL35825.1| OBP33pep like protein [Cryptosporidium hominis] Length = 213 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-IKALNVSNAAAVALYITQ 277 A +LG EG GL K + + H+ + G +LNV+ A ++ + Sbjct: 99 YPHPFKRSTAFLLGNEGTGLSQKYIKLCDYLIHIPLYGNGTASLNVAIAGSIVFHHFA 156 >gi|293190410|ref|ZP_06608842.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus F0309] gi|292820994|gb|EFF79949.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus F0309] Length = 243 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQN 278 ++ L+ G+E GL + + + G +++NV +AAA+ ++ Sbjct: 182 LPERACLVFGSEASGLSEEMIRACDIVVAITQRGSTRSMNVGHAAAIVMWAHASR 236 >gi|120602052|ref|YP_966452.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4] gi|120562281|gb|ABM28025.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4] Length = 188 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 1/144 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL H P N G + R A + + L ++ H+P Sbjct: 30 MMHIVLYHPEIPPNTGNVARLCAATRTRLHLIEPLGFSLDDRYLKRAGLDYWPHVPLTVW 89 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 S+ D L + + D L+ G E GL + + Sbjct: 90 SSWEDFLSRGVEGRRLVTTSARGGTAVHRFTYAPD-DMLVFGPETTGLPQEVLDLTPHRV 148 Query: 253 HLHMPGIIKALNVSNAAAVALYIT 276 + + G ++++N+S A V LY Sbjct: 149 CIPIWGEVRSINLSTATGVVLYQA 172 >gi|255626589|gb|ACU13639.1| unknown [Glycine max] Length = 218 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALYIT 276 Q A +LG EG GL PK E ++ G +LNV+ AA++ L+ Sbjct: 88 NQHPFTKSTAFLLGNEGTGLSPKEIEICGFFVYIPQYGGGTASLNVTVAASIVLHHF 144 >gi|161870795|ref|YP_001599968.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442] gi|161596348|gb|ABX74008.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442] Length = 157 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 4/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I+R D + P +SA + ++ H Sbjct: 3 FMFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDY--HEFASL 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--AT 249 G + L++ ++ L+ G E +GL ++ A Sbjct: 61 TVYENFDDCLKALAGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSLPAA 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++N+SN AV L+ Sbjct: 121 QKIRLPMQPGSRSMNLSNTVAVILFEAWRQ 150 >gi|300313451|ref|YP_003777543.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1] gi|300076236|gb|ADJ65635.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 160 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 46/153 (30%), Gaps = 6/153 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R + P + A + ++ E+ Sbjct: 1 MFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHEYANMQVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI----KNDKIALILGAEGKGLRPKTQET- 247 + L + G+E +GL P+ +E+ Sbjct: 61 QDWDQFLAHRRQEPLFDEARMFAMTTHGSTPFAGLAFRPGDTFVFGSETRGLAPERRESF 120 Query: 248 -ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L M +++N+SN AV +Y Sbjct: 121 PTSQRIRLPMRPGNRSINLSNTVAVVVYEAWRQ 153 >gi|160888065|ref|ZP_02069068.1| hypothetical protein BACUNI_00473 [Bacteroides uniformis ATCC 8492] gi|156862376|gb|EDO55807.1| hypothetical protein BACUNI_00473 [Bacteroides uniformis ATCC 8492] Length = 175 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 3/159 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++VLD++ HNIG++ R++ AF + I + + K+A GA Sbjct: 16 EFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + + N +A+ + S G+ + + E K K A+++G E KG++ Sbjct: 76 FTVDWKYVDNSVEAVDNLKSEGYIVYSVEQAEGSVMLDELVLNKTKKYAVVMGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + + G +LNVS A + ++ Sbjct: 136 QEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFKKL 174 >gi|254516074|ref|ZP_05128134.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium NOR5-3] gi|219675796|gb|EED32162.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium NOR5-3] Length = 154 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L + L P N G I+R C + + L ++ Sbjct: 1 MLQVALYEPEIPPNTGNIMRLCANTGCALHLIKPLGFALDDKQLRRAGLDY--REFANVS 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + + LS+ + QE L+ G E +GL + Sbjct: 59 VHDSLDAMVAALDKPRIWTLSTRGTRSYTQEQFQTNDVLLFGPETRGLPVSLIDELGVHR 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ LY Sbjct: 119 CLRVPMRPDSRSLNLSNATALVLYEGLRQL 148 >gi|224014732|ref|XP_002297028.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220968408|gb|EED86756.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 542 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 26/48 (54%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 I +++G E +G+ K +E A +L M G ++ N+S A A+ L Sbjct: 422 QRPICIVMGNEERGISDKMRELADETFYLPMCGFAESFNLSVATAITL 469 >gi|218884714|ref|YP_002429096.1| SpoU rRNA methylase [Desulfurococcus kamchatkensis 1221n] gi|218766330|gb|ACL11729.1| SpoU rRNA methylase [Desulfurococcus kamchatkensis 1221n] Length = 234 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + +A++ G E GL + A + + ALN+S A A+ L+ + Sbjct: 100 FPRTRSVAILFGRESTGLTREEISKADVLVTIPANPSYPALNISQAVAIVLWELWKQRS 158 >gi|187917931|ref|YP_001883494.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia hermsii DAH] gi|119860779|gb|AAX16574.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia hermsii DAH] Length = 227 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 24/55 (43%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 K+A+ G E GL E A + M G ++ N+S A A+ Y + K Sbjct: 137 KLAIFFGTELTGLSHSVLENADLHLKIPMYGFTQSYNLSVAVAIVFYSLISRLKK 191 >gi|312149761|gb|ADQ29832.1| putative tRNA/rRNA methyltransferase [Borrelia burgdorferi N40] Length = 218 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 N+K+A+ G E GL + A + M G ++ N+S A A+ +Y K Sbjct: 126 NNKMAIFFGTELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLMRLRK 182 >gi|307331242|ref|ZP_07610366.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu 4113] gi|306883120|gb|EFN14182.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu 4113] Length = 253 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 80/237 (33%), Gaps = 16/237 (6%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-------LPHPFPVKTVPP 98 PE + L G H + AL + + + K A L D V+ Sbjct: 18 PETVLLDGFHALKHALRFGAEVRAAVTSDKAAAVELAADLADDLTETIADLLVEVEAGTL 77 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + + V V L + ++VLD+ + N+GA++R A F Sbjct: 78 RDLVPRVHPTRVAALAVRRGRQGNLDELSKRPRAAPVVVLDNPRNLGNVGAVVRLAAGFG 137 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 G++TT P + A + + + + Sbjct: 138 ATGVVTTGDIDPWHPNAVRSGAGLHFATAVER---------LPGDALPEGPLYVLDAEGE 188 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + D L G+E G+ P+ ++ AT + L M + + N++ + A+AL+ Sbjct: 189 DIRSVTIPDDALLAFGSERHGISPELRKRATRLVALPMRPQVSSYNLATSVAMALFH 245 >gi|237752582|ref|ZP_04583062.1| rRNA methylase [Helicobacter winghamensis ATCC BAA-430] gi|229376071|gb|EEO26162.1| rRNA methylase [Helicobacter winghamensis ATCC BAA-430] Length = 153 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 43/150 (28%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 Q +VL P N G I R A + + L ++ EH+ Sbjct: 1 MQFHIVLHQPRIPQNTGNIGRLCFASNTILHLIYPLGFSLTQKELKRAGMDYWEHLEVYE 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETAT- 249 ++ + + K + A + G E GL + Sbjct: 61 YADTESFFKSYFIDSNLPHFFLTTKTKIPYYKAPMQAGAYLHFGREDAGLSQEILSANQE 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ + + LY Sbjct: 121 YCYTIPMQNNARSLNLATSVGIVLYEGIRQ 150 >gi|149186958|ref|ZP_01865266.1| tRNA/rRNA methyltransferase [Erythrobacter sp. SD-21] gi|148829347|gb|EDL47790.1| tRNA/rRNA methyltransferase [Erythrobacter sp. SD-21] Length = 150 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 22/59 (37%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E G+ + + L M +++LN++ +A +AL Sbjct: 86 YDFAYRPDDILLFGKESAGVTDAVRACVDASVRLPMKPEVRSLNLATSAGLALGEALRQ 144 >gi|119936308|gb|ABM06104.1| hypothetical protein LOC79922 [Bos taurus] Length = 178 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPGIIKALNVSNAAAVALYI 275 + + L+LG EG GL Q + + + +P +++LNVS AA + L+ Sbjct: 68 CLDFLWDRPTLLVLGNEGSGLSRAVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLHS 127 Query: 276 TQNHFA 281 + Sbjct: 128 ICSQRK 133 >gi|319900584|ref|YP_004160312.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P 36-108] gi|319415615|gb|ADV42726.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P 36-108] Length = 180 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 67/159 (42%), Gaps = 3/159 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++VLD++ HNIG++ R++ AF + I + + K+A GA Sbjct: 20 EFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 79 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + + N +A+ + G+ + + E K K A+++G E KG+R Sbjct: 80 FTVDWKYVENSVEAVDNLKKEGYVVYSVEQAEGSIMLDELALDKEKKYAVVMGNEVKGVR 139 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + + G +LNVS A + ++ Sbjct: 140 QEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFKKL 178 >gi|226320776|ref|ZP_03796332.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 29805] gi|226233831|gb|EEH32556.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 29805] Length = 218 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 N+K+A+ G E GL + A + M G ++ N+S A A+ +Y K Sbjct: 126 NNKMAIFFGTELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLMRLRK 182 >gi|46580643|ref|YP_011451.1| RNA methyltransferase [Desulfovibrio vulgaris str. Hildenborough] gi|46450062|gb|AAS96711.1| RNA methyltransferase, TrmH family [Desulfovibrio vulgaris str. Hildenborough] Length = 159 Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 1/144 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL H P N G + R A + + L ++ H+P Sbjct: 1 MMHIVLYHPEIPPNTGNVARLCAATRTRLHLIEPLGFSLDDRYLKRAGLDYWPHVPLTVW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 ++ D L + + D L+ G E GL + + Sbjct: 61 ASWEDFLSRGVEGRRLVTTSARGGTAVHRFTYAPD-DMLVFGPETTGLPQEVLDLTPHRV 119 Query: 253 HLHMPGIIKALNVSNAAAVALYIT 276 + + G ++++N+S A V LY Sbjct: 120 CIPIWGEVRSINLSTATGVVLYQA 143 >gi|257066256|ref|YP_003152512.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM 20548] gi|256798136|gb|ACV28791.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM 20548] Length = 152 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N+G I R+ V + L ++ EH+ + Sbjct: 1 MFNIVLISPEHPGNVGNIGRTCVLTESRLHLIRPFKFDFSDRFLKRAGIDYWEHVDLVIH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 +L + + + + I + K D LI G E +G+ E + Sbjct: 61 DSLEEFMDYVKDKRYFLIETGTQKKYSD--VNFEDGDFLIFGREKEGIPDDLLNENKEKI 118 Query: 252 AHLHMPGIIK-ALNVSNAAAVALYITQNH 279 + M I +LN++N+ ++ LY Sbjct: 119 ITIPMTKKIDRSLNLANSVSIVLYEALRQ 147 >gi|325981842|ref|YP_004294244.1| RNA methyltransferase, TrmH family, group 2 [Nitrosomonas sp. AL212] gi|325531361|gb|ADZ26082.1| RNA methyltransferase, TrmH family, group 2 [Nitrosomonas sp. AL212] Length = 154 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++L P N G I+R + P + L ++ H I + Sbjct: 4 IILYQPEIPPNTGNIIRLCANTGMQLHLVKPLGFPLQDKQLLRAGLDY--HEFAQIIVHD 61 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253 + A + + +++ K+ ++ A + GAE +GL +T Sbjct: 62 SWADCCHNLRDHRMFAITTRGKQGYDKVSYAAGDAFLFGAESRGLPSHIMDTFPEQRRIR 121 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN A+ Y Sbjct: 122 VPMVANSRSLNLSNTVAIIAYEAWRQ 147 >gi|300778690|ref|ZP_07088548.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC 35910] gi|300504200|gb|EFK35340.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC 35910] Length = 150 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 54/149 (36%), Gaps = 1/149 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P+N G I R V + L +S H+ Sbjct: 1 MLNIVLVEPEIPNNTGNIGRLCVGTESRLHLVHPFGFVINDKNLKRSGLDYWVHLDVSEY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +++ + ++ + + S ++K + D L+ G E GL + + Sbjct: 61 ADIEEWIETVPDRSRVFLMS-SHAEKSYLETDFQDGDWLVFGKESAGLSKDVLDRFDNHL 119 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M +I++ N++N+ A + + + Sbjct: 120 TIPMSKLIRSFNIANSVAFVIGEAKRQLS 148 >gi|121634138|ref|YP_974383.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis FAM18] gi|218768949|ref|YP_002343461.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis Z2491] gi|304389096|ref|ZP_07371140.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091] gi|120865844|emb|CAM09576.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis FAM18] gi|121052957|emb|CAM09311.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis Z2491] gi|254674132|emb|CBA09916.1| hypothetical tRNA/rRNA methyltransferase [Neisseria meningitidis alpha275] gi|261391799|emb|CAX49254.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis 8013] gi|304336969|gb|EFM03159.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091] gi|319411247|emb|CBY91654.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis WUE 2594] gi|325131588|gb|EGC54295.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis M6190] gi|325139157|gb|EGC61703.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis ES14902] gi|325143107|gb|EGC65454.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis 961-5945] gi|325197552|gb|ADY93008.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis G2136] gi|325203383|gb|ADY98836.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis M01-240355] Length = 154 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E +GL ++ A L M +++N+SN AV L+ Sbjct: 91 FQKGDVLLFGPETRGLPADILDSLPAAQKIRLPMQPGSRSMNLSNTVAVILFEAWRQ 147 >gi|302766003|ref|XP_002966422.1| hypothetical protein SELMODRAFT_86381 [Selaginella moellendorffii] gi|300165842|gb|EFJ32449.1| hypothetical protein SELMODRAFT_86381 [Selaginella moellendorffii] Length = 220 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 1/96 (1%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 A S L ++ + + A +LG EG GL Sbjct: 47 SAHHVRFRHFHSLLEARDYLKGIGCDICGVEITEGAVAVHKHPFQRSTAFLLGNEGTGLS 106 Query: 242 PKTQETATSMAHLHMPG-IIKALNVSNAAAVALYIT 276 PK E ++ G +LNV+ AA++ L+ Sbjct: 107 PKEMEICDFFTYIPQVGSGTASLNVTVAASIVLHHF 142 >gi|302792753|ref|XP_002978142.1| hypothetical protein SELMODRAFT_107928 [Selaginella moellendorffii] gi|300154163|gb|EFJ20799.1| hypothetical protein SELMODRAFT_107928 [Selaginella moellendorffii] Length = 220 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 1/96 (1%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 A S L ++ + + A +LG EG GL Sbjct: 47 SAHHVRFRHFHSLLEARDYLKGIGCDICGVEITEGAVAVHKHPFQRSTAFLLGNEGTGLS 106 Query: 242 PKTQETATSMAHLHMPG-IIKALNVSNAAAVALYIT 276 PK E ++ G +LNV+ AA++ L+ Sbjct: 107 PKEMEICDFFTYIPQVGCGTASLNVTVAASIVLHHF 142 >gi|34557814|ref|NP_907629.1| putative RNA methylase [Wolinella succinogenes DSM 1740] gi|34483532|emb|CAE10529.1| PUTATIVE RNA METHYLASE [Wolinella succinogenes] Length = 153 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 2/149 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +L +VL P N G I R A + + ++ EH+ Sbjct: 1 MKLQIVLVEPRIPQNTGNIGRLCAATQSALHLIHPLGFTLSQKEIKRAGMDYWEHLELYE 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 S+L + +G L++ +K+ + L G E GL E + Sbjct: 61 WSSLEAFTEAH-PFGESHFLLTTKAKRAYFEASLPPSAYLYFGREDAGLPQVLLEAHPQA 119 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 M + M ++LN++ A + LY Sbjct: 120 MLKIPMKEGNRSLNLATATGIVLYEAIRQ 148 >gi|270295097|ref|ZP_06201298.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274344|gb|EFA20205.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 175 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 3/159 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++VLD++ HNIG++ R++ AF + I + + K+A GA Sbjct: 16 EFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITAIPPHPEMHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + + N +A+ + S G+ + + E K K A+++G E KG++ Sbjct: 76 FTVDWKYVDNSVEAVDNLKSEGYIVYSVEQAEGSVMLDELVLDKTKKYAVVMGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + + G +LNVS A + ++ Sbjct: 136 QEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFKKL 174 >gi|269218394|ref|ZP_06162248.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848 str. F0332] gi|269212253|gb|EEZ78593.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848 str. F0332] Length = 162 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + A + G E GL T+ + M +++LN++N+A++ +Y Sbjct: 96 YRETDAFLFGPEPTGLPADVIAHPAVTAAVRIPMMPHLRSLNLANSASIVVYEAWRQ 152 >gi|229577450|ref|NP_001153379.1| TAR (HIV-1) RNA binding protein 1 [Mus musculus] Length = 1579 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q +K L+LG E +G+ + + GII++LNV + A+ ++ Sbjct: 1512 QYRFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1569 >gi|148679865|gb|EDL11812.1| mCG129058 [Mus musculus] Length = 1534 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q +K L+LG E +G+ + + GII++LNV + A+ ++ Sbjct: 1467 QYRFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1524 >gi|62184725|ref|YP_219510.1| putative rRNA methylase [Chlamydophila abortus S26/3] gi|62147792|emb|CAH63538.1| putative rRNA methylase [Chlamydophila abortus S26/3] Length = 156 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 1/63 (1%) Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + G+E KGL + + +L M I++LN++ V L+ Sbjct: 83 QYYGDVALPMDGVYVFGSESKGLPEEVLKKYYNHTYYLPMQPGIRSLNLATTVGVVLFEA 142 Query: 277 QNH 279 Sbjct: 143 VRQ 145 >gi|219125428|ref|XP_002182984.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405778|gb|EEC45720.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 212 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHM---PGIIKALNVSNAAAVALYITQNHFAK 282 + L+LG+EG GLR ++ T + G + +LNVS + L+ K Sbjct: 153 SGPTILVLGSEGHGLRSLVAKSCTEFVKVPGAVDAGGVDSLNVSVTGGILLWHFLKDITK 212 >gi|294783881|ref|ZP_06749203.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp. 1_1_41FAA] gi|294479693|gb|EFG27472.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp. 1_1_41FAA] Length = 150 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268 ++ +K+ + ++ G E +G+ + + + M + ++LN+SN+ Sbjct: 75 FYATTKTKQKYSDVKYEENDFIMFGPESRGIPEEILNKNPERCITIPMIPMGRSLNLSNS 134 Query: 269 AAVALYITQNHF 280 A + LY Sbjct: 135 AVIILYEAYRQL 146 >gi|197285717|ref|YP_002151589.1| hypothetical tRNA/rRNA methyltransferase [Proteus mirabilis HI4320] gi|194683204|emb|CAR43857.1| hypothetical tRNA/rRNA methyltransferase [Proteus mirabilis HI4320] Length = 242 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 27/70 (38%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + +E N +A+I G E GL + + ++ +LN++ Sbjct: 88 WPMLAPRECGERCVKEAANKPVAVIFGRERTGLTNEELQKCDYHLYIPTNPEYGSLNLAM 147 Query: 268 AAAVALYITQ 277 A + Y + Sbjct: 148 AVQLVCYEIR 157 >gi|302552750|ref|ZP_07305092.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302470368|gb|EFL33461.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 248 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 71/238 (29%), Gaps = 10/238 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVP 97 H + L G H + A+ + + A + A L D + VP Sbjct: 9 HRLAGSTVLLDGFHALKHAVRFGAEVPVAVTADRAATLALADELAPDVRDALADLLTEVP 68 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 +T V + AL P L + ++ + +++P N+G Sbjct: 69 HETYTSFVPRPHPTAVAALAVRPSRESHLARLAHTPRTAPVVVLDNPRNLGNAGAVIRLA 128 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + G + GA H ++ + Sbjct: 129 AGFGATGVVTTGTVDPWHPTVVRGGAGLHFATAVER------LEVADLPAGPLFALDPEG 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + D L G+E GL P+ + A + L M + + N++ + A+ LY Sbjct: 183 DDIRSTKLPDDAVLAFGSERTGLSPELRARADHLLSLPMRPQVSSYNLATSVAMTLYH 240 >gi|225023964|ref|ZP_03713156.1| hypothetical protein EIKCOROL_00831 [Eikenella corrodens ATCC 23834] gi|224942989|gb|EEG24198.1| hypothetical protein EIKCOROL_00831 [Eikenella corrodens ATCC 23834] Length = 179 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 49/151 (32%), Gaps = 4/151 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 +VL P N G I+R D + P +SA + ++ H Sbjct: 24 RFMFSIVLYQPEIPPNTGNIIRLCANSGADLHLVKPLGFPLDSAKMKRAGLDY--HEFAR 81 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-- 248 + T G + L++ + +Q + G E +GL E Sbjct: 82 ISLHETFEDCLAALEGRRIFALTTKGRTRPDQAEFRPDDVFLFGPETRGLPAAILERLPE 141 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++N+SN AV LY Sbjct: 142 NQKLRLPMLPGSRSMNLSNTVAVMLYEAWRQ 172 >gi|283457724|ref|YP_003362311.1| putative rRNA methylase [Rothia mucilaginosa DY-18] gi|283133726|dbj|BAI64491.1| predicted rRNA methylase [Rothia mucilaginosa DY-18] Length = 224 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G E GL + Q+ + + M ++LN++N+A++A++ Sbjct: 160 YRPGDVFMFGPESVGLPAEVQQDPHVSERVKIPMKPGRRSLNLANSASIAVFEAWRQ 216 >gi|301096896|ref|XP_002897544.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] gi|262107004|gb|EEY65056.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4] Length = 681 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 54/157 (34%), Gaps = 5/157 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L+M V+ N+ + R+ F+ ++ + ++ A + + Sbjct: 514 QRPRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWM 573 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRP 242 P + D L++ + ++ K+ L+LG E +G+ Sbjct: 574 PLEEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPV 633 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + ++++LNV + A+ L+ Sbjct: 634 EVLQLVDVCVEIPQFELVRSLNVHVSGALVLWEYTQQ 670 >gi|237739114|ref|ZP_04569595.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31] gi|229423714|gb|EEO38761.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31] Length = 150 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 33/97 (34%), Gaps = 1/97 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + + ++ +K+ + ++ G E +G+ + Sbjct: 50 YWHLVDLKIWESFEDFLEANRNIRLFYATTKTKQKYSDVKYEENDFIMFGPESRGIPEEI 109 Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M + ++LN+SN+A V LY Sbjct: 110 LNKNPERCITIPMIPMGRSLNLSNSAVVILYEAYRQL 146 >gi|15594398|ref|NP_212186.1| spoU protein (spoU) [Borrelia burgdorferi B31] gi|218249703|ref|YP_002374583.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi ZS7] gi|221217482|ref|ZP_03588953.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 72a] gi|224533884|ref|ZP_03674469.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi CA-11.2a] gi|225549731|ref|ZP_03770696.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 118a] gi|226322036|ref|ZP_03797561.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi Bol26] gi|3915341|sp|O51081|Y052_BORBU RecName: Full=Putative tRNA/rRNA methyltransferase BB_0052 gi|2687923|gb|AAC66431.1| spoU protein (spoU) [Borrelia burgdorferi B31] gi|218164891|gb|ACK74952.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi ZS7] gi|221192760|gb|EEE18976.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 72a] gi|224512887|gb|EEF83253.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi CA-11.2a] gi|225369691|gb|EEG99139.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 118a] gi|226232626|gb|EEH31380.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi Bol26] Length = 218 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 N+K+A+ G E GL + A + M G ++ N+S A A+ +Y K Sbjct: 126 NNKMAIFFGTELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLMRLRK 182 >gi|251793795|ref|YP_003008525.1| TrmH family RNA methyltransferase [Aggregatibacter aphrophilus NJ8700] gi|247535192|gb|ACS98438.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter aphrophilus NJ8700] Length = 158 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDY--HEFADIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + T + L++ + L+ G E +G+ A Sbjct: 59 KHKTFEAFLQSEQPKRLFALTTKGTPAHSEVTFELGDYLMFGPETRGIPMDILNNMPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTIYEAWRQL 148 >gi|39974237|ref|XP_368509.1| hypothetical protein MGG_00735 [Magnaporthe oryzae 70-15] gi|145018333|gb|EDK02612.1| hypothetical protein MGG_00735 [Magnaporthe oryzae 70-15] Length = 616 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 53/289 (18%), Positives = 95/289 (32%), Gaps = 60/289 (20%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR------LDWDANLPHPFPVKTVPP--QTI 101 FLYG V L + RK++ L + + + Q + Sbjct: 305 FLYGRSVVEETLRSSRRKLYHLYIYDGLNRSRNPNDVVIEKLAQKRGVKITKLGEGHQRL 364 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA--------------------------------- 128 + + H LE +P+ P ++A Sbjct: 365 MSKMSEGRPHNNFVLEASPVPQPPIEALGPLSEVASRPGFEVSLGHQTAEDLEINGSSNF 424 Query: 129 -----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 ++ L+++LD + DP N+G ILR+A ++ ++R S + + V K+A+GA Sbjct: 425 VETEGGKHQPLVLLLDRILDPGNLGNILRTASFLGVSAVVISQRNSATLTPVALKAAAGA 484 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTI-----------GLSSDSKKPLEQEIKNDKIALI 232 E +P N L G++ + D L+ Sbjct: 485 SETLPLFACDNPASFLHNSKESGWKIYAAVAPSRSRKKSEQDVYDIEDLDPLATDPCVLV 544 Query: 233 LGAEGKGLRPKTQETATSMAHLH---MPGIIKALNVSNAAAVALYITQN 278 +G+EG+GL + + + I +LNVS AA + Sbjct: 545 VGSEGEGLPTMIKTKSHHAVTIPNSSGAHTIDSLNVSVAAGLLCGAFLR 593 >gi|53805210|ref|YP_113068.1| RNA methyltransferase [Methylococcus capsulatus str. Bath] gi|53758971|gb|AAU93262.1| RNA methyltransferase, TrmH family [Methylococcus capsulatus str. Bath] Length = 282 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 92/240 (38%), Gaps = 12/240 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGKE 108 + G+ V+A + ++ +L + + P + +PP+ + ++ G Sbjct: 41 IAGLSAVAAVFRHEPERVVRLYYDDSMKTAAGPFCAVLARLRRPYRLLPPEEMARVAG-T 99 Query: 109 AVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 +H G+ P P L + ++LD V +PHN+GAI R+ F + Sbjct: 100 VLHGGIVAAVRPREVPDLTLETAQRWAKAGAATVLLDGVGNPHNLGAIARTLAFFGLGHL 159 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + + + + + A + +R + F +G + ++ + Sbjct: 160 VLSDHPAQAGLSDAAYRVAEGGLEFLDVRRLTGAAQALRSLRPHFHVVGTALHARGIPPE 219 Query: 223 EIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNH 279 + D I L+LG E GL P T ++ + G I++LNVS AA+ Y Sbjct: 220 AVPRDRRPILLVLGNEENGLPPPTLAACETVVTIPGGGQIQSLNVSATAAILTYSLLLRQ 279 >gi|24373814|ref|NP_717857.1| RNA methyltransferase [Shewanella oneidensis MR-1] gi|24348212|gb|AAN55301.1|AE015668_2 RNA methyltransferase, TrmH family, group 1 [Shewanella oneidensis MR-1] Length = 241 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + T + +LN++ A + Y T+ Sbjct: 106 TGPVAIVFGRENHGLTNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETR 157 >gi|317128071|ref|YP_004094353.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cellulosilyticus DSM 2522] gi|315473019|gb|ADU29622.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cellulosilyticus DSM 2522] Length = 157 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R+ + + ++ +L ++ ++ Sbjct: 1 MGIHVVLHEPEIPANTGNIARTCAGTNASLHLIHPLGFSTDDRMLKRAGCDYWPNVHVEH 60 Query: 192 ISNLTDALQKMHSWGFQ-TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT 249 N+ + F + I G E KGL + Sbjct: 61 YDNIEQLFARFPEGEFFLIETSGEKYYHDFDYSDLEKDYFFIFGKETKGLPQDLIDKYKE 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + I++LN+SN AA+ +Y Sbjct: 121 RCFRIPQTDKIRSLNLSNTAAILVYEALRQ 150 >gi|260434472|ref|ZP_05788442.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp. WH 8109] gi|260412346|gb|EEX05642.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp. WH 8109] Length = 163 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 8/66 (12%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--------GIIKALNVSNAAAVALY 274 L+ G E GL +E S+ + MP G +++LN+S A A+ Y Sbjct: 95 FTFQRGDVLLFGREDTGLPEPVREACDSILTIPMPGAADDAGQGGVRSLNLSVACALVTY 154 Query: 275 ITQNHF 280 + Sbjct: 155 VAGQKL 160 >gi|196019818|ref|XP_002119047.1| hypothetical protein TRIADDRAFT_63015 [Trichoplax adhaerens] gi|190577173|gb|EDV18467.1| hypothetical protein TRIADDRAFT_63015 [Trichoplax adhaerens] Length = 289 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 65/185 (35%), Gaps = 6/185 (3%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 V + ++ + ++ + A T + ++ L + P N G I+R+ Sbjct: 99 VQNEEVEALTKTPSIDKDSAEIADHSPEKTEKSTAAPMKIV-LYNPQIPQNTGNIIRTCS 157 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 + I+ + + A ++ D+L+++ SS Sbjct: 158 VTGAELILVKPLGFE----LSDRKLKRAGLDYWDEVKISVVDSLEEILEENDDFCFFSSK 213 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKT-QETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + LI G+E GL + ++ + + M + LN+SNA ++ +Y Sbjct: 214 ATQWHTDRTYSKNSILIFGSETSGLPIEVMRKYQEKLIKIPMLAKQRCLNLSNAVSIGIY 273 Query: 275 ITQNH 279 Sbjct: 274 EAWRQ 278 >gi|126665731|ref|ZP_01736712.1| predicted rRNA methylase [Marinobacter sp. ELB17] gi|126629665|gb|EBA00282.1| predicted rRNA methylase [Marinobacter sp. ELB17] Length = 154 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 4/151 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R C + E + ++ E+ Sbjct: 1 MLNVVLYEPEIPPNTGNIIRLCANTGCKLHLIEPLGFTLEDKRMRRAGLDYSEYASVKVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-T-S 250 + L + GL++ + + L+ G E +GL ++ Sbjct: 61 KSYPAFL--HSEQPQRLFGLTTKGSHYYHEVSYQEGDYLMFGPETRGLPAPVRDALPDGH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M ++LN+SN AA+ +Y A Sbjct: 119 RLRVPMCAHSRSLNLSNTAALVVYEAWRQLA 149 >gi|290477269|ref|YP_003470190.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004] gi|289176623|emb|CBJ83432.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004] Length = 167 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 48/158 (30%), Gaps = 10/158 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R C + + L ++ E + Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQH 60 Query: 193 SNLTDA--------LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + G + L++ D L+ G E +GL Sbjct: 61 HDFHAFLVSEGLSPVNSQSPSGARLFALTTKGTPAHSNVSYQDGDYLMFGPETRGLPAYV 120 Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M +++N+SN+ AV ++ Sbjct: 121 LDNMPTEQKIRIPMLSDSRSMNLSNSVAVVVFEAWRQL 158 >gi|124025726|ref|YP_001014842.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus str. NATL1A] gi|123960794|gb|ABM75577.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus str. NATL1A] Length = 166 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 10/154 (6%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L P N G I R+ +AF+ I E L ++ H+ + Sbjct: 11 VSLFEPRIPQNTGTIGRTCLAFNMSLDIIKPTGFSFEDKYLKRAGLDYWPHVDVHLYESF 70 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + S++ I D L+ G E GL +A + Sbjct: 71 DQYKNSFKNSRIIAFTKKSNNLISN--IIYKDTDILLFGREDTGLPESIINKCEIVAGIP 128 Query: 256 MP--------GIIKALNVSNAAAVALYITQNHFA 281 MP G +++LN+S A+ + Y Sbjct: 129 MPGGENQLKTGGVRSLNLSVASGIVCYYACLQLN 162 >gi|29839847|ref|NP_828953.1| RNA methyltransferase [Chlamydophila caviae GPIC] gi|666878|gb|AAB41347.1| spoU [Chlamydophila caviae] gi|29834194|gb|AAP04831.1| RNA methyltransferase, TrmH family [Chlamydophila caviae GPIC] Length = 156 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 1/71 (1%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNA 268 LS+ + + G+E KGL + +L M I++LN++ Sbjct: 75 FCLSTKGSQYYGDVSLPMDGVYVFGSESKGLPEDVLKKYYNHCYYLPMRPGIRSLNLATT 134 Query: 269 AAVALYITQNH 279 V L+ Sbjct: 135 VGVVLFEAVRQ 145 >gi|113970074|ref|YP_733867.1| RNA methyltransferase [Shewanella sp. MR-4] gi|113884758|gb|ABI38810.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. MR-4] Length = 241 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A++ G E GL + + T + +LN++ A + Y T+ Sbjct: 105 LSGPVAIVFGRENHGLTNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETR 157 >gi|114047315|ref|YP_737865.1| RNA methyltransferase [Shewanella sp. MR-7] gi|113888757|gb|ABI42808.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. MR-7] Length = 241 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A++ G E GL + + T + +LN++ A + Y T+ Sbjct: 105 LSGPVAIVFGRENHGLTNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETR 157 >gi|169825957|ref|YP_001696115.1| putative tRNA/rRNA methyltransferase in gldA 3'region [Lysinibacillus sphaericus C3-41] gi|168990445|gb|ACA37985.1| Hypothetical tRNA/rRNA methyltransferase in gldA 3'region [Lysinibacillus sphaericus C3-41] Length = 157 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ + + ++ +L ++ + + Sbjct: 1 MPLHIVLYQPEIPANTGNIARTCAGTNTSLHLIRPLGFSTDDKMLKRAGLDYWHSVNIVY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQ-ETAT 249 ++L D ++ I SD ++ + G E GL E Sbjct: 61 HNSLDDFIEYSRDGDVYLIETYSDEPFTTHDFSNKERDIYFMFGKETTGLPKDFAYERRN 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +++LN+SN AA+ +Y Sbjct: 121 MCLRIPQSDHVRSLNLSNTAAIVIYEALRQ 150 >gi|17232034|ref|NP_488582.1| hypothetical protein alr4542 [Nostoc sp. PCC 7120] gi|17133678|dbj|BAB76241.1| alr4542 [Nostoc sp. PCC 7120] Length = 243 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 21/55 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ALI G E +GL + A + +LN+++A + Y + Sbjct: 108 QPSALIFGREDRGLSNEELIYAQRFIRIPTSPDYLSLNLASAVGICCYELAQNLT 162 >gi|261378516|ref|ZP_05983089.1| RNA methyltransferase, TrmH family, group 2 [Neisseria cinerea ATCC 14685] gi|269145065|gb|EEZ71483.1| RNA methyltransferase, TrmH family, group 2 [Neisseria cinerea ATCC 14685] Length = 154 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R D + P +SA + ++ H Sbjct: 1 MFTIVLYQPEIPPNTGNIIRLCANTGADLHLIKPLGFPLDSAKMKRAGLDY--HEFASLT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + G + L++ ++ L+ G E +GL ++ A Sbjct: 59 VHENFDDCLKALAGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSLPAVQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++N+SN AV L+ Sbjct: 119 KIRLPMQPGSRSMNLSNTVAVILFEAWRQ 147 >gi|194206115|ref|XP_001916608.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Equus caballus] Length = 1468 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q +K L+LG E +G+ + + GII++LNV + A+ ++ Sbjct: 1401 QYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1458 >gi|78779779|ref|YP_397891.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9312] gi|78713278|gb|ABB50455.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9312] Length = 237 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 78/232 (33%), Gaps = 17/232 (7%) Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + ++L T+ L + + + P + V + + + G+A Sbjct: 2 LKSGKTP-SKILVTEKWLRKNENLSKKLQPSLINIVSEEVLASAISTI-NPDGIAALVEI 59 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP---------- 170 P ++VL+ + DP N+G++ R+A+A D I+ P Sbjct: 60 SSIPNYQFNIKDDFVLVLERIQDPGNMGSLFRTALAAGVDAILLAGGAHPLSQKVLRASS 119 Query: 171 ---SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 L + + + S S KP + Sbjct: 120 GAVFHLPFLRFDGTEEEILNSLCKSLYELSNVGFKIFTTSSHNKSSKKSSKPYWEIDWTK 179 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS-NAAAVALYITQN 278 ALILG EG+G+ K QE + ++++LNV+ A + L + Sbjct: 180 STALILGNEGQGIHKKIQEAFNETITIPHSELVESLNVACVAVPLLL-ERKR 230 >gi|37520268|ref|NP_923645.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421] gi|35211261|dbj|BAC88640.1| gll0699 [Gloeobacter violaceus PCC 7421] Length = 162 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSM---AHLHMP-GIIKALNVSNAAAVALY 274 L L+ G+E +GL + + + +++LN+SNA AV L+ Sbjct: 94 CLWDFAFQPGDWLVFGSESRGLPEGLL--SDERHPVVTIPLAEPAVRSLNLSNAVAVVLF 151 Query: 275 ITQNHF 280 + Sbjct: 152 ESLRQL 157 >gi|296241772|ref|YP_003649259.1| tRNA/rRNA methyltransferase [Thermosphaera aggregans DSM 11486] gi|296094356|gb|ADG90307.1| tRNA/rRNA methyltransferase (SpoU) [Thermosphaera aggregans DSM 11486] Length = 232 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 22/56 (39%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 K+AL+ G E GL + + + LNVS A A+ L+ K Sbjct: 104 GKLALVFGRESTGLTREELSKTDFLVSIPGNPEYPVLNVSQAVAIFLWELWKIRGK 159 >gi|256028386|ref|ZP_05442220.1| 23S rRNA methyltransferase [Fusobacterium sp. D11] gi|289766311|ref|ZP_06525689.1| 23S rRNA methyltransferase [Fusobacterium sp. D11] gi|289717866|gb|EFD81878.1| 23S rRNA methyltransferase [Fusobacterium sp. D11] Length = 150 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P+N G I RS V + + + + ++ + + Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTNTKLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKVWDSF 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254 + L+ + K ++ G E +G+ + + Sbjct: 63 EEFLEANKGIRLFYATTKTKQKYCD--VKYEKNDYIMFGPESRGIPEDILNKNPERCITI 120 Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280 M + ++LN+SN+A V LY Sbjct: 121 PMIPMGRSLNLSNSAVVILYEAYRQL 146 >gi|158294780|ref|XP_001237715.2| AGAP005789-PA [Anopheles gambiae str. PEST] gi|157015725|gb|EAU76501.2| AGAP005789-PA [Anopheles gambiae str. PEST] Length = 1402 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q K L+LG E GL + + + G++++LNV A+ ++ Sbjct: 1336 HQLQFPKKSVLVLGHEKNGLPAEIIRHLDLIGEIPQFGVVRSLNVHVTGAIFMWEYAKQ 1394 >gi|188993889|ref|YP_001928141.1| probable SpoU rRNA methylase family protein [Porphyromonas gingivalis ATCC 33277] gi|188593569|dbj|BAG32544.1| probable SpoU rRNA methylase family protein [Porphyromonas gingivalis ATCC 33277] Length = 180 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 23/47 (48%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + ALI G E KG+R + + + G +LNVS A + ++ Sbjct: 122 RYALIFGNEVKGVRQEAIDLCDLCLEIPQFGTKHSLNVSVTAGIVIW 168 >gi|220678250|emb|CAX14273.1| novel protein similar to H.sapiens TARBP1, TAR (HIV-1) RNA binding protein 1 (TARBP1) [Danio rerio] Length = 580 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + + + L+ +K L+LG E +G+ + + G+ ++LNV Sbjct: 500 YWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQLLDVCVEIPQFGVTRSLNV 559 Query: 266 SNAAAVALYITQNH 279 +AA+ ++ Sbjct: 560 HVSAALLVWEYTRQ 573 >gi|254419188|ref|ZP_05032912.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3] gi|196185365|gb|EDX80341.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3] Length = 149 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 47/144 (32%), Gaps = 2/144 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + P N+GA +R + F + + + + ++A R ++ Sbjct: 3 LALFQPDIPQNVGACIRLSACFGVELHVVEPTGFRFDDRAMKRAALDYGPLSHMTRHADW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + PL + + L+ G E G + + Sbjct: 63 DAFQRDRPAGRLILFTTRG--ATPLSDFVFHPDDTLLFGKETSGAPDYVHAAVDARVVIP 120 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 + ++LN+S A +AL+ Sbjct: 121 LRPEARSLNLSVTAGIALWEGLRQ 144 >gi|298292455|ref|YP_003694394.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506] gi|313471749|sp|D7A3L6|TRML_STAND RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL gi|296928966|gb|ADH89775.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506] Length = 158 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 51/148 (34%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L + L + N G + R+ + I P A ++ L+ R Sbjct: 1 MTLALALYEPDIAQNAGTLARAVACLGLELHIVEPAGFPVGDAGFRRAGMDYLDRAVIRR 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 ++ + + G + + ++ + ++LG E G+ E+A + Sbjct: 61 HASFKAFEEWRRAEGRRLVLATTRGAVAHVDFAFTETDVVLLGRESAGVPEAVHESADAR 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + + ++LNV+ A A+ L Sbjct: 121 IVIPLNEGARSLNVALAGAMILGEALRQ 148 >gi|126663147|ref|ZP_01734145.1| putative SpoU rRNA methylase family protein [Flavobacteria bacterium BAL38] gi|126624805|gb|EAZ95495.1| putative SpoU rRNA methylase family protein [Flavobacteria bacterium BAL38] Length = 175 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 67/157 (42%), Gaps = 3/157 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + + ++++LD + HNIG++ R++ AF + I + + + K+A GA Sbjct: 16 EFKEAQKTPIIVILDDIRSLHNIGSVFRTSDAFLIEKIYLCGITATPPNKEIHKTALGAT 75 Query: 185 EHIPYIRISNL---TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 E + + ++ L++ + + + Q N K ALI G E KG+ Sbjct: 76 ETVTWEYAKDVLEVVHQLKQENVKVYSVEQTENAIMLDDFQPETNTKYALIFGNEVKGVS 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + + + G +LN+S +A + ++ Sbjct: 136 QEAINLSDGVIEIPQLGSKHSLNISVSAGIVIWDLFQ 172 >gi|281355511|ref|ZP_06242005.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] gi|281318391|gb|EFB02411.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] Length = 157 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGII-KALNVSNAAAVALYIT 276 L+ G E GL P+ + S + M G ++LN++NAA++ LY Sbjct: 87 CFWDAQYRPGDYLVFGRESSGLPPEFYDRYRSRLYRIPMNGRFHRSLNLANAASIVLYEA 146 Query: 277 QN 278 Sbjct: 147 LR 148 >gi|218191897|gb|EEC74324.1| hypothetical protein OsI_09608 [Oryza sativa Indica Group] Length = 1489 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K L+LG E +G+ + + GI+++LNV + A+A++ Sbjct: 1427 HFSFPSKTVLVLGREKEGIPVDIIHVLDACVEIPQLGIVRSLNVHVSGAIAVWEYTRQ 1484 >gi|166710194|ref|ZP_02241401.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 158 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + D A + G E +GL + E+ L M ++LN+SN AV ++ Sbjct: 90 YDTPQFADGDAFLFGPETRGLPTEVLESIPPQHRLRLPMRPGNRSLNLSNTVAVMVFEAW 149 Query: 278 NHFA 281 + Sbjct: 150 RQWN 153 >gi|70950868|ref|XP_744721.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56524790|emb|CAH77939.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 233 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 3/141 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +V+ ++ NIG I+RS VAF+ I R S + Sbjct: 27 MYVVIYNIGKKKNIGNIVRSCVAFNVSEIFVVGRNKKE--TSFFGSMGTHGYIKIRYFTN 84 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + ++ ++ P+ ++ N IA + G EG G+ + + + Sbjct: 85 MIELKQYLNNNDILLYACEITNQSIPITEQPFNKDIAFLFGNEGTGISEQIINMCDKIIY 144 Query: 254 LHMPGI-IKALNVSNAAAVAL 273 + G +LNVS + A+ L Sbjct: 145 IPQYGNGTASLNVSVSCAIIL 165 >gi|315231328|ref|YP_004071764.1| tRNA:Cm32/Um32 methyltransferase [Thermococcus barophilus MP] gi|315184356|gb|ADT84541.1| tRNA:Cm32/Um32 methyltransferase [Thermococcus barophilus MP] Length = 245 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 23/60 (38%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + KI + G E KGL + E + +N+S+A AV LY K Sbjct: 101 FLYGGKIGIFFGRESKGLSNEELEKMDFTVTIPTSEEYPVMNLSHAVAVVLYEIYKQRVK 160 >gi|225549196|ref|ZP_03770169.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 94a] gi|225370054|gb|EEG99494.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 94a] Length = 218 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 N+K+A+ G E GL + A + M G ++ N+S A A+ +Y K Sbjct: 126 NNKMAIFFGTELTGLSAEVLGAADLYVKIPMHGFTQSYNISVAVAIVMYSLLMRLRK 182 >gi|313207195|ref|YP_004046372.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM 15868] gi|312446511|gb|ADQ82866.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM 15868] gi|315022402|gb|EFT35429.1| 23S rRNA methyltransferase [Riemerella anatipestifer RA-YM] gi|325335365|gb|ADZ11639.1| rRNA methylase [Riemerella anatipestifer RA-GD] Length = 161 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 64/152 (42%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 +++ N ++ ++L+H+ P NIG ILR+A A ++ S + ++ Sbjct: 5 HHEIINSKHNKEISLILEHLQSPENIGLILRTAEAMGVQKVVILSDNFRQLSPRIKRTTR 64 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 A ++ I +++ +A+ ++ + ++ G E G+ Sbjct: 65 SAENNLNIIFVNSWEEAINHFEKNTHFYALEKTNKSVDYTTFEYHFPCVIVCGNEKDGVS 124 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 K E T+ H++M G +LNV+ A + L Sbjct: 125 NKALEKCTNHLHINMYGKNTSLNVAIATGILL 156 >gi|254526789|ref|ZP_05138841.1| RNA methyltransferase TrmH, group 2 [Prochlorococcus marinus str. MIT 9202] gi|221538213|gb|EEE40666.1| RNA methyltransferase TrmH, group 2 [Prochlorococcus marinus str. MIT 9202] Length = 160 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 9/68 (13%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---------IIKALNVSNAAAVAL 273 L+ G E GL + + + MP +++LN+S A +A+ Sbjct: 88 FKFKQDDILLFGREDLGLPDYIIDKTDFLISIFMPNLQTGNNAQKGVRSLNLSVACGIAI 147 Query: 274 YITQNHFA 281 Y Sbjct: 148 YEAHKQIN 155 >gi|296168816|ref|ZP_06850498.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896519|gb|EFG76166.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 154 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E GL T A + M ++LN+SNAAAVA+Y Sbjct: 89 VRYRPGDVLLFGPEPTGLDAATLADAHITERVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 147 >gi|325917204|ref|ZP_08179431.1| rRNA methylase, putative, group 2 [Xanthomonas vesicatoria ATCC 35937] gi|325536594|gb|EGD08363.1| rRNA methylase, putative, group 2 [Xanthomonas vesicatoria ATCC 35937] Length = 158 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + D A + G E +GL + E+ L M ++LN+SN AV ++ Sbjct: 90 YDTPQFADGDAFLFGPETRGLPAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAW 149 Query: 278 NHFA 281 + Sbjct: 150 RQWN 153 >gi|315445821|ref|YP_004078700.1| rRNA methylase SpoU family [Mycobacterium sp. Spyr1] gi|315264124|gb|ADU00866.1| predicted rRNA methylase SpoU family [Mycobacterium sp. Spyr1] Length = 154 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E GL T T + M ++LN+SNAAAVA+Y Sbjct: 91 YEPGDVLMFGPEPTGLDELTLADPHITEQVRIPMLSGRRSLNLSNAAAVAVYEAWRQ 147 >gi|294626395|ref|ZP_06704996.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599280|gb|EFF43416.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 158 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + D A + G E +GL + E+ L M ++LN+SN AV ++ Sbjct: 90 YDTPQFADGDAFLFGPETRGLPAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAW 149 Query: 278 NHFA 281 + Sbjct: 150 RQWN 153 >gi|168022298|ref|XP_001763677.1| predicted protein [Physcomitrella patens subsp. patens] gi|162685170|gb|EDQ71567.1| predicted protein [Physcomitrella patens subsp. patens] Length = 223 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 47/169 (27%), Gaps = 9/169 (5%) Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + L +VL P N G+I R+ A + E + L ++ Sbjct: 29 WGEVAERDQQQRLLQVVLVSPQIPGNTGSIARTCAATCVGLHLVEPMGFKVEDSKLRRAG 88 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGK 238 + + D + + + L+ G+E Sbjct: 89 LDYWPFVVVRVHKSWDDFFTYFQEQEGEKRLLAFTKKGRTIHTDVKYKAGDWLVFGSEVD 148 Query: 239 GLRPKTQETATS------MAHLHMPGI-IKALNVSNAAAVALYITQNHF 280 GL E S M +++LN+S AA + +Y Sbjct: 149 GLPAAILEQCRSGEFAGGSVRFPMNDSYVRSLNLSVAAGIGVYEALRQL 197 >gi|21229687|ref|NP_635604.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766564|ref|YP_241326.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|188989626|ref|YP_001901636.1| RNA methyltransferase [Xanthomonas campestris pv. campestris str. B100] gi|21111170|gb|AAM39528.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66571896|gb|AAY47306.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|167731386|emb|CAP49561.1| RNA methyltransferase [Xanthomonas campestris pv. campestris] Length = 158 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + D A + G E +GL + E+ L M ++LN+SN AV ++ Sbjct: 90 YDTPQFADGDAFLFGPETRGLPAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAW 149 Query: 278 NHFA 281 + Sbjct: 150 RQWN 153 >gi|21241004|ref|NP_640586.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] gi|294665610|ref|ZP_06730889.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|21106293|gb|AAM35122.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] gi|292604613|gb|EFF47985.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 158 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + D A + G E +GL + E+ L M ++LN+SN AV ++ Sbjct: 90 YDTPQFADGDAFLFGPETRGLPAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAW 149 Query: 278 NHFA 281 + Sbjct: 150 RQWN 153 >gi|78045792|ref|YP_361967.1| TrmH family tRNA methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925841|ref|ZP_08187210.1| rRNA methylase, putative, group 2 [Xanthomonas perforans 91-118] gi|78034222|emb|CAJ21867.1| tRNA/rRNA methyltransferase, SpoU class; TrmH family [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543672|gb|EGD15086.1| rRNA methylase, putative, group 2 [Xanthomonas perforans 91-118] Length = 158 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + D A + G E +GL + E+ L M ++LN+SN AV ++ Sbjct: 90 YDTPQFADGDAFLFGPETRGLPAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAW 149 Query: 278 NHFA 281 + Sbjct: 150 RQWN 153 >gi|289664985|ref|ZP_06486566.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669885|ref|ZP_06490960.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 158 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +D A + G E +GL + E+ L M ++LN+SN AV ++ Sbjct: 90 YDTPQFSDGDAFLFGPETRGLPTEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAW 149 Query: 278 NHFA 281 + Sbjct: 150 RQWN 153 >gi|216264824|ref|ZP_03436816.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 156a] gi|223889195|ref|ZP_03623784.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 64b] gi|215981297|gb|EEC22104.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 156a] gi|223885444|gb|EEF56545.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 64b] gi|312148144|gb|ADQ30803.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi JD1] Length = 218 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 N+K+A+ G E GL + A + M G ++ N+S A A+ +Y K Sbjct: 126 NNKMAIFFGTELTGLSAEVLGAADLYVKIPMHGFTQSYNISVAVAIVMYSLLMRLRK 182 >gi|313471802|sp|C7BSD3|TRML_PHOAA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL Length = 162 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 45/153 (29%), Gaps = 5/153 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L ++ E + Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQH 60 Query: 193 SNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA- 248 + L+ G L + L+ G E +GL + Sbjct: 61 HDYHSFLENEGVTGESFARLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPSYVLDNMP 120 Query: 249 -TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV ++ Sbjct: 121 PQQKIRIPMLADSRSMNLSNSVAVVVFEAWRQL 153 >gi|256786656|ref|ZP_05525087.1| rRNA methylase [Streptomyces lividans TK24] gi|289770551|ref|ZP_06529929.1| rRNA methylase [Streptomyces lividans TK24] gi|289700750|gb|EFD68179.1| rRNA methylase [Streptomyces lividans TK24] Length = 261 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 80/243 (32%), Gaps = 20/243 (8%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP------VKT 95 H + + L G H + AL + + T + L L + Sbjct: 19 HRNAGRCVLLDGFHALKHALRFGAEVP--VAVTSDRAGALALAGELAPDVREVLAGLLTE 76 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILR 152 V + +V + AL P + L+ ++VLD + N GA++R Sbjct: 77 VSREAYASLVARPHPTAVAALAVRPSRAAGLEALAHTPRRAPVVVLDQPRNLGNAGAVIR 136 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 A F G++TT P V+ A + ++ + Sbjct: 137 LAAGFGATGVVTTGTLDPWHPTVVRGGAGLHFATVVER---------LEVAGLPPGPLFA 187 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + D L G+E GL P+ + A + L M + + N++ + A+ Sbjct: 188 LDPEGEDIRGLELPDDALLAFGSERSGLTPELRARADRLVALPMRPQVSSYNLATSVAMT 247 Query: 273 LYI 275 LY Sbjct: 248 LYH 250 >gi|90416184|ref|ZP_01224116.1| tRNA/rRNA methyltransferase [marine gamma proteobacterium HTCC2207] gi|90331909|gb|EAS47123.1| tRNA/rRNA methyltransferase [marine gamma proteobacterium HTCC2207] Length = 154 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYIT 276 + AL+ G E +GL ++ + L M ++LN+SN ++ +Y Sbjct: 85 CYSSARFEEGDALLFGPETRGLPADVRDGLGTEQVLRLPMQKESRSLNLSNTVSIIVYEA 144 Query: 277 QNHF 280 Sbjct: 145 WRQL 148 >gi|300857062|ref|YP_003782046.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528] gi|300437177|gb|ADK16944.1| predicted rRNA methylase, SpoU class [Clostridium ljungdahlii DSM 13528] Length = 155 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 50/151 (33%), Gaps = 4/151 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ V + + L ++ +++ Sbjct: 1 MSLNIVLFQPEIPQNTGNIARTCVLTGSKLHLIKPLGFSLDEKHLRRAGLDYWKYLDLTL 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250 + + +K F K + D ++ G E GL + +++A Sbjct: 61 YDSYEELREKYKGGTFYFSTTHG--KNFYHEAKFKDGDFIVFGRETCGLPDEIRDSAPEK 118 Query: 251 MAHLHMPGI-IKALNVSNAAAVALYITQNHF 280 + M ++LN+SN A+ Y Sbjct: 119 CIRVPMIKTSTRSLNLSNTVAIVAYEALRQI 149 >gi|304415209|ref|ZP_07395920.1| putative RNA methyltransferase [Candidatus Regiella insecticola LSR1] gi|304282943|gb|EFL91395.1| putative RNA methyltransferase [Candidatus Regiella insecticola LSR1] Length = 260 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 23/73 (31%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + E +AL+ G E GL + + +LN+ Sbjct: 86 HAWPMLHPRECGVKSVSEAHFAPVALVFGRERSGLTNHELQKCHFHVEIPTNPEYSSLNL 145 Query: 266 SNAAAVALYITQN 278 + A V Y +N Sbjct: 146 AMAVQVIAYEIRN 158 >gi|224076677|ref|XP_002196774.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1 homolog [Taeniopygia guttata] Length = 198 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 11/164 (6%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + L +VL+H+ DP N+GA+LRSA D ++ T+ S + V++K+++GA+E Sbjct: 29 ERGNRQLLWLVLEHIQDPMNLGALLRSAYFLGVDRVVATRGNSCPLTPVVSKASAGAMEV 88 Query: 187 IPYIRISNLTDALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 +L L+ + G+ + + + + + +++G+EG+G Sbjct: 89 FDVYGTDDLQGFLKAKSAEGWEVVGTVSRPEDVEDVPVISCSEFQWDKPVIVVIGSEGEG 148 Query: 240 LRPKTQETATSMAHLH----MPGIIKALNVSNAAAVALYITQNH 279 L +TQ+ M + + + +LNVS AA + L+ + Sbjct: 149 LSLETQQQCQRMLAIPPGRALHPGLDSLNVSVAAGILLHSICSQ 192 >gi|221503013|gb|EEE28723.1| RNA methylase, putative [Toxoplasma gondii VEG] Length = 2898 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + LE + K AL+LGAE +GL + + G+I++LNV AA+ ++ Sbjct: 2832 QMLENARFDRKTALVLGAEKEGLPAALLALMDACIEIPQLGLIRSLNVHVTAAMVVWEYT 2891 Query: 278 NH 279 Sbjct: 2892 KQ 2893 >gi|221485609|gb|EEE23890.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 2905 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + LE + K AL+LGAE +GL + + G+I++LNV AA+ ++ Sbjct: 2839 QMLENARFDRKTALVLGAEKEGLPAALLALMDACIEIPQLGLIRSLNVHVTAAMVVWEYT 2898 Query: 278 NH 279 Sbjct: 2899 KQ 2900 >gi|237842689|ref|XP_002370642.1| RNA methyltransferase, TrmH family domain-containing protein [Toxoplasma gondii ME49] gi|211968306|gb|EEB03502.1| RNA methyltransferase, TrmH family domain-containing protein [Toxoplasma gondii ME49] Length = 2899 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + LE + K AL+LGAE +GL + + G+I++LNV AA+ ++ Sbjct: 2833 QMLENARFDRKTALVLGAEKEGLPAALLALMDACIEIPQLGLIRSLNVHVTAAMVVWEYT 2892 Query: 278 NH 279 Sbjct: 2893 KQ 2894 >gi|15603378|ref|NP_246452.1| hypothetical protein PM1513 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721900|gb|AAK03597.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 158 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDY--HEFAEIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + T + L++ Q L+ G E +G+ ++ Sbjct: 59 RHKTFETFLATEQPKRLFALTTKGSPAHSQVQFELGDYLMFGPESRGIPMSILDSLPMAQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AVA+Y Sbjct: 119 KIRIPMTENSRSMNLSNSVAVAVYEAWRQL 148 >gi|296328651|ref|ZP_06871168.1| TrmH family RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154250|gb|EFG95051.1| TrmH family RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 150 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P+N G I RS V + + + + ++ + + Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTNTTFHLIKPLGFSLDEKQVKRAGMDYWHLVDLKIWESF 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254 + L+ + + + ++ G E +G+ + + Sbjct: 63 EEFLEANKGIRLFYATTKTKQRYSD--VKYEENDYIMFGPESRGIPEDILNKNPERCITI 120 Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280 M + ++LN+SN+A + LY Sbjct: 121 PMIPMGRSLNLSNSAVIILYEAYRQL 146 >gi|255947260|ref|XP_002564397.1| Pc22g03560 [Penicillium chrysogenum Wisconsin 54-1255] gi|211591414|emb|CAP97644.1| Pc22g03560 [Penicillium chrysogenum Wisconsin 54-1255] Length = 597 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 56/350 (16%), Positives = 107/350 (30%), Gaps = 83/350 (23%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64 K + ++ + K +T+ +YG V AAL Sbjct: 219 SKDEPREKEPARPRAHRVTHSMPERVKDNVKVPDTIPYTTPASEF-IYGTGAVEAALRCS 277 Query: 65 SRKIFQLLATKNALARL------DWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGL-- 114 R++++L ++ L L VK + + H G Sbjct: 278 RRQLYKLYIYQSTEEELTAAKVTIRKLALSKNVAVKMAFAGWDRLMDKMSAGRPHNGCIL 337 Query: 115 ---------------------------------------------ALETAPLLSPTLDAV 129 + + Sbjct: 338 EASPLPKLPVRSLQAVPSISEEYFRTELAPQTREEAAVNGTDDRIQIHHPSPPPHGTEQR 397 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++++LD V D N+GAI+RS+ D I+ R S S + KS++GA E++P Sbjct: 398 HRYPIVLLLDGVVDTGNMGAIIRSSYFLGVDAIVLAGRNSAPLSPITIKSSAGAAENMPI 457 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--------------KNDKIALILGA 235 + + N D +Q+ G++ + ++ + +++G+ Sbjct: 458 LHVKNEVDFIQRSQQNGWRFYAADAPLPGSVQLDHIPADGDQSGAKLPITTAPSVIMMGS 517 Query: 236 EGKGLRPKTQETATSMAHLHM------------PGIIKALNVSNAAAVAL 273 E GL + A ++ + P I +LNVS AAA+ + Sbjct: 518 EATGLSSHIKSHANAIISIPGARQSSILGVESDPARIDSLNVSVAAALLM 567 >gi|309387057|gb|ADO67778.1| TpaI [Nocardiopsis sp. TFS65-07] Length = 269 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 99/259 (38%), Gaps = 4/259 (1%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 + +++ + S S + + + ++N I + + D Sbjct: 10 PSDPAIRRIIDVTKPS--RSNIKTTLIEDPEPLVQSINAGVEFIEIYFSDATPVDPKIAD 67 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + P++ V ++KI E + L P + D ++VLD V Sbjct: 68 LCEKNRIPIRLVDYTVVNKIFKGERKAKAFGLARVPRPAKFHDIENRPGDIIVLDGVKIV 127 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIGAI+R+++ GI+ S + AS I +++ A + Sbjct: 128 GNIGAIVRTSLGLGAAGIVLIDSDLTSIADRRLLRASRGYVFSLPIVLTDRESAASFIRD 187 Query: 205 WGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 G + L S + PL++ + K+ L+ G+E G + +E A++ + M ++L Sbjct: 188 SGVELAVLDSHGETPLKEIGNIDRKMTLLFGSEKGGPSERLRELASTTVSIPMISSTESL 247 Query: 264 NVSNAAAVALYITQ-NHFA 281 NVS + V L+ + + Sbjct: 248 NVSVSVGVTLHQRVERNIS 266 >gi|289705731|ref|ZP_06502115.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58] gi|289557571|gb|EFD50878.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58] Length = 256 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G EG GL + + ++++ + G +++N AA +A++ Sbjct: 178 FDFPRACVLVFGQEGPGLSAEVRAASSAVLSIAQYGSTRSINAGVAAGIAMHAWIRQ 234 >gi|222149594|ref|YP_002550551.1| RNA methylase [Agrobacterium vitis S4] gi|221736576|gb|ACM37539.1| RNA methylase [Agrobacterium vitis S4] Length = 279 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 93/250 (37%), Gaps = 13/250 (5%) Query: 45 QPENLFLYG---VHTVSAALNNPSRKI-FQLLATKNALARLDWDANL-PHPFPVKTVPPQ 99 + G + + AA LL +N +A L + P PV Sbjct: 29 REGRFIAEGTVVLRMLLAAHLAGRGICAEALLLLENRVAGLQPLLDQWPDDLPVYVASAA 88 Query: 100 TIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 +D I G V + TAP + + ++ L++V +++ N+GA+ R+A Sbjct: 89 VLDAIAGFHLHRGVLALGSRLTAPDATQLIASLPQRALVLVGCGISNHDNVGAMFRNATG 148 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F D ++ + + + G++ +PY R + L + + GF L+ Sbjct: 149 FCADAVLLDETSCDPLYRKALRVSVGSVLTMPYAREHSAIALLSALDAAGFLVAALTPSG 208 Query: 217 KKPLEQEIK----NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + ++AL++G EG+GL + + +LN+ A+ +A Sbjct: 209 TTEIGDIASGLGGQQRLALVVGTEGEGLPADVLARF-MTVRIAQSPQLDSLNLGTASGIA 267 Query: 273 LYITQNHFAK 282 L+ K Sbjct: 268 LHSAARALGK 277 >gi|239916760|ref|YP_002956318.1| rRNA methylase [Micrococcus luteus NCTC 2665] gi|281414782|ref|ZP_06246524.1| rRNA methylase [Micrococcus luteus NCTC 2665] gi|239837967|gb|ACS29764.1| rRNA methylase [Micrococcus luteus NCTC 2665] Length = 234 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G EG GL + + ++++ + G +++N AA +A++ Sbjct: 163 FDFPRACVLVFGQEGPGLSAEVRAASSAVLSIAQYGSTRSINAGVAAGIAMHAWIRQ 219 >gi|209527558|ref|ZP_03276059.1| RNA methyltransferase, TrmH family, group 1 [Arthrospira maxima CS-328] gi|209491981|gb|EDZ92335.1| RNA methyltransferase, TrmH family, group 1 [Arthrospira maxima CS-328] Length = 255 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 51/150 (34%), Gaps = 3/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE---SAVLAKSASGALEH 186 + +L+ + + ++++ + E AV A+ + + Sbjct: 12 KIRIVLVEPAGALNVGSCARVMKNMGLTQMVLVNPHCDPMSCEAKTMAVHAQDVLESAQI 71 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + + + + + ++ + + + + + ALI G E +GL Sbjct: 72 VDSLPPALIGCQKAIATTARDRSFDRTLEHPRTTLPWLLHSPAALIFGPEDRGLSNTELN 131 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276 A + + ++LN++ A AV Y Sbjct: 132 YAQRIVRIPSSSAYESLNLAQAVAVCCYEL 161 >gi|254805689|ref|YP_003083910.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis alpha14] gi|254669231|emb|CBA08073.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis alpha14] Length = 154 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E +GL ++ A L M +++N+SN AV L+ Sbjct: 91 FQKGDVLLFGPETRGLPADILDSLPAAQKIRLPMQPGCRSMNLSNTVAVILFEAWRQ 147 >gi|221133855|ref|ZP_03560160.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Glaciecola sp. HTCC2999] Length = 238 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 25/71 (35%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + + QE + +AL+ G E GL + + + +LN++ Sbjct: 87 PWPMLTPRECGVKMVQEGQKGPVALVFGRENNGLSNEELQLCHFHVCIPANPEYSSLNLA 146 Query: 267 NAAAVALYITQ 277 A Y + Sbjct: 147 AAVQTLCYEIR 157 >gi|19704144|ref|NP_603706.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714356|gb|AAL95005.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 150 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 1/72 (1%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268 ++ +K+ + ++ G E +G+ + + M + ++LN+SN+ Sbjct: 75 FYATTKTKQRYSDVKYEENDYIMFGPESRGIPEDILNKNPERCITIPMIPMGRSLNLSNS 134 Query: 269 AAVALYITQNHF 280 A + LY Sbjct: 135 AVIILYEAYRQL 146 >gi|222624007|gb|EEE58139.1| hypothetical protein OsJ_09050 [Oryza sativa Japonica Group] Length = 1695 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K L+LG E +G+ + + GI+++LNV + A+A++ Sbjct: 1633 HFSFPSKTVLVLGREKEGIPVDIIHVLDACVEIPQLGIVRSLNVHVSGAIAVWEYTRQ 1690 >gi|108705676|gb|ABF93471.1| RNA methyltransferase, TrmH family protein, expressed [Oryza sativa Japonica Group] Length = 1727 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K L+LG E +G+ + + GI+++LNV + A+A++ Sbjct: 1665 HFSFPSKTVLVLGREKEGIPVDIIHVLDACVEIPQLGIVRSLNVHVSGAIAVWEYTRQ 1722 >gi|108798157|ref|YP_638354.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS] gi|119867253|ref|YP_937205.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS] gi|126433816|ref|YP_001069507.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] gi|108768576|gb|ABG07298.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS] gi|119693342|gb|ABL90415.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS] gi|126233616|gb|ABN97016.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] Length = 179 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 45/149 (30%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++ N G +R C+ + R + + +G H Sbjct: 1 MFKVMFYSPRIAPNTGNAIRMVAGTGCELHL--VRPLGFDLSEPKLRRAGLDYHDLASVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 + ++ + L+ G E GL +T T+ Sbjct: 59 VHDDLPAAWDAVLPASVYAFTAHATVSFADVDYRPGDVLMFGPEPTGLDAETLADPHITA 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNAAAVA+Y Sbjct: 119 QVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 147 >gi|282858919|ref|ZP_06268059.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010] gi|282588301|gb|EFB93466.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010] Length = 181 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 5/159 (3%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA- 183 L++VLD V +N+G++ RS AF + + + + K+A G Sbjct: 16 EFKEANKLPLVVVLDDVRSLYNVGSVFRSGDAFRITAVYLCGITATPPNTEIHKTALGGE 75 Query: 184 ----LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 ++ + + Q + + + + S+ + A+I+G E KG Sbjct: 76 DSVDWKYFEHTEDAIKALHSQGYYVYCVEQVEGSTKLQNLQSTLDTTQHYAIIMGNEVKG 135 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ + + + + G +LNVS A + ++ Sbjct: 136 VKQSVVDLSDNCLEIPQFGTKHSLNVSTTAGIVIWEFAK 174 >gi|167626500|ref|YP_001677000.1| RNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596501|gb|ABZ86499.1| RNA methyltransferase, SpoU family [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 163 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 50/156 (32%), Gaps = 3/156 (1%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 L + + + L P N G I+R + E L ++ Sbjct: 2 LQTGLDDMINIALYEPEIPPNTGNIIRLCANAGAKLHLIEPLGFKLEDKQLRRAGLDY-- 59 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 H + + ++ +K+ Q N L+ G E +GL Sbjct: 60 HEFADLKIYKNFDEFYQKNKQNKIWACTTKAKQYYHQVNFNYDDILLFGPETRGLPIDVL 119 Query: 246 ETATSM-AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M ++LN+SN+ AV LY N+ Sbjct: 120 KLLEKTQLKIPMHKNSRSLNLSNSVAVILYGALNNI 155 >gi|295397737|ref|ZP_06807808.1| RNA methyltransferase [Aerococcus viridans ATCC 11563] gi|294974023|gb|EFG49779.1| RNA methyltransferase [Aerococcus viridans ATCC 11563] Length = 171 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 4/158 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + N +L + + NI + + A++ Sbjct: 1 MTNHIVLFEPEIPANTGNIARTCAATDTHLHLIEPLGFKTDDKHLKRAGLDYWNAVDITY 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQET 247 + + + L + S ++ I L+ G E GL + Sbjct: 61 HANLDAFMEYLGDNQLYLVTKFANHVYSDIDYGNNDQDQDIFLMFGKETTGLPEAFMRAH 120 Query: 248 ATSMAHLHMPGI-IKALNVSNAAAVALYITQNH--FAK 282 + M +++LN+SN AA+ +Y Q F K Sbjct: 121 EDQCIRIPMDDTHVRSLNLSNCAALVIYEVQRQQSFNK 158 >gi|331005926|ref|ZP_08329274.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC1989] gi|330420282|gb|EGG94600.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC1989] Length = 276 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 24/71 (33%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + E +A++ G E +GL + H+ +LN++ Sbjct: 101 PWPLVTPRECADRSYHESSTHPVAIVFGREDRGLTNEELHKCNYHVHIPSNPDYSSLNLA 160 Query: 267 NAAAVALYITQ 277 A V Y + Sbjct: 161 AAVQVIAYEVR 171 >gi|194679306|ref|XP_614988.4| PREDICTED: TAR (HIV-1) RNA binding protein 1, partial [Bos taurus] Length = 1407 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K L+LG E +G+ + + GII++LNV + A+ ++ Sbjct: 1341 YCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1397 >gi|302773363|ref|XP_002970099.1| hypothetical protein SELMODRAFT_35012 [Selaginella moellendorffii] gi|300162610|gb|EFJ29223.1| hypothetical protein SELMODRAFT_35012 [Selaginella moellendorffii] Length = 240 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 29/89 (32%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + + + + A+I G E +G + Sbjct: 104 WLDVEVWNCAKDCIQALRSRGYRIAVTSTGHDTVSICEMDWTIPTAVIFGNEHEGASDYS 163 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273 A + + M G++ +LNVS AA + + Sbjct: 164 TSEADILCGIPMFGMVDSLNVSVAAGILM 192 >gi|257456092|ref|ZP_05621295.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580] gi|257446550|gb|EEV21590.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580] Length = 271 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 79/243 (32%), Gaps = 15/243 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLA------TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + G V A KI +L T AL + + + + Sbjct: 23 VCGFEAVKALAAEHPEKISRLFFAGSRARTFGALCKYLAQRKRLYRLVQSDAELEKLCGS 82 Query: 105 VGKEAV--HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 V + V A +++ D + + +N+GA++RSA F + I Sbjct: 83 VHHQGVVAMIEEPCIAAVTPERIKQWEAGKAAVLLCDRIGNANNLGAVIRSAAFFGIEHI 142 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT----IGLSSDSKK 218 + + + ++ A + + + + K S K Sbjct: 143 VISGEDAQAQLTPSAYRIAQGGMEFITLYTAPSAEHFLKACSGYLMRLGADHRAYRSLKD 202 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV---ALYI 275 ++ + ++LG E G+ + ++ + + G I++LNV+ A + AL Sbjct: 203 IPSLVRADEAVVVVLGNEEHGISAEAKKLCDVLVKISGSGAIESLNVAQAGTLFCSALAE 262 Query: 276 TQN 278 + Sbjct: 263 LRR 265 >gi|302873611|ref|YP_003842244.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B] gi|307688207|ref|ZP_07630653.1| RNA methyltransferase, TrmH family, group 2 [Clostridium cellulovorans 743B] gi|302576468|gb|ADL50480.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B] Length = 160 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 48/147 (32%), Gaps = 4/147 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I+R+ V + + R E +G Sbjct: 10 IVLYQPEIPQNTGNIVRTCVLTNSKLHLI--RPLGFEVTDKQLRRAGLDYWKDADISYYD 67 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254 + + ++ + K ++ ++ G E GL + + + ++ + Sbjct: 68 SFEELREKFKDRTFYYSTTKATKYYDEVDFKQGDFIVFGRESSGLPDEIRNSEPDNLIRI 127 Query: 255 HMPGII-KALNVSNAAAVALYITQNHF 280 M ++LN+SN ++ Y Sbjct: 128 PMVKTSLRSLNLSNTVSIVSYEATRQI 154 >gi|311234374|gb|ADP87228.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris RCH1] Length = 158 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 1/143 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VL H P N G + R A + + L ++ H+P + Sbjct: 1 MHIVLYHPEIPPNTGNVARLCAATRTRLHLIEPLGFSLDDRYLKRAGLDYWPHVPLTVWA 60 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + D L + + D L+ G E GL + + Sbjct: 61 SWEDFLSRGVEGRRLVTTSARGGTAVHRFTYAPD-DMLVFGPETTGLPQEVLDLTPHRVC 119 Query: 254 LHMPGIIKALNVSNAAAVALYIT 276 + + G ++++N+S A V LY Sbjct: 120 IPIWGEVRSINLSTATGVVLYQA 142 >gi|124514779|gb|EAY56291.1| putative TRNA/rRNA methyltransferase (SpoU) [Leptospirillum rubarum] Length = 192 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ + +++G E KG+ + + L M G + +LN+S A + LY Sbjct: 132 YRDPFPAPLVVVVGEEEKGVSRPVLQQSDWKVSLPMRGKVSSLNLSVALGIFLYA 186 >gi|88799598|ref|ZP_01115174.1| putative tRNA/rRNA methyltransferase [Reinekea sp. MED297] gi|88777683|gb|EAR08882.1| putative tRNA/rRNA methyltransferase [Reinekea sp. MED297] Length = 154 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R C + + L ++ H Sbjct: 1 MFHIVLFEPEIPPNTGNIIRLCANTGCQLHLIEPLGFSMDEKALRRAGLDY--HEFAQIR 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + LS+ + + L+ G E +GL +E+ Sbjct: 59 IWPDYPTFLQQAQPPRLFALSTKGSQGYSEVAFQPGDYLMFGPETRGLPADIRESLPPEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L M ++LN+SN AV +Y Sbjct: 119 VLRLPMLADSRSLNLSNTVAVMVYEAWRQ 147 >gi|224533032|ref|ZP_03673638.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi WI91-23] gi|224512026|gb|EEF82421.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi WI91-23] Length = 118 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 N+K+A+ G E GL + A + M G ++ N+S A A+ +Y K Sbjct: 26 NNKMAIFFGTELTGLSAEVLGAADLYVKIPMHGFTQSYNISVAVAIVMYSLLMRLRK 82 >gi|89357372|gb|ABD72531.1| prespore-specific protein-like [Physarum polycephalum] Length = 127 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + L++G E G+ P A + + G +++LNV AAAV Sbjct: 66 FLPTHPVVLLVGNERDGVSPALAAQADASIRIPSTGWVESLNVVQAAAVIFGELWRAR 123 >gi|283782445|ref|YP_003373200.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] gi|283440898|gb|ADB19340.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] Length = 177 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + K+AL++G E GL + + + G+ + NV+NA A+ALY Sbjct: 113 NMHEYQFPRKVALVIGNERHGLSDEELSLMNVCLEIPVWGLPHSYNVANATAMALYEYCR 172 Query: 279 H 279 Sbjct: 173 Q 173 >gi|269794006|ref|YP_003313461.1| rRNA methylase SpoU family [Sanguibacter keddieii DSM 10542] gi|269096191|gb|ACZ20627.1| predicted rRNA methylase SpoU family [Sanguibacter keddieii DSM 10542] Length = 157 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L+ G E GL + T + M ++LN++++A++ +Y Sbjct: 94 YRPSDLLVFGPEPTGLSDEVLAHPRITDQVKIPMLPSRRSLNLTSSASIVIYEAWRQL 151 >gi|229496035|ref|ZP_04389759.1| SpoU rRNA methylase family protein [Porphyromonas endodontalis ATCC 35406] gi|229317127|gb|EEN83036.1| SpoU rRNA methylase family protein [Porphyromonas endodontalis ATCC 35406] Length = 182 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +++AL++G E G+ + G +LNVS +A +A+Y Sbjct: 120 PERVALVVGNEVHGVADDVIACVDRCIEIPQYGTKHSLNVSVSAGIAIY 168 >gi|332877645|ref|ZP_08445388.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684394|gb|EGJ57248.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 181 Score = 72.9 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 69/156 (44%), Gaps = 3/156 (1%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + L+++LD+V +N+G++ R+ AF + I + + + K+A GA + Sbjct: 17 FKKAEKTPLIVILDNVRSLNNVGSVFRTCDAFLVEKIYLCGITATPPNKEIHKTALGATD 76 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRP 242 + + + ++++ + G I + K + + + + A+I G E KG+ Sbjct: 77 SVAWEYAEDTLQVVERLKAEGVCVISIEQAEKAVMLNDFQPKAHTQYAVIFGNEVKGVAQ 136 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + + + G +LNVS +A + ++ Sbjct: 137 EVVSLSDGVIEIPQYGTKHSLNVSVSAGIVIWEMTK 172 >gi|299143699|ref|ZP_07036779.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518184|gb|EFI41923.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 159 Score = 72.6 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 5/153 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +V P N GAI R+ + +S+ L ++ + Sbjct: 1 MLNIVFYEPEIPFNTGAIARTCGLTKTRLHLIEPLGFSVDSSHLKRAGLDYWHLVDINYY 60 Query: 193 SNLTDALQKMHSWGFQT---IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETA 248 + D L+K ++ +++ D ++ G E +G+ Sbjct: 61 KSYDDFLEKNEDEMKDGASLYFATTKAEQKYTDVKFKDGDYIMFGPETRGIPESILFNDI 120 Query: 249 TSMAHLHMPGII-KALNVSNAAAVALYITQNHF 280 + M ++LN+SN+A + L+ Sbjct: 121 EHCIKIPMLKDYGRSLNLSNSANIILFEALRQL 153 >gi|149194269|ref|ZP_01871366.1| tRNA/rRNA methyltransferase (SpoU) [Caminibacter mediatlanticus TB-2] gi|149135444|gb|EDM23923.1| tRNA/rRNA methyltransferase (SpoU) [Caminibacter mediatlanticus TB-2] Length = 153 Score = 72.6 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 3/151 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL + P N G I R V I + ++ + + Sbjct: 1 MFNIVLFNPQIPPNTGNIGRLCVNAGAKLHIVKPIGFDISQKAVKRAGLDYWDKLDLKVW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 ++ + L+ + + + + ++ I G+E KG+ K Sbjct: 61 ESVEEFLKNVDTNRCFFATTKTKTPYFEKK--YKKGDYFIFGSETKGIDEKILNQYKENN 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M ++LN++ + + LY K Sbjct: 119 ITIPMTNEGRSLNLAVSCGIILYEAIRQNFK 149 >gi|295099743|emb|CBK88832.1| Predicted rRNA methylase (SpoU class) [Eubacterium cylindroides T2-87] Length = 173 Score = 72.6 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 2/151 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R+ +A + + L +S ++ Sbjct: 1 MLHVVLYEPEIPQNTGNIIRTCMATGSRLHLIEPLGFSLDEKHLRRSGMDYIKDADIHIH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQE-TATS 250 N + +++ S + + K L+LG E G+ K + S Sbjct: 61 KNWEEFVKENPSDKYYFMTRYGHKAPSEFDFSDTSKDVYLVLGKESTGVDKKILKDHLDS 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 L M ++LN+SN AA+ +Y Sbjct: 121 CMRLPMVASARSLNLSNCAAIIVYEVLRQQN 151 >gi|167767431|ref|ZP_02439484.1| hypothetical protein CLOSS21_01950 [Clostridium sp. SS2/1] gi|317497260|ref|ZP_07955584.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA] gi|167710723|gb|EDS21302.1| hypothetical protein CLOSS21_01950 [Clostridium sp. SS2/1] gi|291558735|emb|CBL37535.1| Predicted rRNA methylase (SpoU class) [butyrate-producing bacterium SSC/2] gi|316895505|gb|EFV17663.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA] Length = 165 Score = 72.6 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I R+ VA + ++ ++ + + Sbjct: 1 MLHIVLHEPEMPANTGNIGRTCVACGAVLHLIEPLGFRLNEKMIKRAGLDYWDKLDVRTY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 N D L+K + + ++ + ++ G E G+ + + Sbjct: 61 INFEDFLEKNNDPKIYMATTKAKHVYSAPAYEDDEDVYIMFGKESAGIPEEILLNYEETS 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN+SN+ A+ Y H Sbjct: 121 IRIPMLPHIRSLNLSNSVAIVAYEVLRH 148 >gi|116791065|gb|ABK25846.1| unknown [Picea sitchensis] Length = 236 Score = 72.6 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 1/97 (1%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 L + +D + + A +LG EG GL Sbjct: 47 STLHLNFRHFYTLQQAHQYLKDKDSDICGVEIADGAIAVHEHPFKKSTAFLLGNEGTGLS 106 Query: 242 PKTQETATSMAHLHMPG-IIKALNVSNAAAVALYITQ 277 K E ++ G +LNV+ AA++ L+ Sbjct: 107 SKEMEICDYFVYISQYGCGTASLNVTVAASIVLHHFA 143 >gi|284054898|ref|ZP_06385108.1| RNA methyltransferase [Arthrospira platensis str. Paraca] gi|291566347|dbj|BAI88619.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis NIES-39] Length = 255 Score = 72.6 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + ALI G E +GL A + + ++LN++ A AV Y Sbjct: 101 HPRTTLPWLLQSPAALIFGPEDRGLSNTELNYAQRIVRIPSSSAYESLNLAQAVAVCCYE 160 Query: 276 T 276 Sbjct: 161 L 161 >gi|237744927|ref|ZP_04575408.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1] gi|229432156|gb|EEO42368.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1] Length = 150 Score = 72.6 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P+N G I RS V + + + + ++ + + Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTNTKLHLIKPLGFSLDEKQVKRAGMDYWHLVNLKVWESF 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254 + L+ + K ++ G E +G+ + + Sbjct: 63 EEFLEANKGIRLFYATTKTKQKYCD--VKYEKNDYIMFGPESRGIPEDILNKNPERCITI 120 Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280 M + ++LN+SN+A V LY Sbjct: 121 PMIPMGRSLNLSNSAVVILYEAYRQL 146 >gi|150865226|ref|XP_001384357.2| hypothetical protein PICST_31242 [Scheffersomyces stipitis CBS 6054] gi|149386482|gb|ABN66328.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 423 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 53/334 (15%), Positives = 110/334 (32%), Gaps = 68/334 (20%) Query: 8 KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67 + ++ + + R NH D ++ + ++ ++YG H+V +AL + R Sbjct: 85 REQRENARAERMAKSGRENHSDSEQYRVSRDRTPIGKNSLFEYVYGTHSVRSALESGKRS 144 Query: 68 IF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG------------- 113 + +L +L A + + + I+ VH G Sbjct: 145 SYSRLYVHNCQDRQLIKIAETKYGVKIVERSSKNDLNILCNNGVHNGVVLETKSLELNTI 204 Query: 114 -------------------------LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 + A + V L + LD + DP N+G Sbjct: 205 HSLGACQDNEYKVTVYNDLDDAEVEIVKTVARTDPVEDEPVAKMPLGIFLDGITDPQNMG 264 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF- 207 I+RSA F D I+ ++ V K++ GA++ I + + ++ + G+ Sbjct: 265 GIIRSAYYFGVDFIVVPGSHTARLGPVANKASVGAMDLIDIYETNESLKFIDRIRANGWS 324 Query: 208 -----------------QTIGLSSDSKKPLEQEIKNDKIAL-------ILGAEGKGLRPK 243 K ++ L ++G+EG+G+R Sbjct: 325 VVSTSAKPSVDEINDLKSKHEKVEQQLKNKYVDMNELPNILSQTPVLLVMGSEGEGIRTH 384 Query: 244 TQETATSMAHLH----MPGIIKALNVSNAAAVAL 273 + + + + I+ +LNVS A+ + + Sbjct: 385 MKLRSDFLVGIDKGRKQDHIVDSLNVSVASGILI 418 >gi|21222245|ref|NP_628024.1| rRNA methylase [Streptomyces coelicolor A3(2)] gi|5102788|emb|CAB45203.1| putative rRNA methylase [Streptomyces coelicolor A3(2)] Length = 261 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 37/240 (15%), Positives = 73/240 (30%), Gaps = 14/240 (5%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP------VKT 95 H + + L G H + AL + + T + L L + Sbjct: 19 HRNAGRCVLLDGFHALKHALRFGAEVP--VAVTSDRAGALALADELAPDVREVLAGLLTE 76 Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 V + +V + AL P + L+A+ + + ++ P N+G Sbjct: 77 VSREAYASLVARPHPTAVAALAVRPSRAAGLEALARTPRRAPVVVLDQPRNLGNAGAVIR 136 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 + G + GA H + ++ + Sbjct: 137 LAAGFGATGVVTTGTLDPWHPTVVRGGAGLHFATVVER------LEVAGLPPGPLFALDP 190 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + D L G+E GL P+ + A + L M + + N++ + A+ LY Sbjct: 191 EGEDIRGLELPDDALLAFGSERSGLTPELRARADRLVALPMRPQVSSYNLATSVAMTLYH 250 >gi|307183316|gb|EFN70185.1| Probable methyltransferase TARBP1 [Camponotus floridanus] Length = 325 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 60/191 (31%), Gaps = 7/191 (3%) Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + +D ++ + + L++V +N P N+G I R+ F Sbjct: 134 KKMDPSKSTIPLYSDIFESMKESMYQQDLQSHKEGLIVVASFINRPPNLGGIARTCEIFG 193 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 ++ + S S + ++ + + Sbjct: 194 VKALVIANLDYIKDKEFQCLSVSAERWINILQVKPHELQKYLFEKKNAGWSLIGAEQTAN 253 Query: 219 PLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-- 274 + Q K L+LG E G+ + + G+I++LNV AA+ ++ Sbjct: 254 SINLLQTKFEKKTILVLGNEKDGIPANFIPLFDTCVEIPQVGVIRSLNVHVTAAICIWQY 313 Query: 275 ---ITQNHFAK 282 T F++ Sbjct: 314 ASQHTLRQFSQ 324 >gi|282892401|ref|ZP_06300751.1| hypothetical protein pah_c253o020 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497803|gb|EFB40164.1| hypothetical protein pah_c253o020 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 150 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 1/73 (1%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKALNVS 266 SS + + K LI GAE GL + M ++ LN++ Sbjct: 72 NFYFFSSHATQNYTDVSYQPKDLLIFGAETHGLPESITNKWPNRCVKIPMVSGVRCLNLA 131 Query: 267 NAAAVALYITQNH 279 + + +Y Sbjct: 132 TSVGIGVYEAWRQ 144 >gi|257876758|ref|ZP_05656411.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20] gi|257810924|gb|EEV39744.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20] Length = 167 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I R+ A + + ++ L ++ + Sbjct: 1 MNHIVLFEPQIPANTGNIARTCAATNTHLHLIEPLGFSTDDKQLKRAGLDYWHDVNITYH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251 +L + + + I ++ +D I G E GL +E A Sbjct: 61 KDLAAFMDFLGARPLYLISKFANRVYSDVDYTADDDQFFIFGKETTGLPESFMREHAEKC 120 Query: 252 AHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 121 LRIPMNDEHVRSLNLSNTAALIIYEVLRQ 149 >gi|89894053|ref|YP_517540.1| hypothetical protein DSY1307 [Desulfitobacterium hafniense Y51] gi|89333501|dbj|BAE83096.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 155 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 3/150 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + L +VL P N G + R A + L ++ + + Sbjct: 1 MAHLNIVLVEPEIPPNTGNVARLCAATGAALHLVKPLGFEISDKHLKRAGLDYWDMLDIH 60 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TAT 249 N + K + ++ G E KGL P+ Sbjct: 61 IYENYAEFEAKNPQGPRYLATTKAQRLHTD--IHYQQGGYILFGKETKGLSPEILARYPE 118 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L M ++LN+SN+ AV +Y Sbjct: 119 TTLRLPMRADARSLNLSNSVAVVVYEALRQ 148 >gi|58583829|ref|YP_202845.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625632|ref|YP_453004.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188574839|ref|YP_001911768.1| hypothetical tRNA/rRNA methyltransferase YibK [Xanthomonas oryzae pv. oryzae PXO99A] gi|58428423|gb|AAW77460.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369572|dbj|BAE70730.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519291|gb|ACD57236.1| hypothetical tRNA/rRNA methyltransferase YibK [Xanthomonas oryzae pv. oryzae PXO99A] Length = 158 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + D A + G E +GL + E+ L M ++LN+SN AV ++ Sbjct: 90 YDTPQFADGDAFLFGPETRGLPTEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAW 149 Query: 278 NHFA 281 + Sbjct: 150 RQWN 153 >gi|219668434|ref|YP_002458869.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense DCB-2] gi|219538694|gb|ACL20433.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense DCB-2] Length = 155 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 3/150 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + L +VL P N G + R A + L ++ + + Sbjct: 1 MAHLNIVLVEPEIPPNTGNVARLCAATGAALHLVKPLGFEISDKHLKRAGLDYWDMLDIH 60 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TAT 249 N + K + ++ G E KGL P+ Sbjct: 61 IYENYAEFEAKNPQGPRYLATTKAQRLHTD--IHYQQGGYILFGKETKGLSPEILARYPE 118 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L M ++LN+SN+ AV +Y Sbjct: 119 TTLRLPMRADARSLNLSNSVAVVVYEALRQ 148 >gi|114776575|ref|ZP_01451620.1| RNA methyltransferase, TrmH family, group 2, putative [Mariprofundus ferrooxydans PV-1] gi|114553405|gb|EAU55803.1| RNA methyltransferase, TrmH family, group 2, putative [Mariprofundus ferrooxydans PV-1] Length = 155 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 41/150 (27%), Gaps = 4/150 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P N G I R + + L ++ +++ Sbjct: 5 LHIVLVEPEIPPNTGNIARLCGCTGAALHLVHPLGFSVDDRSLKRAGLDYWQYLDVTHHD 64 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + S + + L+ G E +GL Sbjct: 65 SWQQLRSSLDGNRNWYGMS-SKASTSFWDVTYSHGDVLVFGPETRGLSAAILAEI-QPLT 122 Query: 254 LHMPGI--IKALNVSNAAAVALYITQNHFA 281 + M +++LN++ + L+ Sbjct: 123 VPMRADAPVRSLNLATVCGITLFEALRQLK 152 >gi|257867865|ref|ZP_05647518.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30] gi|257874194|ref|ZP_05653847.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10] gi|257801948|gb|EEV30851.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30] gi|257808358|gb|EEV37180.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10] Length = 167 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I R+ A + + ++ L ++ + Sbjct: 1 MNHIVLFEPQIPANTGNIARTCAATNTHLHLIEPLGFSTDDKQLKRAGLDYWHDVNITYH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251 +L + + + I ++ +D I G E GL +E A Sbjct: 61 KDLAAFMDFLGARPLYLISKFANRVYSDVDYTADDDQFFIFGKETTGLPESFMREHAEKC 120 Query: 252 AHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 121 LRIPMNDEHVRSLNLSNTAALIIYEVLRQ 149 >gi|213962171|ref|ZP_03390435.1| SpoU rRNA methylase family protein [Capnocytophaga sputigena Capno] gi|213955177|gb|EEB66495.1| SpoU rRNA methylase family protein [Capnocytophaga sputigena Capno] Length = 180 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 67/155 (43%), Gaps = 3/155 (1%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + L+++LD+V +NIG++ R+ AF + I + + + K+A GA + Sbjct: 17 FKKAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTALGATD 76 Query: 186 HIPYIRISNL---TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 + + + N + L++ + + + Q K A+I G E KG+ Sbjct: 77 SVAWEYVENTLSVVEKLKEQGVYIISIEQAENSTMLNDFQSNGKQKYAIIFGNEVKGVEQ 136 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + + G +LN+S +A +A++ Sbjct: 137 EVVSASDEVIEIPQYGTKHSLNISVSAGIAIWELA 171 >gi|282890164|ref|ZP_06298694.1| hypothetical protein pah_c014o012 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499821|gb|EFB42110.1| hypothetical protein pah_c014o012 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 253 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 62/172 (36%), Gaps = 6/172 (3%) Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 ++ + L + + + LD + N+G+I+R+ AFS + + Sbjct: 78 MSLKEWNLLPVITHQDRDVVLEEPGSIAIYLDSIRSAFNVGSIIRTVEAFSLGSLYFSPE 137 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 E + + K+A G E + +S + + + Sbjct: 138 TPCVEHSQVQKTAMGTSE------WVTCFKDIPLTDLPKPIIALETSPCAISIYDFVFPE 191 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +L+LG E G T + A + + + G +LNV+NA A+A + Sbjct: 192 VFSLVLGNEEYGCSEATLKQADFLLQIPLCGRKNSLNVANAFAIAAGEIRRQ 243 >gi|118088202|ref|XP_419559.2| PREDICTED: similar to TAR RNA loop binding protein [Gallus gallus] Length = 1328 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K L+LG E +G+ + GII++LNV + A+ ++ Sbjct: 1263 YCFPEKSLLLLGNEHEGIPANLIHHLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1319 >gi|319948750|ref|ZP_08022870.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] gi|319437583|gb|EFV92583.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] Length = 163 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q L+ G E GL T+ + M +++N+SNAAAVA+Y Sbjct: 92 QVRFAPGDVLLFGPEPTGLAEDVLADPRVTARVRIPMLPGRRSMNLSNAAAVAVYEAWRQ 151 >gi|297190579|ref|ZP_06907977.1| rRNA methylase SpoU [Streptomyces pristinaespiralis ATCC 25486] gi|197717892|gb|EDY61800.1| rRNA methylase SpoU [Streptomyces pristinaespiralis ATCC 25486] Length = 190 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++LG E G+ P+ + + M G +LNV+ A ++ALY Sbjct: 138 PTVMVLGHEQHGIPPEALDLLDECVEIPMVGTGSSLNVAVAGSLALY 184 >gi|148642454|ref|YP_001272967.1| rRNA methylase [Methanobrevibacter smithii ATCC 35061] gi|148551471|gb|ABQ86599.1| rRNA methylase, SpoU family [Methanobrevibacter smithii ATCC 35061] Length = 301 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 N+K A++ G EG GL + E + LN+S+AAA+ Y + Sbjct: 172 NNKTAILFGREGNGLTNEEIEDCDICVSIPTDPTYPILNISHAAAIIFYELFKN 225 >gi|319650275|ref|ZP_08004420.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2] gi|317398026|gb|EFV78719.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2] Length = 155 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 2/148 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 + +VL P N G I R+ A + ++ +L ++ + + + Sbjct: 1 MHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWQFVKIVYHE 60 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQETATSM- 251 +L D + + K I G E GL E Sbjct: 61 SLDDFFNSSEGGEYFYLTKYGTKPHSTFDYSNVGKDYYFIFGKETTGLPKNIIEINKERA 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 121 LRVPMNDKVRSLNLSNTAAILVYEALRQ 148 >gi|227832337|ref|YP_002834044.1| putative rRNA methylase, SpoU class [Corynebacterium aurimucosum ATCC 700975] gi|227453353|gb|ACP32106.1| putative rRNA methylase, SpoU class [Corynebacterium aurimucosum ATCC 700975] Length = 158 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 4/154 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + S L +V D+ P N G +R+A + E L ++ H Sbjct: 1 MPMSSLHIVFDNPVIPTNTGNAIRTAAVTGASLHLIEPLGFNFEDKHLKRAGLDY--HDL 58 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK--TQE 246 + + ++ ++K + L+ G E GL + Sbjct: 59 ADLKIHKDFDACMEALPDARVFAFTTHTEKWFTDVEYQEGDVLLFGTEPTGLPEEHAFHP 118 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T + M +++N+SNAA+ A+Y Sbjct: 119 RVTERVRIPMMPARRSMNLSNAASTAVYEAWRQL 152 >gi|225552193|ref|ZP_03773133.1| tRNA/rRNA methyltransferase [Borrelia sp. SV1] gi|225371191|gb|EEH00621.1| tRNA/rRNA methyltransferase [Borrelia sp. SV1] Length = 218 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 N+K+A+ G E GL + A + M G ++ N+S A A+ +Y K Sbjct: 126 NNKMAIFFGTELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLIRLRK 182 >gi|188582880|ref|YP_001926325.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001] gi|179346378|gb|ACB81790.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001] Length = 269 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 79/235 (33%), Gaps = 4/235 (1%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + + G T+ + +R + + D PV + + Sbjct: 29 RQGRFIVEGEVTLRLLFSPGARFAAESVLLAPERWPGFSDLLRGDGPPVYLAGKDVMSAV 88 Query: 105 VG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161 G V P+ + L++ + + + N+G + R+A AF D Sbjct: 89 AGFPIHRGVLAVGLRGAEPVPEALVPPAPAPALVVGMVGLTNHDNVGGLFRNAAAFGADA 148 Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221 + + ++GA +P+ R ++ L + L+ + L+ Sbjct: 149 VWLDAETCDPLYRKAIRVSAGAALTVPFARAASGAALLDLAQRHDLTPLALTPGGHETLD 208 Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + L+LG EG GL A + M +LNV+ A A+AL+ Sbjct: 209 RLAPPSRALLLLGTEGPGLPEALMARA-RRLRIAMAPGFDSLNVATAGAIALHHL 262 >gi|42523228|ref|NP_968608.1| putative tRNA/rRNA methyltransferase [Bdellovibrio bacteriovorus HD100] gi|39575433|emb|CAE79601.1| putative tRNA/rRNA methyltransferase [Bdellovibrio bacteriovorus HD100] Length = 258 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L+ VLD++ N+G+I R+A + I + K+A G E++ + Sbjct: 107 PLVFVLDNIRSAFNVGSIFRTAECLGAEKIYLCGYTPLPTQWKVEKTAMGTQEYLAWEEA 166 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSM 251 L + L+++ G++ + L + + E ++ A +LG E GL P+ + + Sbjct: 167 PKLLECLEELKDEGYRIVALETAASASDLFEKFESEPTAFVLGNERFGLDPEVLKIIDEV 226 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + + G +LNV AAVA + Sbjct: 227 RIIPLRGRKNSLNVGVTAAVAGFEWMRQ 254 >gi|315302368|ref|ZP_07873242.1| RNA methyltransferase, TrmH family, group 2 [Listeria ivanovii FSL F6-596] gi|313629255|gb|EFR97514.1| RNA methyltransferase, TrmH family, group 2 [Listeria ivanovii FSL F6-596] Length = 169 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + ++ +L ++ +++ Sbjct: 1 MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLTY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT 249 ++ + +K F I ++ + I G E GL E Sbjct: 61 YDSIDEFFEKNQGGEFYFITKFGRHVYSDIDYSDTSKNYFFIFGKETTGLPDALLQENEE 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M I++LN+SN AAV Y Sbjct: 121 NCLRIPMTDHIRSLNLSNTAAVLAYEALRQQN 152 >gi|150026034|ref|YP_001296860.1| rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149772575|emb|CAL44058.1| Probable rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 151 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 1/149 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P+N G I R V + L +S H+ + + Sbjct: 1 MLNIVLVEPEIPNNTGNIGRLCVGTGNRLHLIHPFGFEINDKNLKRSGLDYWVHLDWFQY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 N + + ++ + S ++ + + L+ G E GL + + Sbjct: 61 KNTQEWIDQIPDKSRVFMMS-SHAQTSYYEANFQEGDWLVFGKESVGLSKEILNLFENHL 119 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M I++ N++N+ A + + A Sbjct: 120 TIPMSDKIRSYNIANSVAFVVGEARRQIA 148 >gi|224047842|ref|XP_002191709.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Taeniopygia guttata] Length = 1325 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K L+LG E +G+ + GII++LNV + A+ ++ Sbjct: 1261 YCFPEKSLLLLGNEHEGIPANLIHHLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1317 >gi|298207614|ref|YP_003715793.1| putative SpoU rRNA methylase family protein [Croceibacter atlanticus HTCC2559] gi|83850250|gb|EAP88118.1| putative SpoU rRNA methylase family protein [Croceibacter atlanticus HTCC2559] Length = 178 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 68/160 (42%), Gaps = 3/160 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + L+++LD+V HN+G++ R+A AF + I + + K+A GA Sbjct: 18 EFKDATKTPLIIILDNVRSFHNVGSVFRTADAFLIEKIYLCGITAQPPHKDIRKTALGAT 77 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLR 241 E + + +++ ++++ + + + + K + A++ G E KG++ Sbjct: 78 ETVVWEYVNDTVALVERLKEDHVKILAIEQAEDAIMLNTFKPEPNTTYAVVFGNEVKGVQ 137 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + ++ + G +LN+S + V ++ Sbjct: 138 QDVVSQSDAVIEIPQFGSKHSLNISVSVGVVMWDLAMKIN 177 >gi|307823279|ref|ZP_07653509.1| RNA methyltransferase, TrmH family, group 2 [Methylobacter tundripaludum SV96] gi|307736054|gb|EFO06901.1| RNA methyltransferase, TrmH family, group 2 [Methylobacter tundripaludum SV96] Length = 158 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R + + L ++ H Sbjct: 1 MFHIVLYEPEIPANTGNIIRLCANTGMQLHLIKPLGFELDDKKLRRAGLDY--HEWVAVK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + A + L++ + + + A + G E +GL + Sbjct: 59 EHDSLADFVDSIKPGRIFALTTKGTQIYSEVSFQPEDAFLFGPETRGLPATVLADLGSER 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 +L M ++LN+SN ++ LY Sbjct: 119 CLYLPMQAESRSLNLSNTVSIVLYEAWRQ 147 >gi|213861517|ref|ZP_03385987.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 82 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 24/55 (43%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+ L+LG E L +E ++ G +++LNVS A V L Sbjct: 25 LPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAEWWRQ 79 >gi|213583507|ref|ZP_03365333.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 119 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 24/55 (43%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+ L+LG E L +E ++ G +++LNVS A V L Sbjct: 62 LPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAEWWRQ 116 >gi|261349415|ref|ZP_05974832.1| RNA methyltransferase, TrmH family, group 1 [Methanobrevibacter smithii DSM 2374] gi|288861777|gb|EFC94075.1| RNA methyltransferase, TrmH family, group 1 [Methanobrevibacter smithii DSM 2374] Length = 301 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 N+K A++ G EG GL + E + LN+S+AAA+ Y + Sbjct: 172 NNKTAILFGREGNGLTNEEIEDCDICVSIPTDPTYPILNISHAAAIIFYELFKN 225 >gi|323358259|ref|YP_004224655.1| rRNA methylase [Microbacterium testaceum StLB037] gi|323274630|dbj|BAJ74775.1| rRNA methylase [Microbacterium testaceum StLB037] Length = 227 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + L+ G EG GL P+ A+++ + G +++N ++AAAV +Y +A Sbjct: 171 LPEACVLLFGQEGPGLSPEALAAASAVVEITQYGSTRSINAASAAAVVMYEWCRRWA 227 >gi|118466307|ref|YP_883469.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium avium 104] gi|254776762|ref|ZP_05218278.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium avium subsp. avium ATCC 25291] gi|118167594|gb|ABK68491.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium avium 104] Length = 154 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E GL T T+ + M ++LN+SNAAA+A+Y Sbjct: 91 YRPGDVLMFGPEPTGLDAATLADPHVTTQVRIPMLAGRRSLNLSNAAAIAVYEAWRQ 147 >gi|41409572|ref|NP_962408.1| hypothetical protein MAP3474 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398403|gb|AAS06024.1| SpoU [Mycobacterium avium subsp. paratuberculosis K-10] Length = 154 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E GL T T+ + M ++LN+SNAAA+A+Y Sbjct: 91 YRPGDVLMFGPEPTGLDAATLADPHVTTQVRIPMLAGRRSLNLSNAAAIAVYEAWRQ 147 >gi|323457320|gb|EGB13186.1| hypothetical protein AURANDRAFT_6212 [Aureococcus anophagefferens] Length = 147 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 52/146 (35%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L ++LD + N+G ++R+ + +P AVL + + A S Sbjct: 2 LTVILDGLRSGENVGNVIRTCETAGARVLCCGTTPAPPTPAVLKAACNAAPFVDVRREPS 61 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 L ++ PL +AL+ G E G+ P + Sbjct: 62 TLDAVRALQGRGVAVYALETTRGSVPLYDADLPAPLALVFGNELVGVHPDVLAACDGVVS 121 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 L G+ +LNV++ AA A+Y Sbjct: 122 LPTFGVKNSLNVASCAAAAVYEVVRR 147 >gi|325847687|ref|ZP_08170010.1| RNA methyltransferase, TrmH family [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480899|gb|EGC83951.1| RNA methyltransferase, TrmH family [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 243 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 85/226 (37%), Gaps = 17/226 (7%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + + + V + N + + F DK+ Sbjct: 28 SFIVESIKIV----DQIPEDFECEFVFVNEDMK-----DYKTDFKKIVFSNNLFDKLS-L 77 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 +G++ + + + +++LDH+ DP N+G I+RSA AFS II Sbjct: 78 LENPEGVSAVIKMKDKKEISSKK----VLLLDHMQDPGNLGTIIRSAEAFSFKDIIFLNN 133 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + +++ G++ + +I + + + L+ K ++ D Sbjct: 134 CVDLYNEKTIRASMGSIFRLNFIDLELEDVKDLINKDYK---LILADMDGKSVDYFKSCD 190 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 KI L +G E G+ ++ + + M G I++LN + AA++ + Sbjct: 191 KIILAIGNEANGISKSLKDLSDDFVSIKMDGEIESLNAAIAASILM 236 >gi|119713616|gb|ABL97667.1| RNA methyltransferase [uncultured marine bacterium EB0_39H12] Length = 249 Score = 72.2 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+AL+ G E +GL + H+ +LN++ A + +Y + Sbjct: 116 QQKVALVFGREDRGLTNEELGLCNFHVHIPTDPDYSSLNLAQAVQILVYEIR 167 >gi|313237882|emb|CBY13012.1| unnamed protein product [Oikopleura dioica] Length = 643 Score = 72.2 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 77/219 (35%), Gaps = 7/219 (3%) Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 N + F+ L+ + + R + + +D + E + T + Sbjct: 427 KNATSSCFKFLSFETEIDRFYKLKTSKEDDKIS----RDLDDLSLDEPTNVQ-QKITPWI 481 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKS 179 +D L++ ++ +N+G I R+A F + I + LA + Sbjct: 482 QDSVIDKKSCEGLVICASLIDKANNLGGITRTAEVFGAESLAISNLSILKSKDYTSLAVT 541 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 A ++ I+ L + + +E+ K ++LG E +G Sbjct: 542 AMKWIDIQEVKAINLQKWLLSMKMKGYCLAGLEQTTNSISIEKFDFPKKCVVVLGNEREG 601 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + + GII++LNV +AA++++ Sbjct: 602 IPTNIISLLDVVLEIPQKGIIRSLNVHVSAAISIWEYTR 640 >gi|222149356|ref|YP_002550313.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4] gi|221736340|gb|ACM37303.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4] Length = 161 Score = 72.2 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 54/158 (34%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 ++ ++ S L + L + P N G ILR A I L ++ Sbjct: 1 MTNSITGTSPSTLRIALYQPDIPGNTGTILRLAACLGLGVDIIEPAGFDLSDRNLKRAGM 60 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 L + R N + G + + S+ + P + L+ G E G+ Sbjct: 61 DYLAAVTLTRHVNWAQFEDWRKNSGRRLVLASTKAAMPYTELAFQPDDILLFGRESAGVP 120 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + A + + M +++NV+ +AA+ Sbjct: 121 DHVHDGADARILIPMVEGQRSINVAMSAAMIAGEALRQ 158 >gi|296121726|ref|YP_003629504.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM 3776] gi|296014066|gb|ADG67305.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM 3776] Length = 156 Score = 72.2 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 59/148 (39%), Gaps = 3/148 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL + P N G I R+ VA + ++ L ++ + Y+ + Sbjct: 6 LHVVLYQPDIPQNTGNIGRTCVAVGARLWLIRPLGFVLDARHLKRAGMDYWPMLDYVVVD 65 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-SMA 252 +L D +++ F + + + + + L+ G+E +GL P E M Sbjct: 66 SLNDVREQLPGHDFWYVENPA--PRRIWEAEFKPGSVLVFGSESRGLPPAVIEECRGQMI 123 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 L M +++LN+++ A+Y Sbjct: 124 DLPMRPEVRSLNLASTVNTAVYEAIRQI 151 >gi|325120191|emb|CBZ55745.1| putative RNA methyltransferase, TrmH family domain-containing protein [Neospora caninum Liverpool] Length = 2918 Score = 72.2 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 LE K AL+LGAE +GL + + G+I++LNV AA+ ++ Sbjct: 2853 MLENATFERKTALVLGAEKEGLPAALLALMDACIEIPQLGLIRSLNVHVTAAMVVWEYTK 2912 Query: 279 H 279 Sbjct: 2913 Q 2913 >gi|289759523|ref|ZP_06518901.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T85] gi|289715087|gb|EFD79099.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T85] Length = 172 Score = 72.2 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 4/154 (2%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 ++ N G +R+ A C+ + L ++ H Sbjct: 14 CHDRRMFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDY--HD 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE- 246 + + A + ++ + + L+ G E GL T Sbjct: 72 LASVTVHASLAHAWEALSPARVFAFTAQATTLFTNVGYHAGDVLMFGPEPTGLDEATLAD 131 Query: 247 -TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 T + M ++LN+SNAAAVA+Y Sbjct: 132 THITGQVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 165 >gi|33591801|ref|NP_879445.1| rRNA methylase [Bordetella pertussis Tohama I] gi|33571444|emb|CAE44927.1| rRNA methylase [Bordetella pertussis Tohama I] gi|332381218|gb|AEE66065.1| rRNA methylase [Bordetella pertussis CS] Length = 156 Score = 72.2 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 46/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G +R + + A L ++ E P Sbjct: 1 MFHVVLVSPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDARLRRAGLDYHEWQPVQVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 L AL + + L++ ++ L + G E GL Sbjct: 61 DTLPQALAATGAAAPRIFALTTRARTSLADMAFQAGDVFVFGRETAGLSEAHMALFGPAQ 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 121 QLRLPMRPGQRSLNLSNAVAVTVFEAWRQ 149 >gi|297584847|ref|YP_003700627.1| TrmH family RNA methyltransferase [Bacillus selenitireducens MLS10] gi|297143304|gb|ADI00062.1| RNA methyltransferase, TrmH family, group 2 [Bacillus selenitireducens MLS10] Length = 163 Score = 72.2 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R+ + ++ +L ++ + Sbjct: 1 MSIHVVLYEPEIPANTGNIARTCAGTHSHLHLIHPLGFSTDDRMLKRAGCDYWPSVKVEH 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLR-PKTQETAT 249 + + F I + D+ + G E GL T Sbjct: 61 HDSFDALYSRYPEGAFYFIETIGEKNVYDFDYSDPDQDYFFVFGKETTGLPGELTARFEE 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + ++++LN+SN AA+ +Y Sbjct: 121 HCFRIPQTDLVRSLNLSNTAAIVVYEALRQ 150 >gi|2222703|emb|CAB09926.1| rRNA methylase [Mycobacterium leprae] Length = 169 Score = 72.2 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQ--ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E GL T + T + M ++LN+SNAAAVA+Y Sbjct: 106 YQAGDVLMFGPEPTGLDAATLADDHITQQVRIPMLSGRRSLNLSNAAAVAVYEAWRQ 162 >gi|15827131|ref|NP_301394.1| tRNA/rRNA methyltransferase [Mycobacterium leprae TN] gi|221229609|ref|YP_002503025.1| putative tRNA/rRNA methyltransferase [Mycobacterium leprae Br4923] gi|13092679|emb|CAC29927.1| putative tRNA/rRNA methyltransferase [Mycobacterium leprae] gi|219932716|emb|CAR70512.1| putative tRNA/rRNA methyltransferase [Mycobacterium leprae Br4923] Length = 158 Score = 72.2 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQ--ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E GL T + T + M ++LN+SNAAAVA+Y Sbjct: 95 YQAGDVLMFGPEPTGLDAATLADDHITQQVRIPMLSGRRSLNLSNAAAVAVYEAWRQ 151 >gi|297491399|ref|XP_002698855.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Bos taurus] gi|296472224|gb|DAA14339.1| TAR (HIV-1) RNA binding protein 1 [Bos taurus] Length = 890 Score = 72.2 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K L+LG E +G+ + + GII++LNV + A+ ++ Sbjct: 824 YCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 880 >gi|320108950|ref|YP_004184540.1| tRNA/rRNA methyltransferase SpoU [Terriglobus saanensis SP1PR4] gi|319927471|gb|ADV84546.1| tRNA/rRNA methyltransferase (SpoU) [Terriglobus saanensis SP1PR4] Length = 240 Score = 72.2 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 25/52 (48%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 DKIA++ G+E GL + + + M ++N+ AAAV LY Sbjct: 109 DKIAILFGSEKTGLSNEALSHCQRLLTIPMSATNVSMNLGQAAAVILYELVR 160 >gi|283954465|ref|ZP_06371985.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 414] gi|283794082|gb|EFC32831.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 414] Length = 155 Score = 72.2 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G+I R I + ++ + + I Sbjct: 1 MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPSVFDISQKAVRRAGLDYWDKLEPIIW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 NL + L + + ++ S+KP L G+E GL + + Sbjct: 61 ENLEEFLNENIIHKNRFFFATTKSQKPYFDVEFQKNDFLFFGSESYGLSMELMQLNWQNA 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ + + Y Sbjct: 121 ITIPMKSYGRSLNLATSVGIISYEALRQ 148 >gi|222446047|ref|ZP_03608562.1| hypothetical protein METSMIALI_01696 [Methanobrevibacter smithii DSM 2375] gi|222435612|gb|EEE42777.1| hypothetical protein METSMIALI_01696 [Methanobrevibacter smithii DSM 2375] Length = 272 Score = 72.2 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 N+K A++ G EG GL + E + LN+S+AAA+ Y + Sbjct: 143 NNKTAILFGREGNGLTNEEIEDCDICVSIPTDPTYPILNISHAAAIIFYELFKN 196 >gi|169351445|ref|ZP_02868383.1| hypothetical protein CLOSPI_02225 [Clostridium spiroforme DSM 1552] gi|169291667|gb|EDS73800.1| hypothetical protein CLOSPI_02225 [Clostridium spiroforme DSM 1552] Length = 246 Score = 72.2 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 76/229 (33%), Gaps = 14/229 (6%) Query: 58 SAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 L N + ++ KN + D + + + + Sbjct: 22 IELLKNKPDLVLRVYIKSNSYKNKGIGIIDDLCKRNKIDLIESDN------TINKLSKKD 75 Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 A + +++ + +++V + D N+G I+R+ + F + + + Sbjct: 76 NCFAIAIIKKYSMELKNTNHVVLV--NPGDMGNMGTIIRTMLGFGYNDLAIIRPGVDVFD 133 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + +++ GA+ +I + D L K + + L L + + +L+ Sbjct: 134 PKVVRASMGAIFNINFEYFDTFDDYLHKYPNRDIYPLMLKGAKNIHLIEPD-DKNYSLVF 192 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G E GL + + I +LN+S A + LY K Sbjct: 193 GNESSGLPDEFLNYG-QSIFIPHSDKIDSLNLSMALGITLYHFSKDIFK 240 >gi|67605967|ref|XP_666721.1| hypothetical protein [Cryptosporidium hominis TU502] gi|54657764|gb|EAL36488.1| hypothetical protein Chro.10198 [Cryptosporidium hominis] Length = 740 Score = 72.2 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 29/216 (13%), Positives = 67/216 (31%), Gaps = 5/216 (2%) Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 K + + P+ ++ + + + L Sbjct: 521 KKIICKEMSGYYVQEKEEKEEPNAIEIQRSHNYQLKFEPPHYDSLISGEPRSRRSDNQLL 580 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE- 185 + L+++ V+ NI I R+ F + ++ + + ++ S + Sbjct: 581 NRSG---LIVIGSLVDKVPNIAGITRTCEVFRANELLLSSKKVMNDPIFRQISVTAEKWL 637 Query: 186 -HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +K + S +++ +K LILG E +G+ + Sbjct: 638 PINELEPTKIKEYVQKKRMEGYKIFGLEQTSSSISIKECAFPEKSVLILGKEKEGIPSEI 697 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + GII++LNV +A++ +Y F Sbjct: 698 VSIVDQCIEIPQYGIIRSLNVHVSASIFIYEYTTQF 733 >gi|71906256|ref|YP_283843.1| RNA methyltransferase TrmH, group 2 [Dechloromonas aromatica RCB] gi|71845877|gb|AAZ45373.1| RNA methyltransferase TrmH, group 2 [Dechloromonas aromatica RCB] Length = 154 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R + + L ++ E+ +R Sbjct: 1 MFAVVLYRPEIPPNTGNIIRMCANTGAELHLVEPLGFDLSDKHLRRAGLDYHEYARIVRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250 ++ + + + + G E GL P+ + + Sbjct: 61 ADWAACKAALAGRRLFAMTTKGTASPFS--TALEANDVFVFGCETSGLPPEIRAEFSPER 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNAAAV ++ Sbjct: 119 CLRLPMLPGQRSLNLSNAAAVTVFEAWRQ 147 >gi|332637245|ref|ZP_08416108.1| tRNA/rRNA methyltransferase (SpoU) [Weissella cibaria KACC 11862] Length = 204 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 2/98 (2%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 + H L D + + + +K + G E GL Sbjct: 98 EHISHHKITDYQKLFDQWHAEGYTIYAVDNTPGYELHNVFETALPEKSVFLFGEEQIGLA 157 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVA--LYITQ 277 + + A +M ++ G +++LNVS A + LY Q Sbjct: 158 DELIQAADAMIYIPQTGSVRSLNVSVAHGIIAALYTAQ 195 >gi|148271834|ref|YP_001221395.1| putative RNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829764|emb|CAN00682.1| putative RNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 219 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 5/174 (2%) Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 V + LD R + +++ NIG+I+RSA AF+ D + Sbjct: 46 DTRNVIDRYRYWRMDAIVADLDQHR-HPFHVAIENWQHDMNIGSIVRSANAFAADTVHIV 104 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 R ++ + + H I + + + S + Sbjct: 105 GRRRWNKRGAMVTDRYQHVVHHATIDDLVEWARGEGLPIIAIDNVDGSVLLET----TRL 160 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ L+ G EG GL + A + G +++N S AAAV ++ Sbjct: 161 PERCVLVFGQEGPGLSDEAVAAADMTVAISQFGSTRSINASAAAAVVMHAWVMQ 214 >gi|123969030|ref|YP_001009888.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. AS9601] gi|123199140|gb|ABM70781.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. AS9601] Length = 236 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 17/232 (7%) Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + ++L T+ L + + + V + + + G+A Sbjct: 2 LKSGKNP-SKILVTEKWLRKNQNLSKKFDESLINIVSEEVLASAISTI-NPDGIAALVEI 59 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP---------- 170 P R ++VLD + DP N+G + R+A+A + I P Sbjct: 60 SAIPNYQFNRKDDFVLVLDRIQDPGNMGNLFRTALAAGVNAIFLAGGAHPLGQKVLRASS 119 Query: 171 ---SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 L + + + + KP + + Sbjct: 120 GAVFHLPFLRFDGIEEEILNSLLNSLSELSNVGFKIFSTSSHNESTKKPSKPYWEVDWSR 179 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS-NAAAVALYITQN 278 + ALILG EGKG+ K QE + I+++LNV+ A + L + Sbjct: 180 RTALILGNEGKGIHKKIQEAFNETITIPHSEIVESLNVACVAVPLLL-ERKR 230 >gi|56461530|ref|YP_156811.1| rRNA/tRNA methylase [Idiomarina loihiensis L2TR] gi|56180540|gb|AAV83262.1| Predicted rRNA/tRNA methylase, SpoU family [Idiomarina loihiensis L2TR] Length = 154 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G ++R A + + + ++ H Sbjct: 1 MLHLVLFEPEIPPNTGNVIRLAANTGMSLHLIEPLGFELDEKKVRRAGLDY--HDLASVN 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-- 250 + + + ++ K L+ G E +GL + ET Sbjct: 59 IHKDWQSFLNSTSFNRIFACTTKGKTNYSAVAYEAGDVLLFGPETRGLPMEVLETFPQEN 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN+ A+ Y Sbjct: 119 WLRLPMADTSRSLNLSNSVAIFAYEAWRQ 147 >gi|326800579|ref|YP_004318398.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21] gi|326551343|gb|ADZ79728.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21] Length = 176 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 21/63 (33%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + ALI G E G+ + + + G + NV +A + L+ Sbjct: 108 HRFTPVLGESYALIFGNEVNGVSEEAMKLIDYCVEIPQFGTKHSFNVVISAGIVLWDFYR 167 Query: 279 HFA 281 Sbjct: 168 KLK 170 >gi|227499734|ref|ZP_03929834.1| tRNA methylase [Anaerococcus tetradius ATCC 35098] gi|227218201|gb|EEI83464.1| tRNA methylase [Anaerococcus tetradius ATCC 35098] Length = 152 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 2/126 (1%) Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 + + R + + +G + + + + + + Sbjct: 22 CVLTESRLHLIRPFKFDFSDRFLKRAGIDYWEKVDLVIHDSLEEFMEFVKDKRYFLIETP 81 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMPGIIK-ALNVSNAAAVAL 273 S K D LI G E +G+ + + + M I +LN++N+ ++ L Sbjct: 82 SDKKYTDVSFKDGDYLIFGREKEGIDESLLKANKDKILTIPMTKKIDRSLNLANSVSIVL 141 Query: 274 YITQNH 279 Y Sbjct: 142 YEALRQ 147 >gi|116253504|ref|YP_769342.1| rRNA methyltransferase [Rhizobium leguminosarum bv. viciae 3841] gi|115258152|emb|CAK09253.1| putative rRNA methyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 231 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 83/220 (37%), Gaps = 5/220 (2%) Query: 59 AALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 A LL L P PV +D +VG LAL Sbjct: 4 EAHAAGRGFFAEKILLLRNRVEGVLPILERFPADVPVYVAGADVLDGVVGFHLHRGVLAL 63 Query: 117 ETAPL--LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 + LDA+ L++V +++ N G++ R+A AF D ++ + Sbjct: 64 GRRQDRGEAALLDALPERALVLVGCGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYR 123 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + G++ +P+ R D L + GF LS + + + ++AL++G Sbjct: 124 KALRVSVGSVLSVPHRRGGKALDVLVALAERGFAIWTLSPHGRTDIRAIPASMRMALVVG 183 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 EG+GL A + + +LN + A +AL+ Sbjct: 184 TEGEGLPDALLARF-QSARIPQSEELDSLNAATATGIALF 222 >gi|148652780|ref|YP_001279873.1| tRNA/rRNA methyltransferase SpoU [Psychrobacter sp. PRwf-1] gi|148571864|gb|ABQ93923.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter sp. PRwf-1] Length = 180 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 56/158 (35%), Gaps = 10/158 (6%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL H P+N G+ +R + + L ++ E+ Sbjct: 1 MTIHIVLVHPKIPNNTGSAIRLCANTGAQLHLVEPLGFDLDDKKLRRAGLDYHEYAAMQV 60 Query: 192 ISNLTDALQKMHSWGFQTI--------GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 N A + + + G + + +++ IAL+ G+E GL Sbjct: 61 HKNWQVAKEALQAAGCHKMVALTTKLSHPFYEYDFGDSNAAEHESIALVFGSETAGLADD 120 Query: 244 TQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + ++ L M ++LN++N+ ++ LY Sbjct: 121 IRADIGESNWLRLPMLPDSRSLNLANSISICLYEVWRQ 158 >gi|330718906|ref|ZP_08313506.1| tRNA/rRNA methyltransferase [Leuconostoc fallax KCTC 3537] Length = 221 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 11/211 (5%) Query: 46 PENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103 F+YG H AL K+ K V++VP +D+ Sbjct: 9 ANTDFIYGHHASVEALKAGQTINKVLLQSGLKGKHINEILQLAKKKQLVVQSVPKSKLDE 68 Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156 I + HQG+AL A TLD + ++LD + DPHN+G+ILR+A A Sbjct: 69 IS-EGGTHQGVALSVAAFQYATLDDLFDRAQEKSETPFFIILDGIEDPHNLGSILRTADA 127 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 G+I KR + +A +AK ++GA+EH+P +R++NL + + + G + + Sbjct: 128 AGVHGVIIPKRRAVQLTATVAKISTGAIEHVPVVRVTNLANTVTTLKERGLWI-FGTDMA 186 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + AL++G EGKG+ P ++ Sbjct: 187 GEDYRHLDATGPTALVIGNEGKGISPLLKKK 217 >gi|33322427|gb|AAQ06939.1|AF496269_1 trmh family RNA methyltransferase [Lactobacillus delbrueckii subsp. lactis] Length = 83 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 32/52 (61%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 D++A+ILG+EG GL P+T + + M + +LNV+ A+++A + + Sbjct: 29 DRLAVILGSEGPGLLPQTIAESDYTIKIPMAERVDSLNVAAASSLAFWEVKK 80 >gi|172056702|ref|YP_001813162.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15] gi|171989223|gb|ACB60145.1| RNA methyltransferase, TrmH family, group 2 [Exiguobacterium sibiricum 255-15] Length = 157 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +V+ P N G I R+ A + ++ L ++ E + Sbjct: 1 MAIHVVMYQPEIPQNTGNISRTCAATHSVLHLIRPLGFSTDDKQLKRAGLDYWEFVDVRY 60 Query: 192 ISNLTD-ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT 249 +L + + + ++ + + G E KGL E Sbjct: 61 HDSLEELWDKHPDGTFYYITKYGEKYPSQVDLSNVEEDYFFVFGRETKGLPLNVIDENLE 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L ++++LNVSN AA+ +Y Sbjct: 121 RCIRLPQSNLVRSLNVSNTAAIIVYEALRQ 150 >gi|114704756|ref|ZP_01437664.1| RNA methyltransferase [Fulvimarina pelagi HTCC2506] gi|114539541|gb|EAU42661.1| RNA methyltransferase [Fulvimarina pelagi HTCC2506] Length = 150 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 21/60 (35%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 D ++ G E G+ + A + + M +++N+S + A+ Sbjct: 90 WDFEFRDDDIVMFGRETAGVPVEVHAAADARLTIPMQTGARSMNLSASVALVCGEAVRQL 149 >gi|329935710|ref|ZP_08285515.1| rRNA methylase [Streptomyces griseoaurantiacus M045] gi|329304801|gb|EGG48674.1| rRNA methylase [Streptomyces griseoaurantiacus M045] Length = 266 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 73/241 (30%), Gaps = 16/241 (6%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRK-------IFQLLATKNALARLDWDANLPHPFPVK 94 H + L G H + AL +R LA LA + V Sbjct: 29 HREAGGAVLLDGFHALKHALRFGARVPVALATDRAAALALAEELAPDVREGLAALLTEVP 88 Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 + + V L ++VLD+ + N GA++R A Sbjct: 89 ESSYRALLARPHPTGVAALAGRPAREANLRALAHAPRRAPVVVLDNPRNLGNAGAVIRLA 148 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F G++TT P V+ A + Sbjct: 149 AGFGATGVVTTGTLDPWHPTVVRGGAGLHFATAVERMDVADLPEGP---------VYALD 199 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + D+ L G+E GL P+ + A + L M + + N++ + +AL+ Sbjct: 200 PEGEDIRRVRLPDEALLAFGSERSGLSPELRARADRLVALPMRPQVSSYNLATSVGMALF 259 Query: 275 I 275 Sbjct: 260 H 260 >gi|262276838|ref|ZP_06054631.1| RNA methyltransferase, TrmH family, group 2 [alpha proteobacterium HIMB114] gi|262223941|gb|EEY74400.1| RNA methyltransferase, TrmH family, group 2 [alpha proteobacterium HIMB114] Length = 147 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 2/148 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L + L + P N AI+R+ I L + L Sbjct: 1 MLNIALYQPDIPQNTAAIIRTCACLGLKLEIIKPAGFVLNEKKLDRIYMDYL--KDCEIF 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + + + I ++ + + I L+ G+E KG+ + T + Sbjct: 59 YHESFDTFVKSKKQKRIILFTTKTTNNYTKFIFKKNDTLLFGSESKGVSEEVHGTIKNKL 118 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + ++LN++ + A+A F Sbjct: 119 NIPIKNNTRSLNLATSVAIASSEALRQF 146 >gi|168185518|ref|ZP_02620153.1| putative Hypothetical tRNA/rRNA methyltransferase homolog [Clostridium botulinum C str. Eklund] gi|169296507|gb|EDS78640.1| putative Hypothetical tRNA/rRNA methyltransferase homolog [Clostridium botulinum C str. Eklund] Length = 160 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 52/155 (33%), Gaps = 3/155 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + L +VL P N G I R+ V + + + L ++ H+ Sbjct: 1 MLDTPNLNIVLFEPEIPQNTGNIGRTCVLTNSKLHLIKPLGFRIDDKSLKRAGLDYWPHL 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246 + D ++K + + + K ++ ++ G E GL + + Sbjct: 61 DVEIHESFDDMIKKY-PNANIYLSTTKEPKYHHDEVNYKKGDFIVFGRESSGLPDYIRDK 119 Query: 247 TATSMAHLHMPGII-KALNVSNAAAVALYITQNHF 280 + + M ++LN+SN ++ Y Sbjct: 120 YVENRIRVPMIKTTTRSLNLSNTVSIVAYEALRQL 154 >gi|319953759|ref|YP_004165026.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM 14237] gi|319422419|gb|ADV49528.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM 14237] Length = 151 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 2/99 (2%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + + + + SS K D + LI G E KGL + Sbjct: 52 YWQHISLTIYDSIEDFYLKNSDKEFVYFSSHGDKTHWDIDFKDNLFLIFGKESKGLPEEI 111 Query: 245 -QETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 + + S+ + + +++LN++NA ++ +Y + Sbjct: 112 TAQNSNSLYKIPLHSDHVRSLNLANAVSIVVYEGLRQLS 150 >gi|313246736|emb|CBY35609.1| unnamed protein product [Oikopleura dioica] Length = 1335 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 9/220 (4%) Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 N + F+ L+ + + R + + +D + E + + + P Sbjct: 1119 KNATSSCFKFLSFETEIDRFYKLKTSKEDDKIS----RDLDDLSLDEPTN--VQQKITPW 1172 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 + +L ++ + L++ + D N + + S +S A Sbjct: 1173 IQDSLIDKKSCEGLVICASLIDKANNLGGITRTAEVFGAESLAISNLSILKSKDYTSLAV 1232 Query: 182 GALEHIPYIR---ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 A++ I I+ L + + +E+ K ++LG E + Sbjct: 1233 TAMKWIDIQEVKAINLQKWLLSMKMKGYCLAGLEQTTNSISIEKFDFPKKCVVVLGNERE 1292 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 G+ + + GII++LNV +AA++++ Sbjct: 1293 GIPTNIISLLDVVLEIPQKGIIRSLNVHVSAAISIWEYTR 1332 >gi|332702162|ref|ZP_08422250.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio africanus str. Walvis Bay] gi|332552311|gb|EGJ49355.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio africanus str. Walvis Bay] Length = 256 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K ++AL+ G+E KGL + + + + + +LN++ A V LY Sbjct: 107 KGKRVALVFGSEDKGLENEEIQMCGQLVTIPTAREMSSLNLAQAVLVLLYECFRQ 161 >gi|255030658|ref|ZP_05302609.1| hypothetical protein LmonL_18963 [Listeria monocytogenes LO28] Length = 126 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 1/77 (1%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALN 264 + ++ N + G E GL E + + M I++LN Sbjct: 33 FYYITKFGRHVYSDIDYSDTNKDYFFVFGKETTGLPDALLQENEENCLRIPMTDHIRSLN 92 Query: 265 VSNAAAVALYITQNHFA 281 +SN AA+ Y Sbjct: 93 LSNTAAILAYEALRQQN 109 >gi|149199824|ref|ZP_01876854.1| tRNA/rRNA methyltransferase [Lentisphaera araneosa HTCC2155] gi|149137112|gb|EDM25535.1| tRNA/rRNA methyltransferase [Lentisphaera araneosa HTCC2155] Length = 168 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 1/150 (0%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +++VLD + HN+G I R A A + + + T + L K+A G E + Sbjct: 19 VIVVLDRLRSAHNVGNIFRLADAANVEAVYTCGYTASPPHPKLEKTAMGTDEFVNCEHFD 78 Query: 194 NLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + +A+ + G++ + + + + + K A + G E G++ +T E Sbjct: 79 HSLEAVGSLKKNGYRVYAVDTIDSAIDVHEAQFSGKCAFVFGNEALGIQQETLEACDEYI 138 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFAK 282 L+ G ++NVSN AAV L+ K Sbjct: 139 RLNAHGRKNSINVSNCAAVVLFQASYKLRK 168 >gi|72382186|ref|YP_291541.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus str. NATL2A] gi|72002036|gb|AAZ57838.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus str. NATL2A] Length = 166 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 10/154 (6%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L P N G I R+ +AF+ I E L ++ H+ + Sbjct: 11 VALFEPRIPQNTGTIGRTCLAFNMSLDIIKPTGFSFEDKYLKRAGLDYWPHVDVHLYESF 70 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + S++ I D L+ G E GL +A + Sbjct: 71 EQYKNSFKNSRIIALTKKSNNLISN--IIYKDTDILLFGREDTGLPESIINKCEIVAGIP 128 Query: 256 MP--------GIIKALNVSNAAAVALYITQNHFA 281 MP G +++LN+S A+ + Y Sbjct: 129 MPGGENQLKTGGVRSLNLSVASGIVCYSACLQLN 162 >gi|15838566|ref|NP_299254.1| tRNA/rRNA methylase [Xylella fastidiosa 9a5c] gi|9107078|gb|AAF84774.1|AE004016_8 tRNA/rRNA methylase [Xylella fastidiosa 9a5c] Length = 148 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 M+L P N G ++R + + L ++ E+ NL Sbjct: 1 MLLYQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLDDRRLKRAGLDYHEYARMQVHPNL 60 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253 + AL + + + + A I G E +GL T + + Sbjct: 61 SSALAAIAPRRLFALSTRGQMRYDTPT--FSTGDAFIFGPETRGLPDTVLHTIPESQRLY 118 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 119 LPMQPQSRSLNLSNAVAVMVFEAWRQ 144 >gi|33599281|ref|NP_886841.1| rRNA methylase [Bordetella bronchiseptica RB50] gi|33575327|emb|CAE30790.1| rRNA methylase [Bordetella bronchiseptica RB50] Length = 172 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 45/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G +R + + A L ++ E P Sbjct: 17 MFHVVLVSPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDARLRRAGLDYHEWQPVQVH 76 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 L AL + + L++ + L + G E GL Sbjct: 77 DTLPQALAATGAAAARVFALTTRAPASLADMAFQAGDVFVFGRETAGLSEAHMALFGPAQ 136 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 137 QLRLPMRPGQRSLNLSNAVAVTVFEAWRQ 165 >gi|33595003|ref|NP_882646.1| rRNA methylase [Bordetella parapertussis 12822] gi|33565079|emb|CAE40030.1| rRNA methylase [Bordetella parapertussis] Length = 172 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 45/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G +R + + A L ++ E P Sbjct: 17 MFHVVLVSPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDARLRRAGLDYHEWQPVQVH 76 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 L AL + + L++ + L + G E GL Sbjct: 77 DTLPQALAATGAAAARVFALTTRAPASLADMAFQAGDVFVFGRETAGLSEAHMALFGPAQ 136 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 137 QLRLPMRPGQRSLNLSNAVAVTVFEAWRQ 165 >gi|323435932|ref|ZP_01049071.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|321496247|gb|EAQ40305.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 164 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 32/51 (62%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 KI+L++GAE G+ P+ E +AH+ M GI ++NV+ AA +ALY Sbjct: 114 KISLVIGAESTGVTPEALEQCAVIAHIPMHGINSSMNVAQAAGIALYELTR 164 >gi|315633425|ref|ZP_07888716.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393] gi|315477925|gb|EFU68666.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393] Length = 158 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDY--HEFADIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + T + L++ + L+ G E +G+ + A Sbjct: 59 KHKTFEAFLQSEQPKRLFALTTKGTPAHSEVKFELGDYLMFGPETRGIPMDILNSMPAEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148 >gi|255536513|ref|YP_003096884.1| RNA methylase, SpoU family [Flavobacteriaceae bacterium 3519-10] gi|255342709|gb|ACU08822.1| RNA methylase, SpoU family [Flavobacteriaceae bacterium 3519-10] Length = 197 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 3/157 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 T + + L +VLD+V HN+GAI R+A AF + ++ + K+A GA Sbjct: 38 TFKQTQKTGLTVVLDNVRSMHNVGAIFRTADAFLIEKVVLCGITPQPPHREIHKAALGAT 97 Query: 185 EHIPYIRISNLT---DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 E + +I + ++ + L+K + S+ K K+ K A++LG E GL Sbjct: 98 ESVEWIYVDTVSAALETLKKENYTVIGIEQTSNSQKIGDYHISKDQKYAVVLGNEVDGLS 157 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + G +LNVS + ++ Sbjct: 158 EDALALYDAFLEIPQLGTKHSLNVSVCGGIVMWEFFK 194 >gi|157415161|ref|YP_001482417.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81116] gi|157386125|gb|ABV52440.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 81116] gi|307747804|gb|ADN91074.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni M1] gi|315932614|gb|EFV11545.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp. jejuni 327] Length = 155 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G+I R I + ++ + + I Sbjct: 1 MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIIKPTVFDISQKAVRRAGLDYWDKLEPIIW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 NL + L + + + ++ S+K L G+E GL + + Sbjct: 61 ENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFGSESYGLPMELMQLNWENA 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ + + Y Sbjct: 121 ITIPMKSYGRSLNLATSVGIISYEALRQ 148 >gi|296120116|ref|ZP_06838670.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes DSM 20306] gi|295967270|gb|EFG80541.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes DSM 20306] Length = 155 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 49/151 (32%), Gaps = 4/151 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +V D+ P N G +R+A + + L ++ H Sbjct: 1 MPLHIVFDNPVIPTNTGNAIRTAAVTGAKLHLVEPLGFNFDDKHLKRAGLDY--HDLADL 58 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--AT 249 + G + ++++ D L+ G E GL + T Sbjct: 59 KIHPDFDACMDALPGARVFAFTTNATDWFTDVEYTDGDVLLFGTEPTGLPAEHLAHPRIT 118 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNAA+ A+Y Sbjct: 119 QEVRIPMVPARRSMNLSNAASTAVYEAWRQL 149 >gi|293343446|ref|XP_002725485.1| PREDICTED: rCG50916-like [Rattus norvegicus] Length = 1500 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q +K L+LG E +G+ + + GII++LNV + A+ ++ Sbjct: 1433 QYRFPEKSLLLLGNEREGIPVNLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1490 >gi|223935595|ref|ZP_03627511.1| tRNA/rRNA methyltransferase (SpoU) [bacterium Ellin514] gi|223895603|gb|EEF62048.1| tRNA/rRNA methyltransferase (SpoU) [bacterium Ellin514] Length = 155 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +V+ P N G + R A + + L ++ + + + + +N Sbjct: 3 IVMVEPEIPPNTGNVARLCAATKTRLHLIEPLGFKLDDKQLKRAGMDYWQQVEWRQWANW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254 +++ + S + E + + L+ G E GL + E L Sbjct: 63 KTFCEQLPADARLWFVESDGPRLYTEVQYLPE-DYLVFGRETAGLPKQLLKENPERWLRL 121 Query: 255 HMPG-IIKALNVSNAAAVALYITQNH 279 M ++LN+SN AA+ L+ Sbjct: 122 PMFNAESRSLNLSNCAAIVLFEALRQ 147 >gi|70606436|ref|YP_255306.1| SpoU rRNA methylase [Sulfolobus acidocaldarius DSM 639] gi|68567084|gb|AAY80013.1| SpoU rRNA methylase [Sulfolobus acidocaldarius DSM 639] Length = 235 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 K+ K+A I G E GL + + + + LN+S+A + LY + Sbjct: 102 KDKKVAFIFGRESVGLTREEIAKSDFLLFIPANPEYPVLNLSHAVGIVLYELWRNR 157 >gi|270265372|ref|ZP_06193633.1| hypothetical protein SOD_m01040 [Serratia odorifera 4Rx13] gi|270040776|gb|EFA13879.1| hypothetical protein SOD_m01040 [Serratia odorifera 4Rx13] Length = 147 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q K+ L+LG E GL + + G +++LNVS A + L Sbjct: 87 QAKLPSKMVLVLGQERDGLSDSAWQQGDMSVSIGGTGKVESLNVSVATGILLADWWRQ 144 >gi|119962280|ref|YP_948432.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1] gi|119949139|gb|ABM08050.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens TC1] Length = 155 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + L+ G E GL ++ T+ L M +++LN++NAA++A++ Sbjct: 86 YTDISYREGDVLMFGPESVGLPDWLKQDPHVTARVRLPMKPSLRSLNLANAASIAVFEAW 145 Query: 278 NH 279 Sbjct: 146 RQ 147 >gi|153955993|ref|YP_001396758.1| hypothetical protein CKL_3384 [Clostridium kluyveri DSM 555] gi|146348851|gb|EDK35387.1| Hypothetical protein CKL_3384 [Clostridium kluyveri DSM 555] Length = 155 Score = 71.8 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 4/151 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ V + + L ++ +++ Sbjct: 1 MSLNIVLFEPEIPQNTGNIARTCVLTGSRLHLIKPLGFSLDEKHLRRAGLDYWKYLDLTL 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 + ++ + F K + D+ ++ G E GL K ++ Sbjct: 61 YDCYEELRERYKNGTFYFSTTHG--KNFYQHAKFKDEDFIVFGKESCGLPDKIRDSNPEK 118 Query: 251 MAHLHMPGII-KALNVSNAAAVALYITQNHF 280 L M ++LN+SNA A+ +Y Sbjct: 119 NIRLPMIKTTTRSLNLSNAVAIVVYEALRQL 149 >gi|269218564|ref|ZP_06162418.1| putative 23S rRNA methyltransferase [Actinomyces sp. oral taxon 848 str. F0332] gi|269211675|gb|EEZ78015.1| putative 23S rRNA methyltransferase [Actinomyces sp. oral taxon 848 str. F0332] Length = 281 Score = 71.8 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 89/284 (31%), Gaps = 29/284 (10%) Query: 22 KLRRNHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 KLR ++Q + + S+ + G V L S L T+ A+ Sbjct: 2 KLRTKEATRSQLQRAQRLHRREQRSRHGQTLVEGPQAVRELLACASGLARDLYVTEEAIE 61 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 R A L V T D +A+ + P + + L++ Sbjct: 62 RHGDVAELASAAGVWTHVLAAQDMRDLSADAQGVVAVISTPEAPGLNSLLGEASLVVATL 121 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI--------- 190 + DP N+G I+R+A A D + K + S + +SA+G+ H+P + Sbjct: 122 DIADPGNLGTIIRTADAAGADAVAVGKASAELYSPKVMRSAAGSHFHVPCVAGVEASELA 181 Query: 191 --------RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 ++ + + + + +G E +G Sbjct: 182 ARAREAGLQVLTAEGTGEWELPVLIREAAEARILGAAPSGPDLRRRTLWFVGNEARG--- 238 Query: 243 KTQETATS----MAHLHMPGIIKALNVSNAAAVALYI-TQNHFA 281 + + G ++LNVS A AV Y A Sbjct: 239 --FAGCDFDVDARVAVPLYGKAESLNVSTALAVCAYASAMAQRA 280 >gi|25027214|ref|NP_737268.1| putative rRNA methylase [Corynebacterium efficiens YS-314] gi|23492495|dbj|BAC17468.1| putative rRNA methylase [Corynebacterium efficiens YS-314] Length = 173 Score = 71.8 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 50/161 (31%), Gaps = 5/161 (3%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 T+ + L +V D+ P N G +R + Sbjct: 10 PRSTIFPMSVPPLHVVFDNPVIPPNTGNAIRMCAGTGAHLHLVEP---LGFDLTEKHLRR 66 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 L++ ++ + + + ++ + AL+ G E GL Sbjct: 67 AGLDYHDLADVTVHANIEDCFGALPGRIFAFTTQATGWFTDITYQPGDALLFGTEPTGLP 126 Query: 242 PK--TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + T+ + M +++N+SN+AAVA Y Sbjct: 127 HEHIIHPRVTAEVRIPMLEGRRSMNLSNSAAVATYEAWRQL 167 >gi|86153504|ref|ZP_01071708.1| rRNA methylase, SpoU family [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612429|ref|YP_001000579.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81-176] gi|167005510|ref|ZP_02271268.1| RNA methyltransferase, TrmH family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|85843230|gb|EAQ60441.1| rRNA methylase, SpoU family [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249452|gb|EAQ72412.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 81-176] Length = 155 Score = 71.8 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G+I R I + ++ + + I Sbjct: 1 MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAVRRAGLDYWDKLEPIIW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 NL + L + + + ++ S+K L G+E GL + + Sbjct: 61 ENLEEFLNENMIYKNRFFFATTKSQKAYFDAKFQKNDFLFFGSESYGLPMELMQLNWENA 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ + + Y Sbjct: 121 ITIPMKSYGRSLNLATSVGIISYEALRQ 148 >gi|212712554|ref|ZP_03320682.1| hypothetical protein PROVALCAL_03649 [Providencia alcalifaciens DSM 30120] gi|212684770|gb|EEB44298.1| hypothetical protein PROVALCAL_03649 [Providencia alcalifaciens DSM 30120] Length = 167 Score = 71.8 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 48/158 (30%), Gaps = 10/158 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R + + L ++ E Sbjct: 1 MPHIVLFEPEIPPNTGNIIRLCANTGFSLHLIHPLGFTWDDKRLRRAGLDYSEFADIKHH 60 Query: 193 SNLT--------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + G + L++ K + L+ G E +GL P Sbjct: 61 HDYYAFLESEGLNPDNNQSPTGARVFALTTKGKPSHSNVSYREDDYLMFGPETRGLPPYV 120 Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M +++N+SN+ AV ++ T Sbjct: 121 LDNMPIEQKIRIPMLAESRSMNLSNSVAVVVFETWRQL 158 >gi|15889520|ref|NP_355201.1| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58] gi|15157398|gb|AAK87986.1| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58] Length = 161 Score = 71.8 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 46/144 (31%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + P N G ILR A I L ++ + R + Sbjct: 14 IALYQPDIPGNTGTILRLAACLGLGVDIIEPAGFDISDRNLKRAGMDYIAAAALTRHVSW 73 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + S G + + S+ + P L+ G E G+ + A + Sbjct: 74 DRFEEWRASTGRRLVLASTRAALPYTDITYRADDILLFGRESAGVPDHVHDKADERIIIP 133 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 M +++NV+ +AA+ Sbjct: 134 MVAGQRSINVAMSAAMVTGEALRQ 157 >gi|254362587|ref|ZP_04978683.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica PHL213] gi|261491660|ref|ZP_05988242.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494221|ref|ZP_05990721.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094194|gb|EDN75079.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica PHL213] gi|261310124|gb|EEY11327.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312675|gb|EEY13796.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 159 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPFGFGWDDKKLRRSGLDY--HEFVDIQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + L++ ++ L+ G E +G+ + Sbjct: 59 KYKNFEDFLERAKPKRLFALTTRGEQNHSDVKYELGDFLMFGPESRGIPKPLLAEMPMSQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y F Sbjct: 119 KIRIPMCKDSRSMNLSNSVAVVVYEAWRQF 148 >gi|332671773|ref|YP_004454781.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484] gi|332340811|gb|AEE47394.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484] Length = 154 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L+ G E GL T + M +++N+SNAAAVA Y Sbjct: 91 YREDDVLLFGPEPTGLPADVLAHPRVTDQLRIPMLPGRRSMNLSNAAAVATYEAWRQL 148 >gi|315929850|gb|EFV09013.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp. jejuni 305] Length = 155 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G+I R I + ++ + + I Sbjct: 1 MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIIKPTVFDISQKAVRRAGLDYWDKLEPIIW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 NL + L + + + ++ S+K L G+E GL + + Sbjct: 61 ENLEEFLNENMIYKNRFFFATTKSQKAYFDAKFQKNDFLFFGSESYGLPMELMQLNWENA 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ + + Y Sbjct: 121 ITIPMKSYGRSLNLATSVGIISYEALRQ 148 >gi|323474724|gb|ADX85330.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus REY15A] gi|323477452|gb|ADX82690.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus HVE10/4] Length = 237 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 23/54 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 K+AL+ G E GL + + ++ LN+S+A + LY + Sbjct: 102 KKVALVFGRESVGLTREEIFRCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNR 155 >gi|33151545|ref|NP_872898.1| tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP] gi|33147765|gb|AAP95287.1| probable tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP] Length = 159 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLFEPEIPQNSGNIIRLCANCGFRLHMIEPFGFTWDDKKLKRSGLDY--HEFVDIQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + L++ + Q L+ G E +G+ ET + Sbjct: 59 KYTHFDDFLARAKPKRLFALTTKGEANHSQVQYEQGNFLMFGPESRGIPTAILETLPMSQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN AV +Y F Sbjct: 119 KIRVPMCKDSRSMNLSNTVAVVVYEAWRQF 148 >gi|54022887|ref|YP_117129.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] gi|54014395|dbj|BAD55765.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] Length = 154 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E GL + T + M +++N+SNAAAV +Y Sbjct: 91 YRPGDVLLFGTEPTGLPAEVLADPHITDRLRIPMLPGRRSMNLSNAAAVTVYEAWRQ 147 >gi|303249293|ref|ZP_07335525.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio fructosovorans JJ] gi|302489299|gb|EFL49256.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio fructosovorans JJ] Length = 264 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 85/235 (36%), Gaps = 12/235 (5%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIV 105 L G V L R I +L + + V +D++ Sbjct: 24 ELLPGRKPVRELLAERPRGIDDVLLRQGLRGPDIDAIVAACREARVRFRFVAAADLDRLC 83 Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+ A +LD V + + LD V DP N+G + R+ A Sbjct: 84 --PGNHQGVVARLAAGELTSLDDVLAATRAAPLPVAVALDRVQDPGNVGTLARTLFALGG 141 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKK 218 GI+ + AK+++G L +P +++NL A + + Sbjct: 142 GGILLPRHEGARLGPGAAKASAGTLARLPVAKVTNLAQALDAAIEAGFSIVGAAGEPEAD 201 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + L+LG E +G+R ++ + + I +LNV+ A A+ L Sbjct: 202 NALEATADFPLILVLGNEDEGIRQGIRKRCGRLWRIPQARPIDSLNVAQAGAIIL 256 >gi|221133703|ref|ZP_03560008.1| RNA methyltransferase [Glaciecola sp. HTCC2999] Length = 154 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 43/149 (28%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + + ++ H Sbjct: 1 MLDIVLYEPEIPPNTGNIIRLCANSGFALHLIEPLGFEWDDKKVRRAGLDY--HEFANVQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETA-TS 250 + + + ++ + LI G E +GL Sbjct: 59 RHANLDAYLASAKPQRIFACTTKGSMFHSKASYAPGDCLIFGPETRGLPHDFILSLPPEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++N+SN+ AV +Y Sbjct: 119 RVRIPMLSDSRSMNLSNSVAVFIYEAWRQ 147 >gi|19551878|ref|NP_599880.1| SpoU class rRNA methylase [Corynebacterium glutamicum ATCC 13032] gi|62389537|ref|YP_224939.1| tRNA/rRNA methyltransferase protein [Corynebacterium glutamicum ATCC 13032] gi|145294815|ref|YP_001137636.1| hypothetical protein cgR_0762 [Corynebacterium glutamicum R] gi|21323412|dbj|BAB98040.1| Predicted rRNA methylase (SpoU class) [Corynebacterium glutamicum ATCC 13032] gi|41324871|emb|CAF19353.1| PUTATIVE TRNA/RRNA METHYLTRANSFERASE PROTEIN [Corynebacterium glutamicum ATCC 13032] gi|140844735|dbj|BAF53734.1| hypothetical protein [Corynebacterium glutamicum R] Length = 157 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 5/154 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + L ++ D+ P N G +R + L++ Sbjct: 1 MPEHPLHVIFDNPVIPPNTGNAIRMCAGTGAHLHLVEP---LGFELTEKHLRRAGLDYHD 57 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ + M + + ++ + AL+ G E GL + E + Sbjct: 58 LADVTVHATFDEAMAAVPGRVFAFTTTANTRFTDIAFEPGDALLFGTEPTGLPQEHVEHS 117 Query: 249 --TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 TS + M +++N+SN+AAVA Y Sbjct: 118 RITSELRIPMLPGRRSMNLSNSAAVATYEAWRQL 151 >gi|116671282|ref|YP_832215.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] gi|116611391|gb|ABK04115.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] Length = 155 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E GL + + TS L M +++LN++NAA++A++ Sbjct: 91 YLPGDVLLFGPESVGLPAELKNDPHVTSRVRLPMLPSLRSLNLANAASIAVFEAWRQ 147 >gi|88801799|ref|ZP_01117327.1| putative SpoU rRNA methylase family protein [Polaribacter irgensii 23-P] gi|88782457|gb|EAR13634.1| putative SpoU rRNA methylase family protein [Polaribacter irgensii 23-P] Length = 175 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 67/160 (41%), Gaps = 3/160 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + + L+++LD++ +NIGA+ R++ AF + I + + + K+A GA Sbjct: 16 EFKEQKKTPLIVILDNIRSVNNIGAVFRTSDAFLIEKIYLCGICAIPPNKEIHKTALGAT 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLR 241 E + + + ++ + + + + DK A++LG E KG++ Sbjct: 76 ESVTWEYAEDTLTLIENLKKEKIKVLAIEQAEGSTKLDVFFPDKGEKYAIVLGNEVKGVQ 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + A + G +LN+S A V ++ Sbjct: 136 QEVVDAADVCIEIPQLGTKHSLNISVTAGVVIWDLFQKLT 175 >gi|325570819|ref|ZP_08146502.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC 12755] gi|325156329|gb|EGC68511.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC 12755] Length = 236 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 56/175 (32%), Gaps = 2/175 (1%) Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 E V + + + S +VL P N G I R+ A + + Sbjct: 44 MENVRCKNTNQCENRSAISDRKEFLSMNHIVLFEPQIPANTGNIARTCAATNTHLHLIEP 103 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 ++ L ++ + +L + + I ++ + Sbjct: 104 LGFSTDDKQLKRAGLDYWHDVNITYHKDLATFMDFLGERPLYLISKFANRVYSDVDYTAD 163 Query: 227 DKIALILGAEGKGLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 D I G E GL +E A + M +++LN+SN AA+ +Y Sbjct: 164 DDQFFIFGKETTGLPESFMREHAEKCLRIPMNDEHVRSLNLSNTAALIIYEVLRQ 218 >gi|221233441|ref|YP_002515877.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000] gi|220962613|gb|ACL93969.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000] Length = 154 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 47/144 (32%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L P N+GA +R F + P L ++A R + Sbjct: 3 IALFQPGIPQNVGACIRLTACFGLGLDVIEPCSFPLNDKSLKRAALDYGSLSHLTRHDSW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 L+ + + ++ P + L+ G E +G + A + Sbjct: 63 ETFLKAPERVDGRLLLFTTKGATPFHRFSFEPGDTLLFGNESRGAPEEVHAAAHGRIVIP 122 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 + +++N++ AA+AL Sbjct: 123 IRPEARSMNLATTAAMALGEALRQ 146 >gi|16124726|ref|NP_419290.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|13421646|gb|AAK22458.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] Length = 160 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 47/144 (32%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L P N+GA +R F + P L ++A R + Sbjct: 9 IALFQPGIPQNVGACIRLTACFGLGLDVIEPCSFPLNDKSLKRAALDYGSLSHLTRHDSW 68 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 L+ + + ++ P + L+ G E +G + A + Sbjct: 69 ETFLKAPERVDGRLLLFTTKGATPFHRFSFEPGDTLLFGNESRGAPEEVHAAAHGRIVIP 128 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 + +++N++ AA+AL Sbjct: 129 IRPEARSMNLATTAAMALGEALRQ 152 >gi|227827666|ref|YP_002829446.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus M.14.25] gi|229584870|ref|YP_002843372.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus M.16.27] gi|238619837|ref|YP_002914663.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus M.16.4] gi|227459462|gb|ACP38148.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus M.14.25] gi|228019920|gb|ACP55327.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus M.16.27] gi|238380907|gb|ACR41995.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus M.16.4] Length = 237 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 23/54 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 K+AL+ G E GL + + ++ LN+S+A + LY + Sbjct: 102 KKVALVFGRESVGLTREEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNR 155 >gi|145225467|ref|YP_001136145.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK] gi|145217953|gb|ABP47357.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK] Length = 154 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E GL T T + M ++LN+SNAAAVA+Y Sbjct: 91 YEPGDVLMFGPEPTGLDEATLADPHITGQVRIPMLSGRRSLNLSNAAAVAVYEAWRQ 147 >gi|157138295|ref|XP_001664217.1| hypothetical protein AaeL_AAEL013974 [Aedes aegypti] gi|108869532|gb|EAT33757.1| conserved hypothetical protein [Aedes aegypti] Length = 451 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +Q + L+LG E +GL +A + G++++LNV A+ ++ Sbjct: 387 QQIEFPKRSILVLGHEKEGLPAHIISHLDIIAEIPQFGVVRSLNVHVTGAIFMWEYAKQ 445 >gi|300870081|ref|YP_003784952.1| RNA methyltransferase [Brachyspira pilosicoli 95/1000] gi|300687780|gb|ADK30451.1| RNA methyltransferase [Brachyspira pilosicoli 95/1000] Length = 167 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 1/153 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 N + + L P N G I R V + I +K + + ++ E + Sbjct: 9 NENFNVSIALYRPEIPSNTGNIGRLCVGLNISLHIVSKPSFILSAKEIRRAGLDYWEKLN 68 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET- 247 I+ N L+ + + +S ++ +D L+ G E GLR E Sbjct: 69 LIKHENEHTFLEYCKENNKRIVPISKFGHIRYDEFNYSDNDILLFGRESTGLRESIWEND 128 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + +L M I+++NVSN AA+ Y Sbjct: 129 AANSVYLPMSDDIRSINVSNTAAIVSYEAFRQL 161 >gi|257092700|ref|YP_003166341.1| tRNA/rRNA methyltransferase SpoU [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045224|gb|ACV34412.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 154 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G+E +GL L M ++LN+SNA AV ++ Sbjct: 91 FAAGDVFVFGSETRGLPAAVLAEFADDWRLRLPMLPGQRSLNLSNAVAVTVFEAWRQ 147 >gi|320163521|gb|EFW40420.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864] Length = 2069 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K ++LG E G+ + + G++++LNV +AA+ ++ Sbjct: 2003 NFSFPQKSLILLGRERTGIPVDLIQLLDVCVEIPQFGVVRSLNVHVSAALMVWEYARQ 2060 >gi|57237733|ref|YP_178981.1| RNA methyltransferase [Campylobacter jejuni RM1221] gi|148926586|ref|ZP_01810268.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8486] gi|205356389|ref|ZP_03223154.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8421] gi|57166537|gb|AAW35316.1| RNA methyltransferase, TrmH family [Campylobacter jejuni RM1221] gi|145845280|gb|EDK22374.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8486] gi|205345774|gb|EDZ32412.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8421] gi|315058344|gb|ADT72673.1| Putative RNA methyltransferase [Campylobacter jejuni subsp. jejuni S3] Length = 155 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G+I R I + ++ + + I Sbjct: 1 MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAVRRAGLDYWDKLEPIIW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 NL + L + + + ++ S+K L G+E GL + + Sbjct: 61 ENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFGSESYGLPMELMQLNWENA 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ + + Y Sbjct: 121 ITIPMKSYGRSLNLATSVGIISYEALRQ 148 >gi|301787005|ref|XP_002928920.1| PREDICTED: probable methyltransferase TARBP1-like [Ailuropoda melanoleuca] Length = 1548 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q ++ L+LG E +G+ + + GII++LNV + A+ ++ Sbjct: 1481 QYSFPERSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1538 >gi|281342333|gb|EFB17917.1| hypothetical protein PANDA_018980 [Ailuropoda melanoleuca] Length = 1374 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q ++ L+LG E +G+ + + GII++LNV + A+ ++ Sbjct: 1308 QYSFPERSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1365 >gi|85098226|ref|XP_960584.1| hypothetical protein NCU01404 [Neurospora crassa OR74A] gi|28922085|gb|EAA31348.1| predicted protein [Neurospora crassa OR74A] gi|38566824|emb|CAE76131.1| related to rRNA (guanine-N1-)-methyltransferase [Neurospora crassa] Length = 644 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 71/324 (21%), Positives = 116/324 (35%), Gaps = 66/324 (20%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 +++ R HRD + +T+ YG V AAL + RK+++L Sbjct: 296 ERRETDRTPRRELHRDLDTETPKSLSIPYTTAASQFL-YGTSVVEAALQSARRKLYKLYI 354 Query: 74 TKNA-LARLDWDANLPH-----PFPVKTVPPQTIDKI--VGKEAVHQGLALETAPLLSPT 125 A +L DA + V + + + + H G LE +PL P Sbjct: 355 YAGANREKLAKDAAIQKLAQRNKVETVFVNEEGLKMMDKMSGSRPHNGYILEASPLPQPP 414 Query: 126 L-----------------------------------------DAVRNSQLLMVLDHVNDP 144 + + + L++V+D + DP Sbjct: 415 VISLGEVVDAESGQGTTGYKVVLGHQSHEEALINGKSDFVAASSATHKPLVVVVDQILDP 474 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 N+GAILRS + TKR S S + V K+++GA E + I +L LQ Sbjct: 475 GNLGAILRSVSFLGATAVAITKRDSASLTPVALKASAGASESLTLFSIDHLPKFLQDSRE 534 Query: 205 WGFQTI------------GLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSM 251 G+ D + E + ++ LG+EG+GL + + A Sbjct: 535 NGWLVYAAVPRTSGSGNLQKHLDLHEIEEIDPLGKNPCILLLGSEGEGLPGQIKSKADYE 594 Query: 252 AHLH-MPGI--IKALNVSNAAAVA 272 ++ M G I +LNVS AA + Sbjct: 595 VNIPNMSGGTVIDSLNVSVAAGLL 618 >gi|212697338|ref|ZP_03305466.1| hypothetical protein ANHYDRO_01907 [Anaerococcus hydrogenalis DSM 7454] gi|212675787|gb|EEB35394.1| hypothetical protein ANHYDRO_01907 [Anaerococcus hydrogenalis DSM 7454] Length = 243 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 85/226 (37%), Gaps = 17/226 (7%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 + + + V + N + + F DK+ Sbjct: 28 SFIVESIKIV----DQIPEDFECEFIFVNEDMK-----DYKTDFKKIVFSNNLFDKLSLL 78 Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 E + +L +S+ +++LDH+ DP N+G I+RSA AFS II Sbjct: 79 ENP-----EGVSAVLKMKDKKEISSKKVLLLDHMQDPGNLGTIIRSAEAFSFKDIIFLNN 133 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + +++ G++ + +I + + + L+ K ++ D Sbjct: 134 CVDLYNEKTIRASMGSIFRLNFIDLELEDVKDLINKDYK---LILADMDGKSVDYFKSCD 190 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 KI L +G E G+ ++ + + M G I++LN + AA++ + Sbjct: 191 KIILAIGNEANGISKSLKDLSDDFVSIKMDGEIESLNAAIAASILM 236 >gi|156059718|ref|XP_001595782.1| hypothetical protein SS1G_03872 [Sclerotinia sclerotiorum 1980] gi|154701658|gb|EDO01397.1| hypothetical protein SS1G_03872 [Sclerotinia sclerotiorum 1980 UF-70] Length = 600 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 3/82 (3%) Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH---MPGII 260 + L+ ++ D L++G EG+GLR ++ A + M G + Sbjct: 496 RHMWPAASQEFVWSHKLQDPLREDPCILMVGGEGEGLRKNLRDLADVHISIKGASMRGKL 555 Query: 261 KALNVSNAAAVALYITQNHFAK 282 +LNVS A + A+ Sbjct: 556 DSLNVSVATGMLCGAFIRQTAR 577 >gi|167038402|ref|YP_001665980.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167038864|ref|YP_001661849.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X514] gi|256751142|ref|ZP_05492024.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus CCSD1] gi|300913551|ref|ZP_07130868.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561] gi|307723434|ref|YP_003903185.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X513] gi|320116806|ref|YP_004186965.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853104|gb|ABY91513.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X514] gi|166857236|gb|ABY95644.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750048|gb|EEU63070.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus CCSD1] gi|300890236|gb|EFK85381.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561] gi|307580495|gb|ADN53894.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X513] gi|319929897|gb|ADV80582.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 156 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 219 PLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMPG--IIKALNVSNAAAVALYI 275 D ++ G E GL ++ + M ++LN+SN+ A+ LY Sbjct: 86 YYHDVKYEDNSYILFGKETAGLPKWLIEKYYEDCIRIPMHEVISTRSLNLSNSVAIVLYE 145 Query: 276 TQNHF 280 Sbjct: 146 ALRQL 150 >gi|217032394|ref|ZP_03437889.1| hypothetical protein HPB128_25g42 [Helicobacter pylori B128] gi|216945961|gb|EEC24577.1| hypothetical protein HPB128_25g42 [Helicobacter pylori B128] Length = 179 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 2/165 (1%) Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 HQG+ + L+ +L ++ +Q L+VL + D NIG I RSA DG+I + Sbjct: 13 GNHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDF 70 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + + +S L + + T L +S + + K Sbjct: 71 AKELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKK 130 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 AL LG+E +GL K ++ + M +LNVS AA + + Sbjct: 131 CALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 175 >gi|168182173|ref|ZP_02616837.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum Bf] gi|237793536|ref|YP_002861088.1| hypothetical protein CLJ_B0265 [Clostridium botulinum Ba4 str. 657] gi|182674679|gb|EDT86640.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum Bf] gi|229264015|gb|ACQ55048.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657] Length = 155 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 6/151 (3%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ V + + + L ++ +++ Sbjct: 1 MSLNIVLFQPEIPQNTGNIARTCVLTNSRLHLIKPLGFSLDEKHLRRAGLDYWQYLDLSI 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-- 249 + + +K F +D ++ G E GL + ++ + Sbjct: 61 YESYEELREKYKDSNFYFSTTHG--NNFYTDVKYSDGDFIVFGRESSGLPDEIRD-SDPS 117 Query: 250 SMAHLHMPGII-KALNVSNAAAVALYITQNH 279 + M ++LN+SN A+ Y Sbjct: 118 KCIRVPMINTTTRSLNLSNTVAIVTYEALRQ 148 >gi|255528031|ref|ZP_05394867.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7] gi|255508270|gb|EET84674.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7] Length = 159 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 6/150 (4%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I R+ V +C + + L ++ +++ Sbjct: 6 NLNIVLFQPEIPQNTGNIARTCVLTNCKLHLIKPLGFSLDEKHLKRAGLDYWKYLDLEVY 65 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250 + + +K F + + ++ G E GL +E + Sbjct: 66 ESYEELREKYKDSTFYFSTTHG--DNFYHEVEFKEGDFIVFGRESCGLPDSVRE-SDPKR 122 Query: 251 MAHLHMPGII-KALNVSNAAAVALYITQNH 279 + M ++LN+SN A+ Y Sbjct: 123 CIRVPMINTTTRSLNLSNTVAIVAYEALRQ 152 >gi|227505320|ref|ZP_03935369.1| SpoU family rRNA methyltransferase [Corynebacterium striatum ATCC 6940] gi|227198022|gb|EEI78070.1| SpoU family rRNA methyltransferase [Corynebacterium striatum ATCC 6940] Length = 156 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 4/152 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 SQL +V D+ P N G +R+A + + L ++ H Sbjct: 1 MSQLHIVFDNPVIPTNTGNAIRTAAVTGASLHLIEPLGFNFDDKHLKRAGLDY--HDLAD 58 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--A 248 + G + ++ + K + L+ G E GL P+ Sbjct: 59 LQIHKDFDACMAALPGARVFAFTTHTDKWFTDVEFQEGDVLLFGTEPTGLPPEHVNHPRI 118 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T + M +++N+SNAA+ A+Y Sbjct: 119 TEQVRIPMVPARRSMNLSNAASTAVYEAWRQL 150 >gi|154707421|ref|YP_001423885.1| 23S rRNA methyltransferase [Coxiella burnetii Dugway 5J108-111] gi|154356707|gb|ABS78169.1| 23S rRNA methyltransferase [Coxiella burnetii Dugway 5J108-111] Length = 152 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 41/149 (27%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L P N G I+R + + L ++ I Sbjct: 1 MFHIALFEPEIPPNTGNIIRLCANAGASLYLIHPLGFSLDEKRLQRAGLDY--REWATII 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 K + ++ K + G E +GL + + + Sbjct: 59 HYDHFEAFKSAFAEHRIFACTTKGKTIYADVHYRSSDVFLFGPETRGLPAEIRTQFPDSQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++N++N ++ LY Sbjct: 119 QIRIPMVTEKRSINLANTVSIILYEAWRQ 147 >gi|328876996|gb|EGG25359.1| hypothetical protein DFA_03608 [Dictyostelium fasciculatum] Length = 1145 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + LI G+E G+ P + +T+ + G+I +LNVS +AA+ L Sbjct: 432 TKPLLLIFGSESHGINPGIAKLSTATLTIPGTGLIDSLNVSQSAAIILAECWR 484 >gi|241668936|ref|ZP_04756514.1| RNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877468|ref|ZP_05250178.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843489|gb|EET21903.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 155 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 3/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + L P N G I+R + E L ++ H Sbjct: 1 MINIALYEPEIPPNTGNIIRLCANVGAKLHLIEPLGFKLEDKQLRRAGLDY--HEFADLK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 + + ++ +K+ Q N L+ G E +GL + Sbjct: 59 IYKNFDEFYQKNKQNKIWACTTKAKQYYHQVNFNYDDILLFGPETRGLPIDVLKLLEKTQ 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SN+ AV LY N+ Sbjct: 119 LKIPMHKNSRSLNLSNSVAVILYGALNNI 147 >gi|317132499|ref|YP_004091813.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense YUAN-3] gi|315470478|gb|ADU27082.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense YUAN-3] Length = 169 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 1/95 (1%) Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + + I+ + + SS + + L+ G E GL + Sbjct: 51 YWHLLNITYYENLADFLRRAPGPCFFFSSKAPRSYTDVHYPPDACLVFGKETAGLPEELL 110 Query: 246 -ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 S L + + LN+SNA AV Y Sbjct: 111 LAHEDSAVRLPIRAEARCLNLSNAVAVGAYEALRQ 145 >gi|86152124|ref|ZP_01070336.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 260.94] gi|315124400|ref|YP_004066404.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840909|gb|EAQ58159.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 260.94] gi|315018122|gb|ADT66215.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 155 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G+I R I + ++ + + I Sbjct: 1 MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAVRRAGLDYWDKLEPIIW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 NL + L + + + ++ S+K L G+E GL + + Sbjct: 61 ENLEEFLNENMIYKNRFFFATTKSQKAYFDAKFQKNDFLFFGSESYGLPVELMQLNWENA 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ + + Y Sbjct: 121 ITIPMKSYGRSLNLATSVGIISYEALRQ 148 >gi|212212123|ref|YP_002303059.1| 23S rRNA methyltransferase [Coxiella burnetii CbuG_Q212] gi|212010533|gb|ACJ17914.1| 23S rRNA methyltransferase [Coxiella burnetii CbuG_Q212] Length = 152 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 41/149 (27%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L P N G I+R + + L ++ I Sbjct: 1 MFHIALFEPEIPPNTGNIIRLCANAGASLHLIHPLGFSLDGKRLQRAGLDY--REWATII 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 K + ++ K + G E +GL + + + Sbjct: 59 HYDHFEAFKSAFAEHRIFACTTKGKTIYADVHYRSSDVFLFGPETRGLPAEIRTQFPDSQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++N++N ++ LY Sbjct: 119 QIRIPMVTEKRSINLANTVSIILYEAWRQ 147 >gi|285019836|ref|YP_003377547.1| tRNA/rrna methyltransferase , spou class protein [Xanthomonas albilineans GPE PC73] gi|283475054|emb|CBA17553.1| putative trna/rrna methyltransferase , spou class protein [Xanthomonas albilineans] Length = 159 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 232 ILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + G E +GL P+ E L M ++LN+SNA AV ++ Sbjct: 103 LFGPETRGLPPEVLEAIPPAQRLRLPMRPDNRSLNLSNAVAVVVFEAWRQL 153 >gi|281425955|ref|ZP_06256868.1| RNA methylase, SpoU family [Prevotella oris F0302] gi|299142398|ref|ZP_07035530.1| RNA methylase, SpoU family [Prevotella oris C735] gi|281399848|gb|EFB30679.1| RNA methylase, SpoU family [Prevotella oris F0302] gi|298576120|gb|EFI47994.1| RNA methylase, SpoU family [Prevotella oris C735] Length = 179 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 24/49 (48%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A+I+G E KG++ + + + + G +LNVS A + ++ Sbjct: 127 AVIMGNEVKGVKQQVIDMSDGCLEIPQFGTKHSLNVSTTAGIVMWEFVR 175 >gi|29830900|ref|NP_825534.1| rRNA methyltransferase [Streptomyces avermitilis MA-4680] gi|29608013|dbj|BAC72069.1| putative rRNA methyltransferase [Streptomyces avermitilis MA-4680] Length = 249 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 73/238 (30%), Gaps = 10/238 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD----WDANLPHPFPVKTVP 97 H ++ L G H + A+ +R + + A L D + VP Sbjct: 9 HRLADGSVLLDGFHALKHAVRFQARVPVAVTTDRRAALALADELAPDVRETLDALLAEVP 68 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 +T+ +V + AL P + L+A+ + + +++P N+G Sbjct: 69 EETLKALVPRPHPTAVAALAVRPSRAANLEALARTPRSAPVVVLDNPRNLGNAGAVIRLA 128 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + G + GA H + + Sbjct: 129 AGFGATGVVTTGTLDPWHPTVVRGGAGLHFATAVER------LTVDELPPGPVFALDPEG 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + D L G+E GL + + + L M + + N++ + A+ L+ Sbjct: 183 DDIRGLKLPDDAVLAFGSERTGLSAELRARTDHLVALPMRPQVSSYNLATSVAMTLFH 240 >gi|296185702|ref|ZP_06854111.1| putative RNA methyltransferase, TrmH family, group 2 [Clostridium carboxidivorans P7] gi|296049830|gb|EFG89255.1| putative RNA methyltransferase, TrmH family, group 2 [Clostridium carboxidivorans P7] Length = 155 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 6/151 (3%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ V +C + + L ++ +++ Sbjct: 1 MNLNIVLFQPEIPQNTGNIARTCVLTNCKLHLIKPLGFSLDEKHLKRAGLDYWKYLDLEV 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-- 249 + + +K F + + ++ G E GL +E + Sbjct: 61 YESYEELREKYKDSTFYFSTTHG--DNFYHEVEFKEGDFIVFGRESCGLPDSVRE-SDPK 117 Query: 250 SMAHLHMPGII-KALNVSNAAAVALYITQNH 279 + M ++LN+SN A+ Y Sbjct: 118 RCIRVPMINTTTRSLNLSNTVAIVAYEALRQ 148 >gi|227830363|ref|YP_002832143.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus L.S.2.15] gi|229579181|ref|YP_002837579.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus Y.G.57.14] gi|229582067|ref|YP_002840466.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus Y.N.15.51] gi|284997869|ref|YP_003419636.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus L.D.8.5] gi|227456811|gb|ACP35498.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus L.S.2.15] gi|228009895|gb|ACP45657.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus Y.G.57.14] gi|228012783|gb|ACP48544.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus Y.N.15.51] gi|284445764|gb|ADB87266.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus L.D.8.5] Length = 237 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 23/54 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 K+AL+ G E GL + + ++ LN+S+A + LY + Sbjct: 102 KKVALVFGRESVGLTREEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNR 155 >gi|302348245|ref|YP_003815883.1| rRNA methylase [Acidilobus saccharovorans 345-15] gi|302328657|gb|ADL18852.1| rRNA methylase [Acidilobus saccharovorans 345-15] Length = 245 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 23/54 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +AL++G E GL + + ALNVSNA AV LY K Sbjct: 108 VALVVGRESVGLTRDELAQCDLLCTIPASPKYTALNVSNATAVLLYEIYKARRK 161 >gi|262183803|ref|ZP_06043224.1| putative rRNA methylase, SpoU class [Corynebacterium aurimucosum ATCC 700975] Length = 156 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 4/149 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +V D+ P N G +R+A + E L ++ H Sbjct: 4 LHIVFDNPVIPTNTGNAIRTAAVTGASLHLIEPLGFNFEDKHLKRAGLDY--HDLADLKI 61 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK--TQETATSM 251 + + ++ ++K + L+ G E GL + T Sbjct: 62 HKDFDACMEALPDARVFAFTTHTEKWFTDVEYQEGDVLLFGTEPTGLPEEHAFHPRVTER 121 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SNAA+ A+Y Sbjct: 122 VRIPMMPARRSMNLSNAASTAVYEAWRQL 150 >gi|147771037|emb|CAN62490.1| hypothetical protein VITISV_035537 [Vitis vinifera] Length = 205 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 7/71 (9%) Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATS------MAHLHMPGI-IKALNVSNAAA 270 LI G+E GL P+ S + M ++ LN+S + Sbjct: 110 NIHSDFSYRKGDWLIFGSETCGLPPEALLDCKSEALGGGTIQIPMVETYVRCLNLSVSVG 169 Query: 271 VALYITQNHFA 281 +ALY Sbjct: 170 IALYEASRQLN 180 >gi|332671651|ref|YP_004454659.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484] gi|332340689|gb|AEE47272.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484] Length = 173 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 2/147 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 QL++ N+G +LR+ A + R A+ + + Sbjct: 23 HSCWDQLVVAPLWPLHGVNLGTLLRTCDAVGA--CLAVPRLPWVPEALERGNTLRHPACV 80 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + Q+ + L+ +S + + + ++LG E G+ P+ + Sbjct: 81 HWTGNRVRWLERQRDRGSTVVGVELAEESVRLGDLPAARRRTVVVLGHEQTGIPPEALDL 140 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G +LNV+ A ++ LY Sbjct: 141 LDVTVEIPMVGTGASLNVAVAGSLVLY 167 >gi|322831757|ref|YP_004211784.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602] gi|321166958|gb|ADW72657.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602] Length = 245 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 25/71 (35%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + + + + +AL+ G E GL + + + +LN++ Sbjct: 87 PWPMLEPRECGEHSAKAAQTAPVALVFGRERVGLTNEELQKCNYHVCIPANPEYSSLNLA 146 Query: 267 NAAAVALYITQ 277 A + Y + Sbjct: 147 MAVQIIAYEVR 157 >gi|218131716|ref|ZP_03460520.1| hypothetical protein BACEGG_03337 [Bacteroides eggerthii DSM 20697] gi|217986019|gb|EEC52358.1| hypothetical protein BACEGG_03337 [Bacteroides eggerthii DSM 20697] Length = 176 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 3/160 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L +VLD++ HNIG++ R++ AF + I + + K+A GA Sbjct: 17 EFKEAEKLPLTVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 76 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 + + ++N +A+ + + G+ + + E K+ K +++G E KG++ Sbjct: 77 FTVDWKYVNNTVEAVDNLKNEGYTVYSVEQAEGSIMLNELTLDKSRKYTIVMGNEVKGVQ 136 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + + + G +LNVS A + ++ N Sbjct: 137 QEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFNKLK 176 >gi|219856334|ref|YP_002473456.1| hypothetical protein CKR_2991 [Clostridium kluyveri NBRC 12016] gi|219570058|dbj|BAH08042.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 157 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P N G I R+ V + + L ++ +++ Sbjct: 5 LNIVLFEPEIPQNTGNIARTCVLTGSRLHLIKPLGFSLDEKHLRRAGLDYWKYLDLTLYD 64 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252 + ++ + F K + D+ ++ G E GL K ++ Sbjct: 65 CYEELRERYKNGTFYFSTTHG--KNFYQHAKFKDEDFIVFGKESCGLPDKIRDSNPEKNI 122 Query: 253 HLHMPGII-KALNVSNAAAVALYITQNHF 280 L M ++LN+SNA A+ +Y Sbjct: 123 RLPMIKTTTRSLNLSNAVAIVVYEALRQL 151 >gi|268316849|ref|YP_003290568.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252] gi|262334383|gb|ACY48180.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252] Length = 200 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 2/169 (1%) Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 E TL + +++VLD++ +N+G+I R++ A + + T E Sbjct: 7 HEIPRPDPETLRRLPRHPIVVVLDNIRSIYNVGSIFRTSDAARIEKLYLTGITGTPEHRQ 66 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALIL 233 L K+A GA E +P+ + + + + G+ L ++ +D +ALI+ Sbjct: 67 LHKTALGAEETVPWEYVRDPVPLVASLRKAGYTIAALELTDTPTYTHQLPDDIFPLALIV 126 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G E G++P E A + G ++LNV+ A +A++ H+ + Sbjct: 127 GHELYGVQPALIERADLALEIPQFGSKQSLNVAVAYGIAVFDLVRHYRR 175 >gi|28198735|ref|NP_779049.1| tRNA/rRNA methylase [Xylella fastidiosa Temecula1] gi|28056826|gb|AAO28698.1| tRNA/rRNA methylase [Xylella fastidiosa Temecula1] gi|307579878|gb|ADN63847.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa subsp. fastidiosa GB514] Length = 153 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++L P N G ++R + + L ++ E+ NL Sbjct: 6 VLLYQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLDDRQLKRAGLDYHEYARMQVHPNL 65 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253 + AL + + + A I G E +GL T + + Sbjct: 66 SSALAAIAPRRLFALSTRGQVRYDTPT--FRTGDAFIFGPETRGLPDTVLHTIPESQRLY 123 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 124 LPMQPQSRSLNLSNAVAVMVFEAWRQ 149 >gi|71275853|ref|ZP_00652137.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Dixon] gi|71897938|ref|ZP_00680143.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1] gi|71899349|ref|ZP_00681509.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1] gi|170730164|ref|YP_001775597.1| tRNA/rRNA methylase [Xylella fastidiosa M12] gi|182681428|ref|YP_001829588.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa M23] gi|71163431|gb|EAO13149.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Dixon] gi|71730863|gb|EAO32934.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1] gi|71732182|gb|EAO34237.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1] gi|167964957|gb|ACA11967.1| tRNA/rRNA methylase [Xylella fastidiosa M12] gi|182631538|gb|ACB92314.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa M23] Length = 155 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++L P N G ++R + + L ++ E+ NL Sbjct: 8 VLLYQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLDDRQLKRAGLDYHEYARMQVHPNL 67 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253 + AL + + + A I G E +GL T + + Sbjct: 68 SSALAAIAPRRLFALSTRGQVRYDTPT--FRTGDAFIFGPETRGLPDTVLHTIPESQRLY 125 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 126 LPMQPQSRSLNLSNAVAVMVFEAWRQ 151 >gi|332023938|gb|EGI64156.1| Putative methyltransferase TARBP1 [Acromyrmex echinatior] Length = 828 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 55/197 (27%), Gaps = 4/197 (2%) Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVH--QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 L + + I K + G E D L++V V+ Sbjct: 628 LENNVEIYMEGLNDIQKKIDPSKPIGLCGDTFEVINEFMFLQDTQLQQGLIVVASFVDRS 687 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL--QKM 202 N+G I R+ F ++ + S S + Sbjct: 688 PNLGGIARTCEIFGVKALVVANADCVKDKEFQYLSVSADKWLNILQVKPYELQKFLLDRK 747 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 ++ + + L + L+LG E G+ + G+ ++ Sbjct: 748 NTGWSLIGVEQTVNSTNLMTTTFEKRTILVLGNEKDGIPANFIPLFDKCVEIPQVGVTRS 807 Query: 263 LNVSNAAAVALYITQNH 279 LNV AA+ ++ N Sbjct: 808 LNVHVTAAICIWQYANQ 824 >gi|227329515|ref|ZP_03833539.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 241 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + QE ++ +AL+ G E GL + + + +LN++ Sbjct: 87 PWPMLEPRECGIRSAQEAEHAPVALVFGRERVGLTNEELQKCHYHVAIPANPEYSSLNLA 146 Query: 267 NAAAVALYITQ 277 A + Y + Sbjct: 147 MAVQIIAYEVR 157 >gi|210623503|ref|ZP_03293848.1| hypothetical protein CLOHIR_01798 [Clostridium hiranonis DSM 13275] gi|210153561|gb|EEA84567.1| hypothetical protein CLOHIR_01798 [Clostridium hiranonis DSM 13275] Length = 156 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 45/148 (30%), Gaps = 5/148 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL PHN G I+R+ + L + Sbjct: 5 IVLVEPEIPHNTGNIIRTCAVTGAKLHLVKPLGFELTDKHLKRCGLDYW--DIADVKIYE 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254 + Q + +S K+ D L+ G+E KGL + E A + Sbjct: 63 NFEELEAQYPDAQYVLGTSKVKRTHTDVEYKDGCFLVFGSETKGLSKEIIERHIEDCARI 122 Query: 255 HMP--GIIKALNVSNAAAVALYITQNHF 280 M + LN+SNA AV Y Sbjct: 123 PMLDLERARCLNLSNAVAVMTYEALRQL 150 >gi|164687676|ref|ZP_02211704.1| hypothetical protein CLOBAR_01318 [Clostridium bartlettii DSM 16795] gi|164603450|gb|EDQ96915.1| hypothetical protein CLOBAR_01318 [Clostridium bartlettii DSM 16795] Length = 156 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 5/152 (3%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I+R+ + E L + + Sbjct: 1 MSINVVLVEPEIPQNTGNIIRTCANTGAILHLIRPLGFSLEDKYLKRCGLDYWDISEIRY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATS 250 + + +K + ++ + D L+ G E KGL P + + Sbjct: 61 YDSFEELQEKYPDAKYFYSTTKANKAHSDME--FEDGCFLVFGKETKGLPKPLIEANMET 118 Query: 251 MAHLHMPG--IIKALNVSNAAAVALYITQNHF 280 + M ++LN+SN+ A+ +Y Sbjct: 119 CMRIPMLKLEKARSLNLSNSVAIVVYEAMRQI 150 >gi|111224586|ref|YP_715380.1| putative 23S rRNA methylase [Frankia alni ACN14a] gi|111152118|emb|CAJ63846.1| putative 23S RRNA methylase [Frankia alni ACN14a] Length = 283 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 87/218 (39%), Gaps = 8/218 (3%) Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 + ++ +A R D PV+ V + + + A L L Sbjct: 53 LLEVFVGVSAAGRH-EDLLRAAAVPVRLVTDEAAAALSETVTPQ--GLVAVAALPGHRLA 109 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + +L+ V NDP N G ++RSA A D ++ T +S++G+ H+ Sbjct: 110 DLAAPRLVAVCVGANDPGNAGTVIRSADAAGADAVVFTGGGVDPFGGKCVRSSAGSHFHL 169 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPK 243 P I T+ + + + G + + S +++ L+ + A + G E GL P Sbjct: 170 PVIVEPTFTEVVTGLRARGCRIVATSGSARRDLDTAVDAGELDGPTAWLFGNEAHGLDPA 229 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HF 280 A + + + G ++LN++ A+A+ LY + Sbjct: 230 GLAAADAALRVPVYGQAESLNLAVASALCLYASARAQR 267 >gi|310658411|ref|YP_003936132.1| rRNA methylase [Clostridium sticklandii DSM 519] gi|308825189|emb|CBH21227.1| putative rRNA methylase [Clostridium sticklandii] Length = 151 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 5/147 (3%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +L P N G I+R+ + + + L ++ + + Sbjct: 1 MLVEPEIPQNTGNIIRTCACINARLHLIKPMGFSMDEKQLKRAGLDYM--DLVSINYYDS 58 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLH 255 + ++ +KK + D+ ++ G E KGL + + + Sbjct: 59 FEELIEDKDINKFYFFTTKAKKNHTEATYEDESYIVFGKETKGLSQEILSLNPNNNVRIP 118 Query: 256 MPGI--IKALNVSNAAAVALYITQNHF 280 M + +++LN+SN+ A+A Y Sbjct: 119 MLNMDRVRSLNLSNSVAIAAYEAIRQI 145 >gi|296130835|ref|YP_003638085.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] gi|296022650|gb|ADG75886.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] Length = 153 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 2/98 (2%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 H + + + A + ++ + D L+ G E GL Sbjct: 50 YHDLAHVVVHASLAALLDALPASRVWAFTTRATDRYTDVAWRDDDVLLFGPEPTGLPADV 109 Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T + M +++N+SNAAAVA Y Sbjct: 110 LAHPRVTGEVRIPMLPGRRSMNLSNAAAVATYEAWRAR 147 >gi|300721214|ref|YP_003710484.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297627701|emb|CBJ88227.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] Length = 167 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 10/158 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R C + + L ++ E + Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQH 60 Query: 193 SNLTDA--------LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + G + L++ D L+ G E +GL Sbjct: 61 HDYNAFLESEGLSSVNSQSHSGARLFALTTKGTPAHSNVSYRDGDYLMFGPETRGLPSYV 120 Query: 245 QETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M +++N+SN AV ++ Sbjct: 121 LDNMPPEQKIRIPMLSDSRSMNLSNTVAVVVFEAWRQL 158 >gi|326389368|ref|ZP_08210936.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus JW 200] gi|325994731|gb|EGD53155.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus JW 200] Length = 156 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 3/65 (4%) Query: 219 PLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMPG--IIKALNVSNAAAVALYI 275 + D ++ G E GL ++ + M ++LN+SN+ A+ LY Sbjct: 86 YYHEVKYEDNSYILFGKETAGLPKWLIEKYYEDCIRIPMHEVISTRSLNLSNSVAIVLYE 145 Query: 276 TQNHF 280 Sbjct: 146 ALRQL 150 >gi|160946403|ref|ZP_02093612.1| hypothetical protein PEPMIC_00363 [Parvimonas micra ATCC 33270] gi|158447519|gb|EDP24514.1| hypothetical protein PEPMIC_00363 [Parvimonas micra ATCC 33270] Length = 98 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 28/52 (53%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K +++G E G+ + + + + + M +++LNVS AAA+ +Y Sbjct: 42 FTFDGKNIVVMGNEANGISAEMLKISNNHLKIDMDNSMESLNVSIAAAIIMY 93 >gi|109897560|ref|YP_660815.1| RNA methyltransferase [Pseudoalteromonas atlantica T6c] gi|109699841|gb|ABG39761.1| RNA methyltransferase, TrmH family, group 1 [Pseudoalteromonas atlantica T6c] Length = 241 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 25/70 (35%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + L E+ +AL+ G E GL + + + +LN++ Sbjct: 88 WPMLEPRECGEKLVSEVPKYPVALVFGRENNGLSNEELQQCHFHVCIPANPEYSSLNLAA 147 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 148 AVQTLCYEIR 157 >gi|332667598|ref|YP_004450386.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM 1100] gi|332336412|gb|AEE53513.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM 1100] Length = 178 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 63/156 (40%), Gaps = 3/156 (1%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + L+++LD+V N+G+ R+A F+ I + + K+A GA Sbjct: 17 NDYKTQEKTPLILILDNVRSALNVGSAFRTADGFALTKIYLCGITAQPPHKEILKTAIGA 76 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGL 240 E + + + + A+Q + + G+Q + + ++ +A++ G E G+ Sbjct: 77 TESVDWEYVEDPCAAVQALQAAGWQVLAVEQAENSTSLEQYTPPPNAKLAVVFGNEVSGV 136 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + + G +LN++ + ++ Sbjct: 137 SDEVMDIVDGALEIPQYGTKHSLNIAVCVGIVVWEL 172 >gi|307267049|ref|ZP_07548563.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii Rt8.B1] gi|306917929|gb|EFN48189.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii Rt8.B1] Length = 156 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 3/65 (4%) Query: 219 PLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMPG--IIKALNVSNAAAVALYI 275 + D ++ G E GL ++ + M ++LN+SN+ A+ LY Sbjct: 86 YYHEVKYEDNSYILFGKETAGLPKWLIEKYYEDCIRIPMHEVISTRSLNLSNSVAIVLYE 145 Query: 276 TQNHF 280 Sbjct: 146 ALRQL 150 >gi|29654808|ref|NP_820500.1| RNA methyltransferase [Coxiella burnetii RSA 493] gi|153208685|ref|ZP_01946932.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii 'MSU Goat Q177'] gi|161830683|ref|YP_001597358.1| RNA methyltransferase [Coxiella burnetii RSA 331] gi|165919332|ref|ZP_02219418.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii RSA 334] gi|212219235|ref|YP_002306022.1| 23S rRNA methyltransferase [Coxiella burnetii CbuK_Q154] gi|29542076|gb|AAO91014.1| 23S rRNA methyltransferase [Coxiella burnetii RSA 493] gi|120575796|gb|EAX32420.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii 'MSU Goat Q177'] gi|161762550|gb|ABX78192.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii RSA 331] gi|165916992|gb|EDR35596.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii RSA 334] gi|212013497|gb|ACJ20877.1| 23S rRNA methyltransferase [Coxiella burnetii CbuK_Q154] Length = 152 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 41/149 (27%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L P N G I+R + + L ++ I Sbjct: 1 MFHIALFEPEIPPNTGNIIRLCANAGASLHLIHPLGFSLDEKRLQRAGLDY--REWATII 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 K + ++ K + G E +GL + + + Sbjct: 59 HYDHFEAFKSAFAEHRIFACTTKGKTIYADVHYRSSDVFLFGPETRGLPAEIRTQFPDSQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++N++N ++ LY Sbjct: 119 QIRIPMVTEKRSINLANTVSIILYEAWRQ 147 >gi|298712565|emb|CBJ33268.1| conserved unknown protein [Ectocarpus siliculosus] Length = 569 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +AL+LG E G+ + + + + G+ +LNV++A V LY ++ Sbjct: 507 VALVLGNEVTGVDERVLGLCDLVVEVPVFGLKNSLNVASAGTVVLYEVLRQWS 559 >gi|255017825|ref|ZP_05289951.1| hypothetical protein LmonF_08965 [Listeria monocytogenes FSL F2-515] Length = 81 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 226 NDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 N + G E GL E + + M I++LN+SN AA+ Y Sbjct: 8 NKDYFFVFGKETTGLPDALLQENEENCLRIPMTDHIRSLNLSNTAAILAYEALRQQN 64 >gi|313682116|ref|YP_004059854.1| tRNA/rRNA methyltransferase (spou) [Sulfuricurvum kujiense DSM 16994] gi|313154976|gb|ADR33654.1| tRNA/rRNA methyltransferase (SpoU) [Sulfuricurvum kujiense DSM 16994] Length = 156 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 33/97 (34%), Gaps = 1/97 (1%) Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 H + + + H + ++ + P + + L G+E G+ + Sbjct: 51 YWHKIDLHVWESIEEFMDAHPIKERFFFATTKTDIPYFEHEFQEGDYLFFGSETAGIPSE 110 Query: 244 TQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E + M ++LN++ ++ + LY Sbjct: 111 ILEAYPKQTMTIPMTKEGRSLNLAISSGIILYEAIKQ 147 >gi|312143853|ref|YP_003995299.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium sp. 'sapolanicus'] gi|311904504|gb|ADQ14945.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium sp. 'sapolanicus'] Length = 168 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 9/96 (9%), Positives = 28/96 (29%), Gaps = 1/96 (1%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + + ++ + + + G E GL Sbjct: 50 YWHKLDINYYDSLDEFFKKNKDGRFFYATTKAANSYHELDYQADDYFLFGKETAGLPETL 109 Query: 245 QE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M +++LN++N+ ++ +Y Sbjct: 110 LKDNLEYCIRIPMKDSLRSLNLANSVSIIIYEALRQ 145 >gi|281206723|gb|EFA80908.1| hypothetical protein PPL_06143 [Polysphondylium pallidum PN500] Length = 520 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 56/236 (23%), Positives = 87/236 (36%), Gaps = 21/236 (8%) Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLALETA 119 + F + K + L V+ V Q +D VHQGL L+ + Sbjct: 280 KTTKKNKFNINRDKKNIGALVDILKKCEQLEVEIVPVDKQRLDVFSKF-RVHQGLVLDCS 338 Query: 120 P-----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 P +A L++ LD + DP N GAI+R+ F DG+I T + Sbjct: 339 PLTITTLTGLSVPDMTEFEADNRYPLIIALDELWDPQNTGAIVRTCHYFGLDGVIVTDKG 398 Query: 169 SPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 S S +KS+SGA+E P + + K W +S K + + Sbjct: 399 SIPVSPFASKSSSGAIEEFPIFKCLSLASFLQASKARGWHIIGTSVSDPESKDITNVKID 458 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHM-----PGIIKALNVSNAAAVALYITQ 277 L++G EG GL+ K M + I +LN S + ++ Q Sbjct: 459 KPTVLVIGNEGYGLKDKVVSHCNEMIMIKGLQRSSNEKIDSLNASVTTGILIHHLQ 514 >gi|300786824|ref|YP_003767115.1| RNA methyltransferase CspR [Amycolatopsis mediterranei U32] gi|299796338|gb|ADJ46713.1| RNA methyltransferase CspR [Amycolatopsis mediterranei U32] Length = 155 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E GL QE T L M ++LN++N AA+ +Y Sbjct: 91 YTPGDVLMFGPESVGLPAAVQEAPEVTDRVRLPMLPTSRSLNLANTAAITVYEAWRQ 147 >gi|227112706|ref|ZP_03826362.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 241 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + QE ++ +AL+ G E GL + + + +LN++ Sbjct: 87 PWPMLEPRECGVRSAQEAEHAPVALVFGRERVGLTNEELQKCHYHVAIPANPEYSSLNLA 146 Query: 267 NAAAVALYITQ 277 A + Y + Sbjct: 147 MAVQIIAYEVR 157 >gi|150024500|ref|YP_001295326.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149771041|emb|CAL42508.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 182 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 3/155 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + +++VLD + HNIG++ R+A AF + I + + + K+A GA Sbjct: 16 DFKEAEKTPIVIVLDDIRSLHNIGSVFRTADAFLIEKIYLCGITATPPNKEIHKTALGAT 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLR 241 E + + N+ + ++ + + + K K ALI G E G+ Sbjct: 76 ETVVWEHHENVLEVIENLKKDEISVFAIEQVENAIFLNDFKVEATKKYALIFGNEVFGVN 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + G +LN+S + + ++ Sbjct: 136 QEAIRLCDGTIEIPQLGTKHSLNISVSTGIVVWDL 170 >gi|116494421|ref|YP_806155.1| rRNA methylase (SpoU class) [Lactobacillus casei ATCC 334] gi|116104571|gb|ABJ69713.1| Predicted rRNA methylase (SpoU class) [Lactobacillus casei ATCC 334] Length = 169 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + + ++ L ++ + + I Sbjct: 1 MANHIVLFEPLIPANTGNIARTCAATNSYLHLIKPLGFETDDKHLRRAGLDYWQRVRIIY 60 Query: 192 ISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248 +L D + + + + + + + + G E GL ++ A Sbjct: 61 HDSLDDFMATVKEPQYLYLITKFADQTYSDRDYADIDQDHYFLFGKETTGLPEGFMRDHA 120 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++ALN+SN AA+ +Y Sbjct: 121 DQCLRIPMTDNVRALNLSNCAALVIYEALRQ 151 >gi|294084744|ref|YP_003551502.1| TrmH family RNA methyltransferase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664317|gb|ADE39418.1| RNA methyltransferase, TrmH family, group 2 [Candidatus Puniceispirillum marinum IMCC1322] Length = 163 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 44/148 (29%), Gaps = 4/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++L P N G I+R + + ++ E + NL Sbjct: 4 IILFTPQIPPNTGNIIRLCANTGARLHLVKPLGFSLDEKSCRRAGLDYHEMARVQQHDNL 63 Query: 196 TDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251 L M + ++ + + + GAE GL Sbjct: 64 DACLDVLGMSINTQRLFAITKFGTQIVHDTTFVAGDVFLFGAETTGLPDSIHAALGDHQK 123 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA +V LY Sbjct: 124 LSLPMLPANRSLNLSNAVSVTLYEAWRQ 151 >gi|304438915|ref|ZP_07398838.1| TrmH family RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372581|gb|EFM26164.1| TrmH family RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 155 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 46/152 (30%), Gaps = 4/152 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL N GAI RS + + L ++ + + Sbjct: 1 MSLNIVLYEPEIHWNTGAIARSCGLTHTRLHLIEPFGFEIDDKHLKRAGLDYWDLVDINI 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 N+ + K F + D+ ++ G E +GL Sbjct: 61 YKNVEELYAKYPEGRFFMATTKAKKLYTE--VEFQDEDFIMFGPETRGLPEDMIFGNYDM 118 Query: 251 MAHLHMPGII-KALNVSNAAAVALYITQNHFA 281 + M ++LN++N+A + L+ Sbjct: 119 AIKIPMLKDFGRSLNLANSANIILFEALRQLN 150 >gi|332285809|ref|YP_004417720.1| RNA methyltransferase [Pusillimonas sp. T7-7] gi|330429762|gb|AEC21096.1| RNA methyltransferase [Pusillimonas sp. T7-7] Length = 166 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 50/159 (31%), Gaps = 2/159 (1%) Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182 P +VL P N G ++R A + + L ++ Sbjct: 1 MPAEPFSSPFMFHIVLVSPEIPPNTGNVIRLAANTGASLHLVRPLGFELDDKKLKRAGLD 60 Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242 E ++L AL + + L++ + + + + G E GL P Sbjct: 61 YHEWAAMQVHNDLDAALNIIGGDPSRRYALTTKGSRLMAEFSFKPGDVFVFGRETAGLSP 120 Query: 243 KTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SNA AV ++ Sbjct: 121 GQLACFPQAQRLRLPMMPQQRSLNLSNAVAVTVFEAWRQ 159 >gi|330931647|ref|XP_003303484.1| hypothetical protein PTT_15708 [Pyrenophora teres f. teres 0-1] gi|311320500|gb|EFQ88423.1| hypothetical protein PTT_15708 [Pyrenophora teres f. teres 0-1] Length = 657 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 45/298 (15%), Positives = 84/298 (28%), Gaps = 67/298 (22%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI--- 104 + F+YG +V AA+ RK ++L + + + + + D+ Sbjct: 345 SEFIYGTRSVLAAIKANRRKFYKLYIHARGMENSQAILSTIRSLKLFHIAVEVGDEYMQA 404 Query: 105 ---VGKEAVHQGLALETAPLLSPTLDAVR------------------------------- 130 H GL LE +P + +R Sbjct: 405 MDKASNGRPHNGLILEASPPPILPITQLRAASIEEGAFNLSLDRQSAEEEAINGKQELYE 464 Query: 131 ------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---------- 174 L++ +D V D N+GAI RSA D IIT ++ S Sbjct: 465 YKSDGWRHPLILYIDGVVDEGNLGAIARSAYVLGVDAIITPTHHTAEWSPIAIKASSGAA 524 Query: 175 ---------VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + + I S+ ++ + + Sbjct: 525 EAIPLFRVKEPEQFLHSSSQVGWRIYASDAVPLSKQDGRQVVYAVAKKYSPLPAYHSPLA 584 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPG-----IIKALNVSNAAAVALYITQN 278 L++G+E G++ + A + + + NVS A + Y Sbjct: 585 EHPTILMMGSEHSGVKKHLAKMAHYKVGIPHGRSVDEVGVDSFNVSVATGILCYQMMQ 642 >gi|283956249|ref|ZP_06373729.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 1336] gi|283791969|gb|EFC30758.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 1336] Length = 155 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G+I R I + ++ + + I Sbjct: 1 MFNIVLIHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAVRRAGLDYWDKLEPIIW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 NL + L + + + ++ S+K L G+E GL + + Sbjct: 61 ENLEEFLNENIIYKNRFFFATTKSQKAYFDAEFQKNDFLFFGSESYGLPMELMQLNWENA 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ + + Y Sbjct: 121 ITIPMKSYGRSLNLATSVGIISYEALRQ 148 >gi|239908534|ref|YP_002955276.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio magneticus RS-1] gi|239798401|dbj|BAH77390.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio magneticus RS-1] Length = 237 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +AL+LG+E +G+RP ++ ++ + I +LNV+ A A+ + Sbjct: 173 HLAKPPFPLALVLGSEEEGIRPGIRKRCDALWRIPQARPIDSLNVAQAGAIMM 225 >gi|215405386|ref|ZP_03417567.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 02_1987] gi|215413262|ref|ZP_03421953.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 94_M4241A] gi|215447687|ref|ZP_03434439.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T85] gi|289747187|ref|ZP_06506565.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 02_1987] gi|294995866|ref|ZP_06801557.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 210] gi|298526847|ref|ZP_07014256.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 94_M4241A] gi|289687715|gb|EFD55203.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 02_1987] gi|298496641|gb|EFI31935.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 94_M4241A] gi|326905207|gb|EGE52140.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis W-148] Length = 154 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+ G E GL T T + M ++LN+SNAAAVA+Y Sbjct: 91 YHAGDVLMFGPEPTGLDEATLADTHITGQVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 147 >gi|333025681|ref|ZP_08453745.1| putative rRNA methylase [Streptomyces sp. Tu6071] gi|332745533|gb|EGJ75974.1| putative rRNA methylase [Streptomyces sp. Tu6071] Length = 266 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 72/229 (31%), Gaps = 11/229 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVG 106 + L G H + AL + + + A+ L + L VP Sbjct: 39 VLLDGFHALKHALRFGADVPLAVAEDRAAVLALADELAPDLAPRLAELLVPVPPALYRSL 98 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 H A A + L+VLD + N GA++R A F G++TT Sbjct: 99 VPRPHPTGVAALAGRPPEPGFAGPRTSPLLVLDEPRNLGNAGAVIRLAAGFGASGVVTTG 158 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 P A+ A + + + + L Sbjct: 159 DLDPWHP---------AVVRAGAGLHFATPVARRAVPELPAGPLWAFDAEGEDLRGLRVP 209 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 D L G+E GL +E A + L M + + N++ + +ALY Sbjct: 210 DDALLAFGSERHGLTAAVRERADRLVALPMRPHVSSYNLATSVGMALYH 258 >gi|308163268|gb|EFO65618.1| TAR RNA loop binding protein, putative [Giardia lamblia P15] Length = 209 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K L+LG E +G + + G I++LNV + A+ ++ Sbjct: 144 QDAKLPQKTVLVLGNERRGCPEEILSLCDMTVEIQQLGNIRSLNVHVSCAIFVW 197 >gi|303283642|ref|XP_003061112.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457463|gb|EEH54762.1| predicted protein [Micromonas pusilla CCMP1545] Length = 184 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYITQ 277 A I+G EG GL + ++ G +LNVS AA++ ++ Sbjct: 90 FEGSTAFIMGNEGDGLTDAQKAICDGFVYIRQHGVGTASLNVSVAASIVMHHFA 143 >gi|321461680|gb|EFX72710.1| hypothetical protein DAPPUDRAFT_58639 [Daphnia pulex] Length = 177 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K ALILG E +G+ + + + GII+++NV A+ ++ Sbjct: 111 NHFTFPKKSALILGHEKEGIPVELIQHLDVCVEVPQEGIIRSMNVHVTGAIFIWEYARQ 169 >gi|83647158|ref|YP_435593.1| rRNA methylase [Hahella chejuensis KCTC 2396] gi|83635201|gb|ABC31168.1| rRNA methylase [Hahella chejuensis KCTC 2396] Length = 257 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 21/51 (41%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +A++ G E +GL + H+ +LNV+ AA V Y Sbjct: 108 RGDVAIVFGREERGLTNDELQRCHLHVHIPSNPDYSSLNVAMAAQVICYEL 158 >gi|191637805|ref|YP_001986971.1| Putative rRNA methyltransferase [Lactobacillus casei BL23] gi|227535616|ref|ZP_03965665.1| rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631168|ref|ZP_04674199.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065930|ref|YP_003787953.1| putative rRNA methylase (SpoU class) [Lactobacillus casei str. Zhang] gi|190712107|emb|CAQ66113.1| Putative rRNA methyltransferase [Lactobacillus casei BL23] gi|227186746|gb|EEI66813.1| rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525633|gb|EEQ64634.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438337|gb|ADK18103.1| Predicted rRNA methylase (SpoU class) [Lactobacillus casei str. Zhang] gi|327381871|gb|AEA53347.1| TrmH family RNA methyltransferase [Lactobacillus casei LC2W] gi|327385033|gb|AEA56507.1| TrmH family RNA methyltransferase [Lactobacillus casei BD-II] Length = 169 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 52/151 (34%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + + ++ L ++ + + I Sbjct: 1 MANHIVLFEPLIPANTGNIARTCAATNSYLHLIKPLGFETDDKHLRRAGLDYWQRVRIIY 60 Query: 192 ISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248 +L D + + + + + + + G E GL ++ A Sbjct: 61 HDSLDDFMATVKEPQHLYLITKFADQTYSDRDYADIDQDHYFLFGKETTGLPEGFMRDHA 120 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++ALN+SN AA+ +Y Sbjct: 121 DQCLRIPMTDNVRALNLSNCAALVIYEALRQ 151 >gi|22299659|ref|NP_682906.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus BP-1] gi|22295843|dbj|BAC09668.1| tll2116 [Thermosynechococcus elongatus BP-1] Length = 250 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 21/48 (43%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E +GL E A + + +LN++ A AV Y Sbjct: 111 ALVFGREDRGLTNAELECAHGLVKIPTANTYPSLNLAQAVAVCCYELW 158 >gi|238750361|ref|ZP_04611862.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia rohdei ATCC 43380] gi|238711292|gb|EEQ03509.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia rohdei ATCC 43380] Length = 257 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 20/50 (40%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + + +LN++ A + Y + Sbjct: 108 PVALVFGRERVGLTNEELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVR 157 >gi|87312115|ref|ZP_01094220.1| spoU rRNA Methylase family protein [Blastopirellula marina DSM 3645] gi|87285143|gb|EAQ77072.1| spoU rRNA Methylase family protein [Blastopirellula marina DSM 3645] Length = 168 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 3/155 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + + +VL P N G I R+ VA + L ++ +H+ Sbjct: 1 MKYSPVIHIVLHEPEIPPNTGNIGRTCVAIGAKLWLVKPLGFLVNDRELKRAGMDYWQHL 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + + +++ F + ++ A++LGAE KGL P+ T Sbjct: 61 EWEVVEDWAHLQERLKDRRFFYLTKTAKRSYTTVDFQLE--DAIVLGAESKGLPPELLAT 118 Query: 248 A-TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M +++LN+S AA Y Sbjct: 119 TPENNISVPMRTEVRSLNLSATAATVAYEAVRQLT 153 >gi|325102944|ref|YP_004272598.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145] gi|324971792|gb|ADY50776.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145] Length = 176 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 3/161 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 +++VLD+V HN+G+ R+A F+ D + + + K+A GA Sbjct: 16 EFKNQDKLPIVVVLDNVRSLHNVGSAFRTADGFAVDALYLCGITAQPPHREIEKTALGAT 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP---LEQEIKNDKIALILGAEGKGLR 241 + I + +N+ DA+ + G+Q I + + K+ K AL G E G+ Sbjct: 76 QSIDWQYFANVADAVADLKENGYQIIAIEQAENSISLLDFEPKKDQKFALFFGNEVNGVS 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + + + G + N+ + + L+ + K Sbjct: 136 EEVMKQIDTCIEIPQFGTKHSFNIVISTGIVLWDFFSKLNK 176 >gi|309798502|ref|ZP_07692784.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus infantis SK1302] gi|308117874|gb|EFO55268.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus infantis SK1302] Length = 222 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 48 NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ AL N K++ + + + +++ ++ Sbjct: 15 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 73 Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + AVHQG L + L+ + LL++LD + DPHN+G+ILR+A A + Sbjct: 74 EGAVHQGFVLRVSEFAYTELEQILAQTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 133 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 G+I K + + V+AK+A+GA+EH+P R++NL+ L K+ GF T G + Sbjct: 134 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 193 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQET 247 + K KIALI+G EGKG+ + Sbjct: 194 KWNTK-GKIALIIGNEGKGISSNIKNK 219 >gi|299822392|ref|ZP_07054278.1| RNA methyltransferase [Listeria grayi DSM 20601] gi|299815921|gb|EFI83159.1| RNA methyltransferase [Listeria grayi DSM 20601] Length = 172 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 2/148 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ + ++ +L ++ +++ + +L Sbjct: 8 IVLYQPEIPANTGNISRTCAGTDTFLHLIRPLGFSTDDKMLKRAGLDYWDNVKLVYHDSL 67 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQETATS-MAH 253 L+ I +K I G E GL + + Sbjct: 68 EAFLEASKDGELYFITKFGRHVYSDVSYQDTNKDYYFIFGKETTGLPDELLQQHEETCLR 127 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281 + M I++LN+SN AA+ +Y Sbjct: 128 IPMTDKIRSLNLSNTAALVIYEVLRQQN 155 >gi|305664515|ref|YP_003860802.1| RNA methyltransferase, TrmH family, group 2 [Maribacter sp. HTCC2170] gi|88708532|gb|EAR00768.1| RNA methyltransferase, TrmH family, group 2 [Maribacter sp. HTCC2170] Length = 150 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 4/151 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P+N G I R A+A + + + L ++ HI Sbjct: 1 MPLNIVLFEPEIPNNTGNIGRLALATGSNLHLVKPFGFELDDKRLKRAGLDYWPHISLFT 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250 N+ + ++ + + SS +K D + LI G E GL + + + Sbjct: 61 YENIEEFYKQHNDKNL--VYFSSHGEKNHWSIDYKDDMYLIFGKESVGLPKEILQNNSDK 118 Query: 251 MAHLHMPG-IIKALNVSNAAAVALYITQNHF 280 + + + I++LN++NA V +Y Sbjct: 119 LYKIPLFSSKIRSLNLANAVGVTIYEGLRQL 149 >gi|86150167|ref|ZP_01068394.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597538|ref|ZP_01100772.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 84-25] gi|218562524|ref|YP_002344303.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839283|gb|EAQ56545.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190130|gb|EAQ94105.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 84-25] gi|112360230|emb|CAL35025.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926138|gb|ADC28490.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni IA3902] gi|315927546|gb|EFV06879.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 155 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G+I R I + ++ + + I Sbjct: 1 MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPIVFDISQKAVRRAGLDYWDKLEPIIW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 NL + L + + + ++ S+K L G+E GL + + Sbjct: 61 ENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFGSESYGLPMELMQLNWENA 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ + + Y Sbjct: 121 ITIPMKSYGRSLNLATSVGIISYEALRQ 148 >gi|297543786|ref|YP_003676088.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841561|gb|ADH60077.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 156 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 3/65 (4%) Query: 219 PLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMPG--IIKALNVSNAAAVALYI 275 + D ++ G E GL ++ + M ++LN+SN+ A+ LY Sbjct: 86 YYHEVKYEDNSYILFGKETAGLPKWLIEKYYEDCIRIPMHEVISTRSLNLSNSVAIVLYE 145 Query: 276 TQNHF 280 Sbjct: 146 ALRQL 150 >gi|123966176|ref|YP_001011257.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9515] gi|123200542|gb|ABM72150.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus str. MIT 9515] Length = 160 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 9/70 (12%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---------IIKALNVSNAAAV 271 + L+ G E GL + S+ + MP +++LN+S A + Sbjct: 86 NRFRFLKDDILLFGREDTGLPESVINGSNSLISIFMPNVELSNNDKKGVRSLNLSVACGI 145 Query: 272 ALYITQNHFA 281 A+Y Sbjct: 146 AIYEANKQIN 155 >gi|317507290|ref|ZP_07965033.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974] gi|316254419|gb|EFV13746.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974] Length = 220 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 4/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R +V++++ NIG I+R+A AF + + R + + + H Sbjct: 66 RRHPFHVVIENLAHDANIGTIVRTANAFLAEAVHIVGRRRWNRRGAMVTDRYQHVHHHAT 125 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + A + + + + + AL+ G EG GL P+ + TA Sbjct: 126 AQAFADYAAGRGLAVIAVDNTPGAEPMET----FALPRRCALLFGQEGTGLSPELRGTAQ 181 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 S + G +++NV AA +A++ Sbjct: 182 SALAIAQFGSTRSINVGVAAGIAMHAWVRQ 211 >gi|291300017|ref|YP_003511295.1| tRNA/rRNA methyltransferase SpoU [Stackebrandtia nassauensis DSM 44728] gi|290569237|gb|ADD42202.1| tRNA/rRNA methyltransferase (SpoU) [Stackebrandtia nassauensis DSM 44728] Length = 173 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 19/147 (12%), Positives = 50/147 (34%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + + H + + ++S A+ + + Sbjct: 21 HHHQCWDHLTAAPLWPQHGANLGTLLRSCDAVGACLAVPKWSWVPEALRRGNTLPGKACV 80 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 ++ A ++ + L+ D+ + + + + +LG E +G+ P+ + Sbjct: 81 HWVHDPEGWLAQRRAEGVRVVGVELAEDATRLADVPMARQRTIAVLGHERRGIPPEVLDL 140 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + + M G +LNV+ A ++ LY Sbjct: 141 LDEVVEIPMIGAGASLNVAVAGSLVLY 167 >gi|15897647|ref|NP_342252.1| hypothetical protein SSO0747 [Sulfolobus solfataricus P2] gi|284174973|ref|ZP_06388942.1| hypothetical protein Ssol98_09996 [Sulfolobus solfataricus 98/2] gi|6015729|emb|CAB57556.1| hypothetical protein [Sulfolobus solfataricus P2] gi|13813914|gb|AAK41042.1| Conserved hypothetical protein [Sulfolobus solfataricus P2] gi|261602416|gb|ACX92019.1| tRNA/rRNA methyltransferase (SpoU) [Sulfolobus solfataricus 98/2] Length = 237 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 23/54 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 KIALI G E GL + + ++ LN+S+A + LY + Sbjct: 102 KKIALIFGRESVGLTREEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNR 155 >gi|240169060|ref|ZP_04747719.1| putative tRNA/rRNA methylase [Mycobacterium kansasii ATCC 12478] Length = 154 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E GL T A + M ++LN+SNAAAVA+Y Sbjct: 91 YRAGDVLMFGPEPTGLDAATLADAHITEQVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 147 >gi|187777195|ref|ZP_02993668.1| hypothetical protein CLOSPO_00741 [Clostridium sporogenes ATCC 15579] gi|187774123|gb|EDU37925.1| hypothetical protein CLOSPO_00741 [Clostridium sporogenes ATCC 15579] Length = 160 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 6/149 (4%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P N G I R+ V + + + L ++ +++ Sbjct: 8 LNIVLFQPEIPQNTGNIARTCVLTNSRLHLIKPLGFSLDEKHLRRAGLDYWKYLDLTIYE 67 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SM 251 + + +K F +D ++ G E GL + ++ + Sbjct: 68 SYEELREKYKDSNFYFSTTHG--NNFYTDVKYSDGDFIVFGRESSGLPDEIRD-SDPSKC 124 Query: 252 AHLHMPGII-KALNVSNAAAVALYITQNH 279 + M ++LN+SN A+ Y Sbjct: 125 IRVPMINTTTRSLNLSNTVAIVTYEALRQ 153 >gi|295134598|ref|YP_003585274.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] gi|294982613|gb|ADF53078.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] Length = 168 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 26/53 (49%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++K+ LI G E G+ S+ H+ M G ++NV+ A ++LY Sbjct: 112 SEKVVLIAGHENFGISEDLLRLCDSIVHIPMFGNNSSMNVAQAIGISLYEITK 164 >gi|182414536|ref|YP_001819602.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] gi|177841750|gb|ACB76002.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] Length = 160 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 40/150 (26%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL N G + R + L ++ + Sbjct: 1 MIHVVLFQPEIAPNTGNVGRMCALTRSRLHLIHPLGFVINDRNLRRAGMDYW-RALDVHE 59 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + ++ S + D L+ G EG G Sbjct: 60 HRDWASFRASAVAPRRLWLFTTKSTRCFWDARFEDGDGLVFGNEGSGAPEWLHAEIGDEQ 119 Query: 251 MAHLHM-PGIIKALNVSNAAAVALYITQNH 279 + +++LN+S AA +A Y Sbjct: 120 RVTIPHANPELRSLNLSTAAGIATYEALRQ 149 >gi|90417478|ref|ZP_01225401.1| RNA methyltransferase, TrmH family, group 1 [marine gamma proteobacterium HTCC2207] gi|90330719|gb|EAS45998.1| RNA methyltransferase, TrmH family, group 1 [marine gamma proteobacterium HTCC2207] Length = 248 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 26/71 (36%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + + + E K AL+ G E +GL + H+ +LN++ Sbjct: 92 PWPLLNPRECGEKIYSEAAEHKTALLFGREDRGLTNDELQKCHYHVHIPSNPDYSSLNLA 151 Query: 267 NAAAVALYITQ 277 A V Y + Sbjct: 152 TAVQVLAYEVR 162 >gi|242310580|ref|ZP_04809735.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239522978|gb|EEQ62844.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 158 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 43/151 (28%), Gaps = 2/151 (1%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + +VL P N G I R A + + L ++ +H+ Sbjct: 1 MQRFHIVLHQPRIPQNTGNIGRLCFASNSILHLIYPLGFHLTQKELKRAGMDYWQHLEVY 60 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 NL + + K + L G E GL K + Sbjct: 61 EWENLESFMSSSLLNLPHFYLTTKTQKPYY-NANLSKGAYLHFGREDAGLDTKILQAKQQ 119 Query: 251 -MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN++ + + LY Sbjct: 120 DCYTIPMQNNARSLNLATSVGIVLYEGIRQR 150 >gi|311112473|ref|YP_003983695.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931] gi|310943967|gb|ADP40261.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931] Length = 246 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G EG GL + A + G +++N + AA +A++ Sbjct: 183 YDLPKNCVLVFGQEGPGLSEEIHAAARDTLSIEQFGSTRSMNAATAAGIAMHAWVRR 239 >gi|289577474|ref|YP_003476101.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus Ab9] gi|289527187|gb|ADD01539.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus Ab9] Length = 156 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 3/65 (4%) Query: 219 PLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMPG--IIKALNVSNAAAVALYI 275 + D ++ G E GL ++ + M ++LN+SN+ A+ LY Sbjct: 86 YYHEVKYEDNSYILFGKETAGLPKWLIEKYYEDCIRIPMHEVISTRSLNLSNSVAIVLYE 145 Query: 276 TQNHF 280 Sbjct: 146 ALRQL 150 >gi|320170244|gb|EFW47143.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864] Length = 220 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L++G E GL A + + + G+ + NVS A A+A+Y Sbjct: 158 YDYRFDRNTVLVIGNEKSGLTQDILNLADDILEIPIYGMPYSHNVSAATAIAIYEYCKQ 216 >gi|256393456|ref|YP_003115020.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM 44928] gi|256359682|gb|ACU73179.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM 44928] Length = 174 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 1/148 (0%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 L+ N+G +LR+ A + + P A A H Sbjct: 22 SHSCWDHLIAAPLWPMHEANLGTLLRTCDAVGACLAVPRLPWVPEALARGNTLRHPACIH 81 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 ++S LT + + + ++ L+LG E G+ P Sbjct: 82 WTGDQLSWLTHQHTRTDTTIVGAELADEALRLADLP-PARNRTVLVLGHERDGIPPDAVA 140 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G +LNV+ A ++ LY Sbjct: 141 LLDLAVEIPMVGTGASLNVAVAGSLVLY 168 >gi|221104729|ref|XP_002169584.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1 homolog, partial [Hydra magnipapillata] Length = 183 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 10/143 (6%) Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--- 198 DP N+GAI+RSA F D II ++ S +A ++K +SGA+E ++ Sbjct: 35 QDPMNLGAIIRSATYFGVDKIIVNEKNSCGLTATVSKVSSGAMEWASVYSTRDMQRLLKD 94 Query: 199 --LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH- 255 + G T + + + L++G EG G+ P T + + Sbjct: 95 LLNYDWNLIGTVTKDYTQSKVHSCHDVQLSKRNVLVIGNEGFGMNPLITSICTKLVTIPS 154 Query: 256 ----MPGIIKALNVSNAAAVALY 274 +P + +LNVS A + L+ Sbjct: 155 FNDRLPEGLDSLNVSVATGILLH 177 >gi|56753289|gb|AAW24848.1| SJCHGC03201 protein [Schistosoma japonicum] Length = 237 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 12/67 (17%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII------------KALNVSNAAAVAL 273 + L LG+E +GL + + + G +LNV+ A + L Sbjct: 155 PRPLVLALGSESRGLSENILNSCDLLLRIPGFGDSTKFNHCVSQSIPSSLNVAVATGILL 214 Query: 274 YITQNHF 280 Y + Sbjct: 215 YQLTMYR 221 >gi|66362096|ref|XP_628012.1| tRNA (Gm18) ribose methylase; trm3p; SpoU superfamily - SPOUT methylase [Cryptosporidium parvum Iowa II] gi|46227488|gb|EAK88423.1| tRNA (Gm18) ribose methylase; trm3p; SpoU superfamily - SPOUT methylase [Cryptosporidium parvum Iowa II] Length = 1808 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 68/215 (31%), Gaps = 2/215 (0%) Query: 68 IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 + + + K + + ++ + + L Sbjct: 1587 LLKKIICKEMSGYYAQEKEEKEEHNAIEIQRSHNYQLKFEPPHYDSLISGEPRSRRSDNR 1646 Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-- 185 + S L+++ V+ NI I R+ F + ++ + + ++ S + Sbjct: 1647 LLNRSGLIVIGSLVDKVPNIAGITRTCEVFRANELLLSSKKVMNDPIFRQISVTAEKWLP 1706 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +K + S ++ + +K LILG E +G+ + Sbjct: 1707 INELEPTKIKEYVQRKRMEGYKIFGLEQTSSSISIKGCVFPEKSVLILGKEKEGIPSEIV 1766 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + GII++LNV +A++ +Y F Sbjct: 1767 SIVDQCIEIPQYGIIRSLNVHVSASIFIYEYTTQF 1801 >gi|325272151|ref|ZP_08138582.1| RNA methyltransferase [Pseudomonas sp. TJI-51] gi|324102714|gb|EGC00130.1| RNA methyltransferase [Pseudomonas sp. TJI-51] Length = 251 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 IALVFGREHAGLTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLAYEVR 158 >gi|224532063|ref|ZP_03672695.1| tRNA/rRNA methyltransferase [Borrelia valaisiana VS116] gi|224511528|gb|EEF81934.1| tRNA/rRNA methyltransferase [Borrelia valaisiana VS116] Length = 218 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 1/155 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R + L L+ + N A +R+ I + + + + Sbjct: 29 NRRTNYLTFALEDIFHSQNASATVRTGEILGFSNI-HVIDKKNNYTLNPDITLGSSQWIN 87 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + ++ LE N+K+A+ G E GL + Sbjct: 88 LNKYKDSKFAIDRLKSDGYSIVATSLNEQSINLENFPINNKMAVFFGTELTGLSAEVLGA 147 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A + M G ++ N+S A + +Y K Sbjct: 148 ADLYVKIPMYGFTQSYNISVAVGIVMYSLLIRLRK 182 >gi|149276476|ref|ZP_01882620.1| putative SpoU rRNA methylase family protein [Pedobacter sp. BAL39] gi|149232996|gb|EDM38371.1| putative SpoU rRNA methylase family protein [Pedobacter sp. BAL39] Length = 219 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 72/194 (37%), Gaps = 4/194 (2%) Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 D N + + D+ + + E + L++VLD+V Sbjct: 19 DLNANKGASYREK-RKKTDETTNNTGMEKLKLDELNRVSIEEFKEQEKLPLVVVLDNVRS 77 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 HNIG+I R+ F+ + + + K+A GA + + + + +A++ + Sbjct: 78 MHNIGSIFRTGDGFAITQLCLCGITAQPPHREIEKTALGATQSVDWKHYESTLEAVKALR 137 Query: 204 SWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 G+ I + S + K K ALI G E G+ + E + G Sbjct: 138 EEGYLIIAVEQASGSTMLNTFKPQQDQKYALIFGNEVNGVSDEVMEVIDECIEIPQFGTK 197 Query: 261 KALNVSNAAAVALY 274 + N+ +A + L+ Sbjct: 198 HSFNIVISAGIVLW 211 >gi|170723500|ref|YP_001751188.1| RNA methyltransferase [Pseudomonas putida W619] gi|169761503|gb|ACA74819.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida W619] Length = 251 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 IALVFGREHAGLTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLAYEVR 158 >gi|283457160|ref|YP_003361728.1| rRNA methylase [Rothia mucilaginosa DY-18] gi|283133143|dbj|BAI63908.1| rRNA methylase [Rothia mucilaginosa DY-18] Length = 253 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 5/182 (2%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + + + + V + + LD R + +++ NIG ++R+A A Sbjct: 69 DEELLREGDRRNVVDKYRYWSMDAIIADLDT-RRHDFHVAIENWQHDLNIGTVVRTANAM 127 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + R + + + H P I + + G Sbjct: 128 LAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPTIEDFVAWAQGEGLEIIGIDIFP----DS 183 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 PLE K L+ G EG GL + A + G +++N + AA +A++ Sbjct: 184 VPLETYDLPKKCVLVFGQEGPGLSEELHAAARDTLSIEQFGSTRSMNAATAAGIAMHAWV 243 Query: 278 NH 279 Sbjct: 244 RR 245 >gi|289555644|ref|ZP_06444854.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 605] gi|289440276|gb|EFD22769.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 605] Length = 158 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E GL T T + M ++LN+SNAAAVA+Y Sbjct: 95 YRAGDVLMFGPEPTGLDEATLADTHITGQVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 151 >gi|15610502|ref|NP_217883.1| tRNA/rRNA methylase SpoU [Mycobacterium tuberculosis H37Rv] gi|15842962|ref|NP_337999.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] gi|31794549|ref|NP_857042.1| tRNA/rRNA methylase SpoU [Mycobacterium bovis AF2122/97] gi|121639293|ref|YP_979517.1| putative tRNA/rRNA methylase spoU [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663229|ref|YP_001284752.1| tRNA/rRNA methylase SpoU [Mycobacterium tuberculosis H37Ra] gi|148824575|ref|YP_001289329.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis F11] gi|167967350|ref|ZP_02549627.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis H37Ra] gi|215428869|ref|ZP_03426788.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T92] gi|215432336|ref|ZP_03430255.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis EAS054] gi|218755145|ref|ZP_03533941.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis GM 1503] gi|219559441|ref|ZP_03538517.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T17] gi|224991790|ref|YP_002646479.1| putative tRNA/rRNA methylase [Mycobacterium bovis BCG str. Tokyo 172] gi|253800413|ref|YP_003033414.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 1435] gi|254233970|ref|ZP_04927295.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis C] gi|254365983|ref|ZP_04982028.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis str. Haarlem] gi|254552468|ref|ZP_05142915.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260202561|ref|ZP_05770052.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T46] gi|260206730|ref|ZP_05774221.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis K85] gi|289444978|ref|ZP_06434722.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T46] gi|289571603|ref|ZP_06451830.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T17] gi|289576099|ref|ZP_06456326.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis K85] gi|289752083|ref|ZP_06511461.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T92] gi|289755496|ref|ZP_06514874.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis EAS054] gi|289763549|ref|ZP_06522927.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis GM 1503] gi|297636026|ref|ZP_06953806.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 4207] gi|297733024|ref|ZP_06962142.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN R506] gi|306777707|ref|ZP_07416044.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu001] gi|306782432|ref|ZP_07420769.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu002] gi|306786251|ref|ZP_07424573.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu003] gi|306790621|ref|ZP_07428943.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu004] gi|306795148|ref|ZP_07433450.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu005] gi|306799339|ref|ZP_07437641.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu006] gi|306805185|ref|ZP_07441853.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu008] gi|306809372|ref|ZP_07446040.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu007] gi|306969477|ref|ZP_07482138.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu009] gi|306973823|ref|ZP_07486484.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu010] gi|307081535|ref|ZP_07490705.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu011] gi|307086140|ref|ZP_07495253.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu012] gi|313660356|ref|ZP_07817236.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN V2475] gi|2661644|emb|CAA15751.1| PROBABLE tRNA/rRNA METHYLASE SPOU (tRNA/rRNA METHYLTRANSFERASE) [Mycobacterium tuberculosis H37Rv] gi|13883300|gb|AAK47813.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] gi|31620145|emb|CAD95558.1| PROBABLE tRNA/rRNA METHYLASE SPOU (tRNA/rRNA METHYLTRANSFERASE) [Mycobacterium bovis AF2122/97] gi|121494941|emb|CAL73427.1| Probable tRNA/rRNA methylase spoU [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599499|gb|EAY58603.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis C] gi|134151496|gb|EBA43541.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis str. Haarlem] gi|148507381|gb|ABQ75190.1| tRNA/rRNA methylase SpoU [Mycobacterium tuberculosis H37Ra] gi|148723102|gb|ABR07727.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis F11] gi|224774905|dbj|BAH27711.1| putative tRNA/rRNA methylase [Mycobacterium bovis BCG str. Tokyo 172] gi|253321916|gb|ACT26519.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 1435] gi|289417897|gb|EFD15137.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T46] gi|289540530|gb|EFD45108.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis K85] gi|289545357|gb|EFD49005.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T17] gi|289692670|gb|EFD60099.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T92] gi|289696083|gb|EFD63512.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis EAS054] gi|289711055|gb|EFD75071.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis GM 1503] gi|308213977|gb|EFO73376.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu001] gi|308324923|gb|EFP13774.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu002] gi|308329154|gb|EFP18005.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu003] gi|308332986|gb|EFP21837.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu004] gi|308336602|gb|EFP25453.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu005] gi|308340475|gb|EFP29326.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu006] gi|308344345|gb|EFP33196.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu007] gi|308348278|gb|EFP37129.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu008] gi|308353003|gb|EFP41854.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu009] gi|308356844|gb|EFP45695.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu010] gi|308360792|gb|EFP49643.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu011] gi|308364407|gb|EFP53258.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu012] gi|323717987|gb|EGB27174.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CDC1551A] gi|328460146|gb|AEB05569.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 4207] Length = 154 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E GL T T + M ++LN+SNAAAVA+Y Sbjct: 91 YRAGDVLMFGPEPTGLDEATLADTHITGQVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 147 >gi|315927808|gb|EFV07134.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 163 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 23/48 (47%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 N K L+LG+EG GL K + + M +LNVS A A+ Sbjct: 110 NGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 157 >gi|238796769|ref|ZP_04640275.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia mollaretii ATCC 43969] gi|238719500|gb|EEQ11310.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia mollaretii ATCC 43969] Length = 257 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 20/50 (40%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + + +LN++ A + Y + Sbjct: 108 PVALVFGRERVGLTNEELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157 >gi|159113391|ref|XP_001706922.1| TAR RNA loop binding protein, putative [Giardia lamblia ATCC 50803] gi|157435023|gb|EDO79248.1| TAR RNA loop binding protein, putative [Giardia lamblia ATCC 50803] Length = 1127 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 34/99 (34%) Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 ++ +A L + + +K S L+ K L+LG Sbjct: 1017 MSMTADMWLNIEEVQPCNLVQWIAEKKKDDYSVVCLEQSSRSVYLQDADLPRKAVLVLGN 1076 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E KG + + G I++LNV + A+ ++ Sbjct: 1077 ERKGCPEEILSLCDMTVEIQQLGNIRSLNVHVSCAIFVW 1115 >gi|238062522|ref|ZP_04607231.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149] gi|237884333|gb|EEP73161.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149] Length = 210 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 23/54 (42%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + AL+ G EG GL + + + G +++N A+ +A++ Sbjct: 149 LPRRCALLFGQEGPGLSDAARAACDQLFSIAQYGSTRSINAGVASGIAMHAWIR 202 >gi|46446084|ref|YP_007449.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Candidatus Protochlamydia amoebophila UWE25] gi|46399725|emb|CAF23174.1| putative tRNA (Guanosine-2'-O-)-methyltransferase [Candidatus Protochlamydia amoebophila UWE25] Length = 246 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 6/153 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + + + LD++ HN+G+I+R+ AFS I + + + + + GA + Sbjct: 85 NPSWPISIYLDNLRSAHNVGSIIRTVEAFSLGSIYFSTQTPYTNHKQVQNVSMGAYQ--- 141 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 +S+ L + I + L++G E G + A Sbjct: 142 ---WVKCYQNEDLNDLTQPIIALETSEEAINLYEFIFPEHFTLVVGNEEYGCSQEILTKA 198 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + + G +LNV+NA A+ Sbjct: 199 HYLIEIPLRGRKNSLNVANAFAITAGEIYRQRK 231 >gi|23098542|ref|NP_692008.1| rRNA methylase [Oceanobacillus iheyensis HTE831] gi|22776768|dbj|BAC13043.1| rRNA methylase [Oceanobacillus iheyensis HTE831] Length = 157 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 53/150 (35%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R+ +A + ++S ++ ++ EH+ Sbjct: 1 MSVHVVLFEPEIPANTGNIGRTCLATGVTLHLIHPLGFSTDSKMVRRAGLDYWEHVDVRE 60 Query: 192 ISNLTD-ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT 249 ++ D + + + + + + G E G+ + Sbjct: 61 YQSIEDLYETYPDAGFYYIENFGTKHYTDFDFSDSDMDQFFVFGKESTGIPKELLIGKED 120 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +HM +++LN+SN +A+ +Y Sbjct: 121 QCLRIHMNDKVRSLNLSNTSAIIIYEVLRQ 150 >gi|255532027|ref|YP_003092399.1| tRNA/rRNA methyltransferase SpoU [Pedobacter heparinus DSM 2366] gi|255345011|gb|ACU04337.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter heparinus DSM 2366] Length = 176 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 3/153 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT---KRYSPSESAVLAKSAS 181 L++VLD+V HNIG++ R+A F+ + + R E A A+ Sbjct: 16 EFKEQEKLPLIVVLDNVRSMHNIGSVFRTADGFAIEKLYLCGITARPPHREIEKTALGAT 75 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 ++ + + +L+ + + + + K ALI G E G+ Sbjct: 76 QSVAWAHFETTVDAIASLKADGYHIIGIEQAAGSTMLNTYKPTYSKKYALIFGNEVNGVS 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + G + N+ +A + L+ Sbjct: 136 DEVMAQIDECIEIPQFGTKHSFNIVISAGIVLW 168 >gi|302757075|ref|XP_002961961.1| hypothetical protein SELMODRAFT_77385 [Selaginella moellendorffii] gi|302775416|ref|XP_002971125.1| hypothetical protein SELMODRAFT_95047 [Selaginella moellendorffii] gi|300161107|gb|EFJ27723.1| hypothetical protein SELMODRAFT_95047 [Selaginella moellendorffii] gi|300170620|gb|EFJ37221.1| hypothetical protein SELMODRAFT_77385 [Selaginella moellendorffii] Length = 186 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ L+LG E G+ +T + + G+I++LNV + A+A++ Sbjct: 120 NNYSFPSRVVLVLGREKDGIPVNLIQTLDACLEIPQLGMIRSLNVHVSGAIAVWEYTKQ 178 >gi|157371864|ref|YP_001479853.1| RNA methyltransferase [Serratia proteamaculans 568] gi|157323628|gb|ABV42725.1| RNA methyltransferase, TrmH family, group 1 [Serratia proteamaculans 568] Length = 244 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 24/71 (33%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + E ++ +AL+ G E GL + + +LN++ Sbjct: 87 PWPMLEPRECGIRAVHEGEHAPVALVFGRERVGLTNDELQKCHYHVAIPANPDYSSLNLA 146 Query: 267 NAAAVALYITQ 277 A + Y + Sbjct: 147 MAVQILAYEVR 157 >gi|153952499|ref|YP_001398024.1| RNA methyltransferase [Campylobacter jejuni subsp. doylei 269.97] gi|152939945|gb|ABS44686.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. doylei 269.97] Length = 155 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G+I R I + ++ + + I Sbjct: 1 MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAVRRAGLDYWDKLEPIIW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSM 251 NL + L + + + ++ S+K L G+E GL + + + Sbjct: 61 ENLEEFLNENMIYKNRFFFATTKSRKAYFNTEFQKNDFLFFGSESYGLPMELMQLNWKNA 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ + + Y Sbjct: 121 ITIPMKSYGRSLNLATSVGIISYEALRQ 148 >gi|170780953|ref|YP_001709285.1| tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] gi|169155521|emb|CAQ00633.1| tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] Length = 218 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 61/180 (33%), Gaps = 5/180 (2%) Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + + V + LD R + +++ NIG+I+RSA AF+ Sbjct: 39 ELLERGDTRNVIDRYRYWRMDAIVADLDQHR-HPFHVAIENWQHDMNIGSIVRSANAFAA 97 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D + R ++ + + H I + + + S + Sbjct: 98 DTVHIVGRRRWNKRGAMVTDRYQHVVHHATIADLVEWARGEGLPIIAIDNVDGSVLLET- 156 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ L+ G EG GL + A + G +++N S AAAV ++ Sbjct: 157 ---TRLPERCVLVFGQEGPGLSDEAVAAADMTVAISQFGSTRSINASAAAAVVMHAWVMQ 213 >gi|225010432|ref|ZP_03700903.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-3C] gi|225005261|gb|EEG43212.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-3C] Length = 177 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 66/155 (42%), Gaps = 3/155 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + L+++LD++ +NIG++ R+A AF I + + K+A GA E + + Sbjct: 21 QKTPLILILDNIRSLNNIGSVFRTADAFLVTKIYLCGITAQPPHKDINKTALGATETVAW 80 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQE 246 N + ++++ + + ++ ALI G E KG++ Sbjct: 81 EYRENTLELVKELQAQSIAVWSVEQAQGATFLDKMSLQPETTYALIFGNEVKGVQQAVVN 140 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + + G +LN+S +A V ++ + Sbjct: 141 ESDGVVEIPQFGTKHSLNISVSAGVVVWDFWKKLS 175 >gi|319442925|ref|ZP_07992081.1| putative rRNA methylase, SpoU class [Corynebacterium variabile DSM 44702] Length = 164 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALN 264 + ++ + L+ G E GL + + T + M +++N Sbjct: 83 HRVFAFTAHADTWFTDITYEPGDVLLFGTEPTGLEQQALDDPRVTQHVRIPMLPGRRSMN 142 Query: 265 VSNAAAVALYITQNH 279 ++NAAAVA Y Sbjct: 143 LANAAAVATYEAWRQ 157 >gi|261866832|ref|YP_003254754.1| TrmH family RNA methyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412164|gb|ACX81535.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 158 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + T + L++ + + L+ G E +G+ + Sbjct: 59 KHKTFEAFLQSEQPKRLFALTTKGTPAHSEVKFSLGDYLLFGPETRGIPMDILNSMPPEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148 >gi|284992366|ref|YP_003410920.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM 43160] gi|284065611|gb|ADB76549.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM 43160] Length = 213 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E L+ G EG GL + ++ A + + G +++N AA +A++ Sbjct: 150 EPLPRACVLLFGQEGTGLSAEARDAADGVLSIAQFGSTRSVNAGVAAGIAMHAWVRQ 206 >gi|146302323|ref|YP_001196914.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] gi|146156741|gb|ABQ07595.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] Length = 165 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 69/158 (43%), Gaps = 3/158 (1%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 + + +V DH+ NIG++ R + AF + II + P + K++ Sbjct: 5 HEENQFERKTFPITLVCDHIYFQQNIGSLFRISEAFGVENIIFLGKDIPLTPRKINKTSR 64 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQT---IGLSSDSKKPLEQEIKNDKIALILGAEGK 238 H+P+ I T+ + F+ S+ K+ K AL++G+E Sbjct: 65 STHLHVPHQIIEETTELTAYLQENNFEIIALEITSNSKPLKEVLIPKDKKTALLIGSEIA 124 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 G+ + + + + H++M G ++NV AA++ALY Sbjct: 125 GISEELLKISHQIVHINMFGKNSSMNVVQAASIALYEI 162 >gi|118444087|ref|YP_877482.1| RNA methyltransferase [Clostridium novyi NT] gi|118134543|gb|ABK61587.1| RNA methyltransferase, TrmH family, group 2 [Clostridium novyi NT] Length = 160 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 3/155 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + L +VL P N G I R+ V + + + L ++ H+ Sbjct: 1 MLDTPNLNIVLFEPEIPQNTGNIGRTCVLTNSKLHLIKPLGFRIDDKSLKRAGLDYWPHL 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE- 246 + D ++K E + K ++ G E GL ++ Sbjct: 61 DVEVHESFDDMIKKYPDANIYLSTTKEAKYHHDEVKYKTG-DFIVFGRESSGLPEYIRDR 119 Query: 247 TATSMAHLHMPGII-KALNVSNAAAVALYITQNHF 280 + + M ++LN+SN ++ Y Sbjct: 120 YVENRIRVPMIKTTTRSLNLSNTVSIVAYEALRQL 154 >gi|302527165|ref|ZP_07279507.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4] gi|302436060|gb|EFL07876.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4] Length = 153 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++ P N G +R A C+ + E L ++ H Sbjct: 1 MFRVLFYRPEIPPNTGNAIRLAANTGCELHLVEPLGFTLEDKQLRRAGLDY--HDLARVH 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + A + S+ + + L+ G E GL + Q A T Sbjct: 59 VHADLAAAWQVLLPAKVYAFSATATRLYTDVSYAPGDVLMFGPESAGLPDEVQRAAEVTD 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN++N AA+A+Y Sbjct: 119 RLRLPMLPNNRSLNLANTAAIAVYEGWRQ 147 >gi|113954223|ref|YP_730533.1| rRNA methylase [Synechococcus sp. CC9311] gi|113881574|gb|ABI46532.1| Predicted rRNA methylase [Synechococcus sp. CC9311] Length = 176 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 52/174 (29%), Gaps = 9/174 (5%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 + + S ++ L + L P N G I R+ AF + E Sbjct: 1 MNKVSNNQSSEEQSLIQKPLRVALFEPRIPPNTGNIARTCAAFGLPLDLIEPLGFSLEDR 60 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 L ++ H+ ++ + + E L+ G Sbjct: 61 YLKRAGLDYWPHVDLTIHKDVDAFFESLAQPSRVIGCSRRGGILLRNME-FQKGDVLLFG 119 Query: 235 AEGKGLRPKTQETATSMAHLHMP--------GIIKALNVSNAAAVALYITQNHF 280 E GL + + + MP G +++LN+S A A+ + + Sbjct: 120 REDTGLPETIRSRCHQITTISMPCSAGEDGQGGVRSLNLSVACAIVSHQAGSQL 173 >gi|281421671|ref|ZP_06252670.1| RNA methylase, SpoU family [Prevotella copri DSM 18205] gi|281404305|gb|EFB34985.1| RNA methylase, SpoU family [Prevotella copri DSM 18205] Length = 179 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + A+I G E KG++ + + + G +LNVS A + ++ Sbjct: 119 HPSLSKGYAVIFGNEVKGVKQNIVDMSDGCLEIPQFGTKHSLNVSVTAGIVVWEFAK 175 >gi|308176006|ref|YP_003915412.1| RNA methyltransferase [Arthrobacter arilaitensis Re117] gi|307743469|emb|CBT74441.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117] Length = 218 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 5/174 (2%) Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 + V T + LD R + +++ NIG ++RSA AF + Sbjct: 42 DRRNVADKYRYWTMDAIIADLDE-RRHDFHIAIENWQHDMNIGTVVRSANAFLAKEVHII 100 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 R + + + H + + G PLE Sbjct: 101 GRRRWNRRGAMVTDRYQHVRHHATVEEFVAWAQEAGLTILGIDIFP----DSVPLETYDL 156 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G EG GL P+ A + G +++N ++AA +A++ Sbjct: 157 PKNCVLVFGQEGPGLSPEVHAAAKDTLSIEQFGSTRSINAASAAGIAMHAWVRR 210 >gi|224534903|ref|ZP_03675472.1| tRNA/rRNA methyltransferase [Borrelia spielmanii A14S] gi|224513843|gb|EEF84168.1| tRNA/rRNA methyltransferase [Borrelia spielmanii A14S] Length = 218 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 53/145 (36%), Gaps = 1/145 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L VL+ + PHN A +R+ + ++ + + + + Sbjct: 31 RTNYLTFVLEDIFQPHNASATIRTGEILGLSDVHIIEKNNKC-TLNPDITLGSSQWINLN 89 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + ++ LE N+K+A+ G E GL + A Sbjct: 90 KYKNTKLAIDRLKSNGYIIVATSLNEQSVNLENFPINNKMAVFFGTELTGLSAEVLGAAD 149 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + M G ++ N+S A A+ +Y Sbjct: 150 LCVKIPMYGFTQSYNISVAVAIVIY 174 >gi|168702027|ref|ZP_02734304.1| RNA methyltransferase, TrmH family, group 1 [Gemmata obscuriglobus UQM 2246] Length = 269 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 25/56 (44%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +A++ G E GL + + ++ +LN++ A A+ Y + ++K Sbjct: 113 GPVAVVFGPEPHGLSNEEIGRCHGLVNVPSDPASGSLNLAQAVAICCYEFRKAWSK 168 >gi|89095322|ref|ZP_01168240.1| RNA methyltransferase TrmH, group 1 [Oceanospirillum sp. MED92] gi|89080397|gb|EAR59651.1| RNA methyltransferase TrmH, group 1 [Oceanospirillum sp. MED92] Length = 248 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 22/51 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 KIA++ G E +GL + H+ +LN++ A V Y + Sbjct: 107 KKIAIVFGREDRGLTNEELHLCHYHVHIPSNPEFSSLNLAAAVQVITYELR 157 >gi|331006347|ref|ZP_08329659.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium IMCC1989] gi|330419852|gb|EGG94206.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium IMCC1989] Length = 127 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 2/94 (2%) Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + + +S+ + + ++ G E +GL Sbjct: 27 WQDMRTYENWDDFISQTAPKRLFAISTKGARHYHDIEFANDDYVVFGPETRGLPDNVLYH 86 Query: 248 A--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 T + M +++N+SN+ AV +Y + Sbjct: 87 TLMTEQVRIPMTENSRSMNLSNSVAVIVYESWRQ 120 >gi|71082809|ref|YP_265528.1| rRNA methylase [Candidatus Pelagibacter ubique HTCC1062] gi|91762768|ref|ZP_01264733.1| rRNA Methylase [Candidatus Pelagibacter ubique HTCC1002] gi|71061922|gb|AAZ20925.1| rRNA Methylase [Candidatus Pelagibacter ubique HTCC1062] gi|91718570|gb|EAS85220.1| rRNA Methylase [Candidatus Pelagibacter ubique HTCC1002] Length = 153 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 43/149 (28%), Gaps = 4/149 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + P N AI+R+ D I + + + Sbjct: 7 IALYEPDIPQNTAAIIRTCACLGADLEIIEPCGFLFSDKRFKRVVMDYM--DEKMIRFYQ 64 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + I L++ S L+ G E G+ + Sbjct: 65 SSDEFFKSKKNERVILLTTKSADSYTDFKFESNDTLLFGRESAGVPDHVHNLIKYRLKIP 124 Query: 256 MPGIIKALNVSNAAAVALYITQNH--FAK 282 M ++LN++++ A+ L F K Sbjct: 125 MMDNKRSLNIASSVAIILSENLRQTNFNK 153 >gi|315498163|ref|YP_004086967.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB 48] gi|315416175|gb|ADU12816.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB 48] Length = 159 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 2/146 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + P N+G+ LR + P + ++A R + Sbjct: 3 LALFQPDIPQNLGSALRLCACLDVALDVIEPCGFPLSDRAIRRAAMDYGGQADVTRHDSW 62 Query: 196 --TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + + ++ +P + L++G E G+ A + Sbjct: 63 AAFLNRRDDWPQDTRIVLFTTKGAEPYQNFQFGPHDILLMGRESAGVPDDVHNAAEARLL 122 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 + M ++++NV NAAA+AL Sbjct: 123 IPMRPGMRSINVINAAAMALGEALRQ 148 >gi|270264747|ref|ZP_06193012.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia odorifera 4Rx13] gi|270041430|gb|EFA14529.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia odorifera 4Rx13] Length = 244 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 24/71 (33%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + E ++ +AL+ G E GL + + +LN++ Sbjct: 87 PWPMLEPRECGVRAVHEGEHAPVALVFGRERVGLTNDELQKCHYHVAIPANPDYSSLNLA 146 Query: 267 NAAAVALYITQ 277 A + Y + Sbjct: 147 MAVQILAYEVR 157 >gi|154315816|ref|XP_001557230.1| hypothetical protein BC1G_04480 [Botryotinia fuckeliana B05.10] gi|150846876|gb|EDN22069.1| hypothetical protein BC1G_04480 [Botryotinia fuckeliana B05.10] Length = 586 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 62/310 (20%), Positives = 104/310 (33%), Gaps = 75/310 (24%) Query: 48 NLFLYGVHTVSAALNNPS---RKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQT 100 + FLYG V AALN RK+++L K R A L V+ + Sbjct: 254 SEFLYGTSVVEAALNARRKRSRKLYKLYILKGEDRQNGERDGAIAKLAQKKGVEVAIVRG 313 Query: 101 IDKI-----VGKEAVHQGLALETAPLLSPTL----------------------------- 126 D + + + H G LE +PL L Sbjct: 314 HDWLRTLDKMSQGRPHNGYILEVSPLPRLPLMSLGSIIDQDDSFAIKLTPDHQSREEIEV 373 Query: 127 -----------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 D+ L+++LD + DP N+GAILR+A+ + + R S S + V Sbjct: 374 NGNDTIIKVAKDSTGRKPLILLLDSIEDPQNLGAILRTALFMGVTAVAISTRNSASFTPV 433 Query: 176 LAKSASGALEH--------------------IPYIRISNLTDALQKMHSWGFQTIGLSSD 215 + K+++GA E+ + + Sbjct: 434 VFKASAGAAENIEIFSVNKPGGFVTGSQAAGWKIYAAVAPPAPRKADSRHMWPPTSQEFV 493 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSNAAAVA 272 L+ +++D L++G EG+GLR ++ A + G + +LNVS A + Sbjct: 494 WTHDLQDPLRDDPCILMVGGEGEGLRKALRDHADVHLSIKGAGNRGRLDSLNVSVATGML 553 Query: 273 LYITQNHFAK 282 + Sbjct: 554 CDAFMRQTTR 563 >gi|285019054|ref|YP_003376765.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73] gi|283474272|emb|CBA16773.1| putative trna/rrna methyltransferase protein [Xanthomonas albilineans] Length = 277 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 86/222 (38%), Gaps = 8/222 (3%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108 LYG + V A I +L + + L + H + V ++K+ Sbjct: 36 LYGFNAVRAVYARRPEAIRKLYLAEARIPALQPLLKWCVAHRVGYRVVDDNDLNKLAA-S 94 Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 A H+G+ + L L + LD V +PHN GAILRSA F I+ Sbjct: 95 AHHEGVVADVLREAPLPLADWLRTLAPGPALALWLDGVGNPHNFGAILRSAAHFGAAAIL 154 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + + + S A+ A G E +P +R+ AL ++ + F + L Sbjct: 155 LPEGATLALSGAAARVAEGGAEAVPLVRLPAPAQALAQLRNADFALAATLVEGGDALFAT 214 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 ++ ++GAE G+ + + G +++LNV Sbjct: 215 ALPQRLIYVMGAERDGMDRGFAQACDLRLSIPGSGAVESLNV 256 >gi|238795106|ref|ZP_04638697.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia intermedia ATCC 29909] gi|238725554|gb|EEQ17117.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia intermedia ATCC 29909] Length = 257 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 24/71 (33%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + E ++ +AL+ G E GL + + +LN++ Sbjct: 87 PWPMLEPRECGVRSAHEAEHAPVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLA 146 Query: 267 NAAAVALYITQ 277 A + Y + Sbjct: 147 MAVQILAYEVR 157 >gi|255065468|ref|ZP_05317323.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sicca ATCC 29256] gi|255050293|gb|EET45757.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sicca ATCC 29256] Length = 154 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R D + P +SA + ++ H Sbjct: 1 MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDY--HEFAKLT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + G + L++ K + + + G E +GL + +T Sbjct: 59 VHENFEDCLKALEGRRIFALTTKGKTRPNEVSFVEGDVFLFGPETRGLPAEILDTLPEGQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++N+SN AV L+ Sbjct: 119 KLRLPMKPGSRSMNLSNTVAVILFEAWRQ 147 >gi|325922006|ref|ZP_08183810.1| putative rRNA methylase SpoU family [Xanthomonas gardneri ATCC 19865] gi|325547509|gb|EGD18559.1| putative rRNA methylase SpoU family [Xanthomonas gardneri ATCC 19865] Length = 158 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + D A + G E +GL E+ + M ++LN+SN AV ++ Sbjct: 90 YDTPQFADGDAFLFGPETRGLPADVLESIPPQHRLRVPMRPDNRSLNLSNTVAVMVFEAW 149 Query: 278 NH 279 Sbjct: 150 RQ 151 >gi|262203919|ref|YP_003275127.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247] gi|262087266|gb|ACY23234.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247] Length = 225 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+ G EG G+ Q A + G +++N AA +A++ Sbjct: 163 LPRECVLLFGQEGPGVSDDAQAQADLTVSIAQFGSTRSINAGVAAGIAMHSWVRQ 217 >gi|238898810|ref|YP_002924492.1| rRNA methylase, SpoU family [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466570|gb|ACQ68344.1| rRNA methylase, SpoU family [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 246 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 22/70 (31%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + ++ +AL+ G E GL + + +LN++ Sbjct: 91 WPEIDPKQCALYSLHQAESGPVALVFGCERTGLSNLELQKCHYHVVIPTNPEYSSLNLAM 150 Query: 268 AAAVALYITQ 277 A + Y + Sbjct: 151 AVQILSYEIR 160 >gi|325577120|ref|ZP_08147604.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392] gi|325160702|gb|EGC72823.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392] Length = 158 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDY--HEFAEIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + T + L++ + L+ G E +G+ + Sbjct: 59 KHKTFEAFLESEKPKRLFALTTKGGPAHSEVQFELGDYLMFGPETRGIPMSILDKMPMEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AVA+Y Sbjct: 119 KIRIPMTANSRSMNLSNSVAVAVYEAWRQL 148 >gi|300934218|ref|ZP_07149474.1| putative rRNA methylase [Corynebacterium resistens DSM 45100] Length = 236 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 61/185 (32%), Gaps = 6/185 (3%) Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 P+ +D G R L + +++ + NIG ++R+A Sbjct: 50 YFDPELLDN--GDRRNVVDEYRYWRMEAIIADIDTRRHSLHIAIENFENDSNIGTVVRTA 107 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AF+ D + R + + LEH P + + S Sbjct: 108 NAFAVDTVHIVGRKRWNRRGAMVTDRYQHLEHHPTVADVLEYARKHDLTVVAVDNTPGSV 167 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + L+ G EG G+ P+ Q AT + G +++N AA +A++ Sbjct: 168 PLET----ADLPKRCLLLFGQEGPGVTPEAQAGATQTVSIAQFGSTRSINAGVAAGIAMH 223 Query: 275 ITQNH 279 Sbjct: 224 AWIRQ 228 >gi|300727684|ref|ZP_07061071.1| SpoU rRNA methylase family protein [Prevotella bryantii B14] gi|299775048|gb|EFI71653.1| SpoU rRNA methylase family protein [Prevotella bryantii B14] Length = 183 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 69/157 (43%), Gaps = 8/157 (5%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L++VLD V +N+G++ RS AF + + + + K+A G + + + Sbjct: 24 PLIVVLDDVRSLYNVGSVFRSGDAFRIEAVYLCGITACPPHPEIHKTALGGEDSVEWKYF 83 Query: 193 SNLTDALQKMHSWGFQTIGLSS--------DSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 N DA+ ++H G+ + + + + Q + A+I+G E KG++ + Sbjct: 84 KNTEDAVNELHKKGYYVYSIEQVEGSTKLQNLEVDIRQHNTDQHYAMIMGNEVKGVKQQV 143 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + + G +LNVS A + ++ + A Sbjct: 144 VDMSDGCLEIPQFGTKHSLNVSTTAGIVIWEFAKNLA 180 >gi|148378220|ref|YP_001252761.1| hypothetical protein CBO0217 [Clostridium botulinum A str. ATCC 3502] gi|153934114|ref|YP_001382621.1| hypothetical protein CLB_0258 [Clostridium botulinum A str. ATCC 19397] gi|153935647|ref|YP_001386173.1| hypothetical protein CLC_0273 [Clostridium botulinum A str. Hall] gi|168177550|ref|ZP_02612214.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|170757793|ref|YP_001779848.1| hypothetical protein CLD_0558 [Clostridium botulinum B1 str. Okra] gi|170758628|ref|YP_001785548.1| hypothetical protein CLK_3399 [Clostridium botulinum A3 str. Loch Maree] gi|226947438|ref|YP_002802529.1| hypothetical protein CLM_0267 [Clostridium botulinum A2 str. Kyoto] gi|148287704|emb|CAL81769.1| putative RNA methylase [Clostridium botulinum A str. ATCC 3502] gi|152930158|gb|ABS35658.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 19397] gi|152931561|gb|ABS37060.1| conserved hypothetical protein [Clostridium botulinum A str. Hall] gi|169123005|gb|ACA46841.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra] gi|169405617|gb|ACA54028.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch Maree] gi|182671246|gb|EDT83220.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|226841794|gb|ACO84460.1| conserved hypothetical protein [Clostridium botulinum A2 str. Kyoto] Length = 155 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 6/151 (3%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ V + + + L ++ +++ Sbjct: 1 MSLNIVLFQPEIPQNTGNIARTCVLTNSRLHLIKPLGFSLDEKHLRRAGLDYWQYLDLSI 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-- 249 + + +K F +D ++ G E GL + ++ + Sbjct: 61 YESYEELREKYKDSNFYFSTTHG--NNFYTDVKYSDGDFIVFGRESSGLPDEIRD-SDPS 117 Query: 250 SMAHLHMPGII-KALNVSNAAAVALYITQNH 279 + M ++LN+SN AV Y Sbjct: 118 KCIRVPMINTTTRSLNLSNTVAVVTYEALRQ 148 >gi|254822692|ref|ZP_05227693.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium intracellulare ATCC 13950] Length = 154 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 48/149 (32%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++ N G +R+A A C+ + L ++ H Sbjct: 1 MFKLMFYSPRIAPNTGNAIRTAAATGCELHLVEPMGFDLSEPKLRRAGLDY--HDLASVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 + + A + +S + Q L+ G E GL T T Sbjct: 59 VHASLAAAWDALSPERVFAFTSHAPTSFAQVRYRAGDVLMFGPEPTGLDAATLADPHITG 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNAAAVA+Y Sbjct: 119 QVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 147 >gi|319785734|ref|YP_004145209.1| RNA methyltransferase, TrmH family, group 2 [Pseudoxanthomonas suwonensis 11-1] gi|317464246|gb|ADV25978.1| RNA methyltransferase, TrmH family, group 2 [Pseudoxanthomonas suwonensis 11-1] Length = 158 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +Q D A + G E +GL + L M ++LN+SNA AV ++ Sbjct: 90 HDQPAYADGDAFLFGCETRGLPEDVLGSIPEAQRLRLPMRPGNRSLNLSNAVAVLVFEAW 149 Query: 278 NH 279 Sbjct: 150 RQ 151 >gi|296394021|ref|YP_003658905.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985] gi|296181168|gb|ADG98074.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM 44985] Length = 221 Score = 70.6 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 4/145 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R +V++++ NIG ++R+A AF + R + + + H Sbjct: 68 RRHPFHVVIENLAHDANIGTVVRTANAFLAQAVHIVGRRRWNRRGAMVTDRYQHVHHHAT 127 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + + AL+ G EG GL P+ + A Sbjct: 128 PEEFARYAQAHHLAVVAVDNTHGAEPVET----FALPRRCALLFGQEGSGLSPELRAIAQ 183 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 S + G +++NV AA V ++ Sbjct: 184 SAVAIAQFGSTRSINVGVAAGVVMH 208 >gi|255326412|ref|ZP_05367494.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296] gi|255296452|gb|EET75787.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296] Length = 251 Score = 70.6 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 5/182 (2%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + + + + V + + LD R + +++ NIG ++R+A A Sbjct: 67 DEELLREGDRRNVVDKYRYWSMDAIIADLDT-RRHDFHVAIENWQHDLNIGTVVRTANAM 125 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + R + + + H P I + + G Sbjct: 126 LAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPTIEDFVAWAQGEGLEIIGIDIFP----DS 181 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 PLE K L+ G EG GL + A + G +++N + AA +A++ Sbjct: 182 VPLETYDLPKKCVLVFGQEGPGLSEELHAAARDTLSIEQFGSTRSMNAATAAGIAMHAWV 241 Query: 278 NH 279 Sbjct: 242 RR 243 >gi|220935230|ref|YP_002514129.1| tRNA/rRNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp. HL-EbGR7] gi|219996540|gb|ACL73142.1| tRNA/rRNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp. HL-EbGR7] Length = 247 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + S+ + +LN++ A V Y + Sbjct: 108 QRPVALLFGREQSGLSNEELDRCHSLVTIPANEAYSSLNLAAAVQVLSYELR 159 >gi|315187477|gb|EFU21233.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM 6578] Length = 236 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 22/50 (44%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +AL+ G E GL + + + + G +LN++ A V LY Sbjct: 106 VALVFGRERTGLTSEEVQACDLILTIPSSGSCPSLNLAQAVMVVLYELMR 155 >gi|303236426|ref|ZP_07323015.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN] gi|302483398|gb|EFL46404.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN] Length = 186 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 25/51 (49%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A++LG E KG++ + + + + G +LNVS A + ++ Sbjct: 130 KRYAVVLGNEVKGVKQSVVDLSDNCLEIPQFGTKHSLNVSVTAGIVIWEFA 180 >gi|73952576|ref|XP_536342.2| PREDICTED: similar to TAR RNA binding protein 1 [Canis familiaris] Length = 948 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q ++ L+LG E +G+ + + GII++LNV + A+ ++ Sbjct: 881 QYSFPERSLLLLGNEREGIPANLIQELDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 938 >gi|256420945|ref|YP_003121598.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588] gi|256035853|gb|ACU59397.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588] Length = 175 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 65/150 (43%), Gaps = 3/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + L+++LD+V HN+G++ R+A F G++ + K+A GA E + + Sbjct: 16 DKTPLVLILDNVRSMHNVGSVFRTADGFLLQGVVLCGYTPVPPHRDIQKTALGATETVEW 75 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQE 246 + T+A+ + G+ + + + + +ALI G E G+ + + Sbjct: 76 QYFATTTEAVAALQEAGYTVMAVEQAVNSIMLDQFIPASDKPLALIFGNEVSGVDAEVMK 135 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + G+ +LN+S + + ++ Sbjct: 136 MVEGCIEIPQSGMKHSLNISVSTGIVVWDI 165 >gi|281205358|gb|EFA79550.1| hypothetical protein PPL_07601 [Polysphondylium pallidum PN500] Length = 405 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 I L+ G E GL + + + L M G ++LNV+ + + Y+ F Sbjct: 344 PPICLLFGNEVAGLSQEVIDQCDYIYDLEMRGKKRSLNVAVSFGIVAYVVTQRFK 398 >gi|284008843|emb|CBA75632.1| methyltransferase [Arsenophonus nasoniae] Length = 167 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 10/158 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L ++ E R Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFTWDDKRLRRAGLDYHEFANIQRH 60 Query: 193 SNLTDA--------LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + G + L++ + L+ G E +GL Sbjct: 61 HDYFAFLTAVALSKAHLKTPSGNRLFALTTKGTPSHSSVVYQPGDYLMFGPETRGLPAYV 120 Query: 245 QE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + M +++N+SN+ AV ++ Sbjct: 121 LDGLPTSQKIRIPMLADSRSMNLSNSVAVVVFEAWRQL 158 >gi|307132079|ref|YP_003884095.1| tRNA:Cm32/Um32 methyltransferase [Dickeya dadantii 3937] gi|306529608|gb|ADM99538.1| tRNA:Cm32/Um32 methyltransferase [Dickeya dadantii 3937] Length = 248 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + QE ++ +AL+ G E GL + + + +LN++ Sbjct: 87 PWPMLEPRECGVRSVQEAQHAPVALVFGRERVGLTNEELQKCHYHVAIPANPEYSSLNLA 146 Query: 267 NAAAVALYITQ 277 A + Y + Sbjct: 147 MAVQILSYEVR 157 >gi|300175076|emb|CBK20387.2| unnamed protein product [Blastocystis hominis] Length = 698 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 28/51 (54%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +K+AL+LG E +G+ K + + GII++LNV + ++ ++ Sbjct: 530 FPEKMALVLGKEKEGIPAKIIQMLDLCIEIPQFGIIRSLNVHVSGSILIWE 580 >gi|253689402|ref|YP_003018592.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755980|gb|ACT14056.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 241 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 25/71 (35%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + QE ++ +AL+ G E GL + + +LN++ Sbjct: 87 PWPMLEPRECGVRSAQEAEHAPVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLA 146 Query: 267 NAAAVALYITQ 277 A + Y + Sbjct: 147 MAVQIIAYEVR 157 >gi|50122161|ref|YP_051328.1| putative RNA methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|81644316|sp|Q6D257|TRMJ_ERWCT RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|49612687|emb|CAG76137.1| putative RNA methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 241 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 25/71 (35%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + QE ++ +AL+ G E GL + + +LN++ Sbjct: 87 PWPMLEPRECGVRSAQEAEHAPVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLA 146 Query: 267 NAAAVALYITQ 277 A + Y + Sbjct: 147 MAVQIIAYEVR 157 >gi|331092004|ref|ZP_08340835.1| hypothetical protein HMPREF9477_01478 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402205|gb|EGG81776.1| hypothetical protein HMPREF9477_01478 [Lachnospiraceae bacterium 2_1_46FAA] Length = 165 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 1/99 (1%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G + + + + ++ + ++ G E G+ Sbjct: 48 GMDYWEDLDVTTYINYEDFLEKNPNAKIYMATTKAPNVYTDVSYEPDCYIMFGKESAGIP 107 Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M I++LN+ N+ A+ LY Sbjct: 108 EEILVLHKEDSIRIPMSQDIRSLNLGNSVAIVLYEALRQ 146 >gi|325958420|ref|YP_004289886.1| RNA methyltransferase, TrmH family, group 1 [Methanobacterium sp. AL-21] gi|325329852|gb|ADZ08914.1| RNA methyltransferase, TrmH family, group 1 [Methanobacterium sp. AL-21] Length = 233 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 22/56 (39%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 I LI G EG GL + + + + +NV++AAA+ Y Sbjct: 101 INYGGNICLIFGREGNGLSNQEIALCDVIVSIPTHEEYQIMNVTHAAAIIFYELFK 156 >gi|33861419|ref|NP_892980.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633996|emb|CAE19321.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 160 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 9/68 (13%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---------IIKALNVSNAAAVAL 273 ++ L+ G E GL + S+ + MP +++LN+S A +A+ Sbjct: 88 FRFHEDDILLFGREDTGLPNNIINASNSLISIFMPKVALSNNDPKGVRSLNLSVACGIAI 147 Query: 274 YITQNHFA 281 Y Sbjct: 148 YEAYKQIN 155 >gi|169614449|ref|XP_001800641.1| hypothetical protein SNOG_10367 [Phaeosphaeria nodorum SN15] gi|160707352|gb|EAT82702.2| hypothetical protein SNOG_10367 [Phaeosphaeria nodorum SN15] Length = 1320 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K L+LG+E G+ + + G+ ++LNV A +ALY Sbjct: 1261 LPRKCVLVLGSEKGGITAEVLAALDRCVEIRTVGVTRSLNVQTAGGIALYEWWR 1314 >gi|317490852|ref|ZP_07949288.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920399|gb|EFV41722.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 257 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 26/71 (36%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + + E ++ +A++ G E GL + + + +LN++ Sbjct: 101 PWPMLEPRECGQRSAMESEHAPVAIVFGRERVGLTNEELQKCHYHVAIPANPEYSSLNLA 160 Query: 267 NAAAVALYITQ 277 A + Y + Sbjct: 161 MAVQIISYEIR 171 >gi|315639717|ref|ZP_07894856.1| RNA methyltransferase [Enterococcus italicus DSM 15952] gi|315484494|gb|EFU74951.1| RNA methyltransferase [Enterococcus italicus DSM 15952] Length = 190 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 2/146 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + + ++ L ++ + + +L Sbjct: 25 IVLYEPLIPANTGNISRTCAATNAPLHLIEPLGFSTDDKHLKRAGLDYWDAVDITYHKSL 84 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 D L + + ++ N + + G E GL +E + Sbjct: 85 ADFLTYLGERPLHLVTKFANQTYSEVNYADNQEHFFLFGKETTGLPEDFMRENVEKCIRI 144 Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279 M +++LN+SN A+ LY Sbjct: 145 PMNDEHVRSLNLSNTVALVLYEALRQ 170 >gi|237808766|ref|YP_002893206.1| RNA methyltransferase, TrmH family, group 1 [Tolumonas auensis DSM 9187] gi|237501027|gb|ACQ93620.1| RNA methyltransferase, TrmH family, group 1 [Tolumonas auensis DSM 9187] Length = 243 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + ++ +LNV+ A Y + Sbjct: 106 LNKTVALVFGRERTGLTNEELQQCHYHVNIPANPEYSSLNVAMAVQTLCYEIR 158 >gi|331268747|ref|YP_004395239.1| tRNA/rRNA methyltransferase SpoU [Clostridium botulinum BKT015925] gi|329125297|gb|AEB75242.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium botulinum BKT015925] Length = 160 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 3/155 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L +VL P N G I R+ V + + + + ++ H+ Sbjct: 1 MANTPNLNIVLFEPEIPQNTGNIGRTCVLTNSKLHLIKPLGFSIDDKSVKRAGLDYWPHL 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246 + D ++K + + +K ++ + ++ G E GL + + Sbjct: 61 KLEIHESFDDMIRKY-PDANIYLSTTKGAKYHHDEVNYKEGDFIVFGRESSGLPDYIRDK 119 Query: 247 TATSMAHLHMPGII-KALNVSNAAAVALYITQNHF 280 + + M ++LN+SN ++ Y Sbjct: 120 YVENRIRVPMIKTTMRSLNLSNTVSIVAYEALRQL 154 >gi|291615064|ref|YP_003525221.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus ES-1] gi|291585176|gb|ADE12834.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus ES-1] Length = 186 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYI 275 P + A + G E +GL + L M ++LN+SN AV +Y Sbjct: 110 HPFNEVRYQPGDAFLFGPESRGLPAEVLAAFVPERRLRLPMLPDNRSLNLSNTVAVTVYE 169 Query: 276 TQNH 279 Sbjct: 170 AWRQ 173 >gi|56475995|ref|YP_157584.1| RNA methyltransferase CspR (SpoU class) [Aromatoleum aromaticum EbN1] gi|56312038|emb|CAI06683.1| RNA methyltransferase CspR (SpoU class) [Aromatoleum aromaticum EbN1] Length = 154 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQETA-T-SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L+ G E GL + ++ + M +++N+SNA AV ++ Sbjct: 91 YRADDVLLFGRETSGLPAEVLDSVPDMQTLRIPMCPANRSVNLSNAVAVVVFEAWRQL 148 >gi|320539263|ref|ZP_08038933.1| putative tRNA mC32/mU32 methyltransferase, SAM-dependent [Serratia symbiotica str. Tucson] gi|320030655|gb|EFW12664.1| putative tRNA mC32/mU32 methyltransferase, SAM-dependent [Serratia symbiotica str. Tucson] Length = 244 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 24/71 (33%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + Q ++ +AL+ G E GL + + +LN++ Sbjct: 87 PWPMLEPRECGVRAVQAGEHAPVALVFGRERVGLTNDELQKCHYHVAIPANPDYSSLNLA 146 Query: 267 NAAAVALYITQ 277 A + Y + Sbjct: 147 MAVQILAYELR 157 >gi|332307520|ref|YP_004435371.1| RNA methyltransferase, TrmH family, group 1 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174849|gb|AEE24103.1| RNA methyltransferase, TrmH family, group 1 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 240 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 23/70 (32%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + L E+ +AL+ G E GL + + +LN++ Sbjct: 88 WPMLEPRGCGEKLVSEVPKYPVALVFGRENNGLSNDELQQCHFHVCIPANPEYSSLNLAA 147 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 148 AVQTLCYEIR 157 >gi|330801499|ref|XP_003288764.1| hypothetical protein DICPUDRAFT_153035 [Dictyostelium purpureum] gi|325081198|gb|EGC34723.1| hypothetical protein DICPUDRAFT_153035 [Dictyostelium purpureum] Length = 1628 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K L+LG E +G+ + + G+I++LNV + ++ ++ Sbjct: 1568 FDFPEKSVLVLGKEKEGIPTEFINLLDKCIEIPQLGVIRSLNVHVSGSILMWEYTKQ 1624 >gi|225872216|ref|YP_002753671.1| RNA methyltransferase, TrmH family [Acidobacterium capsulatum ATCC 51196] gi|225793787|gb|ACO33877.1| RNA methyltransferase, TrmH family [Acidobacterium capsulatum ATCC 51196] Length = 240 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 21/52 (40%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +IAL+ G E GL ++ + ++N+ A AV LY Sbjct: 111 GRIALVFGQEKHGLTNHDLSHCDAILRIPTLPEQASMNLGQAVAVCLYEFAR 162 >gi|261820557|ref|YP_003258663.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium wasabiae WPP163] gi|261604570|gb|ACX87056.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium wasabiae WPP163] Length = 241 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A + Y + Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVR 157 >gi|238758816|ref|ZP_04619989.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia aldovae ATCC 35236] gi|238702924|gb|EEP95468.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia aldovae ATCC 35236] Length = 257 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A + Y + Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVR 157 >gi|254468187|ref|ZP_05081593.1| SpoU class tRNA/rRNA methylase [beta proteobacterium KB13] gi|207086997|gb|EDZ64280.1| SpoU class tRNA/rRNA methylase [beta proteobacterium KB13] Length = 154 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R +C + L ++ ++H ++ Sbjct: 1 MFNIVLYEPEIPPNTGNIIRLCSNSNCKLHLVKPLGFELSEKTLRRAGLDYIKHELFVIY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 N +D L K + I K + G E +GL + Sbjct: 61 ENYSDFLSKNKNINLFGISTKG--KNYYHSVSFKPDDFFMFGPETRGLPDAIRNQIEPNH 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M +++N++N ++ LY Sbjct: 119 LLRVPMAENSRSINLANTVSIILYEAWRQ 147 >gi|294669719|ref|ZP_06734785.1| hypothetical protein NEIELOOT_01619 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308285|gb|EFE49528.1| hypothetical protein NEIELOOT_01619 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 154 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R D + P +S+ + ++ H Sbjct: 1 MFTVVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDY--HEFASLT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + A G + L++ +Q + G E +GL + ++ A Sbjct: 59 VHENFADCLSALSGRRIFALTTKGSTRPDQVSFRPGDVFLFGPETRGLPAEILDSLPAGQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++N+SN AV ++ Sbjct: 119 KIRLPMKAGSRSMNLSNTVAVVVFEAWRQ 147 >gi|238921055|ref|YP_002934570.1| hypothetical protein NT01EI_3185 [Edwardsiella ictaluri 93-146] gi|238870624|gb|ACR70335.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 245 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 5/81 (6%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + + E ++ +A++ G E GL + + +LN++ Sbjct: 87 PWPMLEPRECGQRSAMESEHAPVAIVFGRERVGLTNDELQKCHYHVQIPANPEYTSLNLA 146 Query: 267 NAAAVALYITQ-----NHFAK 282 A + Y + AK Sbjct: 147 MAVQILSYEIRVAHLDRQAAK 167 >gi|134095349|ref|YP_001100424.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans] gi|133739252|emb|CAL62301.1| Putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans] Length = 248 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A+I G E GL + E + ++ +LN++ A V Y + Sbjct: 114 AVIFGNERFGLPNEIVEKCNVLINIPANPDYSSLNLAQAVQVLAYEAR 161 >gi|307717873|ref|YP_003873405.1| hypothetical protein STHERM_c01560 [Spirochaeta thermophila DSM 6192] gi|306531598|gb|ADN01132.1| hypothetical protein STHERM_c01560 [Spirochaeta thermophila DSM 6192] Length = 236 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 22/52 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +AL+ G E GL + + + + G +LN++ A V LY Sbjct: 104 RDVALVFGRERTGLTSEEVQACDLILTIPSSGACPSLNLAQAVMVVLYELMR 155 >gi|255652983|ref|NP_001157404.1| RNA methyltransferase-like protein 1B [Danio rerio] Length = 449 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 37/136 (27%), Gaps = 4/136 (2%) Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 + + T + + + + DA + Sbjct: 306 HVADNHSTTMAKHNDNTTPQKHRRPSDYGWVKGHQYQSKAHDDDDDDDDANDLCSLEDYC 365 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKALN 264 S + + +LI+G E GL + + A + M + +LN Sbjct: 366 DKNSKSLETQLYYTDWVAGHTSLIIGGETHGLSREALQLAERTSGRRLLIPMVDGVDSLN 425 Query: 265 VSNAAAVALYITQNHF 280 + AA V L+ + Sbjct: 426 SAIAAGVLLFEGRKQL 441 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 74/202 (36%), Gaps = 4/202 (1%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 +I+ + + Y KL + K+ + + L G H V +AL Sbjct: 99 KVINLTSRTRFGEVDGLLYEKLHPGDKSLAKLARIAGSKKLR--EHQVVLEGKHLVCSAL 156 Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKI-VGKEAVHQGLALETA 119 + + ++ +AL L D VK Q ++ +E + E + Sbjct: 157 DAGAEAQTLYFSSVDALRELPLDKLRQTNVVKVKMEDAQVWSELDTSQEIIAIFKRPEAS 216 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L R L ++ D V DP N+G++LRSA A C ++ TK + ++ Sbjct: 217 RLTFSEEKYGRAVPLTLICDTVRDPGNLGSVLRSAAAAGCHSVLLTKGCVDIWELKVLRA 276 Query: 180 ASGALEHIPYIRISNLTDALQK 201 A GA +P I TD Sbjct: 277 AMGAHFRLPIIPNLTWTDISNH 298 >gi|320103920|ref|YP_004179511.1| tRNA/rRNA methyltransferase SpoU [Isosphaera pallida ATCC 43644] gi|319751202|gb|ADV62962.1| tRNA/rRNA methyltransferase (SpoU) [Isosphaera pallida ATCC 43644] Length = 178 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 58/155 (37%), Gaps = 5/155 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + +L +VL H N GAI R+ V + L ++ H+ Sbjct: 1 MATDRLNIVLVHPEIAPNTGAIGRTCVGVGATLWLVRPMGFQINDRHLKRAGLDYWAHLD 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR---PKTQ 245 + + NL + +++ + S+ +P ALI G+E +GL Sbjct: 61 WRIVENLEEIVERFG--WDRLWFFSARGGRPYASLNYQPGDALIFGSESRGLPLEWRARA 118 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 E A + M + LN+SNA AVA + F Sbjct: 119 EAAERAVSIPMRPEARGLNLSNAVAVAAFEAIRQF 153 >gi|301155324|emb|CBW14790.1| predicted rRNA methylase [Haemophilus parainfluenzae T3T1] Length = 158 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDY--HEFAEIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + T + L++ + L+ G E +G+ + Sbjct: 59 KHKTFEAFLESEKPKRLFALTTKGSPAHSEVQFELGDYLMFGPETRGIPMSILDKMPMEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTIYEAWRQL 148 >gi|153938142|ref|YP_001389580.1| hypothetical protein CLI_0282 [Clostridium botulinum F str. Langeland] gi|152934038|gb|ABS39536.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum F str. Langeland] gi|295317676|gb|ADF98053.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum F str. 230613] Length = 155 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 6/151 (3%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ V + + + L ++ +++ Sbjct: 1 MSLNIVLFQPEIPQNTGNIARTCVLTNSRLHLIKPLGFSLDEKHLRRAGLDYWQYLDLSI 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-- 249 + + +K F +D ++ G E GL + ++ + Sbjct: 61 YESYEELREKYKDSNFYFSTTHG--NNFYTDVKYSDGDFIVFGRESSGLPDEIKD-SDPS 117 Query: 250 SMAHLHMPGII-KALNVSNAAAVALYITQNH 279 + M ++LN+SN AV Y Sbjct: 118 KCIRVPMINTTTRSLNLSNTVAVVTYEALRQ 148 >gi|320100237|ref|YP_004175829.1| tRNA/rRNA methyltransferase SpoU [Desulfurococcus mucosus DSM 2162] gi|319752589|gb|ADV64347.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurococcus mucosus DSM 2162] Length = 236 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +A++ G E GL + A + + LNVS A AV L+ H Sbjct: 100 FPRTRSVAILFGRESTGLTREEIGRADILVTIPANPAYPVLNVSQAVAVVLWELWKHR 157 >gi|260060604|ref|YP_003193684.1| putative SpoU rRNA methylase family protein [Robiginitalea biformata HTCC2501] gi|88784734|gb|EAR15903.1| putative SpoU rRNA methylase family protein [Robiginitalea biformata HTCC2501] Length = 178 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 61/145 (42%), Gaps = 2/145 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +++LD++ HN+G++ R+A AF + + + + K+A GA E + + + Sbjct: 26 VLILDNIRSLHNVGSVFRTADAFRVEKVWLCGITAQPPHKDIRKTALGATESVAWEYAGD 85 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 L ++ + ++ + + A +LG E KG+ + + Sbjct: 86 TLQVLDRLETTHECWALEQAEGAVSLGEFRPEPGKRYAFVLGHEVKGVSQAVIDRCRGVV 145 Query: 253 HLHMPGIIKALNVSNAAAVALYITQ 277 + G +LN+S AA V L+ Sbjct: 146 EIPQLGTKHSLNISVAAGVLLWDFY 170 >gi|330465613|ref|YP_004403356.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032] gi|328808584|gb|AEB42756.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032] Length = 207 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 49/149 (32%), Gaps = 4/149 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + +++ NIG ++R+A AF + R + + + H Sbjct: 55 RRHDFHVAIENWQHDMNIGTVVRNANAFLAAEVHIVGRRRWNRRGAMVTDRYQHVRHHES 114 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I + G + S + + L+ G EG GL + Sbjct: 115 IDDFVAWAGQHDLPLVGIDNLPGSRPLESST----LPRRCVLLFGQEGPGLSDAARAACD 170 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + G +++N A+ +A++ Sbjct: 171 QLFSIAQYGSTRSINAGVASGIAMHAWIR 199 >gi|328773133|gb|EGF83170.1| hypothetical protein BATDEDRAFT_85791 [Batrachochytrium dendrobatidis JAM81] Length = 354 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 8/57 (14%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM--------PGIIKALNVSNAAAVALYIT 276 L+LG EG G+R + + I +LNVS AA + L+ Sbjct: 294 PTILVLGNEGHGMRTLVSKHCHHHLIITQDQFSPNFKKSRIDSLNVSVAAGILLHEL 350 >gi|269140161|ref|YP_003296862.1| RNA methyltransferase [Edwardsiella tarda EIB202] gi|267985822|gb|ACY85651.1| RNA methyltransferase [Edwardsiella tarda EIB202] gi|304559994|gb|ADM42658.1| tRNA:Cm32/Um32 methyltransferase [Edwardsiella tarda FL6-60] Length = 245 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 5/81 (6%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + + E ++ +A++ G E GL + + +LN++ Sbjct: 87 PWPMLEPRECGQRSAMESEHAPVAIVFGRERVGLTNDELQKCHYHVQIPANPEYTSLNLA 146 Query: 267 NAAAVALYITQ-----NHFAK 282 A + Y + AK Sbjct: 147 MAVQILSYEIRVAHLDRQAAK 167 >gi|223996685|ref|XP_002288016.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977132|gb|EED95459.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 364 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 23/51 (45%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +AL LG E G+ ++ + M G +LNV++ A V +Y Sbjct: 307 VALFLGNEVSGVDTDIMPLLDAVVEIPMFGKKNSLNVASCAPVVMYEVLRQ 357 >gi|24213347|ref|NP_710828.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601] gi|45658771|ref|YP_002857.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24194095|gb|AAN47846.1|AE011251_8 rRNA methylase [Leptospira interrogans serovar Lai str. 56601] gi|45602015|gb|AAS71494.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 153 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 2/64 (3%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATS--MAHLHMPGIIKALNVSNAAAVALYITQ 277 A + G E G+ + + + + + M + LN+SN+ AV Y Sbjct: 88 YTNVSYRKGDAFLFGNETSGVPLEIKNSWDQERILKIPMEDSSRCLNLSNSVAVISYEAM 147 Query: 278 NHFA 281 Sbjct: 148 RQIK 151 >gi|332796504|ref|YP_004458004.1| RNA methyltransferase, TrmH family, group 1 [Acidianus hospitalis W1] gi|332694239|gb|AEE93706.1| RNA methyltransferase, TrmH family, group 1 [Acidianus hospitalis W1] Length = 228 Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 27/63 (42%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 L +K++KIALI G E GL + A + + LN+S+A + LY Sbjct: 91 FPWELPSVMKSEKIALIFGRESVGLTREEISKADFLLFIPANPNYPTLNLSHAVGIVLYE 150 Query: 276 TQN 278 Sbjct: 151 IWK 153 >gi|324521326|gb|ADY47830.1| RRNA methyltransferase 1 [Ascaris suum] Length = 334 Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 80/231 (34%), Gaps = 23/231 (9%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---------PVKTVPPQ 99 +YG + V AL R I++L A + L R D + +K + Sbjct: 77 EIVYGTYPVLEALKANRRSIYKLFAKASVLGRAKQDDIIAKKILRLANDSGVDIKALNAD 136 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAF 157 +D + + +H GL ++ +PL L + + LD V DP NIGAI+RS F Sbjct: 137 QLDVLTEYQ-LHNGLCIDASPLSYEVLCDEDIVNAKIFLYLDKVLDPGNIGAIIRSCFYF 195 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL----- 212 DG+I + P AS + + +K Sbjct: 196 RIDGVILARDQGPKTLTAAMSKASAGALERFPVYTVEDFPSFRKRLRNVGFKFIATSDEN 255 Query: 213 ------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 + + NDK+ +ILG EG+G+ + + Sbjct: 256 SAITKGYQSPIRLPDFRPINDKVVIILGDEGRGIATDILSQCDYIVQIPTS 306 >gi|281211833|gb|EFA85995.1| TAR RNA loop binding protein [Polysphondylium pallidum PN500] Length = 1614 Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 2/168 (1%) Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + + A QL++V V+ N+ + R++ F+ + ++ +K+ ++ Sbjct: 1441 PWNDVEDETRYNIMARTRQQLIIVATFVDKIPNLAGLARTSEIFNVESLVVSKKKVANDP 1500 Query: 174 AVLAKSASGALE--HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 S S L K + + L + +K L Sbjct: 1501 MFQQISVSAERWLPMTEVEEHQLREYLLSKKQEGYTLLGVEQTSTSSQLNEYKFPEKAVL 1560 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +LG E +G+ + + GII++LNV + ++ ++ Sbjct: 1561 LLGKEKEGIPTEYINLLDKCIEIPQLGIIRSLNVHVSGSILMWEYTKQ 1608 >gi|295687973|ref|YP_003591666.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756] gi|295429876|gb|ADG09048.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756] Length = 152 Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 48/144 (33%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L P N+GA +R + F + P + L ++A R + Sbjct: 3 IALFQPGIPQNVGAAIRLSACFGVGLDVIEPCSFPLDDKSLKRAALDYGPLAHLKRHDSW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 L+ + + ++ P + L+ G E +G + + Sbjct: 63 GAFLKAPERVDGRLLLFTTRGATPFHRFEFAPGDTLLFGNESRGAPEEVHAAVHGRIIIP 122 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 + +++N++ AA+AL Sbjct: 123 IRPETRSMNLATTAAMALGEALRQ 146 >gi|254445462|ref|ZP_05058938.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium DG1235] gi|198259770|gb|EDY84078.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium DG1235] Length = 154 Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 4/151 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I R+ + + L +S + + Sbjct: 1 MLHVVLFQPEIPQNTGNIGRTCAITESRLHLIHPLGFVIKDKHLKRSGMDYWKSLDVHHH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + + +P + L+ G EG G + Sbjct: 61 ESWEAFKASDVGPKRLFLFTTKS-SQPYWDVQYEEGDGLLFGNEGHGAPDWLHDEVGEDR 119 Query: 251 MAHLHMPGII-KALNVSNAAAVALYITQNHF 280 ++ ++LN++ AA VA + Sbjct: 120 RLNIPQYNSSLRSLNLATAAGVATFEVMRQL 150 >gi|152990479|ref|YP_001356201.1| tRNA/rRNA methyltransferase [Nitratiruptor sp. SB155-2] gi|151422340|dbj|BAF69844.1| tRNA/rRNA methyltransferase [Nitratiruptor sp. SB155-2] Length = 156 Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 1/82 (1%) Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGII 260 + + ++ S KP Q L G+E KGL + E + M Sbjct: 68 HNCNLSRAFFATTKSSKPYFQVQYQPGDFLFFGSETKGLPMELMEKHWEHAVTIPMTKEG 127 Query: 261 KALNVSNAAAVALYITQNHFAK 282 ++LN++ + V +Y K Sbjct: 128 RSLNLAVSVGVIVYEGIRQNFK 149 >gi|29027480|gb|AAO61955.1| rRNA methylase [Aster yellows phytoplasma] Length = 78 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 1/65 (1%) Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH-MPGIIKALNVSNAAAVALYI 275 + A ILG+E KG+ + L + + +LNVS A LY Sbjct: 11 DYICYNINYRNPTAFILGSEEKGISINYLSICNNRVKLPLIKNSLTSLNVSVACGAILYE 70 Query: 276 TQNHF 280 Sbjct: 71 AIRQR 75 >gi|152977823|ref|YP_001343452.1| RNA methyltransferase [Actinobacillus succinogenes 130Z] gi|150839546|gb|ABR73517.1| RNA methyltransferase, TrmH family, group 2 [Actinobacillus succinogenes 130Z] Length = 158 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + T + L++ + L+ G E +G+ + Sbjct: 59 RHKTFERFIESEKPKRLFALTTKGGPAHSEVRFESGDFLMFGPETRGIPMSILDNMPMER 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AVA+Y Sbjct: 119 KIRIPMTANSRSMNLSNSVAVAVYEAWRQL 148 >gi|291166114|gb|EFE28160.1| RNA methyltransferase, TrmH family, group 2 [Filifactor alocis ATCC 35896] Length = 156 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 5/152 (3%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I+R+ + E L ++ L+ + Sbjct: 1 MAINIVLIEPEIPSNTGNIIRTCACTGSRLHLIRPLGFSMEEKKLRRAGLDYLDLVEICY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 + + +K + F S+ D+ L+ G E KG+ + A Sbjct: 61 YDSFEELEEKYPNAEFFMYSTKSNRNHTD--VRYEDECFLVFGKETKGISDSILDRYADC 118 Query: 251 MAHLHMPG--IIKALNVSNAAAVALYITQNHF 280 M + M ++ LN+SN+ A+ +Y Sbjct: 119 MVRIPMLNEERMRCLNLSNSVAIGIYEVIRQL 150 >gi|170751421|ref|YP_001757681.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans JCM 2831] gi|170657943|gb|ACB26998.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans JCM 2831] Length = 291 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 87/251 (34%), Gaps = 13/251 (5%) Query: 38 QKSRHTS---QPENLFLYGVHTVSAALNNPSRKI---FQLLATKNALARLDWDANL-PHP 90 + R + + G V+ L R +L L D P P Sbjct: 20 TRMRERDLVGRAGRFIVEGE--VTLRLLLGRRSRFRAESILLAPERWPGLAADVAACPEP 77 Query: 91 FPVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 P+ + + + G V + + L++ L + + N+ Sbjct: 78 PPIYSASKAVMSAVTGFPIHRGVLAVGLRGPGLDAAALVPPPPAPALVVGLAGLTNHDNV 137 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GA R+A AF D ++ + ++GA P+ R+ + D L+ + Sbjct: 138 GAAFRNAAAFGADAVLLDGATCDPLYRKSIRVSAGAALIQPFARLPDGQDWLRLAETLDL 197 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + S + + L+ + LILG EG GL T A + M +LNV+ Sbjct: 198 RPLAFSPGASETLDARAAPPRALLILGTEGPGLDAATLARA-RPIRIPMAAGFDSLNVAT 256 Query: 268 AAAVALYITQN 278 AA +ALY Sbjct: 257 AAGIALYTIAR 267 >gi|253681869|ref|ZP_04862666.1| RNA methyltransferase TrmH, group 2 [Clostridium botulinum D str. 1873] gi|253561581|gb|EES91033.1| RNA methyltransferase TrmH, group 2 [Clostridium botulinum D str. 1873] Length = 160 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 54/155 (34%), Gaps = 3/155 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L +VL P N G I R+ V + + + + ++ ++ Sbjct: 1 MSDTPNLNIVLFEPEIPQNTGNIGRTCVLTNSKLHLIKPLGFNIDDKSVKRAGLDYWPYL 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE- 246 + D ++K + + ++K ++ + + ++ G E GL ++ Sbjct: 61 KLEIHESFDDMIRKY-PDANIYLSTTKEAKYHHDEVNYKEGVFIVFGRESSGLPDYIRDR 119 Query: 247 TATSMAHLHMPGII-KALNVSNAAAVALYITQNHF 280 + + M ++LN+SN ++ Y Sbjct: 120 YIENRIRVPMIKTTMRSLNLSNTVSIVAYEALRQL 154 >gi|120434617|ref|YP_860307.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117576767|emb|CAL65236.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 178 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 70/159 (44%), Gaps = 3/159 (1%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 + ++++LD+V +NIG++ RSA AF I + + K+A GA + Sbjct: 19 FKKAEKTPIIVILDNVRSLNNIGSVFRSADAFLIQKIYLCGITAQPPHKDIQKTALGATD 78 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRP 242 + + + N ++K+ + G + + + + +K A++ G E KG++ Sbjct: 79 TVTWEYVENTVSLVKKLKAEGIKVYAIEQAEGATMLNDFVPEKHQTTAVVFGNEVKGVQQ 138 Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + ++ + G +LN+S + V L+ + Sbjct: 139 EVVSASDAVIEIPQLGSKHSLNISVSTGVVLWDLFSKLK 177 >gi|332968421|gb|EGK07488.1| TrmH family RNA methyltransferase [Kingella kingae ATCC 23330] Length = 154 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R CD + P +S+ + ++ H Sbjct: 1 MFTVVLYQPEIPPNTGNIIRLCANTGCDLHLVKPLGFPLDSSKMKRAGLDY--HEFSQLT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + + G + L++ +Q + G E +GL + + Sbjct: 59 VHESWQDCWAALQGKRIFALTTKGSTRPDQVAFQAGDVFLFGPETRGLPTDILASLPSEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 M +++N+SN A+ ++ Sbjct: 119 KIRFPMMPDNRSMNLSNTVAITVFEAWRQ 147 >gi|332295004|ref|YP_004436927.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM 14796] gi|332178107|gb|AEE13796.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM 14796] Length = 149 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 1/100 (1%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 G T + S K + + + LI G E GL Sbjct: 47 GMDYWKHLDFTFYPTFEEARAVFDQNDIFLFSPSGKNIYTKGRYSKESILIFGKESMGLD 106 Query: 242 PKTQETATSMAH-LHMPGIIKALNVSNAAAVALYITQNHF 280 + + + M ++LN++N+ A+ LY Sbjct: 107 KNILQEFEEKTYFIPMKKEARSLNLANSVAIVLYEALRQI 146 >gi|219685293|ref|ZP_03540112.1| tRNA/rRNA methyltransferase [Borrelia garinii Far04] gi|219673066|gb|EED30086.1| tRNA/rRNA methyltransferase [Borrelia garinii Far04] Length = 218 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 1/154 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R + L VL+ + P N A +R+ + + + + + + Sbjct: 30 CRTNYLTFVLEDIFQPQNASATIRTGEILGLSDVHIISKRNKC-TLNPDVTLGSSQWINL 88 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + + LE N+K+A+ G E GL + E A Sbjct: 89 NRYNNTKFALDRLKSDGYSIVATSLDEQSINLEDFPINNKMAVFFGTELTGLSAEAFEAA 148 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G ++ N+S A A+ +Y K Sbjct: 149 DLYLKIPMHGFTQSYNISVAVAIVMYSLSIRLRK 182 >gi|88858499|ref|ZP_01133141.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Pseudoalteromonas tunicata D2] gi|88820116|gb|EAR29929.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Pseudoalteromonas tunicata D2] Length = 249 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 24/70 (34%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + L K +AL+ G E GL + + + +LN++ Sbjct: 89 WPMVEPRECGQMLVDGAKKGPVALVFGRENSGLSNEELQMCHYHVCIPANPEYSSLNLAM 148 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 149 AVQTLTYEVR 158 >gi|167031897|ref|YP_001667128.1| RNA methyltransferase [Pseudomonas putida GB-1] gi|166858385|gb|ABY96792.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida GB-1] Length = 251 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 IALVFGREHAGLTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVR 158 >gi|104780226|ref|YP_606724.1| TrmH family tRNA methyltransferase [Pseudomonas entomophila L48] gi|95109213|emb|CAK13910.1| putative tRNA/rRNA methyltransferase, TrmH family, group 1 [Pseudomonas entomophila L48] Length = 251 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 IALVFGREHAGLTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVR 158 >gi|26987575|ref|NP_743000.1| RNA methyltransferase [Pseudomonas putida KT2440] gi|24982250|gb|AAN66464.1|AE016275_9 RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida KT2440] Length = 251 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 IALVFGREHAGLTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVR 158 >gi|333029529|ref|ZP_08457590.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM 18011] gi|332740126|gb|EGJ70608.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM 18011] Length = 176 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 3/160 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + +++LD++ +N+G++ R+A AF + I S A + K+A GA Sbjct: 17 EFKEIDKVPFIVILDNIRSMYNVGSVFRTADAFRLEKIYLCGITSVPPHAEIHKTALGAE 76 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241 E + + I + + ++ G+ + + E KN KIA+++G E KG++ Sbjct: 77 ESVDWEYIEDTVHIVDRLKEEGYTVFSIEQAEGSTMLNELELQKNQKIAIVMGNEVKGVQ 136 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + + G ++NVS + ++ N Sbjct: 137 QEVINHSNGCIEIPQYGTKHSMNVSVTTGIVIWDLFNKII 176 >gi|332162657|ref|YP_004299234.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606763|emb|CBY28261.1| tRNA:Cm32/Um32 methyltransferase [Yersinia enterocolitica subsp. palearctica Y11] gi|325666887|gb|ADZ43531.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859249|emb|CBX69599.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia enterocolitica W22703] Length = 257 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A + Y + Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157 >gi|238765526|ref|ZP_04626442.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia kristensenii ATCC 33638] gi|238696265|gb|EEP89066.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia kristensenii ATCC 33638] Length = 257 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A + Y + Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157 >gi|170023520|ref|YP_001720025.1| RNA methyltransferase [Yersinia pseudotuberculosis YPIII] gi|169750054|gb|ACA67572.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pseudotuberculosis YPIII] Length = 257 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A + Y + Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157 >gi|163786061|ref|ZP_02180509.1| RNA methyltransferase, TrmH family, group 2 [Flavobacteriales bacterium ALC-1] gi|159877921|gb|EDP71977.1| RNA methyltransferase, TrmH family, group 2 [Flavobacteriales bacterium ALC-1] Length = 151 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 2/98 (2%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PK 243 I + + + + LSS K + + L+ G E GL P Sbjct: 52 YWQHLEVIYYNSIDDFFLKNKDSIMVFLSSQGKVSHWDINYTENMFLVFGKESVGLPKPL 111 Query: 244 TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHF 280 ++ + + + I++LN++NA ++ +Y Sbjct: 112 IEKHKDQLFKIPLYSKDIRSLNLANAVSIIVYEGLRQL 149 >gi|123441400|ref|YP_001005387.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166234838|sp|A1JKQ0|TRMJ_YERE8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|122088361|emb|CAL11152.1| putative SpoU-family rRNA methylase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 257 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A + Y + Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157 >gi|238788189|ref|ZP_04631984.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia frederiksenii ATCC 33641] gi|238723776|gb|EEQ15421.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia frederiksenii ATCC 33641] Length = 256 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A + Y + Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157 >gi|238784221|ref|ZP_04628234.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia bercovieri ATCC 43970] gi|238714930|gb|EEQ06929.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia bercovieri ATCC 43970] Length = 257 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A + Y + Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157 >gi|22125231|ref|NP_668654.1| ATP synthase beta subunit [Yersinia pestis KIM 10] gi|45442336|ref|NP_993875.1| SpoU family rRNA methylase [Yersinia pestis biovar Microtus str. 91001] gi|51597177|ref|YP_071368.1| SpoU family rRNA methylase [Yersinia pseudotuberculosis IP 32953] gi|108808333|ref|YP_652249.1| SpoU family rRNA methylase [Yersinia pestis Antiqua] gi|108811402|ref|YP_647169.1| SpoU rRNA methylase family [Yersinia pestis Nepal516] gi|145599515|ref|YP_001163591.1| SpoU rRNA methylase family [Yersinia pestis Pestoides F] gi|149365357|ref|ZP_01887392.1| putative SpoU-family rRNA methylase [Yersinia pestis CA88-4125] gi|153947216|ref|YP_001400147.1| RNA methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|162420842|ref|YP_001605042.1| RNA methyltransferase [Yersinia pestis Angola] gi|165928245|ref|ZP_02224077.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Orientalis str. F1991016] gi|166008335|ref|ZP_02229233.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Antiqua str. E1979001] gi|166212473|ref|ZP_02238508.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Antiqua str. B42003004] gi|167399653|ref|ZP_02305177.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421340|ref|ZP_02313093.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423345|ref|ZP_02315098.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470018|ref|ZP_02334722.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis FV-1] gi|186896271|ref|YP_001873383.1| RNA methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|218929957|ref|YP_002347832.1| putative SpoU family rRNA methylase [Yersinia pestis CO92] gi|229838482|ref|ZP_04458641.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895487|ref|ZP_04510658.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Pestoides A] gi|229899051|ref|ZP_04514195.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229901656|ref|ZP_04516778.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Nepal516] gi|270489848|ref|ZP_06206922.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis KIM D27] gi|294504542|ref|YP_003568604.1| putative SpoU-family rRNA methylase [Yersinia pestis Z176003] gi|81638848|sp|Q667X9|TRMJ_YERPS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|122383052|sp|Q1C5G8|TRMJ_YERPA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|122384969|sp|Q1CKB1|TRMJ_YERPN RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|123776962|sp|Q7CJN8|TRMJ_YERPE RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|166234839|sp|A4TMV6|TRMJ_YERPP RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|21958100|gb|AAM84905.1|AE013736_1 putative ATP synthase beta subunit [Yersinia pestis KIM 10] gi|45437200|gb|AAS62752.1| putative SpoU-family rRNA methylase [Yersinia pestis biovar Microtus str. 91001] gi|51590459|emb|CAH22099.1| putative SpoU-family rRNA methylase [Yersinia pseudotuberculosis IP 32953] gi|108775050|gb|ABG17569.1| SpoU-family rRNA methylase [Yersinia pestis Nepal516] gi|108780246|gb|ABG14304.1| putative SpoU-family rRNA methylase [Yersinia pestis Antiqua] gi|115348568|emb|CAL21509.1| putative SpoU-family rRNA methylase [Yersinia pestis CO92] gi|145211211|gb|ABP40618.1| SpoU-family rRNA methylase [Yersinia pestis Pestoides F] gi|149291770|gb|EDM41844.1| putative SpoU-family rRNA methylase [Yersinia pestis CA88-4125] gi|152958711|gb|ABS46172.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pseudotuberculosis IP 31758] gi|162353657|gb|ABX87605.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis Angola] gi|165919752|gb|EDR37085.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Orientalis str. F1991016] gi|165992717|gb|EDR45018.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Antiqua str. E1979001] gi|166206404|gb|EDR50884.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Antiqua str. B42003004] gi|166960829|gb|EDR56850.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052157|gb|EDR63565.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057515|gb|EDR67261.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699297|gb|ACC89926.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pseudotuberculosis PB1/+] gi|229681585|gb|EEO77679.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Nepal516] gi|229687996|gb|EEO80068.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229694848|gb|EEO84895.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701293|gb|EEO89321.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Pestoides A] gi|262362465|gb|ACY59186.1| putative SpoU-family rRNA methylase [Yersinia pestis D106004] gi|262366530|gb|ACY63087.1| putative SpoU-family rRNA methylase [Yersinia pestis D182038] gi|270338352|gb|EFA49129.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis KIM D27] gi|294355001|gb|ADE65342.1| putative SpoU-family rRNA methylase [Yersinia pestis Z176003] gi|320016041|gb|ADV99612.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 257 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A + Y + Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157 >gi|259506650|ref|ZP_05749552.1| SpoU rRNA methylase family protein [Corynebacterium efficiens YS-314] gi|259165848|gb|EEW50402.1| SpoU rRNA methylase family protein [Corynebacterium efficiens YS-314] Length = 133 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPK--TQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 AL+ G E GL + T+ + M +++N+SN+AAVA Y Sbjct: 64 WFTDITYQPGDALLFGTEPTGLPHEHIIHPRVTAEVRIPMLEGRRSMNLSNSAAVATYEA 123 Query: 277 QNHF 280 Sbjct: 124 WRQL 127 >gi|290988988|ref|XP_002677151.1| predicted protein [Naegleria gruberi] gi|284090757|gb|EFC44407.1| predicted protein [Naegleria gruberi] Length = 300 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 92/292 (31%), Gaps = 20/292 (6%) Query: 3 LISKKKSEKIFSLKD--SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 +IS K + I + Y+K + + + Q F + + + + G + A Sbjct: 12 IISSKVNPIIKECIKIRTKYSKNFKKCFTFDQPQVFKGEEGIQYKSLPMLMNGSKIIREA 71 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETA 119 + KI ++ + I+ I G + G + Sbjct: 72 --SEKYKIEPKWLFYSS--EQSEIKFKSNDIQYYQTNDNLINHICGDIVSNDGYCAVYDN 127 Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + + + + V+DP+N+G+I+R + F I ++ + +S Sbjct: 128 YNPFKLFENKKKRNVYIYCYKVSDPNNLGSIIRMSFGFDIKAIFLSEDCVSPFTERSIRS 187 Query: 180 ASGAL-----EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + + H+P + K + + + LI+G Sbjct: 188 SRNYILNIPVFHLPLKDYKTIIYDQLKCKKSLIADASTDRKTPIQNLNDSNEGDVCLIIG 247 Query: 235 AEGKGLRPK--------TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 E G E ++ M + +++VS+AA++ ++ Sbjct: 248 NEHHGFCDDDFKSILLPQLENQYEGIYIPMKNNLDSISVSHAASILMFELTK 299 >gi|220906581|ref|YP_002481892.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 7425] gi|219863192|gb|ACL43531.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 7425] Length = 262 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + ALI G E +GL A + + I +LN++ A AV Y Sbjct: 109 PWLLGHPAALIFGREDRGLTNTELNYAQRLIRIPTDPIYPSLNLAQAVAVCSYELYQQ 166 >gi|189913162|ref|YP_001965050.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|189913499|ref|YP_001964727.1| Putative rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167777838|gb|ABZ96137.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781567|gb|ABZ99863.1| Putative rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 261 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 56 TVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115 V L + + K + + V Q+I + VHQG Sbjct: 36 AVR-LLLSNFEVVSVFCTEKYWQKHKNLIDSKLKDEEKCYVADQSIFEETIGFHVHQGFM 94 Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + D + +++++ + D NIG+ILR+A AF I+ + + Sbjct: 95 AVGKQKWAKEED---LTFPILIINAIVDSENIGSILRNAAAFGIKSILFDSKSASPYLRR 151 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQ--------TIGLSSDSKKPLEQEIKND 227 + + GA+ + + +NL D++Q++ K +++ K + Sbjct: 152 SVRVSMGAIFQLQLAKTTNLPDSIQRLKERPTNLVALALPKENSHHLSKTKTIQEIGKLE 211 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + LI+G E G+ + + + ++ M I +LNVS+A AVAL Sbjct: 212 NLVLIVGNEANGIEEGVLDASDVIGYIPMQNNIDSLNVSHALAVALSHL 260 >gi|269955191|ref|YP_003324980.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM 15894] gi|269303872|gb|ACZ29422.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM 15894] Length = 168 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L+ G E GL P + T L M ++LN++NAA++A Y Sbjct: 105 YQPGDVLLFGPEPTGLPPSVLDHPRITERVVLPMLPGRRSLNLTNAASIATYEAWRQL 162 >gi|222823606|ref|YP_002575180.1| rRNA methylase, SpoU family [Campylobacter lari RM2100] gi|222538828|gb|ACM63929.1| rRNA methylase, SpoU family [Campylobacter lari RM2100] Length = 155 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 51/148 (34%), Gaps = 2/148 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G+I R I + + ++ + + + Sbjct: 1 MFHIVLVEPRIPQNTGSIGRMCFNAGFTLHIINP-LFSIDEKAVKRAGLDYWKKLNPMLW 59 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSM 251 +NL D L+K + + ++ + + + L G+E GL + + + Sbjct: 60 NNLEDFLKKYEKFQDRFFFATTKTTQAYFDVKFQEGDFLFFGSESFGLPEQLMQKNWKNA 119 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ + + Y Sbjct: 120 ITIPMKDCGRSLNLATSVGIVSYEALRQ 147 >gi|313676389|ref|YP_004054385.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126] gi|312943087|gb|ADR22277.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126] Length = 181 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 3/154 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 V+ + +++VLD+V +N+G+ R+ AF + I + + K+A GA Sbjct: 16 EFKKVKKNPIVLVLDNVRSMNNVGSAFRTGDAFLIEKIYLCGITAQPPHREINKTALGAT 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLR 241 E + + N DA+ K+ G++ + + ++ K A I G E G+ Sbjct: 76 ETVEWEHFENTLDAVAKLKQDGYKIMSVEQAENSLSLEKFAPKADEKYAFIFGNEVYGVE 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + + + G +LN+S + V L+ Sbjct: 136 QEVVDQSDHCLEIPQFGTKHSLNISVSIGVVLWH 169 >gi|254447561|ref|ZP_05061027.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium HTCC5015] gi|198262904|gb|EDY87183.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium HTCC5015] Length = 159 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 41/152 (26%), Gaps = 5/152 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L P N G I+R + + L ++ E Sbjct: 1 MFHIALYQPEIPPNTGNIIRLCANTGFQLHLIHPLGFELDDKRLRRAGLDYHEFASVREH 60 Query: 193 SNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA- 248 + + G L + ++ + + G E +GL + Sbjct: 61 ESWEAFCRDFVQGGDANHRLFALSTRGRQRYSDVAFREGDVFLFGPETRGLPQDILDDLP 120 Query: 249 -TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AV Y Sbjct: 121 EAQRLRLPMRASGRSLNLSNTVAVLGYEAWRQ 152 >gi|238753893|ref|ZP_04615253.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia ruckeri ATCC 29473] gi|238707881|gb|EEQ00239.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia ruckeri ATCC 29473] Length = 257 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A + Y + Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157 >gi|330444101|ref|YP_004377087.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58] gi|328807211|gb|AEB41384.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58] Length = 152 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 1/62 (1%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH-LHMPGIIKALNVSNAAAVALYITQ 277 K + G+E KGL + + + M ++LN++ + LY Sbjct: 84 YYAHASLPLKGTFVFGSESKGLPQEVLNAYHEQCYFVPMLQGTRSLNLATTVGIVLYEVI 143 Query: 278 NH 279 Sbjct: 144 RQ 145 >gi|325293605|ref|YP_004279469.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3] gi|325061458|gb|ADY65149.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3] Length = 157 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 47/144 (32%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + P N G ILR A I L ++ + R + Sbjct: 10 IALYQPDIPGNTGTILRLAACLGLGVDIIEPAGFDISDRNLKRAGMDYIAAAALTRHVSW 69 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + G + + S+ + P + L+ G E G+ E A + Sbjct: 70 DRFEEWRATTGRRLVLASTKAALPYTKIAYRHDDILLFGRESAGVPDHVHEKAQERIIIP 129 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 M +++NV+ +AA+ Sbjct: 130 MVEGQRSINVAMSAAMITGEALRQ 153 >gi|325955086|ref|YP_004238746.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922] gi|323437704|gb|ADX68168.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922] Length = 177 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 66/156 (42%), Gaps = 6/156 (3%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + +++VLD++ HN+GA+ R+A AF + + + + K+A GA E Sbjct: 18 KNIEKIPVVVVLDNIRSMHNVGAVFRTADAFLIEKVYLCGITATPPHKEIHKTAIGATES 77 Query: 187 IPYIRISNLTDALQKMHSWGF---QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + + N + ++K+ + + + P + + K A+++G E G++ + Sbjct: 78 VDWEYEENALNLIEKLRKDNYSIVCIEQVENSISFPEYEVDPSRKYAIVMGNEVDGVQQE 137 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL---YIT 276 + + G +LNVS + L Y Sbjct: 138 IIDKTDVCLEIPQSGTKHSLNVSVCTGIVLWKWYEA 173 >gi|313206520|ref|YP_004045697.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM 15868] gi|312445836|gb|ADQ82191.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM 15868] gi|315023539|gb|EFT36543.1| RNA methylase, SpoU family protein [Riemerella anatipestifer RA-YM] gi|325336032|gb|ADZ12306.1| rRNA methylase [Riemerella anatipestifer RA-GD] Length = 176 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 3/153 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 T + L++VLD++ HN+GA+ R+A AF + I+ + K+A GA Sbjct: 17 TFKKTSKTPLVVVLDNIRSMHNVGALFRTADAFLIEKIVLCGITPQPPHREIHKAALGAT 76 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP---LEQEIKNDKIALILGAEGKGLR 241 E + ++ ++++A++++ + G+ IG+ + + N K AL+LG E +GL Sbjct: 77 ESVDWVYQKDISEAIKELKTQGYNIIGVEQTTDSISLSDFEINPNQKYALVLGNEVEGLS 136 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G +LNVS + ++ Sbjct: 137 DEALPLYDNFIEIPQLGTKHSLNVSVCGGIVIW 169 >gi|86142668|ref|ZP_01061107.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] gi|85830700|gb|EAQ49158.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] Length = 175 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 28/53 (52%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 KIAL+LG E G+ + ++ M G ++NVS AAA+A Y N+ Sbjct: 118 KKIALVLGHERYGICEDVLNILDHITYIPMRGKNSSMNVSQAAAIAAYQLINN 170 >gi|319787464|ref|YP_004146939.1| RNA methyltransferase, TrmH family, group 1 [Pseudoxanthomonas suwonensis 11-1] gi|317465976|gb|ADV27708.1| RNA methyltransferase, TrmH family, group 1 [Pseudoxanthomonas suwonensis 11-1] Length = 267 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 22/51 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + + H+ +LN++ A V Y + Sbjct: 121 GPVALVFGRERTGLTNEELQLCHASVHIPSDPAFSSLNLAAAVQVLAYELR 171 >gi|241690481|ref|XP_002411769.1| conserved hypothetical protein [Ixodes scapularis] gi|215504608|gb|EEC14102.1| conserved hypothetical protein [Ixodes scapularis] Length = 227 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 4/77 (5%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-T---SMAHLHMPGIIKAL 263 + L++G E +GL + + A S H+ +++L Sbjct: 133 CRQVVLPCHDYTAVTYPARRPSVLVVGGEAQGLSTQAHKLAVDCGGSRVHVPSDNEVESL 192 Query: 264 NVSNAAAVALYITQNHF 280 N + AA++ L+ + Sbjct: 193 NTAVAASIILFEMRRQI 209 >gi|297588471|ref|ZP_06947114.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516] gi|297573844|gb|EFH92565.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516] Length = 155 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 50/150 (33%), Gaps = 3/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I R+ V + + + +L +S + + + Sbjct: 1 MLNIVLLEPEKPSNTGNIGRTCVLTNSRLHLVRPFSFRLDDKLLKRSGMDYWDKVDLVIH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 ++ D + + + + + + D + G E G+ + Sbjct: 61 DDM-DEFLEYIKGNDRVFYVETFATNYYHELEYQDGDFFVFGKESSGIDKDLVDKHKDHS 119 Query: 252 AHLHMPGIIK-ALNVSNAAAVALYITQNHF 280 + M I +LN++N+ + L+ Sbjct: 120 IKIPMNMTIDRSLNLANSCNIVLFEALRQI 149 >gi|255323955|ref|ZP_05365081.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium tuberculostearicum SK141] gi|311739965|ref|ZP_07713799.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|255299135|gb|EET78426.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium tuberculostearicum SK141] gi|311305038|gb|EFQ81107.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 156 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 4/152 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 SQL +V D+ P N G +R+A + + L ++ H Sbjct: 1 MSQLHIVFDNPVIPTNTGNAIRTAAVTGASLHLIEPLGFNFDDKHLKRAGLDY--HDLAD 58 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--A 248 + G + ++ + K + L+ G E GL + Sbjct: 59 VQIHKDFQACMDALPGARVFAFTTHTDKWFTDIEYQEGDVLLFGTEPTGLPEEHINHPRV 118 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T + M +++N+SN+A+ A++ Sbjct: 119 TDRVRIPMVPARRSMNLSNSASTAVFEAWRQL 150 >gi|124802753|ref|XP_001347584.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7] gi|23495166|gb|AAN35497.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7] Length = 257 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 2/148 (1%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D+ + +V+ ++ N+G I+RS VAF+ I + + + Sbjct: 46 DSYEKIKTYVVIYNIGKKKNVGCIVRSCVAFNVHKIFIVGKRKKEINFFGNMGTYDYI-T 104 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 I Y H +S ++ ++ A + G EG G+ + Sbjct: 105 IEYFDNIYELKEYLTKHDILLYACEISVNALSITTNPYEHKDTAFLFGNEGTGIHDNVLK 164 Query: 247 TATSMAHLHMPGI-IKALNVSNAAAVAL 273 + ++ G +LNVS + A+ L Sbjct: 165 ICDKIIYIPQYGKGTASLNVSVSCAIIL 192 >gi|326384122|ref|ZP_08205805.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] gi|326197282|gb|EGD54473.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] Length = 231 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279 + L+ G EG G+ +TQ+ A + G +++N AA + ++ H Sbjct: 169 LPRRALLVFGQEGPGVSDETQDRADLTVSIAQFGSTRSINAGVAAGIVMHSWIARH 224 >gi|251788732|ref|YP_003003453.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591] gi|247537353|gb|ACT05974.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591] Length = 249 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 25/71 (35%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + QE + +A++ G E GL + + + +LN++ Sbjct: 87 PWPMLEPRECGVRSIQEAQRAPVAIVFGRERVGLTNEELQKCHYHVAIPANPEYSSLNLA 146 Query: 267 NAAAVALYITQ 277 A + Y + Sbjct: 147 MAVQILSYEVR 157 >gi|237745860|ref|ZP_04576340.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes HOxBLS] gi|229377211|gb|EEO27302.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes HOxBLS] Length = 259 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K AL+ G+E GL + E ++ ++ +LN++ A V Y + Sbjct: 116 KKKPCALVFGSERYGLPNEVVEQCQALINIPANPAYSSLNLAQAIQVLAYECR 168 >gi|315605817|ref|ZP_07880849.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315312515|gb|EFU60600.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 242 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQN 278 K L+ G+E GL + + + G +++NV +AAA+ ++ Sbjct: 182 LPAKACLVFGSEALGLSEEMLAACDVVVAVTQRGSTRSMNVGHAAAIVMWAHATR 236 >gi|29654438|ref|NP_820130.1| RNA methyltransferase [Coxiella burnetii RSA 493] gi|29541705|gb|AAO90644.1| rRNA methylase, SpoU family [Coxiella burnetii RSA 493] Length = 240 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 23/69 (33%) Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 L + + + IA++ G E GL + + +LN++ A Sbjct: 87 PWPLKTPRECAEQSVQHQGNIAIVFGRERSGLTNEELAQCQYHVTIPTEAAFSSLNLAQA 146 Query: 269 AAVALYITQ 277 + Y + Sbjct: 147 VQILTYEIR 155 >gi|219684874|ref|ZP_03539816.1| tRNA/rRNA methyltransferase [Borrelia garinii PBr] gi|219671819|gb|EED28874.1| tRNA/rRNA methyltransferase [Borrelia garinii PBr] Length = 218 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 N+K+A+ G E GL + E A + M G ++ N+S A A+ +Y K Sbjct: 126 NNKMAVFFGTELTGLSAEAFEAADLYLKIPMYGFTQSYNISVAVAIVMYSLSIRLRK 182 >gi|326931469|ref|XP_003211851.1| PREDICTED: RNA methyltransferase-like protein 1-like, partial [Meleagris gallopavo] Length = 375 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 4/69 (5%) Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSNAAAVAL 273 + + A+++G E GL P A + + + +LN + AAA+ L Sbjct: 291 QYYYENWMRSPAAVVVGGETHGLSPDALHLAASTGGKRLVIPVVPGVDSLNSAVAAAIVL 350 Query: 274 YITQNHFAK 282 + + + Sbjct: 351 FEGKRQLQR 359 Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 2/176 (1%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 Y K R K+ + + + + L G + AL + L + Sbjct: 42 YEKASPGDRSLGKVVTIAKSRSFRDRHGKVLLEGQRLIRDALEAGAVP-RALFFSTALHL 100 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 R A L + V + I A + + + P + L+++ D Sbjct: 101 RELPSAPL-KGARLVRVRFEDIKCWSDVVAPQGMIGIFSKPDHAKMSYPAAQLPLVLICD 159 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++ DP N+G ILRSA C+ ++ TK + ++ GA +P + + Sbjct: 160 NIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVLRAGMGAHFRVPIVANLDW 215 >gi|260584367|ref|ZP_05852114.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC 700633] gi|260157885|gb|EEW92954.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC 700633] Length = 169 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 2/146 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + + + ++ L ++ + +L Sbjct: 6 IVLFEPQIPANTGNIARTCAATNSPLHLVGQLGFSTDDKHLKRAGLDYWNDVDITYHDSL 65 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 ++ + + I ++ K+++ I G E GL + +E S L Sbjct: 66 EAFMEYLGNRPIYLITKFANHTYDEVDLAKDEEQFFIFGKETTGLPEEFMREHEESCLRL 125 Query: 255 HMPGI-IKALNVSNAAAVALYITQNH 279 M +++LN+SN AA+ +Y Sbjct: 126 PMNDTHVRSLNLSNTAAIVVYEALRQ 151 >gi|225012277|ref|ZP_03702714.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-2A] gi|225003832|gb|EEG41805.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-2A] Length = 174 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 3/153 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + L+++LD++ +NIG++ R+A AF + I + + K+A GA Sbjct: 16 DFKQADKTPLILILDNIRSLNNIGSVFRTADAFLIEKIYLCGITATPPHKDIHKTALGAT 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLR 241 E++ + N + +QK+H + K + K A ILG E +G+ Sbjct: 76 ENVAWEYAENTLEVVQKLHKENVSVWAIEQTEKAIFLDSFQPKKNTRHAFILGNEVRGVS 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + + G +LN+S A V ++ Sbjct: 136 QEAVDACGQALEIPQFGTKHSLNISVATGVVVW 168 >gi|326329782|ref|ZP_08196102.1| TsnR [Nocardioidaceae bacterium Broad-1] gi|325952368|gb|EGD44388.1| TsnR [Nocardioidaceae bacterium Broad-1] Length = 172 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 44/147 (29%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L++ V N+G +LR+ A + ++ + Sbjct: 20 HSCWDHLVVAPLWVAYEANLGTLLRTCDAIGACLAVPRTKHYLDALQIGDTLRGRRPCIH 79 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 A Q+ + L+ + + L+LG E +G+ Sbjct: 80 WVTPSKEGWIAAQREAGKRIVAVELADGATPLTRLAPAREPTVLLLGHEHQGVPDDVLAE 139 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + M G +LNV+ A ++ Y Sbjct: 140 VEECVEIPMVGWGASLNVAVAGSLVAY 166 >gi|293391513|ref|ZP_06635847.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952047|gb|EFE02166.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter actinomycetemcomitans D7S-1] Length = 158 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDY--HEFAEIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + T + L++ + L+ G E +G+ T Sbjct: 59 KHKTFEAFLQSEQPKRLFALTTKGTPAHSEVKFALGDYLMFGPETRGIPMSILNTMPPEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148 >gi|88799882|ref|ZP_01115454.1| rRNA methylase [Reinekea sp. MED297] gi|88777313|gb|EAR08516.1| rRNA methylase [Reinekea sp. MED297] Length = 254 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 24/71 (33%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + N ++AL+LG E GL ++ +LNV+ Sbjct: 96 PWPLVHPRQMAEQALALPDNTRVALVLGRERSGLTNDELARCHCHVNIPANPDYSSLNVA 155 Query: 267 NAAAVALYITQ 277 A V Y + Sbjct: 156 AAVQVLCYELR 166 >gi|294789639|ref|ZP_06754873.1| RNA methyltransferase, TrmH family, group 2 [Simonsiella muelleri ATCC 29453] gi|294482440|gb|EFG30133.1| RNA methyltransferase, TrmH family, group 2 [Simonsiella muelleri ATCC 29453] Length = 154 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 4/151 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++L P N G I+R CD + P +S+ + ++ H + Sbjct: 1 MFTIILYQPEIPPNTGNIIRLCANTGCDLHLVKPLGFPLDSSKMKRAGLDY--HEFANIV 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + G + L++ K ++ + GAE +GL + + Sbjct: 59 VHENWDNCMVALAGRRIFALTTKGKTRPDKVAFLPHDVFLFGAETRGLPAEILASLPDNQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 M +++N+SN A+ ++ Sbjct: 119 KIRFPMMPDNRSMNLSNTVAITVFEAWRQQN 149 >gi|307564841|ref|ZP_07627369.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A] gi|307346563|gb|EFN91872.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A] Length = 181 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 24/49 (48%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A+I+G E KG++ + + + + G +LNVS A + ++ Sbjct: 126 AIIMGNEVKGVKQTVVDLSDNSIEIPQFGTKHSLNVSTTAGIVIWEFAK 174 >gi|283853731|ref|ZP_06370959.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp. FW1012B] gi|283570881|gb|EFC18913.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp. FW1012B] Length = 274 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 93/231 (40%), Gaps = 12/231 (5%) Query: 53 GVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGKEA 109 G V L + + +L + + VP +D++ Sbjct: 34 GRKPVRELLAERPKSVDDVLLRQGLRGPDIDAIVASCREAGVRFRFVPTGDLDRL--YPG 91 Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 HQG+ +LD + + LD V DP N+GA+ R+ A GII Sbjct: 92 NHQGVLARLIAGELASLDDVLEATRNAPLPVALALDRVQDPGNVGALARTLYALGGGGII 151 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223 + AK+++G L +P +++NL+ AL++ GF +G + + Sbjct: 152 LPRHEGARLGPGAAKASAGTLSRLPVAKVANLSRALEEAAEAGFAVVGAAGEDGAENALA 211 Query: 224 IKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + + L+LG E +G+R ++ ++ + + +LNV+ A A+ L Sbjct: 212 ARPEFPLVLVLGNEDEGIRLGVRKRCQTLYRIPQARPLDSLNVAQAGAILL 262 >gi|271501587|ref|YP_003334613.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586] gi|270345142|gb|ACZ77907.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii Ech586] Length = 248 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 26/71 (36%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + QE ++ +A++ G E GL + + + +LN++ Sbjct: 87 PWPMLEPRECGVLSIQEAQHAPVAIVFGRERVGLTNEELQKCHYHVAIPANPEYSSLNLA 146 Query: 267 NAAAVALYITQ 277 A + Y + Sbjct: 147 MAVQILSYEVR 157 >gi|82705756|ref|XP_727099.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23482786|gb|EAA18664.1| Saccharomyces cerevisiae ORF 2310-related [Plasmodium yoelii yoelii] Length = 777 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 58/154 (37%), Gaps = 1/154 (0%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALE 185 + + L+++ ++ N+ + R+ F+ ++ + S + Sbjct: 622 QFRKKNNLIVIASLIDKVPNLAGLCRTCEIFNVKKLLLSNINIVKDFQFQKISSTANKWM 681 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +I ++ +++ L K ++ K L I + LILG E +GL Sbjct: 682 NIQELKKNDIIKYLIKKKKKYSIIGLEQTNDSKQLNDFIFPENCILILGDEKEGLPSSIL 741 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + GII++LNV +AA+ +Y Sbjct: 742 LLLHHCVEIPGHGIIRSLNVHVSAAITIYEYFKQ 775 >gi|167753418|ref|ZP_02425545.1| hypothetical protein ALIPUT_01692 [Alistipes putredinis DSM 17216] gi|167658043|gb|EDS02173.1| hypothetical protein ALIPUT_01692 [Alistipes putredinis DSM 17216] Length = 178 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 3/153 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + + +VLD+V N+GA R+A AF+ + I + + + K+A GA Sbjct: 16 EFARMEKMPVAVVLDNVRSMQNVGAFFRTADAFAVERIALCGITATPPNREIHKTALGAE 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLR 241 + + + TD + + + G+ + + E + AL+ G E G+ Sbjct: 76 LTVAWDYFAATTDCIAALRAQGYLIYVVEQVEGAVMLDEFRPRPGQKYALVFGNEVDGVA 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + A + G ++NVS A V L+ Sbjct: 136 QEVVDAADGAIEIPQAGTKHSVNVSVAGGVVLW 168 >gi|302378509|gb|ADL32340.1| WenM [Proteus vulgaris] Length = 167 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 10/158 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L ++ E + Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQH 60 Query: 193 SNLT--------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + G + L++ D L+ G E +GL P Sbjct: 61 HDYYAFLESEGLNPDNAQSPTGARVFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYV 120 Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M +++N+SN AV ++ Sbjct: 121 LDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQL 158 >gi|302378477|gb|ADL32310.1| WenD [Proteus vulgaris] Length = 166 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 10/158 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L ++ E + Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQH 60 Query: 193 SNLT--------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + G + L++ D L+ G E +GL P Sbjct: 61 HDYYAFLESEGLNPDNAQSPTGARVFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYV 120 Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M +++N+SN AV ++ Sbjct: 121 LDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQL 158 >gi|167628241|ref|YP_001678740.1| RNA methyltransferase, trmh family, group 2 [Heliobacterium modesticaldum Ice1] gi|167590981|gb|ABZ82729.1| RNA methyltransferase, trmh family, group 2 [Heliobacterium modesticaldum Ice1] Length = 153 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 42/148 (28%), Gaps = 3/148 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G + R C+ + + L ++ + Sbjct: 1 MFHIVLVEPEIPPNTGNVARLCAGTGCELHLIKPLGFSIDDKQLKRAGLDYWHLVKVHVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 N L+K + + G E KGL + Sbjct: 61 DNWAAFLEKHGQANLLLLSTKGKKAYHE--FAYRPGDFFVFGKETKGLSEEILSEWPERV 118 Query: 253 -HLHMPGIIKALNVSNAAAVALYITQNH 279 + + ++LN+SNA AV ++ Sbjct: 119 ARIPLVADARSLNLSNAVAVVVFEGLRQ 146 >gi|168002156|ref|XP_001753780.1| predicted protein [Physcomitrella patens subsp. patens] gi|162695187|gb|EDQ81532.1| predicted protein [Physcomitrella patens subsp. patens] Length = 206 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 51/170 (30%), Gaps = 9/170 (5%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 + L +VL P N G+I R+ A + + + L + Sbjct: 11 NWEDVAQKDQQQKLLQVVLVSPQIPGNSGSIARTCAATGVGLHLVEPLGYKIDGSKLKST 70 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEG 237 ++ + D + + + + L+ G+E Sbjct: 71 GLEYWPYVVVKVHKSWNDFFTYFQEQNGEKRLLAYTKNGQYVHTDVQYKAGDWLLFGSEV 130 Query: 238 KGLRPKTQETATS------MAHLHMPGI-IKALNVSNAAAVALYITQNHF 280 GL E +T+ L M +++LN+S +A + +Y Sbjct: 131 DGLPAAALEQSTTGQYAGGTIRLPMSEEYVRSLNLSISAGIGVYEALRQL 180 >gi|114321720|ref|YP_743403.1| tRNA/rRNA methyltransferase (SpoU) [Alkalilimnicola ehrlichii MLHE-1] gi|114228114|gb|ABI57913.1| tRNA/rRNA methyltransferase (SpoU) [Alkalilimnicola ehrlichii MLHE-1] Length = 153 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 3/148 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G ++R A + + L ++ H Sbjct: 1 MFHIVLVEPEIPPNTGNVIRLAANTGAHLHLVHPLGFRLDDTRLRRAGLDY--HEWARVA 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSM 251 + + + LS+ Q AL+ G E GLR + + Sbjct: 59 EHPSLVDCLRQVRPRRAWALSTHGSVGYHQVRYAPGDALVFGCETGGLRRELTRFSPGRR 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++N+ N+ +V LY Sbjct: 119 LRLPMRPESRSMNLGNSVSVVLYEALRQ 146 >gi|66819903|ref|XP_643609.1| hypothetical protein DDB_G0275919 [Dictyostelium discoideum AX4] gi|60471754|gb|EAL69710.1| hypothetical protein DDB_G0275919 [Dictyostelium discoideum AX4] Length = 787 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 28/52 (53%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 I L+LG+E KG+ + +T + G+I++LNVS A+++ L Sbjct: 636 KPIVLVLGSETKGISRTISKKSTVSISIPGTGLIESLNVSQASSIILGECWR 687 >gi|253742338|gb|EES99175.1| TAR RNA loop binding protein, putative [Giardia intestinalis ATCC 50581] Length = 1676 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 32/99 (32%) Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 ++ +A L+ + +K S L+ K L+LG Sbjct: 1560 MSMTADMWLKIEEVQPHRLIQWIAEKKKDGYSIVCLEQSSRSVYLQDAELPQKAVLVLGN 1619 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E G + + G ++LNV + A+ ++ Sbjct: 1620 ERNGCPEEILSLCDMTVEIQQIGNTRSLNVHVSCAIFIW 1658 >gi|332521339|ref|ZP_08397795.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] gi|332043067|gb|EGI79265.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] Length = 152 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 2/99 (2%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-K 243 + + + LSS K D + L+ G E KGL Sbjct: 52 YWQHLNLHYYDNIEDFLEKNKTKKMVFLSSHGTKQHWDIKFEDDLFLVFGKESKGLPKSL 111 Query: 244 TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 T + + + + I++LN++NA ++ +Y Sbjct: 112 TSKHQDKLFKIPLYSEHIRSLNLANAVSIVVYEGLKQIN 150 >gi|328957663|ref|YP_004375049.1| putative rRNA methylase [Carnobacterium sp. 17-4] gi|328673987|gb|AEB30033.1| putative rRNA methylase [Carnobacterium sp. 17-4] Length = 169 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 47/151 (31%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + L P N G I R+ A + + ++ L ++ + Sbjct: 1 MTNHIALFEPQIPANTGNIARTCAATNTHLHLIEPLGFQTDDKHLKRAGLDYWNEVHITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPK-TQETAT 249 NL ++ + I + + G E GL + +E Sbjct: 61 HKNLAAFMEVAQNGQLHLITKFGHRVYSDVDYATTEGDHYFLFGKETTGLPEEFMREHEE 120 Query: 250 SMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 121 DCLRIPMNDEHVRSLNLSNTAAILIYEALRQ 151 >gi|284035447|ref|YP_003385377.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74] gi|283814740|gb|ADB36578.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74] Length = 176 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 22/53 (41%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 N A +LG E G+ + + A + + G +LN++ A + + Sbjct: 122 NKPYAFVLGNEVTGVCDEVIQAADLVLEIPQFGTKHSLNIAVTAGIICWDFLQ 174 >gi|218282592|ref|ZP_03488830.1| hypothetical protein EUBIFOR_01412 [Eubacterium biforme DSM 3989] gi|218216463|gb|EEC90001.1| hypothetical protein EUBIFOR_01412 [Eubacterium biforme DSM 3989] Length = 242 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 75/235 (31%), Gaps = 11/235 (4%) Query: 52 YGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 G + A L SR +L K R V + I+++ Sbjct: 6 EGAISCKALLEAGSRNCKKLYIDKKKNTKDTRYLAKIAKSRGCEVVFCSREEINELAT-G 64 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 H G+ L P L L +D V DP+N+G+I R+ A CD +I KR Sbjct: 65 KTHGGVLLIAEEKQIPQLIETYVHGFLCYIDGVEDPYNLGSISRTLYASGCDAMILPKRD 124 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + K+++GA E +P + + + + L Sbjct: 125 WSFAEQTILKASAGAYEKLPIYFVDADEELVNYCKKNNLPILCAHRKDAVGLYDYTFESD 184 Query: 229 IALILGAEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAAVALYITQNH 279 L LG +GL + + + + ++AAAV + Sbjct: 185 FCLCLGGALRGLSSTITAASKQNIVVEYGRDFRNALDS---ASAAAVFSFEILRQ 236 >gi|326796538|ref|YP_004314358.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas mediterranea MMB-1] gi|326547302|gb|ADZ92522.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas mediterranea MMB-1] Length = 239 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + G E +GL + + H+ +LN++ A V Y + Sbjct: 107 TAFVFGREDRGLTNEELQRCHYHVHIPSVEAFSSLNLATAVQVIAYELR 155 >gi|209880764|ref|XP_002141821.1| RNA methyltransferase, TrmH family protein [Cryptosporidium muris RN66] gi|209557427|gb|EEA07472.1| RNA methyltransferase, TrmH family protein [Cryptosporidium muris RN66] Length = 1629 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 52/163 (31%), Gaps = 2/163 (1%) Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + + S L+++ ++ N+ + R+ F ++ R ++ S Sbjct: 1464 MKRENYKKNKRSDLIVIGTLIDKIPNLAGLTRTCEVFKVGKLLLKTRKVLNDPIFRQISV 1523 Query: 181 SGALE--HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + + + S L I K LILG E + Sbjct: 1524 TAEKWLPIDELRESNICKYIHSMRLQGYIIIAVEQTASSILLPDFIFPKKSILILGKEKE 1583 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G+ + G+I++LNV +A++ +Y N Sbjct: 1584 GIPCDIISMVDKCLEIPQYGLIRSLNVHVSASICIYAYSNQHN 1626 >gi|290994023|ref|XP_002679632.1| predicted protein [Naegleria gruberi] gi|284093249|gb|EFC46888.1| predicted protein [Naegleria gruberi] Length = 209 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 56/155 (36%), Gaps = 2/155 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSESAVLAKSASGALEHI 187 + ++++ ++ N+ + R+ FS + + E ++ SA + Sbjct: 53 KRQSIIVIASLIDKIPNLAGLARTCEIFSAEKLVLPHMNVVEMEEFKSISVSAEHWIPVE 112 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 QK + + L ++ + LG E +G+ P+ Sbjct: 113 ACPPTELAQYLSQKRQEGYTIVGLEQTSTSVMLPDYEFPERCCICLGNEKEGMPPELLSL 172 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + G++++LNV +A++ +Y F + Sbjct: 173 MDTCVEIPQLGVLRSLNVHVSASIMIYRYTEQFLR 207 >gi|300742572|ref|ZP_07072593.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567] gi|300381757|gb|EFJ78319.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567] Length = 226 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G EG GL + A + G +++N + AA +A++ Sbjct: 163 YDLPKNCVLVFGQEGPGLSEEIHAAARDTLSIEQFGSTRSMNAATAAGIAMHAWVRR 219 >gi|118602767|ref|YP_903982.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567706|gb|ABL02511.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 153 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 44/148 (29%), Gaps = 3/148 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P+N GAI+R + + E L ++ Sbjct: 1 MLNLVLFEPEIPNNTGAIIRLCANMGANLRLIKPYGFEMEDKKLRRAGLDY--KELMCVS 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +SS K +L+LG E +GL Sbjct: 59 EYDNFDDYLEKEKPKNLFVVSSKVKTIYTDVKYQAGDSLLLGPETRGLPQDILNQYKG-I 117 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 L M ++LN+SN A++ Y Sbjct: 118 TLPMQDKSRSLNLSNCASIVAYEAWRQI 145 >gi|331009172|gb|EGH89228.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 257 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVR 158 >gi|330894480|gb|EGH27141.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020] Length = 257 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVR 158 >gi|329897042|ref|ZP_08271814.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC3088] gi|328921482|gb|EGG28868.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC3088] Length = 258 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 22/51 (43%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +A++ G E +GL + ++ ++LN++ A + Y + Sbjct: 109 VAMLFGREDRGLTNDELKLCDLHVNVPTDEAYRSLNLAMAVQILCYELRMQ 159 >gi|289626167|ref|ZP_06459121.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649074|ref|ZP_06480417.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 2250] gi|330869591|gb|EGH04300.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 257 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVR 158 >gi|257487213|ref|ZP_05641254.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330985000|gb|EGH83103.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 257 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVR 158 >gi|222086611|ref|YP_002545145.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84] gi|221724059|gb|ACM27215.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84] Length = 153 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 49/149 (32%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + L + L + P N G ILR A I L ++ L + Sbjct: 1 MTSLRIALYQPDIPGNTGTILRLAACLGLGVDIIEPAGFDISDRNLKRAGMDYLSAVALA 60 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R N + G + + S+ + + + L+ G E G+ ETA Sbjct: 61 RHVNWERFETWRAATGRRLVLASTKAAERYTDFAFREDDILLFGRESAGVPDHVHETADG 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++N++ + A+ Sbjct: 121 RILIPMLEGQRSINLAMSVAMISGEALRQ 149 >gi|157164727|ref|YP_001467080.1| RNA methyltransferase [Campylobacter concisus 13826] gi|112800448|gb|EAT97792.1| hypothetical tRNA/rRNA methyltransferase Slr0992 [Campylobacter concisus 13826] Length = 159 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N GAI R V + I + ++ + + Sbjct: 1 MFNIVLVHPQIPQNTGAIGRMCVNANLKLHIVKPTVFDLSEKAVRRAGLDYWKILDPKIW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSM 251 +L + L+ S + ++ + + + G E GL + + + Sbjct: 61 ESLDEFLEANLSHKERFFFATTKTNRLYYDAKFEPGDFIFFGGESTGLPREFMDINFKNA 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ +A + Y Sbjct: 121 ITIPMGKEGRSLNLAMSAGIIAYEAIRQ 148 >gi|51102914|gb|AAT96063.1| group 1 trmH family protein [Pseudomonas viridiflava] Length = 255 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVR 158 >gi|71738099|ref|YP_273564.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558652|gb|AAZ37863.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322935|gb|EFW79025.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076] gi|320329942|gb|EFW85930.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] Length = 257 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVR 158 >gi|317508477|ref|ZP_07966145.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974] gi|316253225|gb|EFV12627.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974] Length = 154 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 2/62 (3%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + L+ G E GL + + M ++LN++NAA +A+Y Sbjct: 86 HSDIAYQEGDVLLFGPEPTGLPEEVARHPRVAERLRIPMLAGRRSLNLANAATLAVYEAW 145 Query: 278 NH 279 Sbjct: 146 RQ 147 >gi|303279152|ref|XP_003058869.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460029|gb|EEH57324.1| predicted protein [Micromonas pusilla CCMP1545] Length = 119 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L+LGAEG+GL + + MPG +++LNV A + +Y+ + Sbjct: 71 VCLVLGAEGRGLSAEALGGC-QPVKVPMPGEMESLNVGIAGGILMYVMRK 119 >gi|145628348|ref|ZP_01784149.1| rRNA methylase [Haemophilus influenzae 22.1-21] gi|144980123|gb|EDJ89782.1| rRNA methylase [Haemophilus influenzae 22.1-21] Length = 160 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + T + L++ Q L+ G E +G+ Sbjct: 59 RHKTFEAFLESEKPKRLFALTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148 >gi|295676879|ref|YP_003605403.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. CCGE1002] gi|295436722|gb|ADG15892.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. CCGE1002] Length = 276 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + E + +IAL+ G E GL + E +++AH+ +LN+ Sbjct: 106 YGPPQWTPRAAAAAAHAEALHGEIALVFGNERTGLSNEDVERCSAIAHIPANPAYSSLNL 165 Query: 266 SNAAAVALYITQ 277 + A V Y + Sbjct: 166 AQAVQVLAYELR 177 >gi|226326847|ref|ZP_03802365.1| hypothetical protein PROPEN_00707 [Proteus penneri ATCC 35198] gi|225204684|gb|EEG87038.1| hypothetical protein PROPEN_00707 [Proteus penneri ATCC 35198] Length = 167 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 45/158 (28%), Gaps = 10/158 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L ++ E + Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQH 60 Query: 193 SNLTDALQKMHSWGFQTIGL--------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + L+ ++ D L+ G E +GL P Sbjct: 61 HDYYAFLESEGLNPDNAQSPSGARVFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYV 120 Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M +++N+SN AV ++ Sbjct: 121 LDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQL 158 >gi|226328027|ref|ZP_03803545.1| hypothetical protein PROPEN_01918 [Proteus penneri ATCC 35198] gi|225203731|gb|EEG86085.1| hypothetical protein PROPEN_01918 [Proteus penneri ATCC 35198] Length = 252 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 27/70 (38%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + E K+ +A+I G E GL + + ++ +LN++ Sbjct: 98 WPMLAPRECGERCVMEAKHKPVAIIFGRERTGLTNEELQKCDFHLYVPTNPEYGSLNLAM 157 Query: 268 AAAVALYITQ 277 A + Y + Sbjct: 158 AVQLVSYEIR 167 >gi|187933079|ref|YP_001887256.1| tRNA/rRNA methyltransferase [Clostridium botulinum B str. Eklund 17B] gi|188589587|ref|YP_001922195.1| hypothetical tRNA/rRNA methyltransferase Slr0992 [Clostridium botulinum E3 str. Alaska E43] gi|251780763|ref|ZP_04823683.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|187721232|gb|ACD22453.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum B str. Eklund 17B] gi|188499868|gb|ACD53004.1| hypothetical tRNA/rRNA methyltransferase Slr0992 [Clostridium botulinum E3 str. Alaska E43] gi|243085078|gb|EES50968.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 153 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 48/150 (32%), Gaps = 4/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ V + + + ++ +++ Sbjct: 1 MNLNIVLYQPEIPQNTGNIARTCVLTDSKLHLIKPLGFDIDEKHVRRAGLDYWKYLDLEI 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + ++K + + + ++ G E G+ E T M Sbjct: 61 HESYEAFMEKYKNERIFLSSTHA--GDYYSEISFQKGDFIMFGRESSGVPESIHEVITGM 118 Query: 252 AHLHM-PGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SN ++ Y F Sbjct: 119 -RIPMIQSSTRSLNLSNTVSIVAYEALRQF 147 >gi|332293439|ref|YP_004432048.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] gi|332171525|gb|AEE20780.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] Length = 165 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 33/52 (63%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 DK+ALI+GAE G+ +T E ++AH+ M GI ++NV+ A +ALY Sbjct: 113 DKVALIIGAENIGITDETLEQCNNIAHITMYGINSSMNVAQATGIALYELTR 164 >gi|319775295|ref|YP_004137783.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3047] gi|317449886|emb|CBY86097.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3047] Length = 160 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 45/151 (29%), Gaps = 4/151 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + T + L++ Q L+ G E +G+ Sbjct: 59 RHKTFEAFLESEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPMEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M +++N+SN+ AV +Y + Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQLS 149 >gi|154148507|ref|YP_001406799.1| RNA methyltransferase [Campylobacter hominis ATCC BAA-381] gi|153804516|gb|ABS51523.1| RNA methyltransferase, TrmH family [Campylobacter hominis ATCC BAA-381] Length = 161 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N GAI R + + I + + ++ + + Sbjct: 1 MFNIVLVHPQIPQNTGAIGRLCINANLKLHIVKPTIFSLDEKSVRRAGLDYWKKLNPTIW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 +L D + + ++ SK+ + G E GL + Sbjct: 61 DSLDDFMAANGDKISRFWFSTTKSKRLYFTADFKKDDFIFFGGESTGLPMNFMQKNWQNA 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ + + Y Sbjct: 121 ITIPMGNEGRSLNLAMSVGIVAYEAIRQ 148 >gi|328868520|gb|EGG16898.1| hypothetical protein DFA_07879 [Dictyostelium fasciculatum] Length = 382 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 27/48 (56%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 N+KIA++ G E G+ + + + L M G++++ NVS + + L Sbjct: 255 NEKIAIVFGNEHNGVSDEMKSLSDRRIFLPMSGLVESFNVSVSVGMLL 302 >gi|325279820|ref|YP_004252362.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM 20712] gi|324311629|gb|ADY32182.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM 20712] Length = 184 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 22/50 (44%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K ALI G E KG++ + + + + G + N+S + L+ Sbjct: 124 QKYALIFGNEVKGVQQEVIDLSDGCIEIPQFGTKHSFNISVTVGIVLWQI 173 >gi|51598313|ref|YP_072501.1| spoU protein [Borrelia garinii PBi] gi|51572884|gb|AAU06909.1| spoU protein [Borrelia garinii PBi] Length = 218 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 1/153 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + L VL+ + P N A +R+ + + + + + + Sbjct: 31 RTNYLTFVLEDIFQPQNASATIRTGEILGFSDVHIISKRNKC-TLNPDVTLGSSQWINLN 89 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + LE N+K+A+ G E GL + E A Sbjct: 90 RYNNTKFALDRLKSDGYSIVATSLDEQSINLEDFPINNKMAVFFGTELTGLSAEAFEAAD 149 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G ++ N+S A A+ +Y K Sbjct: 150 LYLKIPMHGFTQSYNISVAVAIVMYSLSIRLRK 182 >gi|52424221|ref|YP_087358.1| CspR protein [Mannheimia succiniciproducens MBEL55E] gi|52306273|gb|AAU36773.1| CspR protein [Mannheimia succiniciproducens MBEL55E] Length = 159 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAHIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + T + + L++ + L+ G E +G+ ++ Sbjct: 59 KHKTFEVFLESEKPKRLFALTTKGGPAHSEVKFELGDYLMFGPETRGIPMAILDSMPMEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y Sbjct: 119 KIRIPMTENSRSMNLSNSVAVTVYEAWRQL 148 >gi|312216567|emb|CBX96517.1| hypothetical protein [Leptosphaeria maculans] Length = 1292 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K ++LG+E G+ P+ + G+ ++LNV A +ALY Sbjct: 1233 LPKKCVVVLGSEKGGITPEVLTVIDRCVEIKTVGVTRSLNVQTAGGIALYEWWR 1286 >gi|87310712|ref|ZP_01092839.1| RNA methyltransferase, TrmH family protein [Blastopirellula marina DSM 3645] gi|87286469|gb|EAQ78376.1| RNA methyltransferase, TrmH family protein [Blastopirellula marina DSM 3645] Length = 166 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 26/68 (38%) Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + + + L++G E +G + + + G+ + NV+ A +A Sbjct: 96 QTTNSQDIHHFSFVRNTVLVIGNERQGTPDDVLRLLDDVVEIPVYGMPYSFNVATATCMA 155 Query: 273 LYITQNHF 280 LY F Sbjct: 156 LYEFCRQF 163 >gi|42561144|ref|NP_975595.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492642|emb|CAE77237.1| rRNA Methylase (Spou-family) [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321276|gb|ADK69919.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 181 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 18/155 (11%), Positives = 44/155 (28%), Gaps = 1/155 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + +++ + + + + II + + + SA+ Sbjct: 1 MNKRKINIVLYEPEIAQNVGAIMRTCVAINARLHIIEPLGFIFDDRHLSRPSANEYKYVD 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246 + + F + ND + L+ G E G+ E Sbjct: 61 CIRYDDWNDFITKHPNITLFCLSRYGQKPISDFDFSKINDNVYLVFGKESTGIAKPILKE 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M ++LN++N +A Y + Sbjct: 121 HYNTTFRIPMISETRSLNIANTVGIASYEVLRQWN 155 >gi|330813688|ref|YP_004357927.1| rRNA Methylase [Candidatus Pelagibacter sp. IMCC9063] gi|327486783|gb|AEA81188.1| rRNA Methylase [Candidatus Pelagibacter sp. IMCC9063] Length = 148 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 46/149 (30%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + L + P N AI+R F + I + L + L Sbjct: 1 MINIALYQPDIPQNTAAIIRICACFDINLEIIKPCGYFFDKKKLDRIYLDYL--DICNLR 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + + I L++ S + + L+ G E G+ + + + Sbjct: 59 FYESYDDFFSKKKDTRLILLTTKSDSNYTKFLYKKNDTLVFGKESAGVPEEIHNSIQNKL 118 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M ++ N++++ A+ Sbjct: 119 TIKMNKKTRSFNIASSVAIVASEALRQIN 147 >gi|308050472|ref|YP_003914038.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica DSM 9799] gi|307632662|gb|ADN76964.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica DSM 9799] Length = 244 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + + +LN++ A + Y T+ Sbjct: 106 TGPVALVFGRENSGLSNEELQMCHYHVCIPANPEYSSLNLAQAVQLLSYETR 157 >gi|77361588|ref|YP_341163.1| tRNA/rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125] gi|76876499|emb|CAI87721.1| putative tRNA/rRNA methyltransferase (trmH family) [Pseudoalteromonas haloplanktis TAC125] Length = 241 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + +LN++ A Y T+ Sbjct: 107 NGPVALVFGRENSGLSNDELQLCNYHVCIPANPEYSSLNLAMAVQTLCYETR 158 >gi|294637706|ref|ZP_06715983.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Edwardsiella tarda ATCC 23685] gi|291089136|gb|EFE21697.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Edwardsiella tarda ATCC 23685] Length = 245 Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 5/81 (6%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + + QE ++ +A++ G E GL + + +LN++ Sbjct: 87 PWPMLEPRECGQRAAQESEHAPVAIVFGRERVGLTNDELQKCHYHVQIPANPEYTSLNLA 146 Query: 267 NAAAVALYITQ-----NHFAK 282 A + Y + AK Sbjct: 147 MAVQILSYEIRVAHLDRQAAK 167 >gi|325267126|ref|ZP_08133794.1| TrmH family RNA methyltransferase [Kingella denitrificans ATCC 33394] gi|324981364|gb|EGC17008.1| TrmH family RNA methyltransferase [Kingella denitrificans ATCC 33394] Length = 174 Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 4/153 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N+ +VL P N G I+R C + P +S+ + ++ H Sbjct: 19 NNMFTVVLYQPEIPPNTGNIIRLCANTGCSLHLVKPLGFPLDSSKMKRAGLDY--HEFAR 76 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-- 248 + G + L++ ++ + G E +GL + +T Sbjct: 77 LTVHENWEECMQALAGRRIFALTTKGTARPDKAAFQAGDVFVFGPETRGLPAEILDTLPE 136 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 M +++N+SN AV ++ Sbjct: 137 NQKIRFPMLPDNRSMNLSNTVAVTVFEAWRQQN 169 >gi|304373120|ref|YP_003856329.1| Putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma hyorhinis HUB-1] gi|304309311|gb|ADM21791.1| Putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma hyorhinis HUB-1] Length = 175 Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 54/155 (34%), Gaps = 6/155 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL N G I+RS A + I E L + A+G L I Sbjct: 1 MIHIVLYQPEISPNTGNIIRSCFATNAKLHIIKPIAFELEPRYLKRPAAGKLLSDIEHEI 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-----NDKIALILGAEGKGLRPKTQ-E 246 + D K + ++ + + K N+ I L+ G E G+ + Sbjct: 61 HSNYDEFVKKYGDKKIFYITRYATQTYSDVDFKQIRDNNEDIFLMFGTESTGIPKSILSK 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M ++LN++N+ + +Y Sbjct: 121 NLNTCLRIPMQEKSRSLNLANSVVIVIYEVLRQLN 155 >gi|254522636|ref|ZP_05134691.1| RNA methyltransferase TrmH, group 1 [Stenotrophomonas sp. SKA14] gi|219720227|gb|EED38752.1| RNA methyltransferase TrmH, group 1 [Stenotrophomonas sp. SKA14] Length = 275 Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +AL+ G E GL + + + H+ +LN++ A V Y T+ Sbjct: 134 VALVFGRERTGLTNEELQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQL 185 >gi|190575201|ref|YP_001973046.1| putative SpoU family tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] gi|190013123|emb|CAQ46755.1| putative SpoU-family tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] Length = 256 Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +AL+ G E GL + + + H+ +LN++ A V Y T+ Sbjct: 115 VALVFGRERTGLTNEELQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQL 166 >gi|194366519|ref|YP_002029129.1| TrmH family, group 1 RNA methyltransferase [Stenotrophomonas maltophilia R551-3] gi|194349323|gb|ACF52446.1| RNA methyltransferase, TrmH family, group 1 [Stenotrophomonas maltophilia R551-3] Length = 256 Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +AL+ G E GL + + + H+ +LN++ A V Y T+ Sbjct: 115 VALVFGRERTGLTNEELQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQL 166 >gi|16272707|ref|NP_438925.1| putative RNA methyltransferase [Haemophilus influenzae Rd KW20] gi|145630511|ref|ZP_01786291.1| rRNA methylase [Haemophilus influenzae R3021] gi|260579857|ref|ZP_05847687.1| rRNA methylase [Haemophilus influenzae RdAW] gi|260581580|ref|ZP_05849377.1| rRNA methylase [Haemophilus influenzae NT127] gi|1176303|sp|P44868|TRML_HAEIN RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL gi|28948421|pdb|1J85|A Chain A, Structure Of Yibk From Haemophilus Influenzae (Hi0766), A Truncated Sequence Homolog Of Trna (Guanosine-2'-O-) Methyltransferase (Spou) gi|28948677|pdb|1MXI|A Chain A, Structure Of Yibk From Haemophilus Influenzae (Hi0766): A Methyltransferase With A Cofactor Bound At A Site Formed By A Knot gi|1573774|gb|AAC22424.1| rRNA methylase, putative [Haemophilus influenzae Rd KW20] gi|144983901|gb|EDJ91343.1| rRNA methylase [Haemophilus influenzae R3021] gi|260093141|gb|EEW77074.1| rRNA methylase [Haemophilus influenzae RdAW] gi|260095173|gb|EEW79064.1| rRNA methylase [Haemophilus influenzae NT127] Length = 160 Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + T + L++ Q L+ G E +G+ Sbjct: 59 RHKTFEAFLESEKPKRLFALTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148 >gi|260771409|ref|ZP_05880334.1| tRNA:Cm32/Um32 methyltransferase [Vibrio furnissii CIP 102972] gi|260613535|gb|EEX38729.1| tRNA:Cm32/Um32 methyltransferase [Vibrio furnissii CIP 102972] Length = 243 Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 18/52 (34%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + +LN++ A Y + Sbjct: 106 QHPVAIVFGRERTGLTNDELQKCHYHVSIPANPEYSSLNLAMAVQTLCYEIR 157 >gi|192360664|ref|YP_001981951.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107] gi|190686829|gb|ACE84507.1| RNA methyltransferase, TrmH family, group 1 [Cellvibrio japonicus Ueda107] Length = 286 Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E +GL + T H+ +LN++ A V Y + Sbjct: 116 VAVVFGREDRGLTNEELHKCTYHVHIPANAEYSSLNLATAVQVICYEIR 164 >gi|292491983|ref|YP_003527422.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus halophilus Nc4] gi|291580578|gb|ADE15035.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus halophilus Nc4] Length = 242 Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + H+ +LN++ A V Y + Sbjct: 110 VAIVFGREHSGLSNIELDHCHYWVHIPSNPAYSSLNLAAAVQVMAYEVR 158 >gi|330723254|gb|AEC45624.1| Putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma hyorhinis MCLD] Length = 175 Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 54/155 (34%), Gaps = 6/155 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL N G I+RS A + I E L + A+G L I Sbjct: 1 MIHIVLYQPEISPNTGNIIRSCFATNAKLHIIKPIAFELEPRYLKRPAAGKLLSDIEHEI 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-----NDKIALILGAEGKGLRPKTQ-E 246 + D K + ++ + + K N+ I L+ G E G+ + Sbjct: 61 HSNYDEFVKKYGDKKIFYITRYATQTYSDVDFKQIRDNNEDIFLMFGTESTGIPKSILSK 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M ++LN++N+ + +Y Sbjct: 121 NLNTCLRIPMQEKSRSLNLANSVVIVIYEVLRQLN 155 >gi|70732292|ref|YP_262048.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5] gi|68346591|gb|AAY94197.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas fluorescens Pf-5] Length = 257 Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + H+ +LN++ A V Y + Sbjct: 110 VALVFGREDSGLTNDELQRCHFHVHIPSDPEFSSLNLATAVQVLAYEVR 158 >gi|312114061|ref|YP_004011657.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC 17100] gi|311219190|gb|ADP70558.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC 17100] Length = 175 Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 61/162 (37%) Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + + + + L + P N G ILR A + I L Sbjct: 6 VSMAQFSSTIHGDPLLMRVALYQPDIPQNTGTILRMAACLNVAVDIIEPCGFDLSDRALR 65 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 ++A + + R ++ L +++ G + + +++ P + ++ ++ G E Sbjct: 66 RAALDYYDKVRVQRHASFELFLNNINASGARLVLMTTKGATPYHDVLYRNEDVILAGRES 125 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 G+ K E+A + M +++LNV+ + A+ L Sbjct: 126 AGVPDKVHESAHLRVRIPMQQSLRSLNVAVSMAMVLGEALGQ 167 >gi|302378497|gb|ADL32329.1| WemW [Proteus mirabilis] Length = 167 Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 10/158 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L ++ E + Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQH 60 Query: 193 SNLTDA--------LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + G + L++ D L+ G E +GL P Sbjct: 61 HDYYAFLESEGLSPDNVQSPTGARLFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYV 120 Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M +++N+SN AV ++ Sbjct: 121 LDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQL 158 >gi|115699928|ref|XP_782457.2| PREDICTED: similar to TAR RNA loop binding protein [Strongylocentrotus purpuratus] gi|115978414|ref|XP_001188472.1| PREDICTED: similar to TAR RNA loop binding protein [Strongylocentrotus purpuratus] Length = 1252 Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+LG E +G+ + + + G I++LNV + A+ ++ Sbjct: 1189 FKFPQRTMLLLGKEREGIPVELIQFLDVCVEIPQLGFIRSLNVHVSGALMIWEYTRQ 1245 >gi|83815691|ref|YP_445907.1| SpoU rRNA methylase family protein [Salinibacter ruber DSM 13855] gi|294507817|ref|YP_003571875.1| methyltransferase [Salinibacter ruber M8] gi|83757085|gb|ABC45198.1| SpoU rRNA methylase family protein [Salinibacter ruber DSM 13855] gi|294344144|emb|CBH24922.1| methyltransferase [Salinibacter ruber M8] Length = 187 Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 2/167 (1%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 E + + + +V+ +V HN+G++ R++ A + I T E Sbjct: 6 WDEIERPAPEEIPTLPKHPVRLVVHNVRSIHNVGSMFRTSDAARIEHIHLTGFTGTPEHK 65 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALI 232 L K+A GA + + + + L+ + G+ L D IAL+ Sbjct: 66 DLHKTALGAQDAVEWSQHDEPRPLLRDLKDAGYTIAALEQTDHTQRPDAAPADAFPIALV 125 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +G E +G+ P + + G +LNV A +A+Y Sbjct: 126 VGNEVRGIEPDVLDAVDLALEIPQYGAKISLNVGVAYGIAVYDLIRR 172 >gi|297560901|ref|YP_003679875.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845349|gb|ADH67369.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 221 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L +GAE G P A ++ ++ G + +LNV+ A A+AL + Sbjct: 148 HAAPLEPDVCLAVGAEDHGCSPALLAGADAVTYVPQIGRVGSLNVAVATAIALSEARRR 206 >gi|255070677|ref|XP_002507420.1| RNA methyltransferase [Micromonas sp. RCC299] gi|226522695|gb|ACO68678.1| RNA methyltransferase [Micromonas sp. RCC299] Length = 2006 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K AL+LG E +G+ + + G+I++LNV +A+VA+ Sbjct: 1949 YRFPRKTALVLGREREGIDADVLNVLDACVVIPQKGMIRSLNVHVSASVAMAAYAR 2004 >gi|308807411|ref|XP_003081016.1| tRNA/rRNA methyltransferase (ISS) [Ostreococcus tauri] gi|116059478|emb|CAL55185.1| tRNA/rRNA methyltransferase (ISS) [Ostreococcus tauri] Length = 170 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 4/101 (3%) Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + + + ++ E L+ G+E KGLR Sbjct: 65 CVRVHPSWEAFYAYWRGVETTEKRLVGFSKLGARPHAETGAYRRGDWLLFGSEDKGLRED 124 Query: 244 TQETATS---MAHLHMPGI-IKALNVSNAAAVALYITQNHF 280 E + + + +++LN+S +A + +Y Sbjct: 125 AMEACRQSGGIRRIPIDETHVRSLNLSVSAGIGIYEALRQL 165 >gi|116179962|ref|XP_001219830.1| hypothetical protein CHGG_00609 [Chaetomium globosum CBS 148.51] gi|88184906|gb|EAQ92374.1| hypothetical protein CHGG_00609 [Chaetomium globosum CBS 148.51] Length = 647 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLH---MPG-IIKALNVSNAAAVAL 273 K + L++G EG+GL + A ++ MPG + +LNVS A + Sbjct: 563 KREPCVLLVGNEGEGLSRLVVKKADYEVNVPNLAMPGSGVDSLNVSVAVGLLC 615 >gi|307729273|ref|YP_003906497.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. CCGE1003] gi|307583808|gb|ADN57206.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. CCGE1003] Length = 292 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 125 LHGEIALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELR 177 >gi|323526554|ref|YP_004228707.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001] gi|323383556|gb|ADX55647.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. CCGE1001] Length = 277 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 125 LHGEIALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELR 177 >gi|170694941|ref|ZP_02886090.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia graminis C4D1M] gi|170140039|gb|EDT08218.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia graminis C4D1M] Length = 378 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 212 LHGEIALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELR 264 >gi|145632119|ref|ZP_01787854.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 3655] gi|148827956|ref|YP_001292709.1| putative RNA methyltransferase [Haemophilus influenzae PittGG] gi|144987026|gb|EDJ93556.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 3655] gi|148719198|gb|ABR00326.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittGG] Length = 160 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + T + L++ Q L+ G E +G+ Sbjct: 59 RHKTFEAFLESEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPLEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148 >gi|187924494|ref|YP_001896136.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia phytofirmans PsJN] gi|187715688|gb|ACD16912.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia phytofirmans PsJN] Length = 353 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 201 LHGEIALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELR 253 >gi|15920666|ref|NP_376335.1| hypothetical protein ST0454 [Sulfolobus tokodaii str. 7] gi|15621449|dbj|BAB65444.1| 227aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 227 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 K+ALI G E GL + + + + LN+S+A + LY + Sbjct: 102 KKVALIFGRESVGLTREEIAKSDLLLFIPGNPEYPVLNLSHAVGIVLYEIWKSRGE 157 >gi|315180990|gb|ADT87904.1| RNA methyltransferase, TrmH family [Vibrio furnissii NCTC 11218] Length = 243 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 18/52 (34%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + +LN++ A Y + Sbjct: 106 QHPVAIVFGRERTGLTNDELQKCHYHVSIPANPEYSSLNLAMAVQTLCYEIR 157 >gi|298209194|ref|YP_003717373.1| SpoU rRNA methylase family protein [Croceibacter atlanticus HTCC2559] gi|83849121|gb|EAP86990.1| SpoU rRNA methylase family protein [Croceibacter atlanticus HTCC2559] Length = 171 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K+ LI+G+E KG+ + + H+ M G ++NV+ A +AL+ Sbjct: 114 NKLILIIGSERKGVSEQLLKHCDFATHITMFGKNSSMNVAQATGIALFQITK 165 >gi|325186501|emb|CCA21041.1| hypothetical protein VOLCADRAFT_116506 [Albugo laibachii Nc14] Length = 314 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 59/152 (38%), Gaps = 3/152 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R S++++VL+ D N A+LR+A + + + A + + I Sbjct: 81 QQRTSRIVLVLEASCDMFNQQAVLRTAECLGVQHVWIVEPAFYKAVKSDRRIARQSSQWI 140 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKT 244 R L + + G++ + Q D++A+++G E G+ Sbjct: 141 SVRRFKTSEACLVALFAEGYEVWATDLSQRSVSLQSGTLSVPDRLAIVMGRETDGVSETM 200 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + A +L + G +LN++ A + L+ Sbjct: 201 LQAAQHRVYLPIYGFTDSLNLNVATGMVLFQI 232 >gi|197287001|ref|YP_002152873.1| methyltransferase [Proteus mirabilis HI4320] gi|227354755|ref|ZP_03839173.1| SpoU family rRNA methyltransferase [Proteus mirabilis ATCC 29906] gi|194684488|emb|CAR46253.1| putative methyltransferase [Proteus mirabilis HI4320] gi|227165198|gb|EEI50026.1| SpoU family rRNA methyltransferase [Proteus mirabilis ATCC 29906] gi|302378451|gb|ADL32286.1| WemF [Proteus mirabilis] gi|302378467|gb|ADL32301.1| WemO [Proteus mirabilis] Length = 167 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 10/158 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L ++ E + Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQH 60 Query: 193 SNLTDA--------LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + G + L++ D L+ G E +GL P Sbjct: 61 HDYYAFLESEGLSPDNAQSPTGARLFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYV 120 Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M +++N+SN AV ++ Sbjct: 121 LDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQL 158 >gi|260903742|ref|ZP_05912064.1| rRNA methylase [Brevibacterium linens BL2] Length = 340 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 38/271 (14%), Positives = 76/271 (28%), Gaps = 37/271 (13%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY ++ +S + A L + L L D Sbjct: 59 DYTQLTDVALRSVREPAEGLFIAESSKIIRRAHAAGMVP-RSYLTSPKWLFDLA-DLIAA 116 Query: 89 HPFPVKTVPPQTIDKIVGKE--------------------------------AVHQGLAL 116 + P+ ++ + G V Sbjct: 117 YDAPIFIGTDAAVEALTGFHLHRGALAAMHRPAMDDVSQLVAKARRIVVIEDVVDHTNVC 176 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 R + VL+ + D N+G+ R+A A D ++ + + Sbjct: 177 GPKLAHPEPAAEPRRRSRIAVLEGLVDHTNVGSAFRNAAALGLDAVLVSPTCADPLYRRA 236 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIALIL 233 + + G + +P+ RI + + + G+ ++ +AL+ Sbjct: 237 VRVSMGTVFQVPWTRIPEWEKGIAGLKAAGYVLAGMTLGEGAITLDELVAEDHENLALVF 296 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 G EG G+ P+T + M G + +LN Sbjct: 297 GTEGHGITPETDALLDRRVTIPMMGGVDSLN 327 >gi|237812913|ref|YP_002897364.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei MSHR346] gi|237505076|gb|ACQ97394.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei MSHR346] Length = 338 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 169 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 220 >gi|229845812|ref|ZP_04465924.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 7P49H1] gi|229810816|gb|EEP46533.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 7P49H1] Length = 160 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + T A + + L++ Q L+ G E +G+ Sbjct: 59 RHKTFAAFLESEKPQRLLALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPLEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148 >gi|226198991|ref|ZP_03794554.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei Pakistan 9] gi|225929091|gb|EEH25115.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei Pakistan 9] Length = 309 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185 >gi|254197328|ref|ZP_04903750.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei S13] gi|169654069|gb|EDS86762.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei S13] Length = 309 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185 >gi|167903380|ref|ZP_02490585.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei NCTC 13177] Length = 303 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185 >gi|167837119|ref|ZP_02464002.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia thailandensis MSMB43] Length = 299 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185 >gi|167720292|ref|ZP_02403528.1| putative tRNA/rRNA methyltransferase protein [Burkholderia pseudomallei DM98] Length = 192 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 23 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 74 >gi|254191444|ref|ZP_04897948.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei Pasteur 52237] gi|157939116|gb|EDO94786.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei Pasteur 52237] Length = 309 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185 >gi|167739289|ref|ZP_02412063.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 14] gi|167916848|ref|ZP_02503939.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 112] gi|254184411|ref|ZP_04891001.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1655] gi|254297077|ref|ZP_04964530.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 406e] gi|157807712|gb|EDO84882.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 406e] gi|184214942|gb|EDU11985.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1655] Length = 301 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185 >gi|134277341|ref|ZP_01764056.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 305] gi|134250991|gb|EBA51070.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 305] Length = 303 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185 >gi|126454106|ref|YP_001066857.1| RNA methyltransferase [Burkholderia pseudomallei 1106a] gi|167846415|ref|ZP_02471923.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei B7210] gi|242315889|ref|ZP_04814905.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1106b] gi|126227748|gb|ABN91288.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1106a] gi|242139128|gb|EES25530.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1106b] Length = 311 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185 >gi|121600581|ref|YP_993479.1| RNA methyltransferase [Burkholderia mallei SAVP1] gi|124386415|ref|YP_001029091.1| RNA methyltransferase [Burkholderia mallei NCTC 10229] gi|126449337|ref|YP_001080987.1| RNA methyltransferase [Burkholderia mallei NCTC 10247] gi|167001789|ref|ZP_02267581.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei PRL-20] gi|167894996|ref|ZP_02482398.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 7894] gi|167919632|ref|ZP_02506723.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei BCC215] gi|238561600|ref|ZP_00441709.2| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei GB8 horse 4] gi|254178315|ref|ZP_04884970.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei ATCC 10399] gi|254200241|ref|ZP_04906607.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei FMH] gi|254358011|ref|ZP_04974284.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei 2002721280] gi|121229391|gb|ABM51909.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei SAVP1] gi|124294435|gb|ABN03704.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei NCTC 10229] gi|126242207|gb|ABO05300.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei NCTC 10247] gi|147749837|gb|EDK56911.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei FMH] gi|148027138|gb|EDK85159.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei 2002721280] gi|160699354|gb|EDP89324.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei ATCC 10399] gi|238524188|gb|EEP87622.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei GB8 horse 4] gi|243062474|gb|EES44660.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei PRL-20] Length = 303 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185 >gi|76809515|ref|YP_334074.1| RNA methyltransferase [Burkholderia pseudomallei 1710b] gi|254261703|ref|ZP_04952757.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1710a] gi|76578968|gb|ABA48443.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1710b] gi|254220392|gb|EET09776.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1710a] Length = 346 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 169 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 220 >gi|53723764|ref|YP_103289.1| RNA methyltransferase [Burkholderia mallei ATCC 23344] gi|254209320|ref|ZP_04915666.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei JHU] gi|52427187|gb|AAU47780.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei ATCC 23344] gi|147750093|gb|EDK57164.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei JHU] Length = 306 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 137 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 188 >gi|53719858|ref|YP_108844.1| putative tRNA/rRNA methyltransferase protein [Burkholderia pseudomallei K96243] gi|167816505|ref|ZP_02448185.1| putative tRNA/rRNA methyltransferase protein [Burkholderia pseudomallei 91] gi|217420642|ref|ZP_03452147.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 576] gi|52210272|emb|CAH36251.1| putative tRNA/rRNA methyltransferase protein [Burkholderia pseudomallei K96243] gi|217396054|gb|EEC36071.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 576] Length = 303 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185 >gi|261366563|ref|ZP_05979446.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM 15176] gi|282571380|gb|EFB76915.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM 15176] Length = 169 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 38/134 (28%), Gaps = 3/134 (2%) Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 A + G + K L++ + I+ D Sbjct: 15 QNSGNIARTCAVTGARLHMVGPMGFAIDDKKLKRAGLDYWHQLDITYYKDLADFFSKNKG 74 Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK--TQETATSMAHLHMPGIIKALNV 265 +S + D L+ G E GL + + A + M + LN+ Sbjct: 75 PFFYFTSKGPRRHVDVQYPDGAYLVFGREDAGLPEELLVRHEAD-CVRMPMRRGERCLNL 133 Query: 266 SNAAAVALYITQNH 279 SNA AV +Y Sbjct: 134 SNAVAVGVYEVLRQ 147 >gi|193216697|ref|YP_001999939.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis 158L3-1] gi|193002020|gb|ACF07235.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis 158L3-1] Length = 173 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 6/153 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + ++L N I+R+ A + I L + A+G I Sbjct: 1 MINVILYQPEISPNTANIIRTCFATNAKLHIIKPTAFDLHPHWLKRKAAGHFLSEIEHEI 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-----DKIALILGAEGKGLRPKTQE- 246 + K + + + KN +I ++ G E G+ K + Sbjct: 61 HANYEQFFKKYGDKNIYYITRYGLSNYSQIDWKNELDNNKEIWVMFGTESTGIPKKIMQT 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M ++LN++N+ A+ LY Sbjct: 121 KIANCLRIPMFAQCRSLNLANSVAIVLYEIMRQ 153 >gi|148546113|ref|YP_001266215.1| RNA methyltransferase [Pseudomonas putida F1] gi|148510171|gb|ABQ77031.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida F1] Length = 279 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + + H+ +LN++ A V Y + Sbjct: 138 IALVFGREHAGLTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVR 186 >gi|328769754|gb|EGF79797.1| hypothetical protein BATDEDRAFT_11794 [Batrachochytrium dendrobatidis JAM81] Length = 158 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K ++LG E +G+ + + G+I++LNV + A+ ++ Sbjct: 95 FEFPRKTVVLLGKEREGIPTHLMAHLDHVLEIPQFGVIRSLNVHVSGALIVWEYTKQ 151 >gi|300114137|ref|YP_003760712.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113] gi|299540074|gb|ADJ28391.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus watsonii C-113] Length = 246 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++A++ G E GL + H+ +LN++ A V Y + Sbjct: 106 LKGEVAIVFGRENSGLSNFELDHCNYWVHIPSNPTYSSLNLAAAVQVMAYEIR 158 >gi|227834128|ref|YP_002835835.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] gi|227455144|gb|ACP33897.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] Length = 247 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 6/193 (3%) Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 LP + P+ + + G R L + +++ + N Sbjct: 53 LPEGPEAEKYDPELLAE--GDRRNVVDAYRYWTREAIREDIDKRRHALHIAIENFENDSN 110 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IG ++R+A AF+ D + R + + L H + A Q + Sbjct: 111 IGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLMHHTDVSELMAWAADQDLTVVA 170 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + ++ L+ G EG G+ P+ Q+ A + G +++N Sbjct: 171 IDNTPGCVPLET----AELPERCLLLFGQEGPGVSPEAQDAAVMTCSIAQFGSTRSINAG 226 Query: 267 NAAAVALYITQNH 279 AA +A++ Sbjct: 227 VAAGIAMHAWIRQ 239 >gi|237784924|ref|YP_002905629.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] gi|237757836|gb|ACR17086.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] Length = 239 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 4/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + +++ HNIG ++R+A AF+ + + + + + L H Sbjct: 86 RRFPFHVAIENFTSDHNIGTVVRTANAFAAEAVHIVGKKRWNRRGAMVTDRYQHLYHHST 145 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + S + ++ L+ G EG G+ + Q A Sbjct: 146 VNDVLQWAHEHDLTVIAVDNVPGSVPVET----AELPERCLLLFGQEGPGVSEEAQRGAV 201 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G +++N AA +A++ Sbjct: 202 QTVSIAQFGSTRSINAGVAAGIAMHAWVRQ 231 >gi|257057786|ref|YP_003135618.1| rRNA methylase [Saccharomonospora viridis DSM 43017] gi|256587658|gb|ACU98791.1| rRNA methylase [Saccharomonospora viridis DSM 43017] Length = 238 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 4/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + +++ HNIG ++R+A AF+ + + + + L H P Sbjct: 75 RRHPFHVAIENFQHDHNIGTVVRTANAFAAAAVHIVGKRRWNRRGAMVTDRYQHLHHHPQ 134 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + + + + L+ G EG GL Q+ A Sbjct: 135 VSGLVDYATERGLTIVAVDNTPGAQPVET----VRLPRECVLLFGQEGPGLSEDAQQAAE 190 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + G +++N AA + ++ Sbjct: 191 LVVSIAQFGSTRSINAGVAAGIVMHTWVRQ 220 >gi|148826591|ref|YP_001291344.1| putative RNA methyltransferase [Haemophilus influenzae PittEE] gi|148716751|gb|ABQ98961.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittEE] Length = 160 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250 + T + L++ Q L+ G E +G+ Sbjct: 59 RHKTFEAFLESEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPLEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148 >gi|297621748|ref|YP_003709885.1| rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] gi|297377049|gb|ADI38879.1| rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] Length = 154 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 4/145 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I+R+ D + L++ + + L Sbjct: 4 VVLYQPQIPQNTGNIVRTCSVTGSDLYLVAP---LGFQITDRWLKRAGLDYWEGVNMQVL 60 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254 + + + S SS +K+P + L+ G+E GL E L Sbjct: 61 ENLEEVLESQQTPFYFFSSHAKRPYSKISFTTDDWLVFGSETHGLPKTFVEKWPEKFISL 120 Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279 M + LN++ + +A+Y Sbjct: 121 PMIEGKRCLNLATSVGIAVYEAYRQ 145 >gi|296131382|ref|YP_003638632.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] gi|296023197|gb|ADG76433.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] Length = 168 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 52/148 (35%), Gaps = 2/148 (1%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 L+ N+G +LR+ A + R A+ + Sbjct: 17 SHGCWDHLVAAPLWPLHGANLGTLLRTCDAAGA--CLAVPRLPWVPEALARGNTLRRPAC 74 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + + Q+ + L+ +S + + + + ++LG E G+ P+ + Sbjct: 75 VHWTGSPVRWLERQRERGSAVVGVELAEESVRLGDLPVARGRTVMVLGHEQTGVPPEALD 134 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 + + M G +LNV+ A ++ LY Sbjct: 135 LLDVVVEIPMVGTGASLNVAVAGSLVLY 162 >gi|254467895|ref|ZP_05081301.1| rRNA methylase [beta proteobacterium KB13] gi|207086705|gb|EDZ63988.1| rRNA methylase [beta proteobacterium KB13] Length = 243 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 KN+K AL+ G E GL+ + + +A++ +LN+S A V Y + +F K Sbjct: 110 KNNKFALLFGNETSGLKNEEIQHCHYLAYIDANKEYSSLNLSQAVQVTAYELRKNFNK 167 >gi|83999870|emb|CAI59983.1| putative tRNA/mRNA methyltransferase [Streptomyces tenjimariensis] Length = 164 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K AL++G E GL + + + + G+ + NV+ A A+A+Y Sbjct: 102 HDFAFPRKTALVIGNERTGLDDEELKLVDDCTEIPVWGMPHSYNVATATAMAMYEYCKQ 160 >gi|330504693|ref|YP_004381562.1| RNA methyltransferase [Pseudomonas mendocina NK-01] gi|328918979|gb|AEB59810.1| RNA methyltransferase [Pseudomonas mendocina NK-01] Length = 262 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 26/72 (36%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + EQ ++AL+ G E GL + + H+ +LN+ Sbjct: 90 PWPLLDPRECGVTSCEQAAAGGEVALVFGREYAGLTNEELQRCQYHVHIPSNPEFSSLNL 149 Query: 266 SNAAAVALYITQ 277 + A V Y + Sbjct: 150 AAAVQVLAYEVR 161 >gi|262183385|ref|ZP_06042806.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] Length = 224 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 6/193 (3%) Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146 LP + P+ + + G R L + +++ + N Sbjct: 30 LPEGPEAEKYDPELLAE--GDRRNVVDAYRYWTREAIREDIDKRRHALHIAIENFENDSN 87 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IG ++R+A AF+ D + R + + L H + A Q + Sbjct: 88 IGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLMHHTDVSELMAWAADQDLTVVA 147 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + ++ L+ G EG G+ P+ Q+ A + G +++N Sbjct: 148 IDNTPGCVPLET----AELPERCLLLFGQEGPGVSPEAQDAAVMTCSIAQFGSTRSINAG 203 Query: 267 NAAAVALYITQNH 279 AA +A++ Sbjct: 204 VAAGIAMHAWIRQ 216 >gi|254457964|ref|ZP_05071391.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD 1] gi|207085357|gb|EDZ62642.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD 1] Length = 136 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 10/97 (10%), Positives = 31/97 (31%), Gaps = 1/97 (1%) Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + + + + ++ ++ + KP + + + G+E G+ Sbjct: 31 YWDKLDLHVWESIEEFFEKNTITDNAHFATTKTDKPYFEAEFKEGDFIFFGSETAGIPEN 90 Query: 244 TQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN++ + + LY Sbjct: 91 ILNAHKEQNITIPMTKEGRSLNLAISTGIVLYDAIRQ 127 >gi|118100282|ref|XP_415864.2| PREDICTED: similar to RNA methyltransferase like 1 [Gallus gallus] Length = 407 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 4/67 (5%) Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSNAAAVAL 273 + + A+++G E GL P A + + + +LN + AAA+ L Sbjct: 322 QYYYENWIQSPAAVVVGGETHGLSPDALHLAASTGGKRLVIPVVPGVDSLNSAVAAAIVL 381 Query: 274 YITQNHF 280 + + Sbjct: 382 FEGKRQL 388 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 58/167 (34%), Gaps = 2/167 (1%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 Y K R K+ + + + + L G+ + AL + +T L Sbjct: 73 YEKASPGDRSLGKVVTIAKSRSFRDRHGKVLLEGLRLIRDALQAGAAPRALFFSTAEHLR 132 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 L + V + I A + + + P + ++++ D Sbjct: 133 ELPP--APLKGARLVRVRFEDIKCWSDVVAPQGMIGIFSKPDHAKMSYPTAQLPIVLICD 190 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 ++ DP N+G ILRSA C+ ++ TK + ++ GA Sbjct: 191 NIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVLRAGMGAHFR 237 >gi|323704896|ref|ZP_08116473.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium xylanolyticum LX-11] gi|323535822|gb|EGB25596.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium xylanolyticum LX-11] Length = 156 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGII--KAL 263 + ++ K + D+ ++ G E GL +E + M + ++L Sbjct: 74 CKYYLATTKGKHFYHEVKYEDESYILFGKESAGLPQWLREKYEDDCIRIPMNEVKAERSL 133 Query: 264 NVSNAAAVALYITQNHF 280 N+SN+ A+ +Y Sbjct: 134 NLSNSVAIVVYEALKQL 150 >gi|269468203|gb|EEZ79896.1| rRNA methylase [uncultured SUP05 cluster bacterium] Length = 152 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 1/56 (1%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + G E +GL + + L M ++LN+SN ++ Y Sbjct: 91 YQSGDSFLFGPETRGLPREILDQ-YQGITLPMQAESRSLNLSNCVSIVAYEAWRQL 145 >gi|213026633|ref|ZP_03341080.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 105 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 22/41 (53%) Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + A + M G++++LNVS A+A+ LY Q Sbjct: 1 MTQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 41 >gi|66824597|ref|XP_645653.1| hypothetical protein DDB_G0271370 [Dictyostelium discoideum AX4] gi|60473876|gb|EAL71815.1| hypothetical protein DDB_G0271370 [Dictyostelium discoideum AX4] Length = 310 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 27/48 (56%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++KIAL+ G E G+ + + +L M G +++ N+S + A+ L Sbjct: 211 DEKIALVFGNESNGISELMRSLSDRRFYLPMVGFVESFNISVSVAMTL 258 >gi|304317839|ref|YP_003852984.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779341|gb|ADL69900.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 156 Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%) Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGII--KALNVSNAAAVALY 274 + D ++ G E GL +E + M + ++LN+SN+ A+ +Y Sbjct: 85 HFYHEVKYEDDSYILFGKESAGLPQWLREMYEDDCIRIPMNEVKAERSLNLSNSVAILVY 144 Query: 275 ITQNHF 280 Sbjct: 145 EALKQL 150 >gi|332992265|gb|AEF02320.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Alteromonas sp. SN2] Length = 255 Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 27/72 (37%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + + L QE+ N +AL+ G E GL + + + +LN+ Sbjct: 86 HSWPMLGPRECGEKLVQEVSNFPVALVFGRENSGLSNEELQQCHFHMCIPANPEYSSLNL 145 Query: 266 SNAAAVALYITQ 277 + A Y + Sbjct: 146 AAAVQTLCYEIR 157 >gi|331703597|ref|YP_004400284.1| tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802152|emb|CBW54306.1| Hypothetical tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 181 Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + +++ + + + II + + + SA+ Sbjct: 1 MNKRKINIVLYQPEIAQNVGAIMRTCVAINARLHIIEPLGFIFDDRHLSRPSANEYKYVD 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246 + + F + ND + L+ G E G+ E Sbjct: 61 CIRYDDWNDFITKHPNVTLFCLSRYGQKPISDFDFSKINDNVYLVFGKESTGIAKPILKE 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M ++LN++N +A Y Sbjct: 121 HYNTTFRIPMISETRSLNIANTVGIASYEVLRQ 153 >gi|313497208|gb|ADR58574.1| RNA methyltransferase [Pseudomonas putida BIRD-1] Length = 283 Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + + H+ +LN++ A V Y + Sbjct: 142 IALVFGREHAGLTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVR 190 >gi|295135563|ref|YP_003586239.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] gi|294983578|gb|ADF54043.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] Length = 189 Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 71/160 (44%), Gaps = 3/160 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 R + ++++LD++ +NIG++ R+A AF + + + + K+A GA Sbjct: 18 EFKEARKTPIIVILDNIRSLNNIGSVFRTADAFLIEKVYLCGITAKPPHKDIQKTALGAT 77 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLR 241 E + + + + D ++K+ + + + K + KIA+I G E KG++ Sbjct: 78 ETVVWEHVEDTLDLVEKLKEDNIKVFSIEQAEGAVMLNNFKPEIGEKIAVIFGNEVKGVQ 137 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 K + + + G +LN+S + V L+ + Sbjct: 138 QKVVSASDGVIEIPQAGSKHSLNISVSTGVILWDLYSKLK 177 >gi|332520270|ref|ZP_08396732.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] gi|332043623|gb|EGI79818.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] Length = 166 Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%) Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 IA+++G E G+ + ++ H+ M G ++NV A VALY Sbjct: 102 PIHTFNVPTKKPIAIVIGDENFGISNTALKQTDAIIHIDMFGQNSSMNVVQATTVALYEI 161 Query: 277 QNHF 280 Sbjct: 162 TKQL 165 >gi|145636678|ref|ZP_01792345.1| rRNA methylase [Haemophilus influenzae PittHH] gi|145270204|gb|EDK10140.1| rRNA methylase [Haemophilus influenzae PittHH] gi|301169483|emb|CBW29084.1| predicted rRNA methylase [Haemophilus influenzae 10810] Length = 160 Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + T + L++ Q L+ G E +G+ Sbjct: 59 RHKTFEAFLESEKPKRLFALTTKGSPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148 >gi|85059749|ref|YP_455451.1| putative RNA methyltransferase [Sodalis glossinidius str. 'morsitans'] gi|123519073|sp|Q2NS29|TRMJ_SODGM RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|84780269|dbj|BAE75046.1| putative RNA methyltransferase [Sodalis glossinidius str. 'morsitans'] Length = 255 Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 23/71 (32%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + QE +AL+ G E GL + + +LN++ Sbjct: 87 PWPMLEPRECGVKSIQEAAQAPVALLFGRERVGLTNDELQKCHFHVQIPANHEYSSLNLA 146 Query: 267 NAAAVALYITQ 277 A + Y + Sbjct: 147 MAVQILAYEVR 157 >gi|320537986|ref|ZP_08037891.1| RNA methyltransferase, TrmH family, group 1 [Treponema phagedenis F0421] gi|320145143|gb|EFW36854.1| RNA methyltransferase, TrmH family, group 1 [Treponema phagedenis F0421] Length = 240 Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 K A++ G E GL K + + ++ +LN+S+A + Y F+ Sbjct: 111 GKAAIVFGNERTGLTDKELDICSLAINIPSAQNFPSLNLSHAVQIICYELFRKFS 165 >gi|330965901|gb|EGH66161.1| RNA methyltransferase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 257 Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPTFSSLNLAAAVQVLSYEVR 158 >gi|330872894|gb|EGH07043.1| RNA methyltransferase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 257 Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPTFSSLNLAAAVQVLSYEVR 158 >gi|326791033|ref|YP_004308854.1| RNA methyltransferase, TrmH family, group 2 [Clostridium lentocellum DSM 5427] gi|326541797|gb|ADZ83656.1| RNA methyltransferase, TrmH family, group 2 [Clostridium lentocellum DSM 5427] Length = 163 Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 49/148 (33%), Gaps = 3/148 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I R+ A + + + ++ + Sbjct: 1 MMHIVLHEPEIPQNTGNIARTCAATGATLHLIEPLGFSLDEKQIKRAGLDYWHLVNVQTY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 + + L+K + S ++ ++ G E G+ + + + Sbjct: 61 KDYEEFLEKNNYPKVYMATTKSRQTYTD--VSYEEECYIMFGKETAGIPEEILLDNKETC 118 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN+SN+ A+ +Y Sbjct: 119 IRVPMISEARSLNLSNSVAIVIYEALRQ 146 >gi|28868627|ref|NP_791246.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato str. DC3000] gi|28851865|gb|AAO54941.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae pv. tomato str. DC3000] gi|331019394|gb|EGH99450.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 257 Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPTFSSLNLAAAVQVLSYEVR 158 >gi|307543985|ref|YP_003896464.1| RNA methyltransferase, TrmH family, group 1 [Halomonas elongata DSM 2581] gi|307216009|emb|CBV41279.1| RNA methyltransferase, TrmH family, group 1 [Halomonas elongata DSM 2581] Length = 247 Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++AL+ G E GL + + H+ +LN++ A V Y + Sbjct: 109 QGRVALVFGREDSGLTNTEMQRCHAHVHIPTNPDFSSLNLAAAVQVLAYECR 160 >gi|158319987|ref|YP_001512494.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs] gi|158140186|gb|ABW18498.1| RNA methyltransferase, TrmH family, group 2 [Alkaliphilus oremlandii OhILAs] Length = 156 Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 48/152 (31%), Gaps = 4/152 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I R+ A + + + ++ E + Sbjct: 1 MLHVVLLEPEIPQNTGNIARTCAATGSVLHLIGPMGFSIDEKHVKRAGLDYWELLDLRYY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 + + L K ++ + ++ G E G+ E + Sbjct: 61 DSYEEFLSKNPEATIYYATTKAEKAHSE-MVYPEENCYIMFGKETAGIPKNILNENKETC 119 Query: 252 AHLHMP--GIIKALNVSNAAAVALYITQNHFA 281 + M ++LN+SN+ A+ +Y + Sbjct: 120 IRIPMVDLEKARSLNLSNSVAIVVYEVLRQYN 151 >gi|89889558|ref|ZP_01201069.1| tRNA/rRNA methyltransferase, SpoU family [Flavobacteria bacterium BBFL7] gi|89517831|gb|EAS20487.1| tRNA/rRNA methyltransferase, SpoU family [Flavobacteria bacterium BBFL7] Length = 175 Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 71/149 (47%), Gaps = 2/149 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + L++VLD+V +NIG++ RSA A+ + I + + K+A GA E + + Sbjct: 21 DKTPLIIVLDNVRSLNNIGSVFRSADAYRVEKIYLCGITAQPPHKDIRKTALGATETVAW 80 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQET 247 + D +++++ G T + + K K+A+++G E KG++ + ++ Sbjct: 81 EYRDHTIDIIKELNEQGVTTCAIEQAEDSVSLRGFKPSTKKVAVVMGNEVKGVQQEVVDS 140 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ L G +LN+S + +Y Sbjct: 141 CDTVIELEQYGTKHSLNISVCTGIVIYDL 169 >gi|195053324|ref|XP_001993576.1| GH20351 [Drosophila grimshawi] gi|193895446|gb|EDV94312.1| GH20351 [Drosophila grimshawi] Length = 1157 Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 24/60 (40%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +K L+LG E G+ + G++++LNV ++ ++ +K Sbjct: 1097 FKFPEKCILLLGHEKHGIPVDLIALLDFAVEIPQFGVVRSLNVHVTGSLFIWEYCKQHSK 1156 >gi|68074789|ref|XP_679311.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56500033|emb|CAH94615.1| hypothetical protein PB000715.00.0 [Plasmodium berghei] Length = 494 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 73/225 (32%), Gaps = 8/225 (3%) Query: 60 ALNNPSRKIFQ----LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115 A N K + ++ + + + + F + K+ Sbjct: 271 ASENGQEKKKKTTSQIINGEACFNKSSENIDYDKNFENFLKQTKK---NYQKKFDPIDNI 327 Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESA 174 +E + + L+++ ++ N+ + R+ F+ ++ + Sbjct: 328 IEINNEFRKKYQLRKKNNLIVIASLIDKVPNLAGLCRTCEIFNVKKLLLSNINIVKDFQF 387 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 S + +I ++ ++ L K ++ K L I + LILG Sbjct: 388 QKISSTANKWMNIQELKKKDIIKYLIKKKKKYSIIGLEQTNDSKRLNDFIFPENCILILG 447 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 E +GL + GII++LNV +AA+ +Y Sbjct: 448 DEKEGLPSSILLLLHHCVEIPGHGIIRSLNVHVSAAITIYEYFKQ 492 >gi|68249362|ref|YP_248474.1| putative RNA methyltransferase [Haemophilus influenzae 86-028NP] gi|145638435|ref|ZP_01794045.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittII] gi|319897735|ref|YP_004135932.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031] gi|329122776|ref|ZP_08251348.1| RNA methyltransferase [Haemophilus aegyptius ATCC 11116] gi|68057561|gb|AAX87814.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 86-028NP] gi|145272764|gb|EDK12671.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittII] gi|309751573|gb|ADO81557.1| Putative RNA methylase [Haemophilus influenzae R2866] gi|309973738|gb|ADO96939.1| Putative RNA methylase [Haemophilus influenzae R2846] gi|317433241|emb|CBY81616.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031] gi|327472040|gb|EGF17478.1| RNA methyltransferase [Haemophilus aegyptius ATCC 11116] Length = 160 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + T + L++ Q L+ G E +G+ Sbjct: 59 RHKTFEAFLESEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPMEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148 >gi|296273391|ref|YP_003656022.1| tRNA/rRNA methyltransferase (SpoU) [Arcobacter nitrofigilis DSM 7299] gi|296097565|gb|ADG93515.1| tRNA/rRNA methyltransferase (SpoU) [Arcobacter nitrofigilis DSM 7299] Length = 154 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 45/151 (29%), Gaps = 1/151 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N+G I R A A +C + + + A + Sbjct: 1 MFNIVLLEPRIPGNVGTIGRLAFAMNCRLHLIKPYGFGEITEKEVRRAGLDYWFDLDVTE 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 + + + ++ +K+ G E GL + Sbjct: 61 YENIEDFWSKNPLNDRHFFATTKTKQVYFDAKYEVGDYFYFGREDAGLPEDLLVKNEKGC 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M ++LN++N+ ++ Y K Sbjct: 121 ITIPMTNDARSLNMANSVSIVAYEALRQNFK 151 >gi|256383727|gb|ACU78297.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12] gi|256384558|gb|ACU79127.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12] gi|296455265|gb|ADH21500.1| rRNA Methylase [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 181 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + +++ + + + II + + + SA+ Sbjct: 1 MNKRKINIVLYQPEIAQNVGAIMRTCVAINARLHIIEPLGFIFDDRHLSRPSANEYKYVD 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246 + + F + ND + L+ G E G+ E Sbjct: 61 CIRYDDWNDFITKHPNITLFCLSRYGQKPISDFDFSKINDNVYLVFGKESTGIAKPILKE 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M ++LN++N +A Y Sbjct: 121 HYNTTFRIPMISETRSLNIANTVGIASYEVLRQ 153 >gi|20093957|ref|NP_613804.1| rRNA methylase [Methanopyrus kandleri AV19] gi|19886913|gb|AAM01734.1| rRNA methylase [Methanopyrus kandleri AV19] Length = 234 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 29/52 (55%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +KIA++ G E +GLR E + H+ +++N+S++ AV LY + Sbjct: 103 EKIAVVFGPEDRGLRTWEVELCDATLHIPTSEEYRSMNLSHSVAVVLYELKK 154 >gi|300812741|ref|ZP_07093148.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496281|gb|EFK31396.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 185 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 231 LILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G E GL ++ A + M I+A N+SN+AA+ ++ Sbjct: 102 FVFGRETTGLPETFMRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQ 151 >gi|325125349|gb|ADY84679.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 185 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 231 LILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G E GL ++ A + M I+A N+SN+AA+ ++ Sbjct: 102 FVFGRETTGLPETFMRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQ 151 >gi|195978738|ref|YP_002123982.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975443|gb|ACG62969.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 199 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + +L Sbjct: 36 VVLFQPQIPQNTGNIARTCAATNTPLHIIRPMGFPIDDRKMKRAGLDYWDKLDIRFYDHL 95 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 + L + + + + + G E GL ++ A + Sbjct: 96 DEFLAQCDGSLHVISKFADQVYSDKDYNDRQSH-YFLFGREDTGLPELFMRQYADRALRI 154 Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279 M +++LNVSNA + +Y Sbjct: 155 PMNDEHVRSLNVSNAVCMIVYEALRQ 180 >gi|195056077|ref|XP_001994939.1| GH13300 [Drosophila grimshawi] gi|193892702|gb|EDV91568.1| GH13300 [Drosophila grimshawi] Length = 1158 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 24/60 (40%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +K L+LG E G+ + G++++LNV ++ ++ +K Sbjct: 1098 FKFPEKCILLLGHEKHGIPVDLIALLDFAVEIPQFGVVRSLNVHVTGSLFIWEYCKQHSK 1157 >gi|145299545|ref|YP_001142386.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|142852317|gb|ABO90638.1| RNA methyltransferase, TrmH family [Aeromonas salmonicida subsp. salmonicida A449] Length = 240 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 18/52 (34%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A Y + Sbjct: 106 KHPVALVFGRERTGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQTICYEVR 157 >gi|15828774|ref|NP_326134.1| tRNA/rRNA methyltransferase [Mycoplasma pulmonis UAB CTIP] gi|14089717|emb|CAC13476.1| TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pulmonis] Length = 174 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 50/155 (32%), Gaps = 7/155 (4%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I+R+ A S I L +SA+G L + Sbjct: 1 MINIVLYQPEIPPNTGNIIRTCFATSSKLHIIKPIAFDLNPRFLKRSAAGHLLSEIQHEV 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK------NDKIALILGAEGKGLRPKTQ- 245 + + + K + + K I + G E G+ K Sbjct: 61 HDSYNDFLAKYQNENIFYITRYSQKSYSDIDFKLETFDGKKDIFFVFGTESTGIPKKILS 120 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M ++LN++N+ V +Y Sbjct: 121 QNIDKTLRIPMAPENRSLNLANSVVVIIYECLRQL 155 >gi|237739099|ref|ZP_04569580.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31] gi|229423699|gb|EEO38746.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31] Length = 113 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 P + +K A+I G EG+G+ + + + + ++LNV+ A+A+ LY + Sbjct: 49 PYNKIKLKEKNAVIFGNEGRGICDEFVSISDCKTVIPILSNTESLNVAVASAIILYKFR 107 >gi|315501742|ref|YP_004080629.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5] gi|315408361|gb|ADU06478.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5] Length = 207 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 4/149 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + +++ NIG ++R+A AF + R + + + H P Sbjct: 55 RRHDFHVAIENWQHDFNIGTVVRNANAFLAAEVHIVGRRRWNRRGAMVTDRYQHVRHHPT 114 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I +++ G + S + + + L+ G EG GL + Sbjct: 115 IEEFVAWARDERLPVVGIDNLPGSRPMET----AVLPRRCVLLFGQEGPGLSAVARSACD 170 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ + G +++N A+ +A++ Sbjct: 171 ALFSIAQYGSTRSINAGVASGIAMHAWIR 199 >gi|34499100|ref|NP_903315.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472] gi|34104951|gb|AAQ61307.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC 12472] Length = 244 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 22/51 (43%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +AL+ G E GL + E + + +LN++ A V Y +H Sbjct: 109 VALVFGNETFGLSIEEVEQCNRLVTIPGNPDYFSLNLAMAVQVMTYELFSH 159 >gi|310793697|gb|EFQ29158.1| SpoU rRNA methylase [Glomerella graminicola M1.001] Length = 588 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLH---MPGIIKALNVSNAAAVAL 273 + LILG EG GL ++ A+ + M + +LNVS A A+ Sbjct: 507 KEPTILILGNEGSGLPYDIRKKASREITIPRMVMSSSVDSLNVSVATALLC 557 Score = 40.6 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 9/114 (7%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA--- 77 + + K+ F ++T+ +G V AAL N RK+++L + + Sbjct: 246 RRSEDDDSYAKRSSDFPVSVQYTTAASQFL-FGRSVVKAALKNSKRKLYRLYVYQGSNKN 304 Query: 78 ---LARLDWDANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 + V + Q + + K H GL +E +PL L Sbjct: 305 TTKDDDWILASAEKKNIKVTRIYENDQKLLDKMSKGRPHNGLVIEASPLPQLPL 358 >gi|297619714|ref|YP_003707819.1| TrmH family RNA methyltransferase [Methanococcus voltae A3] gi|297378691|gb|ADI36846.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus voltae A3] Length = 246 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GLR + E + + +N+S+A +V LY Sbjct: 111 LKGNLAIVFGREDDGLRNEDVELCDLLVSIPTCSNYPIMNLSHAVSVILYELY 163 >gi|28210123|ref|NP_781067.1| rRNA methyltransferase [Clostridium tetani E88] gi|28202559|gb|AAO35004.1| rRNA methyltransferase [Clostridium tetani E88] Length = 162 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 2/75 (2%) Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHM-PGIIKALNVS 266 ++ S K + ++ G E GL +E + + M ++LN+S Sbjct: 83 FYFSTTHSTKTYSDVEFEEGDFIVFGRETSGLPDYVREDNRDTCIKVPMIKSSTRSLNLS 142 Query: 267 NAAAVALYITQNHFA 281 N A+ Y Sbjct: 143 NTVAIVTYEALRQMN 157 >gi|104773701|ref|YP_618681.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513698|ref|YP_812604.1| rRNA methylase (SpoU class) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103422782|emb|CAI97421.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093013|gb|ABJ58166.1| Predicted rRNA methylase (SpoU class) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 185 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 231 LILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G E GL ++ A + M I+A N+SN+AA+ ++ Sbjct: 102 FVFGRETTGLPETFMRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQ 151 >gi|117618072|ref|YP_856281.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559479|gb|ABK36427.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 241 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 19/54 (35%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +AL+ G E GL + + +LN++ A Y + H Sbjct: 106 QHPVALVFGRERTGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQTLCYEVRMH 159 >gi|145634823|ref|ZP_01790531.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittAA] gi|145267989|gb|EDK07985.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittAA] Length = 160 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + T + L++ Q L+ G E +G+ Sbjct: 59 RHKTFEAFLESEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPMEQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148 >gi|296158968|ref|ZP_06841796.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. Ch1-1] gi|295890843|gb|EFG70633.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. Ch1-1] Length = 278 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 27/52 (51%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 126 HGEIALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELR 177 >gi|254491749|ref|ZP_05104928.1| RNA methyltransferase, TrmH family, group 1 [Methylophaga thiooxidans DMS010] gi|224463227|gb|EEF79497.1| RNA methyltransferase, TrmH family, group 1 [Methylophaga thiooxydans DMS010] Length = 253 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N IA++ G E GL + + + ++ +LN++ A V Y + Sbjct: 119 NTHIAIVFGREHSGLSNEELDRCQYLINIPANPDYSSLNLAAAVQVLAYELK 170 >gi|91784181|ref|YP_559387.1| RNA methyltransferase TrmH, group 1 [Burkholderia xenovorans LB400] gi|91688135|gb|ABE31335.1| RNA methyltransferase TrmH, group 1 [Burkholderia xenovorans LB400] Length = 278 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 27/52 (51%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 126 HGEIALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELR 177 >gi|145593291|ref|YP_001157588.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440] gi|145302628|gb|ABP53210.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440] Length = 207 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 22/54 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L+ G EG GL + + + G +++N A+ +A++ Sbjct: 146 LPRQCVLLFGQEGPGLSDPARAACDQLFSIAQYGSTRSINAGVASGIAMHAWIR 199 >gi|302848076|ref|XP_002955571.1| hypothetical protein VOLCADRAFT_35411 [Volvox carteri f. nagariensis] gi|300259194|gb|EFJ43424.1| hypothetical protein VOLCADRAFT_35411 [Volvox carteri f. nagariensis] Length = 148 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+LG E G+ + M G+ ++LN + A+A++ Sbjct: 92 FTFPQRCLLLLGNEQSGVPQHLIAMLDKCVEIPMLGVTRSLNAHVSGAMAVWQYVQQ 148 >gi|300311053|ref|YP_003775145.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1] gi|300073838|gb|ADJ63237.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 275 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 22/50 (44%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + + ++ ++ +LN+S A V Y + Sbjct: 119 NAALLFGNERFGLPNEVVQKCNALLNIPANPEYSSLNLSQAVQVLAYECR 168 >gi|86134820|ref|ZP_01053402.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] gi|85821683|gb|EAQ42830.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] Length = 177 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +K A+++G E KG++ + + + G +LN+S V ++ Sbjct: 119 LAEKYAIVMGNEVKGVQQEVINASDFCIEIPQLGTKHSLNISVTTGVVIWDL 170 >gi|150391330|ref|YP_001321379.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus metalliredigens QYMF] gi|149951192|gb|ABR49720.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus metalliredigens QYMF] Length = 165 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 4/149 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P N G I R+ VA + + + ++ E + + Sbjct: 11 LHVVLLEPEIPQNTGNIARTCVATGATLHLIGPMGFSIDEKQVKRAGLDYWE-LLDLNYY 69 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252 + + + + K E D ++ G E G+ + + + Sbjct: 70 DRYADFLEKNKHPKVYCATTKAQKNHSEVAYPQDDTYIMFGKETAGIPKEILKDHEETCI 129 Query: 253 HLHMP--GIIKALNVSNAAAVALYITQNH 279 + M ++LN+SNA ++ +Y Sbjct: 130 RIPMVDIERARSLNLSNAVSIVVYEVLRQ 158 >gi|330830082|ref|YP_004393034.1| TrmH family RNA methyltransferase [Aeromonas veronii B565] gi|328805218|gb|AEB50417.1| RNA methyltransferase, TrmH family [Aeromonas veronii B565] Length = 216 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 18/52 (34%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A Y + Sbjct: 82 QHPVALVFGRERTGLTNDELQKCHYHVAIPANPDYSSLNLAMAVQTLCYEVR 133 >gi|86610208|ref|YP_478970.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558750|gb|ABD03707.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 276 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 17/46 (36%) Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + G E +GL + + +LN++ A A+ Y Sbjct: 122 VFGPEDRGLSNEELALCHRQIQIPTDATYPSLNLAQAVAICCYELY 167 >gi|296394298|ref|YP_003659182.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985] gi|296181445|gb|ADG98351.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM 44985] Length = 154 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + L+ G E GL + + A + M ++LN++NAA +A+Y Sbjct: 86 HDNIAYQAGDVLLFGPEPTGLPAEVAHHPRVSDRARIPMLAGRRSLNLANAATIAVYEAW 145 Query: 278 NH 279 Sbjct: 146 RQ 147 >gi|145640854|ref|ZP_01796436.1| rRNA methylase [Haemophilus influenzae R3021] gi|145274368|gb|EDK14232.1| rRNA methylase [Haemophilus influenzae 22.4-21] Length = 160 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + T + L++ Q L+ G E +G+ Sbjct: 59 RHKTFEAFLESEKPKRLFALTTKGSPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMKQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148 >gi|146308529|ref|YP_001188994.1| RNA methyltransferase [Pseudomonas mendocina ymp] gi|145576730|gb|ABP86262.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas mendocina ymp] Length = 262 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V Y + Sbjct: 113 VALVFGREYAGLTNEELQRCQYHVHIPSNPEFSSLNLAAAVQVLAYEVR 161 >gi|320160887|ref|YP_004174111.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1] gi|319994740|dbj|BAJ63511.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1] Length = 193 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + I L+ G E G+ P E ++ L M GI +LNV+ A +ALY Sbjct: 137 SRPILLVAGNEVTGIDPDIFELCDTVTFLPMFGIKNSLNVAVATGIALY 185 >gi|196016798|ref|XP_002118249.1| hypothetical protein TRIADDRAFT_5097 [Trichoplax adhaerens] gi|190579150|gb|EDV19252.1| hypothetical protein TRIADDRAFT_5097 [Trichoplax adhaerens] Length = 187 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 21/57 (36%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+LG E +G+ + + G I++ NV AV ++ Sbjct: 130 YDFAKRSILLLGNEREGIPVPLLKMVDECVAIPQLGTIRSFNVHVTGAVLIWEYSKQ 186 >gi|124007000|ref|ZP_01691829.1| tRNA/rRNA methyltransferase [Microscilla marina ATCC 23134] gi|123987453|gb|EAY27173.1| tRNA/rRNA methyltransferase [Microscilla marina ATCC 23134] Length = 176 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 63/153 (41%), Gaps = 3/153 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 +++VLD++ HN+G+ R++ AF + I + + K+A GA Sbjct: 16 DFKETPKKPVVIVLDNIRSMHNVGSSFRTSDAFLVEKIYLCGITAKPPHREIQKTALGAT 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLR 241 E + + ++ +AL + G+ + + K + K A + G E G+ Sbjct: 76 ESVAWQHVATTEEALATLKQEGWTIVAIEQVDKSVSLEKFNFEADKKYAFVFGNEVFGVD 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + A + G +LN+S + V ++ Sbjct: 136 EEVVKQADVCIEIPQFGTKHSLNISVSMGVVIW 168 >gi|220904214|ref|YP_002479526.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868513|gb|ACL48848.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 250 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI---TQNHF 280 +++AL+ G E +GL + + + +LN++ A + LY + Sbjct: 112 ERVALVFGPEDRGLNNEEITHCHKLVTIPTDPAASSLNLAQAVLLLLYECADALRNR 168 >gi|116620037|ref|YP_822193.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus Ellin6076] gi|116223199|gb|ABJ81908.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus Ellin6076] Length = 252 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 22/51 (43%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +AL+ G+E GL + + + G ++N+ A A+ LY Sbjct: 123 PVALLFGSEKFGLSNEDLSHCHWLMRIPTVGQDLSMNLGQAVALCLYELAR 173 >gi|307824418|ref|ZP_07654643.1| RNA methyltransferase, TrmH family, group 1 [Methylobacter tundripaludum SV96] gi|307734402|gb|EFO05254.1| RNA methyltransferase, TrmH family, group 1 [Methylobacter tundripaludum SV96] Length = 246 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 26/69 (37%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + +K+A++ G E GL+ + + + +LN++ Sbjct: 88 WPEMTPRECAEKVLINEPGNKVAIVFGRENSGLKNHELDLCHFLLRIPCNSEYSSLNIAA 147 Query: 268 AAAVALYIT 276 AA V Y Sbjct: 148 AAQVVCYEL 156 >gi|225707400|gb|ACO09546.1| Hypothetical tRNA/rRNA methyltransferase slr1673 [Osmerus mordax] Length = 454 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 4/65 (6%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSNAAAVALYI 275 + AL++G E GL + + A + + + +LN + AA++ L+ Sbjct: 377 YHERWAQSNTALVIGGETHGLSLEALQLAEKTLGQRLFIPVVPWVDSLNSAMAASILLFE 436 Query: 276 TQNHF 280 + Sbjct: 437 GRRQL 441 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 2/180 (1%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 + K + ++ S + + + L G + AL + ++ Sbjct: 113 LRFEKASPGDKRLARLVSVARSRTYRELQGKILLEGRRLICDALAAGANPQMVFFSSVEK 172 Query: 78 LARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLL 135 L+ L D VK + +V + V + L D + ++ L Sbjct: 173 LSELPLDKLKRATLVKVKFEDIKIWSDLVAPQGVIAIFSRPDPSRLVFPRDQMGQSVPLS 232 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++ D+V DP N+G ILR A A C ++ TK + + +SA GA +P + Sbjct: 233 LICDNVRDPGNLGTILRCAAAAGCQDVLLTKGCVDAWEPKVLRSAMGAHFRLPIFPSLDW 292 >gi|108758120|ref|YP_629729.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Myxococcus xanthus DK 1622] gi|108462000|gb|ABF87185.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Myxococcus xanthus DK 1622] Length = 225 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 45/145 (31%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R +VLD + D N+ A+LR+ + + + Sbjct: 36 HRTRNFTVVLDRLEDSFNMAAVLRTCESMGVQEVHIIINPEAPFVPNSRVAQGCDKWLDV 95 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + + L + K+AL+ G E +G+ Sbjct: 96 KLYRTFAECREHLKSRGFSLYASAIQEGATSLYTLRFDGKMALVFGNERRGVSEDVLAGV 155 Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273 + M G ++LN+S AA+ + Sbjct: 156 DGTFWVPMKGFSQSLNISAAASACI 180 >gi|315125525|ref|YP_004067528.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913] gi|315014038|gb|ADT67376.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913] Length = 241 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A Y T+ Sbjct: 107 NGPVALVFGRENSGLTNEELQLCNYHVCIPANPEYSSLNLAMAVQTLCYETR 158 >gi|237748613|ref|ZP_04579093.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes OXCC13] gi|229379975|gb|EEO30066.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes OXCC13] Length = 257 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G+E GL + E ++ ++ +LN++ A + Y + Sbjct: 119 NCALVFGSERYGLSNEDVEQCHALINIPANPDYSSLNLAQAIQILAYECR 168 >gi|330975889|gb|EGH75955.1| RNA methyltransferase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 254 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158 >gi|330950802|gb|EGH51062.1| RNA methyltransferase [Pseudomonas syringae Cit 7] Length = 254 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158 >gi|330936999|gb|EGH41095.1| RNA methyltransferase [Pseudomonas syringae pv. pisi str. 1704B] Length = 254 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158 >gi|330895873|gb|EGH28159.1| RNA methyltransferase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 255 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158 >gi|328779499|ref|XP_001120040.2| PREDICTED: RNA methyltransferase-like protein 1-like [Apis mellifera] Length = 417 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 38/335 (11%), Positives = 90/335 (26%), Gaps = 57/335 (17%) Query: 5 SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVH--------- 55 K E + K + + KL+ N + + + + + + + L G Sbjct: 78 ETKNKETEITAKKNKFMKLKENDKIITSLMTKLKSRKKREKDNEIILEGQRLITDALKSG 137 Query: 56 -----------TVSAALNNPSRKIFQ---------------------LLATKNALARLDW 83 ++ A L P + T + + Sbjct: 138 VIPSVIIYNDPSIIATLKLPEEVKLYKVPYKTIQLWSALTTSPGLLGIFKTPDVNNNIPV 197 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--------NSQLL 135 + LP + + + A G L + + QL Sbjct: 198 NNALPLTIICDNIRDPGNLGSIMRVATAVGCEKLILMKGCVDLWDPKVLRSAAGTHFQLP 257 Query: 136 MVLDHVNDPH----NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 ++ D + + + D ++ +S++ + + Sbjct: 258 ILAFPTWDEIPSVITEDSNIFITDSNFGDEFLSYYSSDILQSSLQIFDINPEEFKSKFSL 317 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR----PKTQET 247 N D + + + L + K +IL E +GL +E Sbjct: 318 NDNKEDEIIPKNKNMMRQFMLKFPIIPYYSIDYTKKKSVIILSGETEGLNFNSYKFLKER 377 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + ++ + + +LNV A ++ ++ + F K Sbjct: 378 NSIRINIPLIKGVDSLNVGVALSIVIFEIKRQFFK 412 >gi|302185759|ref|ZP_07262432.1| RNA methyltransferase [Pseudomonas syringae pv. syringae 642] Length = 254 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158 >gi|237800027|ref|ZP_04588488.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022882|gb|EGI02939.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 171 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V Y + Sbjct: 27 VALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 75 >gi|213971532|ref|ZP_03399643.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae pv. tomato T1] gi|301386137|ref|ZP_07234555.1| RNA methyltransferase [Pseudomonas syringae pv. tomato Max13] gi|302060163|ref|ZP_07251704.1| RNA methyltransferase [Pseudomonas syringae pv. tomato K40] gi|302135106|ref|ZP_07261096.1| RNA methyltransferase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923724|gb|EEB57308.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae pv. tomato T1] Length = 257 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158 >gi|66044482|ref|YP_234323.1| RNA methyltransferase TrmH, group 1 [Pseudomonas syringae pv. syringae B728a] gi|63255189|gb|AAY36285.1| RNA methyltransferase TrmH, group 1 [Pseudomonas syringae pv. syringae B728a] gi|330969083|gb|EGH69149.1| RNA methyltransferase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 254 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158 >gi|300724149|ref|YP_003713466.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus nematophila ATCC 19061] gi|297630683|emb|CBJ91348.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus nematophila ATCC 19061] Length = 244 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 26/71 (36%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + + + + +A++ G E GL + + ++ +LN++ Sbjct: 87 PWPMVEPRECGERCVKASNHSPVAIVFGRERVGLTNEELQKCHYHLYIPTNPEYGSLNLA 146 Query: 267 NAAAVALYITQ 277 A + Y + Sbjct: 147 MAVQLVSYEIR 157 >gi|218886256|ref|YP_002435577.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757210|gb|ACL08109.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 266 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 D++A++ G E +GL E + + +LN++ A V LY Sbjct: 114 DRVAVVFGPEDRGLTNDEIEHCHRLLTIPTAPEASSLNLAQAVLVVLYE 162 >gi|302852751|ref|XP_002957894.1| hypothetical protein VOLCADRAFT_99057 [Volvox carteri f. nagariensis] gi|300256771|gb|EFJ41030.1| hypothetical protein VOLCADRAFT_99057 [Volvox carteri f. nagariensis] Length = 701 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +AL+LG+EG GL + + + M G +++LNV A V ++ Sbjct: 602 APWAGGVALVLGSEGGGLSADVRRVC-APISVPMEGAMESLNVGVAGGVLMFAI 654 >gi|268680131|ref|YP_003304562.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurospirillum deleyianum DSM 6946] gi|268618162|gb|ACZ12527.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurospirillum deleyianum DSM 6946] Length = 156 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N G+I R V C I + ++ + Sbjct: 1 MFNIVLVHPQIPQNTGSIGRMCVNADCSLHIVKPTMFEISDKTVKRAGLDYWHLLDVHVY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 +L D L+ + ++ +KKP + L G E GL + + Sbjct: 61 ESLEDFLKMHADKVERFFFATTKTKKPYFEASFQAGDFLFFGGESTGLPMELMQLKWENA 120 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++LN + +A + LY Sbjct: 121 ITIPMGKNGRSLNQATSAGIILYDAIRQ 148 >gi|145485115|ref|XP_001428566.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124395653|emb|CAK61168.1| unnamed protein product [Paramecium tetraurelia] Length = 231 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 49/159 (30%), Gaps = 8/159 (5%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + + ++L ++ P NIG I+R+A AF+ + + ++ + Sbjct: 1 MQQQFEGYLLLHNIAKPKNIGTIIRNAAAFNLTKVFMIGKQGQTKKKFQIAEGFSFFGNH 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDS-------KKPLEQEIKNDKIALILGAEGKGL 240 N + + + + + LG EG GL Sbjct: 61 GTYDQMNFHLFNNLKEAKEYFVLNNIFVCGVEIGEGSQNIITNPFKGNTVFFLGNEGTGL 120 Query: 241 RPKTQETATSMAHLHMP-GIIKALNVSNAAAVALYITQN 278 P+ + ++ +LNV A+ + + Sbjct: 121 IPEHKALCDHFVYIPQYTQKTASLNVGVASGIIFHHFAQ 159 >gi|330957512|gb|EGH57772.1| RNA methyltransferase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 254 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V Y + Sbjct: 110 VALVFGREHSGLTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158 >gi|260188421|ref|ZP_05765895.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CPHL_A] gi|289449064|ref|ZP_06438808.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CPHL_A] gi|289422022|gb|EFD19223.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CPHL_A] Length = 154 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E GL T T + M ++LN+SNAA VA+Y Sbjct: 91 YRAGDVLMFGPEPTGLDEATLADTHITGQVRIPMLAGRRSLNLSNAATVAVYEAWRQ 147 >gi|256545522|ref|ZP_05472882.1| SpoU class tRNA/rRNA methylase [Anaerococcus vaginalis ATCC 51170] gi|256398733|gb|EEU12350.1| SpoU class tRNA/rRNA methylase [Anaerococcus vaginalis ATCC 51170] Length = 243 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 84/227 (37%), Gaps = 17/227 (7%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 + + + V + N + + F + DK+ Sbjct: 27 NSFIIESIKIVEQI----PKDFECEFVFVNEDMK-----DYETNFKKIVFSNKLFDKLSL 77 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 E + L +S +++LDH+ DP N+G I+RSA AFS II Sbjct: 78 LENP-----EGVSACLKIKNQKEISSDKILLLDHIQDPGNLGTIIRSAEAFSFKDIILLN 132 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 + +++ G++ + +I + K + L+ + K ++ Sbjct: 133 SCVDIYNEKTIRASMGSIFRLNFIEVEIN---DLKDLLDKNYKLVLADMNGKSVDYYKSC 189 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 DKI L +G E G+ + + + M G I++LN + AA++ + Sbjct: 190 DKIILAIGNEANGISKSLKGLSNDFVSIKMDGRIESLNAAIAASILM 236 >gi|332519939|ref|ZP_08396403.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] gi|332044498|gb|EGI80692.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] Length = 176 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 3/160 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT---KRYSPSESAVLAKSAS 181 + +++VLD++ +NIG++ R++ AF + I + A ++ Sbjct: 16 DFKQASKTPIIIVLDNIRSLNNIGSVFRTSDAFLVEKIYLCGITATPPHKDINKTALGST 75 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 A+ + + L+ + + KN AL+ G E KG+ Sbjct: 76 DAVSWEYAKTTMEVIEKLKIKDVKICSIEQAENATMLNDFTVEKNTTYALVFGNEVKGVD 135 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + S+ + G +LN+S + V ++ + Sbjct: 136 QNIVNASDSVIEIPQFGTKHSLNISVSCGVVVWDLFSKLK 175 >gi|307107286|gb|EFN55529.1| hypothetical protein CHLNCDRAFT_133965 [Chlorella variabilis] Length = 542 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 83/292 (28%), Gaps = 43/292 (14%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 ++ K + S++ + + G V L L+ + A L Sbjct: 243 SNDAVKHCVKLRESSKYRREVGAALVSGADLVVE-LAPYCAPYRALVGLEEAQ--LPDGI 299 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 Q I + A P A + ++ LD V DP Sbjct: 300 AAERYVTATAPVMQKIAGLGSVGAGALAAEAALPPTADLLGGAPGQLRRVLALDGVQDPG 359 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--- 202 N+G +LR+A+A + + +++ GA+ +P + S Sbjct: 360 NLGTLLRTALALGWQAAVLLPGCCDPYNDKALRASRGAVFKLPLAQYSLGQWQQLVEEQR 419 Query: 203 ---------------------------------HSWGFQTIGLSSDSKKPLEQEIKNDKI 229 L+Q + + Sbjct: 420 LVPLAADPSRAAAAAAADARGTAGRDGSGSAAARQQQHGQAAAPEGDVGALQQRLAQLPV 479 Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSNAAAVALYITQN 278 L LGAEG+GL +E + G +++LNVS A A+ ++ Sbjct: 480 CLCLGAEGQGLSAGVRERC-VAVSIPQSGGGELMESLNVSAAGAILMFALSQ 530 >gi|255020949|ref|ZP_05293005.1| tRNA:Cm32/Um32 methyltransferase [Acidithiobacillus caldus ATCC 51756] gi|254969740|gb|EET27246.1| tRNA:Cm32/Um32 methyltransferase [Acidithiobacillus caldus ATCC 51756] Length = 263 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 21/49 (42%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +A++ G E GL + + + + ++LN++ A + Y Sbjct: 124 PVAILFGNERVGLSNRELDLCQCLIQIPTAEAYRSLNLAQAVQILAYEL 172 >gi|316932736|ref|YP_004107718.1| tRNA/rRNA methyltransferase SpoU [Rhodopseudomonas palustris DX-1] gi|315600450|gb|ADU42985.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris DX-1] Length = 151 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 56/144 (38%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + P N G LR + + I P+ +S L+ + +R + Sbjct: 3 IALFQPDIPQNTGTTLRFCACLNVEAHIIEPAGFPTSDRHFRRSGMDYLDQVSIVRHDSW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 Q + G + I L++ ++P ++ L+LG E G+ A + + Sbjct: 63 LKFEQWRENAGCRLILLTTKGERPYFEQRYQPTDVLMLGRESAGVPDDVAAAADARVVIP 122 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 M +++LNV+ AAA+ Sbjct: 123 MQPGLRSLNVAMAAAMVTGEALRQ 146 >gi|313157998|gb|EFR57404.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5] Length = 178 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 3/155 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + + +VLD+V N+GA R+ AF+ + I + + + K+A GA +P Sbjct: 20 MAKMPVTVVLDNVRSLQNVGAFFRTGDAFAVEHIALCGITAVPPNRDIHKTALGAELTVP 79 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQ 245 + + ++H+ G++ + + + + AL+ G E G+ Sbjct: 80 WSYYETTEACIDRLHADGYEVLAVEQVEGAVMLDVFRAAPGVKYALVFGNEVMGVGQSAV 139 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + G ++NV+ + V L+ Sbjct: 140 DRCDGAIEIPQAGTKHSINVAVSGGVVLWSFFRRI 174 >gi|121591825|ref|ZP_01679008.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80] gi|121546309|gb|EAX56591.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80] Length = 213 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 10/211 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTVPPQTIDKI 104 N +YG+H V+A L + + K RL N ++ + + +D Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL P + A LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + Q +A+++GAEG G+R T+ET Sbjct: 182 DIYQSKLTGSLAIVMGAEGDGMRRLTRETCD 212 >gi|260903735|ref|ZP_05912057.1| rRNA methylase [Brevibacterium linens BL2] Length = 147 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 21/40 (52%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 ++ A++ G EG GLR T S + M G + +LNV Sbjct: 94 PERTAIVFGTEGDGLRRSTIAACDSTVMIPMSGGVDSLNV 133 >gi|46143316|ref|ZP_00135490.2| COG0219: Predicted rRNA methylase (SpoU class) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207549|ref|YP_001052774.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae L20] gi|165975518|ref|YP_001651111.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149330|ref|YP_001967855.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250539|ref|ZP_07336736.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307244862|ref|ZP_07526961.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307249259|ref|ZP_07531256.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251582|ref|ZP_07533489.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253816|ref|ZP_07535670.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256081|ref|ZP_07537869.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258272|ref|ZP_07540015.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260513|ref|ZP_07542207.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262643|ref|ZP_07544273.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096341|gb|ABN73169.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875619|gb|ABY68667.1| probable tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914461|gb|ACE60713.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302650527|gb|EFL80686.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854307|gb|EFM86513.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306858783|gb|EFM90842.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861046|gb|EFM93052.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863300|gb|EFM95240.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865503|gb|EFM97398.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867732|gb|EFM99577.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869825|gb|EFN01608.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306872066|gb|EFN03780.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 159 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFAWDDKKLRRSGLDY--HEFVDIQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + L++ + + L+ G E +G+ + + Sbjct: 59 KYKNFEDFLERAKPKRLFALTTKGEPNHSEVSYELGDFLMFGPESRGIPMTILDNLPMSQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN AV +Y F Sbjct: 119 KIRVPMCKDSRSMNLSNTVAVVVYEAWRQF 148 >gi|300779738|ref|ZP_07089594.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC 33030] gi|300533848|gb|EFK54907.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC 33030] Length = 153 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 2/98 (2%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 H + + ++ + + D AL+ G E GL + Sbjct: 50 YHDLADVQIHEDIESCFASLIDARIFAFTTHTTRHYTDVEYRDTDALLFGTEPTGLPEEH 109 Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T + M +++N++N+AAVA Y Sbjct: 110 SHHPRVTDQLRIPMLPGRRSMNLANSAAVASYEAWRQL 147 >gi|256831713|ref|YP_003160440.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM 20603] gi|256685244|gb|ACV08137.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM 20603] Length = 186 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+ G E GL T + M +++LN++N+A++A+Y Sbjct: 123 YSPTDLLVFGPEPTGLDDAVLNHPRITGEVRIPMLPGLRSLNLTNSASIAVYEAWRQ 179 >gi|242399001|ref|YP_002994425.1| SpoU protein [Thermococcus sibiricus MM 739] gi|242265394|gb|ACS90076.1| SpoU protein [Thermococcus sibiricus MM 739] Length = 246 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + +I L+ G E +GL + + + +N+S+A AV LY K Sbjct: 105 YDGEIGLVFGRESRGLDNEELKKLDFTVTIPTSEEYPIMNLSHAVAVILYEVFKQKLK 162 >gi|83319378|ref|YP_424348.1| RNA methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283264|gb|ABC01196.1| RNA methyltransferase, TrmH family [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 181 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + +++ + + + II + + + SA+ Sbjct: 1 MNKRKINIVLYQPEIAQNVGAIMRTCVAINARLHIIEPLGFIFDDRHLSRSSANEYKYVD 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246 + + F + ND + L+ G E G+ E Sbjct: 61 CIRYDDWNDFITKHQNITLFCLSRYGQKPISDFDFSKINDNVYLVFGKESTGIAKPILKE 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M ++LN++N +A Y Sbjct: 121 HYNTTFRIPMISETRSLNIANTVGIASYEVLRQ 153 >gi|322513937|ref|ZP_08067013.1| TrmH family RNA methyltransferase [Actinobacillus ureae ATCC 25976] gi|322120232|gb|EFX92187.1| TrmH family RNA methyltransferase [Actinobacillus ureae ATCC 25976] Length = 159 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFEWDDKKLRRSGLDY--HEFVDIQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + L++ + + L+ G E +G+ ++ + Sbjct: 59 KYKNFEDFLERAKPKRLFALTTKGEPNHSEVSYELGDFLMFGPESRGIPMAILDSLPMSQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN AV +Y F Sbjct: 119 KIRVPMCKDSRSMNLSNTVAVVVYEAWRQF 148 >gi|153208365|ref|ZP_01946703.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii 'MSU Goat Q177'] gi|161831388|ref|YP_001597003.1| RNA methyltransferase [Coxiella burnetii RSA 331] gi|165919350|ref|ZP_02219436.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA 334] gi|212212468|ref|YP_002303404.1| rRNA methylase, SpoU family [Coxiella burnetii CbuG_Q212] gi|212218566|ref|YP_002305353.1| RRNA methylase, SpoU family [Coxiella burnetii CbuK_Q154] gi|120576022|gb|EAX32646.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii 'MSU Goat Q177'] gi|161763255|gb|ABX78897.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA 331] gi|165916949|gb|EDR35553.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA 334] gi|212010878|gb|ACJ18259.1| rRNA methylase, SpoU family [Coxiella burnetii CbuG_Q212] gi|212012828|gb|ACJ20208.1| RRNA methylase, SpoU family [Coxiella burnetii CbuK_Q154] Length = 240 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 23/69 (33%) Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 L + + + IA++ G E GL + + +LN++ A Sbjct: 87 PWPLKTARECAEQSVQHQGNIAIVFGRERSGLTNEELAQCQYHVTIPTEAAFSSLNLAQA 146 Query: 269 AAVALYITQ 277 + Y + Sbjct: 147 VQILTYEMR 155 >gi|303251883|ref|ZP_07338054.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247037|ref|ZP_07529091.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649313|gb|EFL79498.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856489|gb|EFM88638.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 159 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFAWDDKKLRRSGLDY--HEFVDIQ 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + L++ + + L+ G E +G+ ++ + Sbjct: 59 KYKNFEDFLERAKPKRLFALTTKGEPNHSEVSYELGDFLMFGPESRGIPMAILDSLPMSQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN AV +Y F Sbjct: 119 KIRVPMCKDSRSMNLSNTVAVVVYEAWRQF 148 >gi|124028494|ref|YP_001013814.1| rRNA methylase [Hyperthermus butylicus DSM 5456] gi|123979188|gb|ABM81469.1| rRNA methylase [Hyperthermus butylicus DSM 5456] Length = 239 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A++ G E GL + H+ LN+S+A A+ LY N Sbjct: 115 VAVVFGRESVGLTRDELAKCHLLVHIPANPNYPVLNLSHAVAILLYELYNTR 166 >gi|229844634|ref|ZP_04464773.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 6P18H1] gi|229812348|gb|EEP48038.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 6P18H1] Length = 160 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I+R + + L +S H Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + T + L++ Q L+ G E +G+ Sbjct: 59 RHKTFEAFLESEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPMKQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +++N+SN+ AV +Y Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148 >gi|169823984|ref|YP_001691595.1| rRNA methylase [Finegoldia magna ATCC 29328] gi|167830789|dbj|BAG07705.1| rRNA methylase [Finegoldia magna ATCC 29328] Length = 234 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 84/219 (38%), Gaps = 10/219 (4%) Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 + N + + ++L +++ L T+ + I+KI K+ + Sbjct: 24 ELIENKADIVEEVLISEDFNDTEKLINILKEKKIPYTISSKQINKISLKDKEYVIGVFRK 83 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + ++LD +++ N+G I+RS +AF + + + + Sbjct: 84 EKSNFQEKNH-------IILDGIDNMGNLGTIMRSMLAFGYKNLALISNTCDVYNPKVVR 136 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 ++ GA + + NL + +K L ++ L ++ +L G EG Sbjct: 137 ASMGAFFKLNIQKFDNL-EDYKKNFPDNKIYSFLLDENSNELGDVKFDEPFSLAFGNEGA 195 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 GL + + ++ + +LN+ A ++A+Y ++ Sbjct: 196 GLPKEYYNE--NKIFINQSKDVDSLNLPIACSIAMYESK 232 >gi|167563307|ref|ZP_02356223.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia oklahomensis EO147] gi|167570479|ref|ZP_02363353.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia oklahomensis C6786] Length = 291 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + + +++AH+ +LN++ A V Y + Sbjct: 137 TGDIALVFGNERTGLSNEHVDRCSAIAHIPANPAYSSLNLAQAVQVLAYELR 188 >gi|325286833|ref|YP_004262623.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489] gi|324322287|gb|ADY29752.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489] Length = 177 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 N K ALI G E KG+ + + + G +LN+S +A V ++ + Sbjct: 120 NQKYALIFGNEVKGVAQDVVTASDVVLEIPQYGTKHSLNISVSAGVVVWDLWSKL 174 >gi|260773392|ref|ZP_05882308.1| tRNA:Cm32/Um32 methyltransferase [Vibrio metschnikovii CIP 69.14] gi|260612531|gb|EEX37734.1| tRNA:Cm32/Um32 methyltransferase [Vibrio metschnikovii CIP 69.14] Length = 242 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 23/70 (32%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + E + +A++ G E GL + + + +LN++ Sbjct: 88 WPMLDPRQCGEQFAIEGQTHPVAVVFGRERTGLTNEELQLCHYHVCIPANPEYSSLNLAM 147 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 148 AVQTLCYEIR 157 >gi|145345886|ref|XP_001417430.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577657|gb|ABO95723.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 233 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL---YITQ 277 K+AL+ G E GL + ++ + M +I++L+V++AA +AL + + Sbjct: 170 GKLALVFGNEADGLSERELALCDALCSIPMGRLIESLSVTHAAVIALSRFFEAR 223 >gi|77165123|ref|YP_343648.1| RNA methyltransferase TrmH, group 1 [Nitrosococcus oceani ATCC 19707] gi|254433993|ref|ZP_05047501.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus oceani AFC27] gi|76883437|gb|ABA58118.1| RNA methyltransferase TrmH, group 1 [Nitrosococcus oceani ATCC 19707] gi|207090326|gb|EDZ67597.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus oceani AFC27] Length = 247 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + H+ +LN++ A V Y + Sbjct: 111 VAIVFGRENSGLSNLELDRCNYWVHIPSNPTYSSLNLAAAVQVMAYEVR 159 >gi|322797134|gb|EFZ19388.1| hypothetical protein SINV_11142 [Solenopsis invicta] Length = 430 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Query: 229 IALILGAEGKGLR----PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + L++G E +G+ +E + ++ + + +LNV AA + + + F Sbjct: 367 MVLVIGGETEGISLQSCKLLRERNCTRINIPLTNGVDSLNVGVAAGIVTFEMKRQFI 423 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 71/185 (38%), Gaps = 9/185 (4%) Query: 7 KKSEKIFSLKDS-----HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 K+++K +K+S Y L+ + + + + + + + L G + A+ Sbjct: 71 KENQKENEIKESTAIEQKYIALKADDKMISSLMIDVKTKKRREKNSQMLLEGSRLIEDAI 130 Query: 62 NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 + + L LP + +P +TI + + P Sbjct: 131 QAGVVPKVIFFNRLSDVLPLS----LPKEVKLYKIPYRTIQLWSNLTTSPGIIGIFEIPD 186 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 +S A L ++ D++ +P N+G+ILR+A A C+ ++ K + +SA+ Sbjct: 187 VSNKKPANDAIPLTIICDNIREPGNLGSILRAAAAVGCEKLLLMKGCVDLWEPKVVRSAT 246 Query: 182 GALEH 186 GA Sbjct: 247 GAHFR 251 >gi|159036337|ref|YP_001535590.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205] gi|157915172|gb|ABV96599.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205] Length = 207 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 22/54 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L+ G EG GL + + + G +++N A+ +A++ Sbjct: 146 LPRRCVLLFGQEGPGLSAPARAACDQLFSIAQYGSTRSINAGVASGIAMHAWIR 199 >gi|87119545|ref|ZP_01075442.1| RNA methyltransferase TrmH, group 1 [Marinomonas sp. MED121] gi|86165021|gb|EAQ66289.1| RNA methyltransferase TrmH, group 1 [Marinomonas sp. MED121] Length = 241 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFA 281 A + G E +GL + + H+ +LN+ A V Y + H A Sbjct: 107 AFVFGREDRGLTNEELQRCHYHVHIPSVESFSSLNLGAAVQVLAYELRMRHLA 159 >gi|313123301|ref|YP_004033560.1| RNA methyltransferase, trmh family, group 2 [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279864|gb|ADQ60583.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 185 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 231 LILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G E GL ++ A + M I+A N+SN+AA+ ++ Sbjct: 102 FVFGRETTGLPETFMRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQ 151 >gi|219126900|ref|XP_002183685.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404922|gb|EEC44867.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 489 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 38/108 (35%) Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + +++A + + + T Q + L D + Sbjct: 201 QHRLFAQNATEWITLREFTDTASCLHELRATGHQIWATDLSQQAVPLEKDDLQEAGHWPL 260 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 +++A++ G E G + A +L + G +LN+S A A+ + Sbjct: 261 PNQLAIVFGTEAVGCSQEMLRHADLRVYLPLRGFADSLNLSVATALVI 308 >gi|308806822|ref|XP_003080722.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri] gi|116059183|emb|CAL54890.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri] Length = 247 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K L+LG EG+GL + M G +++LNV+ A + Y Sbjct: 197 KACLVLGTEGQGLSDDALRAC-KPVAVPMSGEMESLNVAIAGGILCY 242 >gi|325916659|ref|ZP_08178919.1| rRNA methylase [Xanthomonas vesicatoria ATCC 35937] gi|325537102|gb|EGD08838.1| rRNA methylase [Xanthomonas vesicatoria ATCC 35937] Length = 235 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 89/222 (40%), Gaps = 8/222 (3%) Query: 58 SAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115 A + + +L T+ + + + + V + K+ H+G+ Sbjct: 2 QAVFKARPQALRKLYLTEARIPQFKALLAWCVAQRIGYRVVEDADLSKLAA-STHHEGVV 60 Query: 116 LETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 E + L + L + LD V +PHN GAILRS+ F G++ + Sbjct: 61 AEVLRVSPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTL 120 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 S A+ A G E +P +++ A+ ++ GF + + + ++ Sbjct: 121 GLSGAAARVAEGGAEAVPLVQLPEAPLAMTQLRQTGFAVAATLVEGGQDVFAAALPQRLV 180 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 ++GAE +G+ + + G++++LNV++A AV Sbjct: 181 YVMGAESEGMDRQFARDCDLQLSIRGSGLVESLNVASATAVF 222 >gi|257138672|ref|ZP_05586934.1| RNA methyltransferase [Burkholderia thailandensis E264] Length = 306 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA + G E GL + E +++AH+ +LN++ A V Y + Sbjct: 137 TGDIAFVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 188 >gi|195112288|ref|XP_002000706.1| GI22376 [Drosophila mojavensis] gi|193917300|gb|EDW16167.1| GI22376 [Drosophila mojavensis] Length = 1157 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 23/67 (34%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +K L+LG E G+ + G++++LNV ++ ++ Sbjct: 1090 HSTNFTDFKFPEKCVLLLGHEKHGIPVDLIALLDFAVEIPQFGVVRSLNVHVTGSLFIWE 1149 Query: 276 TQNHFAK 282 K Sbjct: 1150 YCKQHLK 1156 >gi|167621090|ref|ZP_02389721.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia thailandensis Bt4] Length = 174 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA + G E GL + E +++AH+ +LN++ A V Y + Sbjct: 5 TGDIAFVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 56 >gi|167581379|ref|ZP_02374253.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia thailandensis TXDOH] Length = 306 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA + G E GL + E +++AH+ +LN++ A V Y + Sbjct: 137 TGDIAFVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 188 >gi|83720786|ref|YP_442465.1| RNA methyltransferase [Burkholderia thailandensis E264] gi|83654611|gb|ABC38674.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia thailandensis E264] Length = 338 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA + G E GL + E +++AH+ +LN++ A V Y + Sbjct: 169 TGDIAFVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 220 >gi|269114995|ref|YP_003302758.1| tRNA/rRNA methyltransferase [Mycoplasma hominis] gi|268322620|emb|CAX37355.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114] Length = 176 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 52/153 (33%), Gaps = 6/153 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + ++L N I+R+ A + I + + A+G + Sbjct: 1 MINIILYQPEISPNTSNIIRTCFAGNAKLHIIKPIAFDLHPHWMKRKAAGHFLTEIQHEV 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-----NDKIALILGAEGKGLRPKTQE- 246 + K + K ++ + K N ++ ++ G E G+ + + Sbjct: 61 HENYEEFFKKYGDKNIYYVTRYGLKNYVDVDYKQELQTNGELWIMFGTESTGIPKRIMQT 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M ++LN++N+ A+ L+ Sbjct: 121 NIPNCLRIPMFDECRSLNLANSVAIVLFEVLRQ 153 >gi|330805649|ref|XP_003290792.1| hypothetical protein DICPUDRAFT_81506 [Dictyostelium purpureum] gi|325079070|gb|EGC32689.1| hypothetical protein DICPUDRAFT_81506 [Dictyostelium purpureum] Length = 591 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L+ G+E KG+ K + +T + G+I++LNV+ +A+V L Sbjct: 489 KPMILVFGSESKGIGKKIMKASTRCLTIPGTGLIESLNVAQSASVILAECWR 540 >gi|163754906|ref|ZP_02162027.1| RNA methylase, SpoU family protein [Kordia algicida OT-1] gi|161324973|gb|EDP96301.1| RNA methylase, SpoU family protein [Kordia algicida OT-1] Length = 171 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 3/161 (1%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 T R + +V D V++ NIG++ R AF + II P + K++ Sbjct: 6 HYTTNFEKRIFPITLVSDQVSNAPNIGSLFRICDAFGVEKIIFCGDNIPVFGRRMTKTSR 65 Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQT---IGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + +P+ +++ + K+ G+ + K +KIAL++G E Sbjct: 66 ATEKVVPFEITTDIHAVVSKLKDHGYTIISLEITENSQSIHTIDFSKYEKIALVIGDENF 125 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 G+ P+T + + H+ M G ++NV A + LY Sbjct: 126 GVNPETIYESDVVMHIDMFGQNSSMNVVQATNIVLYEITRQ 166 >gi|159185217|ref|NP_355393.2| RNA methylase [Agrobacterium tumefaciens str. C58] gi|159140480|gb|AAK88178.2| RNA methylase [Agrobacterium tumefaciens str. C58] Length = 232 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 8/225 (3%) Query: 59 AALNNPS-RKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 AA +L +N L+ + P PV +D IVG +H+G+ Sbjct: 4 AAHKAGGTFAAESILILRNRLSGVADILADFPDDVPVYVAEAPVLDGIVGFH-LHRGILA 62 Query: 117 ETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 + L+ + S L++V +++ N+GA+ R+A AF D ++ + Sbjct: 63 LGRRVRDDGLEQMTAALPASSLVLVGCGISNHDNLGAMFRNAAAFYADAVLLDETCCDPL 122 Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + + G++ +PY R + L+++ GF GLS D K + +++++AL+ Sbjct: 123 YRKALRVSVGSVLSVPYHRGGGAVEMLERLSEEGFAIWGLSPDGKTEIRDIPRSERMALV 182 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +G EG+GL A + + +LN A+ +ALY Sbjct: 183 IGTEGEGLPQSVLSRF-QTARIAQSPQVDSLNAGTASGLALYQMA 226 >gi|302338807|ref|YP_003804013.1| RNA methyltransferase, TrmH family, group 1 [Spirochaeta smaragdinae DSM 11293] gi|301635992|gb|ADK81419.1| RNA methyltransferase, TrmH family, group 1 [Spirochaeta smaragdinae DSM 11293] Length = 235 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 20/53 (37%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +A + G E GLR + H+ +LN+S+A + Y Sbjct: 108 VAAVFGREADGLRDDELARCSVAVHIPSSPDFPSLNLSHAVQIICYELFRCRT 160 >gi|312900033|ref|ZP_07759350.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0470] gi|311292790|gb|EFQ71346.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0470] Length = 168 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + + ++ L ++ + Sbjct: 1 MTNHIVLFEPQIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L D L + + + + + G E GL +E Sbjct: 61 HKDLADFLAHVAGKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPETFMRENEEK 120 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LN+SN AA+ +Y Sbjct: 121 CIRIPMNDEHVRSLNLSNTAALIVYEALRQQN 152 >gi|203283978|ref|YP_002221718.1| spoU protein [Borrelia duttonii Ly] gi|203287521|ref|YP_002222536.1| spoU protein [Borrelia recurrentis A1] gi|201083421|gb|ACH93012.1| spoU protein [Borrelia duttonii Ly] gi|201084741|gb|ACH94315.1| spoU protein [Borrelia recurrentis A1] Length = 218 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 K+A+ G E GL + A + M G ++ N+S A A+ Y N Sbjct: 128 KMAVFFGTELTGLSHTILQNADLHLKIPMYGFTQSYNLSVAVAIVFYSLINRL 180 >gi|126441973|ref|YP_001059578.1| RNA methyltransferase [Burkholderia pseudomallei 668] gi|126221466|gb|ABN84972.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 668] Length = 303 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++A + +LN++ A V Y + Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAQIPANPAYSSLNLAQAVQVLAYELR 185 >gi|312130425|ref|YP_003997765.1| tRNA/rRNA methyltransferase (spou) [Leadbetterella byssophila DSM 17132] gi|311906971|gb|ADQ17412.1| tRNA/rRNA methyltransferase (SpoU) [Leadbetterella byssophila DSM 17132] Length = 171 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 27/56 (48%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + IK+ K ALILG E G+ + A + + G + NVS +A + L+ Sbjct: 108 QNFRPIKDQKYALILGNEVFGVNEELIAEADEVIEIPQFGTKHSFNVSVSAGMFLW 163 >gi|302380019|ref|ZP_07268498.1| RNA methyltransferase, TrmH family [Finegoldia magna ACS-171-V-Col3] gi|302312245|gb|EFK94247.1| RNA methyltransferase, TrmH family [Finegoldia magna ACS-171-V-Col3] Length = 234 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 83/219 (37%), Gaps = 10/219 (4%) Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 + N + + ++L +++ L T+ + I+KI K+ + Sbjct: 24 ELIENKADIVEEVLISEDFNDTEKLINILKEKKIPYTISSKQINKISLKDKEYVIGVFRK 83 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + ++LD +++ N+G I+RS +AF + + + Sbjct: 84 EKSNFQEKNH-------IILDGIDNMGNLGTIMRSMLAFGYKDLALISNTCDVYNPKAVR 136 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 ++ GA + + NL + +K L +S L ++ +L G EG Sbjct: 137 ASMGAFFKLNIQKFDNL-EDYKKNFPNNKIYSFLLDESSNELGDVKFDEPFSLAFGNEGA 195 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 GL + + ++ + +LN+ A ++A+Y ++ Sbjct: 196 GLPKEYYNE--NKIFINQSKDVDSLNLPIACSIAMYESK 232 >gi|226229043|ref|YP_002763149.1| RNA methyltransferase [Gemmatimonas aurantiaca T-27] gi|226092234|dbj|BAH40679.1| RNA methyltransferase [Gemmatimonas aurantiaca T-27] Length = 165 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 2/147 (1%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++++ + A + +I +S E V + Sbjct: 5 VVLVHPEIHWNTGNAGRTCLATGATLHLIEPLGFSLGEREVRRAGLDYWEHVDVRVWPDW 64 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAH 253 T Q + + D I LI G E GL + A M Sbjct: 65 DTFEAQLPTLGEPYFFSTKATQLFWDAPLGEPDHIVLIFGRETAGLPEPVRTRWAHRMVA 124 Query: 254 LHM-PGIIKALNVSNAAAVALYITQNH 279 + + +++LN+S + AVA+Y Sbjct: 125 MPITSPHVRSLNLSTSVAVAIYERLRQ 151 >gi|159486240|ref|XP_001701150.1| tRNA (guanosine)-2'-O-methyltransferase [Chlamydomonas reinhardtii] gi|158271953|gb|EDO97762.1| tRNA (guanosine)-2'-O-methyltransferase [Chlamydomonas reinhardtii] Length = 113 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + ++ L+LG E G+ + + M G+ ++LN + A+A++ + Sbjct: 50 WPSHGRVVLLLGNEQSGVPQPLLPLLDACVEIPMLGVTRSLNAHVSGAMAVWQYVQQRGR 109 >gi|119774427|ref|YP_927167.1| RNA methyltransferase [Shewanella amazonensis SB2B] gi|119766927|gb|ABL99497.1| RNA methyltransferase, TrmH family, group 1 [Shewanella amazonensis SB2B] Length = 240 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 22/52 (42%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A++ G E GL + + + +LN++ A + Y T+ Sbjct: 106 SGPVAIVFGRENHGLYNEELQACNYHVFIPANPEYMSLNLAQAVQIICYETR 157 >gi|282900733|ref|ZP_06308675.1| RNA methyltransferase TrmH, group 1 [Cylindrospermopsis raciborskii CS-505] gi|281194533|gb|EFA69488.1| RNA methyltransferase TrmH, group 1 [Cylindrospermopsis raciborskii CS-505] Length = 245 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 20/54 (37%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 LI G E +GL + A + + +LN++ A ++ Y Sbjct: 113 KPAGLIFGREDRGLTNQEINYAQKLVSIPTSPEYTSLNLATAVSICCYELSQSL 166 >gi|227502757|ref|ZP_03932806.1| SpoU family rRNA methyltransferase [Corynebacterium accolens ATCC 49725] gi|306835344|ref|ZP_07468367.1| TrmH family RNA methyltransferase [Corynebacterium accolens ATCC 49726] gi|227076487|gb|EEI14450.1| SpoU family rRNA methyltransferase [Corynebacterium accolens ATCC 49725] gi|304568777|gb|EFM44319.1| TrmH family RNA methyltransferase [Corynebacterium accolens ATCC 49726] Length = 156 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 4/152 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 SQL +V D+ P N G +R+A + + L ++ H Sbjct: 1 MSQLHIVFDNPVIPTNTGNAIRTAAVTGASLHLIEPLGFNFDDKHLKRAGLDY--HDLAD 58 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--A 248 + G + ++ + K D L+ G E GL + Sbjct: 59 VQIHKDFDACMEALPGARVFAFTTHTDKWFTDVEYQDGDVLLFGTEPTGLPDEHVNHPRI 118 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 T + M +++N+SN+A+ A++ Sbjct: 119 TDQVRIPMVPARRSMNLSNSASTAVFEAWRQL 150 >gi|300782756|ref|YP_003763047.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32] gi|299792270|gb|ADJ42645.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32] Length = 144 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 25/49 (51%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + +LG E G+ P+ + S+ + M G +LNV+ A ++ LY Sbjct: 90 RGRTIAVLGHEQTGIPPEVLDLLDSVVEIPMVGTGASLNVAVAGSLVLY 138 >gi|168333560|ref|ZP_02691825.1| tRNA/rRNA methyltransferase (SpoU) [Epulopiscium sp. 'N.t. morphotype B'] Length = 162 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 5/98 (5%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 A + + + ++ +K+ + ++ G E G+ + Sbjct: 50 YWDKLNIKRYCNFAEFLVQNDFPKIYMATTKAKQKYSDVLYEADAWIMFGKESGGIPEEI 109 Query: 245 QETATSM---AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I++LN++N+ AV LY Sbjct: 110 LR--DHKETAIRVPMLKDIRSLNLANSVAVILYEALRQ 145 >gi|259048232|ref|ZP_05738633.1| TrmH family group 2 RNA methyltransferase [Granulicatella adiacens ATCC 49175] gi|259035293|gb|EEW36548.1| TrmH family group 2 RNA methyltransferase [Granulicatella adiacens ATCC 49175] Length = 169 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 2/146 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + + ++ L ++ + ++ Sbjct: 6 IVLFEPQIPANTGNIARTCAATNSPLHLIEPLGFSTDDKHLKRAGLDYWHDVDITYHKSM 65 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 L + I ++ ++++ + G E GL + +E L Sbjct: 66 EAFLDYLGERPLYLITKFANHTYDEVDLARDEEQFFMFGKETTGLPEEFMRENEEKCLRL 125 Query: 255 HMPGI-IKALNVSNAAAVALYITQNH 279 M +++LN+SN AA+ +Y Sbjct: 126 PMNDTHVRSLNLSNTAAIVVYEALRQ 151 >gi|303327802|ref|ZP_07358242.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. 3_1_syn3] gi|302862163|gb|EFL85097.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. 3_1_syn3] Length = 239 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 56/139 (40%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R + L +VL +++DPHN+ AI RS AF + +P + SAS Sbjct: 62 HRQNDLTLVLANIHDPHNVSAIYRSCDAFGLSKVHLYYTNTPFPTLGRKTSASARKWVES 121 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ S++ +PL A+I+G E G+ + A Sbjct: 122 ERHKNSADLMRTLRGQGFQVLATSCSETARPLRDWDFIRPTAVIMGNEHSGVEEELLSLA 181 Query: 249 TSMAHLHMPGIIKALNVSN 267 ++ M G+I++ NVS Sbjct: 182 DGQLYIPMYGMIQSFNVSV 200 >gi|294786700|ref|ZP_06751954.1| RNA methyltransferase, TrmH family [Parascardovia denticolens F0305] gi|315226315|ref|ZP_07868103.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM 10105] gi|294485533|gb|EFG33167.1| RNA methyltransferase, TrmH family [Parascardovia denticolens F0305] gi|315120447|gb|EFT83579.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM 10105] Length = 247 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ L+ GAEG GL K A + ++ G +++LN AAAV+++ Sbjct: 189 YRFPERCVLLFGAEGPGLTRKALGIADDVVYITQYGSVRSLNAGAAAAVSMHAWMMQ 245 >gi|241764772|ref|ZP_04762781.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax delafieldii 2AN] gi|241365762|gb|EER60434.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax delafieldii 2AN] Length = 228 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 82/228 (35%), Gaps = 10/228 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ K ++ Q S + ++L G H SAAL R + + Sbjct: 11 SRDNAFVKDLRRLAQDSTAYRKQGRVWLEGDHLCSAALQRGVRPAIAVFSESFWPQAPAM 70 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 A V + I G E+ + + +R +VLD V D Sbjct: 71 YAQAAS--KVIVLADGLFADISGLESPAPMG----FVVDAAPSQGLRPGVATVVLDRVQD 124 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 N+G+ILRSA AF + K + + + ++ GA + AL+++ Sbjct: 125 AGNVGSILRSASAFGFRQVAALKGGAALWAPKVLRAGMGA----HFALDLVEGLALEELG 180 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + SS L + A +LG EG+G+ P + A+ Sbjct: 181 VLDVPLLVTSSHEGDLLHRASLPWPCAWVLGHEGQGVSPALEAQASRR 228 >gi|225867944|ref|YP_002743892.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. zooepidemicus] gi|225701220|emb|CAW98160.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. zooepidemicus] Length = 181 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 3/152 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++SQ +VL P N G I R+ A + I P + + ++ + + Sbjct: 13 KDSQNHVVLFQPQIPQNTGNIARTCAATNTPLHIIRPMGFPIDDRKMKRAGLDYWDKLDI 72 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248 +L + L + + + + + G E GL ++ A Sbjct: 73 RFYDHLDEFLAQCDGSLHVISKFADQVYSDKDYNDRQSH-YFLFGREDTGLPEPFMRQYA 131 Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LNVSNA + +Y Sbjct: 132 DRALRIPMNDEHVRSLNVSNAVCMIVYEALRQ 163 >gi|313665262|ref|YP_004047133.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma leachii PG50] gi|312949880|gb|ADR24476.1| putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma leachii PG50] Length = 181 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 1/153 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + +++ + + + II + + + SA+ Sbjct: 1 MNKRKINIVLYQPEIAQNVGAIMRTCVAINARLHIIEPLGFIFDDRHLSRSSANEYKYVD 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246 + + F + ND + L+ G E G+ E Sbjct: 61 CIRYDDWNDFITKHKNITLFCLSRYGQKPISDFDFSKINDNVYLVFGKESTGIAKPILKE 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + M ++LN++N +A Y Sbjct: 121 HYNTTFRIPMISETRSLNIANTVGIASYEVLRQ 153 >gi|195330985|ref|XP_002032183.1| GM26423 [Drosophila sechellia] gi|194121126|gb|EDW43169.1| GM26423 [Drosophila sechellia] Length = 618 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 22/64 (34%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 K L+LG E G+ + G++++LNV A ++ ++ Sbjct: 550 HSTNFVDFKFPKKSILLLGHEKHGIPANLIGFLDYAVEIPQYGLVRSLNVHVAGSLFIWE 609 Query: 276 TQNH 279 Sbjct: 610 YCKQ 613 >gi|169824492|ref|YP_001692103.1| rRNA methyltransferase [Finegoldia magna ATCC 29328] gi|302380508|ref|ZP_07268973.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna ACS-171-V-Col3] gi|303233775|ref|ZP_07320429.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna BVS033A4] gi|167831297|dbj|BAG08213.1| rRNA methyltransferase [Finegoldia magna ATCC 29328] gi|302311451|gb|EFK93467.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna ACS-171-V-Col3] gi|302495209|gb|EFL54961.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna BVS033A4] Length = 155 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 51/151 (33%), Gaps = 3/151 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I R+ V + + + +L +S + + + Sbjct: 1 MLNIVLLEPEKPSNTGNIGRTCVLTNTRLHLVRPFSFRLDDKLLKRSGMDYWDKVDLVIH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 ++ D + + + + + + D L+ G E G+ + Sbjct: 61 DDI-DEFLEYIKGNDRVFYVETFATHYYHEVEYKDGDYLVFGKESSGIDKDLVSKHKEHS 119 Query: 252 AHLHMPGIIK-ALNVSNAAAVALYITQNHFA 281 + M I +LN++N+ + L+ Sbjct: 120 IKIPMNMEIDRSLNLANSCNIVLFEALRQIN 150 >gi|134103609|ref|YP_001109270.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea NRRL 2338] gi|291004854|ref|ZP_06562827.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea NRRL 2338] gi|133916232|emb|CAM06345.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea NRRL 2338] Length = 215 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 4/145 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + +++ HNIG ++R+A AF+ + R + + + H P Sbjct: 62 RRHGFHVAIENFQHDHNIGTVVRTANAFAARAVHIVGRRRWNRRGAMVTDRYQHVHHHPD 121 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + S ++ ++ L+ G EG GLR +++E A Sbjct: 122 LESLRAYAREHSLAVVAVDNTQGSRPIER----TALPERCVLLFGQEGPGLRDESREGAD 177 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + + G +++N AA + ++ Sbjct: 178 LVVSIAQFGSTRSINAGVAAGIVMH 202 >gi|296138241|ref|YP_003645484.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM 20162] gi|296026375|gb|ADG77145.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM 20162] Length = 232 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 62/190 (32%), Gaps = 5/190 (2%) Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL-MVLDHVNDPHNIG 148 P+ P D + + + A + D + ++++ NIG Sbjct: 38 GVPLPVDPRYDPDLLAQGDRRNVVDAYRYWTREAIVADLDSRRHPFEVAIENLGHDANIG 97 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 ++R+A AF + R + + ++H P A + Sbjct: 98 TVVRTANAFGARTVHIVGRRRWNRRGAMVTDRYQHVQHHPDAESFAAWCAEHDLPIVAVD 157 Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 S ++ + L+ G EG G+ + A + + G +++NV A Sbjct: 158 NQPGSVPLERGS----LPRRCVLLFGQEGPGVSGDARRVAGTTVSIAQFGSTRSINVGVA 213 Query: 269 AAVALYITQN 278 A +A++ Sbjct: 214 AGIAMHAWVR 223 >gi|254282434|ref|ZP_04957402.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium NOR51-B] gi|219678637|gb|EED34986.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium NOR51-B] Length = 244 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 24/52 (46%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +++A++ G E +GL + + H+ +LN++ A + Y + Sbjct: 107 TERVAILFGREDRGLTNEELQRCNLHCHIPSHEDYSSLNLAMAVQIVAYELR 158 >gi|212710634|ref|ZP_03318762.1| hypothetical protein PROVALCAL_01700 [Providencia alcalifaciens DSM 30120] gi|212686715|gb|EEB46243.1| hypothetical protein PROVALCAL_01700 [Providencia alcalifaciens DSM 30120] Length = 243 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 27/70 (38%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + ++ K+ +A++ G E GL + + ++ +LN++ Sbjct: 88 WPMVEPRECGVKSVEQAKDAPVAIVFGRERVGLTNEELQRCNYHLYIPTNPEYGSLNLAM 147 Query: 268 AAAVALYITQ 277 A + Y + Sbjct: 148 AVQLVSYEIR 157 >gi|284029149|ref|YP_003379080.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836] gi|283808442|gb|ADB30281.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836] Length = 270 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 12/223 (5%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 +YG V ALN+P+ + +++ NA LD PV+ + + G Sbjct: 37 IYGRKPVLEALNDPALSVAKVVVADNAGGGSLDEILAAARRLGTPVERASSTRVKWLAGN 96 Query: 108 EAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 QG+ + L R + +LD V +P N+G ILR+A DG+ Sbjct: 97 GKQDQGVVADVDAPRMTPLPNFLRQRGRRPTKVFLLDGVTNPGNVGMILRTATGAGFDGV 156 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I + +P ++ K+++G P + A+ + + G++ GLS+ S++ L + Sbjct: 157 ILPRAGTPHVGPLVIKASAGVAFQAPIVNAPTAKGAVDALRAAGYEIYGLSARSQRSLFR 216 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + +LG E G+ T + + + +++LNV Sbjct: 217 TELAPRAVFVLGGETHGISVTT----DTDLRIPLHNGVESLNV 255 >gi|118595209|ref|ZP_01552556.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181] gi|118440987|gb|EAV47614.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181] Length = 154 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 43/151 (28%), Gaps = 4/151 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R V I + + ++ H Sbjct: 1 MFNIVLFEPEIPPNTGNIIRLCVNTKSSLHIIKPMGFTLDEKPVRRAGLDY--HDMANVK 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATS 250 + +++ S I G E +GL + + + Sbjct: 59 VYDNYEECYAQLKNHRHFAVTTKSDSHYHHFKYEAGDVFIFGPETRGLPLERLNDKRNQA 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M +++N+SN A+ ++ Sbjct: 119 NIRVPMVASNRSMNLSNTVAIVIFEAWRQIN 149 >gi|115372778|ref|ZP_01460084.1| CspR protein [Stigmatella aurantiaca DW4/3-1] gi|310823440|ref|YP_003955798.1| s-adenosyl-l-methionine dependent tRNA/rRNA family protein [Stigmatella aurantiaca DW4/3-1] gi|115370259|gb|EAU69188.1| CspR protein [Stigmatella aurantiaca DW4/3-1] gi|309396512|gb|ADO73971.1| S-adenosyl-L-methionine dependent tRNA/rRNA family protein [Stigmatella aurantiaca DW4/3-1] Length = 167 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 1/60 (1%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G+E GL + + + M ++LN+S + +A Y Sbjct: 94 YAARFEAGDHLVFGSEVTGLPAEVMAGGSGQSVTIPMLEERRSLNLSTSVGIATYEALRQ 153 >gi|39934266|ref|NP_946542.1| putative RNA methyltransferase [Rhodopseudomonas palustris CGA009] gi|192289793|ref|YP_001990398.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris TIE-1] gi|39648114|emb|CAE26634.1| putative RNA methyltransferase [Rhodopseudomonas palustris CGA009] gi|192283542|gb|ACE99922.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris TIE-1] Length = 151 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 57/144 (39%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + P N G ILR + + I P+ +S L+ + +R + Sbjct: 3 IALFQPDIPQNTGTILRFCACLNVEAHIIEPAGFPTSDRHFRRSGMDYLDQVSIVRHDSW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 Q + G + I L++ ++P ++ L+LG E G+ A + + Sbjct: 63 LKFEQWRKTAGCRLILLTTKGERPYFEQRYQPTDVLMLGRESAGVPDDVAAAADARVVIP 122 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 M +++LN++ AAAV Sbjct: 123 MQPGLRSLNIAMAAAVVTGEALRQ 146 >gi|294056522|ref|YP_003550180.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis DSM 45221] gi|293615855|gb|ADE56010.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis DSM 45221] Length = 150 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 40/150 (26%), Gaps = 3/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL + P N G I R + L +S + Sbjct: 1 MLHIVLFNPEIPQNTGNIGRLCAITESRLHLIHPLGFTITDKHLKRSGMDYWHSLDVHHH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 N H+ + + ++ L+ G EG G E Sbjct: 61 DNWDAFKASPHAPKRLWLFTTKA-DHSYWDVEYSNDDGLLFGNEGHGAPDWLHHELEGQR 119 Query: 252 AHLHMPGII-KALNVSNAAAVALYITQNHF 280 + ++LN+S + +A Y Sbjct: 120 LTIPHKNDSLRSLNLSTSVGIAAYEALRQL 149 >gi|29377148|ref|NP_816302.1| RNA methyltransferase [Enterococcus faecalis V583] gi|29344614|gb|AAO82372.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583] Length = 168 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 46/152 (30%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + + ++ L ++ + Sbjct: 1 MTNHIVLFEPQIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 + L + + + + + G E GL +E Sbjct: 61 HKDSAAFLAHVAGKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPETFMRENEEK 120 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LN+SN AA+ +Y Sbjct: 121 CIRIPMNDEHVRSLNLSNTAALIVYEALRQQN 152 >gi|300121517|emb|CBK22036.2| unnamed protein product [Blastocystis hominis] Length = 215 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYIT 276 A+++G EG G+ K ++ +LNV+ AA++ ++ Sbjct: 99 HPFRGNTAIMMGNEGSGMNEKQLGMCDHFVYIPQFSQGTASLNVNVAASIVMHHF 153 >gi|221115884|ref|XP_002157148.1| PREDICTED: similar to TAR RNA binding protein 1 [Hydra magnipapillata] Length = 937 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 I K LILG E G+ + + GII++LNV + A+ ++ Sbjct: 878 FIFPKKSVLILGNERTGIPVDLIQVLDECVEIPQVGIIRSLNVHISGAIMVWEYCKQ 934 >gi|45187604|ref|NP_983827.1| ADL269Wp [Ashbya gossypii ATCC 10895] gi|44982342|gb|AAS51651.1| ADL269Wp [Ashbya gossypii ATCC 10895] Length = 397 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 86/268 (32%), Gaps = 51/268 (19%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 +YG +++ AL + R+ F L L V++ ++ + Sbjct: 119 IYGRNSILLALQSNRREYFVRLLHSGNLDPQIAKLAGQLGIKVQSAQRHQLNMMTNNAVH 178 Query: 111 H-------------------------------QGLALETAPLLSPTLDAVRNSQLLMVLD 139 + Q TA + A + + + LD Sbjct: 179 NGLVLEAKPLYPQEINALGAVDHEAGTFELIDQWSNNGTAQKVPFLQSAKKRYPVGLYLD 238 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA---------------L 184 V DPHN+GAILRSA D + + R S SA ++K++SGA Sbjct: 239 EVVDPHNVGAILRSAYFLGADFVAVSHRNSAPLSAAVSKTSSGALEVLPIYSVDKPLQFF 298 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 E + + + + ++ + L++G EG G+R Sbjct: 299 ERSRDEHDWVFVASHLTQGPGISSHVKNRVLPIEDMADLAQSSPVMLVVGNEGTGIRSNL 358 Query: 245 QETATSMAHLHMPGI-----IKALNVSN 267 Q+ + + + +LNVS Sbjct: 359 QQRSDFFVQVPFGRADEPQLVDSLNVSV 386 >gi|330840305|ref|XP_003292158.1| hypothetical protein DICPUDRAFT_156844 [Dictyostelium purpureum] gi|325077613|gb|EGC31314.1| hypothetical protein DICPUDRAFT_156844 [Dictyostelium purpureum] Length = 310 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 30/54 (55%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 N+KIAL+ G E G+ + + A +L M G++++ NVS + A+ L + Sbjct: 207 NEKIALVFGNETVGVSEEMKSLADRRFYLPMIGMVQSFNVSVSVAMTLAYLKMQ 260 >gi|319948186|ref|ZP_08022346.1| putative tRNA/rRNA methyltransferase [Dietzia cinnamea P4] gi|319438170|gb|EFV93130.1| putative tRNA/rRNA methyltransferase [Dietzia cinnamea P4] Length = 133 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 22/51 (43%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A I G E G+ A + + G ++LN+ AA++ L+ + Sbjct: 78 PTAWIFGNEAHGVPADLAAAADLRVRIPIRGRAESLNIVTAASICLHTSSR 128 >gi|224000635|ref|XP_002289990.1| rRNA methyltransferase [Thalassiosira pseudonana CCMP1335] gi|220975198|gb|EED93527.1| rRNA methyltransferase [Thalassiosira pseudonana CCMP1335] Length = 302 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 4/143 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++V++ + HN AILR+A A + ++ A E + Sbjct: 5 LVIVVERCTNDHNYSAILRTAEALGVQHVYIIS----PKTINSTLVDEAATEWLTVHEFD 60 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + ++ + S + E K+A++ G E G + A + Sbjct: 61 DTKECIETLRSENREIWVTDLSQVASCLTEEGIQKVAIVFGTEAVGCTAEMLNAADLRVY 120 Query: 254 LHMPGIIKALNVSNAAAVALYIT 276 L + G +LN+S A A+ ++ Sbjct: 121 LPLRGFADSLNLSVATALVVHQM 143 >gi|124808939|ref|XP_001348447.1| rRNA (adenosine-2'-O-)-methyltransferase, putative [Plasmodium falciparum 3D7] gi|23497341|gb|AAN36886.1| rRNA (adenosine-2'-O-)-methyltransferase, putative [Plasmodium falciparum 3D7] Length = 2779 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 67/190 (35%), Gaps = 1/190 (0%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 ++ + + + K + L+ + + L+++ ++ N+ + Sbjct: 2588 IILENILEKNKNNYQKKFDPISNIIEIHNEFRKNYLNNKKKNDLIVIASLIDKLPNLAGL 2647 Query: 151 LRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 R+ F+ + I S + +I ++ SN+ + + K Sbjct: 2648 CRTCEIFNVKKLLIDNINIIKDYQFQKISSTANKWMNIKELKKSNIINYIIKKKKKYSII 2707 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + + + L + K LILG E +GL + GII++LNV +A Sbjct: 2708 GLEQTHNSQKLNHFVFPKKCILILGDEKEGLPSSILMFLHHCIEIPGQGIIRSLNVHVSA 2767 Query: 270 AVALYITQNH 279 A+ +Y Sbjct: 2768 AITIYEYFKQ 2777 >gi|254518073|ref|ZP_05130129.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA] gi|226911822|gb|EEH97023.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA] Length = 153 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 4/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ V + + + + ++ + Sbjct: 1 MNLNIVLYQPEIPQNTGNIARTCVLTNSTLHLIKPMGFKIDDKQVKRAGLDYWSELKLEM 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + ++K ++ + ++ G E G+ + + Sbjct: 61 HESYEEFMKKYGDKRIFLATTHG--GVHYDEVSFKEGDFIMFGRESSGVPEEVH-NSHEG 117 Query: 252 AHLHMPGI-IKALNVSNAAAVALYITQNHF 280 + M ++LN+SN A+ Y Sbjct: 118 IRVPMIKTSTRSLNLSNTVAIVAYEALRQI 147 >gi|94501916|ref|ZP_01308426.1| rRNA methylase [Oceanobacter sp. RED65] gi|94425969|gb|EAT10967.1| rRNA methylase [Oceanobacter sp. RED65] Length = 253 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 29/74 (39%) Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + K +E + K+AL+LG E GL H+ +L Sbjct: 89 HLPWPLMHPRKAAAKSMEVLPRGQKVALVLGRERTGLTNDELAMCQVHIHIPANPDYASL 148 Query: 264 NVSNAAAVALYITQ 277 NV+ AA V Y + Sbjct: 149 NVAAAAQVLCYEVR 162 >gi|307151216|ref|YP_003886600.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 7822] gi|306981444|gb|ADN13325.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 7822] Length = 256 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A+I G E +GL A + +LN++ A A+ Y + Sbjct: 113 AIIFGPEDRGLSNSELNYAQRFVCIPANPDYPSLNLAQAVAICAYELRQ 161 >gi|90021058|ref|YP_526885.1| RNA methyltransferase [Saccharophagus degradans 2-40] gi|89950658|gb|ABD80673.1| RNA methyltransferase TrmH, group 1 [Saccharophagus degradans 2-40] Length = 267 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + E ++A++ G E +GL + + H+ +LN++ Sbjct: 92 PWPLLTPRECGDKAWAEAGKGEVAIVFGREDRGLTNEELQKCHYHVHIPSNPDYSSLNIA 151 Query: 267 NAAAVALYITQ 277 A V Y + Sbjct: 152 AAIQVLCYEIR 162 >gi|42524391|ref|NP_969771.1| RNA methyltransferase [Bdellovibrio bacteriovorus HD100] gi|39576600|emb|CAE80764.1| RNA methyltransferase, TrmH family, group [Bdellovibrio bacteriovorus HD100] Length = 297 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 101/265 (38%), Gaps = 10/265 (3%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL-----FLYGVH 55 M + + S + S + + + + H + + + G H Sbjct: 1 MKKNNSRPSGRNNSQRPQQGGRPQHGRPQGAGRPQGGRPQAHAPRENQIPRDWRVVIGTH 60 Query: 56 TVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 ++ L +++ + R + L + V+ ++K + Sbjct: 61 AINEVLKVRPKQVKGFWLRQGFENSGDLRDMNELALKNHIKVELKAEAALEKFGPSQQGA 120 Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 +L+ + S +++LD + DPHN+GAILR++ G++ + + Sbjct: 121 AIFVDGAPEFDMASLEGLDKSM-VLILDGIEDPHNLGAILRTSWLVGAQGVLIPEDRAVG 179 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 + + K A G +EH+P +N + +++ G+ GLS K+ + + DK+ Sbjct: 180 LTPTVHKVACGGVEHVPVEETTNFANYAEELKKQGYWIYGLSPRGKRSIFELELPDKVVW 239 Query: 232 ILGAEGKGLRPKTQETATSMAHLHM 256 +G+E KG+R T+ + + Sbjct: 240 AIGSEDKGMRVTTERLCDELVFIPQ 264 >gi|114799577|ref|YP_759058.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444] gi|114739751|gb|ABI77876.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC 15444] Length = 269 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 72/245 (29%), Gaps = 5/245 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N + S ++ + G T+ L ++ L + LA L Sbjct: 11 NDPRVEAYVSIRERDLTGGHGGRFIVEGKVTLETLLARSRFEVESLFLCETRLAPLAGIL 70 Query: 86 -NLPHPFPVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 +P PV +D + G V A L S L++ + Sbjct: 71 SEVPEGVPVYVAAQGVMDAVAGFPMHRGVLACGRKGAALSPQNVLPKDGPSTALILSELS 130 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 N + +A + ++ P + S+ AL + Sbjct: 131 NHDNVGACFRNAAAFGADAVLLDAASCDPLYRKAIRVSSGAALWLPFSQGGTGADLIAAA 190 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + PL +++AL++GAEG GL + A + M Sbjct: 191 EAAGHEVWALTPRSDAAPLPSLKVPERVALLMGAEGPGLPAEMIARA-RPVRIAMTEGFD 249 Query: 262 ALNVS 266 ++NV+ Sbjct: 250 SVNVA 254 >gi|154706594|ref|YP_001424590.1| rRNA methylase, SpoU family [Coxiella burnetii Dugway 5J108-111] gi|154355880|gb|ABS77342.1| rRNA methylase, SpoU family [Coxiella burnetii Dugway 5J108-111] Length = 240 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 23/69 (33%) Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268 L + + + IA++ G E GL + + +LN++ A Sbjct: 87 PWLLKTARECAEQSVQHQGNIAIVFGRERSGLTNEELAQCQYHVTIPTEAAFSSLNLAQA 146 Query: 269 AAVALYITQ 277 + Y + Sbjct: 147 VQILTYEMR 155 >gi|218437496|ref|YP_002375825.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 7424] gi|218170224|gb|ACK68957.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 7424] Length = 253 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K ALI G E +GL + A + +LN++ A AV +Y Sbjct: 111 KGALIFGPEDRGLSNEELNYAQRFVCIPANPDYPSLNLAQAVAVCVYELYQ 161 >gi|195502550|ref|XP_002098273.1| GE10291 [Drosophila yakuba] gi|194184374|gb|EDW97985.1| GE10291 [Drosophila yakuba] Length = 1138 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 22/64 (34%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 K L+LG E G+ + G++++LNV A ++ ++ Sbjct: 1070 HSTNFVDFKFPKKSILLLGHEKHGIPANLIGFLDYAVEIPQYGLVRSLNVHVAGSLFIWE 1129 Query: 276 TQNH 279 Sbjct: 1130 YCKQ 1133 >gi|258654720|ref|YP_003203876.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM 44233] gi|258557945|gb|ACV80887.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM 44233] Length = 172 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 1/147 (0%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L+ N+G +LR+ A + + P A + H Sbjct: 21 HSCWDHLIAAPLWPKYGVNLGTLLRTCDAVGACLAVPRLPWVPEALAQGNTLRRPSCVHW 80 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + D + S + + ++LG E G+ P+ + Sbjct: 81 VGRDVGAWLDGHRATGSMVVAVELTDESVRLADLPV-ARQRTVMLLGHEQSGVPPEGLDR 139 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 A + M G +LNV+ A ++ LY Sbjct: 140 ADLAVEIPMVGTGHSLNVAVAGSLVLY 166 >gi|70936152|ref|XP_739062.1| RNA methyltransferase [Plasmodium chabaudi chabaudi] gi|56515769|emb|CAH86833.1| RNA methyltransferase, putative [Plasmodium chabaudi chabaudi] Length = 224 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 2/179 (1%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 +D + + + + + L+ LD + +N+G IL A + + D Sbjct: 45 LDSLKFMKDKNYDSVAIVKMPNIENTKTEKKIKFLLALDRIRYAYNLGKILNIAYSMNID 104 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKP 219 I + + SG IPY S + + + + Sbjct: 105 FIFYIHNTVDPYNHQVMDITSGKHLFIPYSVGSYNELNQFCEQNNLVPIVAHTNGMTPQS 164 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + I N + LILG E G A L M + +LNVS AA + ++ +N Sbjct: 165 ILKNITNQGVCLILGNESTGPHKDIFSFA-KPVCLPMHEMTNSLNVSVAAGILIHYLKN 222 >gi|312601120|gb|ADQ90375.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168] Length = 202 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 78/203 (38%), Gaps = 7/203 (3%) Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 + + + V V + ++K+ ++ + +A+ + D + + +L++ L+ Sbjct: 7 KNNVEKYQKVNVDVVIVSQKILEKLSQHKSPSEVIAVCKSKKQRKIKDFLDSKRLVI-LE 65 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 ++ +P N+G I+R+ +F D + + ++ +K A Y + Sbjct: 66 NIQNPGNLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAI--FMANIYFLKNISDFFK 123 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 + + I +I G EGKG+ K + A ++ + Sbjct: 124 FGPKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPI--N 181 Query: 260 IKALNVSNAAAVALYITQNHFAK 282 ++LN+++A A+ + K Sbjct: 182 FESLNIASANAIFCHFF--QLKK 202 >gi|227519599|ref|ZP_03949648.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX0104] gi|227554157|ref|ZP_03984204.1| SpoU family RNA methyltransferase [Enterococcus faecalis HH22] gi|229544948|ref|ZP_04433673.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX1322] gi|229549215|ref|ZP_04437940.1| SpoU family RNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|255971931|ref|ZP_05422517.1| RNA methyltransferase TrmH [Enterococcus faecalis T1] gi|256616829|ref|ZP_05473675.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200] gi|256763295|ref|ZP_05503875.1| RNA methyltransferase TrmH [Enterococcus faecalis T3] gi|256853968|ref|ZP_05559333.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256957897|ref|ZP_05562068.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5] gi|256961082|ref|ZP_05565253.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96] gi|256963776|ref|ZP_05567947.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704] gi|257079834|ref|ZP_05574195.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1] gi|257081820|ref|ZP_05576181.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol] gi|257084362|ref|ZP_05578723.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1] gi|257087639|ref|ZP_05582000.1| RNA methyltransferase TrmH [Enterococcus faecalis D6] gi|257416846|ref|ZP_05593840.1| RNA methyltransferase TrmH [Enterococcus faecalis AR01/DG] gi|257420063|ref|ZP_05597057.1| RNA methyltransferase trmH [Enterococcus faecalis T11] gi|257421760|ref|ZP_05598750.1| RNA methyltransferase [Enterococcus faecalis X98] gi|293384028|ref|ZP_06629922.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis R712] gi|293386841|ref|ZP_06631411.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis S613] gi|294779486|ref|ZP_06744882.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis PC1.1] gi|300860577|ref|ZP_07106664.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TUSoD Ef11] gi|307270625|ref|ZP_07551916.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX4248] gi|307271723|ref|ZP_07552994.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0855] gi|307276907|ref|ZP_07558017.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX2134] gi|307287517|ref|ZP_07567560.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0109] gi|307290328|ref|ZP_07570243.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0411] gi|312908022|ref|ZP_07767005.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis DAPTO 512] gi|312953690|ref|ZP_07772527.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0102] gi|312978450|ref|ZP_07790188.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis DAPTO 516] gi|227072949|gb|EEI10912.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX0104] gi|227176699|gb|EEI57671.1| SpoU family RNA methyltransferase [Enterococcus faecalis HH22] gi|229305452|gb|EEN71448.1| SpoU family RNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|229309840|gb|EEN75827.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX1322] gi|255962949|gb|EET95425.1| RNA methyltransferase TrmH [Enterococcus faecalis T1] gi|256596356|gb|EEU15532.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200] gi|256684546|gb|EEU24241.1| RNA methyltransferase TrmH [Enterococcus faecalis T3] gi|256710911|gb|EEU25954.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256948393|gb|EEU65025.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5] gi|256951578|gb|EEU68210.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96] gi|256954272|gb|EEU70904.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704] gi|256987864|gb|EEU75166.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1] gi|256989850|gb|EEU77152.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol] gi|256992392|gb|EEU79694.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1] gi|256995669|gb|EEU82971.1| RNA methyltransferase TrmH [Enterococcus faecalis D6] gi|257158674|gb|EEU88634.1| RNA methyltransferase TrmH [Enterococcus faecalis ARO1/DG] gi|257161891|gb|EEU91851.1| RNA methyltransferase trmH [Enterococcus faecalis T11] gi|257163584|gb|EEU93544.1| RNA methyltransferase [Enterococcus faecalis X98] gi|291078508|gb|EFE15872.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis R712] gi|291083675|gb|EFE20638.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis S613] gi|294453443|gb|EFG21849.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis PC1.1] gi|300849616|gb|EFK77366.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TUSoD Ef11] gi|306498521|gb|EFM68023.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0411] gi|306501255|gb|EFM70558.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0109] gi|306506330|gb|EFM75490.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX2134] gi|306511601|gb|EFM80600.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0855] gi|306512935|gb|EFM81576.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX4248] gi|310626113|gb|EFQ09396.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis DAPTO 512] gi|310628528|gb|EFQ11811.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0102] gi|311288599|gb|EFQ67155.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis DAPTO 516] gi|315025562|gb|EFT37494.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX2137] gi|315030285|gb|EFT42217.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX4000] gi|315032790|gb|EFT44722.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0017] gi|315035173|gb|EFT47105.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0027] gi|315143811|gb|EFT87827.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX2141] gi|315148633|gb|EFT92649.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX4244] gi|315149956|gb|EFT93972.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0012] gi|315151957|gb|EFT95973.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0031] gi|315155539|gb|EFT99555.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0043] gi|315159161|gb|EFU03178.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0312] gi|315162160|gb|EFU06177.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0645] gi|315164915|gb|EFU08932.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX1302] gi|315168781|gb|EFU12798.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX1341] gi|315173728|gb|EFU17745.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX1346] gi|315573839|gb|EFU86030.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0309B] gi|315580410|gb|EFU92601.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0309A] gi|323481593|gb|ADX81032.1| SpoU rRNA Methylase family protein [Enterococcus faecalis 62] gi|327535888|gb|AEA94722.1| RNA methyltransferase [Enterococcus faecalis OG1RF] gi|329577392|gb|EGG58847.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX1467] Length = 168 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + + ++ L ++ + Sbjct: 1 MTNHIVLFEPQIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L L + + + + + G E GL +E Sbjct: 61 HKDLAAFLAHVAGKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPETFMRENEEK 120 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LN+SN AA+ +Y Sbjct: 121 CIRIPMNDEHVRSLNLSNTAALIVYEALRQQN 152 >gi|294660369|ref|NP_853100.2| SpoU class rRNA methylase [Mycoplasma gallisepticum str. R(low)] gi|284812027|gb|AAP56668.2| SpoU class rRNA methylase [Mycoplasma gallisepticum str. R(low)] gi|284930576|gb|ADC30515.1| SpoU class rRNA methylase [Mycoplasma gallisepticum str. R(high)] Length = 163 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 6/150 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL DP N G I RS V F+ + ++ +H+ + ++ Sbjct: 7 VVLYRPQDPRNAGNIARSCVGFNATLHLIHPFGFFITDERFKRAGLDYWDHLNLKQYADF 66 Query: 196 TDALQKMHSWGFQTIGLSSDSKK-----PLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT 249 D +++ + + E + +I L+ G E GL + + Sbjct: 67 DDFIKQNQIDENLFLFTKKANNYLSNIDFKEYLDHDQRIYLVFGQETNGLPDQLLNKYQD 126 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ + M I++ N++N+ ALY Sbjct: 127 NLVKIPMHNAIRSFNLANSVICALYELSRQ 156 >gi|224824740|ref|ZP_03697847.1| RNA methyltransferase, TrmH family, group 1 [Lutiella nitroferrum 2002] gi|224603233|gb|EEG09409.1| RNA methyltransferase, TrmH family, group 1 [Lutiella nitroferrum 2002] Length = 254 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 21/51 (41%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +AL+ G E GL E + + +LN++ A V Y +H Sbjct: 118 VALVFGNETFGLSIDEVEQCNRLVTIPGNPEYFSLNLAMAVQVMTYELFSH 168 >gi|255076753|ref|XP_002502046.1| predicted protein [Micromonas sp. RCC299] gi|226517311|gb|ACO63304.1| predicted protein [Micromonas sp. RCC299] Length = 411 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA---LYIT 276 +K+A++ G E G + E+A + +L + G +LN+S AAA+ L+ Sbjct: 181 PEKLAIVFGTESVGCTREALESADARVYLPLRGFADSLNLSVAAALCIQTLFHL 234 >gi|167044726|gb|ABZ09396.1| putative SpoU rRNA methylase family protein [uncultured marine microorganism HF4000_APKG7N23] Length = 209 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 19/53 (35%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K ALI G E GL + LN+S+A + LY Sbjct: 82 REKPALIFGRENYGLYRGELALCEVTITIPTNPKFPILNLSHAVGIVLYEIYR 134 >gi|118376426|ref|XP_001021395.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila] gi|89303162|gb|EAS01150.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila SB210] Length = 252 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 1/56 (1%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALYITQ 277 ++G EG GL ++ ++ +LNVS AA++ + Sbjct: 128 HPFQGDTVFLMGNEGAGLIEAHKKICDHFVYIPQYTNKTASLNVSCAASIIFHHFA 183 >gi|92114963|ref|YP_574891.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens DSM 3043] gi|91798053|gb|ABE60192.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens DSM 3043] Length = 274 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 28/75 (37%) Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 H + + P E +N + AL+ G E G+ + + H+ + Sbjct: 101 HLPWPMLTPRALGERLPRECAPENARAALVFGREDSGMTNGELQRCHAHVHIPTNPDFSS 160 Query: 263 LNVSNAAAVALYITQ 277 LN++ A V Y + Sbjct: 161 LNLAAAVQVLAYECR 175 >gi|315655315|ref|ZP_07908215.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333] gi|315490255|gb|EFU79880.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333] Length = 154 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L ++ N GA +R A + + + K L++ + Sbjct: 1 MLHVIFFEPRIAGNTGAAIRLAACTGATLHVVEP--TVFDLDNDTKLKRAGLDYHDLAHL 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 D + + + L Q D L+ G E GL + + TS Sbjct: 59 ERHPDLDDCLAHVPGNIYAFTGHTDILLPQIQFQDGDGLMFGPEDTGLPVEVMDDPRVTS 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+S +AA+ LY Sbjct: 119 RVRIPMLDGRRSLNLSISAAIGLYYAWGQL 148 >gi|312796656|ref|YP_004029578.1| RRNA methylase, SpoU family [Burkholderia rhizoxinica HKI 454] gi|312168431|emb|CBW75434.1| RRNA methylase, SpoU family [Burkholderia rhizoxinica HKI 454] Length = 318 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 22/49 (44%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL E +AH+ +LN++ A V Y + Sbjct: 180 IALVFGNERTGLSNADVERCNVLAHIPANPAYSSLNLAQAVQVLAYELR 228 >gi|241123159|ref|XP_002403800.1| hypothetical protein IscW_ISCW002074 [Ixodes scapularis] gi|215493536|gb|EEC03177.1| hypothetical protein IscW_ISCW002074 [Ixodes scapularis] Length = 316 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K L+LG E +GL + + + G+I++LNV + A ++ Sbjct: 255 HDYRFPKKTLLLLGNEKEGLPVELIQLLDVCVEIPQRGVIRSLNVHVSGASWIWEYAKQ 313 >gi|116051842|ref|YP_789315.1| putative methyltransferase [Pseudomonas aeruginosa UCBPP-PA14] gi|218889899|ref|YP_002438763.1| putative methyltransferase [Pseudomonas aeruginosa LESB58] gi|254242508|ref|ZP_04935830.1| hypothetical protein PA2G_03259 [Pseudomonas aeruginosa 2192] gi|296387667|ref|ZP_06877142.1| RNA methyltransferase [Pseudomonas aeruginosa PAb1] gi|313109235|ref|ZP_07795203.1| putative methyltransferase [Pseudomonas aeruginosa 39016] gi|115587063|gb|ABJ13078.1| putative rRNA methylase [Pseudomonas aeruginosa UCBPP-PA14] gi|126195886|gb|EAZ59949.1| hypothetical protein PA2G_03259 [Pseudomonas aeruginosa 2192] gi|218770122|emb|CAW25884.1| probable methyltransferase [Pseudomonas aeruginosa LESB58] gi|310881705|gb|EFQ40299.1| putative methyltransferase [Pseudomonas aeruginosa 39016] Length = 257 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 28/72 (38%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + + LE N ++AL+ G E GL + + H+ +LN+ Sbjct: 87 PWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNL 146 Query: 266 SNAAAVALYITQ 277 + A V Y + Sbjct: 147 AAAVQVLTYEVR 158 >gi|15599012|ref|NP_252506.1| methyltransferase [Pseudomonas aeruginosa PAO1] gi|254236721|ref|ZP_04930044.1| hypothetical protein PACG_02731 [Pseudomonas aeruginosa C3719] gi|9949991|gb|AAG07204.1|AE004799_10 probable methyltransferase [Pseudomonas aeruginosa PAO1] gi|126168652|gb|EAZ54163.1| hypothetical protein PACG_02731 [Pseudomonas aeruginosa C3719] Length = 257 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 28/72 (38%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + + LE N ++AL+ G E GL + + H+ +LN+ Sbjct: 87 PWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNL 146 Query: 266 SNAAAVALYITQ 277 + A V Y + Sbjct: 147 AAAVQVLTYEVR 158 >gi|107103337|ref|ZP_01367255.1| hypothetical protein PaerPA_01004406 [Pseudomonas aeruginosa PACS2] Length = 251 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 28/72 (38%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + + LE N ++AL+ G E GL + + H+ +LN+ Sbjct: 81 PWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNL 140 Query: 266 SNAAAVALYITQ 277 + A V Y + Sbjct: 141 AAAVQVLTYEVR 152 >gi|254496594|ref|ZP_05109462.1| RNA methyltransferase [Legionella drancourtii LLAP12] gi|254354218|gb|EET12885.1| RNA methyltransferase [Legionella drancourtii LLAP12] Length = 251 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA++ G E GL + H+ +LN++ A + Y + Sbjct: 110 IAIVFGREHAGLTNEELLKCHYHIHIPSNPEYSSLNLAQAVQIVAYELR 158 >gi|332030022|gb|EGI69847.1| RNA methyltransferase-like protein 1 [Acromyrmex echinatior] Length = 438 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 4/56 (7%) Query: 229 IALILGAEGKGLR----PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + L++G E +G+ + + ++ + I +LNV A + + + F Sbjct: 375 VVLVIGGETEGISLESCKLLRSRNCTRVNIPLTNGIDSLNVGVAVGIVTFEMKRQF 430 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 77/227 (33%), Gaps = 8/227 (3%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 S Y L + + + + + + + L G + A+ + Sbjct: 93 STTKPKYIALDADDKLISSLMIDIKTKKKREKNRQMLLEGFRLIEDAIQAGIVAKVIFFS 152 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133 + + L LP + +P +TI + + P + A Sbjct: 153 RLSDVLPLS----LPKEVKLYKIPYRTIQLWSNLITSPGIIGIFEIPDVDTKEPAENAIP 208 Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L ++ D++ +P N+G I+R+A A C+ ++ K + +SA GA +P Sbjct: 209 LTIICDNIREPGNLGTIVRAAAAVGCEKLLLMKGCVDLWEPKVLRSAIGAHFRLPIFTSI 268 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 + + + + ++ + + + + K + EG + Sbjct: 269 SWDEIPTLISDESAIFLADNNIAYENVLTDFKMNPDI----NEGSSI 311 >gi|322373881|ref|ZP_08048416.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150] gi|321277253|gb|EFX54323.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150] Length = 184 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 2/146 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + NL Sbjct: 21 IVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDNL 80 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 D + K + +D E + G E GL + +E A + Sbjct: 81 ADFMSKNQQGRLHLVTKFADKTYSDEVYDDGKDHYFMFGREDTGLPEEFMREHAEKAIRI 140 Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279 M +++LNVSN + +Y Sbjct: 141 PMNDEHVRSLNVSNTVCMIVYEALRQ 166 >gi|253988841|ref|YP_003040197.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780291|emb|CAQ83452.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Photorhabdus asymbiotica] Length = 259 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 27/70 (38%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + Q ++ +A++ G E GL + + ++ +LN++ Sbjct: 106 WPMVEPRECGERSVQAAEHVPVAIVFGRERVGLTNEELQKCHFHLNIPTNPEYSSLNLAM 165 Query: 268 AAAVALYITQ 277 A + Y + Sbjct: 166 AVQLVSYEIR 175 >gi|115439859|ref|NP_001044209.1| Os01g0742000 [Oryza sativa Japonica Group] gi|113533740|dbj|BAF06123.1| Os01g0742000 [Oryza sativa Japonica Group] Length = 163 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 30/81 (37%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMP----------------------GI----- 259 + L+LG+EG GLRP + + T + + G Sbjct: 67 EPTILVLGSEGTGLRPLVERSCTHLVRIPGNVDGSFVGADTDTDGGEEGDNYSGNQDMKS 126 Query: 260 ---IKALNVSNAAAVALYITQ 277 +++LNVS AA V LY Sbjct: 127 FLAVESLNVSVAAGVLLYHLA 147 >gi|226946081|ref|YP_002801154.1| RNA methyltransferase TrmH, group 1 [Azotobacter vinelandii DJ] gi|226721008|gb|ACO80179.1| RNA methyltransferase TrmH, group 1 [Azotobacter vinelandii DJ] Length = 258 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V +Y + Sbjct: 111 VALVFGREYAGLTNEELQRCQFHVHIPSDPSFSSLNLAAAVQVLVYEVR 159 >gi|3046324|gb|AAC24483.1| unknown [Azotobacter vinelandii] Length = 257 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V +Y + Sbjct: 110 VALVFGREYAGLTNEELQRCQFHVHIPSDPSFSSLNLAAAVQVLVYEVR 158 >gi|329905921|ref|ZP_08274299.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium IMCC9480] gi|327547412|gb|EGF32238.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 251 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++AL+LG E GL + E + ++ +LN+ A V Y + Sbjct: 119 RVALVLGNERFGLPNEIVEKCNVLINIPANPAYSSLNLGQAVQVLAYECR 168 >gi|302831964|ref|XP_002947547.1| hypothetical protein VOLCADRAFT_103485 [Volvox carteri f. nagariensis] gi|300267411|gb|EFJ51595.1| hypothetical protein VOLCADRAFT_103485 [Volvox carteri f. nagariensis] Length = 620 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 54/303 (17%), Positives = 92/303 (30%), Gaps = 71/303 (23%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA---------LARLDWDANLPHPFPV 93 + LYGV V AAL RK+ + + L R V Sbjct: 237 RDTLQGEALYGVFPVLAALRAKRRKVHRAFILSSMDLSKRKDAGLVRQVEALCSEAGVEV 296 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLS----------PTLDAVRNSQLLMVLDHVND 143 ++ + E P + + LD V D Sbjct: 297 VRTGRHELNLMSYDRPHQLAEMDEFPPADEVIAAAAGAVHGGAAGTAAPPVWLALDEVVD 356 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRISNLTDALQK 201 P N+GA++RSA G++ R SAV++K+++GALE + R T + Sbjct: 357 PQNLGAVVRSAYCLGAGGVLACARNCAPLSAVVSKASAGALEALQVHSCRNLPRTLMDAR 416 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM----- 256 + + + + + + L+LG+EG GLR + + + + M Sbjct: 417 DRKGWTVLGAAAGSGSEAVGRVVVDRPTILVLGSEGFGLRTNVRRACSGLVRVDMAPPTT 476 Query: 257 ---------------------------------------------PGIIKALNVSNAAAV 271 G++ +LNVS A + Sbjct: 477 ARAGRGISIPSSADDADAAVATNLRQPLPPSPPLPRQQQPQHAVLRGLVDSLNVSVATGI 536 Query: 272 ALY 274 L+ Sbjct: 537 LLH 539 >gi|291438474|ref|ZP_06577864.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291341369|gb|EFE68325.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 252 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 70/238 (29%), Gaps = 10/238 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQL----LATKNALARLDWDANLPHPFPVKTVP 97 H + L G H + A+ + + + A L D + VP Sbjct: 12 HRQSGTAVLLDGFHALKHAVRFRAEVLVAVTADRAAALALADELAPDVRDTLAALLTEVP 71 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 T +V + AL P + L+ + + + ++ P N+G Sbjct: 72 HATYASLVPRTHPTAVAALAVRPSRAGHLERLARTPRTAPVVVLDHPRNLGNAGAVIRLA 131 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + G + GA H + Sbjct: 132 AGFGATGVVTTGTLDPWHPTVVRGGAGLHFATAVER------LTAGELPPGPVFALDPEG 185 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + D L G+E GL P+ + A + L M ++ + N++ + A+ LY Sbjct: 186 EDIRGTKLPDDALLAFGSERSGLSPELRARADHLIALPMRSMVSSYNLATSVAMTLYH 243 >gi|294813801|ref|ZP_06772444.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064] gi|294326400|gb|EFG08043.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064] Length = 267 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 84/236 (35%), Gaps = 20/236 (8%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP------VKTVPPQTID 102 + L G H + AL + + T + A L L + V P+T+ Sbjct: 26 VLLDGFHALKHALR--FQADIRCAITSDRAAVLALADALAPDVRERIAELLTEVAPETLR 83 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +++ + + AL P LD A +++LD+ + N+GA++R A F Sbjct: 84 ELLPRVHPTRVAALAVRPGRRDRLDLLSARPRHAPVVLLDNPRNLGNVGAVVRLAAGFGA 143 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+ITT P + A + + Sbjct: 144 TGVITTGDLDPWHPNAVRAGAGLHYATAVAR---------LDPDDLPGGPLLVLDPEGDD 194 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + D L+ G+E G+ P+ + AT + L M + + N++ + A+ L+ Sbjct: 195 IRTVALPDDALLVFGSERHGVSPELRARATRLLSLPMRPQVSSYNLATSVAMTLFH 250 >gi|239930134|ref|ZP_04687087.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 249 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 70/238 (29%), Gaps = 10/238 (4%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQL----LATKNALARLDWDANLPHPFPVKTVP 97 H + L G H + A+ + + + A L D + VP Sbjct: 9 HRQSGTAVLLDGFHALKHAVRFRAEVLVAVTADRAAALALADELAPDVRDTLAALLTEVP 68 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 T +V + AL P + L+ + + + ++ P N+G Sbjct: 69 HATYASLVPRTHPTAVAALAVRPSRAGHLERLARTPRTAPVVVLDHPRNLGNAGAVIRLA 128 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 + G + GA H + Sbjct: 129 AGFGATGVVTTGTLDPWHPTVVRGGAGLHFATAVER------LTAGELPPGPVFALDPEG 182 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + D L G+E GL P+ + A + L M ++ + N++ + A+ LY Sbjct: 183 EDIRGTKLPDDALLAFGSERSGLSPELRARADHLIALPMRSMVSSYNLATSVAMTLYH 240 >gi|163791249|ref|ZP_02185664.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7] gi|159873453|gb|EDP67542.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7] Length = 132 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 20/102 (19%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M LI K+E++ + K H + + + G H + A Sbjct: 1 MELILSTKNERVKNWKKLH-------------------SKKGRQKAGTYLIEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 L N + I +++ ++ + + T + + Sbjct: 42 LKNHAD-ILEMMISEEIAFEDIPQFDEEKQVEISTEIAKVLS 82 >gi|254392368|ref|ZP_05007551.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|197706038|gb|EDY51850.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 268 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 84/236 (35%), Gaps = 20/236 (8%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP------VKTVPPQTID 102 + L G H + AL + + T + A L L + V P+T+ Sbjct: 27 VLLDGFHALKHALR--FQADIRCAITSDRAAVLALADALAPDVRERIAELLTEVAPETLR 84 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +++ + + AL P LD A +++LD+ + N+GA++R A F Sbjct: 85 ELLPRVHPTRVAALAVRPGRRDRLDLLSARPRHAPVVLLDNPRNLGNVGAVVRLAAGFGA 144 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+ITT P + A + + Sbjct: 145 TGVITTGDLDPWHPNAVRAGAGLHYATAVAR---------LDPDDLPGGPLLVLDPEGDD 195 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + D L+ G+E G+ P+ + AT + L M + + N++ + A+ L+ Sbjct: 196 IRTVALPDDALLVFGSERHGVSPELRARATRLLSLPMRPQVSSYNLATSVAMTLFH 251 >gi|195145142|ref|XP_002013555.1| GL24204 [Drosophila persimilis] gi|194102498|gb|EDW24541.1| GL24204 [Drosophila persimilis] Length = 883 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 21/64 (32%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 K L+LG E G+ + G++++LNV ++ ++ Sbjct: 817 HSVSFANFKFPKKCVLLLGHEKHGIPADLIGFLDYAVEIPQFGVVRSLNVHVTGSLFIWE 876 Query: 276 TQNH 279 Sbjct: 877 YCKQ 880 >gi|194911129|ref|XP_001982293.1| GG11125 [Drosophila erecta] gi|190656931|gb|EDV54163.1| GG11125 [Drosophila erecta] Length = 1138 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 22/64 (34%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 K L+LG E G+ + G++++LNV A ++ ++ Sbjct: 1070 HSTNFVDFKFPKKSILLLGHEKHGIPANLIGFLDYAVEIPQYGLVRSLNVHVAGSLFIWE 1129 Query: 276 TQNH 279 Sbjct: 1130 YCKQ 1133 >gi|167754822|ref|ZP_02426949.1| hypothetical protein CLORAM_00326 [Clostridium ramosum DSM 1402] gi|237735446|ref|ZP_04565927.1| tRNA/rRNA methyltransferase [Mollicutes bacterium D7] gi|167704872|gb|EDS19451.1| hypothetical protein CLORAM_00326 [Clostridium ramosum DSM 1402] gi|229381191|gb|EEO31282.1| tRNA/rRNA methyltransferase [Coprobacillus sp. D7] Length = 246 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 71/220 (32%), Gaps = 14/220 (6%) Query: 58 SAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 L N + ++ +N ++ + + + + I Sbjct: 22 IELLENKPELVMRVYLKSNSYQNKGVKIIENLCQQNKIELIESD----NTINKLAKKDNC 77 Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 A+ + L+ + L+ + D N+G I+R+ + F+ + + Sbjct: 78 FAIAIIKKYTMDLEDANHVVLV----NPGDMGNMGTIIRTMLGFNYTNLAIIRPGVDVFD 133 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + +++ GAL +I + ++ + L K + L N L+ Sbjct: 134 PRVIRASMGALFNINFEYFNSFDEYLTKYPEREVYPLMLKGAKNIHQITAANNKHS-LVF 192 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 G E GL + + I +LN+S A + L Sbjct: 193 GNESSGLPDDYLKYG-QSVFIPHSDKIDSLNLSMALGITL 231 >gi|68535279|ref|YP_249984.1| putative rRNA methylase [Corynebacterium jeikeium K411] gi|68262878|emb|CAI36366.1| putative rRNA methylase [Corynebacterium jeikeium K411] Length = 227 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 61/183 (33%), Gaps = 6/183 (3%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 P+ +D G R L + +++ + NIG ++R+A A Sbjct: 43 DPELLD--AGDTRNVVDAYRYWKQSAIIADIDTRRHALHIAIENFENDSNIGTVVRTANA 100 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F+ D + R + + L+H + A + + Sbjct: 101 FAVDTVHIVGRRRWNRRGAMVTDRYQHLQHHATVGEVLEFAAREGLVVVAVDNTPGCVPL 160 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + ++ L+ G EG G+ + Q+ A + G +++N AA +A++ Sbjct: 161 ET----AELPERCLLLFGQEGPGVTQEAQDAARMTVSIAQFGSTRSINAGVAAGIAMHAW 216 Query: 277 QNH 279 Sbjct: 217 IRQ 219 >gi|326442221|ref|ZP_08216955.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 264 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 84/236 (35%), Gaps = 20/236 (8%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP------VKTVPPQTID 102 + L G H + AL + + T + A L L + V P+T+ Sbjct: 23 VLLDGFHALKHALR--FQADIRCAITSDRAAVLALADALAPDVRERIAELLTEVAPETLR 80 Query: 103 KIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 +++ + + AL P LD A +++LD+ + N+GA++R A F Sbjct: 81 ELLPRVHPTRVAALAVRPGRRDRLDLLSARPRHAPVVLLDNPRNLGNVGAVVRLAAGFGA 140 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 G+ITT P + A + + Sbjct: 141 TGVITTGDLDPWHPNAVRAGAGLHYATAVAR---------LDPDDLPGGPLLVLDPEGDD 191 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + D L+ G+E G+ P+ + AT + L M + + N++ + A+ L+ Sbjct: 192 IRTVALPDDALLVFGSERHGVSPELRARATRLLSLPMRPQVSSYNLATSVAMTLFH 247 >gi|256371686|ref|YP_003109510.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM 10331] gi|256008270|gb|ACU53837.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM 10331] Length = 316 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 49/291 (16%), Positives = 94/291 (32%), Gaps = 43/291 (14%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 + D +L +RD K Q+ + + G V+ L LL Sbjct: 19 RIDDPDDDRLEP-YRDLKGGNGLRQRRGARD----VIVEGRVAVTTLLGTGLTVHSVLLD 73 Query: 74 TKN-ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDA 128 ALA D + P+ + I + VG A+H+G+ LD Sbjct: 74 DHQVALATEVVDRAVARRVPILVASRRVIAETVGF-ALHRGVVAHAERPPVQALEDFLDL 132 Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA----- 183 + +V + V D N+GA+ R+A AF ++ + + + ++G Sbjct: 133 WAPGETALVAEGVVDQENLGALGRNAAAFGACALVLDPTSADPRNRRSVRVSAGHLLTLP 192 Query: 184 ---------------------------LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 + IG + Sbjct: 193 LVRATPWPSALALLARSQVRIAALVPPASTQRLRTERTCDLTPVVTVDELAEAIGEPRHA 252 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + P E ++ ++AL++G+EG GL P A + + + + ++N++ Sbjct: 253 RAPGEHDLPRPRVALLVGSEGHGLSPSALAYADVLVTIPIANGVDSVNLAT 303 >gi|328869255|gb|EGG17633.1| hypothetical protein DFA_08629 [Dictyostelium fasciculatum] Length = 352 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + I ++ G E GL + + + L M G ++LN+S A + Y Sbjct: 279 HSPICVVFGNEIVGLSEEIIKECDFICDLPMKGQKRSLNISVAFGITSY 327 >gi|329118733|ref|ZP_08247433.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327465168|gb|EGF11453.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 154 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R D + P +SA + ++ H Sbjct: 1 MFTVVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDY--HEFARVS 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + + A G + L++ + +Q + G E +GL + + Sbjct: 59 VHESYAECLAALAGRRIFALTTKGRTRPDQVSFQAGDVFLFGPETRGLPAEILDGLPQER 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++N+SN AV ++ Sbjct: 119 KIRLPMKSGSRSMNLSNTVAVIVFEAWRQ 147 >gi|120402541|ref|YP_952370.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1] gi|119955359|gb|ABM12364.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii PYR-1] Length = 154 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E GL T T+ + + ++LN+SNAAAVA+Y Sbjct: 91 YRPGDVLMFGPEPTGLDAATLADPHITAQVRIPLLAGRRSLNLSNAAAVAVYEAWRQ 147 >gi|160871876|ref|ZP_02062008.1| RNA methyltransferase TrmH, group 1 [Rickettsiella grylli] gi|159120675|gb|EDP46013.1| RNA methyltransferase TrmH, group 1 [Rickettsiella grylli] Length = 239 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 KIA++ G E GL K + + +LN++ A + Y +N F Sbjct: 102 MNHCQQKIAILFGQERCGLTNKELQRCHFQMTIPANPEYNSLNLAAAVQIVCYELRNAF 160 >gi|52841974|ref|YP_095773.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629085|gb|AAU27826.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 257 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + ++ +LN++ A + Y + Sbjct: 110 VAIVFGREHAGLTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELR 158 >gi|228472059|ref|ZP_04056827.1| SpoU rRNA methylase family protein [Capnocytophaga gingivalis ATCC 33624] gi|228276671|gb|EEK15384.1| SpoU rRNA methylase family protein [Capnocytophaga gingivalis ATCC 33624] Length = 178 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 +++VLD++ +NIG++ R+A AF I + + K+A GA E + + Sbjct: 21 PKIPVIVVLDNIRSLNNIGSVFRTADAFCIQKIYLCGITATPPHKEIHKTALGATESVEW 80 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQE 246 + ++T ++ + + I + + K ALI G E +G++ Sbjct: 81 EYVQDITTLVESLRQRQVEVIAIEQVEDAVSLEHFSPKKGVTYALIFGNEVEGVQQSVVS 140 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274 + G +LN++ +A + L+ Sbjct: 141 LCQRAIEIPQYGTKHSLNIAVSAGILLW 168 >gi|303234407|ref|ZP_07321046.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4] gi|302494523|gb|EFL54290.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4] Length = 234 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 84/219 (38%), Gaps = 10/219 (4%) Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 + N + + ++L +++ L T+ + I+KI K+ + Sbjct: 24 ELIENKADIVEEVLISEDFNDTEKLINILKGKKIPYTISSKQINKISLKDKEYVIGVFRK 83 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + ++LD +++ N+G I+RS +AF + + + + Sbjct: 84 EKSNFQEKNH-------IILDGIDNMGNLGTIMRSMLAFGYKDLALISNTCDVYNPKVVR 136 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 ++ GA + + NL + +K L +S L ++ +L G EG Sbjct: 137 ASMGAFFKLNIQKFDNL-EDYKKNFPNNKIYSFLLDESSNELRDVKFDEPFSLAFGNEGA 195 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 GL + + ++ + +LN+ A ++A+Y ++ Sbjct: 196 GLPKEYYNE--NKIFINQSKDVDSLNLPIACSIAMYESK 232 >gi|290973947|ref|XP_002669708.1| spoU protein [Naegleria gruberi] gi|284083259|gb|EFC36964.1| spoU protein [Naegleria gruberi] Length = 307 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY---ITQNH 279 + IA++ G E G+ + A + + + G ++ NV + A+ Y + Sbjct: 187 NDYDKPIAVVFGNESHGISNSAIDHADASLTIPLYGFTESFNVHVSTALTTYYLNEKFRN 246 Query: 280 FAK 282 + K Sbjct: 247 YLK 249 >gi|306824229|ref|ZP_07457599.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|309801726|ref|ZP_07695846.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium JCVIHMP022] gi|304552432|gb|EFM40349.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|308221668|gb|EFO77960.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium JCVIHMP022] Length = 320 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+E + ++ GAEG GL K E A + ++ G ++++N AAAV+++ Sbjct: 254 PMETYHFPKRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMHAWIA 313 Query: 279 H 279 Sbjct: 314 Q 314 >gi|255974985|ref|ZP_05425571.1| RNA methyltransferase TrmH [Enterococcus faecalis T2] gi|257090801|ref|ZP_05585162.1| RNA methyltransferase trmH [Enterococcus faecalis CH188] gi|307285493|ref|ZP_07565632.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0860] gi|312902433|ref|ZP_07761639.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0635] gi|255967857|gb|EET98479.1| RNA methyltransferase TrmH [Enterococcus faecalis T2] gi|256999613|gb|EEU86133.1| RNA methyltransferase trmH [Enterococcus faecalis CH188] gi|306502717|gb|EFM71982.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0860] gi|310634103|gb|EFQ17386.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0635] gi|315170405|gb|EFU14422.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX1342] gi|315579156|gb|EFU91347.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0630] Length = 168 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 2/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + + ++ L ++ + Sbjct: 1 MTNHIVLFEPQIPANTGNIARTCAATNAPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L L + + + + + G E GL +E Sbjct: 61 HKDLAAFLAHVAGKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPETFMRENEEK 120 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LN+SN AA+ +Y Sbjct: 121 CIRIPMNDEHVRSLNLSNTAALIVYEALRQQN 152 >gi|171742048|ref|ZP_02917855.1| hypothetical protein BIFDEN_01152 [Bifidobacterium dentium ATCC 27678] gi|283456825|ref|YP_003361389.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1] gi|171277662|gb|EDT45323.1| hypothetical protein BIFDEN_01152 [Bifidobacterium dentium ATCC 27678] gi|283103459|gb|ADB10565.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1] Length = 320 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+E + ++ GAEG GL K E A + ++ G ++++N AAAV+++ Sbjct: 254 PMETYHFPKRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMHAWIA 313 Query: 279 H 279 Sbjct: 314 Q 314 >gi|119494568|ref|ZP_01624706.1| RNA methyltransferase TrmH, group 1 [Lyngbya sp. PCC 8106] gi|119452100|gb|EAW33310.1| RNA methyltransferase TrmH, group 1 [Lyngbya sp. PCC 8106] Length = 317 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 23/63 (36%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + ALI G E +GL + + A + ALN++ A AV Y Sbjct: 97 HPRHGLGWLLETPSALIFGPEDRGLSNEELKYAQRFVRIPSSSAYPALNLAQAVAVCCYE 156 Query: 276 TQN 278 Sbjct: 157 LSQ 159 >gi|119026478|ref|YP_910323.1| hypothetical protein BAD_1460 [Bifidobacterium adolescentis ATCC 15703] gi|118766062|dbj|BAF40241.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] Length = 304 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+E + ++ GAEG GL K E A + ++ G ++++N AAAV+++ Sbjct: 238 PMETYHFPKRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMHAWIA 297 Query: 279 H 279 Sbjct: 298 Q 298 >gi|92114283|ref|YP_574211.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens DSM 3043] gi|91797373|gb|ABE59512.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens DSM 3043] Length = 246 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 18/51 (35%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +AL+ G E GL T + LN++ A + Y + Sbjct: 109 PVALVFGRERFGLTNDEIRHCTHQVSIPANPEYGVLNLAQAVQILAYEVRR 159 >gi|319442020|ref|ZP_07991176.1| putative rRNA methylase [Corynebacterium variabile DSM 44702] Length = 220 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 6/186 (3%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + P +D G R L + +++ + NIG ++R+ Sbjct: 33 EEYDPDLLDD--GDRRNVVDAYRWWRTEAIIADIDTRRHALHIAIENFENDSNIGTVVRT 90 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 A AF+ D + R + + LEH P A + S Sbjct: 91 ANAFAVDTVHIVGRKRWNRRGAMVTDRYQHLEHHPDTGSVMAYAAAHDLTVVAVDNTPGS 150 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + ++ L+ G EG G+ + Q A+ + G +++N AA +A+ Sbjct: 151 VPLET----AELPERCLLLFGQEGPGVTAEAQAGASMTVSIAQFGSTRSINAGVAAGIAM 206 Query: 274 YITQNH 279 + Sbjct: 207 HAWIRQ 212 >gi|167644668|ref|YP_001682331.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31] gi|167347098|gb|ABZ69833.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31] Length = 156 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 50/144 (34%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L P N+GA +R + P L ++A I ++ Sbjct: 3 LALFQPGIPQNVGAAIRLGACLGVGLDVIEPCSFPLNDKSLKRAALDYGPLTHMILHASW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 L + + ++ + P + L+ G E +G P+ + A S + Sbjct: 63 AAFLAAPQRREGRLLLFTTKATTPFHKFDFQAGDTLLFGNESRGAPPEVHDAAFSRLMIP 122 Query: 256 MPGIIKALNVSNAAAVALYITQNH 279 + +++N++ AA+AL Sbjct: 123 LRPEARSMNLATTAAMALGEALRQ 146 >gi|46581141|ref|YP_011949.1| RNA methyltransferase [Desulfovibrio vulgaris str. Hildenborough] gi|120601619|ref|YP_966019.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4] gi|46450562|gb|AAS97209.1| RNA methyltransferase, TrmH family [Desulfovibrio vulgaris str. Hildenborough] gi|120561848|gb|ABM27592.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4] gi|311234817|gb|ADP87671.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris RCH1] Length = 254 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +++AL+LG E +GL E T + + +LNV+ A+ + LY Sbjct: 109 ERVALLLGPEDRGLNNDEIEHCTRLLTIPTAPEASSLNVAQASLIVLYE 157 >gi|33863403|ref|NP_894963.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313] gi|33640852|emb|CAE21307.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313] Length = 249 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 27/51 (52%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +AL+ G E +GL + + A + LH +LN+S+A A+ L+ Q Sbjct: 114 PVALVFGREDRGLTNEELQLAQRVLTLHSSHGYPSLNLSHAVAIVLHELQR 164 >gi|21355819|ref|NP_651031.1| CG18596 [Drosophila melanogaster] gi|17862774|gb|AAL39864.1| LP02352p [Drosophila melanogaster] gi|23176042|gb|AAF55981.2| CG18596 [Drosophila melanogaster] gi|220960120|gb|ACL92596.1| CG18596-PA [synthetic construct] Length = 1136 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 22/64 (34%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 K L+LG E G+ + G++++LNV A ++ ++ Sbjct: 1070 HSTNFVDFKFPKKSILLLGHEKHGIPANLIGFLDYAVEIPQYGLVRSLNVHVAGSLFIWE 1129 Query: 276 TQNH 279 Sbjct: 1130 YCKQ 1133 >gi|85861011|ref|YP_463213.1| rRNA methylase [Syntrophus aciditrophicus SB] gi|85724102|gb|ABC79045.1| rRNA methylase, spoU family [Syntrophus aciditrophicus SB] Length = 263 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 21/48 (43%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +AL+ G E GL ++ + ++LN+S+A + Y Sbjct: 126 VALLFGPEDTGLTNDDLRYCHTVVSIPTSERFRSLNLSHAVMILCYEI 173 >gi|51892745|ref|YP_075436.1| tRNA/rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863] gi|51856434|dbj|BAD40592.1| tRNA/rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863] Length = 257 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++A++ G E GL + + + ++LN++ AA V Y Sbjct: 112 TQRVAILFGPERDGLPNAALDLCHGVITIPTHPFNRSLNLAQAALVIAYELW 163 >gi|110799392|ref|YP_695961.1| RNA methyltransferase [Clostridium perfringens ATCC 13124] gi|168207654|ref|ZP_02633659.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens E str. JGS1987] gi|168211765|ref|ZP_02637390.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens B str. ATCC 3626] gi|168215129|ref|ZP_02640754.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens CPE str. F4969] gi|168218192|ref|ZP_02643817.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens NCTC 8239] gi|169343200|ref|ZP_02864215.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens C str. JGS1495] gi|110674039|gb|ABG83026.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens ATCC 13124] gi|169298658|gb|EDS80737.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens C str. JGS1495] gi|170661014|gb|EDT13697.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens E str. JGS1987] gi|170710281|gb|EDT22463.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens B str. ATCC 3626] gi|170713470|gb|EDT25652.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens CPE str. F4969] gi|182379790|gb|EDT77269.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens NCTC 8239] Length = 153 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ V + I + L ++ + Sbjct: 1 MNLNIVLYQPEIPQNTGNIARTCVLTNSKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEI 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + D ++K + + ++ + ++ G E G+ A Sbjct: 61 HESYEDFMKKYGDKKIYLSTTHA--EDHYDEVKYEEGAFIMFGRESAGVPEDVH-NAHHG 117 Query: 252 AHLHMPGII-KALNVSNAAAVALYITQNHF 280 + M ++LN+SN A+ Y Sbjct: 118 IKVPMINTTTRSLNLSNTVAIIAYEALRQI 147 >gi|78779450|ref|YP_397562.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str. MIT 9312] gi|78712949|gb|ABB50126.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str. MIT 9312] Length = 249 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-- 276 + K + +A+I G E +GL A ++ +LN+S+A ++ LY Sbjct: 106 WILSFEKINNLAIIFGREDRGLSNNELLLANKTFNIPTSKNNPSLNLSHAVSIVLYELNK 165 Query: 277 --QNHFAK 282 + +F K Sbjct: 166 SSKRNFNK 173 >gi|260578510|ref|ZP_05846422.1| TrmH family RNA methyltransferase [Corynebacterium jeikeium ATCC 43734] gi|258603349|gb|EEW16614.1| TrmH family RNA methyltransferase [Corynebacterium jeikeium ATCC 43734] Length = 227 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 61/183 (33%), Gaps = 6/183 (3%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 P+ +D G R L + +++ + NIG ++R+A A Sbjct: 43 DPELLD--AGDRRNVVDAYRYWKQSAIIADIDTRRHALHIAIENFENDSNIGTVVRTANA 100 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F+ D + R + + L+H + A + + Sbjct: 101 FAVDTVHIVGRRRWNRRGAMVTDRYQHLQHHATVGEVLEFAAREGLVVVAVDNTPGCVPL 160 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + ++ L+ G EG G+ + Q+ A + G +++N AA +A++ Sbjct: 161 ET----AELPERCLLLFGQEGPGVTQEAQDAARMTVSIAQFGSTRSINAGVAAGIAMHAW 216 Query: 277 QNH 279 Sbjct: 217 IRQ 219 >gi|224543716|ref|ZP_03684255.1| hypothetical protein CATMIT_02929 [Catenibacterium mitsuokai DSM 15897] gi|224523369|gb|EEF92474.1| hypothetical protein CATMIT_02929 [Catenibacterium mitsuokai DSM 15897] Length = 243 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 71/230 (30%), Gaps = 15/230 (6%) Query: 53 GVHTVSAALNNPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 GV L + + +++ +N + H P+ I Sbjct: 15 GVFPTIELLEHKPDIVKRVVVHSSIEENRGYPKIKELCALHHIPIDVHD----ATINKLS 70 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 A+ L + L+ + D N+G I+R+ + F + + Sbjct: 71 PKSNCYAIGVFKTFYEPLQKGNHIVLV----NPMDMGNMGTIMRTMLGFGYQDLAIIRPA 126 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 + + +S+ GAL + ++ + L++ L K + Q Sbjct: 127 VDIFNPHVVRSSMGALFSLRIHYYESIDEYLKEFGDHQCYPFMLKG--AKNIHQVKPVTP 184 Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +LI G E GL + I +LN++ + + L+ Sbjct: 185 HSLIFGNESSGLDDIYMTYG-QSVFIPHTNAIDSLNLAQSVGIGLFHFSQ 233 >gi|315924294|ref|ZP_07920517.1| TrmH family RNA methyltransferase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622365|gb|EFV02323.1| TrmH family RNA methyltransferase [Pseudoramibacter alactolyticus ATCC 23263] Length = 155 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 3/68 (4%) Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHM--PGIIKALNVSNAAAV 271 + + + ++ G E GL + M ++LN++N+ + Sbjct: 81 HGNQNYADIVFKNDDYIMFGRETAGLPKAIHARYPNKRFRIPMKNHPHARSLNLANSVNI 140 Query: 272 ALYITQNH 279 LY Sbjct: 141 VLYEALRQ 148 >gi|319406810|emb|CBI80443.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp. 1-1C] Length = 271 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 5/233 (2%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDK 103 + G +S+ L++ LL L + P P+ VP + +D Sbjct: 30 RQHQFVAEGKTILSSLLHSKEFSTLSLLVVAARLLSIMPILKETKPTCPIYCVPQKIMDD 89 Query: 104 IVGKEAVHQGLALETAPLLS---PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 I G L + L L + L+ VL +++ ++GAI R+A AF+ Sbjct: 90 IAGFHVHRGMLGIGERKKLPSLKKFLQNLPEKALISVLCGISNYESMGAIFRNAAAFAST 149 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K ++++GA +PY R ++ + + F+ LS + L Sbjct: 150 GIILDKTCCDPLYRKSIRASAGAALSVPYTRGDDIESIITALSDANFELYTLSPSATCYL 209 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + ALI G EG L + + + M ++N++ + + L Sbjct: 210 KDAKATKHTALIFGIEGNDLPTHILQKS-ETLRIPMAYGFDSINLATVSGLTL 261 >gi|225871140|ref|YP_002747087.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi 4047] gi|225700544|emb|CAW95025.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi 4047] Length = 182 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 3/152 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++SQ +VL P N G I R+ A + I P + + ++ + + Sbjct: 13 KDSQNHVVLFQPQIPQNTGNIARTCAATNTPLHIIRPMGFPIDDRKMKRAGLDYWDKLDI 72 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248 +L + L + + + + G E GL ++ A Sbjct: 73 RFYDHLDEFLAQCDGSLHVISKFADRVYSDEAYNDRQSH-YFLFGREDTGLPEPFMRQYA 131 Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LNVSNA + +Y Sbjct: 132 DRALRIPMNDEHVRSLNVSNAVCMIVYEALRQ 163 >gi|195572842|ref|XP_002104404.1| GD20941 [Drosophila simulans] gi|194200331|gb|EDX13907.1| GD20941 [Drosophila simulans] Length = 1138 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 22/64 (34%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 K L+LG E G+ + G++++LNV A ++ ++ Sbjct: 1070 HSTNFVDFKFPKKSILLLGHEKHGIPANLIGFLDYAVEIPQYGLVRSLNVHVAGSLFIWE 1129 Query: 276 TQNH 279 Sbjct: 1130 YCKQ 1133 >gi|322697910|gb|EFY89685.1| RNA methyltransferase, putative [Metarhizium acridum CQMa 102] Length = 556 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLH---MPGIIKALNVSNAAAVALY 274 L+LG EG GL + + A + + +LNVS AA + + Sbjct: 470 QHPCVLVLGNEGHGLPRQVKVAADFELSVPRFVQGSSVDSLNVSVAAGLLCH 521 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 19/116 (16%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTS----------QPENLFLYGVHTVSAALNNPSR 66 + + R +R+ +Q + R + YG V AAL R Sbjct: 189 NPQKQRSRIENREDDSIQDAVARPRRRAMLPMTIKYTTAASQFL-YGRSVVKAALQQGRR 247 Query: 67 KIFQLLATKNALAR------LDWDANLPHPFPVKTVPPQ--TIDKIVGKEAVHQGL 114 ++++L R + PV VP + + + H G Sbjct: 248 QLYKLYVYGGENRRGFDDNDAIINLAKARGVPVTIVPNEDQRLMDKMSMGRPHNGF 303 >gi|320538050|ref|ZP_08037952.1| RNA methyltransferase, TrmH family [Treponema phagedenis F0421] gi|320145105|gb|EFW36819.1| RNA methyltransferase, TrmH family [Treponema phagedenis F0421] Length = 268 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 74/267 (27%), Gaps = 22/267 (8%) Query: 32 KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANL 87 K+ K R + L AL N F + A ++ L Sbjct: 6 KLSDLPAKQRDRKILK--ILE---LAEQALQNKQELPFDEFYLQGLFKIAKEKISISPAL 60 Query: 88 PHPFPVKTVPPQT-----IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM---VLD 139 +TV + I+ + + G L+ P L + Sbjct: 61 LKDLQKETVLSKERVLFLINSLRHELYSITGSLPSEWDLIFPQLKNNSQRDCAVRPFFSG 120 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199 NI A F ++ SE V + A+ + Sbjct: 121 TAVYVENIRAPFNLGSIFRTAEAFGAEKIFLSEDCVSPQQ-PRAIRSAMGTIELVPWEHC 179 Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHLHMPG 258 + + P+ +K +++G+E GL P+ AT+ + M G Sbjct: 180 DLENLPKDLPVFALETGGTPIHSFRFPEKGIVMIGSEELGLSPQALRRATAGTVSIPMYG 239 Query: 259 IIKALNVSNAAAVALY---ITQNHFAK 282 ++NV A + ++ H + Sbjct: 240 SKASINVGVAFGILMHAWIEAVRHTNE 266 >gi|254416767|ref|ZP_05030517.1| RNA methyltransferase, TrmH family, group 1 [Microcoleus chthonoplastes PCC 7420] gi|196176507|gb|EDX71521.1| RNA methyltransferase, TrmH family, group 1 [Microcoleus chthonoplastes PCC 7420] Length = 262 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 19/49 (38%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ALI G E +GL A + +LN++ A AV Y Sbjct: 110 ALIFGPEDRGLSNDELNYAQRFVCIPANPEYPSLNLAQAVAVCCYELFQ 158 >gi|322710050|gb|EFZ01625.1| RNA methyltransferase, putative [Metarhizium anisopliae ARSEF 23] Length = 548 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLH---MPGIIKALNVSNAAAVALY 274 L+LG EG GL + + A + + +LNVS AA + + Sbjct: 462 QHPCVLVLGNEGHGLPRQIKVAADFELSVPRFVQGSSVDSLNVSVAAGLLCH 513 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 19/122 (15%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHT----------SQPENLFLYGVHTVSAA 60 + S ++ + R +R+ ++ + R + YG V AA Sbjct: 175 RPQSPQNPQKRRPRIENREDGTIEDAIARPRRRGMLPMTITYTTAASQFL-YGRSVVKAA 233 Query: 61 LNNPSRKIFQLLATKNALAR------LDWDANLPHPFPVKTVPPQ--TIDKIVGKEAVHQ 112 L R++++L R + + PV VP + + + H Sbjct: 234 LQQGRRQLYKLYVYGGENRRGVDDNDVIINLAKARGVPVTIVPNEDQRLMDKMSMGRPHN 293 Query: 113 GL 114 G Sbjct: 294 GF 295 >gi|262274801|ref|ZP_06052612.1| tRNA:Cm32/Um32 methyltransferase [Grimontia hollisae CIP 101886] gi|262221364|gb|EEY72678.1| tRNA:Cm32/Um32 methyltransferase [Grimontia hollisae CIP 101886] Length = 243 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 18/52 (34%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL + + + +LN++ A Y + Sbjct: 106 QHPVAFVFGRERTGLTNEELQACNFHVAIPANPAYSSLNLAMAVQTLCYEAR 157 >gi|307207954|gb|EFN85513.1| Probable methyltransferase TARBP1 [Harpegnathos saltator] Length = 1333 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K L+LG E G+ + + G+I++LNV AAA+ ++ + Sbjct: 1275 FEKKTILVLGNEKDGIPANFIPLFNTCVEIPQVGVIRSLNVHVAAAICIWQYASQ 1329 >gi|148359291|ref|YP_001250498.1| RNA methyltransferase [Legionella pneumophila str. Corby] gi|296107338|ref|YP_003619038.1| RNA methyltransferase [Legionella pneumophila 2300/99 Alcoy] gi|148281064|gb|ABQ55152.1| RNA methyltransferase [Legionella pneumophila str. Corby] gi|295649239|gb|ADG25086.1| RNA methyltransferase [Legionella pneumophila 2300/99 Alcoy] gi|307610445|emb|CBX00016.1| hypothetical protein LPW_17721 [Legionella pneumophila 130b] Length = 257 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + ++ +LN++ A + Y + Sbjct: 110 VAIVFGREHAGLTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELR 158 >gi|54297660|ref|YP_124029.1| hypothetical protein lpp1711 [Legionella pneumophila str. Paris] gi|53751445|emb|CAH12863.1| hypothetical protein lpp1711 [Legionella pneumophila str. Paris] Length = 257 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + ++ +LN++ A + Y + Sbjct: 110 VAIVFGREHAGLTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELR 158 >gi|312891695|ref|ZP_07751205.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM 18603] gi|311295879|gb|EFQ73038.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM 18603] Length = 177 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +K ALI G E G+ + E + G + N+ +A + L+ + Sbjct: 121 EKYALIFGNEVNGVADEVMEQIDGCIEIPQFGTKHSFNIVVSAGIILWDFFSKLN 175 >gi|194744594|ref|XP_001954778.1| GF18440 [Drosophila ananassae] gi|190627815|gb|EDV43339.1| GF18440 [Drosophila ananassae] Length = 1141 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 1/68 (1%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + K L+LG E G+ + G +++LNV ++ ++ Sbjct: 1072 HSTNFTEFKFPKKSILLLGHEKHGIPADLIGFLDYAVEIPQFGTVRSLNVHVTGSLFIWE 1131 Query: 276 T-QNHFAK 282 + H AK Sbjct: 1132 YCKQHLAK 1139 >gi|218888224|ref|YP_002437545.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218759178|gb|ACL10077.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 187 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 52/139 (37%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R L +VL +++DPHN+ AI RS AF + + SAS Sbjct: 10 WRQKDLTLVLANIHDPHNVSAIYRSCDAFGVAQVHLYYTDTAFPVLGRKSSASARKWVDT 69 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + + KPL A+I+G E G+ P+ E Sbjct: 70 VRHSDAQSLMRTLKEGGHRVLATSCTPAAKPLGDYDMTQPTAIIMGNEHSGVAPELVELV 129 Query: 249 TSMAHLHMPGIIKALNVSN 267 ++ M G+I++ NVS Sbjct: 130 DGEVYIPMYGMIQSFNVSV 148 >gi|126696822|ref|YP_001091708.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9301] gi|126543865|gb|ABO18107.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9301] Length = 237 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 74/232 (31%), Gaps = 17/232 (7%) Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L + + ++L T+ L + + + V + + + G+A Sbjct: 2 LKSGNSP-SKILVTEKWLIKNQNLSKQFDESLLTLVSEEVLASAIS-TVNPDGIAALVEI 59 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP---------- 170 P ++VLD + DP N+G + R+A+A D I P Sbjct: 60 SSIPNYQFNSKDDFILVLDRIQDPGNMGNLFRTALAAGVDAIFLAGGAHPLNQKVLRAST 119 Query: 171 ---SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 + ++ + S + KP + Sbjct: 120 GAVFNLPFKRYEGTEEEIINSLLKSLSELSNEGFKIFSTSSFNKSSKKTSKPYWEIDWTK 179 Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS-NAAAVALYITQN 278 LILG EG+G+ K QE + ++++LNV+ A + L + Sbjct: 180 STVLILGNEGQGIHKKIQEAFNETITIPHSELVESLNVACVAVPLLL-ERKR 230 >gi|54294634|ref|YP_127049.1| hypothetical protein lpl1711 [Legionella pneumophila str. Lens] gi|53754466|emb|CAH15950.1| hypothetical protein lpl1711 [Legionella pneumophila str. Lens] Length = 257 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + ++ +LN++ A + Y + Sbjct: 110 VAIVFGREHAGLTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELR 158 >gi|289613400|emb|CBI59653.1| unnamed protein product [Sordaria macrospora] Length = 593 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLH-MPGI--IKALNVSNAAAVA 272 + L+LG+EG+GL + + A ++ M G I +LNVS AA + Sbjct: 518 TNPCILLLGSEGEGLPGQIKSKADYEVNIPNMSGGTVIDSLNVSVAAGLL 567 Score = 44.4 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 9/117 (7%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65 E+ + + R N R+ +S +T+ YG V AAL Sbjct: 239 SSTRERRETDRTPRRELFRDNDREETTPKSL--SIPYTTAASQFL-YGTSVVEAALQAAR 295 Query: 66 RKIFQLLATKNA-LARLDWDANLPH-----PFPVKTVPPQTIDKIVGKEAVHQGLAL 116 RK+++L A +L DA + + V + + Sbjct: 296 RKLYKLYIYAGANREKLAKDAAIQKLAQRNKVEIVFVNEDGLKMMDKMSGSRPHNGY 352 >gi|152997509|ref|YP_001342344.1| RNA methyltransferase [Marinomonas sp. MWYL1] gi|150838433|gb|ABR72409.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas sp. MWYL1] Length = 240 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 19/49 (38%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + G E +GL + + H+ +LN+ A V Y + Sbjct: 107 TAFVFGREDRGLTNEELQRCNYHVHIPSVETFSSLNLGAAVQVIAYELR 155 >gi|116491172|ref|YP_810716.1| rRNA methylase (SpoU class) [Oenococcus oeni PSU-1] gi|118587352|ref|ZP_01544778.1| rRNA methyltransferase, SpoU family [Oenococcus oeni ATCC BAA-1163] gi|290890688|ref|ZP_06553758.1| hypothetical protein AWRIB429_1148 [Oenococcus oeni AWRIB429] gi|116091897|gb|ABJ57051.1| Predicted rRNA methylase (SpoU class) [Oenococcus oeni PSU-1] gi|118432176|gb|EAV38916.1| rRNA methyltransferase, SpoU family [Oenococcus oeni ATCC BAA-1163] gi|290479663|gb|EFD88317.1| hypothetical protein AWRIB429_1148 [Oenococcus oeni AWRIB429] Length = 168 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 231 LILGAEGKGLRP-KTQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 + G E GL ++ + +++LN+SN+ A+ LY Sbjct: 100 FLFGNEAYGLPEVFMRKNPEKAIRIPQNDQHVRSLNLSNSVAIVLYEAMRQQN 152 >gi|86131594|ref|ZP_01050192.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|85818039|gb|EAQ39207.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 179 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 29/56 (51%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 K ++ A++ G E KG++ + + ++ + G +LN+S +A V ++ + Sbjct: 121 KGERYAVVFGNEVKGVQQEIVSLSDTVLEIPQVGTKHSLNISVSAGVVIWDIFSKL 176 >gi|293394858|ref|ZP_06639148.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia odorifera DSM 4582] gi|291422609|gb|EFE95848.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia odorifera DSM 4582] Length = 241 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 24/71 (33%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + QE + +AL+ G E GL + + +LN++ Sbjct: 87 PWPMLEPRECGVRAVQEGEQAPVALVFGRERVGLTNDELQKCHYHVAIPANPDYSSLNLA 146 Query: 267 NAAAVALYITQ 277 A + Y + Sbjct: 147 MAVQILAYDVR 157 >gi|308799147|ref|XP_003074354.1| OBP33pep like protein (ISS) [Ostreococcus tauri] gi|116000525|emb|CAL50205.1| OBP33pep like protein (ISS) [Ostreococcus tauri] Length = 249 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 7/62 (11%) Query: 223 EIKNDKIALILGAE------GKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYI 275 A ++G E G GL + + ++ G +LNVS AA++ ++ Sbjct: 120 HPFTGNTAFVMGNEARLDAQGHGLTEQQKAICDGFVYIRQYGPGTASLNVSVAASIVMHQ 179 Query: 276 TQ 277 Sbjct: 180 FA 181 >gi|229551723|ref|ZP_04440448.1| SpoU family RNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|258507873|ref|YP_003170624.1| RNA methyltransferase [Lactobacillus rhamnosus GG] gi|258539119|ref|YP_003173618.1| TrmH family group 2 RNA methyltransferase [Lactobacillus rhamnosus Lc 705] gi|229314928|gb|EEN80901.1| SpoU family RNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|257147800|emb|CAR86773.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus rhamnosus GG] gi|257150795|emb|CAR89767.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus rhamnosus Lc 705] gi|259649200|dbj|BAI41362.1| putative rRNA methyltransferase [Lactobacillus rhamnosus GG] Length = 169 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--EHIPY 189 +VL P N G I R+ A + + ++ L ++ I Y Sbjct: 1 MANHIVLFEPLIPANTGNIARTCAATNSYLHLIKPLGFETDDKHLRRAGLDYWAKVRIVY 60 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248 + A K + + + + + + G E GL +E Sbjct: 61 HDSLDDFMATVKDPQHLYLITKFADQTYSDRDYTDTHADHYFLFGKETTGLPEGFMREHE 120 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++ALN+SN AA+ +Y Sbjct: 121 DQCLRIPMTANVRALNLSNCAALVVYEALRQ 151 >gi|119505400|ref|ZP_01627474.1| RNA methyltransferase, TrmH family, group 1 [marine gamma proteobacterium HTCC2080] gi|119458855|gb|EAW39956.1| RNA methyltransferase, TrmH family, group 1 [marine gamma proteobacterium HTCC2080] Length = 247 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 27/72 (37%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + ++ + +++ ++ G E +GL + E H+ +LN+ Sbjct: 88 PWPLQDAHHCGERLYRHAAQGEEVVILFGREDRGLLNEELELCNLHCHIPTHESYPSLNL 147 Query: 266 SNAAAVALYITQ 277 + A + Y + Sbjct: 148 AMAVQIVAYEIR 159 >gi|293364011|ref|ZP_06610747.1| RNA methyltransferase, TrmH family [Mycoplasma alligatoris A21JP2] gi|292552501|gb|EFF41275.1| RNA methyltransferase, TrmH family [Mycoplasma alligatoris A21JP2] Length = 201 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 4/139 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ LD++ DP N+G I+R + +F D +I + S +S GA+ + I ++N Sbjct: 61 VVFLDNLQDPGNVGTIIRLSKSFDIDTLI--VKNFDIYSPKCLRSTQGAIFNQNIILVNN 118 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 + HS + + L N K +I G EG G+ + + ++ Sbjct: 119 NDLLKELQHSGFEIVTTVLNQESIELNNFNFNKKTVVIFGNEGSGIEKEIINNSNKKIYI 178 Query: 255 HMPGIIKALNVSNAAAVAL 273 + ++LNV+ AA+ L Sbjct: 179 PIS--FESLNVATCAAIVL 195 >gi|237750840|ref|ZP_04581320.1| rRNA methylase [Helicobacter bilis ATCC 43879] gi|229373285|gb|EEO23676.1| rRNA methylase [Helicobacter bilis ATCC 43879] Length = 160 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 2/147 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +VL P N G I R VA + + ++ L ++ +H+ + Sbjct: 5 FHIVLVEPQIPQNTGNIGRLCVAANAMLHLIHPLGFSTKEKDLKRAGLDYWQHLKVYEWA 64 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMA 252 NL Q + K + L G E GL E+ + Sbjct: 65 NLESFWQTYTPDATHFFFSTKAKKLYF-EADLKHGAFLYFGREDAGLPLHILESFKNQIY 123 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++++N++ +A LY Sbjct: 124 KIPMQKGVRSINLATSAGAVLYEAVRQ 150 >gi|312962919|ref|ZP_07777406.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens WH6] gi|311282946|gb|EFQ61540.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens WH6] Length = 256 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + + H+ +LN+ A V Y + Sbjct: 110 IALVFGREDSGLTNEELQRCHYHVHIPSDPEFSSLNLGAAVQVLTYEVR 158 >gi|298346770|ref|YP_003719457.1| SpoU family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304389526|ref|ZP_07371489.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656772|ref|ZP_07909659.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236831|gb|ADI67963.1| SpoU family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304327336|gb|EFL94571.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492727|gb|EFU82331.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 154 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 49/150 (32%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L ++ N GA +R A + + + K L++ + Sbjct: 1 MLHVIFFEPRIAGNTGAAIRLAACTGATLHVVEP--TVFDLDNDTKLKRAGLDYHDLAHL 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 D + + + + L Q D L+ G E GL + + TS Sbjct: 59 ERHPDLDDCLAHVPGKLYAFTGHTDILLPQIQFQDGDGLMFGPEDTGLPVEVMDDPRVTS 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+S +AA+ LY Sbjct: 119 RVRIPMLDGRRSLNLSISAAIGLYYAWGQL 148 >gi|212703150|ref|ZP_03311278.1| hypothetical protein DESPIG_01190 [Desulfovibrio piger ATCC 29098] gi|212673416|gb|EEB33899.1| hypothetical protein DESPIG_01190 [Desulfovibrio piger ATCC 29098] Length = 253 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-----TQNH 279 +K+A++ G E +GL + + + +LN++ + + LY Sbjct: 110 EKVAIVFGPEDRGLDNDAIQHCQRLVTIPTNPEASSLNLAQSVLLLLYECAKAVRARQ 167 >gi|199599122|ref|ZP_03212527.1| Predicted rRNA methylase (SpoU class) [Lactobacillus rhamnosus HN001] gi|199590015|gb|EDY98116.1| Predicted rRNA methylase (SpoU class) [Lactobacillus rhamnosus HN001] Length = 169 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--EHIPY 189 +VL P N G I R+ A + + ++ L ++ I Y Sbjct: 1 MANHIVLFEPLIPANTGNIARTCAATNSYLHLIKPLGFETDDKHLRRAGLDYWAKVRIIY 60 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248 + A K + + + + + + G E GL +E Sbjct: 61 HDSLDDFMATVKDPQHLYLITKFADQTYSDRDYTDTHADHYFLFGKETTGLPEGFMREHE 120 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M ++ALN+SN AA+ +Y Sbjct: 121 DQCLRIPMTANVRALNLSNCAALVVYEALRQ 151 >gi|154488135|ref|ZP_02029252.1| hypothetical protein BIFADO_01706 [Bifidobacterium adolescentis L2-32] gi|154083608|gb|EDN82653.1| hypothetical protein BIFADO_01706 [Bifidobacterium adolescentis L2-32] Length = 304 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+E ++ ++ GAEG GL K E A + ++ G ++++N AAAV+++ Sbjct: 238 PMETYHFPERCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMHAWIA 297 Query: 279 H 279 Sbjct: 298 Q 298 >gi|298253229|ref|ZP_06977021.1| rRNA methylase [Gardnerella vaginalis 5-1] gi|297532624|gb|EFH71510.1| rRNA methylase [Gardnerella vaginalis 5-1] Length = 268 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +E + ++ GAEG GL K E A + ++ G +++LN AAAV+++ Sbjct: 203 MENYKFPKRCLMLFGAEGPGLSKKALEMADDVVYISQFGSVRSLNAGAAAAVSMHAWIAQ 262 >gi|322391473|ref|ZP_08064942.1| TrmH family RNA methyltransferase [Streptococcus peroris ATCC 700780] gi|321145556|gb|EFX40948.1| TrmH family RNA methyltransferase [Streptococcus peroris ATCC 700780] Length = 167 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MTNHIVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDIYF 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L + + KM+ + ++ + G E KGL K +E Sbjct: 61 YDSLDEFMGKMNGQLYLIS-KFAEKVYSDADFTTEGNHYFLFGREDKGLPEKFMREHPDK 119 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151 >gi|282163400|ref|YP_003355785.1| putative RNA methyltransferase [Methanocella paludicola SANAE] gi|282155714|dbj|BAI60802.1| putative RNA methyltransferase [Methanocella paludicola SANAE] Length = 235 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 28/74 (37%) Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 H + + E K+ ALI G E GL + E +A++ Sbjct: 84 HINSHVRYPFYNPKELRTMLEDKSGTAALIFGREDAGLPNEIVERCDIVAYIPTSKDYPI 143 Query: 263 LNVSNAAAVALYIT 276 +N++ A ++ LY Sbjct: 144 MNLAQAVSIFLYEL 157 >gi|307188520|gb|EFN73257.1| RNA methyltransferase-like protein 1 [Camponotus floridanus] Length = 459 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 4/59 (6%) Query: 226 NDKIALILGAEGKGLR----PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +I L++G E +G+ ++ + +++LNV AA + + + F Sbjct: 393 KKEIVLVIGGETEGVSLESCKLLHARNCVRVNIPLTNGVESLNVGVAAGIVTFEMKRQF 451 Score = 43.7 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 4/171 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 + R + + + N+ L G + + + + + + L Sbjct: 118 DDRLINSLMVNVKTRTKREKNNNMLLEGFRLIKDGIQAGIKPKAIFFSRLSDILPLS--- 174 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145 L + VP +TI + P ++ L ++ D++ +P Sbjct: 175 -LSKEIKLYKVPYRTIQLWSNLTTSPGIFGIFEIPDVTAKQPVDDAIPLTIICDNIREPG 233 Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 N+G ILR+A A C+ ++ K + + + ++A GA +P Sbjct: 234 NLGTILRAAAAVGCEKLLLMKGCTDLWDSKVLRTAVGAHFRVPIHTSVLWN 284 >gi|242279118|ref|YP_002991247.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio salexigens DSM 2638] gi|242122012|gb|ACS79708.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio salexigens DSM 2638] Length = 161 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 47/145 (32%), Gaps = 2/145 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R + L ++ + Sbjct: 8 NPFSIVLFEPEIPPNTGNIARLCAGTDTQLHLIEPLGFSISDKHLKRAGLDYWPKVKLSV 67 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 N + + + + + S+ L + L+LG E +GL + Sbjct: 68 WKNWQEYKEN--AKPQRLVTTSAKRGTHLFEFKFLPGDHLVLGPETRGLPEWMFDEFKHA 125 Query: 252 AHLHMPGIIKALNVSNAAAVALYIT 276 ++ +++LN+S +A + LY Sbjct: 126 VNIPTTDNVRSLNLSTSAGIILYQA 150 >gi|291277503|ref|YP_003517275.1| putative RNA methylase [Helicobacter mustelae 12198] gi|290964697|emb|CBG40552.1| putative RNA methylase [Helicobacter mustelae 12198] Length = 154 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 2/148 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL P N G I R VA + + L ++ + Sbjct: 1 MIHIVLIEPRIPQNTGNIGRLCVAAGARLHLIHPLGFSIDEKALKRAGMDYWRVLDLREW 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSM 251 NL + + + + LS+ +KK + + L G E G+ + A + Sbjct: 61 KNLQEFWESH-PFDHKHFLLSTKAKKIYYEAPFCRECFLYFGREDAGIDSGILQTYAKQV 119 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I+++N++ + V LY Sbjct: 120 YKIPMQKNIRSINLATSVGVVLYEAIRQ 147 >gi|319946468|ref|ZP_08020705.1| RNA methyltransferase [Streptococcus australis ATCC 700641] gi|319747436|gb|EFV99692.1| RNA methyltransferase [Streptococcus australis ATCC 700641] Length = 180 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 2/146 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + +L Sbjct: 17 VVLYQPQIPQNTGNIARTCAATNAPLHIIRPMAFPIDDRKMKRAGLDYWDKLDVRFYDSL 76 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254 + ++ + +D N + I G E KGL A + Sbjct: 77 DEFMEATTGGKVHLVSKFADQTYSNVNYNDNLEHYFIFGREDKGLPEDFMRLHAEKAIRI 136 Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279 M +++LNVSN + +Y Sbjct: 137 PMNDEHVRSLNVSNTVCMIVYEALRQ 162 >gi|239994266|ref|ZP_04714790.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Alteromonas macleodii ATCC 27126] Length = 254 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 27/72 (37%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + D + L QE++ +AL+ G E GL + + + +LN+ Sbjct: 86 HSWPMLGPRDCGEKLVQEVEKYPVALVFGRENSGLTNEELQQCHFHMCIPANPEYSSLNL 145 Query: 266 SNAAAVALYITQ 277 + A Y + Sbjct: 146 AAAVQTLCYEIR 157 >gi|297201026|ref|ZP_06918423.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083] gi|197712190|gb|EDY56224.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083] Length = 248 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 69/231 (29%), Gaps = 10/231 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD----WDANLPHPFPVKTVPPQTIDKI 104 + L G H + A+ + + + A L D + VP + Sbjct: 18 VLLDGFHALKHAVRFGAEVPVAVAVDRGAALALAEELAPDVRDTLDALLTQVPESAYASL 77 Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 V + AL P + L+ + ++ + +++P N+G + G Sbjct: 78 VPRPHPTGVAALAVRPSRAAHLEKLAHTPRTTPVVVLDNPRNLGNAGAVIRLAAGFGATG 137 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + GA H + + + Sbjct: 138 VVTTGTLDPWHPTVVRGGAGLHFATAVER------LTVAELPPGPVFALDPEGDDIRGVK 191 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 D L G+E GL P+ + A + L M + + N++ + A+ LY Sbjct: 192 LPDDAVLAFGSERSGLSPELRARAGHLVALPMRPQVSSYNLATSVAMTLYH 242 >gi|114320401|ref|YP_742084.1| RNA methyltransferase [Alkalilimnicola ehrlichii MLHE-1] gi|114226795|gb|ABI56594.1| RNA methyltransferase, TrmH family, group 1 [Alkalilimnicola ehrlichii MLHE-1] Length = 260 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +AL+ G E GL + ++ H+ +LN++ A V + Sbjct: 117 SRPVALLFGRERSGLTNAELDRCQALVHIPANPEYGSLNLAAAVQVVCHEVN 168 >gi|50365192|ref|YP_053617.1| rRNA methyltransferase [Mesoplasma florum L1] gi|50363748|gb|AAT75733.1| rRNA methyltransferase [Mesoplasma florum L1] Length = 179 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 15/152 (9%), Positives = 40/152 (26%), Gaps = 1/152 (0%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + +++ + + I + II + + + SA Sbjct: 1 MERQVNIVLYEPEIAQNVAAIIRTCVATNAKLHIIEPLGFIFKKEEMNRASAGTFDLVEY 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-T 247 + + F + + ++ G E G+ + + Sbjct: 61 QLYDDWEDFCEKNPSIDLFCISRYGEKPHSDFDFNSYQKPVFVMFGKESTGIPKQIIKDN 120 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L M +++NV+N + Y Sbjct: 121 YENTFRLPMSPQTRSINVANTVGIVTYEILRQ 152 >gi|332141980|ref|YP_004427718.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552002|gb|AEA98720.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 261 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 27/72 (37%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + D + L QE++ +AL+ G E GL + + + +LN+ Sbjct: 86 HSWPMLGPRDCGEKLVQEVEKYPVALVFGRENSGLTNEELQQCHFHMCIPANPEYSSLNL 145 Query: 266 SNAAAVALYITQ 277 + A Y + Sbjct: 146 AAAVQTLCYEIR 157 >gi|198452347|ref|XP_001358733.2| GA15007 [Drosophila pseudoobscura pseudoobscura] gi|198131892|gb|EAL27876.2| GA15007 [Drosophila pseudoobscura pseudoobscura] Length = 1165 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 21/64 (32%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 K L+LG E G+ + G++++LNV ++ ++ Sbjct: 1099 HSVSFANFKFPKKCVLLLGHEKHGIPADLIGFLDYAVEIPQFGVVRSLNVHVTGSLFIWE 1158 Query: 276 TQNH 279 Sbjct: 1159 YCKQ 1162 >gi|71281163|ref|YP_267872.1| RNA methyltransferase [Colwellia psychrerythraea 34H] gi|71146903|gb|AAZ27376.1| RNA methyltransferase, TrmH family, group 1 [Colwellia psychrerythraea 34H] Length = 273 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 23/71 (32%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + + E +AL+ G E GL + + + +LN++ Sbjct: 103 PWPMLEPRGCGEKMIAEADEYPVALVFGRENSGLTNEELQLCHFHVQIPANPEYSSLNLA 162 Query: 267 NAAAVALYITQ 277 A Y + Sbjct: 163 MAVQTLSYEVR 173 >gi|54020406|ref|YP_115752.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 232] gi|53987579|gb|AAV27780.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 232] gi|144575296|gb|AAZ53517.2| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448] gi|312601121|gb|ADQ90376.1| TRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168] Length = 174 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 43/155 (27%), Gaps = 6/155 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL N G I+RS I + L + A+G L I Sbjct: 1 MINIVLFQPEIGPNTGNIIRSCFVAGLKLHIIMPIAFDLDPKHLKRPAAGILLSEIEHEI 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-----DKIALILGAEGKGLRPKTQET 247 + + K E + I + G E G+ + + Sbjct: 61 HKNWQNFSEKYGQKNLFFITRYGQKLYTEVDFYTEIETKKDIFFVFGRESTGIPIEILKK 120 Query: 248 ATS-MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M ++LN++N + Y Sbjct: 121 NKEKCLRIPMIAKARSLNLANTVVIIAYEFHRQLN 155 >gi|240949393|ref|ZP_04753734.1| tRNA/rRNA methyltransferase [Actinobacillus minor NM305] gi|240296142|gb|EER46798.1| tRNA/rRNA methyltransferase [Actinobacillus minor NM305] Length = 244 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 Q K+AL+ G E GL + ++ +LN++ A +A Y + Sbjct: 104 QHTLKGKVALVFGRERIGLTNEELLKCHYHLNIPTNPEYGSLNLAMAVQLACYEIR 159 >gi|330797178|ref|XP_003286639.1| hypothetical protein DICPUDRAFT_14626 [Dictyostelium purpureum] gi|325083387|gb|EGC36841.1| hypothetical protein DICPUDRAFT_14626 [Dictyostelium purpureum] Length = 1558 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +K L+LG E G+ + G I++LNV +A++ ++ Sbjct: 1495 FQFPEKCLLLLGQEQNGIPANYLTIVDYCVEIPQLGQIRSLNVHVSASIVIWE 1547 >gi|300691860|ref|YP_003752855.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum PSI07] gi|299078920|emb|CBJ51581.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum PSI07] Length = 286 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL + E + H+ +LN+S A + Y + Sbjct: 138 VAFVFGNERFGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVR 186 >gi|241662700|ref|YP_002981060.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D] gi|309781257|ref|ZP_07675994.1| tRNA/rRNA methyltransferase [Ralstonia sp. 5_7_47FAA] gi|240864727|gb|ACS62388.1| RNA methyltransferase, TrmH family, group 1 [Ralstonia pickettii 12D] gi|308920078|gb|EFP65738.1| tRNA/rRNA methyltransferase [Ralstonia sp. 5_7_47FAA] Length = 294 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL + E + H+ +LN+S A + Y + Sbjct: 145 VAFVFGNERFGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVR 193 >gi|187928095|ref|YP_001898582.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J] gi|187724985|gb|ACD26150.1| RNA methyltransferase, TrmH family, group 1 [Ralstonia pickettii 12J] Length = 282 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL + E + H+ +LN+S A + Y + Sbjct: 133 VAFVFGNERFGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVR 181 >gi|144227485|gb|AAZ44230.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J] Length = 174 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 43/155 (27%), Gaps = 6/155 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + +VL N G I+RS I E L + A+G L I Sbjct: 1 MINIVLFQPEIGPNTGNIIRSCFVAGLKLHIIMPIAFDLEPKHLKRPAAGILLSEIEHEI 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-----DKIALILGAEGKGLRPKTQET 247 + + K E + I + G E G+ + + Sbjct: 61 HKNWQNFSEKYGQKNLFFITRYGQKLYTEVDFYTEIETKKDIFFVFGRESTGIPIEILKK 120 Query: 248 ATS-MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M ++LN++N + Y Sbjct: 121 NKEKCLRIPMIAKARSLNLANTVVIIAYEFHRQLN 155 >gi|163755971|ref|ZP_02163088.1| RNA methyltransferase, TrmH family, group 2 [Kordia algicida OT-1] gi|161324142|gb|EDP95474.1| RNA methyltransferase, TrmH family, group 2 [Kordia algicida OT-1] Length = 150 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 2/99 (2%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 A + G + + LSS +K ++ D++ L+ G E GL + Sbjct: 52 YWQHLEVHIYENTAEFYAKNAGKKMVYLSSHGQKTYDEIPYEDELFLVFGKESVGLSEEI 111 Query: 245 QETATSMA-HLHMPGI-IKALNVSNAAAVALYITQNHFA 281 E + M I++LN++NA ++ +Y Sbjct: 112 VENNKEHLYTIPMFSEHIRSLNLANAVSIVVYEGIRRLK 150 >gi|152981160|ref|YP_001352989.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille] gi|151281237|gb|ABR89647.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille] Length = 253 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A++ G E GL + E + ++ +LN++ A V Y + Sbjct: 119 RAAVVFGNERFGLPNEIVEKCNVLINISANPDYSSLNLAQAVQVLAYEAR 168 >gi|70944707|ref|XP_742256.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56521130|emb|CAH74309.1| hypothetical protein PC000031.00.0 [Plasmodium chabaudi chabaudi] Length = 867 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 58/147 (39%), Gaps = 1/147 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIP 188 + + L+++ ++ N+ + R+ F+ ++ + S + +I Sbjct: 720 KKNNLIVIASLIDKVPNLAGLCRTCEIFNVKKLLLSNINIVKDFQFQKISSTANKWMNIQ 779 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ ++ L K ++ K L I +K LILG E +GL Sbjct: 780 ELKKKDIIKYLIKKKKKYSIIGLEQTNDSKRLNDFIFPEKCILILGDEKEGLPSSILLLL 839 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYI 275 + GII++LNV +AA+ +Y Sbjct: 840 HHCVEIPGHGIIRSLNVHVSAAITIYE 866 >gi|84489842|ref|YP_448074.1| rRNA methylase [Methanosphaera stadtmanae DSM 3091] gi|84373161|gb|ABC57431.1| predicted rRNA methylase [Methanosphaera stadtmanae DSM 3091] Length = 238 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 N IAL+ G EG GL + E + + +N+++AAA+ Y + Sbjct: 102 MHVNGNIALLFGREGDGLNNQEIEQCDILVTIPTSDEYPIMNITHAAAIIFYEIFKN 158 >gi|241895125|ref|ZP_04782421.1| hypothetical RNA methyltransferase [Weissella paramesenteroides ATCC 33313] gi|241871621|gb|EER75372.1| hypothetical RNA methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 201 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 2/100 (2%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 +EH I + + L + + + L K A + G E GL Sbjct: 98 EHIEHHRIIDYPAIFEHLHQEGYTIYAVDNTPGYDPQSLYDMHFPAKSAFLFGEEKLGLA 157 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVA--LYITQNH 279 A +M ++ G ++++NV A V Y +Q+ Sbjct: 158 DDLINAADAMVYIPQYGSVRSINVGVAHGVIAAFYASQHQ 197 >gi|115372384|ref|ZP_01459693.1| rRNA methylase [Stigmatella aurantiaca DW4/3-1] gi|310819547|ref|YP_003951905.1| tRNA (guanosine-2'-o-)-methyltransferase [Stigmatella aurantiaca DW4/3-1] gi|115370597|gb|EAU69523.1| rRNA methylase [Stigmatella aurantiaca DW4/3-1] gi|309392619|gb|ADO70078.1| tRNA (Guanosine-2'-O-)-methyltransferase [Stigmatella aurantiaca DW4/3-1] Length = 226 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 43/144 (29%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R +VLD + D N+ A+LR+ A + + Sbjct: 36 QRTRTFTVVLDRLEDSFNMAAVLRTCEAMGVQEVHVVINPEAPFLPNSRVAQGCDKWLDV 95 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + + L + K+A++ G E G+ Sbjct: 96 KLYKTFAECREHLQERGFALYASAIREGATSLYSMRFDSKVAIVFGNERFGVSEDVLAGV 155 Query: 249 TSMAHLHMPGIIKALNVSNAAAVA 272 + M G +++N+S AA+ Sbjct: 156 DGTFWIPMRGFSQSINISAAASAC 179 >gi|319403804|emb|CBI77388.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella rochalimae ATCC BAA-1498] Length = 271 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 90/233 (38%), Gaps = 5/233 (2%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDK 103 + G +S+ L++ LL L + P P+ VP + +D Sbjct: 30 RQHQFIAEGKTILSSLLHSKEFSTLSLLVVAARLLSIMPILKETKPTCPIYCVPQKIMDD 89 Query: 104 IVGKEAVHQGLALETAPLLS---PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 I G L + L L + L+ VL +++ ++GAI R+A AF+ Sbjct: 90 IAGFHVHRGMLGIGERKKLPSLKKFLQNLPEKALISVLCGISNYESMGAIFRNAAAFAST 149 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GII K +++SGA +PY R ++ + + + F+ LS + L Sbjct: 150 GIILDKTSCDPLYRKSIRASSGAALSVPYTRGDDIESIITALSNANFKLYTLSPSATCYL 209 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + ALI G EG L + + + M ++N++ + + L Sbjct: 210 KDAKATKHTALIFGIEGNDLPTHILQKS-ETLRIPMAYGFDSINLATVSGLTL 261 >gi|229592455|ref|YP_002874574.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens SBW25] gi|229364321|emb|CAY52068.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens SBW25] Length = 256 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + + H+ +LN+ A V Y + Sbjct: 110 IALVFGREDSGLTNEELQRCHYHVHIPSDPDFSSLNLGAAVQVLSYEVR 158 >gi|153004019|ref|YP_001378344.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5] gi|152027592|gb|ABS25360.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5] Length = 230 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 24/53 (45%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++A++ G E +GL E ++ + ++N++ + AV Y Sbjct: 96 HGEVAVVFGQERRGLSDAELELCQAVCSIPTAPAYDSMNLAQSVAVLAYEIGR 148 >gi|119719459|ref|YP_919954.1| RNA methyltransferase [Thermofilum pendens Hrk 5] gi|119524579|gb|ABL77951.1| RNA methyltransferase, TrmH family, group 1 [Thermofilum pendens Hrk 5] Length = 257 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +++G E GL + + + +LN S+AAA+ Y N Sbjct: 121 VVIGREDWGLSAEELSICDMLVTIEANPEYPSLNASHAAAIVFYELFN 168 >gi|13541410|ref|NP_111098.1| rRNA methylase [Thermoplasma volcanium GSS1] gi|14324793|dbj|BAB59720.1| hypothetical protein [Thermoplasma volcanium GSS1] Length = 250 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + E + K+AL+ G E GLR + + ++ N+S+A A+ LY+ Sbjct: 104 FWKQMESQTGKVALVFGREDDGLRNEELDLCNYFIYIPGNPDYPVYNLSHAVAIVLYVMY 163 Query: 278 N 278 Sbjct: 164 R 164 >gi|283782612|ref|YP_003373366.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05] gi|283441898|gb|ADB14364.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05] Length = 268 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +E + ++ GAEG GL K E A + ++ G +++LN AAAV+++ Sbjct: 203 MENYKFPKRCLMLFGAEGPGLSKKALEMADDVVYISQFGSVRSLNAGAAAAVSMHAWIAQ 262 >gi|195391444|ref|XP_002054370.1| GJ24409 [Drosophila virilis] gi|194152456|gb|EDW67890.1| GJ24409 [Drosophila virilis] Length = 1161 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 1/61 (1%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH-FA 281 +K L+LG E G+ + G++++LNV ++ ++ Sbjct: 1100 FKFPEKCILLLGHEKHGIPVDLIALLDYAVEIPQFGVVRSLNVHVTGSLFIWEYCKQYLN 1159 Query: 282 K 282 K Sbjct: 1160 K 1160 >gi|308802576|ref|XP_003078601.1| RNA methyltransferase TrmH, group 1 (ISS) [Ostreococcus tauri] gi|116057054|emb|CAL51481.1| RNA methyltransferase TrmH, group 1 (ISS) [Ostreococcus tauri] Length = 232 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL---YITQ 277 K+AL+ G E GL + ++ + M ++++L+V++A +AL Y + Sbjct: 170 GKLALVFGNEADGLTKEEIAACDAVCTIPMGRLVESLSVTHAGVIALSRYYERR 223 >gi|297243148|ref|ZP_06927086.1| rRNA methylase [Gardnerella vaginalis AMD] gi|296889359|gb|EFH28093.1| rRNA methylase [Gardnerella vaginalis AMD] Length = 268 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +E + ++ GAEG GL K E A + ++ G +++LN AAAV+++ Sbjct: 203 MENYKFPKRCLMLFGAEGPGLSKKALEMADDVVYISQFGSVRSLNAGAAAAVSMHAWIAQ 262 >gi|148979594|ref|ZP_01815599.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium SWAT-3] gi|145961679|gb|EDK26976.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium SWAT-3] Length = 242 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 24/70 (34%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + E + +AL+ G E GL + + + +LN++ Sbjct: 88 WPMLEPRECAEKFAVEGQKHPVALVFGRERTGLTNEELQKCHYHVCIPANPEYSSLNLAM 147 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 148 AVQTLSYEVR 157 >gi|146283375|ref|YP_001173528.1| methyltransferase [Pseudomonas stutzeri A1501] gi|145571580|gb|ABP80686.1| probable methyltransferase [Pseudomonas stutzeri A1501] gi|327481767|gb|AEA85077.1| methyltransferase [Pseudomonas stutzeri DSM 4166] Length = 278 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ +LN++ A V Y + Sbjct: 131 VALVFGREYAGLTNEELQRCQYHVHIPSDPQFSSLNLAAAVQVLTYEVR 179 >gi|90023109|ref|YP_528936.1| tRNA/rRNA methyltransferase (SpoU) family protein [Saccharophagus degradans 2-40] gi|89952709|gb|ABD82724.1| tRNA/rRNA methyltransferase (SpoU) [Saccharophagus degradans 2-40] Length = 161 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 4/142 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + ++++ +V NIG ++R+A AF + I R S A Sbjct: 1 MKFVLLIFNVQSNTNIGQLIRTANAFGAEEICVIGRKKFSTYGNQ----KTASTTKFRHF 56 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + ++ K + + I+G EG G+ + Sbjct: 57 FQIDEAFEYYGQAGYDFVGVEITEQAKSINKMRFERDTLFIMGNEGDGIHENILKRCHYC 116 Query: 252 AHLHMPGIIKALNVSNAAAVAL 273 ++ G ++NV+ A + Sbjct: 117 VYIPQYGTGASINVNTACGIIF 138 >gi|30249901|ref|NP_841971.1| rRNA methyltransferase [Nitrosomonas europaea ATCC 19718] gi|30180938|emb|CAD85864.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1 [Nitrosomonas europaea ATCC 19718] Length = 246 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 19/52 (36%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +AL+ G E GL + +LN++ A + Y + Sbjct: 111 HHPVALLFGRESAGLTSAEISHCQLTVQIPANSAYSSLNLAAAVQIMAYELR 162 >gi|226355084|ref|YP_002784824.1| tRNA/rRNA methyltransferase yibK [Deinococcus deserti VCD115] gi|226317074|gb|ACO45070.1| putative tRNA/rRNA methyltransferase yibK [Deinococcus deserti VCD115] Length = 148 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 1/62 (1%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 Q L+ G E +GL ++ L PG ++LN++ AA VA + Sbjct: 86 YTQAGFQQGDYLLFGPESRGLPAWLRDAL-PKLKLPQPGGGRSLNLAVAAGVAAFEAGRQ 144 Query: 280 FA 281 Sbjct: 145 IK 146 >gi|268593202|ref|ZP_06127423.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia rettgeri DSM 1131] gi|291311250|gb|EFE51703.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia rettgeri DSM 1131] Length = 243 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 26/70 (37%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + ++ K +A++ G E GL + + ++ +LN++ Sbjct: 88 WPMVEPRECGVKSVEQSKESPVAIVFGRERVGLTNEELQKCQYHLYIPTNPEYGSLNLAM 147 Query: 268 AAAVALYITQ 277 A + Y + Sbjct: 148 AVQLVSYEIR 157 >gi|254480252|ref|ZP_05093500.1| RNA methyltransferase, TrmH family, group 1 [marine gamma proteobacterium HTCC2148] gi|214039814|gb|EEB80473.1| RNA methyltransferase, TrmH family, group 1 [marine gamma proteobacterium HTCC2148] Length = 250 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E +GL + ++ +LN++ A V Y + Sbjct: 110 VAVLFGREDRGLTNDELKLCNLHLNIPTSEDYSSLNLAMAVQVVCYELR 158 >gi|83594701|ref|YP_428453.1| tRNA/rRNA methyltransferase SpoU [Rhodospirillum rubrum ATCC 11170] gi|83577615|gb|ABC24166.1| tRNA/rRNA methyltransferase (SpoU) [Rhodospirillum rubrum ATCC 11170] Length = 203 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 A +LGAE GL P + + M ++N+ A A+ LY Sbjct: 95 FRHPSCAAYVLGAERHGLSPAMLARCDHVVKIPMRF---SINLGMAGAIVLYDR 145 >gi|308234639|ref|ZP_07665376.1| RNA methyltransferase, TrmH family protein [Gardnerella vaginalis ATCC 14018] Length = 268 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +E + ++ GAEG GL K + A + ++ G +++LN AAAV+++ Sbjct: 203 METYKFPKRCLMLFGAEGPGLSKKALKMADDVVYISQFGSVRSLNAGAAAAVSMHAWIAQ 262 >gi|227489272|ref|ZP_03919588.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227540862|ref|ZP_03970911.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227090803|gb|EEI26115.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227183394|gb|EEI64366.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] Length = 213 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 4/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + +++ + NIG ++R+A AF+ D + R + + L H Sbjct: 60 RRHPLHIAIENFENDMNIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLMHHDT 119 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I Q + I S + ++ L+ G EG G+ P+ Q+ A Sbjct: 120 IADLISWANEQDLQVLAIDNIPGSVPLET----ATLPERCLLLFGQEGPGVTPEAQDAAV 175 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G +++N AA +A++ Sbjct: 176 MTLSIAQFGSTRSINAGVAAGIAMHTWIRQ 205 >gi|183599756|ref|ZP_02961249.1| hypothetical protein PROSTU_03261 [Providencia stuartii ATCC 25827] gi|188022017|gb|EDU60057.1| hypothetical protein PROSTU_03261 [Providencia stuartii ATCC 25827] Length = 243 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 26/70 (37%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + + K +A+I G E GL + + ++ +LN++ Sbjct: 88 WPMVAPRECGEKSVMQAKTAPVAIIFGRERIGLTNEELQKCQYHLYIPTNPEYGSLNLAM 147 Query: 268 AAAVALYITQ 277 A + Y + Sbjct: 148 AVQLVSYEIR 157 >gi|319637892|ref|ZP_07992658.1| SpoU methylase [Neisseria mucosa C102] gi|317401047|gb|EFV81702.1| SpoU methylase [Neisseria mucosa C102] Length = 271 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+AL+ G E GL + + + ++ +LN++ A V Y + Sbjct: 138 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190 >gi|304387338|ref|ZP_07369530.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091] gi|304338589|gb|EFM04707.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091] Length = 272 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+AL+ G E GL + + + ++ +LN++ A V Y + Sbjct: 138 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190 >gi|298368968|ref|ZP_06980286.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sp. oral taxon 014 str. F0314] gi|298282971|gb|EFI24458.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sp. oral taxon 014 str. F0314] Length = 271 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+AL+ G E GL + + + ++ +LN++ A V Y + Sbjct: 138 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190 >gi|296314460|ref|ZP_06864401.1| RNA methyltransferase, TrmH family, group 1 [Neisseria polysaccharea ATCC 43768] gi|296838750|gb|EFH22688.1| RNA methyltransferase, TrmH family, group 1 [Neisseria polysaccharea ATCC 43768] Length = 271 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+AL+ G E GL + + + ++ +LN++ A V Y + Sbjct: 138 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190 >gi|255065931|ref|ZP_05317786.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sicca ATCC 29256] gi|255049842|gb|EET45306.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sicca ATCC 29256] Length = 271 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+AL+ G E GL + + + ++ +LN++ A V Y + Sbjct: 138 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190 >gi|254673050|emb|CBA07666.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis alpha275] Length = 271 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+AL+ G E GL + + + ++ +LN++ A V Y + Sbjct: 138 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190 >gi|254670560|emb|CBA06425.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis alpha153] Length = 271 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+AL+ G E GL + + + ++ +LN++ A V Y + Sbjct: 138 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190 >gi|254805142|ref|YP_003083363.1| putative RNA methyltransferase [Neisseria meningitidis alpha14] gi|254668684|emb|CBA06409.1| putative RNA methyltransferase [Neisseria meningitidis alpha14] Length = 272 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+AL+ G E GL + + + ++ +LN++ A V Y + Sbjct: 138 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190 >gi|227875350|ref|ZP_03993492.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] gi|269976366|ref|ZP_06183358.1| probable tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1] gi|306818665|ref|ZP_07452387.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239] gi|307700709|ref|ZP_07637734.1| RNA methyltransferase, TrmH family, group 2 [Mobiluncus mulieris FB024-16] gi|227844255|gb|EEJ54422.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] gi|269935437|gb|EEZ91979.1| probable tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1] gi|304648351|gb|EFM45654.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239] gi|307613704|gb|EFN92948.1| RNA methyltransferase, TrmH family, group 2 [Mobiluncus mulieris FB024-16] Length = 153 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 5/150 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L ++ N GA +R A + E L ++ + + Sbjct: 1 MLHVIFYQPRIAGNTGAAIRLAACTGATLHVVEPTVFDFEDTKLKRAGLD---YHDLAHL 57 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 D + + + ++ L D AL+ G E GL + TS Sbjct: 58 QRHPDLDDCFAAIPGKIYAFTGHTEVMLPSVHFQDGDALMFGPEDTGLPVPVMDDPRVTS 117 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN++ +AAV LY Sbjct: 118 RVRIPMLEGRRSLNLAISAAVGLYFAWGQL 147 >gi|20806774|ref|NP_621945.1| rRNA methylase (SpoU class) [Thermoanaerobacter tengcongensis MB4] gi|20515234|gb|AAM23549.1| predicted rRNA methylase (SpoU class) [Thermoanaerobacter tengcongensis MB4] Length = 156 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 3/65 (4%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGII--KALNVSNAAAVALYI 275 + D+ LI G E GL E + M I ++LN+SN+ A+ +Y Sbjct: 86 YYHEVKYEDEAFLIFGKETTGLPQWLIDEYYEDCIRIPMHEKILWRSLNLSNSVAIIVYE 145 Query: 276 TQNHF 280 Sbjct: 146 ALKQL 150 >gi|15677213|ref|NP_274366.1| putative RNA methylase [Neisseria meningitidis MC58] gi|7226592|gb|AAF41722.1| putative RNA methylase [Neisseria meningitidis MC58] gi|261392376|emb|CAX49916.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis 8013] gi|308389465|gb|ADO31785.1| putative RNA methylase; SpoU family [Neisseria meningitidis alpha710] gi|316984154|gb|EFV63132.1| RNA methyltransferase, TrmH family, group 1 family protein [Neisseria meningitidis H44/76] gi|319410611|emb|CBY90980.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis WUE 2594] gi|325128461|gb|EGC51342.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis N1568] gi|325130415|gb|EGC53179.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis OX99.30304] gi|325132458|gb|EGC55151.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis M6190] gi|325134417|gb|EGC57062.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis M13399] gi|325136150|gb|EGC58758.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis M0579] gi|325138232|gb|EGC60801.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis ES14902] gi|325140433|gb|EGC62954.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis CU385] gi|325142543|gb|EGC64943.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis 961-5945] gi|325144517|gb|EGC66816.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis M01-240013] gi|325198493|gb|ADY93949.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis G2136] gi|325200032|gb|ADY95487.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis H44/76] gi|325201943|gb|ADY97397.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis M01-240149] gi|325205885|gb|ADZ01338.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis M04-240196] gi|325208306|gb|ADZ03758.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis NZ-05/33] Length = 271 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+AL+ G E GL + + + ++ +LN++ A V Y + Sbjct: 138 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190 >gi|121635055|ref|YP_975300.1| SpoU methylase family protein [Neisseria meningitidis FAM18] gi|161870219|ref|YP_001599389.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442] gi|218768365|ref|YP_002342877.1| SpoU methylase family protein [Neisseria meningitidis Z2491] gi|120866761|emb|CAM10514.1| SpoU methylase family protein [Neisseria meningitidis FAM18] gi|121052373|emb|CAM08705.1| SpoU methylase family protein [Neisseria meningitidis Z2491] gi|161595772|gb|ABX73432.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442] Length = 292 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+AL+ G E GL + + + ++ +LN++ A V Y + Sbjct: 159 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 211 >gi|302336862|ref|YP_003802068.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM 11293] gi|301634047|gb|ADK79474.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM 11293] Length = 289 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 3/109 (2%) Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 A + I + + I PL + L++G Sbjct: 156 PRHPRAQRSAMGCVDIVPWCRSSFEEMQTHTTSNKIVALETGGCPLHEFHFPAGGILVIG 215 Query: 235 AEGKGLRPKTQETATSM---AHLHMPGIIKALNVSNAAAVALYITQNHF 280 +E G+ P E A+ + G +LNVS A + L+ + F Sbjct: 216 SEELGVSPALMEQASRSGGAVSIETGGRKGSLNVSVATGIVLHAWFSQF 264 >gi|241895544|ref|ZP_04782840.1| 23S rRNA methyltransferase [Weissella paramesenteroides ATCC 33313] gi|241871122|gb|EER74873.1| 23S rRNA methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 171 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%) Query: 217 KKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMP-GIIKALNVSNAAAVALY 274 + + + G E GL +E + I++LN+SN AA+ +Y Sbjct: 89 YHQADYTNTDHDYYFLFGKETTGLPEPFMKEHPDQALRIPQNDEHIRSLNLSNTAAIIIY 148 Query: 275 ITQNH 279 Sbjct: 149 EVLRQ 153 >gi|188533164|ref|YP_001906961.1| tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99] gi|188028206|emb|CAO96064.1| tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99] Length = 241 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 20/50 (40%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + + +LN++ A + Y + Sbjct: 108 PVALVFGRERVGLTNEELQKCHYHVAIAANPDYSSLNLAMAVQIIAYEVR 157 >gi|169334368|ref|ZP_02861561.1| hypothetical protein ANASTE_00767 [Anaerofustis stercorihominis DSM 17244] gi|169259085|gb|EDS73051.1| hypothetical protein ANASTE_00767 [Anaerofustis stercorihominis DSM 17244] Length = 155 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 3/66 (4%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHM--PGIIKALNVSNAAAVALYI 275 + + GAE KGL + ++ + M + LN+SN+ AV LY Sbjct: 85 NYTDFKFEENDYFMFGAETKGLPDYIHQKYPSTRLRIPMIPKENARCLNLSNSVAVLLYE 144 Query: 276 TQNHFA 281 Sbjct: 145 ALRQHN 150 >gi|186682631|ref|YP_001865827.1| RNA methyltransferase [Nostoc punctiforme PCC 73102] gi|186465083|gb|ACC80884.1| RNA methyltransferase, TrmH family, group 1 [Nostoc punctiforme PCC 73102] Length = 246 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 22/60 (36%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P E ALI G E +GL + A + ALN++ A A+ Y Sbjct: 100 PWLLEEPEKPTALIFGREDRGLSNEELNYAQRFVGIPTSKDYVALNLATAVAICCYELSQ 159 >gi|300717963|ref|YP_003742766.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661] gi|299063799|emb|CAX60919.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661] Length = 242 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 20/50 (40%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + + +LN++ A + Y + Sbjct: 108 PVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVR 157 >gi|224012188|ref|XP_002294747.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220969767|gb|EED88107.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 156 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALY 274 E A+++G EG G+ K + G +LNVS AA + L+ Sbjct: 89 EPFFTSAAIMMGNEGSGMSSKQMSLCDGFVRISQFGGGTASLNVSVAAGLVLH 141 >gi|21909807|ref|NP_664075.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS315] gi|28896500|ref|NP_802850.1| 23S rRNA methyltransferase [Streptococcus pyogenes SSI-1] gi|21903993|gb|AAM78878.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS315] gi|28811754|dbj|BAC64683.1| putative rRNA methylase [Streptococcus pyogenes SSI-1] Length = 182 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 3/155 (1%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D V+ ++ +VL P N G I R+ A + I P + + ++ + Sbjct: 11 DKVKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDK 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQ 245 + +L + + H + ++ D + G E GL + Sbjct: 71 LELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYAD-GDSHYFLFGREDTGLPEDFMR 129 Query: 246 ETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 E A + M +++LNVSN + +Y Sbjct: 130 EHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQ 164 >gi|260856626|ref|YP_003230517.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257755275|dbj|BAI26777.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368] gi|323156188|gb|EFZ42347.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli EPECa14] Length = 245 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 22/52 (42%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ AA V Y + Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAAQVIAYEVR 157 >gi|110803755|ref|YP_698630.1| rRNA methylase-like protein cspR [Clostridium perfringens SM101] gi|110684256|gb|ABG87626.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens SM101] Length = 153 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 4/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ V + I + L ++ + Sbjct: 1 MNLNIVLYQPEIPQNTGNIARTCVLTNSKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEI 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + D ++K + + ++ ++ ++ G E G+ A Sbjct: 61 HESYEDFMKKYGDKKIYLSTTHA--EDHYDEVKYEEEAFIMFGRESAGVPEDVH-NAHHG 117 Query: 252 AHLHMPGII-KALNVSNAAAVALYITQNHF 280 + M ++LN+SN A+ Y Sbjct: 118 IKVPMINTTTRSLNLSNTVAIIAYEALRQI 147 >gi|66817954|ref|XP_642670.1| hypothetical protein DDB_G0277479 [Dictyostelium discoideum AX4] gi|74876335|sp|Q76NT0|MRM1_DICDI RecName: Full=Mitochondrial rRNA methyltransferase; AltName: Full=Mitochondrial large ribosomal RNA ribose methylase gi|60470728|gb|EAL68702.1| hypothetical protein DDB_G0277479 [Dictyostelium discoideum AX4] Length = 531 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 7/154 (4%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L +VLD + DP N+GAI+R+ F+ DG++ + + S + +KS+SGA E Sbjct: 368 NNDKYPLWLVLDELWDPQNVGAIIRNCSFFNIDGVVISNKNSSPITPAASKSSSGACESF 427 Query: 188 PYIRISNLTDALQKMHSWGFQ------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 R ++ L+ G+ + + Q + LILG EG GL+ Sbjct: 428 VINRTESIEGFLKSSQRNGWNVVGTSLDDLNENQPCLDINQIKLDQPTILILGNEGFGLK 487 Query: 242 PKTQETATSMAHLHMPG-IIKALNVSNAAAVALY 274 P E + I +LNVS + + ++ Sbjct: 488 PSVLEICNKTIKIVGGNYKIDSLNVSVTSGILIH 521 >gi|149195840|ref|ZP_01872897.1| spoU protein [Lentisphaera araneosa HTCC2155] gi|149141302|gb|EDM29698.1| spoU protein [Lentisphaera araneosa HTCC2155] Length = 233 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 4/157 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + +VL+++ HN AILR+A AF I + + + ++ I Sbjct: 39 RTEHICLVLENLYQEHNASAILRNADAFGIQNINVIENDNDFAANKEVSMSAHKWLDIKA 98 Query: 190 IRISNLTDALQK----MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 S + + ++ L++ ++ IAL G E GL Sbjct: 99 WNESKIDNTVKCLSALKKQGYKICATSLRPESITLDELPVDEPIALCFGTELTGLSEVAH 158 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 E A M ++ M G I++ NVS A+A++L +N + Sbjct: 159 EMADYMTYIPMNGFIQSFNVSVASALSLSHLRNKMKR 195 >gi|170076970|ref|YP_001733608.1| rRNA methyltransferase [Synechococcus sp. PCC 7002] gi|169884639|gb|ACA98352.1| rRNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC 7002] Length = 250 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 21/58 (36%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + ALI G E GL A + + +LN++ A AV Y + Sbjct: 101 PWFLEDDQPSALIFGREDHGLSNSELNQAQRLVCIPTGDAYTSLNLAQAVAVCSYELR 158 >gi|91070320|gb|ABE11237.1| tRNA/rRNA methyltransferase [uncultured Prochlorococcus marinus clone HF10-88F10] Length = 90 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 17/35 (48%) Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M G++++LNVS AA++ L+ Sbjct: 1 MVDQSIFIPMRGMVQSLNVSVAASILLFEAVRQRK 35 >gi|220925797|ref|YP_002501099.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS 2060] gi|219950404|gb|ACL60796.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS 2060] Length = 272 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 87/235 (37%), Gaps = 8/235 (3%) Query: 45 QPENLFLYGVHTVSAALNNPS---RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101 + G V L +P R LLA + + A PV P + Sbjct: 29 RQGRFVAEGE-VVLRVLLSPRARFRPESILLAPERLPGLMPLLAASGTAAPVYVAPRPVM 87 Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + G +H+G+ P D LL+ L + + N+G + R+A AF Sbjct: 88 SALAGFP-IHRGVLAIGRGGPDPDPDALVPEGPALLLGLVGLANHDNVGGLFRNAAAFGA 146 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D +I + ++G +P+ R+ + L H G + L+ ++ Sbjct: 147 DAVILDAATCDPLYRKAIRVSAGTALTMPFGRVPDGEALLALCHRHGLVPVALTPAGEED 206 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + L+LG EG GL + + M + +LNV+ A AVAL+ Sbjct: 207 IAALPPLPRALLLLGTEGTGLPEALMARS-RRVRIAMAPGVDSLNVAAAGAVALH 260 >gi|325526741|gb|EGD04257.1| RNA methyltransferase [Burkholderia sp. TJI49] Length = 290 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 147 TGDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 198 >gi|206560519|ref|YP_002231284.1| putative tRNA/rRNA methyltransferase protein [Burkholderia cenocepacia J2315] gi|198036561|emb|CAR52458.1| putative tRNA/rRNA methyltransferase protein [Burkholderia cenocepacia J2315] Length = 244 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 102 TGDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 153 >gi|254247820|ref|ZP_04941141.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia PC184] gi|124872596|gb|EAY64312.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia PC184] Length = 289 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 147 TGDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 198 >gi|124022607|ref|YP_001016914.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9303] gi|123962893|gb|ABM77649.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9303] Length = 249 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 27/51 (52%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +AL+ G E +GL + + A + LH +LN+S+A A+ L+ Q Sbjct: 114 PVALVFGREDRGLTNEELQLAQRVITLHSSYGYPSLNLSHAVAIVLHELQR 164 >gi|78066859|ref|YP_369628.1| RNA methyltransferase TrmH, group 1 [Burkholderia sp. 383] gi|77967604|gb|ABB08984.1| RNA methyltransferase TrmH, group 1 [Burkholderia sp. 383] Length = 289 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 147 TGDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 198 >gi|107028736|ref|YP_625831.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia AU 1054] gi|116690105|ref|YP_835728.1| RNA methyltransferase [Burkholderia cenocepacia HI2424] gi|105897900|gb|ABF80858.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia AU 1054] gi|116648194|gb|ABK08835.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia cenocepacia HI2424] Length = 289 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 147 TGDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 198 >gi|183602741|ref|ZP_02964104.1| hypothetical protein BIFLAC_00880 [Bifidobacterium animalis subsp. lactis HN019] gi|219683159|ref|YP_002469542.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|241191493|ref|YP_002968887.1| hypothetical protein Balac_1478 [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196898|ref|YP_002970453.1| hypothetical protein Balat_1478 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183217979|gb|EDT88627.1| hypothetical protein BIFLAC_00880 [Bifidobacterium animalis subsp. lactis HN019] gi|219620809|gb|ACL28966.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|240249885|gb|ACS46825.1| hypothetical protein Balac_1478 [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251452|gb|ACS48391.1| hypothetical protein Balat_1478 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177618|gb|ADC84864.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis BB-12] gi|295794485|gb|ADG34020.1| hypothetical protein BalV_1432 [Bifidobacterium animalis subsp. lactis V9] Length = 269 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+E ++ L+ GAEG GL K E A + ++ G ++++N AAAV ++ Sbjct: 204 PMETYRFPERCLLLFGAEGPGLSKKALELADDVVYISQFGSVRSINAGAAAAVTMHAWIA 263 Query: 279 H 279 Sbjct: 264 Q 264 >gi|182626609|ref|ZP_02954355.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens D str. JGS1721] gi|177908089|gb|EDT70662.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens D str. JGS1721] Length = 153 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ V + I + L ++ + Sbjct: 1 MNLNIVLYQPEIPQNTGNIARTCVLTNSKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEI 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + D ++K + + ++ + ++ G E G+ A Sbjct: 61 HESYEDFMKKYGDKKIYLSTTHA--EDHYDEVKYEEGAFIMFGRESAGVPENVH-NAHHG 117 Query: 252 AHLHMPGII-KALNVSNAAAVALYITQNHF 280 + M ++LN+SN A+ Y Sbjct: 118 IKVPMINTTTRSLNLSNTVAIIAYEALRQI 147 >gi|255083500|ref|XP_002504736.1| predicted protein [Micromonas sp. RCC299] gi|226520004|gb|ACO65994.1| predicted protein [Micromonas sp. RCC299] Length = 369 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 31/75 (41%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + K ++ K+AL+ G E GL + + + +I++L+VS Sbjct: 263 HGWKRRVYNPKNRNQKNRGRGKLALVFGREVDGLTDEEVNLCDAACRIPTGRLIESLSVS 322 Query: 267 NAAAVALYITQNHFA 281 +AA + L H A Sbjct: 323 HAAVIILSQYYQHRA 337 >gi|261345350|ref|ZP_05972994.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia rustigianii DSM 4541] gi|282566393|gb|EFB71928.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia rustigianii DSM 4541] Length = 243 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 21/50 (42%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A+I G E GL + + ++ +LN++ A + Y + Sbjct: 108 PVAIIFGRERVGLTNEELQKCNYHLYIPTNPEYGSLNLAMAVQLVSYEIR 157 >gi|325204341|gb|ADY99794.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis M01-240355] Length = 271 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+AL+ G E GL + + + ++ +LN++ A V Y + Sbjct: 138 EKVALVFGNETFGLSIEEAQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190 >gi|299067213|emb|CBJ38410.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum CMR15] Length = 259 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL + E + H+ +LN+S A + Y + Sbjct: 110 VAFVFGNERYGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVR 158 >gi|182682100|ref|YP_001830260.1| RNA methyltransferase [Xylella fastidiosa M23] gi|182632210|gb|ACB92986.1| RNA methyltransferase, TrmH family, group 1 [Xylella fastidiosa M23] gi|307578367|gb|ADN62336.1| tRNA/rRNA methyltransferase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 263 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ + +LN++ A + Y + Sbjct: 123 VALLFGRERTGLTNEELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIR 171 >gi|15839065|ref|NP_299753.1| tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c] gi|9107672|gb|AAF85273.1|AE004055_11 tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c] Length = 281 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ + +LN++ A + Y + Sbjct: 141 VALLFGRERTGLTNEELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIR 189 >gi|28199373|ref|NP_779687.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1] gi|28057479|gb|AAO29336.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1] Length = 252 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ + +LN++ A + Y + Sbjct: 112 VALLFGRERTGLTNEELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIR 160 >gi|17545880|ref|NP_519282.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000] gi|17428175|emb|CAD14863.1| putative trna/rrna methyltransferase protein [Ralstonia solanacearum GMI1000] Length = 287 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL + E + H+ +LN+S A + Y + Sbjct: 138 VAFVFGNERYGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVR 186 >gi|71898718|ref|ZP_00680887.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1] gi|71731483|gb|EAO33545.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1] Length = 263 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ + +LN++ A + Y + Sbjct: 123 VALLFGRERTGLTNEELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIR 171 >gi|71276243|ref|ZP_00652522.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Dixon] gi|71900996|ref|ZP_00683108.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1] gi|170730741|ref|YP_001776174.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12] gi|71163004|gb|EAO12727.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Dixon] gi|71729247|gb|EAO31366.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1] gi|167965534|gb|ACA12544.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12] Length = 263 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + H+ + +LN++ A + Y + Sbjct: 123 VALLFGRERTGLTNEELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIR 171 >gi|88703677|ref|ZP_01101393.1| RNA methyltransferase TrmH, group 1 [Congregibacter litoralis KT71] gi|88702391|gb|EAQ99494.1| RNA methyltransferase TrmH, group 1 [Congregibacter litoralis KT71] Length = 254 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 18/48 (37%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +A++ G E GL + + +LN++ A + Y Sbjct: 110 VAILFGREDNGLSNEELMRCNLHLAIPTSDAYSSLNLAMAVQIVCYEL 157 >gi|240125860|ref|ZP_04738746.1| putative methylase family protein [Neisseria gonorrhoeae SK-92-679] gi|268684458|ref|ZP_06151320.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|268624742|gb|EEZ57142.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-92-679] Length = 271 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+AL+ G E GL + + ++ +LN++ A V Y + Sbjct: 138 EKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190 >gi|240113067|ref|ZP_04727557.1| putative methylase family protein [Neisseria gonorrhoeae MS11] gi|240128370|ref|ZP_04741031.1| putative methylase family protein [Neisseria gonorrhoeae SK-93-1035] gi|268599153|ref|ZP_06133320.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae MS11] gi|268686768|ref|ZP_06153630.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|268583284|gb|EEZ47960.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae MS11] gi|268627052|gb|EEZ59452.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] Length = 271 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+AL+ G E GL + + ++ +LN++ A V Y + Sbjct: 138 EKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190 >gi|254441248|ref|ZP_05054741.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307] gi|198251326|gb|EDY75641.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307] Length = 157 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 52/153 (33%), Gaps = 4/153 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + + ++ +VL P+N GAI R+ VA + I+ + + ++ +H+ Sbjct: 1 MSDPRMKLVLVTPEIPYNTGAIGRTCVALELELILIKPYGFSLDEKAVRRAGQDYWKHVQ 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + + + L+ G E KGL Sbjct: 61 LCEYDTWQGFMDDRNPPRDSLYFFEEHGAQSVYAPDYQHDAYLVFGCESKGLPATVLNGM 120 Query: 249 TSMA-HLHMPGI-IKALNVS-NAAAVALYITQN 278 HL M +++LN++ A AV Y Sbjct: 121 DDRVFHLPMRNPLVRSLNLANVATAVI-YQAMR 152 >gi|59801097|ref|YP_207809.1| putative methylase family protein [Neisseria gonorrhoeae FA 1090] gi|194098799|ref|YP_002001862.1| putative methylase family protein [Neisseria gonorrhoeae NCCP11945] gi|239999090|ref|ZP_04719014.1| putative methylase family protein [Neisseria gonorrhoeae 35/02] gi|240014003|ref|ZP_04720916.1| putative methylase family protein [Neisseria gonorrhoeae DGI18] gi|240016444|ref|ZP_04722984.1| putative methylase family protein [Neisseria gonorrhoeae FA6140] gi|240080563|ref|ZP_04725106.1| putative methylase family protein [Neisseria gonorrhoeae FA19] gi|240115823|ref|ZP_04729885.1| putative methylase family protein [Neisseria gonorrhoeae PID18] gi|240118121|ref|ZP_04732183.1| putative methylase family protein [Neisseria gonorrhoeae PID1] gi|240121569|ref|ZP_04734531.1| putative methylase family protein [Neisseria gonorrhoeae PID24-1] gi|240123670|ref|ZP_04736626.1| putative methylase family protein [Neisseria gonorrhoeae PID332] gi|254493868|ref|ZP_05107039.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 1291] gi|260440361|ref|ZP_05794177.1| putative methylase family protein [Neisseria gonorrhoeae DGI2] gi|268594928|ref|ZP_06129095.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268596693|ref|ZP_06130860.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268601499|ref|ZP_06135666.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID18] gi|268603837|ref|ZP_06138004.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID1] gi|268682301|ref|ZP_06149163.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID332] gi|291043656|ref|ZP_06569372.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae DGI2] gi|293398959|ref|ZP_06643124.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae F62] gi|59717992|gb|AAW89397.1| putative methylase family protein [Neisseria gonorrhoeae FA 1090] gi|193934089|gb|ACF29913.1| putative methylase family protein [Neisseria gonorrhoeae NCCP11945] gi|226512908|gb|EEH62253.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 1291] gi|268548317|gb|EEZ43735.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268550481|gb|EEZ45500.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268585630|gb|EEZ50306.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID18] gi|268587968|gb|EEZ52644.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID1] gi|268622585|gb|EEZ54985.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID332] gi|291012119|gb|EFE04108.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae DGI2] gi|291610373|gb|EFF39483.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae F62] gi|317164381|gb|ADV07922.1| putative methylase family protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 271 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+AL+ G E GL + + ++ +LN++ A V Y + Sbjct: 138 EKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190 >gi|290476021|ref|YP_003468918.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus bovienii SS-2004] gi|289175351|emb|CBJ82154.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus bovienii SS-2004] Length = 244 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 27/70 (38%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + + + +A++ G E GL + + ++ +LN++ Sbjct: 88 WPMVEPRECGERCIKAAGHSPVAVVFGRERVGLTNEELQKCNYHLYIPTNPEYGSLNLAM 147 Query: 268 AAAVALYITQ 277 A +A Y + Sbjct: 148 AVQLASYEIR 157 >gi|302531148|ref|ZP_07283490.1| RNA methyltransferase [Streptomyces sp. AA4] gi|302440043|gb|EFL11859.1| RNA methyltransferase [Streptomyces sp. AA4] Length = 219 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 21/55 (38%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G EG GL Q + + + G +++N AA + ++ Sbjct: 157 LPRNCLLLFGQEGPGLSEAAQTDSAKVVSIAQFGTTRSINAGVAAGIVMHAWIRQ 211 >gi|33240425|ref|NP_875367.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237952|gb|AAQ00020.1| Predicted rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 166 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 10/157 (6%) Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 +D ++L + L P N G I R+ +AF D + + L ++ + Sbjct: 1 MDKKIINKLSIALYEPRIPQNTGNIGRTCLAFDFDLHLILPLGFEINNKRLKRAGLDYWK 60 Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 +I + + ++ +L+ G E GL + Sbjct: 61 YINLELHESFAHYSKFINPSRIIGFSKEGGIPLSK--IEFQSNDSLLFGREDLGLPSHVK 118 Query: 246 ETATSMAHLHMPGI--------IKALNVSNAAAVALY 274 MA + MPG +++LN+S A +A + Sbjct: 119 NKCDFMATIPMPGKSNSKNDNGVRSLNLSVACGIASF 155 >gi|311113957|ref|YP_003985178.1| SpoU rRNA methylase [Gardnerella vaginalis ATCC 14019] gi|310945451|gb|ADP38155.1| SpoU rRNA methylase [Gardnerella vaginalis ATCC 14019] Length = 99 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +E + ++ GAEG GL K + A + ++ G +++LN AAAV+++ Sbjct: 34 METYKFPKRCLMLFGAEGPGLSKKALKMADDVVYISQFGSVRSLNAGAAAAVSMHAWIAQ 93 >gi|296167821|ref|ZP_06850006.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897019|gb|EFG76640.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 218 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+ G EG G+ + A + G +++N AA +A++ Sbjct: 156 LPRECLLVFGQEGPGITDDVRSGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 210 >gi|256828255|ref|YP_003156983.1| RNA methyltransferase, TrmH family, group 1 [Desulfomicrobium baculatum DSM 4028] gi|256577431|gb|ACU88567.1| RNA methyltransferase, TrmH family, group 1 [Desulfomicrobium baculatum DSM 4028] Length = 248 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFAK 282 K+A++ G E KGL + + + + + +LN+S A V LY + AK Sbjct: 110 KVAIVFGPEDKGLTNEETDLCNQLLTIPTTDNLTSLNLSQAVMVVLYECFKKSLAK 165 >gi|111022496|ref|YP_705468.1| RNA methyltransferase [Rhodococcus jostii RHA1] gi|110822026|gb|ABG97310.1| probable RNA methyltransferase [Rhodococcus jostii RHA1] Length = 230 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G EG G+ + ++ A + G +++N AA +A++ Sbjct: 168 LPRDCVLLFGQEGPGVTDQAKKVAAMTVSIAQFGSTRSINAGVAAGIAMHAWVRQ 222 >gi|328791993|ref|XP_001123107.2| PREDICTED: hypothetical protein LOC727398 [Apis mellifera] Length = 1348 Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K L+LG E G+ + + G+I++LNV + A+ ++ Sbjct: 1287 NMKFEKKTILVLGNEKNGIPANLIPLFDTCIEIPQAGVIRSLNVHVSGAICIWQYAKQ 1344 >gi|317484738|ref|ZP_07943638.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6] gi|316923990|gb|EFV45176.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6] Length = 257 Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++A++ G E +GL E + + G +LN++ A + Y Sbjct: 118 RVAIVFGCEDRGLSNADIEQCQRLVTIPTAGEASSLNLAQAILILTYECMK 168 >gi|317049146|ref|YP_004116794.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b] gi|316950763|gb|ADU70238.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. At-9b] Length = 247 Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 20/50 (40%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + + +LN++ A + Y + Sbjct: 108 PVALVFGRERVGLTNEELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVR 157 >gi|219117827|ref|XP_002179701.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408754|gb|EEC48687.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 169 Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALY 274 A ++G EG+G+ K ++ + + G +LNV AA++ L+ Sbjct: 105 KDTAFLMGNEGQGINEKHMKSCDAFVTIPQYGGGTASLNVYVAASIVLH 153 >gi|284006760|emb|CBA72018.1| hypothetical tRNA/rRNA methyltransferase [Arsenophonus nasoniae] Length = 242 Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 25/70 (35%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + N +A+I G E GL + + H+ +LN++ Sbjct: 88 WPQVTPRECGEKTIHQAINSPVAIIFGRERVGLTNEELQKCQYHLHIPTNPEYGSLNLAM 147 Query: 268 AAAVALYITQ 277 A + Y + Sbjct: 148 AVQLISYEIR 157 >gi|78484960|ref|YP_390885.1| RNA methyltransferase TrmH, group 1 [Thiomicrospira crunogena XCL-2] gi|78363246|gb|ABB41211.1| RNA methyltransferase, TrmH family, group 1 [Thiomicrospira crunogena XCL-2] Length = 268 Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +A++ G E GL + +AH+ +LN++ A V +Y Sbjct: 122 VAILFGREDSGLSNAELDKCHYLAHIPTNPTYSSLNIAAAVQVFVYEL 169 >gi|184199838|ref|YP_001854045.1| RNA methyltransferase [Kocuria rhizophila DC2201] gi|183580068|dbj|BAG28539.1| putative RNA methyltransferase [Kocuria rhizophila DC2201] Length = 239 Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ L+ G EG G+ + A ++ + G +++N AAAV ++ Sbjct: 164 FDLPERCVLVFGQEGPGVSGELVAQADAVLAIEQFGSTRSINAGAAAAVTMHAWIRR 220 >gi|312214449|emb|CBX94441.1| hypothetical protein [Leptosphaeria maculans] Length = 584 Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-----IIKALNVSNAAAVALYI 275 + L++GAE GL+ A + + +LNVS AA++ Y Sbjct: 507 HCPVVEHPTILMMGAESSGLQKSLLRLAHYNVGIPHGRDVNEVGVDSLNVSVAASLLCYE 566 Query: 276 TQNH 279 Sbjct: 567 MLQR 570 >gi|257093601|ref|YP_003167242.1| TrmH family RNA methyltransferase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046125|gb|ACV35313.1| RNA methyltransferase, TrmH family, group 1 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 265 Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 19/49 (38%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A + Y + Sbjct: 121 VALLFGNETAGLSNAEVQRCRQTVFIPADPGYTSLNLAAAVQLLCYELR 169 >gi|152984133|ref|YP_001346680.1| putative methyltransferase [Pseudomonas aeruginosa PA7] gi|150959291|gb|ABR81316.1| probable methyltransferase [Pseudomonas aeruginosa PA7] Length = 308 Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 27/72 (37%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + + LE N + AL+ G E GL + + H+ +LN+ Sbjct: 138 PWPLLDPRECAATCLEHLEANGEAALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNL 197 Query: 266 SNAAAVALYITQ 277 + A V Y + Sbjct: 198 AAAVQVLTYEVR 209 >gi|260903728|ref|ZP_05912050.1| tRNA/rRNA methyltransferase (SpoU) [Brevibacterium linens BL2] Length = 154 Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 2/97 (2%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 H + + H + I ++ + + + D L+ G E GL Sbjct: 52 YHDLAHVTVHASLTDLWNHLGERRVIAFTTHTDQSFAEVDYRDGDVLLFGQESTGLPDSV 111 Query: 245 QETATSMA--HLHMPGIIKALNVSNAAAVALYITQNH 279 + + M ++LN++N+A++A+Y Sbjct: 112 VDDDHVDLSVRIPMLPSRRSLNLANSASIAIYEAWRQ 148 >gi|162454190|ref|YP_001616557.1| SpoU rRNA methylase family protein [Sorangium cellulosum 'So ce 56'] gi|161164772|emb|CAN96077.1| SpoU rRNA methylase family protein [Sorangium cellulosum 'So ce 56'] Length = 175 Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 21/60 (35%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + G+E GL + + + M GI + V+ AA + L Sbjct: 105 WEAPFPRGLVFLFGSEDDGLPQALLDACEDVIAIPMYGINHSYPVAIAAGMTLCEWARRR 164 >gi|148239933|ref|YP_001225320.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803] gi|147848472|emb|CAK24023.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803] Length = 229 Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 26/53 (49%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +AL+ G E +GL + + + LH +LN+S+A A+ L+ Q Sbjct: 94 VALVFGREDRGLSNEELLLSHRVVRLHTVDHYPSLNLSHAVAIVLHDLQRSRI 146 >gi|225076736|ref|ZP_03719935.1| hypothetical protein NEIFLAOT_01787 [Neisseria flavescens NRL30031/H210] gi|224951934|gb|EEG33143.1| hypothetical protein NEIFLAOT_01787 [Neisseria flavescens NRL30031/H210] Length = 304 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+AL+ G E GL + + + ++ +LN++ A V Y + Sbjct: 171 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 223 >gi|71907312|ref|YP_284899.1| RNA methyltransferase TrmH, group 1 [Dechloromonas aromatica RCB] gi|71846933|gb|AAZ46429.1| RNA methyltransferase TrmH, group 1 [Dechloromonas aromatica RCB] Length = 254 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + + +LN+ +A V Y + Sbjct: 115 VALVFGNETVGLTNEEILHCQAAVTIPTNPDFSSLNLGSAVQVLCYECR 163 >gi|261403375|ref|YP_003247599.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus vulcanius M7] gi|261370368|gb|ACX73117.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus vulcanius M7] Length = 227 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 22/51 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + ++ G E GL + E + + + +N+S+A AV LY Sbjct: 105 GNVGIVFGREDDGLTNEELEKCDLLVSIPTSNLYPIMNLSHAVAVILYEIY 155 >gi|15674520|ref|NP_268694.1| 23S rRNA methyltransferase [Streptococcus pyogenes M1 GAS] gi|71910126|ref|YP_281676.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005] gi|139474353|ref|YP_001129069.1| 23S rRNA methyltransferase [Streptococcus pyogenes str. Manfredo] gi|209558867|ref|YP_002285339.1| Putative rRNA methylase [Streptococcus pyogenes NZ131] gi|313471792|sp|Q48V41|TRML_STRPM RecName: Full=Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase M28_Spy0301 gi|13621623|gb|AAK33415.1| putative rRNA methylase [Streptococcus pyogenes M1 GAS] gi|71852908|gb|AAZ50931.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005] gi|134272600|emb|CAM30867.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str. Manfredo] gi|209540068|gb|ACI60644.1| Putative rRNA methylase [Streptococcus pyogenes NZ131] Length = 182 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 3/155 (1%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D V+ ++ +VL P N G I R+ A + I P + + ++ + Sbjct: 11 DKVKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDK 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQ 245 + +L + + H + ++ D + G E GL + Sbjct: 71 LELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYAD-GDSHYFLFGREDTGLPEDFMR 129 Query: 246 ETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 E A + M +++LNVSN + +Y Sbjct: 130 EHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQ 164 >gi|212715379|ref|ZP_03323507.1| hypothetical protein BIFCAT_00274 [Bifidobacterium catenulatum DSM 16992] gi|212661685|gb|EEB22260.1| hypothetical protein BIFCAT_00274 [Bifidobacterium catenulatum DSM 16992] Length = 227 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+E + ++ GAEG GL K E A + ++ G ++++N AAAV+++ Sbjct: 161 PMETYCFPKRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMHAWIA 220 Query: 279 H 279 Sbjct: 221 Q 221 >gi|145350134|ref|XP_001419472.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579704|gb|ABO97765.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 183 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 49/159 (30%), Gaps = 8/159 (5%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + L +VL P N G I R+ A + + A L ++ + + Sbjct: 17 QRKDLHVVLVTPKIPGNTGCIARTCAASRVPLHLVAPLGFSLDDAQLKRAGLDYWKSVCV 76 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI----KNDKIALILGAEGKGLRPKTQ 245 + G + L + SK L+ GAE GL Sbjct: 77 KVHDDWDAFYAYWRELGDERGRLVAFSKFGARPHAEDGAYRPGDWLLFGAETTGLPDAAM 136 Query: 246 ETATSM--AH-LHMPG-IIKALNVSNAAAVALYITQNHF 280 E + + + +++LN+S + + +Y Sbjct: 137 EACKATGGVRRIPIDESHVRSLNLSVSCGIGVYEALRQL 175 >gi|288575566|ref|ZP_05977206.2| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996] gi|288567580|gb|EFC89140.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996] Length = 134 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + G E +GL + +T L M +++N+SN AV L+ Sbjct: 71 FVEGDVFLFGPETRGLPAEILDTLPEGQKLRLPMKLGSRSMNLSNTVAVILFEAWRQ 127 >gi|156547687|ref|XP_001604773.1| PREDICTED: similar to TAR RNA loop binding protein [Nasonia vitripennis] Length = 1450 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+LG E G+ + G+I++LNV +A+ ++ Sbjct: 1391 YPKQTVLVLGNEKNGIPANIIPLLDMCVEISQFGVIRSLNVHVTSAICIWEYVKQ 1445 >gi|242240171|ref|YP_002988352.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii Ech703] gi|242132228|gb|ACS86530.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii Ech703] Length = 244 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + +LN++ A + Y + Sbjct: 108 PVAIVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQLLSYEIR 157 >gi|241758643|ref|ZP_04756757.1| SpoU methylase family protein [Neisseria flavescens SK114] gi|241321154|gb|EER57350.1| SpoU methylase family protein [Neisseria flavescens SK114] Length = 295 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+AL+ G E GL + + + ++ +LN++ A V Y + Sbjct: 162 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 214 >gi|148241831|ref|YP_001226988.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307] gi|147850141|emb|CAK27635.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307] Length = 248 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +AL+ G E GL A + + +LN+S+A A+ L Q Sbjct: 108 PNHVALVFGREDHGLHSSELNLAGKLLRIPTSEAYGSLNLSHAVAICLAEHQR 160 >gi|269965158|ref|ZP_06179292.1| RNA methyltransferase, TrmH family [Vibrio alginolyticus 40B] gi|269830144|gb|EEZ84371.1| RNA methyltransferase, TrmH family [Vibrio alginolyticus 40B] Length = 239 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 24/70 (34%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + E + +AL+ G E GL + + + +LN++ Sbjct: 88 WPMLEPRECGEKFAVEGRKHPVALVFGRERTGLTNEELQKCHYHVCIPANPEYSSLNLAM 147 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 148 AVQTLSYEVR 157 >gi|86145581|ref|ZP_01063911.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222] gi|85836552|gb|EAQ54678.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222] Length = 242 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 23/70 (32%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + E + +AL+ G E GL + + +LN++ Sbjct: 88 WPMLEPRECGQKFAVEGQKHPVALVFGRERTGLTNDELQKCHFHVCIPANPEYSSLNLAM 147 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 148 AVQTLSYEVR 157 >gi|84387612|ref|ZP_00990629.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01] gi|218708627|ref|YP_002416248.1| RNA methyltransferase, TrmH family [Vibrio splendidus LGP32] gi|84377457|gb|EAP94323.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01] gi|218321646|emb|CAV17598.1| RNA methyltransferase, TrmH family [Vibrio splendidus LGP32] Length = 242 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 23/70 (32%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + E + +AL+ G E GL + + +LN++ Sbjct: 88 WPMLEPRECGQKFAVEGQKHPVALVFGRERTGLTNDELQKCHFHVCIPANPEYSSLNLAM 147 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 148 AVQTLSYEVR 157 >gi|290958962|ref|YP_003490144.1| rRNA methylase [Streptomyces scabiei 87.22] gi|260648488|emb|CBG71599.1| putative rRNA methylase [Streptomyces scabiei 87.22] Length = 256 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 22/51 (43%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 D L G+E GL + A + L M + + N++ + A+ LY Sbjct: 200 LPDDAVLAFGSERSGLSAGLRARADHLLSLPMRPQVSSYNLATSVAMTLYH 250 >gi|38234645|ref|NP_940412.1| putative RNA methylase family protein [Corynebacterium diphtheriae NCTC 13129] gi|38200909|emb|CAE50624.1| Putative RNA methylase family protein [Corynebacterium diphtheriae] Length = 172 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 4/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + +++ + NIG ++R+A AF+ D + R + + L H P Sbjct: 19 RRHCLHIAIENFENDANIGTVVRTANAFAVDTVHIVGRKRWNRRGAMVTDRYQHLMHHPT 78 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 Q + + ++ L+ G EG G+ + Q+ A Sbjct: 79 TADVVAWAKQQGLTIVAIDNTPGCVPLET----AELPERCLLLFGQEGPGVTQEAQDNAR 134 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G +++N AA +A++ Sbjct: 135 MTCSIAQFGSTRSINAGVAAGIAMHAWIRQ 164 >gi|318057501|ref|ZP_07976224.1| rRNA methylase [Streptomyces sp. SA3_actG] gi|318080806|ref|ZP_07988138.1| rRNA methylase [Streptomyces sp. SA3_actF] Length = 266 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 71/229 (31%), Gaps = 11/229 (4%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVG 106 + L G H + AL + + + A L + +L VP Sbjct: 39 VLLDGFHALKHALRFGADVPLAVAEDRAAALALADELAPDLAPRLAELLVPVPPALYRSL 98 Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 H A A + L+VLD + N GA++R A F G++TT Sbjct: 99 VPRPHPTGVAALAGRPPAPGFAGPRTSPLLVLDEPRNLGNAGAVIRLAAGFGASGVVTTG 158 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 A+ A + + + + L Sbjct: 159 DLDLWHP---------AVVRAGAGLHFATPVARRAVPELPAGPLWAFDAEGEDLRGVRVP 209 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 D L G+E GL +E A + L M + + N++ + +ALY Sbjct: 210 DDALLAFGSERHGLTAAVRERADRLVALPMRPHVSSYNLATSVGMALYH 258 >gi|254228672|ref|ZP_04922096.1| rRNA methylase [Vibrio sp. Ex25] gi|262395131|ref|YP_003286985.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. Ex25] gi|151938851|gb|EDN57685.1| rRNA methylase [Vibrio sp. Ex25] gi|262338725|gb|ACY52520.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. Ex25] Length = 239 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 24/70 (34%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + E + +AL+ G E GL + + + +LN++ Sbjct: 88 WPMLEPRECGEKFAVEGRKHPVALVFGRERTGLTNEELQRCHYHVCIPANPEYSSLNLAM 147 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 148 AVQTLSYEVR 157 >gi|19745529|ref|NP_606665.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS8232] gi|19747648|gb|AAL97164.1| putative rRNA methylase [Streptococcus pyogenes MGAS8232] Length = 182 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 3/155 (1%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D ++ ++ +VL P N G I R+ A + I P + + ++ + Sbjct: 11 DKLKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDK 70 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQ 245 + +L + + H + ++ D + G E GL + Sbjct: 71 LELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYAD-GDSHYFLFGREDTGLPEDFMR 129 Query: 246 ETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 E A + M +++LNVSN + +Y Sbjct: 130 EHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQ 164 >gi|256545227|ref|ZP_05472592.1| TrmH family RNA methyltransferase [Anaerococcus vaginalis ATCC 51170] gi|256399054|gb|EEU12666.1| TrmH family RNA methyltransferase [Anaerococcus vaginalis ATCC 51170] Length = 156 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQETA-TSMAHLHMPGIIK-ALNVSNAAAVALYITQNH 279 D LI G E +G+ K E + + M + +LN++N+ A+ LY Sbjct: 91 YKDGDYLIFGREKEGIDKKIIEKFKDRVYTIPMTKNMDRSLNLANSVAIVLYEGLRQ 147 >gi|326692551|ref|ZP_08229556.1| rRNA methylase (SpoU class) [Leuconostoc argentinum KCTC 3773] Length = 170 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 46/152 (30%), Gaps = 4/152 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + + ++ EH+ ++ Sbjct: 1 MTNHIVLFEPVMPANTGNIARTTAGTDAVLHLIEPLGFELDDKHVKRAGLDYWEHVQLVK 60 Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248 + + ++ + + + + G E GL ++ Sbjct: 61 HDSLPDFLDTLRETDHLYLVSKFANYDYTQPDYSVTDGDHYFLFGKETTGLPEVFMRQNP 120 Query: 249 TSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279 + I++LN+SN A+ LY Sbjct: 121 DKAIRIPQDDTHIRSLNLSNTVAIVLYEALRQ 152 >gi|325684149|gb|EGD26344.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 291 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 88/278 (31%), Gaps = 24/278 (8%) Query: 1 MNLISKKKS-EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59 M+ I ++ + +I + D + + + + Sbjct: 1 MDRIDRENNLIRINAFDDPRLK-------LFTDYNEAQLFHYYEPEAGIFIAESPKVIER 53 Query: 60 ALNNPSRKIFQLLATK-------NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112 A+ I L+ K + L + + FP+ + + G + Sbjct: 54 AIRAGYEPIAMLVEGKALERDLADFDRELAANHDHLLDFPIFVAQSDLLRHLPGYNLLRG 113 Query: 113 GLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 + + + VL+ V +P N+GAI RSA A DG++ T S Sbjct: 114 AICAFRRKKRPSLREFAAALPKHARVGVLESVVNPTNVGAIFRSAAALGMDGVLITTDSS 173 Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDAL------QKMHSWGFQTIGLSSDSKKPLEQE 223 + + G + +P+ + Q++ + Sbjct: 174 DPLYRRSGRVSMGTVFQVPWTYLDQKLWREKGVASLQELGFKTAAMALRDNTVDIDDPVL 233 Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + D++A+ILG+EG GL P+T + + M + Sbjct: 234 KEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVD 271 >gi|321463166|gb|EFX74184.1| hypothetical protein DAPPUDRAFT_307431 [Daphnia pulex] Length = 476 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 4/52 (7%) Query: 231 LILGAEGKGLRPKTQETATS----MAHLHMPGIIKALNVSNAAAVALYITQN 278 L++G E GL + A + + + +LN A + Y + Sbjct: 412 LVIGGETHGLSSAAHKLAHEYGGLKVFIPLENKVDSLNAGVAVGILAYEFRR 463 Score = 43.7 bits (101), Expect = 0.033, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 3/149 (2%) Query: 38 QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97 + SR + L G ++ A+N + + L L + V Sbjct: 159 KSSRARKASGKILLEGERLIADAMNAGAYAETIFFSDTKLLTTLP--LKKYPSIQLYQVQ 216 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 I ++ G+ D + L ++ D++ DP N+G I+R A A Sbjct: 217 YGKI-QLWSDLTTSPGIMGIFDVTKPTNSDIPHHIPLTIICDNIRDPGNMGTIIRCAAAV 275 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEH 186 C +ITT + + ++A+GA Sbjct: 276 GCKALITTPDCVDVWDSKVLRAAAGAHFR 304 >gi|224076560|ref|XP_002196211.1| PREDICTED: similar to MGC84529 protein [Taeniopygia guttata] Length = 323 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 4/67 (5%) Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSNAAAVAL 273 + ++ +A+++G E GL P A + + + +LN + AA + L Sbjct: 25 QHYYEDWARAPVAVVVGGETHGLSPAALGLAASTGGKRLLIPVVPGVDSLNSAIAAGIVL 84 Query: 274 YITQNHF 280 + + Sbjct: 85 FEGKRQL 91 Score = 55.6 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 2/174 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R D +K+ + + + + L G + AL + +T L L Sbjct: 94 RHKQEDGRKVVTIAKSKKFRDNHGKVLLEGHRLIKDALEAGAVPQTLFFSTVGHLKLLPE 153 Query: 84 -DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHV 141 + VK +T +V + + + + P + LL++ D++ Sbjct: 154 AEIKRASLVKVKFEDIKTWSDLVTPQGLLGIFSKPDPAKMSYPAAQLANSLPLLLICDNI 213 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 DP N+G ILRSA C+ ++ TK + ++ GA +P I + Sbjct: 214 RDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVLRAGMGAHFRVPIIANLDW 267 >gi|221198388|ref|ZP_03571434.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia multivorans CGD2M] gi|221208935|ref|ZP_03581932.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia multivorans CGD2] gi|221171218|gb|EEE03668.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia multivorans CGD2] gi|221182320|gb|EEE14721.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia multivorans CGD2M] Length = 274 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 132 SGDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 183 >gi|221214723|ref|ZP_03587692.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia multivorans CGD1] gi|221165262|gb|EED97739.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia multivorans CGD1] Length = 274 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 132 SGDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 183 >gi|218548031|ref|YP_002381822.1| methyltransferase [Escherichia fergusonii ATCC 35469] gi|218355572|emb|CAQ88184.1| putative methyltransferase [Escherichia fergusonii ATCC 35469] Length = 246 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAITANPEYSSLNLAMAVQVIAYEVR 157 >gi|189350875|ref|YP_001946503.1| tRNA/rRNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|189334897|dbj|BAG43967.1| tRNA/rRNA methyltransferase [Burkholderia multivorans ATCC 17616] Length = 276 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 134 SGDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 185 >gi|161524370|ref|YP_001579382.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|160341799|gb|ABX14885.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia multivorans ATCC 17616] Length = 289 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 147 SGDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 198 >gi|331700240|ref|YP_004336479.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans CB1190] gi|326954929|gb|AEA28626.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans CB1190] Length = 228 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 23/54 (42%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L+ G EG GL + +A + + G +++N AA + ++ Sbjct: 166 LPRRCVLLFGQEGPGLTDTARASAARLVSIAQFGSTRSINAGVAAGIVMHAWVR 219 >gi|303277263|ref|XP_003057925.1| RNA methyltransferase [Micromonas pusilla CCMP1545] gi|226460582|gb|EEH57876.1| RNA methyltransferase [Micromonas pusilla CCMP1545] Length = 1938 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K AL+LG E +G+ + G+I++LNV +A++A++ Sbjct: 1880 FQFPKKTALVLGREREGVDADLLSLLDECVVIKQVGLIRSLNVHVSASIAIHAYAAQ 1936 >gi|284799663|ref|ZP_05984511.2| RNA methyltransferase, TrmH family, group 1 [Neisseria subflava NJ9703] gi|284797648|gb|EFC52995.1| RNA methyltransferase, TrmH family, group 1 [Neisseria subflava NJ9703] Length = 304 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+AL+ G E GL + + + ++ +LN++ A V Y + Sbjct: 171 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 223 >gi|170699309|ref|ZP_02890358.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria IOP40-10] gi|170135801|gb|EDT04080.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria IOP40-10] Length = 273 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 133 GDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 183 >gi|149923142|ref|ZP_01911556.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1] gi|149815980|gb|EDM75495.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1] Length = 213 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 I L+LG E G+ P+ +A + M GI +LNVS A AVA Y + Sbjct: 161 IVLVLGHEVSGVDPRILAHCERVARIPMAGIKGSLNVSVAFAVAAY-LLRYR 211 >gi|170733439|ref|YP_001765386.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3] gi|169816681|gb|ACA91264.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia cenocepacia MC0-3] Length = 289 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 148 GDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 198 >gi|28897368|ref|NP_796973.1| RNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|153838065|ref|ZP_01990732.1| RNA methyltransferase TrmH, group 1 [Vibrio parahaemolyticus AQ3810] gi|260363565|ref|ZP_05776394.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio parahaemolyticus K5030] gi|260876328|ref|ZP_05888683.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio parahaemolyticus AN-5034] gi|260898599|ref|ZP_05907095.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Vibrio parahaemolyticus Peru-466] gi|260899301|ref|ZP_05907696.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio parahaemolyticus AQ4037] gi|28805580|dbj|BAC58857.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD 2210633] gi|149748532|gb|EDM59391.1| RNA methyltransferase TrmH, group 1 [Vibrio parahaemolyticus AQ3810] gi|308086963|gb|EFO36658.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Vibrio parahaemolyticus Peru-466] gi|308092944|gb|EFO42639.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio parahaemolyticus AN-5034] gi|308106671|gb|EFO44211.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio parahaemolyticus AQ4037] gi|308112984|gb|EFO50524.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio parahaemolyticus K5030] gi|328472609|gb|EGF43472.1| RNA methyltransferase [Vibrio parahaemolyticus 10329] Length = 239 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 24/70 (34%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + E + +AL+ G E GL + + + +LN++ Sbjct: 88 WPMLEPRECGEKFAVEGQKHPVALVFGRERTGLTNEELQKCHYHVCIPANPEYSSLNLAM 147 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 148 AVQTLSYEVR 157 >gi|320528151|ref|ZP_08029316.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei F0204] gi|320131499|gb|EFW24064.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei F0204] Length = 238 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 87/217 (40%), Gaps = 6/217 (2%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106 L G +V AA+ RK+ +L K+ + + P + + I+ + Sbjct: 2 LLEGNVSVKAAILGNHRKVEKLYYDKHKNDKDLNFILHRAMEKEIPCMPLEREEINAMAA 61 Query: 107 KEAVHQGLALETAPLLSPTL--DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 H GL E +P + L + L++L+ V DP N+G I+R+ + CDG+I Sbjct: 62 -GRTHGGLVAEASPRIYQELSECMHGKTPFLVLLEGVEDPFNLGYIIRTLYSAGCDGLIL 120 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + S + +AKS++GA E++ + +L ++ + G +T + Sbjct: 121 PRHDWASAESTIAKSSAGAFEYMNIVMSDDLPKLVKDIKKQGIKTYAAMRKDAITYLEAD 180 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 L +G E +GL + ++ + Sbjct: 181 YRQPCLLAIGGEMRGLSSAVRNEIERNIYIPYANDFR 217 >gi|302833377|ref|XP_002948252.1| hypothetical protein VOLCADRAFT_45595 [Volvox carteri f. nagariensis] gi|300266472|gb|EFJ50659.1| hypothetical protein VOLCADRAFT_45595 [Volvox carteri f. nagariensis] Length = 155 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 5/98 (5%) Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP----K 243 + Q + + D + L+ GAE GL P Sbjct: 57 HSSWDAFFAFFQQLPNPKRLVAFTVYGDKYYAGPEFSYQPGDWLVFGAETSGLPPKAHSD 116 Query: 244 TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHF 280 + + + + + ++++N+S A V L+ Sbjct: 117 VLASGGCLVKIPIRDMHVRSINLSVAVGVGLFEAIRQL 154 >gi|270159572|ref|ZP_06188228.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968] gi|289165632|ref|YP_003455770.1| methyltransferase [Legionella longbeachae NSW150] gi|269987911|gb|EEZ94166.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968] gi|288858805|emb|CBJ12719.1| putative methyltransferase [Legionella longbeachae NSW150] Length = 251 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA++ G E GL + ++ +LN++ A + Y + Sbjct: 110 IAIVFGREHAGLTNEELLKCHYHINIPSNPEYSSLNLAQAVQIITYELR 158 >gi|160880554|ref|YP_001559522.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans ISDg] gi|160429220|gb|ABX42783.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans ISDg] Length = 238 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 78/218 (35%), Gaps = 9/218 (4%) Query: 58 SAALNNPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLAL 116 + + + + R +A PV I + Sbjct: 23 IEMIKSRPDIVKGVYIHSTFTDREHLEAICKENHIPVLQGDK----TIAKVSDKENVFVV 78 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 S T+DA ++ +L+ + ++ N+G ILR+AV F + + + + + Sbjct: 79 GVFEKYSCTVDATKSQIVLV---NPSNMGNLGTILRTAVGFGIHDVSFIEPGADVFNPKV 135 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 +S+ GAL + + + ++ ++ + T L+ + K +L+ G E Sbjct: 136 VRSSMGALFRLRHQYFESFSEYQKQNPNHEIFTFMLNGKKPLTINDCPKPKLFSLVFGNE 195 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL TS+ + + +LN++ A + Y Sbjct: 196 ATGLDDSYLSVGTSII-IPQSEEVDSLNLTIAVGIGTY 232 >gi|209966676|ref|YP_002299591.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum centenum SW] gi|209960142|gb|ACJ00779.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum centenum SW] Length = 153 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 P + L+LG E G P+ + H+ M ++LNV+ AAA+ L Sbjct: 80 HGVPYTDFAFHPDDTLLLGRESAGTPPEVAAACHAAVHIPMHPGARSLNVAIAAAMVLGE 139 Query: 276 TQNH 279 Sbjct: 140 ALRQ 143 >gi|194289317|ref|YP_002005224.1| tRNA:cm32/um32 methyltransferase (trmet(xm32)) [Cupriavidus taiwanensis LMG 19424] gi|193223152|emb|CAQ69157.1| tRNA:Cm32/Um32 methyltransferase (TrMet(Xm32)) [Cupriavidus taiwanensis LMG 19424] Length = 272 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A + G E GL + E ++ H+ +LN++ A + Y + Sbjct: 128 SGDVAFVFGNERYGLPNEVVERCNAVTHIPANPAYASLNLAQAVQLVAYEMR 179 >gi|289192450|ref|YP_003458391.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus sp. FS406-22] gi|288938900|gb|ADC69655.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus sp. FS406-22] Length = 228 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + ++ G E GLR + + + + +N+S+A AV LY Sbjct: 105 KGNVGIVFGREDDGLRNEEIDKCDLLVSIPTSEKYPIMNLSHAVAVILYEIY 156 >gi|323126650|gb|ADX23947.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 181 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + +L Sbjct: 19 VVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDVRFYDSL 78 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 D + + + + + G E GL +E A + Sbjct: 79 EDFVAQCQGKLHLISKFADKIYSEETYAD-DQPHYFLFGREDTGLPEAFMREHAEKALRI 137 Query: 255 HMPGI-IKALNVSNAAAVALYITQNH 279 M +++LNVSN + +Y Sbjct: 138 PMNDDHVRSLNVSNTVCMVVYEALRQ 163 >gi|294670969|ref|ZP_06735825.1| hypothetical protein NEIELOOT_02675 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307456|gb|EFE48699.1| hypothetical protein NEIELOOT_02675 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 272 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 21/51 (41%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 AL+ G E GL + + + ++ +LN++ A V Y + Sbjct: 140 TALVFGNETYGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIYSQ 190 >gi|251781836|ref|YP_002996138.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390465|dbj|BAH80924.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 198 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + +L Sbjct: 36 VVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDVRFYDSL 95 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 D + + + + + G E GL +E A + Sbjct: 96 EDFVAQCQGKLHLISKFADKIYSEETYAD-DQPHYFLFGREDTGLPEAFMREHAEKALRI 154 Query: 255 HMPGI-IKALNVSNAAAVALYITQNH 279 M +++LNVSN + +Y Sbjct: 155 PMNDDHVRSLNVSNTVCMVVYEALRQ 180 >gi|332532349|ref|ZP_08408229.1| tRNA:Cm32/Um32 methyltransferase [Pseudoalteromonas haloplanktis ANT/505] gi|332038216|gb|EGI74662.1| tRNA:Cm32/Um32 methyltransferase [Pseudoalteromonas haloplanktis ANT/505] Length = 241 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A Y T+ Sbjct: 107 NGPVALVFGRENSGLTNEELQLCNYHVCIPANPEYSSLNLAMAVQTLSYETR 158 >gi|328949341|ref|YP_004366678.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM 2489] gi|328449665|gb|AEB15381.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM 2489] Length = 270 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 63/199 (31%), Gaps = 8/199 (4%) Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 L +L + + I A + + + + Sbjct: 70 EELKKLIEAEDFDERRVCNFARNSLLAIIGTFPAEWDLVIAPHSNESFCVQNRKFFKGVS 129 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + + + P NIG+I R+A A C+ + + + S AL + Sbjct: 130 VYAEDIRSPFNIGSIFRTAEAMGCENVFISPNCTDPNQ-------SRALRSGMGCIETLG 182 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHL 254 + + + P+ + + +I+G+E G+ P+ + A + Sbjct: 183 YKRCSLEELPQDKPVFVLETGGTPITEFSFPKEGIVIIGSEELGVSPEALKRADYGRVSI 242 Query: 255 HMPGIIKALNVSNAAAVAL 273 M G+ +LNV A + + Sbjct: 243 PMTGLKASLNVGVAFGILM 261 >gi|217970682|ref|YP_002355916.1| RNA methyltransferase, TrmH family, group 1 [Thauera sp. MZ1T] gi|217508009|gb|ACK55020.1| RNA methyltransferase, TrmH family, group 1 [Thauera sp. MZ1T] Length = 245 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 19/49 (38%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + + +LN+ A V Y + Sbjct: 114 VALVFGNETSGLTNEEAALCSLPVTIPTDAGFSSLNLGAAVQVLAYELR 162 >gi|166364610|ref|YP_001656883.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] gi|166086983|dbj|BAG01691.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] Length = 266 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ALI G E +GL A + +LN++ A AV Y A Sbjct: 119 ALIFGPEDRGLSNSELNHAQRFVGIPANPQYSSLNLAQAVAVCSYELY-QRA 169 >gi|328725718|ref|XP_003248590.1| PREDICTED: putative TrmH family tRNA/rRNA methyltransferase-like [Acyrthosiphon pisum] Length = 344 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 13/199 (6%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106 + G H V A+ + I ++L + + V+TVP ID + Sbjct: 5 IIVGRHAVKEAITSGHT-INKVLIQEGINKKQIGEILKIAKSEKIVVQTVPKSKIDYLTD 63 Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 HQG+A + AP L+ + L++LD + DPHN+G+I+R+A A Sbjct: 64 --VPHQGIAAQIAPYPYKELEDFISETKDIDHVPCLLMLDGLEDPHNLGSIMRTADAIGI 121 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 DGII KR S +A +AK+++GA++H+P IR++NL ++++ + G + + Sbjct: 122 DGIIIPKRRSVQLNATVAKASTGAIQHVPVIRVTNLPQTIERLQEVRYWVAGTDAKNATD 181 Query: 220 LEQEIKNDKIALILGAEGK 238 Q + +++G+EG+ Sbjct: 182 YRQMDAGMPLVIVIGSEGE 200 >gi|325928099|ref|ZP_08189312.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas perforans 91-118] gi|325541597|gb|EGD13126.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas perforans 91-118] Length = 228 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL + + H+ +LN++ A V Y + Sbjct: 86 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 134 >gi|325916981|ref|ZP_08179223.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas vesicatoria ATCC 35937] gi|325536832|gb|EGD08586.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas vesicatoria ATCC 35937] Length = 293 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL + + H+ +LN++ A V Y + Sbjct: 151 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 199 >gi|308187782|ref|YP_003931913.1| RNA methyltransferase [Pantoea vagans C9-1] gi|308058292|gb|ADO10464.1| putative RNA methyltransferase [Pantoea vagans C9-1] Length = 250 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 20/50 (40%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + + +LN++ A + Y + Sbjct: 108 PVALVFGRERVGLTNEELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVR 157 >gi|294664933|ref|ZP_06730248.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605303|gb|EFF48639.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 254 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL + + H+ +LN++ A V Y + Sbjct: 112 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160 >gi|294624425|ref|ZP_06703114.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601274|gb|EFF45322.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 254 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL + + H+ +LN++ A V Y + Sbjct: 112 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160 >gi|289671293|ref|ZP_06492368.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 254 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL + + H+ +LN++ A V Y + Sbjct: 112 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160 >gi|289665695|ref|ZP_06487276.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 254 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL + + H+ +LN++ A V Y + Sbjct: 112 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160 >gi|195450248|ref|XP_002072430.1| GK22831 [Drosophila willistoni] gi|194168515|gb|EDW83416.1| GK22831 [Drosophila willistoni] Length = 1132 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 21/64 (32%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 K L+LG E G+ + G++++LNV ++ ++ Sbjct: 1064 HSTSFSDFRFPKKCVLLLGHEKHGIPVDLIGFLDYAVEIPQFGMVRSLNVHVTGSLFIWE 1123 Query: 276 TQNH 279 Sbjct: 1124 FCKQ 1127 >gi|188576184|ref|YP_001913113.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520636|gb|ACD58581.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 228 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL + + H+ +LN++ A V Y + Sbjct: 86 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 134 >gi|166711820|ref|ZP_02243027.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 254 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL + + H+ +LN++ A V Y + Sbjct: 112 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160 >gi|58582333|ref|YP_201349.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426927|gb|AAW75964.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 304 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL + + H+ +LN++ A V Y + Sbjct: 162 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 210 >gi|21243118|ref|NP_642700.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] gi|21108636|gb|AAM37236.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] Length = 254 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL + + H+ +LN++ A V Y + Sbjct: 112 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160 >gi|84624212|ref|YP_451584.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368152|dbj|BAE69310.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 254 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL + + H+ +LN++ A V Y + Sbjct: 112 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160 >gi|78048137|ref|YP_364312.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036567|emb|CAJ24258.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 254 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL + + H+ +LN++ A V Y + Sbjct: 112 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160 >gi|330807633|ref|YP_004352095.1| tRNA/rRNA methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375741|gb|AEA67091.1| putative tRNA/rRNA methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 256 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 19/49 (38%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + H+ +LN+ A V Y + Sbjct: 110 IALVFGREDSGLTNDELQRCHFHVHIPSDPEFSSLNLGAAVQVLSYEVR 158 >gi|323967980|gb|EGB63392.1| RNA methyltransferase [Escherichia coli M863] gi|323977285|gb|EGB72371.1| RNA methyltransferase [Escherichia coli TW10509] gi|324113026|gb|EGC07002.1| RNA methyltransferase [Escherichia fergusonii B253] gi|325496435|gb|EGC94294.1| methyltransferase [Escherichia fergusonii ECD227] gi|327252240|gb|EGE63912.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli STEC_7v] Length = 246 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|309784714|ref|ZP_07679347.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella dysenteriae 1617] gi|308927084|gb|EFP72558.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella dysenteriae 1617] Length = 245 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|331684182|ref|ZP_08384778.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli H299] gi|320196373|gb|EFW70997.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli WV_060327] gi|331079134|gb|EGI50336.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli H299] Length = 246 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|300958833|ref|ZP_07170944.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 175-1] gi|300314518|gb|EFJ64302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 175-1] Length = 246 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|284922482|emb|CBG35569.1| putative RNA methyltransferase [Escherichia coli 042] Length = 246 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|281179586|dbj|BAI55916.1| putative RNA methyltransferase [Escherichia coli SE15] Length = 246 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|260869221|ref|YP_003235623.1| putative methyltransferase [Escherichia coli O111:H- str. 11128] gi|257765577|dbj|BAI37072.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128] gi|323177343|gb|EFZ62931.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli 1180] Length = 245 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|218701042|ref|YP_002408671.1| putative methyltransferase [Escherichia coli IAI39] gi|218371028|emb|CAR18855.1| putative methyltransferase [Escherichia coli IAI39] Length = 246 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|163802460|ref|ZP_02196353.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4] gi|159173761|gb|EDP58576.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4] Length = 239 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 23/70 (32%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + E + +AL+ G E GL + + +LN++ Sbjct: 88 WPMLEPRECGEKFAVEGQKHPVALVFGRERTGLTNDELQKCHYHVCIPANPEYSSLNLAM 147 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 148 AVQTLSYEVR 157 >gi|153835375|ref|ZP_01988042.1| LasT protein [Vibrio harveyi HY01] gi|156973366|ref|YP_001444273.1| rRNA methylase [Vibrio harveyi ATCC BAA-1116] gi|148868097|gb|EDL67263.1| LasT protein [Vibrio harveyi HY01] gi|156524960|gb|ABU70046.1| hypothetical protein VIBHAR_01053 [Vibrio harveyi ATCC BAA-1116] Length = 239 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 23/70 (32%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + E + +AL+ G E GL + + +LN++ Sbjct: 88 WPMLEPRECGEKFAVEGQKHPVALVFGRERTGLTNDELQKCHYHVCIPANPEYSSLNLAM 147 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 148 AVQTLSYEVR 157 >gi|170019185|ref|YP_001724139.1| RNA methyltransferase [Escherichia coli ATCC 8739] gi|312973224|ref|ZP_07787396.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli 1827-70] gi|169754113|gb|ACA76812.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli ATCC 8739] gi|310331819|gb|EFP99054.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli 1827-70] gi|323941206|gb|EGB37391.1| RNA methyltransferase [Escherichia coli E482] Length = 246 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|147919481|ref|YP_686779.1| rRNA methyltransferase [uncultured methanogenic archaeon RC-I] gi|110622175|emb|CAJ37453.1| rRNA methyltransferase (SpoU family) [uncultured methanogenic archaeon RC-I] Length = 249 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 27/71 (38%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + S + E K +AL+ G E GL + E + + +N+S Sbjct: 93 HIRMPCFSPRELKTLLEDKQGTVALLFGKENHGLPNEILEKCGVVLSIPTSDDYPVMNLS 152 Query: 267 NAAAVALYITQ 277 +A AV LY Sbjct: 153 HAVAVVLYELA 163 >gi|90579380|ref|ZP_01235190.1| putative RNA methyltransferase, TrmH family protein [Vibrio angustum S14] gi|90440213|gb|EAS65394.1| putative RNA methyltransferase, TrmH family protein [Vibrio angustum S14] Length = 246 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + ++ +LN++ A Y + Sbjct: 106 QHPVAILFGRERTGLTNEELQKCHCHVYIPANPEYSSLNLAMAVQTITYEVR 157 >gi|77460836|ref|YP_350343.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens Pf0-1] gi|77384839|gb|ABA76352.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 264 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 19/49 (38%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + H+ +LN+ A V Y + Sbjct: 118 IALVFGREDSGLTNDELQRCHYHVHIPSDPEFSSLNLGAAVQVLSYEVR 166 >gi|194432193|ref|ZP_03064482.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae 1012] gi|194419722|gb|EDX35802.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae 1012] gi|332089667|gb|EGI94768.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella dysenteriae 155-74] Length = 245 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|110642697|ref|YP_670427.1| tRNA/rRNA methyltransferase YfhQ [Escherichia coli 536] gi|191172639|ref|ZP_03034178.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11] gi|300998261|ref|ZP_07181949.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 200-1] gi|123147823|sp|Q0TEV3|TRMJ_ECOL5 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|110344289|gb|ABG70526.1| hypothetical tRNA/rRNA methyltransferase YfhQ [Escherichia coli 536] gi|190907112|gb|EDV66712.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11] gi|300304033|gb|EFJ58553.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 200-1] gi|324011236|gb|EGB80455.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 60-1] Length = 246 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|15803059|ref|NP_289089.1| putative ATP synthase beta subunit [Escherichia coli O157:H7 EDL933] gi|15832652|ref|NP_311425.1| ATP synthase beta subunit [Escherichia coli O157:H7 str. Sakai] gi|74313058|ref|YP_311477.1| putative ATP synthase subunit beta [Shigella sonnei Ss046] gi|82777915|ref|YP_404264.1| putative ATP synthase beta subunit [Shigella dysenteriae Sd197] gi|157158953|ref|YP_001463855.1| RNA methyltransferase [Escherichia coli E24377A] gi|168748403|ref|ZP_02773425.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4113] gi|168757811|ref|ZP_02782818.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4401] gi|168761148|ref|ZP_02786155.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4501] gi|168768631|ref|ZP_02793638.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4486] gi|168773547|ref|ZP_02798554.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4196] gi|168778504|ref|ZP_02803511.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4076] gi|168787884|ref|ZP_02812891.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC869] gi|168798909|ref|ZP_02823916.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC508] gi|191169250|ref|ZP_03031002.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A] gi|193068368|ref|ZP_03049331.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E110019] gi|195936678|ref|ZP_03082060.1| methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208808795|ref|ZP_03251132.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4206] gi|208814295|ref|ZP_03255624.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4045] gi|208819499|ref|ZP_03259819.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4042] gi|209397596|ref|YP_002272007.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4115] gi|209920010|ref|YP_002294094.1| putative RNA methyltransferase [Escherichia coli SE11] gi|217326776|ref|ZP_03442859.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. TW14588] gi|218555057|ref|YP_002387970.1| putative methyltransferase [Escherichia coli IAI1] gi|254794482|ref|YP_003079319.1| tRNA Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|256017319|ref|ZP_05431184.1| predicted methyltransferase [Shigella sp. D9] gi|261223032|ref|ZP_05937313.1| predicted methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261259417|ref|ZP_05951950.1| putative methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291283757|ref|YP_003500575.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia coli O55:H7 str. CB9615] gi|293446886|ref|ZP_06663308.1| tRNA/rRNA methyltransferase [Escherichia coli B088] gi|300817697|ref|ZP_07097912.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 107-1] gi|300820797|ref|ZP_07100947.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 119-7] gi|300927098|ref|ZP_07142849.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 182-1] gi|301330369|ref|ZP_07223016.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 78-1] gi|309794420|ref|ZP_07688843.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 145-7] gi|331669280|ref|ZP_08370128.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA271] gi|331678525|ref|ZP_08379200.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli H591] gi|332278314|ref|ZP_08390727.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella sp. D9] gi|20178206|sp|Q8XA83|TRMJ_ECO57 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|123561907|sp|Q32D32|TRMJ_SHIDS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|123616509|sp|Q3YZ20|TRMJ_SHISS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|12516936|gb|AAG57646.1|AE005483_5 putative ATP synthase beta subunit [Escherichia coli O157:H7 str. EDL933] gi|13362869|dbj|BAB36821.1| putative ATP synthase beta subunit [Escherichia coli O157:H7 str. Sakai] gi|73856535|gb|AAZ89242.1| putative ATP synthase beta subunit [Shigella sonnei Ss046] gi|81242063|gb|ABB62773.1| putative ATP synthase beta subunit [Shigella dysenteriae Sd197] gi|157080983|gb|ABV20691.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E24377A] gi|187770559|gb|EDU34403.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4196] gi|188017081|gb|EDU55203.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4113] gi|189003494|gb|EDU72480.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4076] gi|189355295|gb|EDU73714.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4401] gi|189362206|gb|EDU80625.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4486] gi|189368377|gb|EDU86793.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4501] gi|189372329|gb|EDU90745.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC869] gi|189378640|gb|EDU97056.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC508] gi|190900703|gb|EDV60500.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A] gi|192958320|gb|EDV88760.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E110019] gi|208728596|gb|EDZ78197.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4206] gi|208735572|gb|EDZ84259.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4045] gi|208739622|gb|EDZ87304.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4042] gi|209158996|gb|ACI36429.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4115] gi|209763218|gb|ACI79921.1| putative ATP synthase beta subunit [Escherichia coli] gi|209763220|gb|ACI79922.1| putative ATP synthase beta subunit [Escherichia coli] gi|209763222|gb|ACI79923.1| putative ATP synthase beta subunit [Escherichia coli] gi|209763224|gb|ACI79924.1| putative ATP synthase beta subunit [Escherichia coli] gi|209763226|gb|ACI79925.1| putative ATP synthase beta subunit [Escherichia coli] gi|209913269|dbj|BAG78343.1| putative RNA methyltransferase [Escherichia coli SE11] gi|217319143|gb|EEC27568.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. TW14588] gi|218361825|emb|CAQ99423.1| putative methyltransferase [Escherichia coli IAI1] gi|254593882|gb|ACT73243.1| tRNA Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|290763630|gb|ADD57591.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia coli O55:H7 str. CB9615] gi|291323716|gb|EFE63144.1| tRNA/rRNA methyltransferase [Escherichia coli B088] gi|300416917|gb|EFK00228.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 182-1] gi|300526550|gb|EFK47619.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 119-7] gi|300529685|gb|EFK50747.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 107-1] gi|300843703|gb|EFK71463.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 78-1] gi|308121876|gb|EFO59138.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 145-7] gi|320188871|gb|EFW63530.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str. EC1212] gi|320200096|gb|EFW74685.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli EC4100B] gi|320640881|gb|EFX10369.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia coli O157:H7 str. G5101] gi|320646323|gb|EFX15250.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia coli O157:H- str. 493-89] gi|320651503|gb|EFX19890.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia coli O157:H- str. H 2687] gi|320657214|gb|EFX25023.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662820|gb|EFX30152.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia coli O55:H7 str. USDA 5905] gi|320667624|gb|EFX34539.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia coli O157:H7 str. LSU-61] gi|323169391|gb|EFZ55067.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella sonnei 53G] gi|323944589|gb|EGB40657.1| RNA methyltransferase [Escherichia coli H120] gi|324019987|gb|EGB89206.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 117-3] gi|326340336|gb|EGD64140.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str. 1125] gi|326345020|gb|EGD68764.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str. 1044] gi|331064474|gb|EGI36385.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA271] gi|331074985|gb|EGI46305.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli H591] gi|332087983|gb|EGI93108.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella boydii 5216-82] gi|332100666|gb|EGJ04012.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella sp. D9] Length = 245 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|16130457|ref|NP_417027.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|24113861|ref|NP_708371.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 301] gi|26248900|ref|NP_754940.1| putative tRNA/rRNA methyltransferase YfhQ [Escherichia coli CFT073] gi|30063922|ref|NP_838093.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 2457T] gi|82544981|ref|YP_408928.1| ATP synthase beta subunit [Shigella boydii Sb227] gi|89109338|ref|AP_003118.1| predicted methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|91211859|ref|YP_541845.1| putative ATP synthase subunit beta [Escherichia coli UTI89] gi|110806463|ref|YP_689983.1| putative ATP synthase subunit beta [Shigella flexneri 5 str. 8401] gi|117624760|ref|YP_853673.1| putative methyltransferase [Escherichia coli APEC O1] gi|157162008|ref|YP_001459326.1| RNA methyltransferase [Escherichia coli HS] gi|170082142|ref|YP_001731462.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170683683|ref|YP_001744721.1| RNA methyltransferase [Escherichia coli SMS-3-5] gi|187732283|ref|YP_001881323.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC 3083-94] gi|188493660|ref|ZP_03000930.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 53638] gi|193064014|ref|ZP_03045099.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22] gi|194427269|ref|ZP_03059819.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171] gi|194437647|ref|ZP_03069743.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 101-1] gi|215487882|ref|YP_002330313.1| predicted methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|218559458|ref|YP_002392371.1| methyltransferase [Escherichia coli S88] gi|218690652|ref|YP_002398864.1| putative methyltransferase [Escherichia coli ED1a] gi|218696159|ref|YP_002403826.1| putative methyltransferase [Escherichia coli 55989] gi|218706035|ref|YP_002413554.1| putative methyltransferase [Escherichia coli UMN026] gi|227887568|ref|ZP_04005373.1| possible methyltransferase [Escherichia coli 83972] gi|238901697|ref|YP_002927493.1| putative methyltransferase [Escherichia coli BW2952] gi|253772572|ref|YP_003035403.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162506|ref|YP_003045614.1| putative methyltransferase [Escherichia coli B str. REL606] gi|256021783|ref|ZP_05435648.1| predicted methyltransferase [Escherichia sp. 4_1_40B] gi|260845162|ref|YP_003222940.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009] gi|293405973|ref|ZP_06649965.1| RNA methyltransferase [Escherichia coli FVEC1412] gi|293410947|ref|ZP_06654523.1| conserved hypothetical protein [Escherichia coli B354] gi|293415800|ref|ZP_06658443.1| tRNA/rRNA methyltransferase [Escherichia coli B185] gi|297517122|ref|ZP_06935508.1| putative methyltransferase [Escherichia coli OP50] gi|298381774|ref|ZP_06991373.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia coli FVEC1302] gi|300898358|ref|ZP_07116705.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 198-1] gi|300904291|ref|ZP_07122149.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 84-1] gi|300920692|ref|ZP_07137100.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 115-1] gi|300930177|ref|ZP_07145595.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 187-1] gi|300940214|ref|ZP_07154814.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 21-1] gi|300951756|ref|ZP_07165575.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 116-1] gi|300982032|ref|ZP_07175854.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 45-1] gi|301022139|ref|ZP_07186062.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 196-1] gi|301024815|ref|ZP_07188452.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 69-1] gi|301047169|ref|ZP_07194262.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 185-1] gi|301302891|ref|ZP_07209019.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 124-1] gi|301648290|ref|ZP_07248031.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 146-1] gi|306814398|ref|ZP_07448560.1| putative methyltransferase [Escherichia coli NC101] gi|307139167|ref|ZP_07498523.1| putative methyltransferase [Escherichia coli H736] gi|307313897|ref|ZP_07593513.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W] gi|312965450|ref|ZP_07779682.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli 2362-75] gi|331643153|ref|ZP_08344288.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli H736] gi|331648230|ref|ZP_08349320.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli M605] gi|331653966|ref|ZP_08354967.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli M718] gi|331658680|ref|ZP_08359624.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA206] gi|331664097|ref|ZP_08365007.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA143] gi|331673988|ref|ZP_08374751.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA280] gi|83287927|sp|P0AE02|TRMJ_ECOL6 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|83287928|sp|P0AE01|TRMJ_ECOLI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|83287929|sp|P0AE03|TRMJ_SHIFL RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|122422895|sp|Q1R8K0|TRMJ_ECOUT RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|123342618|sp|Q0T1Y7|TRMJ_SHIF8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|123558992|sp|Q31XV8|TRMJ_SHIBS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|166234835|sp|A1AE69|TRMJ_ECOK1 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|26109306|gb|AAN81508.1|AE016764_190 Hypothetical tRNA/rRNA methyltransferase yfhQ [Escherichia coli CFT073] gi|1788881|gb|AAC75585.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|1799940|dbj|BAA16426.1| predicted methyltransferase [Escherichia coli str. K12 substr. W3110] gi|24052955|gb|AAN44078.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 301] gi|30042178|gb|AAP17903.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 2457T] gi|81246392|gb|ABB67100.1| putative ATP synthase beta subunit [Shigella boydii Sb227] gi|91073433|gb|ABE08314.1| putative ATP synthase beta subunit [Escherichia coli UTI89] gi|110616011|gb|ABF04678.1| putative ATP synthase beta subunit [Shigella flexneri 5 str. 8401] gi|115513884|gb|ABJ01959.1| putative methyltransferase [Escherichia coli APEC O1] gi|157067688|gb|ABV06943.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli HS] gi|169889977|gb|ACB03684.1| predicted methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170521401|gb|ACB19579.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli SMS-3-5] gi|187429275|gb|ACD08549.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC 3083-94] gi|188488859|gb|EDU63962.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 53638] gi|192929249|gb|EDV82858.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22] gi|194414590|gb|EDX30862.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171] gi|194423453|gb|EDX39444.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 101-1] gi|215265954|emb|CAS10363.1| predicted methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|218352891|emb|CAU98690.1| putative methyltransferase [Escherichia coli 55989] gi|218366227|emb|CAR03974.1| putative methyltransferase [Escherichia coli S88] gi|218428216|emb|CAR09131.2| putative methyltransferase [Escherichia coli ED1a] gi|218433132|emb|CAR14028.1| putative methyltransferase [Escherichia coli UMN026] gi|222034243|emb|CAP76984.1| Uncharacterized tRNA/rRNA methyltransferase yfhQ [Escherichia coli LF82] gi|227835918|gb|EEJ46384.1| possible methyltransferase [Escherichia coli 83972] gi|238862663|gb|ACR64661.1| predicted methyltransferase [Escherichia coli BW2952] gi|242378132|emb|CAQ32905.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli BL21(DE3)] gi|253323616|gb|ACT28218.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974407|gb|ACT40078.1| predicted methyltransferase [Escherichia coli B str. REL606] gi|253978574|gb|ACT44244.1| predicted methyltransferase [Escherichia coli BL21(DE3)] gi|257760309|dbj|BAI31806.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260448388|gb|ACX38810.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli DH1] gi|281601935|gb|ADA74919.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella flexneri 2002017] gi|291428181|gb|EFF01208.1| RNA methyltransferase [Escherichia coli FVEC1412] gi|291433448|gb|EFF06427.1| tRNA/rRNA methyltransferase [Escherichia coli B185] gi|291471415|gb|EFF13899.1| conserved hypothetical protein [Escherichia coli B354] gi|294491693|gb|ADE90449.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli IHE3034] gi|298279216|gb|EFI20730.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia coli FVEC1302] gi|299881340|gb|EFI89551.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 196-1] gi|300300917|gb|EFJ57302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 185-1] gi|300357970|gb|EFJ73840.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 198-1] gi|300396346|gb|EFJ79884.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 69-1] gi|300403749|gb|EFJ87287.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 84-1] gi|300408860|gb|EFJ92398.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 45-1] gi|300412340|gb|EFJ95650.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 115-1] gi|300449040|gb|EFK12660.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 116-1] gi|300454970|gb|EFK18463.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 21-1] gi|300461937|gb|EFK25430.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 187-1] gi|300841826|gb|EFK69586.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 124-1] gi|301073641|gb|EFK88447.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 146-1] gi|305851792|gb|EFM52244.1| putative methyltransferase [Escherichia coli NC101] gi|306906398|gb|EFN36913.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W] gi|307554555|gb|ADN47330.1| RNA methyltransferase [Escherichia coli ABU 83972] gi|307625913|gb|ADN70217.1| putative methyltransferase [Escherichia coli UM146] gi|309702864|emb|CBJ02195.1| putative RNA methyltransferase [Escherichia coli ETEC H10407] gi|312289870|gb|EFR17758.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli 2362-75] gi|312947109|gb|ADR27936.1| putative methyltransferase [Escherichia coli O83:H1 str. NRG 857C] gi|313651021|gb|EFS15421.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri 2a str. 2457T] gi|315061851|gb|ADT76178.1| predicted methyltransferase [Escherichia coli W] gi|315137156|dbj|BAJ44315.1| RNA methyltransferase [Escherichia coli DH1] gi|315256554|gb|EFU36522.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 85-1] gi|315288055|gb|EFU47457.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 110-3] gi|315292492|gb|EFU51844.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 153-1] gi|315300495|gb|EFU59724.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 16-3] gi|315615793|gb|EFU96425.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli 3431] gi|320175096|gb|EFW50209.1| tRNA:Cm32/Um32 methyltransferase [Shigella dysenteriae CDC 74-1112] gi|320186421|gb|EFW61151.1| tRNA:Cm32/Um32 methyltransferase [Shigella flexneri CDC 796-83] gi|323170193|gb|EFZ55846.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli LT-68] gi|323188348|gb|EFZ73640.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli RN587/1] gi|323377568|gb|ADX49836.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli KO11] gi|323936272|gb|EGB32563.1| RNA methyltransferase [Escherichia coli E1520] gi|323949192|gb|EGB45083.1| RNA methyltransferase [Escherichia coli H252] gi|323955773|gb|EGB51531.1| RNA methyltransferase [Escherichia coli H263] gi|323961348|gb|EGB56960.1| RNA methyltransferase [Escherichia coli H489] gi|323971054|gb|EGB66302.1| RNA methyltransferase [Escherichia coli TA007] gi|324008496|gb|EGB77715.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 57-2] gi|324118258|gb|EGC12154.1| RNA methyltransferase [Escherichia coli E1167] gi|330912308|gb|EGH40818.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli AA86] gi|331039951|gb|EGI12171.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli H736] gi|331043090|gb|EGI15230.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli M605] gi|331048815|gb|EGI20891.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli M718] gi|331054345|gb|EGI26372.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA206] gi|331059896|gb|EGI31873.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA143] gi|331069261|gb|EGI40653.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA280] gi|332092802|gb|EGI97871.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella boydii 3594-74] gi|332344407|gb|AEE57741.1| RNA methyltransferase [Escherichia coli UMNK88] gi|332754064|gb|EGJ84435.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri 4343-70] gi|332754141|gb|EGJ84510.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri K-671] gi|332756262|gb|EGJ86613.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri 2747-71] gi|332765884|gb|EGJ96095.1| tRNA:Cm32/Um32 methyltransferase [Shigella flexneri 2930-71] gi|333000512|gb|EGK20091.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri VA-6] gi|333000896|gb|EGK20467.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri K-218] gi|333002330|gb|EGK21894.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri K-272] gi|333016153|gb|EGK35485.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri K-227] gi|333016404|gb|EGK35735.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri K-304] Length = 246 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|308177906|ref|YP_003917312.1| RNA methyltransferase [Arthrobacter arilaitensis Re117] gi|307745369|emb|CBT76341.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117] Length = 153 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E GL + ++ T + L M +++N++N A+V + Sbjct: 91 YETSDILLFGRESVGLSSEEKKHPRVTDLVRLPMLPGRRSMNLANTASVVAFEAWRQ 147 >gi|303244844|ref|ZP_07331172.1| RNA methyltransferase, TrmH family, group 1 [Methanothermococcus okinawensis IH1] gi|302484794|gb|EFL47730.1| RNA methyltransferase, TrmH family, group 1 [Methanothermococcus okinawensis IH1] Length = 231 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 19/47 (40%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ G E GL K E + +N+S+A ++ LY Sbjct: 110 IVFGREDDGLSNKELELCDLFVSIPTSEKYPIMNLSHAVSIILYELY 156 >gi|290954068|ref|ZP_06558689.1| hypothetical protein FtulhU_07312 [Francisella tularensis subsp. holarctica URFT1] gi|295312534|ref|ZP_06803296.1| hypothetical protein FtulhU_07304 [Francisella tularensis subsp. holarctica URFT1] Length = 67 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 17/34 (50%) Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +A L M G + +LNVS A +ALY T Sbjct: 31 CDFLAKLPMLGEVSSLNVSVATGIALYETVRQRT 64 >gi|89256903|ref|YP_514265.1| rRNA methylase [Francisella tularensis subsp. holarctica LVS] gi|169656715|ref|YP_001429146.2| hypothetical protein FTA_1715 [Francisella tularensis subsp. holarctica FTNF002-00] gi|89144734|emb|CAJ80065.1| rRNA methylase [Francisella tularensis subsp. holarctica LVS] gi|164551783|gb|ABU62190.2| hypothetical protein FTA_1715 [Francisella tularensis subsp. holarctica FTNF002-00] Length = 63 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 17/34 (50%) Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +A L M G + +LNVS A +ALY T Sbjct: 27 CDFLAKLPMLGEVSSLNVSVATGIALYETVRQRT 60 >gi|323499943|ref|ZP_08104902.1| RNA methyltransferase, TrmH family protein [Vibrio sinaloensis DSM 21326] gi|323315184|gb|EGA68236.1| RNA methyltransferase, TrmH family protein [Vibrio sinaloensis DSM 21326] Length = 241 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 26/70 (37%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + +E +N +AL+ G E GL +T + +LN++ Sbjct: 88 WPMLEPRECGQKFVEEGQNAPVALVFGRERTGLTNDELQTCHFHVCIPANPEYSSLNLAM 147 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 148 AVQTLSYEIR 157 >gi|255311931|pdb|3IC6|A Chain A, Crystal Structure Of Putative Methylase Family Protein From Neisseria Gonorrhoeae Length = 223 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+AL+ G E GL + + ++ +LN++ A V Y + Sbjct: 141 EKVALVFGNETFGLSIEEVRACNRLXTINGNPDYFSLNLAQAVQVVCYEIFSQ 193 >gi|159489640|ref|XP_001702805.1| predicted protein [Chlamydomonas reinhardtii] gi|158280827|gb|EDP06584.1| predicted protein [Chlamydomonas reinhardtii] Length = 153 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 3/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL H P N G + RS A + ++ L ++ +++ S Sbjct: 1 IVLVHPQIPQNTGNVARSCAATGTPLHLVGPLGFELDNKKLKRAGLDYWDNVAVALHSTW 60 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAH 253 + ++ + L+ GAE GL P+ + A Sbjct: 61 DHFFAAFINLPGPKRLVAFTVAGWDDTVEFTYQSGDWLVFGAETSGLPPQVRPVTVRYAR 120 Query: 254 LHMPGI-IKALNVSNAAAVALYITQNHF 280 + + ++++N++ AA + L+ Sbjct: 121 IPIRDTHVRSINLAVAAGIGLFEAVRQL 148 >gi|298529619|ref|ZP_07017022.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira thiodismutans ASO3-1] gi|298511055|gb|EFI34958.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira thiodismutans ASO3-1] Length = 252 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 28/75 (37%) Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 W +++ + E + AL+ G E KGL E + + +LN Sbjct: 86 WRKGVFLPWQAAQEIMRPETLDQDTALVFGPEDKGLANHEIELCPRIISIPTTSQAWSLN 145 Query: 265 VSNAAAVALYITQNH 279 +S A + LY H Sbjct: 146 LSQAVLLVLYECFKH 160 >gi|86141816|ref|ZP_01060340.1| tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] gi|85831379|gb|EAQ49835.1| tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] Length = 179 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 A+I G E KG++ K + + + + G + N+S + + L+ + Sbjct: 125 AIIFGNEVKGVKQKVVDASDIVLEIPQVGTKHSFNISVSVGIVLWDLYSKII 176 >gi|325921164|ref|ZP_08183033.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas gardneri ATCC 19865] gi|325548358|gb|EGD19343.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas gardneri ATCC 19865] Length = 255 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + H+ +LN++ A V Y + Sbjct: 112 VAIVFGRERTGLTNDELQLCHAAVHIPSDPAFSSLNLAAAVQVLAYEVR 160 >gi|167586794|ref|ZP_02379182.1| RNA methyltransferase TrmH, group 1 [Burkholderia ubonensis Bu] Length = 269 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + + +++AH+ +LN++ A V Y + Sbjct: 129 TGDIALVFGNERTGLANEHVDQCSALAHIPANPAYSSLNLAQAVQVLAYELR 180 >gi|188991297|ref|YP_001903307.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. B100] gi|167733057|emb|CAP51255.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris] Length = 258 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + H+ +LN+++A V Y + Sbjct: 112 VAIVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLASAVQVLAYEMR 160 >gi|21231714|ref|NP_637631.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768160|ref|YP_242922.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|21113416|gb|AAM41555.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573492|gb|AAY48902.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] Length = 258 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + H+ +LN+++A V Y + Sbjct: 112 VAIVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLASAVQVLAYEMR 160 >gi|257465416|ref|ZP_05629787.1| tRNA/rRNA methyltransferase [Actinobacillus minor 202] gi|257451076|gb|EEV25119.1| tRNA/rRNA methyltransferase [Actinobacillus minor 202] Length = 251 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 Q K+AL+ G E GL + ++ +LN++ A +A Y + Sbjct: 111 QHTLKGKVALVFGRERIGLTNEELLKCHYHLNIPTNPEYGSLNLAMAVQLACYEVR 166 >gi|227876391|ref|ZP_03994503.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] gi|227842932|gb|EEJ53129.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] Length = 197 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +I G E G+ P TQE + + G ++LNV +AAA++++ Sbjct: 135 CELPRRCLMIFGEESSGITPATQEILDHLIQITQYGSTRSLNVGHAAAISMWAWVR 190 >gi|145220847|ref|YP_001131525.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK] gi|315442199|ref|YP_004075078.1| rRNA methylase [Mycobacterium sp. Spyr1] gi|145213333|gb|ABP42737.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK] gi|315260502|gb|ADT97243.1| rRNA methylase [Mycobacterium sp. Spyr1] Length = 215 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + LI GAEG G+ + A + G +++N S AA + ++ Sbjct: 153 LPRECLLIFGAEGPGITEDAKTGAALAVSIAQFGSTRSINASVAAGIVMHAWIRQ 207 >gi|301166246|emb|CBW25821.1| putative SpoU rRNA methylase family protein [Bacteriovorax marinus SJ] Length = 268 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 2/155 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 + + +VLD++ N+G++ R+A A + E++ AKSA G + I Sbjct: 111 NDEPNPIHLVLDNLRSSFNVGSLFRTAEAIGIKEVHLCGYTPTPENSKTAKSALGTDKWI 170 Query: 188 PYIRISNL-TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + + + + K LE+ + + A++LG E GL Sbjct: 171 KWSYWESSLDCIDALKERGASIYAFETEKNAKALEEVREIRECAIVLGNERYGLNESVLN 230 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN-HF 280 + + + + G +LNV A+A+Y Sbjct: 231 RSDEILKIRLDGKKNSLNVGTCGAIAMYHMARVQR 265 >gi|293390584|ref|ZP_06634918.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951118|gb|EFE01237.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter actinomycetemcomitans D7S-1] Length = 246 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N K+A++ G E GL + + +LN++ A + Y + Sbjct: 106 NGKVAIVFGRERVGLTNEELLKCHYHVTIPANPDYASLNLAMAVQLIAYEVR 157 >gi|254786631|ref|YP_003074060.1| tRNA-methyltransferase TrmJ [Teredinibacter turnerae T7901] gi|237685931|gb|ACR13195.1| tRNA-methyltransferase TrmJ [Teredinibacter turnerae T7901] Length = 261 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 24/71 (33%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + E +A++ G E +GL + H+ ALN+S Sbjct: 91 PWPLLTPRECGDRCWFEAAKHPVAVVFGREDRGLTNEELHKCNYHVHIPSNPEYSALNIS 150 Query: 267 NAAAVALYITQ 277 A V Y + Sbjct: 151 AALQVICYEIR 161 >gi|67923340|ref|ZP_00516822.1| RNA methyltransferase TrmH, group 1 [Crocosphaera watsonii WH 8501] gi|67854812|gb|EAM50089.1| RNA methyltransferase TrmH, group 1 [Crocosphaera watsonii WH 8501] Length = 248 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 21/51 (41%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 AL+ G E +GL + + A + +LN++ A AV Y Sbjct: 111 NSALMFGTEDRGLNNEELKYAQRFVSIPANPDYPSLNLAQAVAVCSYELYQ 161 >gi|238023026|ref|ZP_04603452.1| hypothetical protein GCWU000324_02948 [Kingella oralis ATCC 51147] gi|237865409|gb|EEP66549.1| hypothetical protein GCWU000324_02948 [Kingella oralis ATCC 51147] Length = 154 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 4/150 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I+R C+ + P +SA + ++ H I Sbjct: 1 MFTVVLFEPEIPPNTGNIIRLCANTGCELRLIKPLGFPLDSAKMKRAGLDY--HEFSTLI 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + A G + L++ K + + G E +GL +T Sbjct: 59 VHENLAECLDTLQGKRIFALTTKGKNRPDSVAFQAGDVFLFGPETRGLPATVLDTLPENQ 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 M +++N+SN A+ ++ Sbjct: 119 KIRFPMMPNNRSMNLSNTVAITVFEAWRQL 148 >gi|292489067|ref|YP_003531954.1| putative RNA methyltransferase [Erwinia amylovora CFBP1430] gi|292900195|ref|YP_003539564.1| tRNA/rRNA methyltransferase [Erwinia amylovora ATCC 49946] gi|291200043|emb|CBJ47168.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC 49946] gi|291554501|emb|CBA22048.1| putative RNA methyltransferase [Erwinia amylovora CFBP1430] gi|312173223|emb|CBX81478.1| putative RNA methyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 241 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A + Y + Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIAANPQYSSLNLAMAVQIIAYEVR 157 >gi|325287947|ref|YP_004263737.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489] gi|324323401|gb|ADY30866.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489] Length = 152 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 48/156 (30%), Gaps = 9/156 (5%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D N + + + P N+G + R+A I T ++ + + Sbjct: 3 DNFVNEYFGIGIQNGKTPENLGVLWRTAQNLGASFIFTIGNRYAKQACDTHNAVKSIPYY 62 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 + G + + D + + +LGAE GL + E Sbjct: 63 HYNTFNDFKNNIPVGTRIVGVELDDTAVDLETFEH----PRRCVYLLGAEDHGLSKEAIE 118 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + +LNV+ A ++ LY K Sbjct: 119 ESHFLVK---FKSTLSLNVAVAGSIVLYD--RQLGK 149 >gi|269962423|ref|ZP_06176773.1| RNA methyltransferase, TrmH family [Vibrio harveyi 1DA3] gi|269832919|gb|EEZ87028.1| RNA methyltransferase, TrmH family [Vibrio harveyi 1DA3] Length = 239 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 23/70 (32%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + E + +AL+ G E GL + + +LN++ Sbjct: 88 WPMLEPRECGEKFAVEGQKHPVALVFGRERTGLTNDELQKCHYHVCIPANPEYSSLNLAM 147 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 148 AVQTLSYEVR 157 >gi|213965150|ref|ZP_03393348.1| spou rrna methylase family protein [Corynebacterium amycolatum SK46] gi|213952264|gb|EEB63648.1| spou rrna methylase family protein [Corynebacterium amycolatum SK46] Length = 223 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ L+ G EG G+ + Q A + G +++N AA +A++ Sbjct: 161 LPERCLLLFGQEGPGVTEEAQRAADLTVSIAQFGSTRSINAGVAAGIAMHSWIR 214 >gi|261867573|ref|YP_003255495.1| TrmH family RNA methyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412905|gb|ACX82276.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 241 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N K+A++ G E GL + + +LN++ A + Y + Sbjct: 106 NGKVAIVFGRERVGLTNEELLKCHYHVTIPANPDYTSLNLAMAVQLIAYEVR 157 >gi|119945066|ref|YP_942746.1| RNA methyltransferase [Psychromonas ingrahamii 37] gi|119863670|gb|ABM03147.1| RNA methyltransferase, TrmH family, group 1 [Psychromonas ingrahamii 37] Length = 254 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 18/52 (34%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A Y + Sbjct: 106 KHPVALVFGRENSGLTNDELQKCHFHVFIPANPDYSSLNLAMAVQTLSYEVR 157 >gi|91225152|ref|ZP_01260374.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus 12G01] gi|91190095|gb|EAS76366.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus 12G01] Length = 215 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 24/70 (34%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + E + +AL+ G E GL + + + +LN++ Sbjct: 64 WPMLEPRECGEKFAVEGRKHPVALVFGRERTGLTNEELQKCHYHVCIPANPEYSSLNLAM 123 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 124 AVQTLSYEVR 133 >gi|223934212|ref|ZP_03626148.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591] gi|253752379|ref|YP_003025520.1| SpoU rRNA methylase family protein [Streptococcus suis SC84] gi|253754205|ref|YP_003027346.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7] gi|253756139|ref|YP_003029279.1| SpoU rRNA methylase family protein [Streptococcus suis BM407] gi|302024329|ref|ZP_07249540.1| SpoU rRNA methylase family protein [Streptococcus suis 05HAS68] gi|330833319|ref|YP_004402144.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis ST3] gi|223897128|gb|EEF63553.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591] gi|251816668|emb|CAZ52309.1| SpoU rRNA methylase family protein [Streptococcus suis SC84] gi|251818603|emb|CAZ56437.1| SpoU rRNA methylase family protein [Streptococcus suis BM407] gi|251820451|emb|CAR47147.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7] gi|292558982|gb|ADE31983.1| rRNA methyltransferase, TrmH family [Streptococcus suis GZ1] gi|319758784|gb|ADV70726.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis JS14] gi|329307542|gb|AEB81958.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis ST3] Length = 181 Score = 65.6 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 3/147 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + NL Sbjct: 17 IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDVRFYDNL 76 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPK-TQETATSMAH 253 + + G + K +++ + I + G E KGL +E Sbjct: 77 AEFMDYASKQGRVHLVSKFADKTYSDEDYNDGNIHYFLFGREDKGLPEDFMREHPEKAIR 136 Query: 254 LHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LNVSN A + +Y Sbjct: 137 IPMNDEHVRSLNVSNTACMIVYEALRQ 163 >gi|310764793|gb|ADP09743.1| tRNA/rRNA methyltransferase [Erwinia sp. Ejp617] Length = 241 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A + Y + Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVR 157 >gi|284928667|ref|YP_003421189.1| rRNA methylase, putative, group 3 [cyanobacterium UCYN-A] gi|284809126|gb|ADB94831.1| rRNA methylase, putative, group 3 [cyanobacterium UCYN-A] Length = 236 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 59/214 (27%), Positives = 102/214 (47%), Gaps = 13/214 (6%) Query: 58 SAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 AAL N R++ ++ ++ + V V Q + +I + HQG Sbjct: 1 MAALEND-RQLNRIWVTNKLRHDSRFSNLLRISKSKGAVVDEVSLQRLSQIT-NGSNHQG 58 Query: 114 LALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166 +A + +P TLD + ++++ D + DP N+GAI+R++ A C G+I + Sbjct: 59 IAAQVSPYSYYTLDRLITKAKQESDQPVIIIADGIVDPQNLGAIIRTSEAMGCQGLIIPQ 118 Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 R + S ++ +AK A+GALE P R+ NL AL+ + + GF G ++ K L + Sbjct: 119 RRAASITSSVAKVAAGALEFFPIARVINLNRALETLKAEGFWIYGTVAEGGKNLPNFDFS 178 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 I L++G+EG GL TQ + + + G Sbjct: 179 CAIGLVIGSEGNGLNLLTQRYCDELLSIPLEGKT 212 >gi|259907699|ref|YP_002648055.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96] gi|224963321|emb|CAX54806.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96] gi|283477553|emb|CAY73469.1| putative RNA methyltransferase [Erwinia pyrifoliae DSM 12163] Length = 241 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A + Y + Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVR 157 >gi|37521709|ref|NP_925086.1| methyltransferase [Gloeobacter violaceus PCC 7421] gi|35212707|dbj|BAC90081.1| glr2140 [Gloeobacter violaceus PCC 7421] Length = 246 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 17/47 (36%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 A + G E +GL + + +LN++ A + Y Sbjct: 107 AYVFGPEDRGLSNEELAHCQRTVQIPTGAAYPSLNLAQAVGICAYAL 153 >gi|146297844|ref|YP_001192435.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] gi|146152262|gb|ABQ03116.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] Length = 151 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 1/148 (0%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P+N G I R V + L +S H+ Sbjct: 1 MLNVVLVEPEIPNNTGNIGRLCVGTESRLHLIHPFGFVINDKNLKRSGLDYWVHLDVTEY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 N+ + +Q++ + S S+K + D L+ G E GL + Sbjct: 61 QNVEEWIQQIPDHSRVFLMS-SHSEKSYLENEFQDGDWLVFGKESVGLSAAFMARFENHL 119 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280 + M +I++ N++N+ A + + Sbjct: 120 TIPMSPLIRSFNIANSVAFVVGEAKRQI 147 >gi|77919150|ref|YP_356965.1| RNA methyltransferase [Pelobacter carbinolicus DSM 2380] gi|77545233|gb|ABA88795.1| RNA methyltransferase, TrmH family, group 1 [Pelobacter carbinolicus DSM 2380] Length = 244 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 22/52 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++A + G E KGL + + ++N++ + ++ LY T Sbjct: 109 GRVAWVFGREDKGLETSELDLCQRFVTIPTDDACPSMNLAQSVSICLYETSR 160 >gi|332292385|ref|YP_004430994.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] gi|332170471|gb|AEE19726.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] Length = 178 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 28/54 (51%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +K A++ G E KG++ + + ++ + G +LN+S +A V ++ + Sbjct: 122 EKYAVVFGNEVKGVQQEIVSLSNTVIEIPQVGTKHSLNISVSAGVVIWDLFSKL 175 >gi|172041466|ref|YP_001801180.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] gi|171852770|emb|CAQ05746.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] Length = 243 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 61/183 (33%), Gaps = 6/183 (3%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 P+ +D G R +L + +++ + NIG ++R+A A Sbjct: 59 DPELLDN--GDRRNVVDAYRYWKMDAIVADIDSRRHELHIAIENFENDANIGTVVRTANA 116 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F+ D + R + + LEH + A Q + S Sbjct: 117 FAVDTVHIVGRKRWNRRGAMVTDRYQHLEHHKTVAEVLDYAAEQDLAVVAVDNTPGSVPL 176 Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + L+ G EG G+ + Q A + G +++N AA +A++ Sbjct: 177 ET----AELPRRCLLLFGQEGPGVTEEAQRGARMTVSIAQFGSTRSINAGVAAGIAMHAW 232 Query: 277 QNH 279 Sbjct: 233 IRQ 235 >gi|304398597|ref|ZP_07380469.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB] gi|304353808|gb|EFM18183.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB] Length = 250 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 20/50 (40%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + + +LN++ A + Y + Sbjct: 108 PVALVFGRERVGLTNEELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVR 157 >gi|251792921|ref|YP_003007647.1| TrmH family RNA methyltransferase [Aggregatibacter aphrophilus NJ8700] gi|247534314|gb|ACS97560.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter aphrophilus NJ8700] Length = 244 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N K+A++ G E GL + + +LN++ A + Y + Sbjct: 106 NGKVAIVFGRERVGLTNEELLKCHYHVTIPANPDYASLNLAMAVQLISYEIR 157 >gi|258655261|ref|YP_003204417.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM 44233] gi|258558486|gb|ACV81428.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM 44233] Length = 224 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E GL + + A + + G +++NV AA +A++ Sbjct: 162 LPRDCLLLFGGESAGLSEQARAGAAATVSIAQFGSTRSINVGVAAGIAMHAWIRR 216 >gi|258573751|ref|XP_002541057.1| predicted protein [Uncinocarpus reesii 1704] gi|237901323|gb|EEP75724.1| predicted protein [Uncinocarpus reesii 1704] Length = 582 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 9/60 (15%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSNAAAVALYITQN 278 L+LG+EG GL + A + + P + +LNVS A+A+ Sbjct: 491 PCVLMLGSEGYGLSKYLKRKADAFVAIPGAQAAGLSDDPAGVDSLNVSVASALLCQEFLR 550 >gi|320180527|gb|EFW55458.1| tRNA:Cm32/Um32 methyltransferase [Shigella boydii ATCC 9905] Length = 245 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + + +LN++ A V Y + Sbjct: 108 PVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|295097922|emb|CBK87012.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 241 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + + +LN++ A V Y + Sbjct: 108 PVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|294945420|ref|XP_002784671.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983] gi|239897856|gb|EER16467.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983] Length = 222 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 49/159 (30%), Gaps = 2/159 (1%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 L R + +++ +V N G +LRSA AF + E A+ Sbjct: 1 MASPVDLPPPRPWKSYLLICNVGKRQNWGQLLRSATAFGVTEVFVVGAKKMKELALFGNQ 60 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 + + K + + S+ + +LG EG G Sbjct: 61 GTTLHATFEFFDTIAEAKEELKRRGITLCGVEIHPSSEPIQDM-HWRGDTCFMLGNEGTG 119 Query: 240 LRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALYITQ 277 + K ++ +LNV+ A ++ L+ Sbjct: 120 MTDKQIAACDQFTYIQQYTKATASLNVAVAGSIVLHHFA 158 >gi|206578299|ref|YP_002237115.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae 342] gi|288934076|ref|YP_003438135.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola At-22] gi|290508272|ref|ZP_06547643.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. 1_1_55] gi|206567357|gb|ACI09133.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae 342] gi|288888805|gb|ADC57123.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola At-22] gi|289777666|gb|EFD85663.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. 1_1_55] Length = 244 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + + +LN++ A V Y + Sbjct: 108 PVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|163849091|ref|YP_001637135.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl] gi|222527064|ref|YP_002571535.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl] gi|163670380|gb|ABY36746.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus J-10-fl] gi|222450943|gb|ACM55209.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl] Length = 239 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 10/158 (6%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS----------PSESAVLAKSA 180 + ++++L DP NIGA++R+ + C + VLA Sbjct: 1 MNDIIVILHQPRDPRNIGAVVRAMLNTGCHHLRLVDPCPFDPATISAVAHRPDPVLANLT 60 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 A I L + H + + + ++ +A++ G+EG GL Sbjct: 61 VHAHLSEAIADIRYLVGTSDRPHPGLPWRNDVRQWANETRQRAASTGPVAILFGSEGNGL 120 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L M LN++ A + LY Q Sbjct: 121 SRDELVLCQEILGLPMASDYPVLNLAQAVLLVLYELQQ 158 >gi|119476391|ref|ZP_01616742.1| RNA methyltransferase TrmH, group 1 [marine gamma proteobacterium HTCC2143] gi|119450255|gb|EAW31490.1| RNA methyltransferase TrmH, group 1 [marine gamma proteobacterium HTCC2143] Length = 226 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + + + E+ +AL+ G E +GL + + ++ +LN+ Sbjct: 63 PWPLVNPRVCAERVYPELTEHPVALVFGREDRGLTNEELQVCNLHVNIPASEDYTSLNLG 122 Query: 267 NAAAVALYITQ 277 A V Y + Sbjct: 123 MAVQVVTYELR 133 >gi|113867235|ref|YP_725724.1| rRNA methyltransferase [Ralstonia eutropha H16] gi|113526011|emb|CAJ92356.1| rRNA methyltransferase [Ralstonia eutropha H16] Length = 299 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A + G E GL + E ++ H+ +LN++ A + Y + Sbjct: 155 SGGVAFVFGNERYGLPNEVVERCNAVTHIPANPAYTSLNLAQAVQLIAYEMR 206 >gi|239980742|ref|ZP_04703266.1| rRNA methylase [Streptomyces albus J1074] gi|291452600|ref|ZP_06591990.1| rRNA methyltransferase [Streptomyces albus J1074] gi|291355549|gb|EFE82451.1| rRNA methyltransferase [Streptomyces albus J1074] Length = 261 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 74/235 (31%), Gaps = 15/235 (6%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD----WDANLPHPFPVKTVPPQTIDKI 104 + L G H + AL + L A + A +L D + V +T+ + Sbjct: 28 VLLEGFHALKHALRFGAVVPVALCADRAAALQLAAELAPDLEGALAGLLVEVDAETLRGL 87 Query: 105 VGKEAVHQGLALETAPLLSPTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 V + AL P ++VLD N GA++R A F G+ Sbjct: 88 VARPHPTGVAALAERPAPLAVEAALRGARRTPVVVLDQPRHLGNAGAVVRLAAGFGASGV 147 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 +TT P V+ A ++ + + Sbjct: 148 VTTGPLDPWHPTVVRGGAGLHFATAVAP---------LEVPELPAGPLFALDPEGADIRG 198 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D L G+E GL + + A + L M + + N++ + + L+ Sbjct: 199 LTLPDDALLAFGSERHGLTAELRARADHLVALPMRPQVSSYNLATSVGMTLFHWA 253 >gi|282897430|ref|ZP_06305432.1| RNA methyltransferase TrmH, group 1 [Raphidiopsis brookii D9] gi|281198082|gb|EFA72976.1| RNA methyltransferase TrmH, group 1 [Raphidiopsis brookii D9] Length = 245 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 20/54 (37%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 LI G E +GL + A + + +LN++ A ++ Y Sbjct: 113 KPGGLIFGREDRGLTNQEINYAQKLVFIPTSPEYISLNLATAVSICCYELSQSL 166 >gi|254513994|ref|ZP_05126055.1| RNA methyltransferase TrmH, group 1 [gamma proteobacterium NOR5-3] gi|219676237|gb|EED32602.1| RNA methyltransferase TrmH, group 1 [gamma proteobacterium NOR5-3] Length = 254 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 18/51 (35%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++A++ G E GL + +LN++ A + Y Sbjct: 107 QGEVAILFGREDNGLSNDELMRCNLHLAIPTSEAYNSLNLAMAVQIVCYEL 157 >gi|121998574|ref|YP_001003361.1| RNA methyltransferase [Halorhodospira halophila SL1] gi|121589979|gb|ABM62559.1| RNA methyltransferase, TrmH family, group 1 [Halorhodospira halophila SL1] Length = 249 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A + G E GL + + + +LNV+ + + + + Sbjct: 108 DGDLAWVFGRERTGLTNAELDHCHYLVQIPTDPDYSSLNVAQSVQLVAWELR 159 >gi|261363634|ref|ZP_05976517.1| RNA methyltransferase, TrmH family, group 1 [Neisseria mucosa ATCC 25996] gi|288568164|gb|EFC89724.1| RNA methyltransferase, TrmH family, group 1 [Neisseria mucosa ATCC 25996] Length = 271 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +AL+ G E GL + + + ++ +LN++ A V Y + Sbjct: 140 VALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190 >gi|297539147|ref|YP_003674916.1| TrmH family RNA methyltransferase [Methylotenera sp. 301] gi|297258494|gb|ADI30339.1| RNA methyltransferase, TrmH family, group 1 [Methylotenera sp. 301] Length = 257 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 22/52 (42%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + IAL+ G E GL + +A + +LN++ A V Y + Sbjct: 122 SQPIALVFGTEMSGLSNAELDCCQLLAMIPANPEYSSLNLAAAVQVMCYEMR 173 >gi|228476565|ref|ZP_04061247.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus salivarius SK126] gi|228251760|gb|EEK10825.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus salivarius SK126] Length = 169 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 48/146 (32%), Gaps = 2/146 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + NL Sbjct: 6 IVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDNL 65 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 D + K + +D E + G E GL +E + Sbjct: 66 ADFMSKNQDGRLHLVTKFADKTYSDENYADGGDHYFMFGREDTGLPEDFMREHPEKAIRI 125 Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279 M +++LNVSN + +Y Sbjct: 126 PMNDEHVRSLNVSNTVCMIVYEALRQ 151 >gi|219847182|ref|YP_002461615.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485] gi|219541441|gb|ACL23179.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM 9485] Length = 235 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 26/77 (33%) Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 H + + + + +AL+ G E GL + + L + Sbjct: 82 PHLNLPWRNDVRQWAVELHRRATVAGPVALLFGPEDNGLSREELSRCHEIIGLPINPAYP 141 Query: 262 ALNVSNAAAVALYITQN 278 LN++ A + LY Q Sbjct: 142 TLNLAQAVLLILYELQQ 158 >gi|15669668|ref|NP_248481.1| hypothetical protein MJ_1476 [Methanocaldococcus jannaschii DSM 2661] gi|41018437|sp|Q58871|Y1476_METJA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MJ1476 gi|1592115|gb|AAB99481.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 230 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 22/52 (42%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 I ++ G E GLR + + + + +N+S+A AV LY Sbjct: 107 KGNIGIVFGREDDGLRNEEIDKCDLLVSIPTSEKYPIMNLSHAVAVILYEIY 158 >gi|257888171|ref|ZP_05667824.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733] gi|257896938|ref|ZP_05676591.1| RNA methyltransferase TrmH [Enterococcus faecium Com12] gi|257824225|gb|EEV51157.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733] gi|257833503|gb|EEV59924.1| RNA methyltransferase TrmH [Enterococcus faecium Com12] Length = 168 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + + ++ L ++ + Sbjct: 1 MMNHIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 S+L L + I + E ++ + G E GL +E Sbjct: 61 HSDLEAFLTFLGDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPEAFMRENEEK 120 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 121 CLRIPMNDEHVRSLNLSNTAAMIVYEALRQ 150 >gi|108758130|ref|YP_630275.1| RNA methyltransferase [Myxococcus xanthus DK 1622] gi|108462010|gb|ABF87195.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622] Length = 167 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKALNVSNAAAVALYITQNH 279 + + L+ G+E GL P+ E T + M ++LN+S + + Y Sbjct: 94 YEARFEEGDHLVFGSEVSGLAPEVMEGGTGTAVTIPMLEDRRSLNLSTSVGIGTYEALRQ 153 >gi|149372809|ref|ZP_01891830.1| SpoU rRNA methylase family protein [unidentified eubacterium SCB49] gi|149354506|gb|EDM43071.1| SpoU rRNA methylase family protein [unidentified eubacterium SCB49] Length = 170 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 IALI+G+E G+ + S+ H+ M G ++NV + +ALY Sbjct: 117 IALIIGSEKHGISEDILQYLDSVYHITMFGNNSSMNVIQSTGIALYEITKKII 169 >gi|66808737|ref|XP_638091.1| hypothetical protein DDB_G0285499 [Dictyostelium discoideum AX4] gi|60466535|gb|EAL64587.1| hypothetical protein DDB_G0285499 [Dictyostelium discoideum AX4] Length = 1677 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFA 281 K L+LG E +G+ + + GII++LNV + ++ ++ + Sbjct: 1617 FEFPQKSVLVLGKEKEGIPTEFINLLDKCIEIPQLGIIRSLNVHVSGSLMIWDYFRQQLN 1676 Query: 282 K 282 K Sbjct: 1677 K 1677 >gi|16331860|ref|NP_442588.1| hypothetical protein slr0120 [Synechocystis sp. PCC 6803] gi|1208490|dbj|BAA10658.1| slr0120 [Synechocystis sp. PCC 6803] Length = 240 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 20/51 (39%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K AL+ G E GL + A + + +LN+S A V Y Sbjct: 98 KSALVFGREDSGLTNEELNQAHRFVRIPVHPQYPSLNLSQAVMVCTYELYQ 148 >gi|89072687|ref|ZP_01159252.1| putative RNA methyltransferase, TrmH family protein [Photobacterium sp. SKA34] gi|89051507|gb|EAR56961.1| putative RNA methyltransferase, TrmH family protein [Photobacterium sp. SKA34] Length = 246 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + ++ +LN++ A Y + Sbjct: 107 HPVAILFGRERTGLTNEELQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVR 157 >gi|94989816|ref|YP_597916.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270] gi|94543324|gb|ABF33372.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270] Length = 194 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 3/155 (1%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D V+ ++ +VL P N G I R+ A + I P + + ++ + Sbjct: 23 DKVKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDK 82 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQ 245 + +L + + H + ++ D + G E GL + Sbjct: 83 LELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYAD-GDSHYFLFGREDTGLPEDFMR 141 Query: 246 ETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 E A + M +++LNVSN + +Y Sbjct: 142 EHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQ 176 >gi|256811397|ref|YP_003128766.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus fervens AG86] gi|256794597|gb|ACV25266.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus fervens AG86] Length = 227 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 KI ++ G E GLR + + + + +N+S+A AV LY Sbjct: 104 KGKIGIVFGREDDGLRNEDIDKCDLLVSIPTSEKYPIMNLSHAVAVILYEIY 155 >gi|325684460|gb|EGD26624.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 185 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 231 LILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G E GL ++ A + M I+A N+SN+AA+ ++ Sbjct: 102 FVFGRETTGLLETFMRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQ 151 >gi|291618423|ref|YP_003521165.1| YfhQ [Pantoea ananatis LMG 20103] gi|291153453|gb|ADD78037.1| YfhQ [Pantoea ananatis LMG 20103] gi|327394816|dbj|BAK12238.1| tRNA/rRNA methyltransferase YfhQ [Pantoea ananatis AJ13355] Length = 248 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A + Y + Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVR 157 >gi|126726856|ref|ZP_01742695.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium HTCC2150] gi|126703814|gb|EBA02908.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium HTCC2150] Length = 157 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 4/153 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + + +VL P N GAI R+ VA + I+ + + ++ + +H+ Sbjct: 1 MTKPNMKIVLVTPEIPWNTGAIGRTCVALGLELILIKPLGFSLDEKAVRRAGTDYWKHVD 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-T 247 + L + + + + + LI G E GL + Sbjct: 61 LTLYDDWQSFLDAHNPAPESMYFFEEHGAQTIYEPEYDPNGYLIFGCESAGLPRAVLDGR 120 Query: 248 ATSMAHLHM-PGIIKALNVS-NAAAVALYITQN 278 + L M ++++LN++ A AV Y Sbjct: 121 DDQVFKLPMLSPLVRSLNLANVATAVV-YQAMR 152 >gi|329296468|ref|ZP_08253804.1| putative rRNA methylase [Plautia stali symbiont] Length = 142 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 6/56 (10%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L+ G E +GL P+ L I+++N+SNA +V +Y Sbjct: 87 YQPGDYLLFGPESRGLPPEILNA------LPAEQKIRSMNLSNAVSVVVYEAWRQL 136 >gi|159028241|emb|CAO88051.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 266 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 19/49 (38%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ALI G E +GL A + +LN++ A AV Y Sbjct: 119 ALIFGPEDRGLSNSELNHAQRFVGIPANPQYSSLNLAQAVAVCSYELYQ 167 >gi|313620923|gb|EFR92097.1| RNA methyltransferase, TrmH family, group 3 [Listeria innocua FSL S4-378] gi|313625369|gb|EFR95160.1| RNA methyltransferase, TrmH family, group 3 [Listeria innocua FSL J1-023] Length = 43 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 18/38 (47%) Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +E + HL M G + +LN S AA++ LY Sbjct: 1 LVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYRKR 38 >gi|307700467|ref|ZP_07637506.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16] gi|307614452|gb|EFN93682.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16] Length = 222 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +I G E G+ P TQE + + G ++LNV +AAA++++ Sbjct: 160 CELPRRCLMIFGEESSGITPATQEILDRLIQITQYGSTRSLNVGHAAAISMWAWVR 215 >gi|218781768|ref|YP_002433086.1| tRNA/rRNA methyltransferase (SpoU) [Desulfatibacillum alkenivorans AK-01] gi|218763152|gb|ACL05618.1| tRNA/rRNA methyltransferase (SpoU) [Desulfatibacillum alkenivorans AK-01] Length = 158 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 57/149 (38%), Gaps = 2/149 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YI 190 + +VL N G I R+ + D + +S+ + ++ E + + Sbjct: 1 MERHIVLVEPEIHWNTGNIGRTCLGAGADLHLIKPLGFSLDSSHVKRAGLDYWEKVRLHT 60 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 S + + ++ + ++ + ++ L+LGAE +GL + Sbjct: 61 WGSFDEFSAKMQNAPDETLLFSKLGARPFWDMPSHMTRLFLVLGAETRGLPQGVLDQYPG 120 Query: 251 MA-HLHMPGIIKALNVSNAAAVALYITQN 278 H+ + I++LN+S A + LY + Sbjct: 121 NVYHVPITNEIRSLNLSTTAGIVLYESMR 149 >gi|284931509|gb|ADC31447.1| SpoU class rRNA methylase [Mycoplasma gallisepticum str. F] Length = 163 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 6/150 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL DP N G I RS V F+ + ++ +H+ + ++ Sbjct: 7 VVLYQPQDPRNAGNIARSCVGFNATLHLIHPFGFFITDERFKRAGLDYWDHLNLKQYADF 66 Query: 196 TDALQKMHSW-----GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT 249 D +++ + + E + +I L+ G E GL + + Sbjct: 67 DDFIKQNQIDDNLFLFTKKANNYLSNINFKEYLDHDQRIYLVFGQETNGLPEQLLNKYQN 126 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ + M I++ N++N+ ALY Sbjct: 127 NLVKIPMHNAIRSFNLANSVICALYELSRQ 156 >gi|126659046|ref|ZP_01730187.1| RNA methyltransferase TrmH, group 1 [Cyanothece sp. CCY0110] gi|126619703|gb|EAZ90431.1| RNA methyltransferase TrmH, group 1 [Cyanothece sp. CCY0110] Length = 248 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 20/51 (39%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ALI G E +GL + A + +LN++ A AV Y Sbjct: 111 NTALIFGPEDRGLNNEELSYAQRFVCIPANSDYSSLNLAQAVAVCSYELYQ 161 >gi|159472665|ref|XP_001694465.1| predicted protein [Chlamydomonas reinhardtii] gi|158276689|gb|EDP02460.1| predicted protein [Chlamydomonas reinhardtii] Length = 233 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 4/58 (6%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSM----AHLHMPGIIKALNVSNAAAVALYIT 276 ++A+++G E G+ + E A L M G + N+S A A+ L+ Sbjct: 70 IQLPPRLAIVMGREADGVSAEMLEAANRCTGLRVCLPMYGYNDSFNLSVATAMVLHHL 127 >gi|149196494|ref|ZP_01873548.1| RNA methyltransferase TrmH, group 3 [Lentisphaera araneosa HTCC2155] gi|149140174|gb|EDM28573.1| RNA methyltransferase TrmH, group 3 [Lentisphaera araneosa HTCC2155] Length = 166 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K L++GAE +GL + + + G+ + NV++A ++A+Y Sbjct: 104 HDFDFPHKCVLVVGAEREGLSQDCLDCLDYTVEIPVWGLPYSYNVASATSLAVYEYCRQ 162 >gi|209518051|ref|ZP_03266882.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. H160] gi|209501555|gb|EEA01580.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. H160] Length = 276 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN+ A V Y + Sbjct: 129 IALVFGNERVGLSNEDVERCSAIAHIPANPAYSSLNLGQAVQVLAYELR 177 >gi|163791007|ref|ZP_02185429.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7] gi|159873746|gb|EDP67828.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7] Length = 169 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 3/153 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + L P N G I R+ A + + ++ L ++ + Sbjct: 1 MTNHIALFEPQIPANTGNIARTCAATNTHLHLIEPLGFQTDDKHLKRAGLDYWNEVHITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPK-TQETAT 249 NL ++ + I + ++ + + G E GL + +E Sbjct: 61 HKNLAAFMEVAKNGQLHLITKFGNRVYSDVDYAAIEEDHYFLFGKETTGLPEEFMREHEE 120 Query: 250 SMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LN+SN AA+ ++ Sbjct: 121 DCLRIPMNDEHVRSLNLSNTAAILIFEALRQQN 153 >gi|67523001|ref|XP_659561.1| hypothetical protein AN1957.2 [Aspergillus nidulans FGSC A4] gi|40745966|gb|EAA65122.1| hypothetical protein AN1957.2 [Aspergillus nidulans FGSC A4] gi|259487316|tpe|CBF85894.1| TPA: RNA methyltransferase, TrmH family family (AFU_orthologue; AFUA_4G13450) [Aspergillus nidulans FGSC A4] Length = 617 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 66/348 (18%), Positives = 115/348 (33%), Gaps = 85/348 (24%) Query: 9 SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN------ 62 EK S + H+ N K+ +T+ +YG V AAL Sbjct: 155 EEKRRSRRIEHHKPTEENPERVKQHVWVPPTIPYTTSASEF-IYGTTAVEAALRCCKRQL 213 Query: 63 ---------------NPSRKIFQLLATKNALARLDW----------DANLPHPFPVKTVP 97 R + +L +KN +L + A PH V V Sbjct: 214 YKLYLYQTAGEEELSADKRVLRKLALSKNVKVKLAFGEWNRLLDKMSAGRPHNGCVLEVS 273 Query: 98 --------------------PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137 + +EA G S T ++++ Sbjct: 274 PLPRTPIQALRPVQLGDGEFKVELAPQTREEAKVNGTNDCIKINNSYT-QQQIRYPVVVL 332 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 L+ V D N+G+I+RSA D I+ R+S S V K+++GA E++ + + N D Sbjct: 333 LEGVVDTGNLGSIIRSAYYLGVDAIVFAGRHSAPLSPVTIKASAGAAENMTLLDVQNEVD 392 Query: 198 ALQKMHSWGFQTIGLSSD--------------------SKKPLEQEIKNDKIALILGAEG 237 +++ + G++ ++ + I +++G EG Sbjct: 393 FIKRSQANGWRFYAADVPKTGATYLEPGALQPPGSAVANEGHPDALIGQSPSVIMMGYEG 452 Query: 238 KGLRPKTQETATSMAHLHM------------PGIIKALNVSNAAAVAL 273 GL + A S+ + P + +LNVS AAA+ + Sbjct: 453 SGLSNHIKGRADSIVSIPGARLLPGVGAASDPARVDSLNVSVAAALLM 500 >gi|254451585|ref|ZP_05065022.1| SpoU rRNA Methylase family [Octadecabacter antarcticus 238] gi|198265991|gb|EDY90261.1| SpoU rRNA Methylase family [Octadecabacter antarcticus 238] Length = 152 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P+N GAI R+ VA + I+ + + ++ +H+ + Sbjct: 3 LVLVTPEIPYNTGAIGRTCVALELELILIRPYGFSLDEKAVRRAGQDYWKHVQLSEYDSW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA-HL 254 D + + + L+ G E KGL + HL Sbjct: 63 QDFMDDRKPPRDSLYFFEEHGAQSVYAPDYQHDAYLVFGCESKGLPATVLDGMDDRVFHL 122 Query: 255 HMPGI-IKALNVS-NAAAVALYITQN 278 M +++LN++ A AV Y Sbjct: 123 PMRNPLVRSLNLANVATAVI-YQAMR 147 >gi|316978725|gb|EFV61669.1| putative tRNA/rRNA methyltransferase [Trichinella spiralis] Length = 186 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 72/202 (35%), Gaps = 25/202 (12%) Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL---MVLDHVND 143 LP + ++ ++ G+ + +NS +L ++ D + D Sbjct: 3 LPDEVDKVRISTHRMNTWSLLDSPP-GIMAVAKKPTYEEISKSKNSHILPLTVICDGLKD 61 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G+++RS A C I+ + +SASGA +IP + L + Sbjct: 62 PGNVGSLIRSLAAMGCRRILAVTGCCYFWEVKVLRSASGAHFYIPVYEDISWNRMLDYLP 121 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSMAHLHMPGI 259 F+ I L++G+E GL + + A H+ M Sbjct: 122 HDFFRDTE-----------------IVLVVGSERTGLSEQALRFGEQHAGKRLHIPMTND 164 Query: 260 IKALNVSNAAAVALYITQNHFA 281 LN + AA + + + + Sbjct: 165 KFCLNSAVAATLIAFEIRKQMS 186 >gi|313668483|ref|YP_004048767.1| SpoU methylase family protein [Neisseria lactamica ST-640] gi|313005945|emb|CBN87402.1| SpoU methylase family protein [Neisseria lactamica 020-06] Length = 271 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +AL+ G E GL + + + ++ +LN++ A V Y + Sbjct: 140 VALVFGNETFGLSIEEAQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190 >gi|300772007|ref|ZP_07081877.1| SpoU family RNA methylase [Sphingobacterium spiritivorum ATCC 33861] gi|300760310|gb|EFK57136.1| SpoU family RNA methylase [Sphingobacterium spiritivorum ATCC 33861] Length = 177 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281 + K A + G E G+ + + + + G + N+S + L+ +N F Sbjct: 120 DQKYAFVFGNEVHGVDEEIMKISDGCLEIPQFGTKHSFNISVTIGIVLWDFVVKNRFN 177 >gi|227536035|ref|ZP_03966084.1| SpoU rRNA methylase family protein [Sphingobacterium spiritivorum ATCC 33300] gi|227243932|gb|EEI93947.1| SpoU rRNA methylase family protein [Sphingobacterium spiritivorum ATCC 33300] Length = 177 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281 + K A + G E G+ + + + + G + N+S + L+ +N F Sbjct: 120 DQKYAFVFGNEVHGVDEEIMKISDGCLEIPQFGTKHSFNISVTIGIVLWDFVVKNRFN 177 >gi|309378837|emb|CBX22542.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 272 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 21/51 (41%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +AL+ G E GL + + ++ +LN++ A V Y + Sbjct: 140 VALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190 >gi|261252065|ref|ZP_05944638.1| tRNA:Cm32/Um32 methyltransferase [Vibrio orientalis CIP 102891] gi|260935456|gb|EEX91445.1| tRNA:Cm32/Um32 methyltransferase [Vibrio orientalis CIP 102891] Length = 241 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 24/70 (34%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + E + +AL+ G E GL +T + +LN++ Sbjct: 88 WPMLEPRECGQKFVSEGQESPVALVFGRERTGLTNDELQTCHYHVCIPANPEYSSLNLAM 147 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 148 AVQTLSYEIR 157 >gi|269214401|ref|ZP_05986486.2| RNA methyltransferase, TrmH family, group 1 [Neisseria lactamica ATCC 23970] gi|269209997|gb|EEZ76452.1| RNA methyltransferase, TrmH family, group 1 [Neisseria lactamica ATCC 23970] Length = 238 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 21/51 (41%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +AL+ G E GL + + ++ +LN++ A V Y + Sbjct: 106 VALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 156 >gi|145507310|ref|XP_001439610.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124406805|emb|CAK72213.1| unnamed protein product [Paramecium tetraurelia] Length = 1396 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + K L+LG E GL + E + + G+I++LNV +A + ++ Sbjct: 1337 NFKFDKKTVLVLGREKTGLPIEYIELMDNCVEIPQYGVIRSLNVHISAVICVWQYVQQ 1394 >gi|332686349|ref|YP_004456123.1| tRNA (cytosine 34-2'-O-)-methyltransferase [Melissococcus plutonius ATCC 35311] gi|332370358|dbj|BAK21314.1| tRNA (cytosine 34-2'-O-)-methyltransferase [Melissococcus plutonius ATCC 35311] Length = 168 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R+ A + + ++ L ++ + Sbjct: 1 MKNHIVLFEPQIPANTGNIARTCAATNTALHLIEPLGFSTDDKHLKRAGLDYWSKVEITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS- 250 NL L ++ I ++ + + I G E GL Sbjct: 61 YENLPSFLNELGDKPLHLITKFANQIYSEINYDDDQEHYFIFGKETTGLPETFMRQNKEK 120 Query: 251 MAHLHMPGI-IKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 121 CLRIPMNDQHVRSLNLSNTAALVIYEALRQ 150 >gi|54307943|ref|YP_128963.1| TrmH family RNA methyltransferase [Photobacterium profundum SS9] gi|46912369|emb|CAG19161.1| putative RNA methyltransferase, TrmH family [Photobacterium profundum SS9] Length = 243 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + ++ +LN++ A Y + Sbjct: 107 HPVAILFGRERTGLTNEELQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVR 157 >gi|300704468|ref|YP_003746071.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum CFBP2957] gi|299072132|emb|CBJ43464.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum CFBP2957] Length = 287 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL E + H+ +LN+S A + Y + Sbjct: 138 VAFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVR 186 >gi|281204193|gb|EFA78389.1| anaphase promoting complex subunit 3 [Polysphondylium pallidum PN500] Length = 1113 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 62/216 (28%), Gaps = 10/216 (4%) Query: 67 KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS--- 123 I +L + + + +DK+ + Sbjct: 842 IIDKLYLEDEIDNQDISRYRELSRIARPVLSDERLDKLDSVLRSRTDRVAIVCDNVKTTG 901 Query: 124 ------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 + +A+ + ++ D P N + + T Sbjct: 902 NVAAIIRSCEAMGIQHIHVIDDQPYTPFN-DISKGTEKWVTVHRHHTPLDCVDYLKQQRY 960 Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 + S L + + + T S S+ + + N++IA++ G E Sbjct: 961 QIWSSDLCEGAIRFDNLVKTLPATTTTTSTTTTTTSIISQNDNDNDDNNNRIAIVFGNEK 1020 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 G+ + + L M G++++ NVS + + L Sbjct: 1021 SGVTEDMKILSDKRIFLPMYGMVQSFNVSVSVGMTL 1056 >gi|207743497|ref|YP_002259889.1| trna/rrna methyltransferase protein [Ralstonia solanacearum IPO1609] gi|206594895|emb|CAQ61822.1| trna/rrna methyltransferase protein [Ralstonia solanacearum IPO1609] Length = 287 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL E + H+ +LN+S A + Y + Sbjct: 138 VAFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVR 186 >gi|207722898|ref|YP_002253332.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2] gi|206588082|emb|CAQ18662.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2] Length = 287 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL E + H+ +LN+S A + Y + Sbjct: 138 VAFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVR 186 >gi|169606800|ref|XP_001796820.1| hypothetical protein SNOG_06449 [Phaeosphaeria nodorum SN15] gi|160707082|gb|EAT86280.2| hypothetical protein SNOG_06449 [Phaeosphaeria nodorum SN15] Length = 283 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-----IIKALNVSNAAAVALYI 275 + L++GAEG GLR A + + +LNVS AA++ Y Sbjct: 206 HCPVAEHPTILMMGAEGTGLRDSLLNLAHYKVGIKHGREVDEIGVDSLNVSVAASILSYE 265 Query: 276 TQN 278 Sbjct: 266 MLQ 268 >gi|118431106|ref|NP_147324.2| hypothetical protein APE_0555.1 [Aeropyrum pernix K1] gi|116062431|dbj|BAA79523.2| conserved hypothetical protein [Aeropyrum pernix K1] Length = 243 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +A++ G E GL + + + +LN+SNAAA+ LY Sbjct: 104 PGTVAIVFGRESVGLTRGEIALCSLYSSIPASPRYPSLNLSNAAAIYLYEVYKAR 158 >gi|72080482|ref|YP_287540.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448] Length = 146 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 11/95 (11%), Positives = 25/95 (26%), Gaps = 1/95 (1%) Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + QK + + + I + G E G+ + + Sbjct: 33 HKNWQNFSEKYGQKNLFFITRYGQKLYTEVDFYTEIETKKDIFFVFGRESTGIPIEILKK 92 Query: 248 ATS-MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M ++LN++N + Y Sbjct: 93 NKEKCLRIPMIAKARSLNLANTVVIIAYEFHRQLN 127 >gi|50913684|ref|YP_059656.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394] gi|71902967|ref|YP_279770.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180] gi|94987942|ref|YP_596043.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429] gi|94991826|ref|YP_599925.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096] gi|94993702|ref|YP_601800.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750] gi|50902758|gb|AAT86473.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394] gi|71802062|gb|AAX71415.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180] gi|94541450|gb|ABF31499.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429] gi|94545334|gb|ABF35381.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096] gi|94547210|gb|ABF37256.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750] Length = 194 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 3/155 (1%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D V+ ++ +VL P N G I R+ A + I P + + ++ + Sbjct: 23 DKVKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDK 82 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQ 245 + +L + + H + ++ D + G E GL + Sbjct: 83 LELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYAD-GDSHYFLFGREDTGLPEDFMR 141 Query: 246 ETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 E A + M +++LNVSN + +Y Sbjct: 142 EHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQ 176 >gi|83748230|ref|ZP_00945256.1| RRNA methylase, SpoU family [Ralstonia solanacearum UW551] gi|83725071|gb|EAP72223.1| RRNA methylase, SpoU family [Ralstonia solanacearum UW551] Length = 326 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL E + H+ +LN+S A + Y + Sbjct: 177 VAFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVR 225 >gi|229823128|ref|ZP_04449197.1| hypothetical protein GCWU000282_00425 [Catonella morbi ATCC 51271] gi|229787294|gb|EEP23408.1| hypothetical protein GCWU000282_00425 [Catonella morbi ATCC 51271] Length = 175 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 6/153 (3%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + + L P N G I R+ A + + ++ +L ++ EH+ Sbjct: 1 MKNHIALYQPLMPANTGNISRTCAATNTPLHLIKPLGFSTDDKMLKRAGLDYWEHVEVHY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQE--T 247 +L D L + I + +N + + G E GL E Sbjct: 61 HESLEDFLAFVGERPLYLITKFAPRIYCQADLAQNSAGEQFFLFGKETTGLPADLMEERK 120 Query: 248 ATSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279 A + M +++LN+SN A + +Y Sbjct: 121 AD-CLRIPMNDQHVRSLNLSNTANIVIYEALRQ 152 >gi|159903675|ref|YP_001551019.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9211] gi|159888851|gb|ABX09065.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9211] Length = 246 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 D IA+I G E +GL + + A + L +LN+S+A A+ L+ + K Sbjct: 110 KDPIAIIFGREDRGLSNQELQLAQKVITLPSSLTYPSLNLSHAVAIILHDLIRYSQK 166 >gi|261414776|ref|YP_003248459.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371232|gb|ACX73977.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp. succinogenes S85] Length = 250 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 64/151 (42%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + Q +++ ++ N+G+I+RS F +G+ + + + +A G E IP Sbjct: 98 KPIQFAVLVHNLRSAFNVGSIIRSTDCFGLEGVHLSGYSCSPDHVTVKSAARGCQEWIPI 157 Query: 190 IRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R + D ++ + + + +K ++LG E G+ P+ A Sbjct: 158 KRWDSPFDCIKWHKENGYEIIALETGEDIPSINNVKWPEKGLIVLGNEELGIAPEIMAEA 217 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 T + M G ++NV+ A A+ + +++ Sbjct: 218 TMKVTIPMAGRKASMNVAGAFAIMAFCLRSN 248 >gi|213863204|ref|ZP_03386459.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 80 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A V Y + Sbjct: 10 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 61 >gi|302326903|gb|ADL26104.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 241 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 64/151 (42%), Gaps = 1/151 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + Q +++ ++ N+G+I+RS F +G+ + + + +A G E IP Sbjct: 89 KPIQFAVLVHNLRSAFNVGSIIRSTDCFGLEGVHLSGYSCSPDHVTVKSAARGCQEWIPI 148 Query: 190 IRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R + D ++ + + + +K ++LG E G+ P+ A Sbjct: 149 KRWDSPFDCIKWHKENGYEIIALETGEDIPSINNVKWPEKGLIVLGNEELGIAPEIMAEA 208 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 T + M G ++NV+ A A+ + +++ Sbjct: 209 TMKVTIPMAGRKASMNVAGAFAIMAFCLRSN 239 >gi|156936922|ref|YP_001434718.1| tRNA/rRNA methyltransferase (SpoU) [Ignicoccus hospitalis KIN4/I] gi|156565906|gb|ABU81311.1| tRNA/rRNA methyltransferase (SpoU) [Ignicoccus hospitalis KIN4/I] Length = 228 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +++ L+ G E GL + + ++ H+ +N+S+A AV L+ Sbjct: 102 PERLTLVFGRESVGLTREELKECDALLHVPASPQYPVMNLSHAVAVVLWEVWKQ 155 >gi|315037884|ref|YP_004031452.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus amylovorus GRL 1112] gi|325956357|ref|YP_004291769.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus acidophilus 30SC] gi|312276017|gb|ADQ58657.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus amylovorus GRL 1112] gi|325332922|gb|ADZ06830.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus acidophilus 30SC] gi|327183176|gb|AEA31623.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus amylovorus GRL 1118] Length = 186 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ + ++ + + Sbjct: 1 MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVEVHM 60 Query: 192 ISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248 +L L+ + SS + ++ KN + G E GL +E Sbjct: 61 HDDLNAFLKTLGPDDEMYLISKFSSKNYSQVDYTDKNKNYYFVFGKETTGLPETFMREYY 120 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I+ N+SN+ A+ L Sbjct: 121 DRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 151 >gi|301165389|emb|CBW24960.1| putative SpoU-like rRNA methylase [Bacteriovorax marinus SJ] Length = 256 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 104/258 (40%), Gaps = 7/258 (2%) Query: 23 LRRNHRDYKKMQS-FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81 ++ ++ K + + K + + + + V LN+ ++ +L + + R Sbjct: 4 IKVDNISDKNISEFLSLKDKSLALSNTIIVETEKVVLKLLNSN-TEVIKLFVNPDFIDRH 62 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 + + T + + +I+G +H G+ +LD +++ L++ + + Sbjct: 63 SELLSKLS-IDIYTADKEVMQEIIGH-NLHHGVMALARRPEYISLDELQDKVLIL--NGL 118 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 P NIG I+R+ AF+ + II KR + + G + + + ++L L+K Sbjct: 119 TSPENIGTIVRNCAAFNINSIIIDKRTCSPYVRRCIRVSMGNIFRVKVYKSNDLKSDLKK 178 Query: 202 -MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + L + K +I+G+EG G+ E + + + + + Sbjct: 179 LQSLGHRVISTANQEGAIDLPKYSFPKKSCVIIGSEGHGIEKDILEVSDDIIRIPIDDTV 238 Query: 261 KALNVSNAAAVALYITQN 278 LN + ++++ LY Sbjct: 239 AHLNAACSSSIFLYQLSQ 256 >gi|94969144|ref|YP_591192.1| RNA methyltransferase TrmH, group 1 [Candidatus Koribacter versatilis Ellin345] gi|94551194|gb|ABF41118.1| RNA methyltransferase TrmH, group 1 [Candidatus Koribacter versatilis Ellin345] Length = 239 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 25/53 (47%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+A++ G+E +GL + + H+ ++N+ A AV +Y Sbjct: 108 SGKVAVLFGSEKRGLSNEDLSHCHWLMHIPTRTEHLSMNLGQAVAVCMYEIAR 160 >gi|170767374|ref|ZP_02901827.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii TW07627] gi|170123708|gb|EDS92639.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii TW07627] Length = 246 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVITYEVR 157 >gi|95929632|ref|ZP_01312374.1| RNA methyltransferase TrmH, group 1 [Desulfuromonas acetoxidans DSM 684] gi|95134329|gb|EAT15986.1| RNA methyltransferase TrmH, group 1 [Desulfuromonas acetoxidans DSM 684] Length = 261 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 9/91 (9%), Positives = 27/91 (29%) Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + + + + + AL+ G E GL + + Sbjct: 81 HGCQYAFGTTRRFGRYRDRDDFLYPDAAAQMIAGFDHDTHTALVFGREDCGLLNEELDLC 140 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + ++N++ + ++ LY Sbjct: 141 QRFLTIPTCDAMPSMNLAQSVSLCLYEVSKQ 171 >gi|293379119|ref|ZP_06625270.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium PC4.1] gi|292642260|gb|EFF60419.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium PC4.1] Length = 167 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I R+ A + + ++ L ++ + Sbjct: 1 MNHIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251 S+L L + I + E ++ + G E GL +E Sbjct: 61 SDLEAFLTFLGDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPEAFMRENEEKC 120 Query: 252 AHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 121 LRIPMNDEHVRSLNLSNTAAMIVYEALRQ 149 >gi|71893495|ref|YP_278941.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J] Length = 146 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 11/95 (11%), Positives = 25/95 (26%), Gaps = 1/95 (1%) Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + QK + + + I + G E G+ + + Sbjct: 33 HKNWQNFSEKYGQKNLFFITRYGQKLYTEVDFYTEIETKKDIFFVFGRESTGIPIEILKK 92 Query: 248 ATS-MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M ++LN++N + Y Sbjct: 93 NKEKCLRIPMIAKARSLNLANTVVIIAYEFHRQLN 127 >gi|15602181|ref|NP_245253.1| hypothetical protein PM0316 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720552|gb|AAK02400.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 238 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K +A++ G E GL + + +LN++ A + Y + Sbjct: 105 KQAPVAIVFGRERIGLTNEELLKCRYHLTIPANPDYSSLNLAMAVQLICYELR 157 >gi|90410858|ref|ZP_01218872.1| putative RNA methyltransferase, TrmH family protein [Photobacterium profundum 3TCK] gi|90328071|gb|EAS44382.1| putative RNA methyltransferase, TrmH family protein [Photobacterium profundum 3TCK] Length = 218 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + ++ +LN++ A Y + Sbjct: 82 HPVAILFGRERTGLTNEELQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVR 132 >gi|88802324|ref|ZP_01117851.1| putative tRNA methyltransferase [Polaribacter irgensii 23-P] gi|88781182|gb|EAR12360.1| putative tRNA methyltransferase [Polaribacter irgensii 23-P] Length = 168 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 5/159 (3%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE- 185 + + +V D + P NIG R + +F I + +E+ ++ K+A + Sbjct: 11 NEQTQFPITIVCDAIRTPENIGMCFRISESFGVSKIYFHEASPSTENKIVKKTARNTIHQ 70 Query: 186 --HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 H Y L L+ + KN+KI L+LG+E G+ + Sbjct: 71 TEHETYSNFKELITTLRAQGNKIIGIEITDKSINIQDFDFQKNEKIVLLLGSERNGV--E 128 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +A + M G ++NV ++ A+ LY + K Sbjct: 129 NINSADETIAIPMYGKNSSMNVIHSLAITLYEATSQLLK 167 >gi|304314187|ref|YP_003849334.1| rRNA methylase [Methanothermobacter marburgensis str. Marburg] gi|302587646|gb|ADL58021.1| predicted rRNA methylase [Methanothermobacter marburgensis str. Marburg] Length = 240 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 21/53 (39%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + ++ G EG GL + + + +N+++AAA+ Y Sbjct: 115 RTFILFGREGDGLSNRELGLCDMVVSIPTDREYPIMNITHAAAIIFYEIFKKR 167 >gi|309810611|ref|ZP_07704422.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] gi|308435412|gb|EFP59233.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] Length = 263 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 57/189 (30%), Gaps = 8/189 (4%) Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 P+ ++ G + + +++ NIG+++R+A A Sbjct: 47 DPELLEH--GDRRNVEDRFRYWRHDAIVEELDTARHAFHVAVENWEHDFNIGSVIRTANA 104 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216 F+ R + + H P + A L + Sbjct: 105 FNAKAFHIVGRRRWNRRGAMVTDRYQHEFHHPTVDDLLAWAATAGPVDAAGHPTRLPVIA 164 Query: 217 KKPL------EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + E + L+ G EG G+ E A ++ + G +++N AAA Sbjct: 165 IDNVAGSVPLEAFDLPEHCVLLFGQEGPGVSADALERADAVLDIAQFGSTRSINAGAAAA 224 Query: 271 VALYITQNH 279 V ++ Sbjct: 225 VTMHAWIRR 233 >gi|269975955|ref|ZP_06182959.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1] gi|306817283|ref|ZP_07451029.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239] gi|269935783|gb|EEZ92313.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1] gi|304649963|gb|EFM47242.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239] Length = 222 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +I G E G+ P TQE + + G ++LNV +AAA++++ Sbjct: 160 CELPRRCLMIFGEESSGITPATQEILDRLIQIAQYGSTRSLNVGHAAAISMWAWVR 215 >gi|46137319|ref|XP_390351.1| hypothetical protein FG10175.1 [Gibberella zeae PH-1] Length = 695 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 3/56 (5%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLH---MPGIIKALNVSNAAAVALYITQN 278 + L+LG EG GL + + + + +LNVS AA + + Sbjct: 551 DHPCLLVLGNEGHGLSKPVKVASDYELSVPRFVQGSCVDSLNVSVAAGLLCHAFVK 606 Score = 41.0 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 47/138 (34%), Gaps = 28/138 (20%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKS-------------------RHTSQPENLFLYGVHTV 57 +S+ + RR++ + S ++ S ++T+ YG V Sbjct: 261 NSNRSAPRRDNTRNDRWNSPDEDSSDVYAVERAQRNGMMAMTIKYTTAASQFL-YGRSVV 319 Query: 58 SAALNNPSRKIFQLLATKNALARLDWDA------NLPHPFPVKTVP--PQTIDKIVGKEA 109 AAL RK++ L + D H P+ TVP Q I + Sbjct: 320 KAALEQNRRKLYNLYIYGGENRMDNKDNTIMTRMAEKHGVPITTVPTHEQRIMDKMSMGR 379 Query: 110 VHQGLALETAPLLSPTLD 127 H G LE +PL + Sbjct: 380 PHNGFVLEASPLPQLPIK 397 >gi|119898311|ref|YP_933524.1| RNA methyltransferase [Azoarcus sp. BH72] gi|119670724|emb|CAL94637.1| RNA methyltransferase, TrmH family, group 1 [Azoarcus sp. BH72] Length = 242 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 18/52 (34%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN+ A + Y + Sbjct: 111 QGDVALVFGNETSGLSNEDVLLCGMPVSIPANPAFSSLNLGAAVQLLCYEMR 162 >gi|114330429|ref|YP_746651.1| RNA methyltransferase [Nitrosomonas eutropha C91] gi|114307443|gb|ABI58686.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas eutropha C91] Length = 248 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 19/52 (36%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +AL+ G E GL + +LN++ A V Y + Sbjct: 111 HHPVALLFGRESAGLTAAEISHCQVTVQIPANPDCSSLNLAAAVQVMAYELR 162 >gi|312884217|ref|ZP_07743926.1| RNA methyltransferase, TrmH family protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367990|gb|EFP95533.1| RNA methyltransferase, TrmH family protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 241 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 26/70 (37%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + +E ++ +AL+ G E GL + + + +LN++ Sbjct: 88 WPMLEPRECGRKFVEEGESSPVALVFGRERTGLTNEELQKCHFHVCIPANPEYSSLNLAM 147 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 148 AVQTLSYEVR 157 >gi|120401678|ref|YP_951507.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1] gi|119954496|gb|ABM11501.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii PYR-1] Length = 214 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 21/55 (38%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 LI G EG G+ + A + G +++N AA +A++ Sbjct: 152 LPRDCLLIFGQEGPGITDDAKAGAPLTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 206 >gi|296875981|ref|ZP_06900040.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912] gi|296433056|gb|EFH18844.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912] Length = 180 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 2/146 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + +L Sbjct: 17 IVLFQPQIPQNTGNIARTCAATNSPLHIIRPMAFPIDDRKMKRAGLDYWDKLDVRFYDSL 76 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHL 254 + ++ + ++ + G E KGL + Sbjct: 77 EEFMEAARDGQVHLVSKFANQTYSDVSYQDGKSHYFLFGREDKGLPEDFMRQYEEKAIRI 136 Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279 M +++LNVSN + +Y Sbjct: 137 PMNDEHVRSLNVSNTVCMIVYEALRQ 162 >gi|45357897|ref|NP_987454.1| TrmH family RNA methyltransferase [Methanococcus maripaludis S2] gi|45047457|emb|CAF29890.1| rRNA methyltransferase related protein [Methanococcus maripaludis S2] Length = 234 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ G E GL+ + E + + LN+S+A +V LY Sbjct: 110 IVFGREDDGLKNEDVELCDILVSVPTSNKYPILNLSHAVSVILYEIY 156 >gi|257880323|ref|ZP_05659976.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933] gi|257882177|ref|ZP_05661830.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502] gi|257885370|ref|ZP_05665023.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501] gi|257890982|ref|ZP_05670635.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410] gi|257894237|ref|ZP_05673890.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408] gi|260562373|ref|ZP_05832887.1| RNA methyltransferase TrmH [Enterococcus faecium C68] gi|257814551|gb|EEV43309.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933] gi|257817835|gb|EEV45163.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502] gi|257821226|gb|EEV48356.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501] gi|257827342|gb|EEV53968.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410] gi|257830616|gb|EEV57223.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408] gi|260073297|gb|EEW61638.1| RNA methyltransferase TrmH [Enterococcus faecium C68] Length = 168 Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + + ++ L ++ + Sbjct: 1 MMNHIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 SNL L + + I + E ++ + G E GL +E Sbjct: 61 HSNLEAFLTFLGNRKLHLISKFAHKVYSDENFADGEEHFFLFGKETTGLPETFMRENEEK 120 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 121 CLRIPMNDEHVRSLNLSNTAAMIVYEALRQ 150 >gi|50557128|ref|XP_505972.1| YALI0F27995p [Yarrowia lipolytica] gi|49651842|emb|CAG78784.1| YALI0F27995p [Yarrowia lipolytica] Length = 608 Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 21/168 (12%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 R L++ LD +ND HN+G+ILRS D +I T + S +AK++SGALE+ Sbjct: 435 HRPRRFPLVVYLDQLNDTHNLGSILRSCQFLGADAVIVTAKNCAPLSPAVAKTSSGALEY 494 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSK---------------KPLEQEIKNDKIAL 231 +P S + I ++ + + N L Sbjct: 495 MPVFENSKTPAHFFQKCKNNGWNIVCAAVPTASGAAKSKADKPLSLRQCGSWLDNKPTVL 554 Query: 232 ILGAEGKGLRPKTQETATSMAHLHM------PGIIKALNVSNAAAVAL 273 +LG E G+R A + + +LNV AA + + Sbjct: 555 VLGGEHGGVRQTILNQADHHVIVPASNSWIKNNTVDSLNVGVAAGILI 602 Score = 44.1 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 12/104 (11%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP------ENLFLYGVHTVSAALNNPSRK-- 67 K +++++ K+ F + + LYG H V A L + R+ Sbjct: 139 KPKKVYIVKKDNPREKEGAIFRNRQTYDKPKLDERFFGQDVLYGTHAVEACLTSHKRRNQ 198 Query: 68 IFQLLATKNAL----ARLDWDANLPHPFPVKTVPPQTIDKIVGK 107 +L + L + D P + V T++ I Sbjct: 199 CLKLFVGEGKLGEPVVKKIMDMARKLRIPTENVDRNTLNLITKH 242 >gi|126465680|ref|YP_001040789.1| RNA methyltransferase [Staphylothermus marinus F1] gi|126014503|gb|ABN69881.1| RNA methyltransferase, TrmH family, group 1 [Staphylothermus marinus F1] Length = 231 Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 24/52 (46%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +++A++ G E GL K A + + LN+S A AV L+ N Sbjct: 105 NRLAILFGRESTGLTRKELRYADVLVTIPANPEYPVLNLSQAVAVFLWEIWN 156 >gi|297526044|ref|YP_003668068.1| tRNA/rRNA methyltransferase (SpoU) [Staphylothermus hellenicus DSM 12710] gi|297254960|gb|ADI31169.1| tRNA/rRNA methyltransferase (SpoU) [Staphylothermus hellenicus DSM 12710] Length = 231 Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 24/52 (46%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +++A++ G E GL K A + + LN+S A AV L+ N Sbjct: 105 NRLAILFGRESTGLTRKELRYADVLVTIPANPEYPVLNLSQAVAVFLWEIWN 156 >gi|225352565|ref|ZP_03743588.1| hypothetical protein BIFPSEUDO_04189 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156759|gb|EEG70153.1| hypothetical protein BIFPSEUDO_04189 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 265 Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+E + ++ GAEG GL K E A + ++ G ++++N AAAV+++ Sbjct: 199 PMETYHFPKRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMHAWIA 258 Query: 279 H 279 Sbjct: 259 Q 259 >gi|313201578|ref|YP_004040236.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688] gi|312440894|gb|ADQ85000.1| RNA methyltransferase, TrmH family, group 1 [Methylovorus sp. MP688] Length = 254 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ KIAL+ G E GL + +A + +LN++ A V Y + Sbjct: 114 AHEDSKIALVFGTEMSGLSNAELDRCQLLAMIPTDPGYWSLNLAAAVQVMCYEVR 168 >gi|116327528|ref|YP_797248.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331859|ref|YP_801577.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120272|gb|ABJ78315.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125548|gb|ABJ76819.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 153 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATS--MAHLHMPGIIKALNVSNAAAVALYITQ 277 + A + G E G+ K + + + + + M + LN+SN+ AV Y Sbjct: 88 YTDVQYKEGDAFLFGNETSGVPTKMKNSWSEERILKIPMEDSSRCLNLSNSVAVISYEAM 147 Query: 278 NHF 280 Sbjct: 148 RQI 150 >gi|186476154|ref|YP_001857624.1| RNA methyltransferase [Burkholderia phymatum STM815] gi|184192613|gb|ACC70578.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia phymatum STM815] Length = 276 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + IAL+ G E GL E +++AH+ +LN+S A V Y + Sbjct: 134 HGDIALVFGNERTGLSNDDVERCSALAHIPANPAYSSLNLSQAIQVLSYELR 185 >gi|283832087|ref|ZP_06351828.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Citrobacter youngae ATCC 29220] gi|291071712|gb|EFE09821.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Citrobacter youngae ATCC 29220] Length = 243 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A V Y + Sbjct: 106 NSPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVISYEVR 157 >gi|315499510|ref|YP_004088313.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB 48] gi|315417522|gb|ADU14162.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB 48] Length = 264 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 47/165 (28%), Gaps = 11/165 (6%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P L+ + ++LD NIG++ R F + +SGA Sbjct: 8 PPLERPDLTLPCVILDRPQMAENIGSVARVMANFGLRDLRIVDPRDGWPQERAWAMSSGA 67 Query: 184 LEHIPYIRISNL-----------TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + I + + + K L+ Sbjct: 68 HWPLDNATIYETVAEAIADLNAVYATTARPRETQLPVRTPRQCADDSYANAQQGLKTGLL 127 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 GAE GL S+ + + +LN+S A + LY + Sbjct: 128 FGAERAGLETSDIALCHSIVTIPVDPAFHSLNLSQAVNIVLYEWR 172 >gi|237732512|ref|ZP_04562993.1| tRNA Cm32/Um32 methyltransferase [Citrobacter sp. 30_2] gi|226908051|gb|EEH93969.1| tRNA Cm32/Um32 methyltransferase [Citrobacter sp. 30_2] Length = 243 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A V Y + Sbjct: 106 NSPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVISYEVR 157 >gi|81428093|ref|YP_395092.1| putative rRNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] gi|78609734|emb|CAI54780.1| Putative rRNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] Length = 169 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 231 LILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G E GL +E + M I+ALN+SN AA+ ++ Sbjct: 102 FMFGKETTGLPETFMRENEDQCLRIPMSDHIRALNLSNCAALVIFEALRQ 151 >gi|323159303|gb|EFZ45289.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ domain protein [Escherichia coli E128010] Length = 148 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A V Y + Sbjct: 8 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 59 >gi|283786147|ref|YP_003366012.1| RNA methyltransferase [Citrobacter rodentium ICC168] gi|282949601|emb|CBG89220.1| putative RNA methyltransferase [Citrobacter rodentium ICC168] Length = 244 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|253997035|ref|YP_003049099.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8] gi|253983714|gb|ACT48572.1| RNA methyltransferase, TrmH family, group 1 [Methylotenera mobilis JLW8] Length = 247 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N IAL+ G E GL + +A + +LN++ A V Y + Sbjct: 111 NQPIALVFGTEMSGLSNAELDCCQLLAMIPANPEYSSLNLAAAVQVMTYEIR 162 >gi|213613094|ref|ZP_03370920.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 160 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|213421799|ref|ZP_03354865.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 200 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|213021906|ref|ZP_03336353.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 217 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|194442269|ref|YP_002041807.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194400932|gb|ACF61154.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 243 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|168238284|ref|ZP_02663342.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736797|ref|YP_002115608.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712299|gb|ACF91520.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288817|gb|EDY28190.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 243 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|198242671|ref|YP_002216611.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937187|gb|ACH74520.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624366|gb|EGE30711.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 243 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|161502300|ref|YP_001569412.1| hypothetical protein SARI_00331 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863647|gb|ABX20270.1| hypothetical protein SARI_00331 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 242 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|157144530|ref|YP_001451849.1| hypothetical protein CKO_00249 [Citrobacter koseri ATCC BAA-895] gi|166234834|sp|A8AD50|TRMJ_CITK8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|157081735|gb|ABV11413.1| hypothetical protein CKO_00249 [Citrobacter koseri ATCC BAA-895] Length = 243 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|62181109|ref|YP_217526.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224582915|ref|YP_002636713.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|75481665|sp|Q57LG7|TRMJ_SALCH RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|62128742|gb|AAX66445.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224467442|gb|ACN45272.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715599|gb|EFZ07170.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 243 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|16761459|ref|NP_457076.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765865|ref|NP_461480.1| rRNA methylase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29140844|ref|NP_804186.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412577|ref|YP_149652.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161612690|ref|YP_001586655.1| hypothetical protein SPAB_00387 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549427|ref|ZP_02343186.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992671|ref|ZP_02573767.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232119|ref|ZP_02657177.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168243330|ref|ZP_02668262.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261412|ref|ZP_02683385.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466698|ref|ZP_02700552.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821474|ref|ZP_02833474.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194448527|ref|YP_002046606.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470101|ref|ZP_03076085.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197249941|ref|YP_002147500.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263679|ref|ZP_03163753.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361512|ref|YP_002141148.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200387870|ref|ZP_03214482.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929589|ref|ZP_03220663.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353644|ref|YP_002227445.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857953|ref|YP_002244604.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213425309|ref|ZP_03358059.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646423|ref|ZP_03376476.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855575|ref|ZP_03383815.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238912666|ref|ZP_04656503.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825401|ref|ZP_06544638.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|54040206|sp|P66975|TRMJ_SALTI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|54042610|sp|P66974|TRMJ_SALTY RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|81362035|sp|Q5PNG3|TRMJ_SALPA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|25304297|pir||AH0824 probable RNA methyltransferase STY2791 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421090|gb|AAL21439.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503759|emb|CAD02748.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29136469|gb|AAO68035.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126834|gb|AAV76340.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161362054|gb|ABX65822.1| hypothetical protein SPAB_00387 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194406831|gb|ACF67050.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456465|gb|EDX45304.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195630820|gb|EDX49412.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197092988|emb|CAR58420.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213644|gb|ACH51041.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241934|gb|EDY24554.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199604968|gb|EDZ03513.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321308|gb|EDZ06508.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273425|emb|CAR38400.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325485|gb|EDZ13324.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329145|gb|EDZ15909.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333625|gb|EDZ20389.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337632|gb|EDZ24396.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341947|gb|EDZ28711.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349568|gb|EDZ36199.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709756|emb|CAR34108.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247741|emb|CBG25569.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994667|gb|ACY89552.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159094|emb|CBW18608.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913534|dbj|BAJ37508.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087043|emb|CBY96812.1| putative ATP synthase beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222750|gb|EFX47821.1| tRNA:Cm32/Um32 methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613315|gb|EFY10257.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620481|gb|EFY17346.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625051|gb|EFY21880.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629505|gb|EFY26281.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633892|gb|EFY30631.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635498|gb|EFY32209.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639826|gb|EFY36505.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644288|gb|EFY40832.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652255|gb|EFY48612.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654837|gb|EFY51154.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658235|gb|EFY54501.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661694|gb|EFY57912.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669674|gb|EFY65820.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673319|gb|EFY69424.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674892|gb|EFY70979.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682915|gb|EFY78933.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685576|gb|EFY81571.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323130875|gb|ADX18305.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194687|gb|EFZ79877.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200371|gb|EFZ85452.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201271|gb|EFZ86338.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208341|gb|EFZ93281.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211583|gb|EFZ96421.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216015|gb|EGA00747.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221912|gb|EGA06306.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225597|gb|EGA09824.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229314|gb|EGA13438.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235371|gb|EGA19455.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237443|gb|EGA21506.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245198|gb|EGA29199.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248772|gb|EGA32699.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254048|gb|EGA37869.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254913|gb|EGA38705.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262018|gb|EGA45583.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267802|gb|EGA51283.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269639|gb|EGA53091.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326628746|gb|EGE35089.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989472|gb|AEF08455.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 243 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|237705043|ref|ZP_04535524.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia sp. 3_2_53FAA] gi|226901409|gb|EEH87668.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia sp. 3_2_53FAA] Length = 246 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + + +LN++ A V Y + Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHCHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|294339583|emb|CAZ87942.1| putative RNA methyltransferase TrmH, group 1 [Thiomonas sp. 3As] Length = 260 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 21/52 (40%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++A + G+E GL ++ + +LN++ A V + + Sbjct: 127 RRVAFVFGSERFGLSNADVYRCDALLSIPANPAYTSLNLAQAVQVIAWEWRK 178 >gi|296135475|ref|YP_003642717.1| RNA methyltransferase, TrmH family, group 1 [Thiomonas intermedia K12] gi|295795597|gb|ADG30387.1| RNA methyltransferase, TrmH family, group 1 [Thiomonas intermedia K12] Length = 260 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 21/52 (40%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++A + G+E GL ++ + +LN++ A V + + Sbjct: 127 RRVAFVFGSERFGLSNADVYRCDALLSIPANPAYTSLNLAQAVQVIAWEWRK 178 >gi|297587755|ref|ZP_06946399.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516] gi|297574444|gb|EFH93164.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516] Length = 234 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 81/219 (36%), Gaps = 10/219 (4%) Query: 59 AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118 + N + + ++L +++ L T+ + I+KI K+ + + Sbjct: 24 ELIENKADIVEEVLISEDFNDTEKLINILNDKKIPYTISSKQINKISLKDKEYVIGVFKK 83 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 + ++LD +++ N+G I+RS + F + + + + Sbjct: 84 QKSKLQEKNH-------IILDGIDNMGNLGTIMRSMLGFGYKDLALISNTCDVYNPKVVR 136 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 ++ GA + R NL +K L +S L +L G EG Sbjct: 137 ASMGAFFKLNIQRFDNL-QDYKKNFPENKIYSFLLDESSDELGDVKFEQPFSLAFGNEGA 195 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 GL + + ++ + +LN+ A ++A+Y ++ Sbjct: 196 GLPQEYYNE--NKIFINQSKDVDSLNLPIACSIAMYQSR 232 >gi|150400509|ref|YP_001324275.1| RNA methyltransferase [Methanococcus aeolicus Nankai-3] gi|150013212|gb|ABR55663.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus aeolicus Nankai-3] Length = 231 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ L+ G E GL E + +N+S+A ++ LY N Sbjct: 105 DGRLGLVFGREDYGLYNDELELCDLFVSIPTSEDYPIMNLSHAVSIILYEIYN 157 >gi|118616019|ref|YP_904351.1| RNA methyltransferase [Mycobacterium ulcerans Agy99] gi|118568129|gb|ABL02880.1| RNA methyltransferase [Mycobacterium ulcerans Agy99] Length = 218 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G EG G+ T+ A + G +++N AA +A++ Sbjct: 156 LPRDCLLVFGREGPGITDDTRVGAVVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 210 >gi|291287787|ref|YP_003504603.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM 12809] gi|290884947|gb|ADD68647.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM 12809] Length = 169 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 2/150 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I R V I+ K + + ++ +++ +++ Sbjct: 1 MLNIVLYEPEIPQNTGNIGRFCVGTESRLILVGKLGFSLDDKHVKRAGLDYWQNVNLMQL 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKT-QETATS 250 +L ++ + LS + + + +ND + LI G E GL ++ S Sbjct: 61 PSLEAFYEEFPNDKHPYAFLSKFASRVYTEIPHENDNLMLIFGRETSGLPESVEKDHPDS 120 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + G +++ N+SN+ A+ + Sbjct: 121 LFRIPATGKVRSFNLSNSVALVGFDIIRRR 150 >gi|91775165|ref|YP_544921.1| RNA methyltransferase TrmH, group 1 [Methylobacillus flagellatus KT] gi|91709152|gb|ABE49080.1| RNA methyltransferase TrmH, group 1 [Methylobacillus flagellatus KT] Length = 251 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 21/50 (42%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + +A + +LN++ A V Y + Sbjct: 114 PVAIVFGTEMSGLSNAELDHCQLLAMIPANPEYSSLNLAAAVQVISYELR 163 >gi|227505888|ref|ZP_03935937.1| RNA methyltransferase [Corynebacterium striatum ATCC 6940] gi|227197516|gb|EEI77564.1| RNA methyltransferase [Corynebacterium striatum ATCC 6940] Length = 229 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 4/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + +++ + NIG ++R+A AF+ D + R + + L H Sbjct: 76 RRHALHIAIENFENDSNIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLMHHAT 135 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + + + ++ L+ G EG G+ + Q+ A Sbjct: 136 VAELLEWASDKGLTVVAIDNTPGCVPLET----AELPERCLLLFGQEGPGVTQEAQDAAM 191 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G +++N AA +A++ Sbjct: 192 MTCSIAQFGSTRSINAGVAAGIAMHAWIRQ 221 >gi|226365015|ref|YP_002782798.1| RNA methyltransferase [Rhodococcus opacus B4] gi|226243505|dbj|BAH53853.1| putative RNA methyltransferase [Rhodococcus opacus B4] Length = 230 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 5/193 (2%) Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHN 146 H PV P + + G + + A + D R L + +++ N Sbjct: 34 EHDTPVPADPRYDPELLAGGDRRNVVDAYRYWTREAIVADIDSRRHPLHVAIENFGHDAN 93 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IG ++R+A AF+ + R + + + H P + + + Sbjct: 94 IGTVVRTANAFAAAAVHIVGRRRWNRRGAMVTDRYQHVLHHPDVDGLVDFARERDLTIVA 153 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 S + L+ G EG G+ + + A + G +++N Sbjct: 154 VDNTPGSVPLET----ANLPRDCVLLFGQEGPGVTDQAKGVAAMTVSIAQFGSTRSINAG 209 Query: 267 NAAAVALYITQNH 279 AA +A++ Sbjct: 210 VAAGIAMHAWVRQ 222 >gi|13508260|ref|NP_110209.1| putative rRNA methylase [Mycoplasma pneumoniae M129] gi|2500863|sp|P75257|TRML_MYCPN RecName: Full=Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase MPN_521 gi|1673994|gb|AAB95969.1| putative rRNA methylase [Mycoplasma pneumoniae M129] gi|301633607|gb|ADK87161.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma pneumoniae FH] Length = 166 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 4/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P+N G I+RS AF + + + ++ + + + Sbjct: 8 IVLFCPEIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKVQMFEHKSW 67 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQE-TATSM 251 ++ + S + P + ++ D + + G E KGL E + + Sbjct: 68 EHFIETTPPNKAIWLLTKSGTTTPDQINMQTDNREQLYFVFGQETKGLPQTLMEQYSQNQ 127 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + + ++++N+SN A LY Sbjct: 128 VRIPIWNPVRSINLSNTVACVLYEYAKQ 155 >gi|306827948|ref|ZP_07461215.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782] gi|304429867|gb|EFM32909.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782] Length = 194 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 3/155 (1%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D V+ ++ +VL P N G I R+ A + I P + + ++ + Sbjct: 23 DKVKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDK 82 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQ 245 + +L + + H + ++ D + G E GL + Sbjct: 83 LELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYAD-GDSHYFLFGREDTGLPEDFMR 141 Query: 246 ETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 E A + M +++LNVSN + +Y Sbjct: 142 EHAEKALRIPMNDEHVRSLNVSNTVCMVVYEALRQ 176 >gi|253999551|ref|YP_003051614.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4] gi|253986230|gb|ACT51087.1| RNA methyltransferase, TrmH family, group 1 [Methylovorus sp. SIP3-4] Length = 258 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 22/50 (44%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 KIAL+ G E GL + +A + +LN++ A V Y + Sbjct: 123 KIALVFGTEMSGLSNAELDRCQLLAMIPTDPGYWSLNLAAAVQVMCYEVR 172 >gi|261415409|ref|YP_003249092.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371865|gb|ACX74610.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp. succinogenes S85] Length = 218 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 2/146 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R MVL+ + DPHNI A++R+A F + + + G+ + + Sbjct: 27 NRRTRHFCMVLEDLFDPHNISAVIRTAEVFGLQDVHIIEEDNAYSVNKSI--LKGSYKWM 84 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 ++K+ G++ S+++ + + +A LG+E G P T Sbjct: 85 SLYLYKKRMLCMEKLREKGYKIAVASTNTTNSVLDLDLSQPMAFYLGSEFHGNHPDTLAH 144 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 A L GI +++NVS A V + Sbjct: 145 ADYEFKLPQYGITESMNVSVAGGVLM 170 >gi|295426405|ref|ZP_06819055.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664] gi|295063773|gb|EFG54731.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664] Length = 186 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ + ++ + + Sbjct: 1 MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVEIHM 60 Query: 192 ISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248 +L L+ + + SS + ++ N + G E GL +E Sbjct: 61 HDDLEAFLKTLGPNDEMYLISKFSSKNYAQVDYTDPNKNYYFVFGKETTGLPETFMREYY 120 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I+ N++N+ A+ L Sbjct: 121 DRNLRIPMSNNIRCYNLANSVAMVLLEALRQ 151 >gi|311743114|ref|ZP_07716922.1| SpoU rRNA methylase [Aeromicrobium marinum DSM 15272] gi|311313794|gb|EFQ83703.1| SpoU rRNA methylase [Aeromicrobium marinum DSM 15272] Length = 156 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 2/81 (2%) Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPG 258 H + ++ +++ L+ G E GL + + T L M Sbjct: 66 WDHLLPARVFAFTAQAERVYTDVRYRPGDVLLFGPEPTGLPGEVMDDPRVTDRLRLPMLP 125 Query: 259 IIKALNVSNAAAVALYITQNH 279 +++N++N A+VA+Y Sbjct: 126 GRRSMNLANCASVAVYEAWRQ 146 >gi|226304893|ref|YP_002764851.1| methyltransferase [Rhodococcus erythropolis PR4] gi|226184008|dbj|BAH32112.1| putative methyltransferase [Rhodococcus erythropolis PR4] Length = 230 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L+ G EG G+ +E A+ + G +++N AA +A++ Sbjct: 168 LPRECILLFGQEGPGVTEHAKEVASMTVSIAQFGSTRSINAGVAAGIAMHAWVR 221 >gi|91214829|ref|ZP_01251802.1| rRNA methylase [Psychroflexus torquis ATCC 700755] gi|91187256|gb|EAS73626.1| rRNA methylase [Psychroflexus torquis ATCC 700755] Length = 171 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 KI L+LG E G+ +T H+ M G +LNV+ +ALY + Sbjct: 115 LKSKILLVLGNEKLGINSETLNRLDRSYHIKMFGTNSSLNVAQTLGIALYEIRR 168 >gi|33240594|ref|NP_875536.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238122|gb|AAQ00189.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 246 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 34/78 (43%) Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 G + S ++ + L + D IA+I G E +GL + A + L Sbjct: 86 CGRIDHGDIPLHTSKNALQWLLETNPKDPIAIIFGREDRGLSNSELQIAQKIITLKTSEK 145 Query: 260 IKALNVSNAAAVALYITQ 277 +LN+S+A A+ L+ + Sbjct: 146 YPSLNLSHAVAIVLHEFK 163 >gi|329849321|ref|ZP_08264167.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] gi|328841232|gb|EGF90802.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] Length = 267 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + K L+ GAE GL ++ + + +LN++ A + LY + Sbjct: 120 HQKTGLLFGAERAGLETSDIALCHAIVTIPVDPHFHSLNLAQAVNIILYEWR 171 >gi|330817527|ref|YP_004361232.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia gladioli BSR3] gi|327369920|gb|AEA61276.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia gladioli BSR3] Length = 258 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA + G E GL + E +++AH+ +LN+S A V Y + Sbjct: 124 IAFVFGNERVGLSNEHVERCSAIAHIPANPDYSSLNLSQAIQVLAYELR 172 >gi|326803147|ref|YP_004320965.1| RNA methyltransferase, TrmH family, group 2 [Aerococcus urinae ACS-120-V-Col10a] gi|326651146|gb|AEA01329.1| RNA methyltransferase, TrmH family, group 2 [Aerococcus urinae ACS-120-V-Col10a] Length = 178 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 49/154 (31%), Gaps = 6/154 (3%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + ++ L ++ + + Sbjct: 1 MTNHIVLFEPEIPANTGNIARTCAATDTHLHLIEPLGFQTDDKHLKRAGLDYWDALDITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK----IALILGAEGKGLRPK-TQE 246 +L + + I + + + K I L+ G E GL E Sbjct: 61 HDDLKAFINYLDGRPLYLISKFATKNYTDIDYMAHKKRGEDIFLMFGKETTGLPEAFMHE 120 Query: 247 TATSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279 L M ++ LN+SN AA+ +Y Sbjct: 121 HEDQCLRLPMDDTHVRCLNLSNCAAICIYEVLRQ 154 >gi|238027926|ref|YP_002912157.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1] gi|237877120|gb|ACR29453.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia glumae BGR1] Length = 284 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA + G E GL + E +++AH+ +LN+S A V Y + Sbjct: 149 IAFVFGNERVGLSNEHVERCSAIAHIPANPEYSSLNLSQAIQVLAYELR 197 >gi|172037914|ref|YP_001804415.1| RNA methyltransferase [Cyanothece sp. ATCC 51142] gi|171699368|gb|ACB52349.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. ATCC 51142] Length = 247 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 21/53 (39%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 N AL+ G E +GL + A + +LN++ A AV Y Sbjct: 109 NFNTALLFGPEDRGLNNEELNYAQRFVCIPANSDYSSLNLAQAVAVCSYELHQ 161 >gi|69249442|ref|ZP_00604978.1| RNA methyltransferase TrmH, group 2 [Enterococcus faecium DO] gi|293559441|ref|ZP_06675979.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E1162] gi|294616195|ref|ZP_06695992.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E1636] gi|294618817|ref|ZP_06698343.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E1679] gi|68194153|gb|EAN08686.1| RNA methyltransferase TrmH, group 2 [Enterococcus faecium DO] gi|291590950|gb|EFF22662.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E1636] gi|291594940|gb|EFF26291.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E1679] gi|291606596|gb|EFF35992.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E1162] Length = 167 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I R+ A + + ++ L ++ + Sbjct: 1 MNHIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251 SNL L + + I + E ++ + G E GL +E Sbjct: 61 SNLEAFLTFLGNRKLHLISKFAHKVYSDENFADGEEHFFLFGKETTGLPETFMRENEEKC 120 Query: 252 AHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 121 LRIPMNDEHVRSLNLSNTAAMIVYEALRQ 149 >gi|91215168|ref|ZP_01252140.1| tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755] gi|91186773|gb|EAS73144.1| tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755] Length = 178 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 3/156 (1%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + L+++LD++ +NIG++ R++ AF I + + K+A GA Sbjct: 17 EFKDSPKTPLILILDNIRSLNNIGSVFRTSDAFLIQKIYLCGITATPPHKDIQKTALGAT 76 Query: 185 EHIPYIRISNL---TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 + + + + N LQ+ +N AL+LG E KG++ Sbjct: 77 QTVDWAYVENTLEVVKDLQQQGVKVMSIEQAEDSISLKDFNPRQNQLYALVLGHEVKGVQ 136 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + + + + G +LN+S + ++ Sbjct: 137 QEVVDQSDGVLEIPQLGTKHSLNISVTTGICVWDFM 172 >gi|302328206|gb|ADL27407.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 205 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 2/146 (1%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 R MVL+ + DPHNI A++R+A F + + + G+ + + Sbjct: 14 NRRTRHFCMVLEDLFDPHNISAVIRTAEVFGLQDVHIIEEDNAYSVNKSI--LKGSYKWM 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 ++K+ G++ S+++ + + +A LG+E G P T Sbjct: 72 SLYLYKKRMLCMEKLREKGYKIAVASTNTTNSVLDLDLSQPMAFYLGSEFHGNHPDTLAH 131 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273 A L GI +++NVS A V + Sbjct: 132 ADYEFKLPQYGITESMNVSVAGGVLM 157 >gi|218514243|ref|ZP_03511083.1| putative tRNA/rRNA aminotransferase/methyltransferase protein [Rhizobium etli 8C-3] Length = 51 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%) Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 LG E G+ E A + + M +++NV+ +AA+ + Sbjct: 1 LGRESAGVPDHVHERADARILIPMVEGQRSINVAVSAAMIVGEAMRQ 47 >gi|325846711|ref|ZP_08169626.1| RNA methyltransferase, TrmH family, group 2 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481469|gb|EGC84510.1| RNA methyltransferase, TrmH family, group 2 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 152 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGII-KALNVSNAAAVALYITQNH 279 D I G E +G+ + + + M + ++LN++N+ A+ LY Sbjct: 91 YKDGDYFIFGREKEGIEKEILDKYKEKIYTIPMTNKLNRSLNLANSVAIVLYEGLRQ 147 >gi|296104218|ref|YP_003614364.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058677|gb|ADF63415.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 241 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A V Y + Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|294995137|ref|ZP_06800828.1| putative RNA methyltransferase [Mycobacterium tuberculosis 210] Length = 192 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+ G EG G+ + A + G +++N AA +A++ Sbjct: 121 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 175 >gi|289756447|ref|ZP_06515825.1| RNA methyltransferase [Mycobacterium tuberculosis T85] gi|289712011|gb|EFD76023.1| RNA methyltransferase [Mycobacterium tuberculosis T85] gi|326902206|gb|EGE49139.1| RNA methyltransferase [Mycobacterium tuberculosis W-148] Length = 183 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+ G EG G+ + A + G +++N AA +A++ Sbjct: 121 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 175 >gi|289552629|ref|ZP_06441839.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 605] gi|298523855|ref|ZP_07011264.1| spou rRNA methylase family protein [Mycobacterium tuberculosis 94_M4241A] gi|308231537|ref|ZP_07412811.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu001] gi|308369379|ref|ZP_07417558.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu002] gi|308370389|ref|ZP_07421329.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu003] gi|308371657|ref|ZP_07425698.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu004] gi|308372877|ref|ZP_07430230.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu005] gi|308373986|ref|ZP_07667687.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu006] gi|308375143|ref|ZP_07442854.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu007] gi|308376379|ref|ZP_07438642.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu008] gi|308377409|ref|ZP_07479043.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu009] gi|308378621|ref|ZP_07483239.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu010] gi|308379766|ref|ZP_07487475.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu011] gi|308395297|ref|ZP_07491976.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu012] gi|289437261|gb|EFD19754.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 605] gi|298493649|gb|EFI28943.1| spou rRNA methylase family protein [Mycobacterium tuberculosis 94_M4241A] gi|308216979|gb|EFO76378.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu001] gi|308327821|gb|EFP16672.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu002] gi|308332174|gb|EFP21025.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu003] gi|308335963|gb|EFP24814.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu004] gi|308339585|gb|EFP28436.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu005] gi|308343439|gb|EFP32290.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu006] gi|308347331|gb|EFP36182.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu007] gi|308351275|gb|EFP40126.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu008] gi|308355928|gb|EFP44779.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu009] gi|308359885|gb|EFP48736.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu010] gi|308363786|gb|EFP52637.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu011] gi|308367456|gb|EFP56307.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu012] gi|323721233|gb|EGB30293.1| RNA methyltransferase [Mycobacterium tuberculosis CDC1551A] gi|328457090|gb|AEB02513.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 4207] Length = 216 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+ G EG G+ + A + G +++N AA +A++ Sbjct: 154 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 208 >gi|302865196|ref|YP_003833833.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029] gi|302568055|gb|ADL44257.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC 27029] Length = 207 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 4/149 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + +++ NIG ++R+A AF + R + + + H P Sbjct: 55 RRHDFHVAIENWQHDFNIGTVVRNANAFLAAEVHIVGRRRWNRRGAMVTDRYQHVRHHPT 114 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I +++ G + S + + + L+ G EG GL + Sbjct: 115 IEEFVAWARDERLPVVGIDNLPGSRPMET----AVLPRRCVLLFGQEGPGLSAVARSACE 170 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ + G +++N A+ +A++ Sbjct: 171 ALFSIAQYGSTRSINAGVASGIAMHAWIR 199 >gi|260185247|ref|ZP_05762721.1| putative RNA methyltransferase [Mycobacterium tuberculosis CPHL_A] gi|289445918|ref|ZP_06435662.1| RNA methyltransferase [Mycobacterium tuberculosis CPHL_A] gi|289418876|gb|EFD16077.1| RNA methyltransferase [Mycobacterium tuberculosis CPHL_A] Length = 183 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+ G EG G+ + A + G +++N AA +A++ Sbjct: 121 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 175 >gi|262040271|ref|ZP_06013522.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042380|gb|EEW43400.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 244 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A V Y + Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|257899601|ref|ZP_05679254.1| RNA methyltransferase TrmH [Enterococcus faecium Com15] gi|257837513|gb|EEV62587.1| RNA methyltransferase TrmH [Enterococcus faecium Com15] Length = 168 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + + ++ L ++ + Sbjct: 1 MMNHIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 S+L L + I + E ++ + G E GL +E Sbjct: 61 HSDLEALLAFLGDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPEAFMRENEEK 120 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 121 CLRIPMNDEHVRSLNLSNTAAMIVYEALRQ 150 >gi|288549938|ref|ZP_05968701.2| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Enterobacter cancerogenus ATCC 35316] gi|288317270|gb|EFC56208.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Enterobacter cancerogenus ATCC 35316] Length = 263 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A V Y + Sbjct: 130 PVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 179 >gi|219556197|ref|ZP_03535273.1| putative rna methyltransferase [Mycobacterium tuberculosis T17] gi|289568293|ref|ZP_06448520.1| RNA methyltransferase [Mycobacterium tuberculosis T17] gi|289542046|gb|EFD45695.1| RNA methyltransferase [Mycobacterium tuberculosis T17] Length = 172 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+ G EG G+ + A + G +++N AA +A++ Sbjct: 110 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 164 >gi|215444463|ref|ZP_03431215.1| RNA methyltransferase [Mycobacterium tuberculosis T85] Length = 199 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+ G EG G+ + A + G +++N AA +A++ Sbjct: 137 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 191 >gi|215409889|ref|ZP_03418697.1| RNA methyltransferase [Mycobacterium tuberculosis 94_M4241A] gi|254549323|ref|ZP_05139770.1| RNA methyltransferase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 199 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+ G EG G+ + A + G +++N AA +A++ Sbjct: 137 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 191 >gi|197335335|ref|YP_002155372.1| RNA methyltransferase TrmH, group 1 [Vibrio fischeri MJ11] gi|197316825|gb|ACH66272.1| RNA methyltransferase TrmH, group 1 [Vibrio fischeri MJ11] Length = 241 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 18/52 (34%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA + G E GL + + + +LN++ A Y + Sbjct: 106 THPIAFVFGRERVGLTNEELQKCHFHVCIPANPEYSSLNLAMAVQTISYEAR 157 >gi|152971395|ref|YP_001336504.1| tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895989|ref|YP_002920725.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|330007729|ref|ZP_08306055.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS 92-3] gi|166234837|sp|A6TCF3|TRMJ_KLEP7 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|150956244|gb|ABR78274.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548307|dbj|BAH64658.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328535342|gb|EGF61825.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS 92-3] Length = 244 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A V Y + Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|254363345|ref|ZP_04979391.1| hypothetical RNA methyltransferase (RNA methylase) [Mycobacterium tuberculosis str. Haarlem] gi|134148859|gb|EBA40904.1| hypothetical RNA methyltransferase (RNA methylase) [Mycobacterium tuberculosis str. Haarlem] Length = 220 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+ G EG G+ + A + G +++N AA +A++ Sbjct: 158 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 212 >gi|146312670|ref|YP_001177744.1| RNA methyltransferase [Enterobacter sp. 638] gi|145319546|gb|ABP61693.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter sp. 638] Length = 244 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A V Y + Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|15607521|ref|NP_214894.1| RNA methyltransferase [Mycobacterium tuberculosis H37Rv] gi|15839764|ref|NP_334801.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] gi|31791557|ref|NP_854050.1| RNA methyltransferase [Mycobacterium bovis AF2122/97] gi|121636293|ref|YP_976516.1| putative rna methyltransferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|167968518|ref|ZP_02550795.1| hypothetical RNA methyltransferase (RNA methylase) [Mycobacterium tuberculosis H37Ra] gi|218752007|ref|ZP_03530803.1| putative rna methyltransferase [Mycobacterium tuberculosis GM 1503] gi|224988765|ref|YP_002643452.1| putative RNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|289441759|ref|ZP_06431503.1| RNA methyltransferase [Mycobacterium tuberculosis T46] gi|289572965|ref|ZP_06453192.1| RNA methyltransferase [Mycobacterium tuberculosis K85] gi|289752409|ref|ZP_06511787.1| RNA methyltransferase [Mycobacterium tuberculosis EAS054] gi|289760491|ref|ZP_06519869.1| RNA methyltransferase (RNA methylase) [Mycobacterium tuberculosis GM 1503] gi|297632862|ref|ZP_06950642.1| putative RNA methyltransferase [Mycobacterium tuberculosis KZN 4207] gi|297729837|ref|ZP_06958955.1| putative RNA methyltransferase [Mycobacterium tuberculosis KZN R506] gi|313657166|ref|ZP_07814046.1| putative RNA methyltransferase [Mycobacterium tuberculosis KZN V2475] gi|2909501|emb|CAA17386.1| POSSIBLE RNA METHYLTRANSFERASE (RNA METHYLASE) [Mycobacterium tuberculosis H37Rv] gi|13879892|gb|AAK44615.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] gi|31617143|emb|CAD93250.1| POSSIBLE RNA METHYLTRANSFERASE (RNA METHYLASE) [Mycobacterium bovis AF2122/97] gi|121491940|emb|CAL70403.1| Possible rna methyltransferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224771878|dbj|BAH24684.1| putative RNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|289414678|gb|EFD11918.1| RNA methyltransferase [Mycobacterium tuberculosis T46] gi|289537396|gb|EFD41974.1| RNA methyltransferase [Mycobacterium tuberculosis K85] gi|289692996|gb|EFD60425.1| RNA methyltransferase [Mycobacterium tuberculosis EAS054] gi|289707997|gb|EFD72013.1| RNA methyltransferase (RNA methylase) [Mycobacterium tuberculosis GM 1503] Length = 183 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+ G EG G+ + A + G +++N AA +A++ Sbjct: 121 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 175 >gi|148660146|ref|YP_001281669.1| RNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|148821576|ref|YP_001286330.1| RNA methyltransferase [Mycobacterium tuberculosis F11] gi|215429200|ref|ZP_03427119.1| RNA methyltransferase [Mycobacterium tuberculosis EAS054] gi|253797303|ref|YP_003030304.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 1435] gi|260199377|ref|ZP_05766868.1| RNA methyltransferase [Mycobacterium tuberculosis T46] gi|260203529|ref|ZP_05771020.1| RNA methyltransferase [Mycobacterium tuberculosis K85] gi|148504298|gb|ABQ72107.1| RNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|148720103|gb|ABR04728.1| hypothetical RNA methyltransferase (RNA methylase) [Mycobacterium tuberculosis F11] gi|253318806|gb|ACT23409.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 1435] Length = 220 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+ G EG G+ + A + G +++N AA +A++ Sbjct: 158 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 212 >gi|312868266|ref|ZP_07728466.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus parasanguinis F0405] gi|311096011|gb|EFQ54255.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus parasanguinis F0405] Length = 180 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 2/146 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + +L Sbjct: 17 IVLFQPQIPQNTGNIARTCAATNSPLHIIRPMAFPIDDRKMKRAGLDYWDKLDVRFYDSL 76 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 + ++ + ++ + G E KGL ++ + Sbjct: 77 EEFMEAASDGQVHLVSKFANQTYSDVSYQDGKSHYFLFGREDKGLPEDFMRQHEEKAIRI 136 Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279 M +++LNVSN + +Y Sbjct: 137 PMNDEHVRSLNVSNTVCMIVYEALRQ 162 >gi|322385965|ref|ZP_08059605.1| TrmH family RNA methyltransferase [Streptococcus cristatus ATCC 51100] gi|321269948|gb|EFX52868.1| TrmH family RNA methyltransferase [Streptococcus cristatus ATCC 51100] Length = 183 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 57/168 (33%), Gaps = 3/168 (1%) Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + + + + + Q +VL P N G I R+ A + I P + Sbjct: 1 MWLFFYSNENQEKIMSQQNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRK 60 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + ++ + + +L D +++M + ++ E + G Sbjct: 61 MKRAGLDYWDKLDISFYESLDDFMKQMDGRLYLIS-KFAEKVYSEENFSAEGPHYFMFGR 119 Query: 236 EGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 E GL + ++ + M +++LNVSN + +Y Sbjct: 120 EDTGLPEEFMRQHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 167 >gi|258404596|ref|YP_003197338.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM 5692] gi|257796823|gb|ACV67760.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM 5692] Length = 256 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 22/47 (46%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +A++ G E +GL + + + + +LN+S A + LY Sbjct: 117 VAVVFGPEDRGLSNEEIDICGQLLTIPTASEATSLNLSQAVLLVLYE 163 >gi|242277748|ref|YP_002989877.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio salexigens DSM 2638] gi|242120642|gb|ACS78338.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio salexigens DSM 2638] Length = 246 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+A++ G E +GL + + + ++ +LN+S A + LY + Sbjct: 109 EKVAVVFGPEDRGLTNDETQLCSRLINIPTSHENSSLNLSQAVLIILYECFKN 161 >gi|59711222|ref|YP_203998.1| methyltransferase [Vibrio fischeri ES114] gi|59479323|gb|AAW85110.1| predicted methyltransferase [Vibrio fischeri ES114] Length = 241 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 18/52 (34%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA + G E GL + + + +LN++ A Y + Sbjct: 106 THPIAFVFGRERVGLTNEELQKCHFHVCIPANPEYSSLNLAMAVQTISYEAR 157 >gi|37527165|ref|NP_930509.1| hypothetical protein plu3285 [Photorhabdus luminescens subsp. laumondii TTO1] gi|81418808|sp|Q7N222|TRMJ_PHOLL RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|36786599|emb|CAE15659.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 241 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 28/70 (40%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + Q+ ++ +A++ G E GL + + ++ +LN++ Sbjct: 88 WPMVEPRECGERSVQQAEHASVAIVFGRERVGLTNEELQKCHYHLNIPTNPEYGSLNLAM 147 Query: 268 AAAVALYITQ 277 A + Y + Sbjct: 148 AVQLVSYEIR 157 >gi|229493085|ref|ZP_04386880.1| spou rrna methylase family protein [Rhodococcus erythropolis SK121] gi|229320115|gb|EEN85941.1| spou rrna methylase family protein [Rhodococcus erythropolis SK121] Length = 230 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L+ G EG G+ +E A+ + G +++N AA +A++ Sbjct: 168 LPRECILLFGQEGPGVTDHAKEVASMTVSIAQFGSTRSINAGVAAGIAMHAWVR 221 >gi|315633898|ref|ZP_07889187.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Aggregatibacter segnis ATCC 33393] gi|315477148|gb|EFU67891.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Aggregatibacter segnis ATCC 33393] Length = 255 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + K+A++ G E GL + + +LN++ A + Y + Sbjct: 120 SGKVAIVFGRERVGLTNEELLKCHYHVTIPANPDYASLNLAMAVQLISYEIR 171 >gi|269103289|ref|ZP_06155986.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163187|gb|EEZ41683.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 243 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A++ G E GL + ++ +LN++ A Y + Sbjct: 106 SHPVAILFGRERTGLTNDELQKCHCHVYIPANPEYSSLNLAMAVQTISYEIR 157 >gi|229817083|ref|ZP_04447365.1| hypothetical protein BIFANG_02339 [Bifidobacterium angulatum DSM 20098] gi|229784872|gb|EEP20986.1| hypothetical protein BIFANG_02339 [Bifidobacterium angulatum DSM 20098] Length = 275 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 P+E + ++ GAEG GL K E A + ++ G ++++N AAAV+++ Sbjct: 209 PMETYRFPKRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMHAWIA 268 Query: 279 H 279 Sbjct: 269 Q 269 >gi|323494811|ref|ZP_08099909.1| rRNA methylase [Vibrio brasiliensis LMG 20546] gi|323310951|gb|EGA64117.1| rRNA methylase [Vibrio brasiliensis LMG 20546] Length = 241 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 25/70 (35%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + E +N +AL+ G E GL +T + +LN++ Sbjct: 88 WPMLEPRECGEKFVAEGQNSPVALVFGRERTGLTNDELQTCHYHVCIPANPEYSSLNLAM 147 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 148 AVQTLSYEVR 157 >gi|257060219|ref|YP_003138107.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 8802] gi|256590385|gb|ACV01272.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 8802] Length = 243 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 20/49 (40%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ALI G E +GL + A + +LN++ + AV Y Sbjct: 109 ALIFGPEDRGLSNEELNYAQRFVCIPSNSEYPSLNLAQSVAVCTYELYQ 157 >gi|194398514|ref|YP_002037156.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae G54] gi|194358181|gb|ACF56629.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae G54] Length = 167 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L D + +M + ++ ++ + G E KGL +E Sbjct: 61 YESLEDFISQMKGKLYLIS-KFAEKIYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPDK 119 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151 >gi|218247147|ref|YP_002372518.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801] gi|218167625|gb|ACK66362.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 8801] Length = 243 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 20/49 (40%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ALI G E +GL + A + +LN++ + AV Y Sbjct: 109 ALIFGPEDRGLSNEELNYAQRFVCIPSNSEYPSLNLAQSVAVCTYELYQ 157 >gi|330840210|ref|XP_003292112.1| hypothetical protein DICPUDRAFT_40046 [Dictyostelium purpureum] gi|325077666|gb|EGC31364.1| hypothetical protein DICPUDRAFT_40046 [Dictyostelium purpureum] Length = 323 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 24/57 (42%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 K I +++G E G+ + L M G +LNVS + YI +HF Sbjct: 260 KYRPICVVMGNEIAGISEHVINECDIICELPMLGNKNSLNVSITFGIVSYILSHHFK 316 >gi|322390062|ref|ZP_08063597.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 903] gi|321143189|gb|EFX38632.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 903] Length = 180 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 2/146 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + +L Sbjct: 17 IVLFQPQIPQNTGNIARTCAATNSPLHIIRPMAFPIDDRKMKRAGLDYWDKLDVRFYDSL 76 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 + ++ + ++ + G E KGL ++ + Sbjct: 77 EEFMEAARDGQVHLVSKFANQTYSDVSYQDGKSHYFLFGREDKGLPEDFMRQHEEKAIRI 136 Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279 M +++LNVSN + +Y Sbjct: 137 PMNDEHVRSLNVSNTVCMIVYEALRQ 162 >gi|312277678|gb|ADQ62335.1| RRNA methyltransferase, TrmH family [Streptococcus thermophilus ND03] Length = 169 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 52/151 (34%), Gaps = 2/151 (1%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 S +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MSCNHIVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDIT 60 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETAT 249 NL D + K H+ + +D E + + G E GL +E Sbjct: 61 YYDNLADFMSKNHAGRLHLVTKFADKTYSEEVYADGEDHYFMFGREDTGLPEDFMREHPE 120 Query: 250 SMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LNVSN + +Y Sbjct: 121 KAIRIPMNDEHVRSLNVSNTVCMIVYEALRQ 151 >gi|312864593|ref|ZP_07724824.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus downei F0415] gi|311099720|gb|EFQ57933.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus downei F0415] Length = 182 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 3/165 (1%) Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 + +VL P N G I R+ A + I P + Sbjct: 1 MVVQPFIQENYHETQGRNHVVLFEPQIPANTGNIARTCAATNSPLHIIRPMGFPINDRKM 60 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 ++ + + +L + L K + + + D I G E Sbjct: 61 KRAGLDYWDKLDIRFYDSLLEFLDKCQGQVHLVSKFAQKTYSEVNYADDQDH-YFIFGRE 119 Query: 237 GKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279 KGL +E T + M +++LN+SN + +Y Sbjct: 120 DKGLPEDFMREHVTKAIRIPMNDQHVRSLNLSNTVCMIVYEALRQ 164 >gi|256822726|ref|YP_003146689.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069] gi|256796265|gb|ACV26921.1| RNA methyltransferase, TrmH family, group 1 [Kangiella koreensis DSM 16069] Length = 277 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 22/51 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + ++ +LN+++A + Y + Sbjct: 121 RPVAIMFGRESTGLLNEELQLCHYHVNIPANPEYMSLNLASAVQLIAYEIR 171 >gi|255079034|ref|XP_002503097.1| predicted protein [Micromonas sp. RCC299] gi|226518363|gb|ACO64355.1| predicted protein [Micromonas sp. RCC299] Length = 204 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYITQ 277 A I G EG GL + + ++ G +LNV+ A+A+ ++ Sbjct: 87 HPFAQNTAFIAGNEGDGLTKQQKAICDGFVYIRQHGVGTASLNVAVASALVMHHFA 142 >gi|332292383|ref|YP_004430992.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] gi|332170469|gb|AEE19724.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] Length = 153 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 7/155 (4%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 D N + + + P N+G + RSA I T +S+ + Sbjct: 1 MQPDNFTNEFFGIGIQNGKTPENLGVLWRSAQNLGASFIFTIGNRYAKQSSDTHNAVKAM 60 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + + + G + + + + +LGAE GL + Sbjct: 61 PYYHYDTFDDFFKHLPKGVRIVGVELDDRAETLETFHH----PRRCVYLLGAEDHGLTNE 116 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 E + + +LNVS A ++ LY Sbjct: 117 AIEKSHFLIKFP---STLSLNVSVAGSIVLYDRTR 148 >gi|328708118|ref|XP_003243604.1| PREDICTED: hypothetical protein LOC100571270 [Acyrthosiphon pisum] Length = 1388 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + K L+LG E G+ T + GI+++LNV A ++ ++ Sbjct: 1323 HEMNLPFKCVLLLGNETSGIPHDLLSTMDICVEIKQLGIVRSLNVHVAGSLFIWEYTKQ 1381 >gi|293571560|ref|ZP_06682582.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E980] gi|291608366|gb|EFF37666.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E980] Length = 170 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I R+ A + + ++ L ++ + Sbjct: 4 MNHIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYH 63 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251 S+L L + I + E ++ + G E GL +E Sbjct: 64 SDLEAFLAFLGDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPEAFMRENEEKC 123 Query: 252 AHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 124 LRIPMNDEHVRSLNLSNTAAMIVYEALRQ 152 >gi|78356021|ref|YP_387470.1| RNA methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218426|gb|ABB37775.1| RNA methyltransferase, TrmH family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 253 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++A++ G E +GL + E + + + +LN++ A + LY Sbjct: 110 GRVAIVFGREDRGLTNEETEVCSRLVTIPTS-EASSLNLAQAVLILLYE 157 >gi|227893169|ref|ZP_04010974.1| SpoU family RNA methyltransferase [Lactobacillus ultunensis DSM 16047] gi|227865035|gb|EEJ72456.1| SpoU family RNA methyltransferase [Lactobacillus ultunensis DSM 16047] Length = 186 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 48/151 (31%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ + ++ + + Sbjct: 1 MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDVRM 60 Query: 192 ISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248 +L L+ + + SS + ++ + G E GL +E Sbjct: 61 HDDLDAFLKTLGPNDEMYLISKFSSKNYAEVDYTDPKKNYYFVFGKETTGLPETFMREYY 120 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I+ N+SN+ A+ L Sbjct: 121 DRNLRIPMSNNIRCYNLSNSVAMVLLEALRQ 151 >gi|224370153|ref|YP_002604317.1| TrmH2 [Desulfobacterium autotrophicum HRM2] gi|223692870|gb|ACN16153.1| TrmH2 [Desulfobacterium autotrophicum HRM2] Length = 247 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 23/51 (45%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ AL++G E GL E + ++N+S+A A+ LY Sbjct: 108 TNQCALVMGREDHGLYTSELELCQRFVTIPTENAYGSMNLSHATALLLYQA 158 >gi|256587794|gb|ACU98926.1| rRNA methylase family protein [Propionibacterium jensenii] Length = 169 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 6/148 (4%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + + ++ L+V + + D N+GAI+R A DG++ R + K++ G Sbjct: 7 WSEADLMSADRLVVCEDIVDHTNVGAIIRCAAGLGWDGVLLAPRAADPLYRRAIKTSMGT 66 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK------NDKIALILGAEG 237 + +P+ R+S+ L + GF ++ E K+AL++G EG Sbjct: 67 VFALPWARLSDWCQGLGHLKEHGFTIAAMALSDDSVSLDEFAAQLRSRPRKVALLMGTEG 126 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNV 265 GL A + + M + +LNV Sbjct: 127 AGLSSHWVNQADVVVRIPMHHGVDSLNV 154 >gi|56461142|ref|YP_156423.1| rRNA methyltransferase [Idiomarina loihiensis L2TR] gi|56180152|gb|AAV82874.1| rRNA methyltransferase, TrmH family [Idiomarina loihiensis L2TR] Length = 240 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++AL+ G E GL + + + H+ +LN++ A Y + Sbjct: 106 QHQVALVFGRENSGLTNEELQQSQFHLHIPTNPDYSSLNLAMAVQTVSYELRMQ 159 >gi|283853704|ref|ZP_06370934.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B] gi|283570914|gb|EFC18944.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B] Length = 250 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +A++ G E GL + + + ++ G +LN++ A V Y Sbjct: 109 GGVAVVFGPEDAGLSNQETQLCGRLVNIPTAGEATSLNLAQAVLVVCYEVFK 160 >gi|224369437|ref|YP_002603601.1| rRNA methylase-family protein [Desulfobacterium autotrophicum HRM2] gi|223692154|gb|ACN15437.1| rRNA methylase-family protein [Desulfobacterium autotrophicum HRM2] Length = 161 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 3/109 (2%) Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + + IP D + D+ L++ + + Sbjct: 49 YSRQPGDVTRTWTRIPLFHHDTFEDFYSHLPHDTRLIGVEMGDTAVALDRFDHPSRAVYL 108 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 LG E GL P E + L +LNV+ A ++ +Y + + Sbjct: 109 LGNEQLGLSPGVMEKCHRLVKLP---GAFSLNVAVAGSLVMYDRVSKIS 154 >gi|40063429|gb|AAR38240.1| RNA methyltransferase, TrmH family, group 1 [uncultured marine bacterium 580] Length = 248 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + KIAL+ G E GL + + +++ +LN++ A + Y + ++ Sbjct: 112 SKKIALLFGNETNGLSNDEVKHCHMLGYINSNTKYSSLNLAQAIQIICYEIRMQLSE 168 >gi|254777225|ref|ZP_05218741.1| spou rRNA methylase family protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 218 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+ G EG G+ T+ AT + G +++N AA +A++ Sbjct: 156 LPRECLLVFGQEGPGITDDTRTGATLTVSIAQFGSTRSINAGVAAGIAMHAWIQQ 210 >gi|118462459|ref|YP_883915.1| spou rRNA methylase family protein [Mycobacterium avium 104] gi|118163746|gb|ABK64643.1| spou rRNA methylase family protein [Mycobacterium avium 104] Length = 214 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+ G EG G+ T+ AT + G +++N AA +A++ Sbjct: 152 LPRECLLVFGQEGPGITDDTRTGATLTVSIAQFGSTRSINAGVAAGIAMHAWIQQ 206 >gi|41409957|ref|NP_962793.1| hypothetical protein MAP3859 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398790|gb|AAS06409.1| hypothetical protein MAP_3859 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 219 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+ G EG G+ T+ AT + G +++N AA +A++ Sbjct: 157 LPRECLLVFGQEGPGITDDTRTGATLTVSIAQFGSTRSINAGVAAGIAMHAWIQQ 211 >gi|325265919|ref|ZP_08132605.1| RNA methyltransferase [Kingella denitrificans ATCC 33394] gi|324982557|gb|EGC18183.1| RNA methyltransferase [Kingella denitrificans ATCC 33394] Length = 271 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 20/54 (37%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +AL+ G E GL + + + +LN++ A V Y + Sbjct: 134 RQSVALVFGNETFGLSIDEVQHCNRLMTISGNPDYFSLNLAQAVQVVCYELFSQ 187 >gi|254509335|ref|ZP_05121424.1| RNA methyltransferase, TrmH family, group 1 [Vibrio parahaemolyticus 16] gi|219547731|gb|EED24767.1| RNA methyltransferase, TrmH family, group 1 [Vibrio parahaemolyticus 16] Length = 241 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 25/70 (35%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + +E ++ +AL+ G E GL +T + +LN++ Sbjct: 88 WPMLEPRECGVKFVEEGQSAPVALVFGRERTGLTNDELQTCHYHVCIPANPEYSSLNLAM 147 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 148 AVQTLSYEVR 157 >gi|183980676|ref|YP_001848967.1| RNA methyltransferase [Mycobacterium marinum M] gi|183174002|gb|ACC39112.1| RNA methyltransferase [Mycobacterium marinum M] Length = 214 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G EG G+ T+ A + G +++N AA +A++ Sbjct: 152 LPRDCLLVFGQEGPGITDDTRVGAVVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 206 >gi|326429925|gb|EGD75495.1| hypothetical protein PTSG_06570 [Salpingoeca sp. ATCC 50818] Length = 1687 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 28/100 (28%) Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 + + + L Q + L+LG E KG Sbjct: 1583 SERWQHFEFVEPANLTEWLRSMKQQGYTIVGVEQTADSVSLPQVKFPEYTVLLLGDEAKG 1642 Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + G+ ++LNV +A++ +Y Sbjct: 1643 IPADLLTETDVNVEIPQKGVTRSLNVHVSASLLIYKYAEQ 1682 >gi|322377138|ref|ZP_08051630.1| RNA methyltransferase, TrmH family [Streptococcus sp. M334] gi|321281851|gb|EFX58859.1| RNA methyltransferase, TrmH family [Streptococcus sp. M334] Length = 180 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 3/165 (1%) Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L + + +VL P N G I R+ A + I P + + + Sbjct: 1 MWLFFCNGERKQVMTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKR 60 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + + + +L D + +M + ++ ++ + G E K Sbjct: 61 AGLDYWDKLEIYFYESLEDFMSQMEGKLYLIS-KFAEKVYSEVDLSTDENHYFLFGREDK 119 Query: 239 GLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 GL +E + M +++LNVSN + +Y Sbjct: 120 GLPEDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 164 >gi|27363908|ref|NP_759436.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus CMCP6] gi|320157287|ref|YP_004189666.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus MO6-24/O] gi|27360025|gb|AAO08963.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus CMCP6] gi|319932599|gb|ADV87463.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus MO6-24/O] Length = 242 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 24/70 (34%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + QE + +AL+ G E GL + + +LN++ Sbjct: 88 WPMLEPFECAEKFVQEGQTSHVALVFGRERTGLTNDELQRCHYHVCIPANPEYSSLNLAM 147 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 148 AVQTLSYEVR 157 >gi|170289746|ref|YP_001736562.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Korarchaeum cryptofilum OPF8] gi|170173826|gb|ACB06879.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Korarchaeum cryptofilum OPF8] Length = 246 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 23/46 (50%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L+LG E GL + +A + ALNV+NAAA+ LY Sbjct: 109 LVLGRESIGLTTEELSYCDIVATIPSSEDYPALNVANAAAIILYEF 154 >gi|322387233|ref|ZP_08060843.1| TrmH family RNA methyltransferase [Streptococcus infantis ATCC 700779] gi|321141762|gb|EFX37257.1| TrmH family RNA methyltransferase [Streptococcus infantis ATCC 700779] Length = 167 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MANHIVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 L + ++K+ + ++ + G E KGL + +E Sbjct: 61 YDCLDEFMKKIDGQLYLIS-KFAEKVYSDADFTIEGNHYFLFGREDKGLPEEFMREHPEK 119 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151 >gi|260598924|ref|YP_003211495.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Cronobacter turicensis z3032] gi|260218101|emb|CBA32873.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Cronobacter turicensis z3032] Length = 246 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + +LN++ A V Y + Sbjct: 108 PVAIVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVVAYEVR 157 >gi|260436456|ref|ZP_05790426.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. WH 8109] gi|260414330|gb|EEX07626.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. WH 8109] Length = 248 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +AL+ G E +GL + L +LN+S+A AV L+ Sbjct: 112 PVALVFGREDRGLSNSELRLCQRVLCLQSGEAYPSLNLSHAVAVVLHELAR 162 >gi|37678937|ref|NP_933546.1| rRNA methylase [Vibrio vulnificus YJ016] gi|37197679|dbj|BAC93517.1| rRNA methylase [Vibrio vulnificus YJ016] Length = 242 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 24/70 (34%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + QE + +AL+ G E GL + + +LN++ Sbjct: 88 WPMLEPFECAEKFVQEGQTSHVALVFGRERTGLTNDELQRCHYHVCIPANPEYSSLNLAM 147 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 148 AVQTLSYEVR 157 >gi|15828342|ref|NP_302605.1| RNA methyltransferase [Mycobacterium leprae TN] gi|221230819|ref|YP_002504235.1| putative RNA methyltransferase [Mycobacterium leprae Br4923] gi|13094035|emb|CAC32002.1| possible RNA methyltransferase [Mycobacterium leprae] gi|219933926|emb|CAR72584.1| possible RNA methyltransferase [Mycobacterium leprae Br4923] Length = 182 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+ G EG G+ + + A + + G +++N AA +A++ Sbjct: 120 LPRQCLLVFGQEGPGITDEARTGAAMIVSIAQFGSTRSINAGVAAGIAMHAWIRQ 174 >gi|319949900|ref|ZP_08023903.1| putative RNA methyltransferase [Dietzia cinnamea P4] gi|319436438|gb|EFV91555.1| putative RNA methyltransferase [Dietzia cinnamea P4] Length = 227 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L+ G EG G+ + A + G +++N AA +A++ Sbjct: 169 LPRECVLLFGQEGPGVSDDARLRAARTVSIAQFGSTRSINAGVAAGIAMHAWIR 222 >gi|312862562|ref|ZP_07722804.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus vestibularis F0396] gi|311101967|gb|EFQ60168.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus vestibularis F0396] Length = 169 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 2/146 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + NL Sbjct: 6 IVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDNL 65 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 D + K H+ + +D E + + G E GL +E + Sbjct: 66 ADFMSKNHAGRLHLVTKFADKTYSEEAYADGEDHYFMFGREDTGLPEDFMREHPEKAIRI 125 Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279 M +++LNVSN + +Y Sbjct: 126 PMNDEHVRSLNVSNTVCMIVYEALRQ 151 >gi|258614728|ref|ZP_05712498.1| RNA methyltransferase [Enterococcus faecium DO] gi|293553070|ref|ZP_06673712.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E1039] gi|293568336|ref|ZP_06679659.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E1071] gi|294621972|ref|ZP_06701117.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium U0317] gi|291588945|gb|EFF20770.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E1071] gi|291598451|gb|EFF29523.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium U0317] gi|291602779|gb|EFF32989.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E1039] Length = 170 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I R+ A + + ++ L ++ + Sbjct: 4 MNHIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYH 63 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251 SNL L + + I + E ++ + G E GL +E Sbjct: 64 SNLEAFLTFLGNRKLHLISKFAHKVYSDENFADGEEHFFLFGKETTGLPETFMRENEEKC 123 Query: 252 AHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 124 LRIPMNDEHVRSLNLSNTAAMIVYEALRQ 152 >gi|87302133|ref|ZP_01084958.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701] gi|87283058|gb|EAQ75014.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701] Length = 262 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 AL+ G E +GL A + + +LN+S+A A+ L+ + Sbjct: 125 ALVFGREDRGLSTDELLQAGRILRISTDDGYTSLNLSHAVAITLHELRR 173 >gi|150015482|ref|YP_001307736.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB 8052] gi|149901947|gb|ABR32780.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB 8052] Length = 162 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 2/67 (2%) Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKALNVSNAAAVAL 273 + ++ + ++ G E G+ + + M ++LN+SN A+ Sbjct: 91 HGETHFDEISFKEGDFIMFGRESSGVPEEVHNR-HIGFRVPMIKSSTRSLNLSNTVAIVA 149 Query: 274 YITQNHF 280 Y Sbjct: 150 YEALRQI 156 >gi|303282009|ref|XP_003060296.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457767|gb|EEH55065.1| predicted protein [Micromonas pusilla CCMP1545] Length = 463 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 83/209 (39%), Gaps = 23/209 (11%) Query: 91 FPVKTVPPQTIDKIVG-KEAVHQGLALETAPLLSPTLDAVRNS-------------QLLM 136 ++TV ++ + G H G+ L+ + L +D + + + Sbjct: 242 VEIETVSKHDLNVLTGSPPRPHNGVVLDASALTPTPIDQLPRWVHGEGSSTVKGPAPVWL 301 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--SN 194 LD V DP N+GA+LRSA G++ + S S V++K+++GALE + + + Sbjct: 302 ALDEVVDPQNLGAVLRSAKFLGVAGVVVCAKNSAPLSPVVSKASAGALESMDVRSVGVMH 361 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 W + + + + L++G EG GLR + TSM + Sbjct: 362 RFLMRCVEDGWDVYGTAAEEGAADVADVDARGRPSVLVMGNEGAGLRTNVRRACTSMLRI 421 Query: 255 -------HMPGIIKALNVSNAAAVALYIT 276 + +LNVS A V L+ Sbjct: 422 AGGGGEGDDDDGVDSLNVSVATGVILHAM 450 >gi|86133883|ref|ZP_01052465.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] gi|85820746|gb|EAQ41893.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] Length = 171 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 5/163 (3%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 + + + + +V D + P NIG R + +F + I + E+ + +A Sbjct: 6 HNDVENQQQKFPITIVCDAIRTPENIGMCFRISESFGVEKIYFHENSPSIENRKVINTAR 65 Query: 182 GALE---HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + + Y L L++ + K +KI L+LG+E Sbjct: 66 NTINQIEYQTYSEFDQLIQELKQKGNTIIGIEITDKSIDIQDFDFKKYEKIVLLLGSERN 125 Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 G+ + + M G ++NV ++ A+ LY N Sbjct: 126 GI--ENINLVDETIAIPMYGRNSSMNVIHSLAITLYEITNQLK 166 >gi|42523135|ref|NP_968515.1| 23S rRNA methyltransferase [Bdellovibrio bacteriovorus HD100] gi|39575340|emb|CAE79508.1| 23S rRNA methyltransferase [Bdellovibrio bacteriovorus HD100] Length = 251 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 45/252 (17%), Positives = 92/252 (36%), Gaps = 14/252 (5%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 + + +++ + +R + L G + L NP+ +I + ++ + Sbjct: 6 SKTNDHFRRWSDLS-SARGIKKHSEFILMGEKLIEEFLENPNFRIKGEIVHEDLKSVTMT 64 Query: 84 DANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142 L PV +P ++I + V L ++ L V+ + Sbjct: 65 APKLKGQRIPVFKLPKALFNEI---DVVGTHYNLLVLEPKEIAPLTTAKAEGLEVISPLG 121 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 DP N+GA+ RS++AF +I T+ K+++GAL +P +I D + Sbjct: 122 DPSNLGALARSSLAFGASKMILTEESCSPYHPKAIKASAGALLKLPLFKIGKFADFVSNN 181 Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + + + + LG EG G + + +++ Sbjct: 182 DQI-----YALDMKGESVANFKWPKNVRIALGEEGPGFS-GIKNL--QRLSVATQ-SVES 232 Query: 263 LNVSNAAAVALY 274 LN + A ++ALY Sbjct: 233 LNATVAGSIALY 244 >gi|322411182|gb|EFY02090.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 181 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + +L Sbjct: 19 VVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDVRFYDSL 78 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 D + + + + + G E GL +E + Sbjct: 79 EDFITQCQGKLHLISKFADKVYSEETYAD-DQPHYFLFGREDTGLPEAFMREHTEKALRI 137 Query: 255 HMPGI-IKALNVSNAAAVALYITQNH 279 M +++LNVSN + +Y Sbjct: 138 PMNDDHVRSLNVSNTVCMIVYEALRQ 163 >gi|163761614|ref|ZP_02168685.1| tRNA/rRNA methyltransferase [Hoeflea phototrophica DFL-43] gi|162281210|gb|EDQ31510.1| tRNA/rRNA methyltransferase [Hoeflea phototrophica DFL-43] Length = 155 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 3/153 (1%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 ++ L+ L + P N GAI+R I L ++ +E Sbjct: 1 MTKPLIALYQPDIPGNTGAIMRLGACMGIGIHIIGPAGFDLSDRALKRAGMDYIEMATLT 60 Query: 191 RISNLTDALQKMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 R + + G + S+ S + + + ++ G E G + + Sbjct: 61 RHDGWEEFEAWRKAEGRRLVLMTTKSAVSYMDDTVQTLSAQDVVLFGRESVGAPERVHDA 120 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 A + M ++LN++ + A+ F Sbjct: 121 ADLRLTIPMIEGRRSLNLAMSVAMVAGEINRRF 153 >gi|145628738|ref|ZP_01784538.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 22.1-21] gi|144979208|gb|EDJ88894.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 22.1-21] Length = 184 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 KIA++ G E GL + ++ +LN++ A + Y + Sbjct: 102 YKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR 154 >gi|68071813|ref|XP_677820.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56498081|emb|CAH95522.1| conserved hypothetical protein [Plasmodium berghei] Length = 300 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 41/282 (14%), Positives = 88/282 (31%), Gaps = 45/282 (15%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---------ARLDWDANLPHPFPV 93 ++ + ++YG+++V + L RKI + + KN + V Sbjct: 17 QNKNDIDYIYGLNSVYSVLKKNERKIDKAIINKNIKRSKKIHKEAYDYILNTIKERNIQV 76 Query: 94 KTVPPQTIDKIVGKEAVHQG----LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 + ++VG + N+ + + L +V D N+G Sbjct: 77 VYKTKNEMCELVGGFPHNDIIIELYRYMKNYRHFINSKKTTNNNIYICLHNVYDNMNVGN 136 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVL----------------AKSASGALEHIPYIRIS 193 I RS + F + I ++ E + +I Sbjct: 137 ICRSVLFFGGESIFLKRKRKKGEHKNYIKINTPILHSSVGASEYLNFFHVNNMENFISSL 196 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 S +++ + + KN+K+ +ILG E KGL + + + Sbjct: 197 KEKGFTILSTSSPKNNTQMTNFVELKNVKINKNEKVMIILGNESKGLNEDIIKNSDICIY 256 Query: 254 L----------HMPGI------IKALNVSNAAAVALYITQNH 279 + + +LNV+N ++ L+ ++ Sbjct: 257 INNLFDEQNIQPNLKNTNDNIIVNSLNVNNVCSIILHHFHSN 298 >gi|331664149|ref|ZP_08365059.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA143] gi|331059948|gb|EGI31925.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA143] Length = 123 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 22/55 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 66 LPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 120 >gi|117624802|ref|YP_853715.1| tRNA/rRNA methyltransferase YfiF [Escherichia coli APEC O1] gi|115513926|gb|ABJ02001.1| tRNA/rRNA methyltransferase YfiF [Escherichia coli APEC O1] Length = 123 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 22/55 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K+ L+LG E +GL ++ + G + LN+S A V L Sbjct: 66 LPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 120 >gi|171320744|ref|ZP_02909755.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria MEX-5] gi|171094009|gb|EDT39111.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria MEX-5] Length = 273 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 127 CMQVGTGDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELR 183 >gi|156932916|ref|YP_001436832.1| hypothetical protein ESA_00719 [Cronobacter sakazakii ATCC BAA-894] gi|166234836|sp|A7MGX5|TRMJ_ENTS8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|156531170|gb|ABU75996.1| hypothetical protein ESA_00719 [Cronobacter sakazakii ATCC BAA-894] Length = 245 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + +LN++ A V Y + Sbjct: 108 PVAIVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|311278537|ref|YP_003940768.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae SCF1] gi|308747732|gb|ADO47484.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae SCF1] Length = 242 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + +LN++ A V Y + Sbjct: 108 PVALVFGRERVGLTNDELQKCNYHVAIAANPEYSSLNLAMAVQVIAYEVR 157 >gi|169631336|ref|YP_001704985.1| putative RNA methyltransferase [Mycobacterium abscessus ATCC 19977] gi|169243303|emb|CAM64331.1| Putative RNA methyltransferase [Mycobacterium abscessus] Length = 224 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 63/195 (32%), Gaps = 5/195 (2%) Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDP 144 L P+ P + + +A + A + D R +L + +++ + Sbjct: 26 ELERGLPLPEDPRYDPELLRDGDARNVVDAYRYWRREAIVADIDRRRHRLHIAIENFEND 85 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 NIG ++R+A AF+ + R + + L H + Sbjct: 86 ANIGTVVRTANAFAVHTVHIVGRRRWNRRGAMVTDRYQHLMHHDSTDELLDYAKRAGLTV 145 Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + S + L+ G EG G+ ++ A + G +++N Sbjct: 146 VAVDNVPGSVPLET----AELPVDCLLVFGQEGPGVTDASKSGAVMTVSIAQFGSTRSIN 201 Query: 265 VSNAAAVALYITQNH 279 AA +A++ Sbjct: 202 AGVAAGIAMHAWVRQ 216 >gi|15805267|ref|NP_293955.1| RNA methyltransferase [Deinococcus radiodurans R1] gi|6457905|gb|AAF09819.1|AE001885_3 RNA methyltransferase, putative [Deinococcus radiodurans R1] Length = 158 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 2/149 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL N+G + R+ + + + + A + Sbjct: 11 LHVVLFEPEKAGNVGNVARTCSVLGAELHLIRP-FGFHLHDREFRRAVMDYLQGVTLHEY 69 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 Q + S+ + + + L+ G E +GL ++ Sbjct: 70 AGWSDFQAQLPDAARVFAFSTHATEYHTRAGFKRGDYLLFGPESRGLPVWLRDAL-PKLK 128 Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFAK 282 L PG ++LN+S A A + + Sbjct: 129 LPQPGRGRSLNLSVAVGAAAFEAGRQIER 157 >gi|88812653|ref|ZP_01127900.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1 [Nitrococcus mobilis Nb-231] gi|88790069|gb|EAR21189.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1 [Nitrococcus mobilis Nb-231] Length = 243 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 18/49 (36%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +AL+ G E GL + H+ LN++ A + Y Sbjct: 109 PVALLFGREDSGLTNAQLSYCHGVVHIPANPAYPVLNLAAAVQIVCYEL 157 >gi|146302851|ref|YP_001190167.1| tRNA/rRNA methyltransferase SpoU [Metallosphaera sedula DSM 5348] gi|145701101|gb|ABP94243.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera sedula DSM 5348] Length = 231 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%) Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + + ++N K L+ G E GL + M H+ LN+S+A + LY Sbjct: 90 MPPWEIVKLMENRKTGLVFGRESVGLTREEILMTDIMVHIPANRSYPVLNLSHAVGIVLY 149 Query: 275 ITQN 278 Sbjct: 150 EIWK 153 >gi|322375851|ref|ZP_08050362.1| RNA methyltransferase, TrmH family [Streptococcus sp. C300] gi|321279119|gb|EFX56161.1| RNA methyltransferase, TrmH family [Streptococcus sp. C300] Length = 180 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 50/165 (30%), Gaps = 3/165 (1%) Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L +VL P N G I R+ A + I P + + + Sbjct: 1 MWLFFCNDKRKPVMTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKR 60 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + + + +L D + +M + + + + G E K Sbjct: 61 AGLDYWDKLEIYFYDSLEDFMSQMKGQVYLISKFAEKVYSEANLAS-GEDQYFLFGREDK 119 Query: 239 GLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 GL +E + M +++LNVSN + +Y Sbjct: 120 GLPEDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 164 >gi|289677967|ref|ZP_06498857.1| RNA methyltransferase [Pseudomonas syringae pv. syringae FF5] Length = 155 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 20/46 (43%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +AL+ G E GL + + H+ +LN++ A V Y Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSY 155 >gi|290579940|ref|YP_003484332.1| putative rRNA methylase [Streptococcus mutans NN2025] gi|254996839|dbj|BAH87440.1| putative rRNA methylase [Streptococcus mutans NN2025] Length = 182 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + +L Sbjct: 20 VVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDSL 79 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 D + + + + ++ + G E KGL + ++ + + Sbjct: 80 NDFMNICSGKLHLITKFADKTYSDENYDD-SEHHYFLFGREDKGLPEEFMRQHSEKALRI 138 Query: 255 HMPGI-IKALNVSNAAAVALYITQNH 279 M +++LN+SN + +Y Sbjct: 139 PMNDQHVRSLNLSNTVCMIVYEALRQ 164 >gi|302421720|ref|XP_003008690.1| rRNA methyltransferase [Verticillium albo-atrum VaMs.102] gi|261351836|gb|EEY14264.1| rRNA methyltransferase [Verticillium albo-atrum VaMs.102] Length = 610 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHL---H-MPGIIKALNVSNAAAVAL 273 L+LG EG+GL K A+ + + +LNVS AAA+ Sbjct: 528 KPCILVLGNEGEGLSRKIMSRASRQVTIQRQPAGRSSVDSLNVSVAAALLC 578 >gi|150403255|ref|YP_001330549.1| RNA methyltransferase [Methanococcus maripaludis C7] gi|150034285|gb|ABR66398.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus maripaludis C7] Length = 234 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N + ++ G E GL+ + E + + +N+S+A +V LY Sbjct: 101 HVELNGSLGIVFGREDDGLKNEDVELCDILVSVPTSNKYPIMNLSHAVSVLLYEIY 156 >gi|212696108|ref|ZP_03304236.1| hypothetical protein ANHYDRO_00644 [Anaerococcus hydrogenalis DSM 7454] gi|212676737|gb|EEB36344.1| hypothetical protein ANHYDRO_00644 [Anaerococcus hydrogenalis DSM 7454] Length = 152 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGII-KALNVSNAAAVALYITQNH 279 D I G E +G+ + + + M + ++LN++N+ A+ LY Sbjct: 91 YKDGDYFIFGREKEGIEKEILDKYKEKIYTIPMTKKLNRSLNLANSVAIVLYEGLRQ 147 >gi|161507184|ref|YP_001577138.1| hypothetical protein lhv_0705 [Lactobacillus helveticus DPC 4571] gi|260102476|ref|ZP_05752713.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM 20075] gi|160348173|gb|ABX26847.1| hypothetical protein lhv_0705 [Lactobacillus helveticus DPC 4571] gi|260083713|gb|EEW67833.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM 20075] gi|328461854|gb|EGF34076.1| hypothetical protein AAULH_03893 [Lactobacillus helveticus MTCC 5463] Length = 186 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ + ++ + + R Sbjct: 1 MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDVRR 60 Query: 192 ISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248 +L L+ + + SS + ++ N + G E GL +E Sbjct: 61 HDDLNAFLKTLGPNDEMYLISKFSSKNYVDVDYTDPNKNYYFVFGKETTGLPETFMREYY 120 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I+ N+SN+ A+ L Sbjct: 121 DRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 151 >gi|269957913|ref|YP_003327702.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM 15894] gi|269306594|gb|ACZ32144.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM 15894] Length = 283 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 22/57 (38%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+LG E GL Q + H+ G ++LN A A+A++ Sbjct: 222 FALPASCVLVLGQESTGLTAPMQAACDVVLHITQHGSTRSLNAGAAGAIAMFAWALQ 278 >gi|55820364|ref|YP_138806.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311] gi|55822253|ref|YP_140694.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066] gi|55736349|gb|AAV59991.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus LMG 18311] gi|55738238|gb|AAV61879.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus CNRZ1066] Length = 184 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 2/152 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + S+ +VL P N G I R+ A + I P + + ++ + + Sbjct: 15 QMSRNHIVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDI 74 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248 NL D + K H+ + +D E + + G E GL +E Sbjct: 75 TYYDNLADFMSKNHAGRLHLVTKFADKTYSEEVYADGEDHYFMFGREDTGLPEDFMREHP 134 Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LNVSN + +Y Sbjct: 135 EKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQ 166 >gi|332708821|ref|ZP_08428792.1| RNA methyltransferase, TrmH family, group 1 [Lyngbya majuscula 3L] gi|332352363|gb|EGJ31932.1| RNA methyltransferase, TrmH family, group 1 [Lyngbya majuscula 3L] Length = 288 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 18/50 (36%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ALI G E +GL A + LN++ A V Y + Sbjct: 133 ALIFGPESRGLSNDELNHAQRFVRIPTSSTYPVLNLAQAVTVCCYELYQY 182 >gi|296119026|ref|ZP_06837599.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes DSM 20306] gi|295968124|gb|EFG81376.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes DSM 20306] Length = 216 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 4/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + +++ + NIG ++R+A AF+ + + R + + LEH Sbjct: 63 RRHSLHIAIENFENDANIGTVVRTANAFAVNTVHIVGRRRWNRRGAMVTDRYQHLEHHDT 122 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + ++ S + ++ L+ G EG G+ + QE+A Sbjct: 123 VTELMAWAREHEIAVVAIDNTPGSVPLET----AQLPERCLLLFGQEGPGVTAEAQESAE 178 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G +++N AA +A++ Sbjct: 179 MTCSIAQFGSTRSINAGVAAGIAMHTWIRQ 208 >gi|296108951|ref|YP_003615900.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus infernus ME] gi|295433765|gb|ADG12936.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus infernus ME] Length = 226 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 I L+ G E GL + + + + +N+S+A AV LY Sbjct: 104 RGNIGLVFGREDDGLYNEELDKCDLLVSIPTSEEYPIMNLSHAVAVILYELY 155 >gi|227877175|ref|ZP_03995249.1| SpoU family RNA methyltransferase [Lactobacillus crispatus JV-V01] gi|256842729|ref|ZP_05548217.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN] gi|256848961|ref|ZP_05554395.1| rRNA methylase [Lactobacillus crispatus MV-1A-US] gi|262045696|ref|ZP_06018660.1| rRNA methylase [Lactobacillus crispatus MV-3A-US] gi|293380174|ref|ZP_06626256.1| putative RNA methyltransferase, TrmH family, group 2 [Lactobacillus crispatus 214-1] gi|295692528|ref|YP_003601138.1| RNA methyltransferase, trmh family, group 2 [Lactobacillus crispatus ST1] gi|312977747|ref|ZP_07789494.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05] gi|227863229|gb|EEJ70674.1| SpoU family RNA methyltransferase [Lactobacillus crispatus JV-V01] gi|256614149|gb|EEU19350.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN] gi|256714500|gb|EEU29487.1| rRNA methylase [Lactobacillus crispatus MV-1A-US] gi|260573655|gb|EEX30211.1| rRNA methylase [Lactobacillus crispatus MV-3A-US] gi|290923218|gb|EFE00139.1| putative RNA methyltransferase, TrmH family, group 2 [Lactobacillus crispatus 214-1] gi|295030634|emb|CBL50113.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus crispatus ST1] gi|310895486|gb|EFQ44553.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05] Length = 186 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ + ++ + + R Sbjct: 1 MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDVRR 60 Query: 192 ISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248 +L L+ + + SS + ++ N + G E GL +E Sbjct: 61 HDDLNAFLKTLGPNDEMYLISKFSSKNYAQVDYTDPNKNYYFVFGKETTGLPETFMREYY 120 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I+ N+SN+ A+ L Sbjct: 121 DRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 151 >gi|300361264|ref|ZP_07057441.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03] gi|300353883|gb|EFJ69754.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03] Length = 185 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ + ++ + + Sbjct: 1 MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDIRM 60 Query: 192 ISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248 +L L+ + + SS + ++ N + G E GL +E Sbjct: 61 HDDLDTFLKTLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGLPETFMREYY 120 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I+ N+SN+ A+ L Sbjct: 121 DRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 151 >gi|309799791|ref|ZP_07694002.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus infantis SK1302] gi|308116585|gb|EFO54050.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus infantis SK1302] Length = 167 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MANHIVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHF 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L D ++KM + ++ + G E KGL + +E Sbjct: 61 YDSLADFMEKMDGQLYLIS-KFAEKVYSDADFTTEGDHYFLFGREDKGLPEEFMREHPEK 119 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151 >gi|86157540|ref|YP_464325.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans 2CP-C] gi|85774051|gb|ABC80888.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans 2CP-C] Length = 269 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++A++ G E +GL E ++ + ++N++ A AV Y Sbjct: 123 QGEVAVVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLAQAVAVISYEV 173 >gi|302914804|ref|XP_003051213.1| hypothetical protein NECHADRAFT_41813 [Nectria haematococca mpVI 77-13-4] gi|256732151|gb|EEU45500.1| hypothetical protein NECHADRAFT_41813 [Nectria haematococca mpVI 77-13-4] Length = 710 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 3/51 (5%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLH---MPGIIKALNVSNAAAVALY 274 L+LG EG GL + A + I +LNVS AA + + Sbjct: 552 HPCLLVLGNEGHGLSKPLKVAADYELSVPRFVQGSCIDSLNVSVAAGLLCH 602 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 9/82 (10%) Query: 41 RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD------ANLPHPFPVK 94 ++T+ YG V AAL RK++ L R + D P+ Sbjct: 304 KYTTAASQFL-YGRSVVKAALEQGRRKLYNLYIYGGENRRDNKDNTFLSRLAEKQGVPIT 362 Query: 95 TVPPQT--IDKIVGKEAVHQGL 114 VP + + + H G Sbjct: 363 IVPTEEQRLMDKMSMGRPHNGF 384 >gi|24380081|ref|NP_722036.1| putative rRNA methylase [Streptococcus mutans UA159] gi|24378075|gb|AAN59342.1|AE014999_10 putative rRNA methylase [Streptococcus mutans UA159] Length = 182 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + +L Sbjct: 20 VVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDSL 79 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 D + ++ + + ++ + G E KGL + ++ + + Sbjct: 80 NDFMNICSGKLHLITKFANKTYSDENYDD-SEHHYFLFGREDKGLPEEFMRQHSEKALRI 138 Query: 255 HMPGI-IKALNVSNAAAVALYITQNH 279 M +++LN+SN + +Y Sbjct: 139 PMNDQHVRSLNLSNTVCMIVYEALRQ 164 >gi|323466957|gb|ADX70644.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus helveticus H10] Length = 186 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ + ++ + + R Sbjct: 1 MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDVRR 60 Query: 192 ISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248 +L L+ + + SS + ++ N + G E GL +E Sbjct: 61 HDDLNAFLKTLGPNDEMYLISKFSSKNYVDVDYTDPNKNYYFVFGKETTGLPETFMREYY 120 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I+ N+SN+ A+ L Sbjct: 121 DRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 151 >gi|254369775|ref|ZP_04985785.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] gi|157122734|gb|EDO66863.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] Length = 365 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 17/34 (50%) Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +A L M G + +LNVS A +ALY T Sbjct: 329 CDFLAKLPMLGEVFSLNVSVATGIALYETVRQRT 362 >gi|322433937|ref|YP_004216149.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9] gi|321161664|gb|ADW67369.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9] Length = 262 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPG-IIK---ALNVSNAAAVALYITQ 277 KIAL+ G+E GL + ++ + M ++N+ AAAV LY Sbjct: 123 KIALLFGSEKTGLSNEELSHCHALLTIPMNTLTADHHLSMNLGQAAAVCLYQLA 176 >gi|327405077|ref|YP_004345915.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823] gi|327320585|gb|AEA45077.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823] Length = 158 Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 3/105 (2%) Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + IPY L D + T ++ + L + + Sbjct: 45 YKKQTSDVTRTWARIPYFHYDTLEDLCNNIPYDCCLTAIELTEGAEFLHDFEHPKRAIYL 104 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 LG+E +GL E + L +LNV+ ++ L+ Sbjct: 105 LGSEDQGLPDSVLEKCRKVIKLPGN---SSLNVAVTGSIVLHDRA 146 >gi|90406922|ref|ZP_01215113.1| putative RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3] gi|90311964|gb|EAS40058.1| putative RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3] Length = 248 Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 17/50 (34%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + +LN++ A Y + Sbjct: 108 PVAIVFGRENSGLTNDELHKCHFHVFIPANPEYSSLNLAMAVQTLSYEIR 157 >gi|328875258|gb|EGG23623.1| TAR RNA loop binding protein [Dictyostelium fasciculatum] Length = 1627 Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 59/182 (32%), Gaps = 4/182 (2%) Query: 96 VPPQTI--DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 V + G + A +D +++V V+ N+ I R+ Sbjct: 1442 VDADDFIESQPTGYQKKILPWADIEEETRHNLMDQRSRQSIIIVATFVDKIPNLAGIART 1501 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRISNLTDALQKMHSWGFQTIG 211 F+ + ++ + R E S S + + K Sbjct: 1502 GEIFNIESLVVSNRRIMKEVMFQQISVSAERWLPIEEVSEENLTDYLMSKKSEGYSLLGI 1561 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + + + +K L+LG E +G+ + + G++++LNV + ++ Sbjct: 1562 EQTSTSNCITEFQFPNKCVLLLGKEKEGIPTEYINLLDKCIEIPQLGVLRSLNVHVSGSI 1621 Query: 272 AL 273 + Sbjct: 1622 MI 1623 >gi|270292116|ref|ZP_06198331.1| RNA methyltransferase, TrmH family [Streptococcus sp. M143] gi|270279644|gb|EFA25486.1| RNA methyltransferase, TrmH family [Streptococcus sp. M143] Length = 180 Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 3/165 (1%) Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L +VL P N G I R+ A + I P + + + Sbjct: 1 MWLFFCNDKRKPIMTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKR 60 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + + + NL D + +M + ++ ++ + G E K Sbjct: 61 AGLDYWDKLEIHFYDNLADFMSQMKEKLYLIS-KFAEKVYSEADLSTDEDHYFLFGREDK 119 Query: 239 GLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 GL +E + M +++LNVSN + +Y Sbjct: 120 GLPEDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 164 >gi|33152694|ref|NP_874047.1| tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP] gi|33148918|gb|AAP96436.1| probable tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP] Length = 242 Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 KIALI G E GL + ++ ++LN++ A +A Y + Sbjct: 108 QHKIALIFGRERIGLTNEELLKCHYHLNVPTNPEYESLNLAMAVQLACYEIR 159 >gi|307717880|ref|YP_003873412.1| RNA methyltransferase, TrmH family [Spirochaeta thermophila DSM 6192] gi|306531605|gb|ADN01139.1| RNA methyltransferase, TrmH family [Spirochaeta thermophila DSM 6192] Length = 265 Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 3/63 (4%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATS---MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + +++G E G+ P+ A S + + G +LNVS AA + L Sbjct: 201 YPFPPEGIVVVGNEELGVSPELLALAESSQGRVSIPLVGTKGSLNVSVAAGILLCYWSRA 260 Query: 280 FAK 282 + Sbjct: 261 LTR 263 >gi|315187484|gb|EFU21240.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM 6578] Length = 265 Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATS---MAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ +++G E G+ P+ A S + + G +LNVS AA + L Sbjct: 201 YTFPEQGIVVVGNEELGVSPELLALAESSQGRVSIPLVGTKGSLNVSVAAGILLCYWSRA 260 Query: 280 FAK 282 + Sbjct: 261 LTR 263 >gi|224010707|ref|XP_002294311.1| ribose methyltransferase [Thalassiosira pseudonana CCMP1335] gi|220970328|gb|EED88666.1| ribose methyltransferase [Thalassiosira pseudonana CCMP1335] Length = 253 Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 73/247 (29%), Gaps = 30/247 (12%) Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L N R F+ A A + + A V V ++ + G HQG L Sbjct: 8 LANNKRT-FRSSAKNEASSEILTLAQKIESLDVVEVDKGVLNTLCG-NRPHQGFVLRCGG 65 Query: 121 LLSPTL-----------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169 L L + + LD V DP N+GA+LRSA I + Sbjct: 66 LEFEPLRGSSSLPSASLAGKDGPLVWLALDEVVDPQNLGALLRSAYFLGGRVGILVCSKN 125 Query: 170 PSESAVLAKSASGA---LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 S +AS + + W + Sbjct: 126 SSPLTTTVSAASAGALEFMTVYSTSNLPKMLNRAREDGWRVLGAAADIPDSGGAARSETG 185 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLH--------------MPGIIKALNVSNAAAVA 272 L+LG+EG+GLR + + + + +LNVS + Sbjct: 186 KPTILVLGSEGRGLRTWVARSCSGFVKVPGGLNMAASDNDEDATQAGVDSLNVSVTGGIL 245 Query: 273 LYITQNH 279 L+ ++ Sbjct: 246 LWHFLSN 252 >gi|116627199|ref|YP_819818.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus LMD-9] gi|116100476|gb|ABJ65622.1| Predicted rRNA methylase (SpoU class) [Streptococcus thermophilus LMD-9] Length = 169 Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 2/146 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + NL Sbjct: 6 IVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDNL 65 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 D + K H+ + +D E + + G E GL +E + Sbjct: 66 ADFMSKNHAGRLHLVTKFADKTYSEEVYADGEDHYFMFGREDTGLPEDFMREHPEKAIRI 125 Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279 M +++LNVSN + +Y Sbjct: 126 PMNDEHVRSLNVSNTVCMIVYEALRQ 151 >gi|296110437|ref|YP_003620818.1| rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154] gi|295831968|gb|ADG39849.1| rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154] Length = 170 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 43/152 (28%), Gaps = 4/152 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + + + ++ EH+ ++ Sbjct: 1 MTNHIVLFEPLMPANTGNIARTTAGTNAVLHLIEPLGFDLDDKHVKRAGLDYWEHVQLVK 60 Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248 + ++ + G E GL ++ Sbjct: 61 HDSLPDFLDTLGEQDHLYLVSKFANMDYTQPNYGETEGDHYFLFGKETTGLPEVFMRQNP 120 Query: 249 TSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279 + I++LN+SN A+ LY Sbjct: 121 EKAIRIPQNDTHIRSLNLSNTVAIVLYEALRQ 152 >gi|261338711|ref|ZP_05966595.1| SpoU rRNA methylase family protein [Bifidobacterium gallicum DSM 20093] gi|270276265|gb|EFA22119.1| SpoU rRNA methylase family protein [Bifidobacterium gallicum DSM 20093] Length = 273 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ ++ GAEG GL K + A + ++ G ++++N AAAV+++ Sbjct: 208 YEFPERCLMLFGAEGPGLSSKALDLADDVVYISQFGSVRSINAGAAAAVSMHAWIAQ 264 >gi|323453231|gb|EGB09103.1| hypothetical protein AURANDRAFT_25148 [Aureococcus anophagefferens] Length = 155 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 21/47 (44%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 L+LG E +G+ + + G++++LNV + A+ Sbjct: 95 LPSPAVLLLGREKEGVPGDLMDLCDVCVEIPQLGVVRSLNVHVSGAL 141 >gi|322517473|ref|ZP_08070346.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] gi|322123955|gb|EFX95514.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] Length = 179 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 2/152 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + S+ +VL P N G I R+ A + I P + + ++ + + Sbjct: 10 QMSRNHIVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDI 69 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248 NL D + K H+ + +D E + + G E GL +E Sbjct: 70 TYYDNLADFMSKNHAGRLHLVTKFADKTYSEEAYADGEDHYFMFGREDTGLPEDFMREHP 129 Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LNVSN + +Y Sbjct: 130 EKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQ 161 >gi|15679837|ref|NP_276955.1| hypothetical protein MTH1849 [Methanothermobacter thermautotrophicus str. Delta H] gi|2622984|gb|AAB86315.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 240 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ G EG GL + + + +N+++AAA+ Y Sbjct: 116 TFILFGREGDGLSNEEIGLCDMVVSVPTSEEYPIMNITHAAAIIFYELFRDR 167 >gi|294495306|ref|YP_003541799.1| RNA methyltransferase, TrmH family, group 1 [Methanohalophilus mahii DSM 5219] gi|292666305|gb|ADE36154.1| RNA methyltransferase, TrmH family, group 1 [Methanohalophilus mahii DSM 5219] Length = 231 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 29/73 (39%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + ++ + N KIA + G E G + + + + +N+ Sbjct: 88 QHIRMPAYTPAEIRDKFRETNGKIAFLFGREDNGFTREELKRCDMIMTIPTSEKYPVMNI 147 Query: 266 SNAAAVALYITQN 278 S+AA +A+Y N Sbjct: 148 SHAATIAMYEMSN 160 >gi|125624162|ref|YP_001032645.1| putative rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|124492970|emb|CAL97933.1| putative rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] Length = 196 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 4/153 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + L N G I R+ A + + L ++ + + + Sbjct: 26 YHMNHIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIV 85 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPK-TQET 247 NL D + + G + + + +DK + G E GL + E Sbjct: 86 YHKNLQDFMNSIADGGQLYLVSKFAEHVYSDVDYSDDKKDHYFLFGREDTGLPEEFMHEH 145 Query: 248 ATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN A + +Y Sbjct: 146 RDECIRIPMNDEHVRSLNLSNCACMIVYEALKQ 178 >gi|300859281|ref|YP_003784264.1| hypothetical protein cpfrc_01864 [Corynebacterium pseudotuberculosis FRC41] gi|300686735|gb|ADK29657.1| hypothetical protein cpfrc_01864 [Corynebacterium pseudotuberculosis FRC41] gi|302206969|gb|ADL11311.1| SpoU rRNA Methylase family protein [Corynebacterium pseudotuberculosis C231] gi|302331529|gb|ADL21723.1| SpoU rRNA Methylase family protein [Corynebacterium pseudotuberculosis 1002] gi|308277220|gb|ADO27119.1| SpoU rRNA Methylase family protein [Corynebacterium pseudotuberculosis I19] Length = 223 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 4/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + +++ + NIG ++R+A AF+ D + R + + L H P Sbjct: 70 RRHALHVAIENFENDANIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLMHHPD 129 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + + +K L+ G EG G+ Q+ A Sbjct: 130 TQSLVDWALSEGLTIVAIDNTPGCIPLET----AELPEKCILLFGQEGPGVTQAAQKGAL 185 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G +++N AA +A++ Sbjct: 186 MTCSIAQFGSTRSINAGVAAGIAMHTWIRQ 215 >gi|297570545|ref|YP_003691889.1| RNA methyltransferase, TrmH family, group 1 [Desulfurivibrio alkaliphilus AHT2] gi|296926460|gb|ADH87270.1| RNA methyltransferase, TrmH family, group 1 [Desulfurivibrio alkaliphilus AHT2] Length = 304 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +++AL+ G E +GL + + + +LN++ A AV Y Sbjct: 120 NRVALLFGPEDRGLTNEDLYLCHQLTTIPTA-DFSSLNLAQAVAVLCYEL 168 >gi|47458956|ref|YP_015818.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K] gi|47458284|gb|AAT27607.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K] Length = 173 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 54/154 (35%), Gaps = 5/154 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK----SASGALEHIP 188 + +VL P N G I+R+ A I + L + +EH Sbjct: 1 MINIVLFQPEIPPNTGNIIRTCKATQAKLHIIKPIAFDLDPKYLKRSAAGWILEDIEHEV 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET- 247 Y + + + G + S ++ ND + ++ G E G+ K + Sbjct: 61 YETYDDFLKKHSEKSIYYLTRYGKINYSDVNFKKYQNNDDLFVMFGTESTGIPKKILKNN 120 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + M +++LN++N + Y Q + Sbjct: 121 LENCLRIPMDKDMRSLNLANTVFLIAYEIQRQWN 154 >gi|288956990|ref|YP_003447331.1| RNA methyltransferase [Azospirillum sp. B510] gi|288909298|dbj|BAI70787.1| RNA methyltransferase [Azospirillum sp. B510] Length = 194 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A +LG E L P E + + M I NV A A+ +Y Sbjct: 91 FRHPSRAAYVLGPERDSLSPALLERCDHVVKIPMSFCI---NVGVAGALVMYDRM 142 >gi|259501039|ref|ZP_05743941.1| RNA methyltransferase [Lactobacillus iners DSM 13335] gi|302190512|ref|ZP_07266766.1| rRNA methyltransferase [Lactobacillus iners AB-1] gi|309804594|ref|ZP_07698659.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LactinV 09V1-c] gi|259167733|gb|EEW52228.1| RNA methyltransferase [Lactobacillus iners DSM 13335] gi|308165986|gb|EFO68204.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LactinV 09V1-c] Length = 170 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 1/59 (1%) Query: 222 QEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G E GL +E + M I+A N++N+ A+ L+ Sbjct: 93 YTDPTKNYYFVFGKETTGLPKTFMREYYERNLRIPMSDHIRAFNLANSVAIVLFEALRQ 151 >gi|227552600|ref|ZP_03982649.1| SpoU family RNA methyltransferase [Enterococcus faecium TX1330] gi|227178226|gb|EEI59198.1| SpoU family RNA methyltransferase [Enterococcus faecium TX1330] Length = 187 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I R+ A + + ++ L ++ + Sbjct: 21 MNHIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYH 80 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251 S+L L + I + E ++ + G E GL +E Sbjct: 81 SDLEAFLTFLGDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPEAFMRENEEKC 140 Query: 252 AHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 141 LRIPMNDEHVRSLNLSNTAAMIVYEALRQ 169 >gi|309803077|ref|ZP_07697176.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LactinV 11V1-d] gi|309806996|ref|ZP_07700978.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LactinV 03V1-b] gi|312872567|ref|ZP_07732635.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LEAF 2062A-h1] gi|312875010|ref|ZP_07735029.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LEAF 2053A-b] gi|315653901|ref|ZP_07906817.1| RNA methyltransferase [Lactobacillus iners ATCC 55195] gi|325913153|ref|ZP_08175523.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners UPII 60-B] gi|308164858|gb|EFO67106.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LactinV 11V1-d] gi|308166616|gb|EFO68813.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LactinV 03V1-b] gi|311089755|gb|EFQ48180.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LEAF 2053A-b] gi|311091929|gb|EFQ50305.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LEAF 2062A-h1] gi|315488597|gb|EFU78243.1| RNA methyltransferase [Lactobacillus iners ATCC 55195] gi|325477574|gb|EGC80716.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners UPII 60-B] Length = 170 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 1/59 (1%) Query: 222 QEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G E GL +E + M I+A N++N+ A+ L+ Sbjct: 93 YTDPTKNYYFVFGKETTGLPKTFMREYYERNLRIPMSDHIRAFNLANSVAIVLFEALRQ 151 >gi|300173493|ref|YP_003772659.1| rRNA methylase [Leuconostoc gasicomitatum LMG 18811] gi|299887872|emb|CBL91840.1| rRNA methylase [Leuconostoc gasicomitatum LMG 18811] Length = 170 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 2/68 (2%) Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMPGI-IKALNVSNAAAV 271 + + G E GL ++ + I++LN+SN A+ Sbjct: 85 NMDYTQPNYMQMQGDQYFLFGKETTGLPEVFMRQNPEKAIRIPQNDTHIRSLNLSNTVAI 144 Query: 272 ALYITQNH 279 L+ Sbjct: 145 VLFEALRQ 152 >gi|311740469|ref|ZP_07714297.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304515|gb|EFQ80590.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 237 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 4/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + +++ + NIG ++R+A AF+ D + R + + L H Sbjct: 84 RRHSLHIAIENFENDANIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLMHHES 143 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + A + + + ++ L+ G EG G+ Q+ A Sbjct: 144 VEKLIAWAAEEGLTVVAIDNTPGCVPLET----AELPERSLLLFGQEGPGVTQAAQDAAV 199 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G +++N AA +A++ Sbjct: 200 MTCSIAQFGSTRSINAGVAAGIAMHAWIRQ 229 >gi|289208012|ref|YP_003460078.1| RNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp. K90mix] gi|288943643|gb|ADC71342.1| RNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp. K90mix] Length = 245 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 20/51 (39%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + + +LN++ + V Y + Sbjct: 110 GPVALVFGREHSGLTNAELDHCNAFVQIPTVPNFSSLNLAGSVQVMTYALR 160 >gi|114327108|ref|YP_744265.1| 23S rRNA methyltransferase [Granulibacter bethesdensis CGDNIH1] gi|114315282|gb|ABI61342.1| 23S rRNA methyltransferase [Granulibacter bethesdensis CGDNIH1] Length = 198 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 3/57 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 A +LG E L P E T + + +LN+S A A+ LY Sbjct: 102 FRHPANAAYVLGPERSSLSPALLERCTHVVRIPTRF---SLNLSVAGALVLYDRLLQ 155 >gi|111226655|ref|XP_641892.2| tRNA/rRNA methyltransferase SpoU family protein [Dictyostelium discoideum AX4] gi|90970700|gb|EAL67904.2| tRNA/rRNA methyltransferase SpoU family protein [Dictyostelium discoideum AX4] Length = 1680 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 53/144 (36%), Gaps = 2/144 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY--SPSESAVLAKSASGALEHIPYIR 191 +++ + + NI ++R+ F+ + + S + ++ SA + I + Sbjct: 1524 IIVCGTLIENTPNIAGLIRTCEIFNVEEVAIPNNKLLSDPQFQRVSVSAEKWVPTIEVTK 1583 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + L K + K L +K L+LG E G+ + Sbjct: 1584 PNLLDYLKLKKKQGYSILGVEQTSQSKRLSSFQFPNKCLLLLGQEQNGIPAEYLSIIDYA 1643 Query: 252 AHLHMPGIIKALNVSNAAAVALYI 275 + G I++LNV + ++ ++ Sbjct: 1644 VEIEQLGQIRSLNVHVSGSIVIWE 1667 >gi|25029159|ref|NP_739213.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314] gi|259505846|ref|ZP_05748748.1| TrmH family RNA methyltransferase [Corynebacterium efficiens YS-314] gi|23494447|dbj|BAC19413.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314] gi|259166520|gb|EEW51074.1| TrmH family RNA methyltransferase [Corynebacterium efficiens YS-314] Length = 230 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 4/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + +++ + NIG ++R+A AF+ D + R + + LEH P Sbjct: 77 RRHPLHVAIENFENDANIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLEHHPD 136 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + S + ++ L+ G EG G+ + + A Sbjct: 137 VHSLLVWALRNDLTVVAIDNTPGSVPLET----AQLPERCLLLFGQEGPGVTDEARAGAL 192 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G +++N AA +A++ Sbjct: 193 MTCSIAQFGSTRSINAGVAAGIAMHTWIRQ 222 >gi|301169082|emb|CBW28679.1| predicted methyltransferase [Haemophilus influenzae 10810] Length = 241 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 KIA++ G E GL + ++ +LN++ A + Y + Sbjct: 102 YKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR 154 >gi|328950108|ref|YP_004367443.1| RNA methyltransferase, TrmH family, group 1 [Marinithermus hydrothermalis DSM 14884] gi|328450432|gb|AEB11333.1| RNA methyltransferase, TrmH family, group 1 [Marinithermus hydrothermalis DSM 14884] Length = 235 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +AL+ G E GL + + + H+ +LN++ A + Y Sbjct: 105 GPVALLFGRENFGLFNEELDRCHYVLHIPTAPDYASLNLAQAVLLVAYELFQ 156 >gi|16272328|ref|NP_438541.1| hypothetical protein HI0380 [Haemophilus influenzae Rd KW20] gi|1573350|gb|AAC22038.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] Length = 241 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 KIA++ G E GL + ++ +LN++ A + Y + Sbjct: 102 YKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR 154 >gi|212224617|ref|YP_002307853.1| Hypothetical tRNA/rRNA methyltransferase [Thermococcus onnurineus NA1] gi|212009574|gb|ACJ16956.1| Hypothetical tRNA/rRNA methyltransferase [Thermococcus onnurineus NA1] Length = 239 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 25/71 (35%) Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + + + +I + G E GL+ + E + I +N+S A AV Sbjct: 89 PMMPWELAEALQGYSGRIGIFFGRESIGLKNEELERMDLTVTIPTSEIYPVMNLSQAVAV 148 Query: 272 ALYITQNHFAK 282 LY K Sbjct: 149 ILYELAKGRRK 159 >gi|56479103|ref|YP_160692.1| RNA methyltransferase [Aromatoleum aromaticum EbN1] gi|56315146|emb|CAI09791.1| RNA methyltransferase [Aromatoleum aromaticum EbN1] Length = 242 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 19/52 (36%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL E + + +LN+ A + Y + Sbjct: 111 KGDVALVFGTEMSGLTNDEVERCSMPVSIPANPAFSSLNLGAAVQLLCYELR 162 >gi|328712534|ref|XP_003244835.1| PREDICTED: hypothetical protein LOC100569722 [Acyrthosiphon pisum] Length = 140 Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 4/67 (5%) Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPK----TQETATSMAHLHMPGIIKALNVSNAAAVA 272 K + LI+G E GL + + ++ + I++LN + A + Sbjct: 56 PYYEIDYCKITPLILIIGGETHGLSDEGYEFARSRKGIRLNIPLENGIESLNSATAVGIL 115 Query: 273 LYITQNH 279 + + Sbjct: 116 CFEAKKQ 122 >gi|330446686|ref|ZP_08310338.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490877|dbj|GAA04835.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 246 Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A++ G E GL + + ++ +LN++ A Y + Sbjct: 106 HHNVAILFGRERTGLTNEELQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVR 157 >gi|261209252|ref|ZP_05923644.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6] gi|289566001|ref|ZP_06446439.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium D344SRF] gi|260076798|gb|EEW64533.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6] gi|289162199|gb|EFD10061.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium D344SRF] Length = 168 Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 52/150 (34%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + + ++ L ++ + Sbjct: 1 MMNHIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 SNL L + + I + E ++ + G E GL +E Sbjct: 61 HSNLEAFLTFLGNRKLHLISKFAHKVYSDENFADGEEHFFLFGKETTGLPETFMRENEEK 120 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y + Sbjct: 121 CLRIPMNDEHVRSLNLSNTAAMIVYESLRQ 150 >gi|145634624|ref|ZP_01790333.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittAA] gi|145268169|gb|EDK08164.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittAA] Length = 241 Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 KIA++ G E GL + ++ +LN++ A + Y + Sbjct: 102 YKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR 154 >gi|309810015|ref|ZP_07703862.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners SPIN 2503V10-D] gi|312870678|ref|ZP_07730786.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LEAF 3008A-a] gi|312874347|ref|ZP_07734378.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LEAF 2052A-d] gi|325911440|ref|ZP_08173852.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners UPII 143-D] gi|329920512|ref|ZP_08277244.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners SPIN 1401G] gi|308169655|gb|EFO71701.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners SPIN 2503V10-D] gi|311090113|gb|EFQ48526.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LEAF 2052A-d] gi|311093789|gb|EFQ52125.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LEAF 3008A-a] gi|325476790|gb|EGC79944.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners UPII 143-D] gi|328936188|gb|EGG32641.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners SPIN 1401G] Length = 170 Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 1/59 (1%) Query: 222 QEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G E GL +E + M I+A N++N+ A+ L+ Sbjct: 93 YTDPTKNYYFVFGKETTGLPKTFMREYYERNLRIPMSDHIRAFNLANSVAIVLFEALRQ 151 >gi|212534794|ref|XP_002147553.1| RNA methyltransferase, TrmH family [Penicillium marneffei ATCC 18224] gi|210069952|gb|EEA24042.1| RNA methyltransferase, TrmH family [Penicillium marneffei ATCC 18224] Length = 506 Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 11/59 (18%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPG-----------IIKALNVSNAAAVAL 273 L+LG EG GL P+ + A + + +LNVS AAA+ + Sbjct: 412 TAPTVLMLGNEGTGLLPRIKAQADGFVSIPGARIRPDMGINDAARVDSLNVSVAAALLM 470 Score = 42.1 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 8/86 (9%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD------ANLPHPFPVK--TVPPQ 99 + F+YG+ V AAL RK++ L + A L + L VK Sbjct: 160 SEFIYGLSAVEAALRCTRRKLYMLYIYQAAGEELSPERIALRKLALARGIHVKMAFAGWD 219 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT 125 I + H GL LE +P+ Sbjct: 220 RIMDKMSTGRPHNGLILEASPMPQVP 245 >gi|145638711|ref|ZP_01794320.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittII] gi|145272306|gb|EDK12214.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittII] gi|309750201|gb|ADO80185.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Haemophilus influenzae R2866] Length = 241 Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 KIA++ G E GL + ++ +LN++ A + Y + Sbjct: 102 YKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR 154 >gi|198282955|ref|YP_002219276.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666933|ref|YP_002425158.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247476|gb|ACH83069.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519146|gb|ACK79732.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus ferrooxidans ATCC 23270] Length = 256 Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 18/51 (35%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 AL+ G E GL + + H+ +LN+ A V Y Sbjct: 110 TGDCALLFGRERTGLTNAEMDRCQVLVHIPTADEYHSLNLGQAVQVLAYEL 160 >gi|329667696|gb|AEB93644.1| rRNA methylase [Lactobacillus johnsonii DPC 6026] Length = 185 Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 46/151 (30%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ + ++ + + Sbjct: 1 MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDIRM 60 Query: 192 ISN--LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248 + + + SS + ++ N + G E GL +E Sbjct: 61 HDDLETFLNTLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGLPETFMREYY 120 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I+ N+SN+ A+ L Sbjct: 121 DRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 151 >gi|302786858|ref|XP_002975200.1| hypothetical protein SELMODRAFT_415294 [Selaginella moellendorffii] gi|300157359|gb|EFJ23985.1| hypothetical protein SELMODRAFT_415294 [Selaginella moellendorffii] Length = 338 Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 6/60 (10%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL------YITQNHFAK 282 IAL+ G E GL + T + +LNVS+A A+AL Y K Sbjct: 128 IALVFGREDDGLTNEELLYCTHTCRIPTTKWEGSLNVSHAVALALSKMFSSYERLRRVHK 187 >gi|148827519|ref|YP_001292272.1| hypothetical protein CGSHiGG_04710 [Haemophilus influenzae PittGG] gi|260580557|ref|ZP_05848385.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|260582528|ref|ZP_05850318.1| tRNA/rRNA methyltransferase [Haemophilus influenzae NT127] gi|319775753|ref|YP_004138241.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae F3047] gi|319896709|ref|YP_004134902.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031] gi|329123594|ref|ZP_08252154.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus aegyptius ATCC 11116] gi|20178339|sp|P44676|Y380_HAEIN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase HI_0380 gi|5853047|gb|AAD54289.1| HI0380 [Haemophilus influenzae] gi|148718761|gb|ABQ99888.1| hypothetical protein CGSHiGG_04710 [Haemophilus influenzae PittGG] gi|260092899|gb|EEW76834.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|260094339|gb|EEW78237.1| tRNA/rRNA methyltransferase [Haemophilus influenzae NT127] gi|317432211|emb|CBY80563.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae F3031] gi|317450344|emb|CBY86560.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae F3047] gi|327469793|gb|EGF15258.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus aegyptius ATCC 11116] Length = 241 Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 KIA++ G E GL + ++ +LN++ A + Y + Sbjct: 102 YKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR 154 >gi|116629974|ref|YP_815146.1| rRNA methylase (SpoU class) [Lactobacillus gasseri ATCC 33323] gi|116095556|gb|ABJ60708.1| Predicted rRNA methylase (SpoU class) [Lactobacillus gasseri ATCC 33323] Length = 209 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 3/152 (1%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 +VL P N G I R+ + + ++ + ++ + + Sbjct: 24 FMTNHVVLYEPLMPANTGNIARTCAGTNTILDLIEPLGFQIDNKKMKRAGLDYWDKVDIR 83 Query: 191 RISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQET 247 +L L+ + + SS + ++ N + G E GL +E Sbjct: 84 MHDDLDAFLKTLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGLPETFMREY 143 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I+ N+SN+ A+ L Sbjct: 144 YDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 175 >gi|269213493|ref|ZP_05982089.2| RNA methyltransferase, TrmH family, group 1 [Neisseria cinerea ATCC 14685] gi|269146253|gb|EEZ72671.1| RNA methyltransferase, TrmH family, group 1 [Neisseria cinerea ATCC 14685] Length = 330 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+ L+ G E GL + + + ++ +LN++ A V Y + Sbjct: 197 EKVTLVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 249 >gi|313126187|ref|YP_004036457.1| RNA methyltransferase, trmh family, group 1 [Halogeometricum borinquense DSM 11551] gi|312292552|gb|ADQ67012.1| RNA methyltransferase, TrmH family, group 1 [Halogeometricum borinquense DSM 11551] Length = 249 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 21/50 (42%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K AL+ G EG+GL + + LN+ AA + +Y + Sbjct: 113 KTALVFGREGRGLNNDELARLDEICSIPASDDYPVLNLGQAATILMYELR 162 >gi|15902476|ref|NP_358026.1| rRNA methylase [Streptococcus pneumoniae R6] gi|15457998|gb|AAK99236.1| rRNA methylase [Streptococcus pneumoniae R6] Length = 180 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 3/165 (1%) Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L + +VL P N G I R+ A + I P + + + Sbjct: 1 MWLFFCNGKRKQVMTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKR 60 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + + + +L D + +M + ++ N+ + G E K Sbjct: 61 AGLDYWDKLEIYFYESLEDFMSQMKGKLYLIS-KFAEKVYSDVDLSTNEDHYFLFGREDK 119 Query: 239 GLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 GL +E + M +++LNVSN + +Y Sbjct: 120 GLPEDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 164 >gi|134046367|ref|YP_001097852.1| RNA methyltransferase [Methanococcus maripaludis C5] gi|132663992|gb|ABO35638.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus maripaludis C5] Length = 254 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N ++ ++ G E GL+ + E + + +N+S+A +V LY Sbjct: 121 HVELNGRLGIVFGREDDGLKNEYVELCDILVSVPTSNNYPIMNLSHAVSVLLYEIY 176 >gi|303284060|ref|XP_003061321.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457672|gb|EEH54971.1| predicted protein [Micromonas pusilla CCMP1545] Length = 150 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 49/149 (32%), Gaps = 4/149 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + E + L ++ + + Sbjct: 1 VVLVSPQIPGNTGTIARTCAASRVPLHLVGPLGFTLEDSQLKRAGLDYCVCVRVHDDWDA 60 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS---MA 252 A + + ++ E+ L+ GAE GL + + + Sbjct: 61 FYAYWSVDLGAPGRLVAKFGARPHAEEGAYLPGDWLLFGAETTGLPDEAHDACARSGGIR 120 Query: 253 HLHMPGI-IKALNVSNAAAVALYITQNHF 280 + + +++LN++ +A V +Y Sbjct: 121 RIPIDEDHVRSLNLAVSAGVGVYEAIRQI 149 >gi|238853588|ref|ZP_04643958.1| CspR [Lactobacillus gasseri 202-4] gi|311110393|ref|ZP_07711790.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri MV-22] gi|313471788|sp|Q042B4|TRML_LACGA RecName: Full=Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase LGAS_1346 gi|238833806|gb|EEQ26073.1| CspR [Lactobacillus gasseri 202-4] gi|311065547|gb|EFQ45887.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri MV-22] Length = 185 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ + ++ + + Sbjct: 1 MTNHVVLYEPLMPANTGNIARTCAGTNTILDLIEPLGFQIDNKKMKRAGLDYWDKVDIRM 60 Query: 192 ISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248 +L L+ + + SS + ++ N + G E GL +E Sbjct: 61 HDDLDAFLKTLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGLPETFMREYY 120 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I+ N+SN+ A+ L Sbjct: 121 DRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 151 >gi|315611850|ref|ZP_07886769.1| TrmH family RNA methyltransferase [Streptococcus sanguinis ATCC 49296] gi|315316028|gb|EFU64061.1| TrmH family RNA methyltransferase [Streptococcus sanguinis ATCC 49296] Length = 167 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHF 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 NL D + +M + ++ ++ + G E KGL +E + Sbjct: 61 YDNLADFMSQMKGQVYLIS-KFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPET 119 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151 >gi|209694304|ref|YP_002262232.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida LFI1238] gi|208008255|emb|CAQ78400.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida LFI1238] Length = 242 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 19/52 (36%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + IA + G E GL + + + +LN++ A Y + Sbjct: 106 SHPIAFVFGRERVGLTNEELQKCHFHVCIPANPEYSSLNLAMAVQTISYEAR 157 >gi|149190103|ref|ZP_01868380.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1] gi|148836133|gb|EDL53093.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1] Length = 217 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 24/70 (34%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + E + +AL+ G E GL + + + +LN++ Sbjct: 62 WPMIEPRECGEKFAIEGEQHPVALVFGRERTGLTNEELQLCHFHTCIPANPEYSSLNLAM 121 Query: 268 AAAVALYITQ 277 A Y + Sbjct: 122 AVQTLSYEVR 131 >gi|332970351|gb|EGK09343.1| RNA methyltransferase [Kingella kingae ATCC 23330] Length = 265 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 19/52 (36%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 L+ G E GL + + + +LN++ A V Y + + Sbjct: 138 LVFGNETFGLSIDEVQHCNRLMTISGNPNYFSLNLAQAVQVVCYELFSQVNQ 189 >gi|301096946|ref|XP_002897569.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262107029|gb|EEY65081.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 719 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 23/51 (45%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L LG E +G+ + + + G++++LNV + + L+ Sbjct: 658 MVLALGREKEGIPVEVLQLVDVCVEIPQFGLVRSLNVHVSGPLVLWEYTQQ 708 >gi|255325551|ref|ZP_05366651.1| spou rrna methylase family protein [Corynebacterium tuberculostearicum SK141] gi|255297339|gb|EET76656.1| spou rrna methylase family protein [Corynebacterium tuberculostearicum SK141] Length = 232 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 4/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + +++ + NIG ++R+A AF+ D + R + + L H Sbjct: 79 RRHSLHIAIENFENDANIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLMHHES 138 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + A + + + ++ L+ G EG G+ Q+ A Sbjct: 139 VEKLIAWAAEEGLTVVAIDNTPGCVPLET----AELPERSLLLFGQEGPGVTQAAQDAAV 194 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G +++N AA +A++ Sbjct: 195 MTCSIAQFGSTRSINAGVAAGIAMHAWIRQ 224 >gi|172061034|ref|YP_001808686.1| RNA methyltransferase [Burkholderia ambifaria MC40-6] gi|171993551|gb|ACB64470.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria MC40-6] Length = 273 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 133 GDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELR 183 >gi|85373106|ref|YP_457168.1| putative RNA methylase [Erythrobacter litoralis HTCC2594] gi|84786189|gb|ABC62371.1| putative RNA methylase [Erythrobacter litoralis HTCC2594] Length = 152 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 3/152 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL H P N GA+ R+ VA + ++ + + +S HI + Sbjct: 1 MTAIVLVHPEIPGNTGAVGRTCVALDMELVLIHPLGFAIDDKRVKRSGLDYWPHIRLVEC 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251 ++ L + Q + + + L+ G E KGL M Sbjct: 61 ASWDAFLAERAPRADQLFLFEEYAPRSFYEPDYPKDAYLVFGRETKGLPQGIVAAHRAQM 120 Query: 252 AHLHMPG-IIKALNVSNAAAVALYITQN-HFA 281 L M +++LN++N A A Y + Sbjct: 121 VSLPMRSDKVRSLNLANTVAAAAYQAMRGQLS 152 >gi|115352170|ref|YP_774009.1| RNA methyltransferase [Burkholderia ambifaria AMMD] gi|115282158|gb|ABI87675.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria AMMD] Length = 273 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 133 GDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELR 183 >gi|134296089|ref|YP_001119824.1| RNA methyltransferase [Burkholderia vietnamiensis G4] gi|134139246|gb|ABO54989.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia vietnamiensis G4] Length = 276 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IAL+ G E GL + E +++AH+ +LN++ A V Y + Sbjct: 133 GDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELR 183 >gi|325981240|ref|YP_004293642.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas sp. AL212] gi|325530759|gb|ADZ25480.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas sp. AL212] Length = 241 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + H+ +LN+++A V Y + Sbjct: 111 QHPVALLFGTETSGLTTAEVSKCQMIIHIPANPEFTSLNLASAVQVMTYELR 162 >gi|123968694|ref|YP_001009552.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. AS9601] gi|123198804|gb|ABM70445.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. AS9601] Length = 250 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 25/66 (37%) Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K + +A+I G E +GL A + +LN+S+A ++ LY Sbjct: 104 FDWTLSFNKLNNLAIIFGREDRGLTNSELLLANKTFSIPTSQNNPSLNLSHAVSIVLYEL 163 Query: 277 QNHFAK 282 K Sbjct: 164 NKSSKK 169 >gi|288957122|ref|YP_003447463.1| RNA methyltransferase [Azospirillum sp. B510] gi|288909430|dbj|BAI70919.1| RNA methyltransferase [Azospirillum sp. B510] Length = 279 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 90/237 (37%), Gaps = 13/237 (5%) Query: 44 SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPFPVKTVPPQTI 101 + + G+ VSA + ++ +L + + A P + V + Sbjct: 31 ESRKLFRVAGLAAVSALFTHEPERVERLFFDERLKPAVGAFCKAMAAARKPYRMVEADEL 90 Query: 102 DKIVGKEAVHQGLALETAP--LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 K+ G +AL L T A R ++ L++LD V +PHN+GAILR+A F Sbjct: 91 AKVAGTVLHGGVVALMAPRTLPLFDTEAARRAAEPLLILDGVGNPHNLGAILRTAAFFGL 150 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 ++ + + + A + + + A+ K + G + D +P Sbjct: 151 PRVLVSDHPGQALPSEAAYRVAEGGFEWVALERAPALPAVLKRLRASHRLFGTALDQSRP 210 Query: 220 ---------LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + A++LG E G+ P T ++ + G +++LNV+ Sbjct: 211 AVDAGALTGWRGKADTKPPAVVLGNEEDGIPPATLAACEAVLTIPGSGHVQSLNVAA 267 >gi|314937991|ref|ZP_07845302.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0133a04] gi|314941583|ref|ZP_07848467.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0133C] gi|314948431|ref|ZP_07851819.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0082] gi|314951380|ref|ZP_07854432.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0133A] gi|314991309|ref|ZP_07856788.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0133B] gi|314995352|ref|ZP_07860458.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0133a01] gi|313590445|gb|EFR69290.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0133a01] gi|313594082|gb|EFR72927.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0133B] gi|313596438|gb|EFR75283.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0133A] gi|313599603|gb|EFR78446.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0133C] gi|313642666|gb|EFS07246.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0133a04] gi|313645156|gb|EFS09736.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0082] Length = 187 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 2/149 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +VL P N G I R+ A + + ++ L ++ + Sbjct: 21 MNHIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYH 80 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251 SNL L + + I + E ++ + G E GL +E Sbjct: 81 SNLEAFLTFLGNRKLHLISKFAHKVYSDENFADGEEHFFLFGKETTGLPETFMRENEEKC 140 Query: 252 AHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN AA+ +Y Sbjct: 141 LRIPMNDEHVRSLNLSNTAAMIVYEALRQ 169 >gi|257457024|ref|ZP_05622205.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580] gi|257445733|gb|EEV20795.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580] Length = 295 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/241 (14%), Positives = 73/241 (30%), Gaps = 16/241 (6%) Query: 47 ENLFLYGV--H---------TVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95 ++ ++ G+ H ++AA+ + R R+ ++ + Sbjct: 47 DSFYIEGLCTHLASIYPADTAITAAVES-YRVALHAGVLTAGDYRVLFNTLRHALYRQSG 105 Query: 96 VPPQTIDKIVGKEAVHQGLALE--TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 V P D I + G TAP + + + +I A Sbjct: 106 VQPSEWDLIAPGQRYGTGTPKHDTTAPNPNTAIPTPDAAVRPFYPGVYVYAEDIRAPFNL 165 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 F ++ SE V + A + + Sbjct: 166 GSIFRTAEAFGAEKLLLSEGCVSPEQ-PRAQRSAMGCTRFLPWEYCPLGSMPAGLPVFAL 224 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHLHMPGIIKALNVSNAAAVA 272 P+ + ++LG+E GL + + A++ + + M GI +LNV+ A + Sbjct: 225 ETGGTPITSFPFPKQGIVLLGSEELGLSAEALKRASAGIVSIPMKGIKASLNVAVAFGIL 284 Query: 273 L 273 + Sbjct: 285 M 285 >gi|240172151|ref|ZP_04750810.1| spou rRNA methylase family protein [Mycobacterium kansasii ATCC 12478] Length = 218 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + L+ G EG G+ + A+ + G +++N AA +A++ Sbjct: 156 LPRECLLLFGQEGPGITADARAGASVTLSIAQFGSTRSINAGVAAGIAMHAWIRQ 210 >gi|302791677|ref|XP_002977605.1| hypothetical protein SELMODRAFT_443580 [Selaginella moellendorffii] gi|300154975|gb|EFJ21609.1| hypothetical protein SELMODRAFT_443580 [Selaginella moellendorffii] Length = 338 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 6/60 (10%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL------YITQNHFAK 282 IAL+ G E GL + T + +LNVS+A A+AL Y K Sbjct: 128 IALVFGREDDGLTNEELLYCTHTCRIPTTKWEGSLNVSHAVALALSKMFSSYERLRRVHK 187 >gi|68248983|ref|YP_248095.1| tRNA/rRNA methyltransferase [Haemophilus influenzae 86-028NP] gi|145631835|ref|ZP_01787594.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae R3021] gi|145632627|ref|ZP_01788361.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 3655] gi|229844532|ref|ZP_04464672.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 6P18H1] gi|229846467|ref|ZP_04466575.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 7P49H1] gi|68057182|gb|AAX87435.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 86-028NP] gi|144982554|gb|EDJ90108.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae R3021] gi|144986822|gb|EDJ93374.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 3655] gi|229810560|gb|EEP46278.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 7P49H1] gi|229812781|gb|EEP48470.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 6P18H1] gi|309972461|gb|ADO95662.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Haemophilus influenzae R2846] Length = 241 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 KIA++ G E GL + ++ +LN++ A + Y + Sbjct: 102 YKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR 154 >gi|149197508|ref|ZP_01874559.1| hypothetical protein LNTAR_00965 [Lentisphaera araneosa HTCC2155] gi|149139526|gb|EDM27928.1| hypothetical protein LNTAR_00965 [Lentisphaera araneosa HTCC2155] Length = 162 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 49/152 (32%), Gaps = 7/152 (4%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + + + + + NIG + RSA I T + + + Sbjct: 5 SHKYKNQGFFGIGIMNNVNGLNIGTLWRSAYIMGASYIFTIDKKYKKQM----SDVTHTW 60 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + IP N D + ++ + D+ +LG E GL PK Sbjct: 61 KKIPLYHYKNFDDFYDNQPTATRIIAVELTEDAIDIADYEHPDQACYLLGNEQAGLAPKV 120 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + L +LNV+ A ++ +Y Sbjct: 121 LKRCHGIVKLPGYF---SLNVAVAGSILMYDR 149 >gi|75761064|ref|ZP_00741063.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491448|gb|EAO54665.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 202 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 8/113 (7%) Query: 16 KDSHYAKL--RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 ++ H K + K+ + K + + F+ G H V AL + +L+ Sbjct: 7 RELHIMKNIDSVQNPRVKQWKKLQTK-KERDKKGLFFVEGFHLVEEALKAG--IVTELIV 63 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 + DW N + VP + + E A+ L Sbjct: 64 SDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKHEKEVAL 113 >gi|304385180|ref|ZP_07367526.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284] gi|304329374|gb|EFL96594.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284] Length = 172 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 231 LILGAEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279 + G E GL ++ A + I+ALN+SN+ A+ +Y Sbjct: 104 FLFGKETTGLPEAFMRQYADCAIRIPQNDQHIRALNLSNSVAIVIYEVLRQ 154 >gi|116617771|ref|YP_818142.1| rRNA methylase (SpoU class) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096618|gb|ABJ61769.1| Predicted rRNA methylase (SpoU class) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 170 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 49/152 (32%), Gaps = 4/152 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + + ++ +H+ ++ Sbjct: 1 MTNHIVLFEPLMPANTGNIARTTAGTDAVLHLIEPLGFELDDKHVKRAGLDYWDHVKLVK 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--ALILGAEGKGLRP-KTQETA 248 +L D L + + ++ + + + G E GL ++ Sbjct: 61 HPSLPDFLDTLAETDNLYLVSKFANQDYTQPNYAQNDTDNYFLFGKETTGLPEVFMRQNP 120 Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + +++LN+SN A+ LY Sbjct: 121 EKAIRIPQDDSHVRSLNLSNTVAIVLYEALRQ 152 >gi|225024719|ref|ZP_03713911.1| hypothetical protein EIKCOROL_01605 [Eikenella corrodens ATCC 23834] gi|224942514|gb|EEG23723.1| hypothetical protein EIKCOROL_01605 [Eikenella corrodens ATCC 23834] Length = 268 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 20/51 (39%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +AL+ G E GL + + + +LN++ A V Y + Sbjct: 139 VALVFGNETFGLNIDEVQRCNRLLTISGNPAYFSLNLAQAVQVVCYEIFSQ 189 >gi|182683437|ref|YP_001835184.1| RNA methyltransferase [Streptococcus pneumoniae CGSP14] gi|182628771|gb|ACB89719.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae CGSP14] Length = 180 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 3/165 (1%) Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L + + +VL P N G I R+ A + I P + + + Sbjct: 1 MWLFFCNGERKQVMTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKR 60 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + + + +L D + +M + ++ ++ + G E K Sbjct: 61 AGLDYWDKLEIYFYESLEDFISQMKGKLYLIS-KFAEKVYSEVDLSTDEDHYFLFGREDK 119 Query: 239 GLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 GL +E + M +++LNVSN + +Y Sbjct: 120 GLPEDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 164 >gi|33865253|ref|NP_896812.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102] gi|33632422|emb|CAE07234.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102] Length = 238 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 8/156 (5%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +++VL P NIG++ R F D + + A A + Sbjct: 1 MTVVVVLVEPAGPLNIGSVARLCANFGVDALRLVNPRCEVLCDDALRMAVHATPLLRQAT 60 Query: 192 ISN--------LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 I + + I L + + AL+ G E +GL Sbjct: 61 IHPDLEAAIGDCSRVIATCGRLDHGGIPLQTPDTAINWLLAGDPPHALVFGREDRGLTND 120 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + LH +LN+S+A AV L+ H Sbjct: 121 ELRLCQRVLTLHSQAAYPSLNLSHAVAVVLHDLARH 156 >gi|88808981|ref|ZP_01124490.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 7805] gi|88786923|gb|EAR18081.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 7805] Length = 244 Score = 62.5 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 25/50 (50%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +AL+ G E +GL + + + L +LN+S+A AV L+ Q Sbjct: 109 VALVFGREDRGLSNEELLLSQRVVRLQTDDQYPSLNLSHAVAVVLHDLQR 158 >gi|328541799|ref|YP_004301908.1| TRNA/rRNA methyltransferase (SpoU) [polymorphum gilvum SL003B-26A1] gi|326411551|gb|ADZ68614.1| TRNA/rRNA methyltransferase (SpoU) [Polymorphum gilvum SL003B-26A1] Length = 181 Score = 62.5 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 3/60 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + A +LG E L P + + I NV+ A A+ LY + Sbjct: 91 FMHPLRAAYVLGPERGSLSPAMLARCDHVVKIPTRFCI---NVATAGAIVLYDRHRALGR 147 >gi|42518756|ref|NP_964686.1| hypothetical protein LJ0831 [Lactobacillus johnsonii NCC 533] gi|227889595|ref|ZP_04007400.1| SpoU family RNA methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|268319843|ref|YP_003293499.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785] gi|41583042|gb|AAS08652.1| hypothetical protein LJ_0831 [Lactobacillus johnsonii NCC 533] gi|227849843|gb|EEJ59929.1| SpoU family RNA methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|262398218|emb|CAX67232.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785] Length = 185 Score = 62.5 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 46/151 (30%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ + ++ + + Sbjct: 1 MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDIRM 60 Query: 192 ISN--LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248 + + + SS + ++ N + G E GL +E Sbjct: 61 HDDLEAFLNTLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGLPETFMREYY 120 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I+ N+SN+ A+ L Sbjct: 121 DRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 151 >gi|257097728|pdb|3ILK|A Chain A, The Structure Of A Probable Methylase Family Protein From Haemophilus Influenzae Rd Kw20 gi|257097729|pdb|3ILK|B Chain B, The Structure Of A Probable Methylase Family Protein From Haemophilus Influenzae Rd Kw20 Length = 244 Score = 62.5 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 KIA++ G E GL + ++ +LN++ A + Y + Sbjct: 105 YKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAXAVQLVSYELR 157 >gi|145636352|ref|ZP_01792021.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittHH] gi|145270517|gb|EDK10451.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittHH] Length = 241 Score = 62.5 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 KIA++ G E GL + ++ +LN++ A + Y + Sbjct: 102 YKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR 154 >gi|170016981|ref|YP_001727900.1| rRNA methylase (SpoU class) [Leuconostoc citreum KM20] gi|169803838|gb|ACA82456.1| Predicted rRNA methylase (SpoU class) [Leuconostoc citreum KM20] Length = 170 Score = 62.5 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 2/68 (2%) Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMPGI-IKALNVSNAAAV 271 + + + G E GL ++ + I++LN+SN A+ Sbjct: 85 NMDYTQPDYAESQGDHYFLFGKETTGLPEVFMRQNPEKAIRIPQDDTHIRSLNLSNTVAI 144 Query: 272 ALYITQNH 279 LY Sbjct: 145 VLYEALRQ 152 >gi|46199124|ref|YP_004791.1| putative RNA methyltransferase [Thermus thermophilus HB27] gi|55981151|ref|YP_144448.1| hypothetical protein TTHA1182 [Thermus thermophilus HB8] gi|46196748|gb|AAS81164.1| putative RNA methyltransferase [Thermus thermophilus HB27] gi|55772564|dbj|BAD71005.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 244 Score = 62.5 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 25/67 (37%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + ++AL+ G E GL + E A + ++ +LN++ A V Y Sbjct: 98 WEVADRVAAFPGEVALVFGRETFGLTNEELELAHLIGYIPTAPEQPSLNLAQAVVVFAYE 157 Query: 276 TQNHFAK 282 K Sbjct: 158 LFKRQGK 164 >gi|227432354|ref|ZP_03914346.1| SpoU family RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351875|gb|EEJ42109.1| SpoU family RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 170 Score = 62.5 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 4/152 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + + ++ +H+ ++ Sbjct: 1 MTNHIVLFEPLMPANTGNIARTTAGTDAVLHLIEPLGFELDDKHVKRAGLDYWDHVKLVK 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--ALILGAEGKGLRP-KTQETA 248 L D L + + ++ + + + G E GL ++ Sbjct: 61 HPGLPDFLDTLAETDNLYLVSKFANQDYTQPNYAQNDTDNYFLFGKETTGLPEVFMRQNP 120 Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + +++LN+SN A+ LY Sbjct: 121 EKAIRIPQDDSHVRSLNLSNTVAIVLYEALRQ 152 >gi|149369726|ref|ZP_01889578.1| tRNA/rRNA methyltransferase [unidentified eubacterium SCB49] gi|149357153|gb|EDM45708.1| tRNA/rRNA methyltransferase [unidentified eubacterium SCB49] Length = 179 Score = 62.5 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 62/154 (40%), Gaps = 5/154 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L+++LD++ +NIG++ R+A AF + I + + K+A GA E + + + Sbjct: 26 PLIIILDNIRSLNNIGSVFRTADAFLIEKIYLCGITATPPHKDIQKTALGATESVAWEHV 85 Query: 193 SNLTDAL---QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 N D + + + K+ A++ G E KG++ + Sbjct: 86 ENTEDLIVSLKNEGVTICAIEQAEQSVSLEKYEVSKDKTYAVVFGNEVKGVQQTVVTESD 145 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN--HFA 281 + + G +LN+S + V ++ + Sbjct: 146 VVIEIPQYGTKHSLNISVSTGVVVWDFFKKMQLS 179 >gi|119713222|gb|ABL97289.1| RNA methyltransferase [uncultured marine bacterium HF10_05C07] Length = 243 Score = 62.5 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K K ++ G E GL + + + +LN+S+A + + + Sbjct: 111 KTTKTGIVFGREDNGLSNEELQKCHYHLIIPASEEYSSLNLSHALQIVAFEIRK 164 >gi|254525547|ref|ZP_05137599.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str. MIT 9202] gi|221536971|gb|EEE39424.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str. MIT 9202] Length = 249 Score = 62.5 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%) Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K + +A+I G E +GL A ++ +LN+S+A ++ LY Sbjct: 104 FDWTLSFKKINNLAIIFGREDRGLTNSELLLANKTFNIPTSQNNPSLNLSHAVSIVLYEL 163 Query: 277 QNHFAK 282 K Sbjct: 164 NKSSKK 169 >gi|298502286|ref|YP_003724226.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|298237881|gb|ADI69012.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A] Length = 180 Score = 62.5 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 3/165 (1%) Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 L + + +VL P N G I R+ A + I P + + + Sbjct: 1 MWLFFCNGERKQVMTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKR 60 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + + + +L D + +M + ++ ++ + G E K Sbjct: 61 AGLDYWDKLEIYFYESLEDFISQMKGKLYLIS-KFAEKIYSEVDLSTDEDHYFLFGREDK 119 Query: 239 GLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 GL +E + M +++LNVSN + +Y Sbjct: 120 GLPEDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 164 >gi|218681117|ref|ZP_03529014.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium etli CIAT 894] Length = 347 Score = 62.5 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 87/262 (33%), Gaps = 12/262 (4%) Query: 21 AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-----NNPSRKIFQLLATK 75 A + + + ++ T + G V L + ++L + Sbjct: 7 AIDSADDPRIAEFRDIRER-DLTGRDNRFVAEGT-VVLRMLADAHAQDRGFSAEKILLLR 64 Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA----LETAPLLSPTLDAVRN 131 N + + ++ + LDA+ Sbjct: 65 NRVDGVLPILERLPGRCAGLCRRGRCFSTASSVSICIAAFSRSGRREDRGEAALLDALPE 124 Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L++V +++ N G++ R+A AF D ++ + + + G++ +PY R Sbjct: 125 RALVLVGCGISNHDNAGSMFRNAAAFRADAVLLDETCCDPLYRKALRVSVGSVLSVPYRR 184 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 D L + GF LS + + + ++AL++G EG+GL Sbjct: 185 GGKALDVLLALAERGFAIWTLSPHGETDIRAIPASARMALVVGTEGEGLPEALLARF-QS 243 Query: 252 AHLHMPGIIKALNVSNAAAVAL 273 A + + +LN + A +A Sbjct: 244 ARIPQSEELDSLNAATATGIAF 265 >gi|71894579|ref|YP_278687.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53] gi|71851367|gb|AAZ43976.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53] Length = 178 Score = 62.5 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 44/155 (28%), Gaps = 6/155 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK-----RYSPSESAVLAKSASGALEHI 187 L +VL N I+RS A I + A + S + Sbjct: 1 MLNIVLYQPEISPNTANIIRSCYALGAKLHIIKPLGFDLHPKYFKRAAAGRLLSDIRHEV 60 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + + + S D + K+ I + G E G+ + + Sbjct: 61 HDSYLDFYNKYKNANVFYITRYGLKSYDKVDFKNEYSKDKNIFFMFGRESTGIDKEILKN 120 Query: 248 -ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M ++++N++N + + Sbjct: 121 NIDKCLRIPMVSKMRSINLANTVCIVGFEFMRQMN 155 >gi|332358324|gb|EGJ36150.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK355] Length = 167 Score = 62.5 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L D +++M + + ++ + G E KGL + + Sbjct: 61 YDSLEDFMEQMDGRLYLISKFAEKVYSEENFAAESSH-YFMFGREDKGLPEEFMRRYPEK 119 Query: 251 MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 + M +++LNVSNA + +Y Sbjct: 120 ALRIPMNDQHVRSLNVSNAVCMIVYEALRQQN 151 >gi|148253796|ref|YP_001238381.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1] gi|146405969|gb|ABQ34475.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1] Length = 158 Score = 62.5 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 46/131 (35%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + P N G ILR I ++ L+H+ + R + Sbjct: 3 IALYQPDIPQNTGTILRLCACLGLAAHIIEPAGFAVSDRQFRRAGMDYLDHLAWRRHDSW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 + + G + + ++ + L+LG E G+ E A + + Sbjct: 63 SAFEDWRAAQGHRLLLFTTKAATSYLDFSYKADDILLLGRESAGVPDTVAEVADARLRIP 122 Query: 256 MPGIIKALNVS 266 + +++LNV+ Sbjct: 123 LRPGLRSLNVA 133 >gi|226939275|ref|YP_002794346.1| RNA methyltransferase [Laribacter hongkongensis HLHK9] gi|226714199|gb|ACO73337.1| Probable RNA methyltransferase [Laribacter hongkongensis HLHK9] Length = 268 Score = 62.5 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 20/52 (38%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +AL+ G E GL + + + +LN++ A V Y + Sbjct: 128 VALVFGNETFGLSIEEAGQCNRLVTIAGNPDYFSLNLAQAVQVMSYELFSQL 179 >gi|303326981|ref|ZP_07357423.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3] gi|302862969|gb|EFL85901.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3] Length = 247 Score = 62.5 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 25/53 (47%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++K++L+ G E +GL + + + +LN++ A + LY N Sbjct: 109 DEKVSLVFGPEDRGLNNEEITHCQRLVTIPTDAAASSLNLAQAVLLMLYECAN 161 >gi|227502001|ref|ZP_03932050.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725] gi|227077285|gb|EEI15248.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725] Length = 257 Score = 62.5 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 54/150 (36%), Gaps = 4/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + +++ + NIG ++R+A AF+ D + R + + L H Sbjct: 104 RRHSLHIAIENFENDANIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLRHHES 163 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + + + ++ L+ G EG G+ Q+ A Sbjct: 164 VDKLIAWASEEDLTVVAIDNTPGCVPLET----AELPERSLLLFGQEGPGVSAAAQDAAL 219 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G +++N AA +A++ Sbjct: 220 MTCSIAQFGSTRSINAGVAAGIAMHAWIRQ 249 >gi|58336980|ref|YP_193565.1| rRNA methylase [Lactobacillus acidophilus NCFM] gi|227903539|ref|ZP_04021344.1| SpoU family RNA methyltransferase [Lactobacillus acidophilus ATCC 4796] gi|58254297|gb|AAV42534.1| rRNA methylase [Lactobacillus acidophilus NCFM] gi|227868426|gb|EEJ75847.1| SpoU family RNA methyltransferase [Lactobacillus acidophilus ATCC 4796] Length = 184 Score = 62.5 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ + ++ + + R Sbjct: 1 MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVKVHR 60 Query: 192 ISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248 +L L+ + SS + ++ + G E GL +E Sbjct: 61 HDDLNAFLKSLGPDDEMYLISKFSSKNYVDVDYTDSKKNYYFVFGKETTGLPETFMREYY 120 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M I+ N+SN+ A+ L Sbjct: 121 DRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 151 >gi|15965575|ref|NP_385928.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium meliloti 1021] gi|307302695|ref|ZP_07582451.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C] gi|307318543|ref|ZP_07597977.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83] gi|15074756|emb|CAC46401.1| Putative tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021] gi|306895883|gb|EFN26635.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83] gi|306903059|gb|EFN33650.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C] Length = 153 Score = 62.5 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 44/134 (32%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + L + L + P N G ILR A I L ++ + + Sbjct: 1 MNDLRIALYQPDIPGNTGTILRLAACLGLSVDIIEPAGFDLSDRNLKRAGMDYIAAVTMT 60 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 R + S G + + S+ + P + L+ G E G+ E A + Sbjct: 61 RHDSWERFETWRSSTGRRLVLASTKAAAPYTRFSFRPDDVLLFGRESAGVPDHVHERADA 120 Query: 251 MAHLHMPGIIKALN 264 + M ++LN Sbjct: 121 RILIPMAPGQRSLN 134 >gi|159905005|ref|YP_001548667.1| RNA methyltransferase [Methanococcus maripaludis C6] gi|159886498|gb|ABX01435.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus maripaludis C6] Length = 234 Score = 62.5 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N + ++ G E GL+ + E + + +N+S+A +V LY Sbjct: 101 HLDLNGSLGIVFGREDDGLKNEDVEFCDILVSVPTSNKYPIMNLSHAVSVLLYEIY 156 >gi|222479804|ref|YP_002566041.1| RNA methyltransferase, TrmH family, group 1 [Halorubrum lacusprofundi ATCC 49239] gi|222452706|gb|ACM56971.1| RNA methyltransferase, TrmH family, group 1 [Halorubrum lacusprofundi ATCC 49239] Length = 290 Score = 62.5 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 21/50 (42%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A++ G EG+GL + + + LN+ AA V LY + Sbjct: 145 PTAIVFGREGRGLNNEELSQLDEVCSIPADDDYPVLNLGQAATVLLYELR 194 >gi|157413526|ref|YP_001484392.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9215] gi|157388101|gb|ABV50806.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9215] Length = 250 Score = 62.5 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%) Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K + +A+I G E +GL A ++ +LN+S+A ++ LY Sbjct: 104 FDWTLSFKKINNLAIIFGREDRGLTNSELLLANKTFNIPTSQNNPSLNLSHAVSIVLYEL 163 Query: 277 QNHFAK 282 K Sbjct: 164 NKSSKK 169 >gi|62391607|ref|YP_227009.1| SPOU rRNA methylase family protein [Corynebacterium glutamicum ATCC 13032] gi|41326949|emb|CAF20793.1| SPOU RRNA METHYLASE FAMILY PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 222 Score = 62.5 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 4/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + +++ + NIG ++R+A AF+ + + R + + L H Sbjct: 69 RRHSLHVAIENFENDANIGTVVRTANAFAVNTVHIVGRRRWNRRGAMVTDRYQHLMHHED 128 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + +++ S + L+ G EG G+ + A Sbjct: 129 VDSLLAWAIAERLTIVAIDNTPGSVPLET----AELPKNCLLLFGQEGPGVTEAARAGAL 184 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G +++N AA +A++ Sbjct: 185 MTCSIAQFGSTRSINAGVAAGIAMHAWIRQ 214 >gi|224002194|ref|XP_002290769.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220974191|gb|EED92521.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 1947 Score = 62.5 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 66/199 (33%), Gaps = 5/199 (2%) Query: 81 LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMV 137 + + ++ + + K L L + L + QL++ Sbjct: 1737 EELLIDAEQAINIEADTEEELVNFQRKIMPLDALNLSIKSMHEQKLFNAAGKKKQQLVVC 1796 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL-- 195 V+ N+ + R++ F+ ++ + + SAS Sbjct: 1797 ATLVDKVPNLAGLARTSEIFAAQTLVIPNLLVKKQDDFKSISASANDWIDMEECKEEDLL 1856 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 +K + S K + + +K L+LG E +G+ + + + Sbjct: 1857 KWLYKKKAEGFTIVGLEQTSSSKCITKTKFPEKTVLLLGKEKEGIPVQYLSAVDTCIEIP 1916 Query: 256 MPGIIKALNVSNAAAVALY 274 GII++LNV A+A++ Sbjct: 1917 QLGIIRSLNVHVTGALAIW 1935 >gi|148377353|ref|YP_001256229.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2] gi|148291399|emb|CAL58783.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2] Length = 177 Score = 62.5 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 1/94 (1%) Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE- 246 K + + + ++ ND+I L+ G E G+ + + Sbjct: 61 HDSYSDFYNKYKDKNIYYITRYGLKTYSDVDFKKEYENNDEIWLMFGKESTGIDKQVLKD 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M ++++N++N A+ + Sbjct: 121 NIDNCLRIPMISKMRSINLANCVAIVGFEVMRQI 154 >gi|330718618|ref|ZP_08313218.1| rRNA methylase (SpoU class) [Leuconostoc fallax KCTC 3537] Length = 170 Score = 62.5 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 46/152 (30%), Gaps = 4/152 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + + ++ EH+ ++ Sbjct: 1 MTNHIVLFEPVMPANTGNIARTTAGTDAVLHLIEPLGFELDDKHVKRAGLDYWEHVQLVK 60 Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248 K + ++ + + + + G E GL ++ Sbjct: 61 HPSLPDFLDTLKPTDHLYLVSKFANQDYSQPDYQATDGDHYFLFGKETTGLPEVFMRQNP 120 Query: 249 TSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279 + I++LN+SN A+ LY Sbjct: 121 EKAIRIPQDDTHIRSLNLSNTVAIVLYEALRQ 152 >gi|332289843|ref|YP_004420695.1| putative RNA methyltransferase [Gallibacterium anatis UMN179] gi|330432739|gb|AEC17798.1| putative RNA methyltransferase [Gallibacterium anatis UMN179] Length = 248 Score = 62.5 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 22/52 (42%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + K+A++ G E GL + ++ +LN++ A + Y + Sbjct: 107 HGKVAIVFGRERIGLTNEELLKCHYHLNIPANPEYSSLNLAMAVQLVSYEVR 158 >gi|289595721|ref|YP_003482417.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum boonei T469] gi|289533508|gb|ADD07855.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum boonei T469] Length = 235 Score = 62.2 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + I ++ G E GL + E S+ + +N+++AAA+ LY Sbjct: 102 WNFSGNIGIVFGRENYGLYNEEIEKCDSLITIPTSEEYPIMNITHAAAIILYEI 155 >gi|262372308|ref|ZP_06065587.1| RNA methyltransferase [Acinetobacter junii SH205] gi|262312333|gb|EEY93418.1| RNA methyltransferase [Acinetobacter junii SH205] Length = 281 Score = 62.2 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + IA++ G E +GL + A + + LNV+ A V Y + Sbjct: 115 ANLDQNIAIVFGREDRGLTNEELALANYHLTIPVNPSYGVLNVAQAIQVVCYELR 169 >gi|254424488|ref|ZP_05038206.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC 7335] gi|196191977|gb|EDX86941.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC 7335] Length = 304 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 19/50 (38%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 AL+ G E +GL + A + ALN++ A + Y Sbjct: 126 TALLFGPEDRGLSNQELIYAQQFLKIPTSDAYSALNLAQAVTICCYELSR 175 >gi|254168566|ref|ZP_04875409.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum boonei T469] gi|197622400|gb|EDY34972.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum boonei T469] Length = 243 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + I ++ G E GL + E S+ + +N+++AAA+ LY Sbjct: 110 WNFSGNIGIVFGRENYGLYNEEIEKCDSLITIPTSEEYPIMNITHAAAIILYEI 163 >gi|254169084|ref|ZP_04875921.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum boonei T469] gi|197621923|gb|EDY34501.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum boonei T469] Length = 243 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + I ++ G E GL + E S+ + +N+++AAA+ LY Sbjct: 110 WNFSGNIGIVFGRENYGLYNEEIEKCDSLITIPTSEEYPIMNITHAAAIILYEI 163 >gi|313678221|ref|YP_004055961.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45] gi|312950258|gb|ADR24853.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45] Length = 177 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 11/94 (11%), Positives = 32/94 (34%), Gaps = 1/94 (1%) Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE- 246 K + + + ++ N++I L+ G E G+ + + Sbjct: 61 HNSYSDFYNKYKDKNIHYITRYGLKTYSDVDFKKEYENNEEIWLMFGKESTGIDKQVLKD 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M ++++N++N A+ + Sbjct: 121 NIDNCLRIPMINKMRSINLANCVAIVGFEVMRQI 154 >gi|254368173|ref|ZP_04984193.1| rRNA methylase [Francisella tularensis subsp. holarctica 257] gi|134253983|gb|EBA53077.1| rRNA methylase [Francisella tularensis subsp. holarctica 257] Length = 63 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 17/33 (51%) Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +A L M G + +LNVS A +ALY T Sbjct: 28 DFLAKLPMLGEVSSLNVSVATGIALYETVRQRT 60 >gi|260912947|ref|ZP_05919432.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Pasteurella dagmatis ATCC 43325] gi|260632937|gb|EEX51103.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Pasteurella dagmatis ATCC 43325] Length = 241 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 24/62 (38%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + +K+ ++A++ G E GL + + +LN++ A + Y Sbjct: 96 CAMKAVEAVKSGQVAIVFGRERIGLTNEELLKCRYHLTIPANPEYSSLNLAMAVQLVCYE 155 Query: 276 TQ 277 + Sbjct: 156 LR 157 >gi|254822868|ref|ZP_05227869.1| hypothetical protein MintA_23264 [Mycobacterium intracellulare ATCC 13950] Length = 219 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + L+ G EG G+ T+ AT + G +++N AA +A++ Sbjct: 157 LPRECLLVFGQEGPGITDDTRSGATLTVSIAQFGSTRSINAGVAAGIAMH 206 >gi|189424323|ref|YP_001951500.1| RNA methyltransferase, TrmH family, group 1 [Geobacter lovleyi SZ] gi|189420582|gb|ACD94980.1| RNA methyltransferase, TrmH family, group 1 [Geobacter lovleyi SZ] Length = 245 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 19/51 (37%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 AL+ G E GL T A + +LN++ AA + Y Sbjct: 107 PGSAALVFGREDHGLSTADLSLCTLQATIPSSSEYGSLNLAQAALIFCYEL 157 >gi|118468653|ref|YP_885145.1| spou rRNA methylase family protein [Mycobacterium smegmatis str. MC2 155] gi|118169940|gb|ABK70836.1| spou rRNA methylase family protein [Mycobacterium smegmatis str. MC2 155] Length = 214 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNH 279 LI G EG G+ P+ Q A + G +++N AA +A++ H Sbjct: 152 LPRNCLLIFGQEGPGITPEAQAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWITRH 207 >gi|51244088|ref|YP_063972.1| hypothetical protein DP0236 [Desulfotalea psychrophila LSv54] gi|50875125|emb|CAG34965.1| hypothetical protein DP0236 [Desulfotalea psychrophila LSv54] Length = 160 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 3/106 (2%) Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 + + A IP + + +S + D + Sbjct: 54 YKTQSSDITSAWTKIPLYHYKTFAEFKDNLPFATKIVGVEMGESSIAIGDFSHPDMAVYL 113 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 LG E +GL K + S+ L G +LNV+ A ++ +Y N Sbjct: 114 LGNEQRGLSKKITDQCHSLIQLP--GEF-SLNVAVAGSIVMYDRLN 156 >gi|317970456|ref|ZP_07971846.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CB0205] Length = 239 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 23/51 (45%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 AL+ G E +GL A + L ++N+S+A AV L+ + Sbjct: 110 PAALVFGREDRGLSNAELLQAGRILRLETSEAYASMNLSHAVAVCLHELRR 160 >gi|270291465|ref|ZP_06197687.1| RNA methyltransferase, TrmH family, group 2 [Pediococcus acidilactici 7_4] gi|270280311|gb|EFA26147.1| RNA methyltransferase, TrmH family, group 2 [Pediococcus acidilactici 7_4] Length = 172 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 231 LILGAEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279 + G E GL ++ A + I+ALN+SN+ A+ +Y Sbjct: 104 FLFGKETTGLPETFMRQYADCAIRIPQNDQHIRALNLSNSVAIVIYEVLRQ 154 >gi|18310293|ref|NP_562227.1| hypothetical protein CPE1311 [Clostridium perfringens str. 13] gi|18144973|dbj|BAB81017.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 153 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L +VL P N G I R+ V + I + L ++ + Sbjct: 1 MNLNIVLYQPEIPQNTGNIARTCVLTNSKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEI 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + D ++K + + ++ + ++ G E G+ A Sbjct: 61 HESYEDFMKKYGDKKIYLSTTHA--EDHYDEVKYEEGAFIMFGRESAGVPEDVH-NAHHG 117 Query: 252 AHLHMPGII-KALNVSNAAAVALYITQNHF 280 + M ++LN+SN A+ Y Sbjct: 118 IKVQMINTTTRSLNLSNTVAIIAYEALRQI 147 >gi|113477325|ref|YP_723386.1| RNA methyltransferase [Trichodesmium erythraeum IMS101] gi|110168373|gb|ABG52913.1| RNA methyltransferase, TrmH family, group 1 [Trichodesmium erythraeum IMS101] Length = 248 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 1/54 (1%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HFAK 282 ALI G E +GL A + +LN++ A A+ Y + Sbjct: 111 ALIFGREDRGLTNVELNYAQRFVRIQSDDSYPSLNLAQAVAICCYELYQAQLNQ 164 >gi|303248777|ref|ZP_07335029.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio fructosovorans JJ] gi|302489864|gb|EFL49793.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio fructosovorans JJ] Length = 274 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K+A++ G E GL + + ++ +LN++ A V Y Sbjct: 133 GKVAVVFGPEDAGLSNHETQLCGRLVNIPTSDAATSLNLAQAVLVMCYEMFK 184 >gi|301155740|emb|CBW15208.1| predicted methyltransferase [Haemophilus parainfluenzae T3T1] Length = 239 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 21/55 (38%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++A++ G E GL + ++ +LN++ A + Y + Sbjct: 100 CAYQGQVAIVFGRERVGLTNEELLKCHYHLNIPANPEYSSLNLAMAVQLVSYEMR 154 >gi|113460425|ref|YP_718487.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT] gi|170717774|ref|YP_001783505.1| RNA methyltransferase [Haemophilus somnus 2336] gi|112822468|gb|ABI24557.1| possible tRNA/rRNA methyltransferase [Haemophilus somnus 129PT] gi|168825903|gb|ACA31274.1| RNA methyltransferase, TrmH family, group 1 [Haemophilus somnus 2336] Length = 246 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + K+A++ G E GL + +LN++ A + Y + Sbjct: 106 SQKVAIVFGRERVGLTNDELLKCHYHLTIPANPEYSSLNLAMAVQLISYELR 157 >gi|227529001|ref|ZP_03959050.1| SpoU family RNA methyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227351013|gb|EEJ41304.1| SpoU family RNA methyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 169 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + + ++ + ++ + + Sbjct: 1 MTNHIVLFEPLFPANTGNIARTCAGTNTELHLIKPLGFSTDDKHMKRAGLDYWDKVKITY 60 Query: 192 ISNLTDALQKMHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETAT 249 +L + + + + + + + G E GL + + Sbjct: 61 HDDLREFVSTVPDISKLYLVSKFASRDYTDVDYTADGDHYFLFGKETTGLPEEFMRRYPE 120 Query: 250 SMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + + I+ALN+SN+AA+ +Y Sbjct: 121 NAIRIPQNDNNIRALNLSNSAAIVIYEALRQ 151 >gi|317050583|ref|YP_004111699.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5] gi|316945667|gb|ADU65143.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5] Length = 267 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + ++ L+ G E GL L ++N++ A + L+ H Sbjct: 115 QHTAAHKRVGLLFGNEAHGLDNAALSHCRYRLALPTDSGYTSMNLAQAVLIVLWELHRH 173 >gi|260776734|ref|ZP_05885629.1| tRNA:Cm32/Um32 methyltransferase [Vibrio coralliilyticus ATCC BAA-450] gi|260607957|gb|EEX34222.1| tRNA:Cm32/Um32 methyltransferase [Vibrio coralliilyticus ATCC BAA-450] Length = 241 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + +T + +LN++ A Y + Sbjct: 109 VALVFGRERTGLTNEELQTCHYHVCIPANPEYSSLNLAMAVQTLSYEVR 157 >gi|238021057|ref|ZP_04601483.1| hypothetical protein GCWU000324_00954 [Kingella oralis ATCC 51147] gi|237868037|gb|EEP69043.1| hypothetical protein GCWU000324_00954 [Kingella oralis ATCC 51147] Length = 266 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 IAL+ G E GL + + + +LN++ A V Y +H Sbjct: 136 IALVFGNETYGLSIDEVQQCNRLMTISGNPDYFSLNLAQAVQVVCYELFSHVN 188 >gi|118592061|ref|ZP_01549455.1| tRNA/rRNA methyltransferase (SpoU) [Stappia aggregata IAM 12614] gi|118435357|gb|EAV42004.1| tRNA/rRNA methyltransferase (SpoU) [Stappia aggregata IAM 12614] Length = 233 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A +LG E L P+ E + + I NV+ A A+ +Y + Sbjct: 150 AYVLGPERGSLSPQMLERCDHVVKIPTKFCI---NVAMAGAIVMYDRHRALGR 199 >gi|171691857|ref|XP_001910853.1| hypothetical protein [Podospora anserina S mat+] gi|170945877|emb|CAP72678.1| unnamed protein product [Podospora anserina S mat+] Length = 680 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLH-MPGI--IKALNVSNAAAVAL 273 K L+LG+EG+GL + A ++ M G + +LNV+ A A+ Sbjct: 597 KRTPCVLLLGSEGEGLDRLVVKKADYELNIPSMAGQSVVDSLNVNVAGALLC 648 Score = 42.9 bits (99), Expect = 0.057, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 15/92 (16%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD------------ANLPHPFPVKTVP 97 FLYG +V AAL + RK+++L + R + PV+ V Sbjct: 351 FLYGSSSVEAALRSGRRKLYKLYIQQGDDVRESQNADDIKAEKVIRTLAKQKSVPVEVVS 410 Query: 98 PQ---TIDKIVGKEAVHQGLALETAPLLSPTL 126 + + + H G LE + L P + Sbjct: 411 GKYGMRLMSKMSSSRPHNGFVLEASALPQPPI 442 >gi|171057904|ref|YP_001790253.1| RNA methyltransferase [Leptothrix cholodnii SP-6] gi|170775349|gb|ACB33488.1| RNA methyltransferase, TrmH family, group 1 [Leptothrix cholodnii SP-6] Length = 252 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 21/51 (41%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +++A + G+E G+ + + +LN++ A + Y + Sbjct: 111 ERVAFVFGSERYGMSNEEVYRCQICLSIPTQPDYGSLNLAQAVQLMAYEWR 161 >gi|146319351|ref|YP_001199063.1| rRNA methyltransferase [Streptococcus suis 05ZYH33] gi|145690157|gb|ABP90663.1| rRNA methyltransferase, TrmH family [Streptococcus suis 05ZYH33] Length = 125 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 231 LILGAEGKGLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + G E KGL +E + M +++LNVSN A + +Y Sbjct: 57 FLFGREDKGLPEDFMREHPEKAIRIPMNDEHVRSLNVSNTACMIVYEALRQ 107 >gi|22537728|ref|NP_688579.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R] gi|76786761|ref|YP_330206.1| RNA methyltransferase [Streptococcus agalactiae A909] gi|77409466|ref|ZP_00786159.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus agalactiae COH1] gi|22534618|gb|AAN00452.1|AE014264_7 RNA methyltransferase, TrmH family, group 2 [Streptococcus agalactiae 2603V/R] gi|76561818|gb|ABA44402.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909] gi|77171933|gb|EAO75109.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus agalactiae COH1] Length = 182 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 46/146 (31%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + L Sbjct: 20 IVLFEPQIPANTGNIARTCAATNAPLHIIRPMGFPIDDKKMKRAGLDYWDKLDVSFYDGL 79 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 + + + D + G E KGL +E A + Sbjct: 80 EEFMLSCRGKVHLISKFADKVYSDENYNDDQDH-YFMFGREDKGLPETFMREHAEKALRI 138 Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279 M +++LNVSN + +Y Sbjct: 139 PMNDEHVRSLNVSNTVCMIVYEALRQ 164 >gi|281212010|gb|EFA86171.1| probable prespore-specific protein [Polysphondylium pallidum PN500] Length = 637 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + ++ G+E G+ + +T+ + G+I LNVS A ++ L Sbjct: 502 NPLMIVFGSESDGVSKGIVKLSTNTLVIPSTGLIDCLNVSQALSIVLAECWR 553 >gi|259503023|ref|ZP_05745925.1| RNA methyltransferase [Lactobacillus antri DSM 16041] gi|259168889|gb|EEW53384.1| RNA methyltransferase [Lactobacillus antri DSM 16041] Length = 169 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + + ++ + ++ + + Sbjct: 1 MTNHIVLFEPLFPANTGNIARTCAGTNTELHLIKPLGFSTDDKHMKRAGLDYWDKVKITY 60 Query: 192 ISNLTDALQKMHSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETAT 249 +L L + + + + G E GL ++ Sbjct: 61 HDDLPAFLATIPDMKKLYIVSKFASRDYTDVDYTGTGDHYFLFGKETTGLPEAFMRKYPE 120 Query: 250 SMAHLHMPG-IIKALNVSNAAAVALYITQNH 279 + + I+ALN+SN+AA+ +Y Sbjct: 121 NAVRIPQNDDNIRALNLSNSAAIVIYEALRQ 151 >gi|182419771|ref|ZP_02951011.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521] gi|237666641|ref|ZP_04526626.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376319|gb|EDT73901.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521] gi|237657840|gb|EEP55395.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 154 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 44/150 (29%), Gaps = 3/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ V C + + ++ + Sbjct: 1 MNFNIVLYQPEIPQNTGNIARTCVLTDCKLHLIKPLGFDINEKQVKRAGLDYWS-ELNLE 59 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 I + + + + + ++ ++ ++ G E G+ Sbjct: 60 IHESYEDFLEKYGNERIFLATTHETGTHYDEIEFKSGDFIMFGRETCGVPEDVHNR-HKG 118 Query: 252 AHLHM-PGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SN A+ Y Sbjct: 119 LRVPMIKSSTRSLNLSNTVAIVAYEALRQI 148 >gi|89889903|ref|ZP_01201414.1| SpoU class rRNA methylase [Flavobacteria bacterium BBFL7] gi|89518176|gb|EAS20832.1| SpoU class rRNA methylase [Flavobacteria bacterium BBFL7] Length = 160 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 7/153 (4%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 +D + + + H P N+G + RSA + T + ++ Sbjct: 1 MKIDQLEPGYFGIGIQHGKTPENLGVLWRSAQNLGASFVFTVGKRYSKQACDTHDIVKA- 59 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 +PY D + + L++ +LGAE GL + Sbjct: 60 ---MPYFHYDTFEDFYNHLPKGAMIIGVELDNRAIDLQEFRHPRNCVYLLGAEDHGLTNE 116 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 E + + P +LNV+ A ++ +Y Sbjct: 117 AIEKSHHLIKFDTPK---SLNVAVAGSIIMYDR 146 >gi|16082580|ref|NP_394470.1| rRNA methylase [Thermoplasma acidophilum DSM 1728] Length = 251 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 27/64 (42%) Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 E + KIAL+ G E GLR + E ++ N+S+A A+ LY+ Sbjct: 104 FWEEMSDQGGKIALVFGREDDGLRNEEIEKCNYFINIPGNPEYPVYNLSHAVAIILYVMF 163 Query: 278 NHFA 281 F Sbjct: 164 TRFN 167 >gi|77412361|ref|ZP_00788672.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus agalactiae CJB111] gi|77161581|gb|EAO72581.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus agalactiae CJB111] Length = 182 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 46/146 (31%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A I P + + ++ + + +L Sbjct: 20 IVLFEPQIPANTGNIARTCAATXAPLHIIRPMGFPIDDKKMKRAGLDYWDKLDVSFYDSL 79 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 + + + D + G E KGL +E A + Sbjct: 80 EEFMLSCRGKVHLISKFADKVYSDENYNDDQDH-YFMFGREDKGLPETFMREHAEKALRI 138 Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279 M +++LNVSN + +Y Sbjct: 139 PMNDEHVRSLNVSNTVCMIVYEALRQ 164 >gi|318040301|ref|ZP_07972257.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0101] Length = 241 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%) Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + + AL+ G E +GL A + L +LN+S+A A+ L+ Sbjct: 97 RWLWQGSRGDAGAALVFGREDRGLSNAELLQAGRLVRLATSEAYASLNLSHAVAICLHEL 156 Query: 277 Q 277 Q Sbjct: 157 Q 157 >gi|32265877|ref|NP_859909.1| rRNA methylase (SpoU class) [Helicobacter hepaticus ATCC 51449] gi|32261926|gb|AAP76975.1| predicted rRNA methylase (SpoU class) [Helicobacter hepaticus ATCC 51449] Length = 156 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 2/147 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 +VL P N G I R VA + + L ++ +H+ + Sbjct: 4 FQIVLVQPQIPQNTGNIGRLCVATDSVLHLIHPLGFSTTQKELKRAGLDYWQHLQVYEWA 63 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA- 252 +L + + S+ +++ + L G E GL T Sbjct: 64 DLNTFW-HSYPPSKRHFFFSTKAQQLYYDADFSQGGFLYFGREDAGLNEDILHTYQKQVY 122 Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++++N++ + ALY Sbjct: 123 KLPMKAGVRSINLATSVGAALYEGVRQ 149 >gi|306836991|ref|ZP_07469940.1| tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC 49726] gi|304567130|gb|EFM42746.1| tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC 49726] Length = 242 Score = 61.8 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 54/150 (36%), Gaps = 4/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + +++ + NIG ++R+A AF+ D + R + + L H Sbjct: 89 RRHSLHIAIENFENDGNIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLRHHES 148 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + + + ++ L+ G EG G+ Q+ A Sbjct: 149 VDKLIAWASEEDLTVVAIDNTPGCVPLET----AELPERALLLFGQEGPGVSAAAQDAAL 204 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G +++N AA +A++ Sbjct: 205 MTCSIAQFGSTRSINAGVAAGIAMHAWIRQ 234 >gi|242791156|ref|XP_002481702.1| RNA methyltransferase, putative [Talaromyces stipitatus ATCC 10500] gi|218718290|gb|EED17710.1| RNA methyltransferase, putative [Talaromyces stipitatus ATCC 10500] Length = 536 Score = 61.8 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 11/57 (19%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPG-----------IIKALNVSNAAAVAL 273 L+LG EG GL P+ + A + + +LNVS AAA+ + Sbjct: 443 PTVLMLGNEGTGLLPRIKAQADGYVSIPGARIRPDLGINDAARVDSLNVSVAAALLM 499 Score = 38.7 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 8/86 (9%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD------ANLPHPFPVK--TVPPQ 99 + F+YG+ V AA+ RK++ L + L + L VK Sbjct: 189 SEFIYGLSAVDAAIRCTRRKLYMLYIYQAVGEELSPEKIALRKLALARGIQVKMAFAGWD 248 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT 125 + + H G+ LE +P+ Sbjct: 249 KLLDKMSAGRPHNGVILEASPMPQIP 274 >gi|325690961|gb|EGD32961.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK115] Length = 184 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 3/169 (1%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L T + + +VL P N G I R+ A + I P + Sbjct: 1 MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDR 60 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + ++ + + +L D +++M + ++ E+ + G Sbjct: 61 KMKRAGLDYWDKLNITYYESLGDFMEQMDGRLYLIS-KFAEKVYSEEKFAAEGSHYFMFG 119 Query: 235 AEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 E KGL + + + M +++LNVSNA + +Y Sbjct: 120 REDKGLPEEFMRRHPEKALRIPMNDQHVRSLNVSNAVCMIVYEALRQQN 168 >gi|146321556|ref|YP_001201267.1| rRNA methyltransferase [Streptococcus suis 98HAH33] gi|145692362|gb|ABP92867.1| rRNA methyltransferase, TrmH family [Streptococcus suis 98HAH33] Length = 125 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 231 LILGAEGKGLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + G E KGL +E + M +++LNVSN A + +Y Sbjct: 57 FLFGREDKGLPEDFMREHPEKAIRIPMNDEHVRSLNVSNTACMIVYEALRQ 107 >gi|116515392|ref|YP_815944.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae D39] gi|116075968|gb|ABJ53688.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae D39] Length = 167 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L D + +M + ++ N+ + G E KGL +E Sbjct: 61 YESLEDFMSQMKGKLYLIS-KFAEKVYSDVDLSTNEDHYFLFGREDKGLPEDFMREHPEK 119 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151 >gi|262283231|ref|ZP_06060998.1| rRNA methylase [Streptococcus sp. 2_1_36FAA] gi|262261483|gb|EEY80182.1| rRNA methylase [Streptococcus sp. 2_1_36FAA] Length = 168 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 3/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + +L Sbjct: 6 IVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDISYYESL 65 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 D ++KM + ++ E K K + G E KGL + ++ + Sbjct: 66 EDFMEKMDGQLYLVS-KFAEKVYSEEDFSKEGKHYFMFGREDKGLPEEFMRQHPEKALRI 124 Query: 255 HMPGI-IKALNVSNAAAVALYITQNHFA 281 M +++LNVSN + +Y Sbjct: 125 PMNDQHVRSLNVSNTVCMIVYEALRQQN 152 >gi|25011677|ref|NP_736072.1| hypothetical protein gbs1637 [Streptococcus agalactiae NEM316] gi|77407097|ref|ZP_00784097.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus agalactiae H36B] gi|77414904|ref|ZP_00791009.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus agalactiae 515] gi|24413217|emb|CAD47296.1| Unknown [Streptococcus agalactiae NEM316] gi|77159049|gb|EAO70255.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus agalactiae 515] gi|77174292|gb|EAO77161.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus agalactiae H36B] gi|319745537|gb|EFV97839.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC 13813] Length = 182 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + +L Sbjct: 20 IVLFEPQIPANTGNIARTCAATNAPLHIIRPMGFPIDDKKMKRAGLDYWDKLDVSFYDSL 79 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 + + + D + G E KGL +E A + Sbjct: 80 EEFMLSCRGKVHLISKFADKVYSDENYNDDQDH-YFMFGREDKGLPETFMREHAEKALRI 138 Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279 M +++LNVSN + +Y Sbjct: 139 PMNDEHVRSLNVSNTVCMIVYEALRQ 164 >gi|157150281|ref|YP_001450942.1| rRNA methylase [Streptococcus gordonii str. Challis substr. CH1] gi|157075075|gb|ABV09758.1| rRNA methylase [Streptococcus gordonii str. Challis substr. CH1] Length = 168 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 3/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + +L Sbjct: 6 IVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDISYYESL 65 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 D ++KM + ++ E K K + G E KGL + ++ + Sbjct: 66 EDFMEKMDGQLYLVS-KFAEKVYSEEDFSKEGKHYFMFGREDKGLPEEFMRQHPEKALRI 124 Query: 255 HMPGI-IKALNVSNAAAVALYITQNHFA 281 M +++LNVSN + +Y Sbjct: 125 PMNDQHVRSLNVSNTVCMIVYEALRQQN 152 >gi|149370475|ref|ZP_01890164.1| predicted rRNA methylase (SpoU class) [unidentified eubacterium SCB49] gi|149356026|gb|EDM44583.1| predicted rRNA methylase (SpoU class) [unidentified eubacterium SCB49] Length = 151 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGI-IKALNVSNAAAVALYITQN 278 D I L+ G E GL + + ++ + + I+++N++NA +V +Y Sbjct: 88 WDIPFEDDIMLLFGKESSGLPAEILKKHPDNLYKIPLHSDHIRSINIANAVSVTVYEGLR 147 Query: 279 HFA 281 + Sbjct: 148 QLS 150 >gi|307704142|ref|ZP_07641067.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597] gi|307622300|gb|EFO01312.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597] Length = 167 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L D + +M + ++ ++ + G E KGL +E Sbjct: 61 YESLEDFMSQMKGKLYLIS-KFAEKVYSDVDLSTDEDHYFLFGREDKGLPEDFMREHPEK 119 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151 >gi|298710915|emb|CBJ49268.1| expressed unknown protein [Ectocarpus siliculosus] Length = 1681 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 19/49 (38%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+LG E GL + G++++LN + A+ L Sbjct: 1628 LVLGRENSGLPLDVIGEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQ 1676 >gi|289168639|ref|YP_003446908.1| rRNA methylase [Streptococcus mitis B6] gi|288908206|emb|CBJ23048.1| rRNA methylase [Streptococcus mitis B6] Length = 167 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L D + +M + ++ N+ + G E KGL +E Sbjct: 61 YESLEDFMSQMKGKLYLIS-KFAEKVYSDVDLSTNEDHYFLFGREDKGLPEDFMREHPEK 119 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151 >gi|313471787|sp|A2RKW7|TRML_LACLM RecName: Full=Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase llmg_1343 gi|300070939|gb|ADJ60339.1| putative rRNA methyltransferase [Lactococcus lactis subsp. cremoris NZ9000] Length = 169 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 4/151 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I R+ A + + L ++ + + + Sbjct: 1 MNHIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPK-TQETAT 249 NL D + + G + + + +DK + G E GL + E Sbjct: 61 KNLQDFMNSIADGGQLYLVSKFAEHVYSDVDYSDDKKDHYFLFGREDTGLPEEFMHEHRD 120 Query: 250 SMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN A + +Y Sbjct: 121 ECIRIPMNDEHVRSLNLSNCACMIVYEALKQ 151 >gi|256255515|ref|ZP_05461051.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti B1/94] gi|261222725|ref|ZP_05937006.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti B1/94] gi|260921309|gb|EEX87962.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti B1/94] Length = 249 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 105/254 (41%), Gaps = 17/254 (6%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I + + +F + D+ +L +RD ++ ++ R G V Sbjct: 1 MQDIDTRSHDCVFVIDDADDIRLAP-YRDIREKDLVGRQQR-------FIAEG-KVVLNV 51 Query: 61 L--NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117 L ++ + LL +N L L LP PV +VP +D + G VH+G+ Sbjct: 52 LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110 Query: 118 TAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 P L + L++VL +++ N+G+I R+A AF D ++ + Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + + GA +PY + D + GF + L+ + + + + ++ AL+L Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230 Query: 234 GAEGKGLRPKTQET 247 G EG+GL + E Sbjct: 231 GTEGEGLPSRLLER 244 >gi|67906560|gb|AAY82666.1| predicted RNA methyltransferase [uncultured bacterium MedeBAC49C08] Length = 239 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 29/74 (39%), Gaps = 1/74 (1%) Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + +++ K E + +K++++ G E GL + + +LN Sbjct: 88 MPWPMMEINNLGKIINESLARKEKVSIVFGNEAVGLDNEDLGKCDFHLQIPTSED-SSLN 146 Query: 265 VSNAAAVALYITQN 278 +S+A + + Sbjct: 147 LSHAVQIVAHEIYK 160 >gi|307708135|ref|ZP_07644602.1| rna methyltransferase, trmh family, group 2 [Streptococcus mitis NCTC 12261] gi|307615581|gb|EFN94787.1| rna methyltransferase, trmh family, group 2 [Streptococcus mitis NCTC 12261] Length = 167 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L D + +M + ++ ++ + G E KGL +E Sbjct: 61 YESLEDFMSQMKGKLYLIS-KFAEKVYSDVDLSTDEDHYFLFGREDKGLPEDFMREHPEK 119 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151 >gi|114568580|ref|YP_755260.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10] gi|114339042|gb|ABI64322.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10] Length = 178 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 49/153 (32%), Gaps = 8/153 (5%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 ++ + + ++ P N+GAILR+A AF T A +A A Sbjct: 4 MKRGYFGVGAEGISKPMNMGAILRTAHAFGASFAFTLNASHQVRDVYRADTAKSA---DH 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + S ++ L A + G E L + Q+ Sbjct: 61 VPYYEWPDLSAMALPSNCQLVGIELAEDAVDLPSFRHPLCAAYVFGRERGSLSQEVQDRC 120 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + + + + NVS A A+ LY Sbjct: 121 SHIVKIPTKFCV---NVSVACAITLYD--RQIN 148 >gi|257053717|ref|YP_003131550.1| RNA methyltransferase, TrmH family, group 1 [Halorhabdus utahensis DSM 12940] gi|256692480|gb|ACV12817.1| RNA methyltransferase, TrmH family, group 1 [Halorhabdus utahensis DSM 12940] Length = 237 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 19/49 (38%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + L+ G E GL + + + LN+ AA + LY + Sbjct: 110 VCLVFGREDVGLSNEELAEVDQICSIPASDDYPVLNLGQAATIVLYELR 158 >gi|307710428|ref|ZP_07646867.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564] gi|307618840|gb|EFN97977.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564] Length = 167 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L D + +M + +++ ++ + G E KGL +E Sbjct: 61 YESLEDFMSQMKGKLYLIS-KFAENVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEK 119 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151 >gi|319938705|ref|ZP_08013069.1| TrmH family RNA methyltransferase [Streptococcus anginosus 1_2_62CV] gi|319811755|gb|EFW08021.1| TrmH family RNA methyltransferase [Streptococcus anginosus 1_2_62CV] Length = 170 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 3/155 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + Q +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MTTFQNHIVLFEPQIPQNTGNIARTCAATNSPLHIILPMGFPIDDRKMKRAGLDYWDKLD 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQET 247 NL + + KM + + + G E KGL + Sbjct: 61 ITYYDNLEEFMSKMDGQLYLISKFAEKVYVEENFATA-GNHYFMFGREDKGLPEDFMRAH 119 Query: 248 ATSMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + + M +++LN+SN + +Y Sbjct: 120 SEKALRIPMNDEHVRSLNLSNTVCMLVYEALRQQN 154 >gi|19553964|ref|NP_601966.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032] gi|21325544|dbj|BAC00166.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032] Length = 206 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 4/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + +++ + NIG ++R+A AF+ + + R + + L H Sbjct: 53 RRHSLHVAIENFENDANIGTVVRTANAFAVNTVHIVGRRRWNRRGAMVTDRYQHLMHHED 112 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + +++ S + L+ G EG G+ + A Sbjct: 113 VDSLLAWAIAERLTIVAIDNTPGSVPLET----AELPKNCLLLFGQEGPGVTEAARAGAL 168 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G +++N AA +A++ Sbjct: 169 MTCSIAQFGSTRSINAGVAAGIAMHAWIRQ 198 >gi|159899747|ref|YP_001545994.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC 23779] gi|159892786|gb|ABX05866.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC 23779] Length = 241 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E +GL E + + + + +LN+++A +ALY + Sbjct: 109 TAPVAFVFGREDRGLDNAAIEQCSQLISIPVDPSYPSLNLADAVLLALYTIR 160 >gi|312869514|ref|ZP_07729669.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus oris PB013-T2-3] gi|311094961|gb|EFQ53250.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus oris PB013-T2-3] Length = 169 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + + ++ + ++ + + Sbjct: 1 MTNHIVLFEPLFPANTGNIARTCAGTNTELHLIKPLGFSTDDKHMKRAGLDYWDKVKITY 60 Query: 192 ISNLTDALQKMHSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETAT 249 +L L + + ++ + G E GL ++ Sbjct: 61 HDDLPAFLATIPDMEKLYIVSKFANHDYTDVDYTGAGDHYFLFGKETTGLPEAFMRKYPE 120 Query: 250 SMAHLHMPG-IIKALNVSNAAAVALYITQNH 279 + + I+ALN+SN+AA+ +Y Sbjct: 121 NAIRIPQNDDNIRALNLSNSAAIVIYEALRQ 151 >gi|312141301|ref|YP_004008637.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S] gi|311890640|emb|CBH49959.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S] Length = 233 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G EG G+ + A+ + G +++N AA +A++ Sbjct: 171 LPRDCLLLFGQEGPGVTEQGHAVASMTVSIAQFGSTRSINAGVAAGIAMHTWIRQ 225 >gi|325673864|ref|ZP_08153554.1| TrmH family RNA methyltransferase [Rhodococcus equi ATCC 33707] gi|325555129|gb|EGD24801.1| TrmH family RNA methyltransferase [Rhodococcus equi ATCC 33707] Length = 233 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G EG G+ + A+ + G +++N AA +A++ Sbjct: 171 LPRDCLLLFGQEGPGVTEQGHAVASMTVSIAQFGSTRSINAGVAAGIAMHTWIRQ 225 >gi|329119228|ref|ZP_08247915.1| RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327464575|gb|EGF10873.1| RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 269 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 22/59 (37%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + AL+ G E GL + ++ + + +LN++ A V Y + Sbjct: 129 HTARAGCRAALVFGNETFGLSIEEVQSCNRLMTIAGNPAYFSLNLAQAVQVVAYELYSQ 187 >gi|13357828|ref|NP_078102.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|167971944|ref|ZP_02554221.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|168282436|ref|ZP_02690103.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|168308590|ref|ZP_02691265.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|170762254|ref|YP_001752351.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|11357050|pir||F82913 rRNA methylase UU268 [imported] - Ureaplasma urealyticum gi|6899239|gb|AAF30677.1|AE002123_10 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827831|gb|ACA33093.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902611|gb|EDT48900.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675800|gb|EDT87705.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700642|gb|EDU18924.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 172 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 38/129 (29%), Gaps = 1/129 (0%) Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 + I+ KR+ + + + F T Sbjct: 28 NLHLVRPYGFILDKKRFHKDFIRASTNHLNALKLYEYDDFNEFINKNNISGDEIYFFTRY 87 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGL-RPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + Q I + L+ G E G+ ++ + + +++LN++N+ A Sbjct: 88 GTKTPCDYQYQNIIQHNVYLVFGKESTGIDHNILKKYPHNWIRIPTSINLRSLNIANSVA 147 Query: 271 VALYITQNH 279 + +Y Sbjct: 148 MGIYEVVRQ 156 >gi|313675966|ref|YP_004053962.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126] gi|312942664|gb|ADR21854.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126] Length = 170 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 69/169 (40%), Gaps = 3/169 (1%) Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 + + Q++++ +++ P N+G I+R + AF + I ++ + Sbjct: 1 MIQKEHEHIENTKHDLQIVLIAENIRTPENLGMIMRLSEAFGLEKIYFVGEHAIDLTTKA 60 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQT---IGLSSDSKKPLEQEIKNDKIALIL 233 +++ + + Y + ++ ++ G+ + K+ LI+ Sbjct: 61 KRASRNTYKTMDYEFVVDVKKQFSQLLEVGYHAIALEITKFSEPIHNLRINNQKKVVLII 120 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 G+E +G+ + + + H+ M G ++NV NA ++ L+ + K Sbjct: 121 GSERQGISEELLQFCQNHYHIPMFGGNSSINVVNALSIGLFKITENPNK 169 >gi|82701806|ref|YP_411372.1| RNA methyltransferase TrmH, group 1 [Nitrosospira multiformis ATCC 25196] gi|82409871|gb|ABB73980.1| RNA methyltransferase TrmH, group 1 [Nitrosospira multiformis ATCC 25196] Length = 267 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + H+ +LN+++A V Y + Sbjct: 132 VALVFGTEMSGLTTLEVSKCQIIIHIPANPEYSSLNLASAVQVMAYELR 180 >gi|145296765|ref|YP_001139586.1| hypothetical protein cgR_2669 [Corynebacterium glutamicum R] gi|140846685|dbj|BAF55684.1| hypothetical protein [Corynebacterium glutamicum R] Length = 206 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 21/55 (38%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G EG G+ + A + G +++N AA +A++ Sbjct: 144 LPKNCLLLFGQEGPGVTEAARAGALMTCSIAQFGSTRSINAGVAAGIAMHAWIRQ 198 >gi|114569563|ref|YP_756243.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10] gi|114340025|gb|ABI65305.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10] Length = 249 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 24/49 (48%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +K+A++ G E GL + A + L + +LN++ A AV Y Sbjct: 111 EKVAVMFGGEKSGLPNEAVNMADVIITLPVDRSFSSLNLAQAVAVIAYE 159 >gi|290953872|ref|ZP_06558493.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|295312775|ref|ZP_06803512.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica URFT1] Length = 200 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 62/192 (32%), Gaps = 7/192 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 + + + + + L + ++VLD + DP NIG IL Sbjct: 15 KKYIITEKDFEALSQTQNPQGVL---ILAEKLKLEQLSFDDDFILVLDRIQDPGNIGTIL 71 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A+A +I + + GA + + I+NL + + Sbjct: 72 RTAIAVGLKEVILINGTVDPFNPKAIMAGMGAQFSLKFGYITNLAELKNIAKLQQRKIWL 131 Query: 212 LSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + + L+ G E G+ + + I++LNV+ AA Sbjct: 132 TTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIESLNVAQAAT 188 Query: 271 VALYITQNHFAK 282 + L+ + Sbjct: 189 IYLFEGLRQRLR 200 >gi|300780369|ref|ZP_07090225.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC 33030] gi|300534479|gb|EFK55538.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC 33030] Length = 223 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 51/151 (33%), Gaps = 4/151 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 R + +++ + NIG ++R+A AF + + R + + + H Sbjct: 69 QRRHPFHVAIENFENDMNIGTVVRTANAFMAEAVHIVGRKRWNRRGAMVTDRYQHIIHHE 128 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + + + S + L+ G EG G+ + Q+ A Sbjct: 129 TVDDLLEWATARGVAVVAIDNTPGSVPLET----AELPRDCVLLFGQEGPGVTAEAQQAA 184 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G +++N AA +A++ Sbjct: 185 VMTCSIAQFGSTRSINAGVAAGIAMHTWIRQ 215 >gi|226953026|ref|ZP_03823490.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] gi|226836233|gb|EEH68616.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] Length = 278 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA++ G E +GL + A + + LNV+ A V Y + Sbjct: 118 QQNIAIVFGREDRGLTNEELALANYHLTIPVNPEYGVLNVAQAIQVVCYELR 169 >gi|145640333|ref|ZP_01795917.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae R3021] gi|145274919|gb|EDK14781.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 22.4-21] Length = 205 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 KIA++ G E GL + ++ +LN++ A + Y + Sbjct: 103 KGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR 154 >gi|169833898|ref|YP_001693989.1| RNA methyltransferase [Streptococcus pneumoniae Hungary19A-6] gi|168996400|gb|ACA37012.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus pneumoniae Hungary19A-6] Length = 167 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L D + +M + ++ ++ + G E KGL +E Sbjct: 61 YESLEDFMSQMKGKLYLIS-KFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEK 119 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151 >gi|168035469|ref|XP_001770232.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678449|gb|EDQ64907.1| predicted protein [Physcomitrella patens subsp. patens] Length = 287 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA---LYI 275 +A++ G E +GL + T + + +LN+S+A AV LY Sbjct: 115 NLAIVFGREDRGLTNEELMYCTHVCSIPSIQSAGSLNLSHAVAVVLSRLYE 165 >gi|116071061|ref|ZP_01468330.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. BL107] gi|116066466|gb|EAU72223.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. BL107] Length = 256 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 IA++ G E +GL + LH +LN+S++ + L+ Sbjct: 111 PGPIAVVFGREDRGLSNDELRLCQRVLTLHSGSDYPSLNLSHSVGIVLHDLAR 163 >gi|197104457|ref|YP_002129834.1| tRNA/rRNA methyltransferase [Phenylobacterium zucineum HLK1] gi|196477877|gb|ACG77405.1| tRNA/rRNA methyltransferase [Phenylobacterium zucineum HLK1] Length = 261 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 24/51 (47%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ L+ G E GL + ++ + + ++LN++ A A+ Y + Sbjct: 113 QRVGLLFGGERAGLETQDIALCQAVVTIPIDPRFRSLNLAQAVAINAYEWR 163 >gi|78213466|ref|YP_382245.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CC9605] gi|78197925|gb|ABB35690.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CC9605] Length = 243 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 22/51 (43%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +A++ G E +GL + L +LN+S+A AV L+ Sbjct: 107 PMAMVFGREDRGLSNSELRLCQRVLCLQSGEAYPSLNLSHAVAVVLHELAR 157 >gi|309808741|ref|ZP_07702627.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 01V1-a] gi|308167977|gb|EFO70109.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 01V1-a] Length = 94 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 1/59 (1%) Query: 222 QEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G E GL +E + M I+A N++N+ A+ L+ Sbjct: 17 YTDPTKNYYFVFGKETTGLPKTFMREYYERNLRIPMSDHIRAFNLANSVAIVLFEALRQ 75 >gi|308189701|ref|YP_003922632.1| spoU class tRNA/rRNA methylase [Mycoplasma fermentans JER] gi|319776885|ref|YP_004136536.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64] gi|238809672|dbj|BAH69462.1| hypothetical protein [Mycoplasma fermentans PG18] gi|307624443|gb|ADN68748.1| spoU class tRNA/rRNA methylase [Mycoplasma fermentans JER] gi|318037960|gb|ADV34159.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64] Length = 177 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 10/98 (10%), Positives = 33/98 (33%), Gaps = 1/98 (1%) Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + K + + + ++ KN ++ ++ G E G+ + Sbjct: 57 QHEVHASYKDFYEKYKNKNIFYLTRYGLKTYTDVDFKKEYKKNKEVWIMFGKESTGIDKE 116 Query: 244 TQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + + M ++++N++N A+ + Sbjct: 117 ILQTHLENCLRIPMMSEMRSINLANTVAIVGFEIMRQL 154 >gi|294650616|ref|ZP_06727971.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|292823499|gb|EFF82347.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 278 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA++ G E +GL + A + + LNV+ A V Y + Sbjct: 118 QQNIAIVFGREDRGLTNEELALANYNLTIPVNPEYGVLNVAQAIQVVCYELR 169 >gi|15673131|ref|NP_267305.1| hypothetical protein L161988 [Lactococcus lactis subsp. lactis Il1403] gi|281491644|ref|YP_003353624.1| TrmH family RNA methyltransferase [Lactococcus lactis subsp. lactis KF147] gi|12724112|gb|AAK05247.1|AE006347_5 hypothetical protein L161988 [Lactococcus lactis subsp. lactis Il1403] gi|281375362|gb|ADA64875.1| RNA methyltransferase, TrmH family [Lactococcus lactis subsp. lactis KF147] gi|326406695|gb|ADZ63766.1| TrmH family RNA methyltransferase [Lactococcus lactis subsp. lactis CV56] Length = 169 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 48/151 (31%), Gaps = 4/151 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I R+ A + + L ++ + + + Sbjct: 1 MNHIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPK-TQETAT 249 NL D + ++ G + + + + + G E GL + E Sbjct: 61 KNLDDFMNSINDGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHRD 120 Query: 250 SMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN A + +Y Sbjct: 121 ECIRIPMNDEHVRSLNLSNCACMIVYEALKQ 151 >gi|224368391|ref|YP_002602554.1| TrmH1 [Desulfobacterium autotrophicum HRM2] gi|223691107|gb|ACN14390.1| TrmH1 [Desulfobacterium autotrophicum HRM2] Length = 226 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +N+++AL+ G E +GL ++ ++ G +LN++ A + Y Sbjct: 79 CENNRVALLFGPEDRGLTNGEICFCHALINIPTLG-FSSLNLAQAVVIVCYEL 130 >gi|168492652|ref|ZP_02716795.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus pneumoniae CDC3059-06] gi|225860508|ref|YP_002742017.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus pneumoniae Taiwan19F-14] gi|183576971|gb|EDT97499.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus pneumoniae CDC3059-06] gi|225726857|gb|ACO22708.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus pneumoniae Taiwan19F-14] Length = 167 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L D + +M + ++ ++ + G E KGL +E Sbjct: 61 YESLEDFMSQMKGKLYLIS-KFAEKIYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEK 119 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151 >gi|78184293|ref|YP_376728.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9902] gi|78168587|gb|ABB25684.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. CC9902] Length = 253 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + IA++ G E +GL + LH +LN+S++ + L+ Sbjct: 106 HQPGPIAVVFGREDRGLSNDELRLCQRVLTLHSGSDYPSLNLSHSVGIVLHDMAR 160 >gi|315223322|ref|ZP_07865183.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus anginosus F0211] gi|315187754|gb|EFU21508.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus anginosus F0211] Length = 170 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 3/153 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + Q +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MTTFQNHIVLFEPQIPQNTGNIARTCAATNSPLHIILPMGFPIDDRKMKRAGLDYWDKLD 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQET 247 NL + + KM + + + G E KGL + Sbjct: 61 ITYYDNLEEFMSKMDGQLYLISKFAEKVYAEENFATA-GNHYFMFGREDKGLPEDFMRAH 119 Query: 248 ATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + + M +++LN+SN + +Y Sbjct: 120 SEKALRIPMNDEHVRSLNLSNTVCMMVYEALRQ 152 >gi|268324809|emb|CBH38397.1| putative tRNA/rRNA methyltransferase [uncultured archaeon] Length = 234 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 19/46 (41%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ G E GL + + + +N+S+A AV LY Sbjct: 111 ILFGREDVGLLNDELKLCDLVVSIPTSPEYPVMNLSHAVAVILYEL 156 >gi|148543814|ref|YP_001271184.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016] gi|184153219|ref|YP_001841560.1| rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227364718|ref|ZP_03848767.1| SpoU family RNA methyltransferase [Lactobacillus reuteri MM2-3] gi|325682655|ref|ZP_08162172.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A] gi|148530848|gb|ABQ82847.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus reuteri DSM 20016] gi|183224563|dbj|BAG25080.1| rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227070177|gb|EEI08551.1| SpoU family RNA methyltransferase [Lactobacillus reuteri MM2-3] gi|324978494|gb|EGC15444.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A] Length = 169 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 52/153 (33%), Gaps = 3/153 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + + ++ + ++ + + Sbjct: 1 MTNHIVLFEPLFPANTGNIARTCAGTNTELHLIKPLGFSTDDKHMKRAGLDYWDKVKITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQ-ETAT 249 +L ++ + I + + + + + G E GL + + Sbjct: 61 HEDLPSFMKTIPDINRLYIVSKFATHDYSDVDYTGEGDHYFLFGKETTGLPERFMQKYPE 120 Query: 250 SMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + + I+ALN+SN+AA+ +Y Sbjct: 121 NAIRIPQNDNNIRALNLSNSAAIVIYEALRQQN 153 >gi|307711340|ref|ZP_07647760.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321] gi|307616856|gb|EFN96036.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321] Length = 167 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L D + +M + ++ ++ + G E KGL +E Sbjct: 61 YESLEDFMSQMKGKLYLIS-KFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEK 119 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151 >gi|72382535|ref|YP_291890.1| RNA methyltransferase [Prochlorococcus marinus str. NATL2A] gi|72002385|gb|AAZ58187.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str. NATL2A] Length = 245 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 IAL+ G E +GL + A + L+ +LN+S+A A+ L+ N Sbjct: 112 IALVFGREDRGLSNEELLKANKVISLNTSEDYPSLNLSHAVAIVLHQF-NQLN 163 >gi|293364757|ref|ZP_06611474.1| TrmH family RNA methyltransferase [Streptococcus oralis ATCC 35037] gi|307703003|ref|ZP_07639950.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC 35037] gi|331265674|ref|YP_004325304.1| RNA methyltransferase, putative rRNA methylase [Streptococcus oralis Uo5] gi|291316207|gb|EFE56643.1| TrmH family RNA methyltransferase [Streptococcus oralis ATCC 35037] gi|307623396|gb|EFO02386.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC 35037] gi|326682346|emb|CBY99963.1| RNA methyltransferase, putative rRNA methylase [Streptococcus oralis Uo5] Length = 167 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L D + +M + + D + G E KGL +E Sbjct: 61 YDSLEDFMSQMKGKLYLISKFAEKVYSEANLASSEDH-YFLFGREDKGLPEDFMREHPEK 119 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151 >gi|89056101|ref|YP_511552.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1] gi|88865650|gb|ABD56527.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1] Length = 166 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQE-TATSMAHLHMP-GIIKALNVSNAAAVALYITQNHF 280 LI G E KGL + A HL M I++LN+SNAA +Y F Sbjct: 107 YPSDAYLIFGKETKGLPSEVLNGRAHRTFHLPMRSPHIRSLNLSNAATAVIYQAMRSF 164 >gi|194468370|ref|ZP_03074356.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus reuteri 100-23] gi|194453223|gb|EDX42121.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus reuteri 100-23] Length = 169 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 52/151 (34%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + + ++ + ++ + + Sbjct: 1 MTNHIVLFEPLFPANTGNIARTCAGTNTELHLIKPLGFSTDDKHMKRAGLDYWDKVKITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQ-ETAT 249 +L ++ + I + + + + + G E GL + + Sbjct: 61 HEDLPSFMKTIPDINRLYIVSKFATHDYSDVDYTGEGDHYFLFGKETTGLPERFMQKYPE 120 Query: 250 SMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + + I+ALN+SN+AA+ +Y Sbjct: 121 NAIRIPQNDNNIRALNLSNSAAIVIYEALRQ 151 >gi|73540818|ref|YP_295338.1| RNA methyltransferase TrmH, group 1 [Ralstonia eutropha JMP134] gi|72118231|gb|AAZ60494.1| RNA methyltransferase TrmH, group 1 [Ralstonia eutropha JMP134] Length = 314 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA + G E GL E ++ H+ + +LN++ A + Y + Sbjct: 159 IAFVFGNERYGLPNDVVERCVAVTHIPANPVYASLNLAQAVQLIAYEMR 207 >gi|116512002|ref|YP_809218.1| rRNA methylase (SpoU class) [Lactococcus lactis subsp. cremoris SK11] gi|116107656|gb|ABJ72796.1| Predicted rRNA methylase (SpoU class) [Lactococcus lactis subsp. cremoris SK11] Length = 169 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 4/151 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I R+ A + + L ++ + + + Sbjct: 1 MNHIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPK-TQETAT 249 NL D + + G + + + + + G E GL + E Sbjct: 61 KNLQDFMDSIADGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHRD 120 Query: 250 SMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN A + +Y Sbjct: 121 ECIRIPMNDEHVRSLNLSNCACMIVYEALKQ 151 >gi|254501987|ref|ZP_05114138.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11] gi|222438058|gb|EEE44737.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11] Length = 209 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A +LG E L P+ E + + I NV+ A A+ +Y Sbjct: 126 AYVLGPERGSLSPQMLERCDHVVKIPTKFCI---NVAMAGAIVMYDRHR 171 >gi|184155041|ref|YP_001843381.1| rRNA methyltransferase [Lactobacillus fermentum IFO 3956] gi|260663585|ref|ZP_05864474.1| rRNA methyltransferase [Lactobacillus fermentum 28-3-CHN] gi|183226385|dbj|BAG26901.1| rRNA methyltransferase [Lactobacillus fermentum IFO 3956] gi|260551811|gb|EEX24926.1| rRNA methyltransferase [Lactobacillus fermentum 28-3-CHN] Length = 168 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 45/150 (30%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + ++ + ++ + + + Sbjct: 1 MTNHIVLFEPLFPANTGNIARTCAGTDTVLHLIKPLGFSTDDKHMKRAGLDYWDKVKVVY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATS 250 +L L + + ++ + G E GL + Sbjct: 61 HDDLVAFLDSIDLDHLYIVSKFAERDYSEVDYTIAGDHYFLFGKETTGLPEGFMRRYPEK 120 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + I+ALN+SN AA+ +Y Sbjct: 121 AIRIPQDDNNIRALNLSNTAAIVIYEALRQ 150 >gi|158423491|ref|YP_001524783.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571] gi|158330380|dbj|BAF87865.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571] Length = 289 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +AL+ G E GL + S+ L + +LN++ A AV Y Sbjct: 121 EDVALVFGRERTGLYTEEVSLCDSILTLPVNPAFASLNLATAVAVTAYEWSK 172 >gi|126696500|ref|YP_001091386.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9301] gi|126543543|gb|ABO17785.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9301] Length = 250 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%) Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K + +A+I G E +GL A ++ +LN+S+A ++ LY Sbjct: 104 FDWTLSFKKINNLAIIFGREDRGLTNNELLLANKTFNIPTSQDNPSLNLSHAVSIVLYEL 163 Query: 277 QNHFAK 282 K Sbjct: 164 NKSSKK 169 >gi|227514833|ref|ZP_03944882.1| SpoU family RNA methyltransferase [Lactobacillus fermentum ATCC 14931] gi|227086823|gb|EEI22135.1| SpoU family RNA methyltransferase [Lactobacillus fermentum ATCC 14931] Length = 168 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 44/150 (29%), Gaps = 2/150 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + ++ + ++ + + + Sbjct: 1 MTNHIVLFEPLFPANTGNIARTCAGTDTVLHLIKPLGFSTDDKHMKRAGLDYWDKVKVVY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATS 250 +L L + ++ + G E GL + Sbjct: 61 HDDLVAFLDSIDLDHLYIASKFAERDYSEVDYTIAGDHYFLFGKETTGLPEGFMRRYPEK 120 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + I+ALN+SN AA+ +Y Sbjct: 121 AIRIPQDDNNIRALNLSNTAAIVIYEALRQ 150 >gi|108759067|ref|YP_630311.1| RNA methyltransferase [Myxococcus xanthus DK 1622] gi|108462947|gb|ABF88132.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622] Length = 243 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 27/54 (50%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++AL+ G E +G+ + T + + + ++N++ ++AV LY+ Sbjct: 108 RGRVALVFGGEQRGMSDEDLARCTDVLAIPTSAVQPSMNLAQSSAVLLYLCHRQ 161 >gi|219125928|ref|XP_002183221.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405496|gb|EEC45439.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 119 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 24/51 (47%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 E + + L+LG E +G+ + + + GII++LNV + A Sbjct: 69 CEFQYPDAPTVLLLGKEKEGIPVEYLQLVDQCVEIPQLGIIRSLNVHVSGA 119 >gi|120437322|ref|YP_863008.1| tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117579472|emb|CAL67941.1| tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 154 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 7/150 (4%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D + + + + P N+G + RSA I T ++ A+ Sbjct: 4 DNLEQGFFGIGIQNGKTPENLGVLWRSAQNMGASFIYTIGNRYSKQACDTH----KAVGA 59 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +PY D + ++S + LE + +LGAE GL + + Sbjct: 60 MPYFHYETFEDFYAHLPKGAMLVGVELNESAEHLEDFKHPRRCVYLLGAEDHGLSNQAID 119 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276 A + +LNVS A ++ +Y Sbjct: 120 KAHYLVK---FKSTLSLNVSVAGSIVMYDR 146 >gi|219127773|ref|XP_002184103.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404334|gb|EEC44281.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 389 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 66/178 (37%), Gaps = 7/178 (3%) Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163 + T + L+ LD + D N+G+++R A AF ++ Sbjct: 202 LACGFVPENRNFAWLMEYFRKTRMSGEGELRLLALDGICDTANLGSVVRCASAFGVHAVL 261 Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK----- 218 +K + + G + IP +R+ NL AL + F ++ Sbjct: 262 LSKDCCDPWYRRAVRVSMGHIFRIPCVRVDNLVQALTALSQEPFAVTSYAAVIDPRADLL 321 Query: 219 --PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + Q I+G+EGKG+ + AT+ + M + +L+V A + L+ Sbjct: 322 LENIAQGAIPKSWCCIVGSEGKGISCDVIQAATTTLRIGMYDHVDSLSVPVATGILLH 379 >gi|121611165|ref|YP_998972.1| tRNA/rRNA methyltransferase SpoU [Verminephrobacter eiseniae EF01-2] gi|121555805|gb|ABM59954.1| tRNA/rRNA methyltransferase (SpoU) [Verminephrobacter eiseniae EF01-2] Length = 266 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 17/52 (32%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G+E G+ + +LN+ A V Y + Sbjct: 119 PTGVAFLFGSERFGMSNADVYRCHVTLSIPTQPGFGSLNLGAAVQVIAYEWR 170 >gi|298674492|ref|YP_003726242.1| RNA methyltransferase, TrmH family, group 1 [Methanohalobium evestigatum Z-7303] gi|298287480|gb|ADI73446.1| RNA methyltransferase, TrmH family, group 1 [Methanohalobium evestigatum Z-7303] Length = 232 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + K+A++ G E G + H+ +N+S++AAV Y N Sbjct: 108 DGKVAILFGREDNGFTNDELRLCDMIVHIPANEEYPIMNISHSAAVIFYELSN 160 >gi|76802521|ref|YP_327529.1| tRNA/rRNA methyltransferase [Natronomonas pharaonis DSM 2160] gi|76558386|emb|CAI49977.1| probable tRNA/rRNA methyltransferase [Natronomonas pharaonis DSM 2160] Length = 264 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + ++ G E GL + + G LN++ AA + LY + Sbjct: 107 LDADVCIVFGRERVGLTNDELAQLDRICSIPADGDYPVLNLAQAATIVLYELR 159 >gi|258627176|ref|ZP_05721964.1| RNA methyltransferase, TrmH family [Vibrio mimicus VM603] gi|258580478|gb|EEW05439.1| RNA methyltransferase, TrmH family [Vibrio mimicus VM603] Length = 244 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + ++ +LN++ A + Y + Sbjct: 110 VAMVFGRERTGLTNDELQLCHYHVYVPANPEYSSLNLAMAVQLLSYEVR 158 >gi|158334964|ref|YP_001516136.1| RNA methyltransferase [Acaryochloris marina MBIC11017] gi|158305205|gb|ABW26822.1| RNA methyltransferase, TrmH family, group 1 [Acaryochloris marina MBIC11017] Length = 250 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 I + ALI G E +GL + A + + ALN++ A + Y + Sbjct: 103 PWILEGEAALIFGPEDRGLSNEELYHAQAFLQIPTSSDYAALNLAQAVTICCYELRQ 159 >gi|53803244|ref|YP_115015.1| RNA methyltransferase [Methylococcus capsulatus str. Bath] gi|53757005|gb|AAU91296.1| RNA methyltransferase, TrmH family, group 1 [Methylococcus capsulatus str. Bath] Length = 247 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 20/50 (40%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A++ G E GL E + H+ +LN++ A V Y Sbjct: 108 RSAIVFGREHSGLTNGELEQCHFLLHIASNPEFSSLNLACAVQVVAYELY 157 >gi|320335161|ref|YP_004171872.1| TrmH family RNA methyltransferase [Deinococcus maricopensis DSM 21211] gi|319756450|gb|ADV68207.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus maricopensis DSM 21211] Length = 261 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 AL+ G E GL + + + G +LN++ A + Y Sbjct: 106 ALVFGPEETGLSSDDLQLCQATVRIPT-GEYASLNLAQAVLLVCYEFLQ 153 >gi|124026236|ref|YP_001015352.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. NATL1A] gi|123961304|gb|ABM76087.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. NATL1A] Length = 245 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 IAL+ G E +GL + A + L+ +LN+S+A A+ L+ N Sbjct: 112 IALVFGREDRGLSNEELLKANKVISLNTSEDYPSLNLSHAVAIVLHQF-NQLN 163 >gi|10640325|emb|CAC12139.1| conserved hypothetical protein [Thermoplasma acidophilum] Length = 291 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 27/64 (42%) Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 E + KIAL+ G E GLR + E ++ N+S+A A+ LY+ Sbjct: 144 FWEEMSDQGGKIALVFGREDDGLRNEEIEKCNYFINIPGNPEYPVYNLSHAVAIILYVMF 203 Query: 278 NHFA 281 F Sbjct: 204 TRFN 207 >gi|332359116|gb|EGJ36937.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK49] Length = 184 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 3/169 (1%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L T + + +VL P N G I R+ A + I P + Sbjct: 1 MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDR 60 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + ++ + + +L D +++M + ++ E + G Sbjct: 61 KMKRAGLDYWDKLDITYYESLDDFMEQMDGHLYLIS-KFAEKVYSEENFAAKGSHYFMFG 119 Query: 235 AEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 E KGL + + + M +++LNVSN + +Y Sbjct: 120 REDKGLPEEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168 >gi|328946856|gb|EGG40993.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1087] Length = 184 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 3/169 (1%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L T + + +VL P N G I R+ A + I P + Sbjct: 1 MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDR 60 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + ++ + + +L D +++M + + D + G Sbjct: 61 KMKRAGLDYWDKLDITYYESLDDFMEQMDGRLYLISKFAEKVYSEENYA-AEDSHYFMFG 119 Query: 235 AEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 E KGL + + + M +++LNVSN+ + +Y Sbjct: 120 REDKGLPEEFMRRHPEKALRIPMNDQHVRSLNVSNSVCMIVYEALRQQN 168 >gi|327470430|gb|EGF15886.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK330] Length = 167 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L D ++++ + ++ E + G E KGL + + Sbjct: 61 YESLDDFMEQIDGHLYLIS-KFAEKVYSEENFAAKGSHYFMFGREDKGLPEEFMRRHPEK 119 Query: 251 MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 151 >gi|332077772|gb|EGI88233.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae GA41301] Length = 167 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L D + ++ + ++ ++ + G E KGL +E Sbjct: 61 YESLEDFMSQIKGKLYLIS-KFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEK 119 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151 >gi|15900400|ref|NP_345004.1| RNA methyltransferase [Streptococcus pneumoniae TIGR4] gi|111657132|ref|ZP_01407916.1| hypothetical protein SpneT_02001643 [Streptococcus pneumoniae TIGR4] gi|148983867|ref|ZP_01817186.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP3-BS71] gi|148993522|ref|ZP_01823013.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP9-BS68] gi|148996883|ref|ZP_01824601.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP11-BS70] gi|149003702|ref|ZP_01828547.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP14-BS69] gi|149012635|ref|ZP_01833632.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP19-BS75] gi|168482732|ref|ZP_02707684.1| CspR [Streptococcus pneumoniae CDC1873-00] gi|168485607|ref|ZP_02710115.1| CspR [Streptococcus pneumoniae CDC1087-00] gi|168488175|ref|ZP_02712374.1| CspR [Streptococcus pneumoniae SP195] gi|168576802|ref|ZP_02722652.1| CspR [Streptococcus pneumoniae MLV-016] gi|225856208|ref|YP_002737719.1| CspR [Streptococcus pneumoniae P1031] gi|225858329|ref|YP_002739839.1| CspR [Streptococcus pneumoniae 70585] gi|237649475|ref|ZP_04523727.1| CspR [Streptococcus pneumoniae CCRI 1974] gi|237822188|ref|ZP_04598033.1| CspR [Streptococcus pneumoniae CCRI 1974M2] gi|303255626|ref|ZP_07341676.1| RNA methyltransferase [Streptococcus pneumoniae BS455] gi|303259549|ref|ZP_07345526.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP-BS293] gi|303262412|ref|ZP_07348355.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP14-BS292] gi|303264829|ref|ZP_07350746.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae BS397] gi|303266816|ref|ZP_07352696.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae BS457] gi|303269075|ref|ZP_07354856.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae BS458] gi|307067120|ref|YP_003876086.1| putative rRNA methylase [Streptococcus pneumoniae AP200] gi|307126705|ref|YP_003878736.1| CspR [Streptococcus pneumoniae 670-6B] gi|14971957|gb|AAK74644.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae TIGR4] gi|147757458|gb|EDK64497.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP11-BS70] gi|147758264|gb|EDK65265.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP14-BS69] gi|147763440|gb|EDK70377.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP19-BS75] gi|147924014|gb|EDK75126.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP3-BS71] gi|147927891|gb|EDK78912.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP9-BS68] gi|172043851|gb|EDT51897.1| CspR [Streptococcus pneumoniae CDC1873-00] gi|183571281|gb|EDT91809.1| CspR [Streptococcus pneumoniae CDC1087-00] gi|183572995|gb|EDT93523.1| CspR [Streptococcus pneumoniae SP195] gi|183577487|gb|EDT98015.1| CspR [Streptococcus pneumoniae MLV-016] gi|225720184|gb|ACO16038.1| CspR [Streptococcus pneumoniae 70585] gi|225726295|gb|ACO22147.1| CspR [Streptococcus pneumoniae P1031] gi|301793708|emb|CBW36095.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae INV104] gi|301799560|emb|CBW32112.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae OXC141] gi|301801379|emb|CBW34065.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae INV200] gi|302597411|gb|EFL64507.1| RNA methyltransferase [Streptococcus pneumoniae BS455] gi|302636511|gb|EFL67003.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP14-BS292] gi|302639483|gb|EFL69941.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP-BS293] gi|302641388|gb|EFL71754.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae BS458] gi|302643654|gb|EFL73921.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae BS457] gi|302645696|gb|EFL75926.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae BS397] gi|306408657|gb|ADM84084.1| Predicted rRNA methylase (SpoU class) [Streptococcus pneumoniae AP200] gi|306483767|gb|ADM90636.1| CspR [Streptococcus pneumoniae 670-6B] gi|327390900|gb|EGE89240.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae GA04375] gi|332075333|gb|EGI85803.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae GA17570] gi|332076933|gb|EGI87395.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae GA17545] gi|332202382|gb|EGJ16451.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae GA41317] gi|332203662|gb|EGJ17729.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae GA47368] gi|332204506|gb|EGJ18571.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae GA47901] Length = 167 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L D + +M + ++ ++ + G E KGL +E Sbjct: 61 YESLEDFISQMKGKLYLIS-KFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEK 119 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151 >gi|256070798|ref|XP_002571729.1| rna methyltransferase-related [Schistosoma mansoni] gi|238656876|emb|CAZ27959.1| rna methyltransferase-related [Schistosoma mansoni] Length = 407 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 56/182 (30%), Gaps = 4/182 (2%) Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 I ++ + G++ + L S+ + D + + + Sbjct: 223 NIWNEKVIRAGMSGHFRIPVYQGLSWTDISRYFGICDSSSSHVIVFVADPEPLLTDKLIE 282 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 K+ + + ++E ++ + + Sbjct: 283 SAWKKDQTNHQSQYINKCKISVECEAVDFLTPESTDSAYRLPVQTIPHFSVNYIPSDYNS 342 Query: 223 EIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKALNVSNAAAVALYITQN 278 E N ++A+++G+E G+ P+ + I +LNV +AA+V L Q Sbjct: 343 EEHNCRLAVVIGSEAHGVSPEAFHLVHLTGGSRLVIPSADRISSLNVLSAASVLLGEIQR 402 Query: 279 HF 280 F Sbjct: 403 QF 404 >gi|296004590|ref|XP_001351812.2| RNA methyltransferase, putative [Plasmodium falciparum 3D7] gi|225631701|emb|CAD51619.2| RNA methyltransferase, putative [Plasmodium falciparum 3D7] Length = 351 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 101/274 (36%), Gaps = 13/274 (4%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 +L+++ Y + + R K + +K + + F+ +T+ N + + +L Sbjct: 79 NLQNNEYLYISKKSRMMKYIIRLRKKKNFRKKNNSFFVKDSNTILHLSKNKNIQFEAVLG 138 Query: 74 TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVR 130 T + + + + ++ I + + + Sbjct: 139 TNKDILNNFKN---KQCTKLYYINKDILNYIFSDTLNVRRQDKNDAVAIIKIPCLSNKIN 195 Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N + L+VLD + +N+G IL A +F+ D + TK + + + + G +IP+I Sbjct: 196 NIKFLLVLDRIRYAYNLGKILNVAYSFNIDCLYYTKHTADPYNPKVMEITKGTHLNIPHI 255 Query: 191 RISN------LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + + + + KK + + I LILG+E G Sbjct: 256 FGNYQELEQLCKEHKLIPIVAHTKGQNIDTFFKKNKIKNNNINGICLILGSESTGPHTDV 315 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + A L M + +LNV AA++ ++ + Sbjct: 316 FKYA-HPIQLPMHEMTNSLNVFVAASILIHYIKK 348 >gi|159491280|ref|XP_001703599.1| predicted protein [Chlamydomonas reinhardtii] gi|158270618|gb|EDO96457.1| predicted protein [Chlamydomonas reinhardtii] Length = 148 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHM-PGIIKALNVSNAAAVALYIT 276 +AL+LG+EG+GL + S + M PG +++LNV A ++ ++ Sbjct: 100 VALVLGSEGQGLSGAVRALC-SPVAVPMTPGAMESLNVGVAGSLLMFAL 147 >gi|291320022|ref|YP_003515280.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae] gi|290752351|emb|CBH40322.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae] Length = 177 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 11/94 (11%), Positives = 31/94 (32%), Gaps = 1/94 (1%) Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246 K + + + ++ N++I L+ G E G+ + Sbjct: 61 HDSYSDFYNKYKDKNIYYITRYGLKTYTDVNFKKEYEDNEEIWLMFGKESTGIDKQVLHN 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M ++++N++N A+ + Sbjct: 121 NIDNCLRIPMISKMRSINLANCVAIVGFEVMRQI 154 >gi|219870434|ref|YP_002474809.1| tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165] gi|219690638|gb|ACL31861.1| tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165] Length = 242 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+A++ G E GL + + +LN++ A +A Y + Sbjct: 107 QGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLACYELR 158 >gi|325970709|ref|YP_004246900.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy] gi|324025947|gb|ADY12706.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy] Length = 247 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 17/44 (38%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ G E GL + + + +LN+S A + + Sbjct: 116 IVFGRESDGLTDDEVAQCSQVVTIPTSDQFPSLNLSQAVQIVTF 159 >gi|308270583|emb|CBX27195.1| hypothetical protein N47_A12240 [uncultured Desulfobacterium sp.] Length = 256 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 N+KIA++ G+E +GL + + ++ +LNVS A + Y Sbjct: 111 NNKIAILFGSEDRGLVNEDIRLCHELINIP-SSDFSSLNVSQAVLLVCYEL 160 >gi|162448639|ref|YP_001611006.1| tRNA (guanosine-2'-O-)-methyltransferase [Sorangium cellulosum 'So ce 56'] gi|161159221|emb|CAN90526.1| tRNA (guanosine-2'-O-)-methyltransferase [Sorangium cellulosum 'So ce 56'] Length = 508 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 26/54 (48%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++AL+LG E G+RP + M G ++LNVS AA+ L N Sbjct: 148 PRLALVLGNERDGIRPDLAAACARAVRVPMRGFAESLNVSVTAAILLEHATNGR 201 >gi|307942542|ref|ZP_07657890.1| RNA methyltransferase [Roseibium sp. TrichSKD4] gi|307774181|gb|EFO33394.1| RNA methyltransferase [Roseibium sp. TrichSKD4] Length = 181 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 A +LG E L P+ + + + I NV+ A A+ +Y + Sbjct: 98 AYVLGPERGSLSPQMLDRCDHVIKIPTKFCI---NVAMAGAIVMYDRHRALGR 147 >gi|307545466|ref|YP_003897945.1| SpoU-family rRNA methylase [Halomonas elongata DSM 2581] gi|307217490|emb|CBV42760.1| putative SpoU-family rRNA methylase [Halomonas elongata DSM 2581] Length = 244 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 3/56 (5%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI---TQNHF 280 +AL+ G E GL + + LN+S A V Y Sbjct: 109 PVALVFGRERFGLTNDEIRDCSHQVSIPANPDYGVLNLSQAVQVLAYETFGAWRRL 164 >gi|294791453|ref|ZP_06756610.1| SpoU rRNA methylase family protein [Scardovia inopinata F0304] gi|294457924|gb|EFG26278.1| SpoU rRNA methylase family protein [Scardovia inopinata F0304] Length = 228 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 4/99 (4%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 H + + + I ++ ++ + L+ G E + Sbjct: 123 YHDMTHVVIHPNFTNLVESMPDSRIISFTAQARTLYTEVDYQPNDILLFGPEPGNIPDPM 182 Query: 245 ----QETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + M +++LN++N AA+ALY Sbjct: 183 DIMSGDHIYKQVRFPMRPSLRSLNLANCAAIALYEAWRQ 221 >gi|332526708|ref|ZP_08402810.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2] gi|332111111|gb|EGJ11143.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2] Length = 231 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 1/54 (1%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +D++A + G E GL + +LN++ A + Y Sbjct: 99 DDRVAFVFGPERTGLANDDVYRCHVCLSIPTHPDYGSLNLAQAVQILAYD-WRQ 151 >gi|148988231|ref|ZP_01819694.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP6-BS73] gi|149025477|ref|ZP_01836413.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP23-BS72] gi|168490616|ref|ZP_02714759.1| CspR [Streptococcus pneumoniae CDC0288-04] gi|221231328|ref|YP_002510480.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC 700669] gi|225854043|ref|YP_002735555.1| CspR [Streptococcus pneumoniae JJA] gi|298230513|ref|ZP_06964194.1| CspR [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254233|ref|ZP_06977819.1| CspR [Streptococcus pneumoniae str. Canada MDR_19A] gi|147926695|gb|EDK77768.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP6-BS73] gi|147929427|gb|EDK80423.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP23-BS72] gi|183574827|gb|EDT95355.1| CspR [Streptococcus pneumoniae CDC0288-04] gi|220673788|emb|CAR68290.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC 700669] gi|225722323|gb|ACO18176.1| CspR [Streptococcus pneumoniae JJA] Length = 167 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L D + +M + ++ ++ + G E KGL +E Sbjct: 61 YESLEDFISQMKGKLYLIS-KFAEKIYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEK 119 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151 >gi|282851419|ref|ZP_06260784.1| putative RNA methyltransferase, TrmH family, group 2 [Lactobacillus gasseri 224-1] gi|282557387|gb|EFB62984.1| putative RNA methyltransferase, TrmH family, group 2 [Lactobacillus gasseri 224-1] Length = 141 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 1/59 (1%) Query: 222 QEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 N + G E GL +E + M I+ N+SN+ A+ L Sbjct: 49 YTDPNKDYYFVFGKETTGLPETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 107 >gi|284165121|ref|YP_003403400.1| RNA methyltransferase, TrmH family, group 1 [Haloterrigena turkmenica DSM 5511] gi|284014776|gb|ADB60727.1| RNA methyltransferase, TrmH family, group 1 [Haloterrigena turkmenica DSM 5511] Length = 255 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + + + LN+ AA + LY + Sbjct: 123 PTALVFGRERVGLTNEELARIDEICSIPASDEYPVLNLGQAATITLYELR 172 >gi|292657019|ref|YP_003536916.1| RNA methyltransferase, TrmH family, group 1 [Haloferax volcanii DS2] gi|291371341|gb|ADE03568.1| RNA methyltransferase, TrmH family, group 1 [Haloferax volcanii DS2] Length = 275 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 21/51 (41%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K AL+ G EG GL + + + LN+ AA + +Y + Sbjct: 137 KTALVFGREGTGLDNEELAMLDEVCCIPADDRYPVLNLGQAATLLMYELRR 187 >gi|158522634|ref|YP_001530504.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3] gi|158511460|gb|ABW68427.1| RNA methyltransferase, TrmH family, group 1 [Desulfococcus oleovorans Hxd3] Length = 260 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + +A++ G E +GL + + ++ H+ +LN++ A V Y Sbjct: 114 CRENPVAVMFGPEDRGLENEDLQYCHNLVHIPTS-EFSSLNLAQAVLVICYEL 165 >gi|328946998|ref|YP_004364335.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM 2489] gi|328447322|gb|AEB13038.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM 2489] Length = 242 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 31/116 (26%) Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226 S S+ +K + + + E K Sbjct: 54 HASYIFDNAEYFSSITEACSDCVCSCGTTRRRGKKRKGKLLLPEEFAKTANRISGTEKKG 113 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 K+A++ G E GL + +LN+S+A + Y + K Sbjct: 114 GKVAVVFGNERTGLDDNEILECEMGVTIPSSEEFGSLNLSHAVQIMCYTLFRYNEK 169 >gi|325121908|gb|ADY81431.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 271 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA++ G E +GL + A + + LNV+ A V Y + Sbjct: 113 IAIVFGREDRGLTNEELALANYHLTIPVNPDYGVLNVAQAIQVVCYELR 161 >gi|299770509|ref|YP_003732535.1| rRNA methylase [Acinetobacter sp. DR1] gi|298700597|gb|ADI91162.1| rRNA methylase [Acinetobacter sp. DR1] Length = 279 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA++ G E +GL + A + + LNV+ A V Y + Sbjct: 121 IAIVFGREDRGLTNEELALANYHLTIPVNPDYGVLNVAQAIQVVCYELR 169 >gi|293608356|ref|ZP_06690659.1| RNA methyltransferase [Acinetobacter sp. SH024] gi|292828929|gb|EFF87291.1| RNA methyltransferase [Acinetobacter sp. SH024] Length = 279 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA++ G E +GL + A + + LNV+ A V Y + Sbjct: 121 IAIVFGREDRGLTNEELALANYHLTIPVNPDYGVLNVAQAIQVVCYELR 169 >gi|262278807|ref|ZP_06056592.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202] gi|262259158|gb|EEY77891.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202] Length = 279 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA++ G E +GL + A + + LNV+ A V Y + Sbjct: 121 IAIVFGREDRGLTNEELALANYHLTIPVNPDYGVLNVAQAIQVVCYELR 169 >gi|299116545|emb|CBN74733.1| hypothetical tRNA/rRNA methyltransferase [Ectocarpus siliculosus] Length = 220 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Query: 223 EIKNDKIALILGAEGKGLR---PKTQETATSMAHLHMPGII-KALNVSNAAAVALYITQN 278 +AL+ G E GL + A +L M + ++ N+SNA A+A+Y + Sbjct: 136 ACSEGDVALVFGNEVDGLSGLEEGERGRALPAVYLPMRDDVIRSYNLSNAVAMAVYEVER 195 Query: 279 HFAK 282 + Sbjct: 196 QRRE 199 >gi|167854979|ref|ZP_02477754.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus parasuis 29755] gi|167853936|gb|EDS25175.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus parasuis 29755] Length = 242 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+A++ G E GL + + +LN++ A +A Y + Sbjct: 107 QGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLACYELR 158 >gi|330836257|ref|YP_004410898.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM 17374] gi|329748160|gb|AEC01516.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM 17374] Length = 257 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 19/48 (39%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++++ G E GL + + + +LN++ A + Y Sbjct: 115 GPVSIVFGREANGLTDDEVGQCSLVVTIPTSDAFPSLNLAQAVQIIAY 162 >gi|308502598|ref|XP_003113483.1| hypothetical protein CRE_26502 [Caenorhabditis remanei] gi|308263442|gb|EFP07395.1| hypothetical protein CRE_26502 [Caenorhabditis remanei] Length = 1229 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 22/55 (40%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + K +++G E +G+ + G ++LNV AA+ + Sbjct: 1163 MMHNFVFPKKAVIVMGDEKEGVPVNLLRAVDQTVEIKQVGHTRSLNVHVTAALMI 1217 >gi|306832003|ref|ZP_07465158.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978951|ref|YP_004288667.1| TrmH family RNA methyltransferase, group 2 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304425929|gb|EFM29046.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178879|emb|CBZ48923.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 181 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 3/155 (1%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + + +VL P N G I R+ A + I P + + ++ + Sbjct: 10 EEPNKAMNHIVLFQPQIPQNTGNIARTCAATNAPLHIIRPMGFPIDDRKMKRAGLDYWDK 69 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQ 245 + +L + ++K ++ + G E KGL + + Sbjct: 70 LDVTFYDSLDEFMEKCDGEVHLISKFANKVYSDENYND-GKHHYFLFGREDKGLPEEFMR 128 Query: 246 ETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LN+SN + +Y Sbjct: 129 ANPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQ 163 >gi|163793894|ref|ZP_02187868.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199] gi|159181005|gb|EDP65522.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199] Length = 191 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 12/103 (11%), Positives = 26/103 (25%), Gaps = 3/103 (2%) Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + +D PL + A ++G Sbjct: 43 HEWGRVDTSDATGSLPYYPFDDPDAVMFPKGCELVGVEITDEAVPLPSFHHPRRAAYVMG 102 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 E L P+ + + ++N++ A A+ +Y Sbjct: 103 RERGALSPELLSRCDHVVRIPSRF---SINLAIAGAMVMYDRM 142 >gi|306830150|ref|ZP_07463334.1| TrmH family RNA methyltransferase [Streptococcus mitis ATCC 6249] gi|304427676|gb|EFM30772.1| TrmH family RNA methyltransferase [Streptococcus mitis ATCC 6249] Length = 167 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 3/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHF 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 NL D L +M + + + + G E KGL +E Sbjct: 61 YDNLADFLSQMKGQVYLISKFAEKVYSEANLAS-GEDQYFLFGREDKGLPEDFMREHPEK 119 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQ 149 >gi|54025941|ref|YP_120183.1| hypothetical protein nfa39710 [Nocardia farcinica IFM 10152] gi|54017449|dbj|BAD58819.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 155 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 5/142 (3%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + + H N+G + RSA+ + + T A A IP ++ Sbjct: 8 VAVWHPKHEVNVGTLWRSAMTYQASMLATIGSRYK----PQASDTCRAHNAIPLHHYRDI 63 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 D + + L + + +LGAE GL + + + Sbjct: 64 DDLIAHLPYGCPLVGVELDARAVSLNEFTHPVRALYLLGAEDHGLPAAVLDRCHHVVQIP 123 Query: 256 MPGIIKALNVSNAAAVALYITQ 277 +LNVS A ++ ++ Sbjct: 124 -SPSPWSLNVSVAGSLVMHDRW 144 >gi|309775950|ref|ZP_07670942.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae bacterium 3_1_53] gi|308916232|gb|EFP61980.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae bacterium 3_1_53] Length = 161 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 5/155 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 L +++ V DP N G ILR+ A CDG+I R S + V+ K+++GA E++ Sbjct: 5 CKSEQVFLALIEGVEDPFNFGYILRTLYAAGCDGVIIPPRNWTSAAGVVTKASAGASEYL 64 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 I +++ LQ+M + + L ++ L +G E +GL Q Sbjct: 65 NLIIANDMDALLQEMKQKDITLVCGQRSNAISLYAYTFPQRVCLAIGGEMRGLSKSVQGH 124 Query: 248 ATSMAHLHMPGIIKALN---VSNAAAVALYITQNH 279 + ++ + N + + A+ + Sbjct: 125 SDQNLYIPYRQDFR--NAMTAAASTAIFAFELVRQ 157 >gi|285018692|ref|YP_003376403.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73] gi|283473910|emb|CBA16411.1| putative trna/rrna methyltransferase protein [Xanthomonas albilineans] Length = 252 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 18/45 (40%) Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 G E GL + + + H+ +LN++ A V Y + Sbjct: 116 FGRERTGLTNEELQQCHAAVHIPSDPAFSSLNLAAAVQVLAYEVR 160 >gi|150400087|ref|YP_001323854.1| RNA methyltransferase [Methanococcus vannielii SB] gi|150012790|gb|ABR55242.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus vannielii SB] Length = 234 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ G E GL+ + E + + +N+S+A +V LY Sbjct: 110 IVFGREDDGLKNEDVELCDILVSVPTSEKYPIMNLSHAVSVILYEIY 156 >gi|114771074|ref|ZP_01448514.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium HTCC2255] gi|114548356|gb|EAU51242.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium HTCC2255] Length = 249 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 21/64 (32%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 K K+ + G E GL + A + + + +LN+S + Y Sbjct: 104 MMYARALTQKGKKVGFMFGPESSGLSNEDIAQANVLVSVPVNPEFSSLNLSQCVLLLAYE 163 Query: 276 TQNH 279 Q Sbjct: 164 WQRQ 167 >gi|308185599|ref|YP_003929730.1| RNA methyltransferase [Pantoea vagans C9-1] gi|308056109|gb|ADO08281.1| putative RNA methyltransferase [Pantoea vagans C9-1] Length = 245 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 4/59 (6%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + +AL+ G E GL + E + + M +LN+ A V Y +K Sbjct: 114 QWVNSMALVFGREDSGLTNEELEQVDLLTGIPMANDYPSLNLGQAVMVYCY----QLSK 168 >gi|306824493|ref|ZP_07457839.1| TrmH family RNA methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433280|gb|EFM36250.1| TrmH family RNA methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 167 Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 3/150 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHF 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L D + +M + ++ ++ + G E KGL +E Sbjct: 61 YDSLEDFMSQMKGKLYLIS-KFAEKVYSEADLSTDEAHYFLFGREDKGLPEDFMREHPEK 119 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQ 149 >gi|149248194|ref|XP_001528484.1| hypothetical protein LELG_01004 [Lodderomyces elongisporus NRRL YB-4239] gi|146448438|gb|EDK42826.1| hypothetical protein LELG_01004 [Lodderomyces elongisporus NRRL YB-4239] Length = 502 Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 4/50 (8%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVAL 273 + L++G+EG+G+R + + M + ++ +LNV A V L Sbjct: 449 PLLLVIGSEGRGVRTNLKNKSDFMVSIPKLRVNDDVVDSLNVGVATGVVL 498 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 26/65 (40%) Query: 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108 ++YG H V A L R I L K+ + A + +TV + I+ K Sbjct: 167 EYVYGTHPVRAVLQARKRPILGLYNFKSDDRGIIKYAEKEYGVKCQTVRDKNALNILTKN 226 Query: 109 AVHQG 113 VH G Sbjct: 227 GVHNG 231 >gi|170717985|ref|YP_001783524.1| tRNA/rRNA methyltransferase (SpoU) [Haemophilus somnus 2336] gi|168826114|gb|ACA31485.1| tRNA/rRNA methyltransferase (SpoU) [Haemophilus somnus 2336] Length = 350 Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 87/243 (35%), Gaps = 17/243 (6%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPP 98 ++ ++ +YG + + I ++ T ++ + L V V Sbjct: 107 KKNRAEEMK--VYGENACLSLFAQRPESIVRVWTTVEMAHKVGDLFSYLASNKKVYHVVD 164 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSA 154 + +V H G+ + TL D + L+VL+ V +PHNIG I+R+ Sbjct: 165 NSELALVSGTEHHGGICMLVKKRRPFTLHGYLDIPQQKNCLLVLNGVRNPHNIGGIIRTC 224 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 V + ++ + + + G P T ++ + S+ Sbjct: 225 VCYGISAVVIDDVELLHSAVAMRVAEGGMEYIHPLEIDRTETALVKLRQAGYQIVHLSSN 284 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAA 270 K ++Q +DK+A +L +E + A + +L + LNVS A Sbjct: 285 KHAKTIKQLQLDDKVAFVL-SEAD--TESLADKADELINLSLVNPLKHG---LNVSVATG 338 Query: 271 VAL 273 + L Sbjct: 339 ILL 341 >gi|320459086|dbj|BAJ69707.1| putative RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 220 Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 4/101 (3%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242 H + + + I ++ + K + L+ G E + Sbjct: 115 YHDMAHVVLHPNFDNLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPM 174 Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 E L M +++LN++N A++A+Y Sbjct: 175 DIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 215 >gi|296453627|ref|YP_003660770.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp. longum JDM301] gi|296183058|gb|ADG99939.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. longum JDM301] Length = 199 Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 4/101 (3%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242 H + + + I ++ + K + L+ G E + Sbjct: 94 YHDMAHVVLHPNFDNLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPM 153 Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 E L M +++LN++N A++A+Y Sbjct: 154 DIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 194 >gi|291456188|ref|ZP_06595578.1| RNA methyltransferase, TrmH family [Bifidobacterium breve DSM 20213] gi|291381465|gb|EFE88983.1| RNA methyltransferase, TrmH family [Bifidobacterium breve DSM 20213] Length = 220 Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 4/101 (3%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242 H + + + I ++ + K + L+ G E + Sbjct: 115 YHDMAHVVLHPNFDNLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPM 174 Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 E L M +++LN++N A++A+Y Sbjct: 175 DIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 215 >gi|239622392|ref|ZP_04665423.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514389|gb|EEQ54256.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 223 Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 4/101 (3%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242 H + + + I ++ + K + L+ G E + Sbjct: 118 YHDMAHVVLHPNFDNLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPM 177 Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 E L M +++LN++N A++A+Y Sbjct: 178 DIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 218 >gi|213692908|ref|YP_002323494.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524369|gb|ACJ53116.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 169 Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 4/101 (3%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242 H + + + I ++ + K + L+ G E + Sbjct: 64 YHDMAHVVLHPNFDNLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPM 123 Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 E L M +++LN++N A++A+Y Sbjct: 124 DIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 164 >gi|23465775|ref|NP_696378.1| RNA methyltransferase [Bifidobacterium longum NCC2705] gi|23326465|gb|AAN25014.1| probable RNA methyltransferase [Bifidobacterium longum NCC2705] Length = 169 Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 4/101 (3%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242 H + + + I ++ + K + L+ G E + Sbjct: 64 YHDMAHVVLHPNFDNLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPM 123 Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 E L M +++LN++N A++A+Y Sbjct: 124 DIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 164 >gi|46191126|ref|ZP_00206684.1| COG0219: Predicted rRNA methylase (SpoU class) [Bifidobacterium longum DJO10A] gi|189439831|ref|YP_001954912.1| hypothetical protein BLD_0968 [Bifidobacterium longum DJO10A] gi|227546389|ref|ZP_03976438.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312133236|ref|YP_004000575.1| cspr [Bifidobacterium longum subsp. longum BBMN68] gi|317482584|ref|ZP_07941599.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA] gi|322688607|ref|YP_004208341.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F] gi|322690593|ref|YP_004220163.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|189428266|gb|ACD98414.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium longum DJO10A] gi|227213370|gb|EEI81242.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517295|emb|CBK70911.1| Predicted rRNA methylase (SpoU class) [Bifidobacterium longum subsp. longum F8] gi|311772439|gb|ADQ01927.1| CspR [Bifidobacterium longum subsp. longum BBMN68] gi|316916006|gb|EFV37413.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA] gi|320455449|dbj|BAJ66071.1| putative RNA methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|320459943|dbj|BAJ70563.1| putative RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F] Length = 220 Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 4/101 (3%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242 H + + + I ++ + K + L+ G E + Sbjct: 115 YHDMAHVVLHPNFDNLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPM 174 Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 E L M +++LN++N A++A+Y Sbjct: 175 DIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 215 >gi|198437016|ref|XP_002120809.1| PREDICTED: similar to RNA methyltransferase like 1 [Ciona intestinalis] Length = 413 Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 42/347 (12%), Positives = 99/347 (28%), Gaps = 67/347 (19%) Query: 2 NLISKKKSEKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 ++ + E L+ + K+ R ++KM + + S + L G + + A Sbjct: 63 EKLANFREELPPPLEKLKFRKISNETRNLFRKMINNVKSSSYRENHNVCLLRGKNLIREA 122 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHP---FPV---KTVPPQTIDKIVGKEAVHQGL 114 + + L +L D P+ + + + D + Sbjct: 123 MIAGGFIRTIYFSELKLLEKLPIDIVQKTNLVHVPIAAMREMSDERTDGLFALATQQDAK 182 Query: 115 ALETAPLLSPTLDAVRNSQLL---MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 + + S +L ++ + + DP +G IL+ A C+ + Sbjct: 183 TRQKIRTQRIESVKQKESTILPVTLICEGIKDPKIMGDILKVASCVGCEEVYVMDGCVSI 242 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-------------- 217 + + K GA +P + + + + + + LS + + Sbjct: 243 WNTSVLKRGGGAHFKLPILPNQQWENVEKLVSNSKPDAVFLSHNCEEGLTIIDFKQDPVV 302 Query: 218 ------------------------------------KPLEQEIKNDKIALILGAEGKGLR 241 + + L++G+ G Sbjct: 303 VAINKGSSVLDTLKRESTVKLDNKEDRIKNAHIPSINFDQANWPTKQSVLVVGSISFGAY 362 Query: 242 ------PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +T E + +L + ++L+ S A+V L+ K Sbjct: 363 SFAVNLQETVEQC-HVINLPLSRKTESLSPSIEASVLLFDALRQIGK 408 >gi|298206902|ref|YP_003715081.1| hypothetical protein CA2559_01575 [Croceibacter atlanticus HTCC2559] gi|83849536|gb|EAP87404.1| hypothetical protein CA2559_01575 [Croceibacter atlanticus HTCC2559] Length = 153 Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 49/156 (31%), Gaps = 7/156 (4%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 + + + + P N+G + R+A I T + +++ S Sbjct: 1 MQPNNFTTDFFGIGILNGKTPENLGVLWRTAQNLGASFIFTIGKRYAHQASDTHNSVKSM 60 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + + + G + + + + +LGAE GL + Sbjct: 61 PYYHYKDFNDFFDHLPKGVRIVGVEKTETAIQLEDFEH----PRRCVYLLGAEDHGLTRE 116 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + +LNV+ A ++ LY + Sbjct: 117 AIDRSHFLI---QFKSEFSLNVAVAGSIVLYDRSRN 149 >gi|149005602|ref|ZP_01829341.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP18-BS74] gi|147762542|gb|EDK69502.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP18-BS74] Length = 167 Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L D + +M + ++ ++ + G E KGL +E Sbjct: 61 YESLEDVISQMKGKLYLIS-KFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEK 119 Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151 >gi|332638272|ref|ZP_08417135.1| 23S rRNA methyltransferase [Weissella cibaria KACC 11862] Length = 171 Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 2/65 (3%) Query: 217 KKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMP-GIIKALNVSNAAAVALY 274 + + + G E GL ++ + I++LN+SN AA+ +Y Sbjct: 89 YHEADYTNPDHDYYFLFGKETTGLPEPFMKQHPEKALRIPQNDEHIRSLNLSNTAAIIIY 148 Query: 275 ITQNH 279 T Sbjct: 149 ETLRQ 153 >gi|227494335|ref|ZP_03924651.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436] gi|226832069|gb|EEH64452.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436] Length = 210 Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 5/172 (2%) Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 H A + R L + ++++ NIG+I+R+A A + R Sbjct: 43 HFRYWKMEAIVAELNAVKERGKWLEVAIENLGHDFNIGSIVRTANAMGVRHVHIVGRRRW 102 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 + + + + + + PLE+ + Sbjct: 103 ----NRRGAMVTDRYMQVHHHPDVESFQAAMQEAGMRIVGVDNIERSVPLEETVLPLNCV 158 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFA 281 +++G E GL P+ + + H+ G +++NV +AAA++++ H A Sbjct: 159 MVMGEESTGLSPEMAAISEEIVHITQYGSTRSMNVGHAAAISMWAWVLQHRA 210 >gi|306834125|ref|ZP_07467245.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338] gi|304423698|gb|EFM26844.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338] Length = 181 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 51/166 (30%), Gaps = 5/166 (3%) Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + L + +++ P N G I R+ A + I P + Sbjct: 1 MNIEELDYHEEPNKATNHIVLF--QPQIPQNTGNIARTCAATNAPLHIIRPMGFPIDDRK 58 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + ++ E + +L + ++K ++ + G Sbjct: 59 MKRAGLDYWEKLDVTFYDSLDEFMEKCDGEVHLISKFANKVYSDENYND-GKHHYFLFGR 117 Query: 236 EGKGLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 E KGL + + + M +++LN+SN + +Y Sbjct: 118 EDKGLPEEFMRANPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQ 163 >gi|299136114|ref|ZP_07029298.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8] gi|298602238|gb|EFI58392.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8] Length = 270 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHM--PGIIK--ALNVSNAAAVALYITQN 278 ++AL+ G+E GL + + + + M P + ++N+ + AV LY Sbjct: 130 PQQVALLFGSEKTGLTNEQLSHCSLLTTIPMFAPEAARHLSMNLGQSVAVCLYELTR 186 >gi|308235365|ref|ZP_07666102.1| putative RNA methyltransferase, TrmH family, group 2 [Gardnerella vaginalis ATCC 14018] gi|311115095|ref|YP_003986316.1| TrmH family RNA methyltransferase [Gardnerella vaginalis ATCC 14019] gi|310946589|gb|ADP39293.1| TrmH family RNA methyltransferase [Gardnerella vaginalis ATCC 14019] Length = 227 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 43/149 (28%), Gaps = 6/149 (4%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + P N G+ +R + + L ++ H + + Sbjct: 75 LCFYSPRIPGNTGSAIRLCAVTGTILHLVEPLGFNLQDTKLRRAGLDY--HDMAHVVMHP 132 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP--KTQE--TATSM 251 + I ++++ K L+ G E + Sbjct: 133 NFENLVESMPNSRIIAFTANATKLYTDIEYKPNDILLFGPEPGDIPDPMDIMAGPHVAEQ 192 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M +++LN++N A++A+Y Sbjct: 193 VRLPMRPSLRSLNLTNCASIAIYEAWRQL 221 >gi|152978538|ref|YP_001344167.1| RNA methyltransferase [Actinobacillus succinogenes 130Z] gi|150840261|gb|ABR74232.1| RNA methyltransferase, TrmH family, group 1 [Actinobacillus succinogenes 130Z] Length = 249 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K +IA++ G E GL ++ +LN++ A + Y + Sbjct: 106 KCGQIAIVFGRERVGLTNDELLKCRYHLNIPANPDYSSLNLAMAVQLVCYELR 158 >gi|295132643|ref|YP_003583319.1| tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] gi|294980658|gb|ADF51123.1| tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] Length = 150 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 53/153 (34%), Gaps = 7/153 (4%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 +D + + + + P N+G + RSA I T ++ A Sbjct: 1 MKVDNLEQGFFGIGIQNGKTPENLGVLWRSAQNMGASFIFTIGNRYAKQACDTH----KA 56 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + +PY N D + + +PLE + +LGAE GL + Sbjct: 57 VGAMPYFHYENFKDFYAHLPKGAMLVGVELDEGAEPLETFKHPRRCVYLLGAEDHGLSKQ 116 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 E + + +LNVS A ++ +Y Sbjct: 117 AIEKSHFLVK---FKSTLSLNVSVAGSIIMYDR 146 >gi|256846965|ref|ZP_05552411.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] gi|256715629|gb|EEU30604.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] Length = 169 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 47/151 (31%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + ++ + ++ + + + Sbjct: 1 MTNHIVLFEPLFPANTGNIARTCAGTNTVLHLIKPLGFSTDDKHMRRAGLDYWDKVKVVY 60 Query: 192 ISN-LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETAT 249 + + + + ++ + G E GL ++ Sbjct: 61 HDDLPSFIQTVPDLKHLYIVSKFATRDYTDVDYTESGDHYFLFGKETTGLPEPFMRKYPE 120 Query: 250 SMAHLHMPG-IIKALNVSNAAAVALYITQNH 279 + I+ALN+SN+AA+ +Y Sbjct: 121 LAIRIPQNDQNIRALNLSNSAAIIIYEALRQ 151 >gi|325695061|gb|EGD36964.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK150] Length = 167 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250 +L D +++M + ++ E + G E KGL + Sbjct: 61 YDSLEDFMEQMDGRLYLIS-KFAEKVYSEEYFAAEGSHYFMFGREDKGLPEEFMRCHPEK 119 Query: 251 MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 151 >gi|320547370|ref|ZP_08041659.1| RNA methyltransferase [Streptococcus equinus ATCC 9812] gi|320447966|gb|EFW88720.1| RNA methyltransferase [Streptococcus equinus ATCC 9812] Length = 190 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + ++ Sbjct: 28 VVLFQPQIPQNTGNIARTCAATNTPLHIIRPMGFPIDDRKMKRAGLDYWDKLDVTFYDSI 87 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 + ++K + + G E KGL +E + Sbjct: 88 EEFMEKCDGQVHLISKFAEKVYSDENYND-GKYHYFLFGREDKGLPEAFMRENPEKALRI 146 Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279 M +++LN+SN + +Y Sbjct: 147 PMNDEHVRSLNLSNTVCMIVYEALRQ 172 >gi|226289866|gb|EEH45350.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb18] Length = 565 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 9/55 (16%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSNAAAVAL 273 L+LG+E +GL ++ A + + +LNVS A+A+ Sbjct: 471 PCVLMLGSEEQGLPRSIRQQADGAVVIPGAITASNVEDRAGVDSLNVSVASALLC 525 >gi|295660999|ref|XP_002791055.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb01] gi|226280982|gb|EEH36548.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb01] Length = 623 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 9/55 (16%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSNAAAVAL 273 L+LG+E +GL ++ A + + +LNVS A+A+ Sbjct: 529 PCVLMLGSEEQGLPRSIRQQADGAVVIPGAITASNVEDRAGVDSLNVSVASALLC 583 Score = 37.5 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 19/98 (19%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATK---------------NALARLDWDANLPHPFP 92 + F+YG V AAL RK+++L + + L Sbjct: 263 SEFIYGASAVLAALRCGRRKLYKLYIYETPDKVSLRLGRNPTREPMFDTIIKFGLAAGVC 322 Query: 93 VKTVP---PQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 VK V P+ +DK+ G H G LE + L +D Sbjct: 323 VKQVAGNWPKLLDKMSG-GRPHNGCILEASQLPKLPVD 359 >gi|225682465|gb|EEH20749.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb03] Length = 565 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 9/55 (16%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSNAAAVAL 273 L+LG+E +GL ++ A + + +LNVS A+A+ Sbjct: 471 PCVLMLGSEEQGLPRSIRQQADGAVVIPGAITASNVEDRAGVDSLNVSVASALLC 525 >gi|125718574|ref|YP_001035707.1| rRNA methylase [Streptococcus sanguinis SK36] gi|125498491|gb|ABN45157.1| RRNA methylase, putative [Streptococcus sanguinis SK36] Length = 184 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 3/169 (1%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L T + + +VL P N G I R+ A + I P + Sbjct: 1 MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDR 60 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + ++ + + +L D +++M + ++ E + G Sbjct: 61 KMKRAGLDYWDKLDITYYESLDDFMEQMDGQLYLIS-KFAEKVYSEENFAAEGSHYFMFG 119 Query: 235 AEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 E KGL + + + M +++LNVSN + +Y Sbjct: 120 REDKGLPEEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168 >gi|146301635|ref|YP_001196226.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] gi|146156053|gb|ABQ06907.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] Length = 152 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 5/60 (8%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + +LGAE GL K + + K+LNV+ A V +Y + +K Sbjct: 95 FEHPRRCVYLLGAEDHGLSKKAMDKCHHLVK---FKSEKSLNVAVAGTVVMYD--RNLSK 149 >gi|325687110|gb|EGD29133.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK72] Length = 167 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L D +++M + ++ E + G E KGL + + Sbjct: 61 YESLDDFMEQMEGRLYLIS-KFAEKVYSEENFAAEGSHYFMFGREDKGLPEEFMRRHPEK 119 Query: 251 MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 151 >gi|305663452|ref|YP_003859740.1| tRNA/rRNA methyltransferase (SpoU) [Ignisphaera aggregans DSM 17230] gi|304378021|gb|ADM27860.1| tRNA/rRNA methyltransferase (SpoU) [Ignisphaera aggregans DSM 17230] Length = 237 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 24/54 (44%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 IA++ G E GL + + H+ LN+S+A A+ LY+ K Sbjct: 110 IAVVFGRESVGLTREEISKCDFLVHIASNPEYPVLNLSHAVAITLYMLYKVLRK 163 >gi|288931197|ref|YP_003435257.1| RNA methyltransferase, TrmH family, group 1 [Ferroglobus placidus DSM 10642] gi|288893445|gb|ADC64982.1| RNA methyltransferase, TrmH family, group 1 [Ferroglobus placidus DSM 10642] Length = 230 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 26/69 (37%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +E+ + A++ G E GL + + + + +NVS+AA Sbjct: 85 YIRRPYYTPEELREMIKGETAILFGREDYGLYDEELKLCNVIVSVPTSEEYPVMNVSHAA 144 Query: 270 AVALYITQN 278 AV LY Sbjct: 145 AVILYELSK 153 >gi|226227447|ref|YP_002761553.1| putative methyltransferase [Gemmatimonas aurantiaca T-27] gi|226090638|dbj|BAH39083.1| putative methyltransferase [Gemmatimonas aurantiaca T-27] Length = 283 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++A++ G E GL + + + ++ + +LNV+ A +ALY Sbjct: 110 QGRVAIMFGREDHGLPNEALDRSNAICTIPTTEHF-SLNVAQACLLALYEL 159 >gi|227544885|ref|ZP_03974934.1| SpoU family RNA methyltransferase [Lactobacillus reuteri CF48-3A] gi|300909895|ref|ZP_07127355.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112] gi|227185159|gb|EEI65230.1| SpoU family RNA methyltransferase [Lactobacillus reuteri CF48-3A] gi|300892543|gb|EFK85903.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112] Length = 169 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 52/151 (34%), Gaps = 3/151 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + + ++ + ++ + + Sbjct: 1 MTNHIVLFEPLFPANTGNIARTCAGTNTELHLIKPLGFSTDDKHMKRAGLDYWDKVKITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQ-ETAT 249 +L ++ + I + + + + + G E GL + + Sbjct: 61 HEDLPSFMKTIPDINRLYIVSKFATHDYSDVDYTGEGDHYFLFGKETTGLPERFMQKYPE 120 Query: 250 SMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + + I+ALN+SN+AA+ +Y Sbjct: 121 NAIRIPQNDNNIRALNLSNSAAIVIYEVLRQ 151 >gi|315657840|ref|ZP_07910720.1| rRNA methylase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491637|gb|EFU81248.1| rRNA methylase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 230 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 27/54 (50%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ G E +GL P Q + + G ++LNV +AAA++++ + Sbjct: 168 LPSRTLMVFGEESQGLTPAMQNALERLVQITQYGSTRSLNVGHAAAISIWAWRR 221 >gi|304390649|ref|ZP_07372602.1| rRNA methylase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326405|gb|EFL93650.1| rRNA methylase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 230 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 27/54 (50%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ G E +GL P Q + + G ++LNV +AAA++++ + Sbjct: 168 LPSRTLMVFGEESQGLTPAMQNALERLVQITQYGSTRSLNVGHAAAISIWAWRR 221 >gi|256825068|ref|YP_003149028.1| rRNA methylase [Kytococcus sedentarius DSM 20547] gi|256688461|gb|ACV06263.1| rRNA methylase [Kytococcus sedentarius DSM 20547] Length = 229 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 72/226 (31%), Gaps = 6/226 (2%) Query: 58 SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLA 115 L + T++ L R L PV V + + + +A Sbjct: 2 RELLRWQPELADDVFVTRDFLDRSPEFVELVAETPVHAHLVSDAVVRVVADADTPPGIVA 61 Query: 116 LETAPL--LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + L+ L + VL V DP N+G ++R+A A ++ S + Sbjct: 62 VARWQPADLADCLGRLGPQGFGAVLSEVRDPGNLGTVIRAADAAGAAFVVV-TDASVDVT 120 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 ++ H + L+ + + + L + + + Sbjct: 121 NPKVVRSTAGSLHHIDVVTGIAFPDLRAATGGTVRLVAADGYASTQLPEADLDGPHLWVF 180 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQN 278 G E +GL + + + G ++LN+ AAAV LY Sbjct: 181 GNEARGLPDDQVAACDAAVAVPLHGRAESLNLGTAAAVCLYASAMR 226 >gi|298345662|ref|YP_003718349.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|298235723|gb|ADI66855.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] Length = 198 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 27/54 (50%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ G E +GL P Q + + G ++LNV +AAA++++ + Sbjct: 136 LPSRTLMVFGEESQGLTPAMQNALERLVQITQYGSTRSLNVGHAAAISIWAWRR 189 >gi|325475311|gb|EGC78496.1| TrmH family RNA methyltransferase [Treponema denticola F0402] Length = 262 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGIIKALNVSNAAAVAL 273 K +++G+E G+ P+ + A + M GI ++NVS A + + Sbjct: 201 FDFPKKGIVVIGSEELGVSPEAVKKAQGRVITIPMYGIKASINVSVAFGICM 252 >gi|54027361|ref|YP_121603.1| putative RNA methyltransferase [Nocardia farcinica IFM 10152] gi|54018869|dbj|BAD60239.1| putative RNA methyltransferase [Nocardia farcinica IFM 10152] Length = 235 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 23/54 (42%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L+ G EG G+ ++ A + G +++N AA +A++ Sbjct: 173 LPRECLLLFGQEGPGVTEPAKQAAAMTVSIAQFGSTRSINAGVAAGIAMHAWIR 226 >gi|213618929|ref|ZP_03372755.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 54 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 2/45 (4%) Query: 238 KGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 +GL + + M +++N+SNA +V +Y Sbjct: 1 RGLPASILDALPKEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 45 >gi|118594590|ref|ZP_01551937.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1 [Methylophilales bacterium HTCC2181] gi|118440368|gb|EAV46995.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1 [Methylophilales bacterium HTCC2181] Length = 246 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 23/52 (44%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + KI+L+ G E GL + ++ + +LN++ A + + + Sbjct: 112 DQKISLVFGNETNGLSNDEIKHCQLLSFIDANKSYSSLNLAQAVQICCHELR 163 >gi|116754672|ref|YP_843790.1| RNA methyltransferase [Methanosaeta thermophila PT] gi|116666123|gb|ABK15150.1| RNA methyltransferase, TrmH family, group 1 [Methanosaeta thermophila PT] Length = 243 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 23/52 (44%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K+ +AL+LG E GL + + +N+S+AA V LY Sbjct: 109 KDGTVALLLGREDWGLTNDELMACDVLVSIPTSDEYPVMNLSHAATVLLYEL 160 >gi|324991314|gb|EGC23247.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK353] Length = 167 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 3/152 (1%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL P N G I R+ A + I P + + ++ + + Sbjct: 1 MKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLKITY 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250 +L D +++M + ++ E + G E KGL + + Sbjct: 61 YESLDDFMEQMDGRLYLIS-KFAEKVYSEENFEAEGSHYFMFGREDKGLPEEFMRRHPEK 119 Query: 251 MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 + M +++LNVSN + +Y Sbjct: 120 ALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 151 >gi|289668561|ref|ZP_06489636.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 108 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277 ++ ++GAE +G+ + G +++LNV++A AV A + + Sbjct: 48 LPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 102 >gi|289665109|ref|ZP_06486690.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 197 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277 ++ ++GAE +G+ + G +++LNV++A AV A + + Sbjct: 137 LPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 191 >gi|288905984|ref|YP_003431206.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus UCN34] gi|288732710|emb|CBI14284.1| putative RNA methyltransferase, TrmH family [Streptococcus gallolyticus UCN34] Length = 181 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 51/166 (30%), Gaps = 5/166 (3%) Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175 + L + +++ P N G I R+ A + I P + Sbjct: 1 MNIEELNYHEEPNKATNHIVLF--QPQIPQNTGNIARTCAATNAPLHIIRPMGFPIDDRK 58 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 + ++ + + +L + ++K ++ + G Sbjct: 59 MKRAGLDYWDKLDVTFYDSLDEFMEKCDGEVHLISKFANKVYSDENYND-GKHHYFLFGR 117 Query: 236 EGKGLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 E KGL + + + M +++LN+SN + +Y Sbjct: 118 EDKGLPEEFMRANPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQ 163 >gi|149908845|ref|ZP_01897505.1| RRNA methylase, SpoU family [Moritella sp. PE36] gi|149808119|gb|EDM68060.1| RRNA methylase, SpoU family [Moritella sp. PE36] Length = 238 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +AL+ G E GL + + T + +LN++ A + Y T+ Sbjct: 106 NYPVALVFGRERIGLTNEELQKCTYHVCVAANPEYSSLNLAMAVQILTYETR 157 >gi|261417472|ref|YP_003251155.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373928|gb|ACX76673.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327174|gb|ADL26375.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 269 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 48/155 (30%), Gaps = 5/155 (3%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAV----AFSCDGIITTKRYSPSESAVLAKSASGA 183 + +L+ +H ++ + + S +A A Sbjct: 1 MRKFRVVLVEPEHPHNVGFVARAMHCYALPELYIVYPKRDKVLDKSYHTAANSHDILDNA 60 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + F + + + + ++ IAL+ G E GL + Sbjct: 61 KVVHKFEDAIGDCSCAVAYSRRIFASSIKHTMVQNLSDMLPEDGTIALVFGRESCGLALE 120 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 T + +PG++ +LN+ A +++LY Sbjct: 121 EVNACTYQCEIPVPGLM-SLNLGQAVSISLYELCR 154 >gi|329115715|ref|ZP_08244432.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus parauberis NCFD 2020] gi|326906120|gb|EGE53034.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus parauberis NCFD 2020] Length = 181 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + +L Sbjct: 19 VVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDVRFYDSL 78 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 D L K+ + + I G E KGL + +E + + Sbjct: 79 DDFLGKVDGQIHLISKFAEKVYSDHNYDDGQAH-YFIFGREDKGLPEEFMREHSEKALRI 137 Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279 M +++LN+SN + +Y Sbjct: 138 PMNDEHVRSLNLSNTVCMIVYEALKQ 163 >gi|325579031|ref|ZP_08148987.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus parainfluenzae ATCC 33392] gi|325159266|gb|EGC71400.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus parainfluenzae ATCC 33392] Length = 239 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++A++ G E GL + ++ +LN++ A + Y + Sbjct: 103 QGQVAIVFGRERVGLTNEELLKCHYHLNIPANPEYSSLNLAMAVQLVSYEMR 154 >gi|42525569|ref|NP_970667.1| RNA methyltransferase [Treponema denticola ATCC 35405] gi|41815580|gb|AAS10548.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405] Length = 262 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGIIKALNVSNAAAVAL 273 K +++G+E G+ P+ + A + M GI ++NVS A + + Sbjct: 201 FEFPKKGIVVIGSEELGVSPEAVKKAQGRVITIPMYGIKASINVSVAFGICM 252 >gi|7507813|pir||T28895 hypothetical protein T14B4.1 - Caenorhabditis elegans Length = 1203 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 22/55 (40%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + K +++G E +G+ + G ++LNV AA+ + Sbjct: 1137 MMHDFVFPKKAVIVMGDEKEGVPVNLLRAVDQTVEIKQVGHTRSLNVHVTAALMI 1191 >gi|57641905|ref|YP_184383.1| TrmH family tRNA methyltransferase [Thermococcus kodakarensis KOD1] gi|3253066|dbj|BAA29043.1| spoU [Pyrococcus sp.] gi|57160229|dbj|BAD86159.1| probable tRNA/rRNA methyltransferase, SpoU family [Thermococcus kodakarensis KOD1] Length = 235 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 21/56 (37%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ + G E GL+ + + + +N++ AAAV LY Sbjct: 101 YPGEVGIFFGRESIGLKNEELDAMDVTLTIPTSEEYPVMNLAQAAAVVLYELSKKR 156 >gi|255089483|ref|XP_002506663.1| predicted protein [Micromonas sp. RCC299] gi|226521936|gb|ACO67921.1| predicted protein [Micromonas sp. RCC299] Length = 247 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 13/101 (12%), Positives = 32/101 (31%), Gaps = 4/101 (3%) Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + + + + G ++ E+ L+ GAE GL Sbjct: 125 CVRVHDDWDAFHAYWRDALGAPGRLVAFSKFGARPHAEEGAYRSGDWLLFGAETTGLPGA 184 Query: 244 TQETATS---MAHLHMPGI-IKALNVSNAAAVALYITQNHF 280 + + + + +++LN++ +A V +Y Sbjct: 185 AHDACADSGGIRRIPIDETHVRSLNLAVSAGVGVYEALRQI 225 >gi|116334061|ref|YP_795588.1| rRNA methylase (SpoU class) [Lactobacillus brevis ATCC 367] gi|116099408|gb|ABJ64557.1| Predicted rRNA methylase (SpoU class) [Lactobacillus brevis ATCC 367] Length = 170 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 231 LILGAEGKGLRP-KTQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279 + G E GL ++ A + I+ALN+SN+AA+ +Y Sbjct: 102 FLFGKETTGLPEPFMRQHAEKCIRIPQDDTHIRALNLSNSAAIVIYEVLRQ 152 >gi|149371529|ref|ZP_01890945.1| hypothetical protein SCB49_09000 [unidentified eubacterium SCB49] gi|149355156|gb|EDM43716.1| hypothetical protein SCB49_09000 [unidentified eubacterium SCB49] Length = 153 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 58/156 (37%), Gaps = 7/156 (4%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 D + + + + P N+GA+ R+A I T + ++++ A Sbjct: 1 MQPDNFTTTYFGIGIMNGKTPANLGALWRTAQNMGASYIFTIGKRYANQASDTH----NA 56 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 ++ +PY + D + + D + LE + +LGAE GL + Sbjct: 57 VKSMPYFHYKSFDDFFEHLPKGVRIVGVEKDDRAENLEDFNHPRRCVYLLGAEDHGLTKE 116 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + + +LNV+ A ++ LY + Sbjct: 117 AIDKSHFLV---QFKSEFSLNVAIAGSIVLYDRSRN 149 >gi|82538817|ref|XP_723834.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23478269|gb|EAA15399.1| hypothetical protein [Plasmodium yoelii yoelii] Length = 339 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 76/244 (31%), Gaps = 6/244 (2%) Query: 7 KKSEKIFSLK----DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 K+ +KI +K ++ Y + + + K + +KS + F+ G T+ Sbjct: 90 KEQKKIDYIKKNGENNEYLSISKRSKLMKYIIRLRKKSNFRKKNNAFFVKGTQTIINLSK 149 Query: 63 NPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121 + + + +L+ + + N + + +D + + + Sbjct: 150 DHNLTMEVILSNSKPFLKYFQNKCNKLYYVNNDILNYIFLDSLKFMKDKNYDSVAIVKIP 209 Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181 + + L+ LD + +N+G IL A + + D I + + Sbjct: 210 NIENTKTEKKIKFLLALDRIRYAYNLGKILNIAYSMNIDSIFYIHNTVDPYNHNVMDITK 269 Query: 182 GALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 G IPY S + + + + N I ILG E G Sbjct: 270 GKHLFIPYNVGSYNELNKFCEQNNLVPIVAHTNGMDPQSFXKNXTNQGICFILGNESYGP 329 Query: 241 RPKT 244 Sbjct: 330 HKDI 333 >gi|332367413|gb|EGJ45146.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1059] Length = 184 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 3/169 (1%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L T + + +VL P N G I R+ A + I P + Sbjct: 1 MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDR 60 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + ++ + + +L D +++M + ++ E + G Sbjct: 61 KMKRAGLDYWDKLDITYYESLDDFMEQMDGKLYLIS-KFAEKVYSEEYFAAEGSHYFMFG 119 Query: 235 AEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 E KGL + + + M +++LNVSN + +Y Sbjct: 120 REDKGLPEEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168 >gi|312136457|ref|YP_004003794.1| RNA methyltransferase, trmh family, group 1 [Methanothermus fervidus DSM 2088] gi|311224176|gb|ADP77032.1| RNA methyltransferase, TrmH family, group 1 [Methanothermus fervidus DSM 2088] Length = 231 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 A++ G E GL + + +NVS+AAAV Y Sbjct: 105 QKNTAILFGREDHGLYSHELRMCDLILTIPTSKEYPIMNVSHAAAVIFYELFK 157 >gi|194477215|ref|YP_002049394.1| probable tRNA/rRNA methyltransferase [Paulinella chromatophora] gi|171192222|gb|ACB43184.1| probable tRNA/rRNA methyltransferase [Paulinella chromatophora] Length = 255 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + AL+ G E +GL A + L ++N+S+A A+ LY + Sbjct: 109 DGPSALVFGREDRGLSNNELLLAGKVLKLITSPQYTSINLSHAVAIILYELEKIRN 164 >gi|193204953|ref|NP_495375.3| hypothetical protein T14B4.1 [Caenorhabditis elegans] gi|169404471|gb|AAK31550.3| Hypothetical protein T14B4.1 [Caenorhabditis elegans] Length = 1225 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 22/55 (40%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + + K +++G E +G+ + G ++LNV AA+ + Sbjct: 1159 MMHDFVFPKKAVIVMGDEKEGVPVNLLRAVDQTVEIKQVGHTRSLNVHVTAALMI 1213 >gi|240102381|ref|YP_002958690.1| RNA methyltransferase (spoU/TrmH) [Thermococcus gammatolerans EJ3] gi|239909935|gb|ACS32826.1| RNA methyltransferase (spoU/TrmH) [Thermococcus gammatolerans EJ3] Length = 243 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ L G E GL+ + E + + +N++ A AV LY Sbjct: 111 YTGEVGLFFGRESIGLKNEELERLDLIVTIPTSEDYPVMNLAQAVAVILYELSKTR 166 >gi|304321241|ref|YP_003854884.1| hypothetical protein PB2503_08434 [Parvularcula bermudensis HTCC2503] gi|303300143|gb|ADM09742.1| hypothetical protein PB2503_08434 [Parvularcula bermudensis HTCC2503] Length = 293 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ A++ GAE GL + A ++ + + +LN++ A V Y Sbjct: 143 ERTAILFGAEKAGLETEEVAHAHALVTIPVNPAFPSLNLAQAVLVVAYEWAQ 194 >gi|330835848|ref|YP_004410576.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera cuprina Ar-4] gi|329567987|gb|AEB96092.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera cuprina Ar-4] Length = 232 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 19/48 (39%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+ G E GL + M + LN+S+A ++ LY Sbjct: 106 LVFGRESVGLTREEIAMTDIMVFIPANRDYPVLNLSHAVSIILYELWK 153 >gi|218509319|ref|ZP_03507197.1| probable RNA methylase protein [Rhizobium etli Brasil 5] Length = 83 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++AL++G EG+GL A + + +LN + A +AL+ Sbjct: 29 RMALVVGTEGEGLPEALLARF-QSARIPQSDELDSLNAATATGIALF 74 >gi|332298868|ref|YP_004440790.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM 12168] gi|332181971|gb|AEE17659.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM 12168] Length = 251 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 16/46 (34%) Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 G E GL + T + +LN+S+A + Y Sbjct: 113 FGNERTGLTDEELAECTVGVTIPSHESFASLNLSHAVQIICYTLFR 158 >gi|315654256|ref|ZP_07907164.1| rRNA methylase [Mobiluncus curtisii ATCC 51333] gi|315491291|gb|EFU80908.1| rRNA methylase [Mobiluncus curtisii ATCC 51333] Length = 230 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ G E +GL P Q + + G ++LNV +AAA+ ++ + Sbjct: 168 LPSRTLMVFGEESQGLTPAMQNALERLVQITQYGSTRSLNVGHAAAIGIWAWRR 221 >gi|313885338|ref|ZP_07819089.1| RNA methyltransferase, TrmH family, group 2 [Eremococcus coleocola ACS-139-V-Col8] gi|312619444|gb|EFR30882.1| RNA methyltransferase, TrmH family, group 2 [Eremococcus coleocola ACS-139-V-Col8] Length = 175 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 4/154 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + + L P N G I R+ A + + ++ +L ++ ++ I Sbjct: 1 MKNHIALYQPLMPANTGNISRTCAASNAPLHLIHPLGFSTDDKMLKRAGLDYWHNVEIIE 60 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--ALILGAEGKGLR-PKTQETA 248 + L + I + +N+ + G E GL E Sbjct: 61 HESFEAFLDYVGQRPMYLISKFAPRIYTEADLARNEADEQFFLFGKETTGLPLEFMLEHK 120 Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281 + M +++LN+SN + L+ Sbjct: 121 QDCLRIPMNDEHVRSLNLSNTVNIVLFEALRQQN 154 >gi|86134818|ref|ZP_01053400.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] gi|85821681|gb|EAQ42828.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] Length = 152 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 48/150 (32%), Gaps = 9/150 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + + P N+G + RSA I T ++ A +PY Sbjct: 9 FFGIGIQNGKTPENLGVLWRSAQNMGASFIFTIGNRYAKQACDTH----KATGAMPYFHY 64 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 N D + + LE + +LGAE G+ E A + Sbjct: 65 KNFDDFFDNLPKGAMLVGVELDEKSVQLETFTHPKRCVYLLGAEDHGIPKLAIEKAHHLV 124 Query: 253 HLHMPGIIK-ALNVSNAAAVALYITQNHFA 281 + +LNV+ A ++ +Y Q Sbjct: 125 K----FKSELSLNVAVAGSIVMYDRQAKLN 150 >gi|313620932|gb|EFR92105.1| RNA methyltransferase, TrmH family, group 3 [Listeria innocua FSL S4-378] Length = 201 Score = 60.2 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 94/203 (46%), Gaps = 13/203 (6%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQ 99 + E ++ G + V L + R I ++ + + + V+ VP Q Sbjct: 2 EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152 I+K+V HQG+A + A LD ++LD + DPHN+G+I+R Sbjct: 61 KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A + GII KR S + +AK+++GA+E++P +R++N+ ++++ G G Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGA 235 + + +A+++G+ Sbjct: 179 DAKGSSDYRTMNVDMPLAIVIGS 201 >gi|255264534|ref|ZP_05343876.1| RNA methyltransferase, TrmH family [Thalassiobium sp. R2A62] gi|255106869|gb|EET49543.1| RNA methyltransferase, TrmH family [Thalassiobium sp. R2A62] Length = 157 Score = 60.2 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 2/152 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + +L MVL P+N GAI RS VA + I+ + + ++ + +H+ Sbjct: 1 MTKPRLKMVLVTPEIPYNTGAIGRSCVALGLELILIKPYGFSLDEKSVRRAGTDYWKHVD 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-T 247 + D L+ Q D + + L+ G E GL + Sbjct: 61 LSEYDSWADFLETRQPPRDQMYFFEEDGAQSFYAPEYHPDGYLVFGCESAGLPASVLDGM 120 Query: 248 ATSMAHLHMPG-IIKALNVSNAAAVALYITQN 278 M HL M +++LN++N A A+Y Sbjct: 121 EDRMFHLPMLDTRVRSLNLANVATAAIYQAMR 152 >gi|187251770|ref|YP_001876252.1| tRNA/rRNA methyltransferase [Elusimicrobium minutum Pei191] gi|186971930|gb|ACC98915.1| tRNA/rRNA methyltransferase [Elusimicrobium minutum Pei191] Length = 225 Score = 60.2 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + IK KIA++ G+E GL K E ++ ++ ++N++ A + Y T Sbjct: 91 PNINNHIKRGKIAVVFGSEKTGLSVKDIELCDAVLNIPTTTKQPSVNLAQAVNLVCYETA 150 Query: 278 N 278 Sbjct: 151 K 151 >gi|324993671|gb|EGC25590.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK405] gi|324995017|gb|EGC26930.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK678] gi|325696341|gb|EGD38232.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK160] gi|327462940|gb|EGF09261.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1] Length = 184 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 3/169 (1%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L T + + +VL P N G I R+ A + I P + Sbjct: 1 MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDR 60 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + ++ + + +L D +++M + ++ E + G Sbjct: 61 KMKRAGLDYWDKLDITYYESLDDFMEQMDGRLYLIS-KFAEKVYSEENFAAEGSHYFMFG 119 Query: 235 AEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 E KGL + + + M +++LNVSN + +Y Sbjct: 120 REDKGLPEEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168 >gi|206889201|ref|YP_002249465.1| RNA methyltransferase, TrmH family, group 1 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741139|gb|ACI20196.1| RNA methyltransferase, TrmH family, group 1 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 252 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 N+K+A++ G E KGL + E + + + +LN++ A + Y Sbjct: 112 NNKVAILFGREDKGLFNEEVEKCGYLITIPTSLLQPSLNLAQAVLIVAYELMR 164 >gi|289583255|ref|YP_003481721.1| RNA methyltransferase, TrmH family, group 1 [Natrialba magadii ATCC 43099] gi|289532808|gb|ADD07159.1| RNA methyltransferase, TrmH family, group 1 [Natrialba magadii ATCC 43099] Length = 263 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + + + LN+ AA + LY + Sbjct: 130 PTALVFGRERVGLTNEELAHIDEICAIPASEEYPVLNLGQAATITLYELR 179 >gi|261867060|ref|YP_003254982.1| ATP-dependent RNA helicase SrmB [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412392|gb|ACX81763.1| ATP-dependent RNA helicase SrmB [Aggregatibacter actinomycetemcomitans D11S-1] Length = 358 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 84/262 (32%), Gaps = 22/262 (8%) Query: 26 NHRDYKKMQSFNQK-----SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 + KK + + ++ ++ +YG + A I +L A + Sbjct: 99 DKPREKKTGPLSPRAPEKIKKNRAEEMK--VYGENACLALFEQRPASIVRLWAKVQMAHK 156 Query: 81 LDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL----DAVRNSQLL 135 + + L V + V H G+ + TL D L Sbjct: 157 IGDICSYLAANKKVYHIVESDELTKVSGTEHHGGICMLVKKSYPFTLQGYLDVPHQEDCL 216 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD VN+ NIG ILR+ F ++ + S + + L + GA + Sbjct: 217 VLLDGVNNAQNIGGILRTCAFFGVKNMVLEEAESLNSAVTLRVAEGGAEYVRVLETDDSR 276 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL- 254 Q H+ + + L++ +K +L +G E + L Sbjct: 277 NALAQLRHAGYQIIHVSNDKNSTALDKVRLKNKTVFVL---SEGSTETLAEKSDEQVRLS 333 Query: 255 ---HMPGIIKALNVSNAAAVAL 273 + LNVS A + L Sbjct: 334 FGNPLKNG---LNVSVNAGILL 352 >gi|149237384|ref|XP_001524569.1| hypothetical protein LELG_04541 [Lodderomyces elongisporus NRRL YB-4239] gi|146452104|gb|EDK46360.1| hypothetical protein LELG_04541 [Lodderomyces elongisporus NRRL YB-4239] Length = 934 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 25/206 (12%), Positives = 63/206 (30%), Gaps = 4/206 (1%) Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137 + L + + P+ + + G + +P + L+V Sbjct: 727 IGETQDINKLRETYKRHIITPEQVVEQASPLQTKSGAWNSVMNIDNPRSAKDLSRSDLIV 786 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 + + D + G++T ++ A A + +P + Sbjct: 787 VASLVDKPPNLGGICRLSDVLGVGLLTIHDMEVAKHPQFKNVAVTADQWMPMHEVKPEEI 846 Query: 198 ALQKMHSWGFQTI----GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + + S + + K ++LG E +G+ + Sbjct: 847 KNYLLEKKRDGYTLIGLEQTDKSVQLNKNLEFPKKSLILLGKEKEGIPGELLAELDFCVE 906 Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279 + GII+++N+ AAA+ ++ + Sbjct: 907 IKQVGIIRSMNIQTAAAIIVHAYSSQ 932 >gi|330826303|ref|YP_004389606.1| TrmH family RNA methyltransferase [Alicycliphilus denitrificans K601] gi|329311675|gb|AEB86090.1| RNA methyltransferase, TrmH family, group 1 [Alicycliphilus denitrificans K601] Length = 270 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 1/51 (1%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +A + G+E G+ + + +LN+ A V Y Sbjct: 138 VAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGAAVQVVAYE-WRQ 187 >gi|323699259|ref|ZP_08111171.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio sp. ND132] gi|323459191|gb|EGB15056.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio desulfuricans ND132] Length = 252 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 23/49 (46%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++A++ G E KGL + + + + +LN++ A V LY Sbjct: 109 GRVAVVFGPEDKGLTNEETSVCSGLVTIPTSREDTSLNLAQAVVVVLYE 157 >gi|313625381|gb|EFR95171.1| RNA methyltransferase, TrmH family, group 3 [Listeria innocua FSL J1-023] Length = 201 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 94/203 (46%), Gaps = 13/203 (6%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQ 99 + E ++ G + V L + R I ++ + + + V+ VP Q Sbjct: 2 EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152 I+K+V HQG+A + A LD ++LD + DPHN+G+I+R Sbjct: 61 KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 +A + GII KR S + +AK+++GA+E++P +R++N+ ++++ G G Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178 Query: 213 SSDSKKPLEQEIKNDKIALILGA 235 + + +A+++G+ Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGS 201 >gi|322508137|gb|ADX03591.1| Putative tRNA/rRNA methyltransferase [Acinetobacter baumannii 1656-2] Length = 271 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA++ G E +GL + A + + LNV+ A V Y + Sbjct: 113 IAIVFGREDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELR 161 >gi|260555311|ref|ZP_05827532.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606] gi|260411853|gb|EEX05150.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606] Length = 279 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA++ G E +GL + A + + LNV+ A V Y + Sbjct: 121 IAIVFGREDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELR 169 >gi|260550634|ref|ZP_05824843.1| RNA methyltransferase [Acinetobacter sp. RUH2624] gi|260406345|gb|EEW99828.1| RNA methyltransferase [Acinetobacter sp. RUH2624] Length = 279 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA++ G E +GL + A + + LNV+ A V Y + Sbjct: 121 IAIVFGREDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELR 169 >gi|184157822|ref|YP_001846161.1| rRNA methylase [Acinetobacter baumannii ACICU] gi|332874635|ref|ZP_08442526.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii 6014059] gi|183209416|gb|ACC56814.1| rRNA methylase [Acinetobacter baumannii ACICU] gi|323517711|gb|ADX92092.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715] gi|332737164|gb|EGJ68100.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii 6014059] Length = 279 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA++ G E +GL + A + + LNV+ A V Y + Sbjct: 121 IAIVFGREDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELR 169 >gi|169633231|ref|YP_001706967.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF] gi|169152023|emb|CAP00898.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii] Length = 279 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA++ G E +GL + A + + LNV+ A V Y + Sbjct: 121 IAIVFGREDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELR 169 >gi|169796249|ref|YP_001714042.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|213157017|ref|YP_002319062.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii AB0057] gi|215483704|ref|YP_002325925.1| RNA methyltransferase, TrmH family, group 1 family protein [Acinetobacter baumannii AB307-0294] gi|239504053|ref|ZP_04663363.1| RNA methyltransferase, TrmH family, group 1 family protein [Acinetobacter baumannii AB900] gi|301347826|ref|ZP_07228567.1| RNA methyltransferase, TrmH family, group 1 family protein [Acinetobacter baumannii AB056] gi|301511110|ref|ZP_07236347.1| RNA methyltransferase, TrmH family, group 1 family protein [Acinetobacter baumannii AB058] gi|301595111|ref|ZP_07240119.1| RNA methyltransferase, TrmH family, group 1 family protein [Acinetobacter baumannii AB059] gi|332855453|ref|ZP_08435873.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii 6013150] gi|332866041|ref|ZP_08436785.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii 6013113] gi|169149176|emb|CAM87055.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|193077116|gb|ABO11892.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] gi|213056177|gb|ACJ41079.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii AB0057] gi|213987649|gb|ACJ57948.1| RNA methyltransferase, TrmH family, group 1 family protein [Acinetobacter baumannii AB307-0294] gi|332727427|gb|EGJ58857.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii 6013150] gi|332734861|gb|EGJ65952.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii 6013113] Length = 279 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA++ G E +GL + A + + LNV+ A V Y + Sbjct: 121 IAIVFGREDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELR 169 >gi|126641510|ref|YP_001084494.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 244 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA++ G E +GL + A + + LNV+ A V Y + Sbjct: 86 IAIVFGREDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELR 134 >gi|323451439|gb|EGB07316.1| hypothetical protein AURANDRAFT_71849 [Aureococcus anophagefferens] Length = 3487 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + D+ LGAE G+ + L + NV+ A A+ +Y + + Sbjct: 808 FVHPDRAVYFLGAEDHGVPKDVLRACRHVVSLPAARSA-SYNVAVAGALVMYDRLSKRNR 866 >gi|328952869|ref|YP_004370203.1| RNA methyltransferase, TrmH family, group 1 [Desulfobacca acetoxidans DSM 11109] gi|328453193|gb|AEB09022.1| RNA methyltransferase, TrmH family, group 1 [Desulfobacca acetoxidans DSM 11109] Length = 276 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279 +++IAL+ G E GL + ++ + ++LN++ A + Y Sbjct: 126 YHNRIALLFGPENWGLTNEELAFCHALVTIPTA-AFRSLNLAQAVLLVAYEIFLARQ 181 >gi|269218069|ref|ZP_06161923.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848 str. F0332] gi|269213004|gb|EEZ79344.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848 str. F0332] Length = 238 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 18/42 (42%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 ++ L+ G E G+ P+ + G +++NV+ Sbjct: 182 LPERCLLVFGQESSGISPELLAACDFAVRIEQYGSTRSMNVA 223 >gi|302877882|ref|YP_003846446.1| RNA methyltransferase, TrmH family, group 1 [Gallionella capsiferriformans ES-2] gi|302580671|gb|ADL54682.1| RNA methyltransferase, TrmH family, group 1 [Gallionella capsiferriformans ES-2] Length = 253 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +AL+ G E GL + A + ++ +LN++ A V Y Sbjct: 114 VALLFGTEMSGLTNEEASRAQMLVNIPANPEFSSLNLAAAVQVISYEL 161 >gi|171780246|ref|ZP_02921150.1| hypothetical protein STRINF_02034 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281594|gb|EDT47029.1| hypothetical protein STRINF_02034 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 181 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + I ++ Sbjct: 19 VVLFQPQIPQNTGNIARTCAATNTPLHIIRPMGFPIDDRKMKRAGLDYWDKLDVIFYDSI 78 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 ++K + N + G E KGL + + Sbjct: 79 EKFMEKCDGKVHLISKFAEKVYSDENYNDGNHH-YFLFGREDKGLPEDFMRANPEKALRI 137 Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279 M +++LN+SN + +Y Sbjct: 138 PMNDEHVRSLNLSNTVCMIVYEALRQ 163 >gi|86131592|ref|ZP_01050190.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|85818037|gb|EAQ39205.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 153 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 50/159 (31%), Gaps = 9/159 (5%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 D N + + + P N+G + RSA I T +++ + S Sbjct: 1 MQPDNFTNEFFGIGIQNGKTPENLGVLWRSAQNLGASFIFTIGNRYAKQASDTHNAVSAM 60 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + + G + + + + +LGAE GL + Sbjct: 61 PYYHYDNFDDFFNHLPKGARIVGVELDERAQPLETFEH----PRRCVYLLGAEDHGLTRE 116 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + + +LNV+ A ++ LY AK Sbjct: 117 AIDRSHFLVK---FSSTLSLNVAVAGSIVLYD--RGLAK 150 >gi|327474543|gb|EGF19948.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK408] Length = 184 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 3/169 (1%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L T + + +VL P N G I R+ A + I P + Sbjct: 1 MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPVDDR 60 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + ++ + + +L D +++M + ++ E + G Sbjct: 61 KMKRAGLDYWDKLDITYYESLEDFMEQMDGRLYLIS-KFAEKVYSEENFAAEGSHYFMFG 119 Query: 235 AEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 E KGL + + + M +++LNVSN + +Y Sbjct: 120 REDKGLPEEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168 >gi|113460445|ref|YP_718507.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT] gi|112822488|gb|ABI24577.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT] Length = 364 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 85/243 (34%), Gaps = 17/243 (6%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPP 98 ++ ++ +YG + + I ++ T ++ + L V V Sbjct: 121 KKNRAEEMK--VYGENACLSLFAQRPESIVRVWTTVEMAHKVGDLFSYLASNKKVYHVVD 178 Query: 99 QTIDKIVGKEAVHQGLALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSA 154 + +V H G+ + TL D L+VL+ V + HNIG I+R+ Sbjct: 179 NSELALVSGTEHHGGICMLVKKRRPFTLHGYLDIPHQKNCLLVLNGVRNAHNIGGIIRTC 238 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 V + ++ + + + G P T ++ + S+ Sbjct: 239 VCYGISAVVIDDVELLHSAVAMRVAEGGMEYIHPLEIDRTETALVKLRQAGYQIVHLSSN 298 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAA 270 K ++Q NDK+A +L +E + A + +L + LNVS A Sbjct: 299 KHAKTIKQLQLNDKVAFVL-SEAD--TESLADKADELINLSLVNPLKHG---LNVSVATG 352 Query: 271 VAL 273 + L Sbjct: 353 ILL 355 >gi|319761837|ref|YP_004125774.1| RNA methyltransferase, trmh family, group 1 [Alicycliphilus denitrificans BC] gi|317116398|gb|ADU98886.1| RNA methyltransferase, TrmH family, group 1 [Alicycliphilus denitrificans BC] Length = 270 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 1/51 (1%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +A + G+E G+ + + +LN+ A V Y Sbjct: 138 VAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGAAVQVIAYE-WRQ 187 >gi|327490101|gb|EGF21889.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1058] Length = 184 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 3/169 (1%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L T + + +VL P N G I R+ A + I P + Sbjct: 1 MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDR 60 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + ++ + + +L + +++M + ++ E + G Sbjct: 61 KMKRAGLDYWDKLNITYYESLDNFMEQMDGRLYLIS-KFAEKVYSEENFEAEGSHYFMFG 119 Query: 235 AEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 E KGL + + + M +++LNVSN + +Y Sbjct: 120 REDKGLPEEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168 >gi|251793410|ref|YP_003008138.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus NJ8700] gi|247534805|gb|ACS98051.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus NJ8700] Length = 355 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 86/278 (30%), Gaps = 24/278 (8%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61 + S + EKI K L KK ++ K +YG + A Sbjct: 89 VKSSQFDEKIKEKK---TGPLSPRAPEKIKKNRAEEIK-----------VYGENACLALF 134 Query: 62 NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 I +L AT ++ + L V + V H G+ + Sbjct: 135 EKRPGSIVRLWATVQMAHKIGDICSYLAANKKVYHIVDSEELTKVSGTEHHGGICMLVKK 194 Query: 121 LLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 TL D + L++LD VN+ NIG ILR+ F IIT S + L Sbjct: 195 SHPFTLQGYLDVPHSEDCLVLLDGVNNAQNIGGILRTCAFFGVKHIITETPESLNSPITL 254 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 + GA + + + L++ +K +L Sbjct: 255 RVAEGGAEYIRVLETADTRHALAALRAADYQIVHIATGKNGTSLDKVRLKNKTVFVL--- 311 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273 +G L +K+ LNV+ A V L Sbjct: 312 SEGSTEDLVNKEDEQVRLSFANPLKSNLNVAVNAGVLL 349 >gi|323351026|ref|ZP_08086683.1| TrmH family RNA methyltransferase [Streptococcus sanguinis VMC66] gi|322122750|gb|EFX94459.1| TrmH family RNA methyltransferase [Streptococcus sanguinis VMC66] Length = 184 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 3/169 (1%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L T + + +VL P N G I R+ A + I P + Sbjct: 1 MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDR 60 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + ++ + + +L D +++M + ++ E + G Sbjct: 61 KMKRAGLDYWDKLDITYYESLEDFMEQMDGRLYLIS-KFAEKVYSEENFAAEGSHYFMFG 119 Query: 235 AEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 E KGL + + + M +++LNVSN + +Y Sbjct: 120 REDKGLPEEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168 >gi|171742258|ref|ZP_02918065.1| hypothetical protein BIFDEN_01364 [Bifidobacterium dentium ATCC 27678] gi|283456632|ref|YP_003361196.1| RNA methyltransferase [Bifidobacterium dentium Bd1] gi|306822199|ref|ZP_07455581.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|309802286|ref|ZP_07696394.1| RNA methyltransferase, TrmH family, group 2 [Bifidobacterium dentium JCVIHMP022] gi|171277872|gb|EDT45533.1| hypothetical protein BIFDEN_01364 [Bifidobacterium dentium ATCC 27678] gi|283103266|gb|ADB10372.1| RNA methyltransferase [Bifidobacterium dentium Bd1] gi|304554581|gb|EFM42486.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|308221169|gb|EFO77473.1| RNA methyltransferase, TrmH family, group 2 [Bifidobacterium dentium JCVIHMP022] Length = 228 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 4/101 (3%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242 H + + + I ++ + K + L+ G E + Sbjct: 123 YHDMAHVVLHPDFDNLVQSMPNSRIIAFTAHATKLYTEIEYKPTDILLFGPEPGDIPDPM 182 Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 L M +++LN++N A++A+Y Sbjct: 183 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 223 >gi|229525392|ref|ZP_04414797.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae bv. albensis VL426] gi|229338973|gb|EEO03990.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae bv. albensis VL426] Length = 244 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + + +LN++ A + Y + Sbjct: 107 QHSVAMVFGRERTGLTNEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158 >gi|332362259|gb|EGJ40059.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1056] Length = 184 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 3/169 (1%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L T + + +VL P N G I R+ A + I P + Sbjct: 1 MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDR 60 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + ++ + + L D +++M + ++ E + G Sbjct: 61 KMKRAGLDYWDKLNITYYERLDDFMEQMDGRLYLIS-KFAEKVYSEENFEAEGSHYFMFG 119 Query: 235 AEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 E KGL + + + M +++LNVSN + +Y Sbjct: 120 REDKGLPEEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168 >gi|116492956|ref|YP_804691.1| rRNA methylase (SpoU class) [Pediococcus pentosaceus ATCC 25745] gi|116103106|gb|ABJ68249.1| Predicted rRNA methylase (SpoU class) [Pediococcus pentosaceus ATCC 25745] Length = 172 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%) Query: 226 NDKIALILGAEGKGLRPKTQETATSM-AHLHMP-GIIKALNVSNAAAVALYITQNH 279 ++ L+ G E GL + I+ALN+SN+AA+ +Y Sbjct: 99 DEDNYLLFGKETTGLPEAFMRQYEECAIRIPQNDENIRALNLSNSAAIVIYEVLRQ 154 >gi|257388813|ref|YP_003178586.1| RNA methyltransferase, TrmH family, group 1 [Halomicrobium mukohataei DSM 12286] gi|257171120|gb|ACV48879.1| RNA methyltransferase, TrmH family, group 1 [Halomicrobium mukohataei DSM 12286] Length = 241 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 20/53 (37%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + A++ G E GL E + + LN+ AA + LY + Sbjct: 107 LDADTAIVFGRERVGLTNDEIERLDQVCSIPASEEYPVLNLGQAATIVLYELR 159 >gi|222110178|ref|YP_002552442.1| TrmH family RNA methyltransferase [Acidovorax ebreus TPSY] gi|221729622|gb|ACM32442.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax ebreus TPSY] Length = 264 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 19/53 (35%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +A + G+E G+ + + +LN+ A V Y + A Sbjct: 128 VAFLFGSERFGMANEDVYRCHVALSIPTNPQFGSLNLGAAVQVIAYEWRQALA 180 >gi|121593461|ref|YP_985357.1| RNA methyltransferase [Acidovorax sp. JS42] gi|120605541|gb|ABM41281.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax sp. JS42] Length = 264 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 19/53 (35%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 +A + G+E G+ + + +LN+ A V Y + A Sbjct: 128 VAFLFGSERFGMANEDVYRCHVALSIPTNPQFGSLNLGAAVQVIAYEWRQALA 180 >gi|317046840|ref|YP_004114488.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b] gi|316948457|gb|ADU67932.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. At-9b] Length = 234 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++IAL+ G E GL + E + + M +LN+ A V Y Sbjct: 103 QWLNRIALVFGREDSGLTNEELEQVDLLTGIPMANDYPSLNLGQAVMVYCYQL 155 >gi|294788626|ref|ZP_06753868.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Simonsiella muelleri ATCC 29453] gi|294483503|gb|EFG31188.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Simonsiella muelleri ATCC 29453] Length = 268 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 17/50 (34%) Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + G E GL + + + +LN++ A V Y + Sbjct: 139 VFGNETFGLSIDEVQHCNRLMTIAGNPNYFSLNLAQAVQVVCYELFSQVN 188 >gi|301061729|ref|ZP_07202470.1| RNA methyltransferase, TrmH family, group 1 [delta proteobacterium NaphS2] gi|300444189|gb|EFK08213.1| RNA methyltransferase, TrmH family, group 1 [delta proteobacterium NaphS2] Length = 253 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 1/48 (2%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +A++ G E +GL ++ + +LN++ A + Y Sbjct: 115 VAILFGPEDRGLSNDQLRFCHTILTVPTA-SFSSLNLAQAVVIVCYEL 161 >gi|154488238|ref|ZP_02029355.1| hypothetical protein BIFADO_01812 [Bifidobacterium adolescentis L2-32] gi|154083389|gb|EDN82434.1| hypothetical protein BIFADO_01812 [Bifidobacterium adolescentis L2-32] Length = 227 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 4/101 (3%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242 H + + + I ++ + K L+ G E + Sbjct: 122 YHDMAHVVLHPNFEDLVESMPDSRIIAFTAHATKLYTDIEYKPTDILLFGPEPGNIPDPM 181 Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 L M +++LN++N A++A+Y Sbjct: 182 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 222 >gi|153824534|ref|ZP_01977201.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2] gi|149741752|gb|EDM55781.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2] Length = 244 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + + +LN++ A + Y + Sbjct: 107 QHSVAMVFGRERTGLTNEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158 >gi|295688613|ref|YP_003592306.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756] gi|295430516|gb|ADG09688.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756] Length = 268 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 23/51 (45%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+ L+ G E GL ++ + + ++LN++ A ++ Y + Sbjct: 119 RKVGLLFGGERAGLETHDIALCQAIVSIPIDERFRSLNLAQAVSINAYEWK 169 >gi|95929545|ref|ZP_01312287.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM 684] gi|95134242|gb|EAT15899.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM 684] Length = 243 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 22/54 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++A + G E +GL + + A + +LN++ A V LY Sbjct: 107 QSRVAFVFGREDRGLTTQEVALCSQAATIETTDETGSLNLAQAVVVTLYELSRR 160 >gi|262402869|ref|ZP_06079430.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC586] gi|297581145|ref|ZP_06943069.1| RNA methyltransferase [Vibrio cholerae RC385] gi|262351651|gb|EEZ00784.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC586] gi|297534461|gb|EFH73298.1| RNA methyltransferase [Vibrio cholerae RC385] Length = 244 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + + +LN++ A + Y + Sbjct: 107 QHSVAMVFGRERTGLTNEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158 >gi|238918601|ref|YP_002932115.1| RNA methyltransferase [Edwardsiella ictaluri 93-146] gi|238868169|gb|ACR67880.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella ictaluri 93-146] Length = 238 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 20/71 (28%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 E++ AL+ G E GL + + M +LN+ Sbjct: 85 FHYYCTPQELCAVLQEKQHWMANCALVFGREDSGLTNDELALVDLLTGVPMAADYPSLNL 144 Query: 266 SNAAAVALYIT 276 A V Y Sbjct: 145 GQAVMVFCYQL 155 >gi|308807789|ref|XP_003081205.1| unnamed protein product [Ostreococcus tauri] gi|116059667|emb|CAL55374.1| unnamed protein product [Ostreococcus tauri] Length = 308 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 43/144 (29%), Gaps = 7/144 (4%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + + + +N+G + R++ R ES + A H Sbjct: 137 FFGIGIYNGKNENNLGTLWRTSYQLGAAYAFVVGRRFKKES------SDTANTHQHIPMY 190 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + + ++ + +PLE +LG+E GL Sbjct: 191 TYEDWNDFRRNTPYGAVLVAVEMGGEPLETFEHPKNCVYVLGSEDTGLNTSMLRACRHHV 250 Query: 253 HLHMPGIIKALNVSNAAAVALYIT 276 L + NV+ A+ +Y Sbjct: 251 ALPATRTA-SYNVAVTGAILMYDR 273 >gi|229513115|ref|ZP_04402581.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TMA 21] gi|229350008|gb|EEO14962.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TMA 21] Length = 244 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + + +LN++ A + Y + Sbjct: 107 QHSVAMVFGRERTGLTNEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158 >gi|320590055|gb|EFX02500.1| RNA methyltransferase [Grosmannia clavigera kw1407] Length = 719 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSNAAAVALYITQN 278 L++G+EG+GL + A + + +LNVS AA + Sbjct: 624 CLLVVGSEGEGLPRTVRRAADVEVAIANRSGSDVVDSLNVSVAAGLLCAAFLR 676 Score = 38.3 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 13/78 (16%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNA-----------LARLDWDANLPHPFPVKTVPP 98 FLYG V AAL + R++++L + A + ++ V Sbjct: 385 FLYGRSVVEAALRSDRRQLYRLYVHRAAAEYGRHSRGRQQDDGIERLAVARGLSIQHVDA 444 Query: 99 --QTIDKIVGKEAVHQGL 114 Q + + K H G Sbjct: 445 RGQRLMDKMSKGRPHNGY 462 >gi|291296222|ref|YP_003507620.1| RNA methyltransferase TrmH family, group 1 [Meiothermus ruber DSM 1279] gi|290471181|gb|ADD28600.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus ruber DSM 1279] Length = 257 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 21/51 (41%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++A++ G E GL + + + + +LN++ A + Y Sbjct: 118 RGRVAVVFGRETSGLTTDEIDLSQLIVRIPTSPRQPSLNLAQAVLLLCYEI 168 >gi|317493377|ref|ZP_07951799.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918770|gb|EFV40107.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 228 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + E++ A++ G E GL + A + + M +LN+ Sbjct: 85 YHYYCSPQELTGILQEKQSWTASCAIVFGREESGLSNEELALADILTGVPMVADYPSLNL 144 Query: 266 SNAAAVALYIT 276 A V Y Sbjct: 145 GQAVMVFCYQL 155 >gi|12045205|ref|NP_073016.1| RNA methyltransferase [Mycoplasma genitalium G37] gi|255660268|ref|ZP_05405677.1| RNA methyltransferase [Mycoplasma genitalium G37] gi|1723153|sp|P47588|TRML_MYCGE RecName: Full=Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase MG346 gi|3844929|gb|AAC71571.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma genitalium G37] gi|166078946|gb|ABY79564.1| RNA methyltransferase, TrmH family, group 2 [synthetic Mycoplasma genitalium JCVI-1.0] Length = 166 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 47/148 (31%), Gaps = 4/148 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P+N G I+RS AF + + + ++ + I + Sbjct: 8 IVLFCPEIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKIQLFEHKSW 67 Query: 196 TDALQKMHSWGFQT---IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251 LQ + +++ + G E KGL + Sbjct: 68 EHFLQATTENKTIWLLTKSGDKTPDQICMTNKLPNELYFVFGQETKGLPKTIMDNFKQNQ 127 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279 + + ++++N++NA LY Sbjct: 128 IRIPIWNSVRSINLANAVVCILYEYSKQ 155 >gi|297184407|gb|ADI20523.1| predicted rRNA methylase (spou class) [uncultured alpha proteobacterium EB080_L58F04] Length = 154 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 4/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL PHN GAI R+ VA + + I+ + ++ + +H+ + Sbjct: 7 IVLVAPEIPHNTGAIGRTCVALNLELILIKPYGFSLSEKTVIRAGTRYWKHVRLCEYEDW 66 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT-QETATSMAHL 254 L+ ++ + D L+ G E GL + + H+ Sbjct: 67 QSFLEDRQPAQDDLYLFEEHGQQSFYAPVYKDDGYLVFGCESTGLPSEVMLGREDRIFHV 126 Query: 255 HMPGI-IKALNVS-NAAAVALYITQN 278 M +K+LN+S A AV Y Sbjct: 127 PMRNPVVKSLNLSNVATAVI-YQAMR 151 >gi|254460272|ref|ZP_05073688.1| tRNA/rRNA methyltransferase [Rhodobacterales bacterium HTCC2083] gi|206676861|gb|EDZ41348.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium HTCC2083] Length = 157 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 57/155 (36%), Gaps = 3/155 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + ++ +VL P N GAI R+ VA + + I+ + + ++ + +H+ Sbjct: 1 MPTPRMKIVLVTPEIPWNTGAIGRTCVALNLELILIKPLGFSLDEKSVRRAGTDYWKHVN 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-T 247 + ++ Q + L + + L+ G E GL + Sbjct: 61 LTLYDDWVAFIEARKPTRDQLYFFEEHGAQSLYEPDYDPDGYLVFGCESAGLPKSLLDGL 120 Query: 248 ATSMAHLHM-PGIIKALNVS-NAAAVALYITQNHF 280 + HL M +++LN++ A AV + Sbjct: 121 EDRVFHLPMLSDKVRSLNLANVATAVIFQAMKPQL 155 >gi|119026340|ref|YP_910185.1| RNA methyltransferase [Bifidobacterium adolescentis ATCC 15703] gi|118765924|dbj|BAF40103.1| probable RNA methyltransferase [Bifidobacterium adolescentis ATCC 15703] Length = 169 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 4/101 (3%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242 H + + + I ++ + K L+ G E + Sbjct: 64 YHDMAHVVLHPNFEDLVESMPDSRIIAFTAHATKLYTDIEYRPTDILLFGPEPGNIPDPM 123 Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 L M +++LN++N A++A+Y Sbjct: 124 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 164 >gi|254225011|ref|ZP_04918625.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51] gi|125622398|gb|EAZ50718.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51] Length = 244 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + + +LN++ A + Y + Sbjct: 107 QHSVAMVFGRERTGLTNEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158 >gi|226356726|ref|YP_002786466.1| tRNA/rRNA methyltransferase [Deinococcus deserti VCD115] gi|226318716|gb|ACO46712.1| putative tRNA/rRNA methyltransferase [Deinococcus deserti VCD115] Length = 252 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 1/49 (2%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 AL+ G E GL E + G +LN+S A + Y Sbjct: 106 ALVFGPEETGLINSDLEQCQVTVRIPT-GNYASLNLSQAVLLVCYEFLQ 153 >gi|139438050|ref|ZP_01771603.1| Hypothetical protein COLAER_00591 [Collinsella aerofaciens ATCC 25986] gi|133776247|gb|EBA40067.1| Hypothetical protein COLAER_00591 [Collinsella aerofaciens ATCC 25986] Length = 199 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 24/101 (23%), Gaps = 44/101 (43%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGIIKA--------------------- 262 D L+ G+E G+ + A + M + Sbjct: 95 YRDGDYLVFGSESSGIPEELLAAAPERCERIPMLRDCDSLDNAEAWEAHEESLGHTEDDH 154 Query: 263 ----------------------LNVSNAAAVALYITQNHFA 281 LN+SN+AA+ LY Sbjct: 155 EAILRQDICGNFVNPDDYRISALNLSNSAAIVLYEALRQTN 195 >gi|69249395|ref|ZP_00604960.1| hypothetical protein EfaeDRAFT_0097 [Enterococcus faecium DO] gi|68194182|gb|EAN08712.1| hypothetical protein EfaeDRAFT_0097 [Enterococcus faecium DO] Length = 34 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 14/32 (43%) Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ M G ++LNV AA + LY Sbjct: 1 MSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 32 >gi|227080925|ref|YP_002809476.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2] gi|298499121|ref|ZP_07008928.1| RNA methyltransferase [Vibrio cholerae MAK 757] gi|227008813|gb|ACP05025.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2] gi|297543454|gb|EFH79504.1| RNA methyltransferase [Vibrio cholerae MAK 757] Length = 244 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 25/70 (35%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 + + + L E K +A++ G E GL + + +LN++ Sbjct: 89 WPMLEPRECGEKLISEAKQHSVAMVFGRERTGLTNDELQLCHYHVCVPANPEYSSLNLAM 148 Query: 268 AAAVALYITQ 277 A + Y + Sbjct: 149 AVQLLSYEVR 158 >gi|332523185|ref|ZP_08399437.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus porcinus str. Jelinkova 176] gi|332314449|gb|EGJ27434.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus porcinus str. Jelinkova 176] Length = 181 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ E + NL Sbjct: 19 IVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMRRAGLDYWEKLDVRFYDNL 78 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 D L K +S + + + G E KGL ++ + Sbjct: 79 EDFLDKCDGQLHLISKFASKVYSDEHFDD-GQRHYFLFGREDKGLPEAFMRKYPEKALRI 137 Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279 M +++LN+SN + +Y Sbjct: 138 PMNDEHVRSLNLSNTVCMIVYEALRQ 163 >gi|316983221|pdb|3L8U|A Chain A, Crystal Structure Of Smu.1707c, A Putative Rrna Methyltransferase From Streptococcus Mutans Ua159 gi|316983222|pdb|3L8U|B Chain B, Crystal Structure Of Smu.1707c, A Putative Rrna Methyltransferase From Streptococcus Mutans Ua159 Length = 182 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + +L Sbjct: 20 VVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDSL 79 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 D + ++ + + ++ + G E KGL + ++ + + Sbjct: 80 NDFMNICSGKLHLITKFANKTYSDENYDD-SEHHYFLFGREDKGLPEEFMRQHSEKALRI 138 Query: 255 HMPGI-IKALNVSNAAAVALYITQNH 279 + +++LN+SN + +Y Sbjct: 139 PVNDQHVRSLNLSNTVCMIVYEALRQ 164 >gi|91774342|ref|YP_567034.1| RNA methyltransferase TrmH, group 1 [Methanococcoides burtonii DSM 6242] gi|91713357|gb|ABE53284.1| RNA methyltransferase [Methanococcoides burtonii DSM 6242] Length = 231 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 22/50 (44%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 IA+I G E G + + + + + I +N+S+A + LY Sbjct: 111 IAVIFGREDHGFTNEELKLSDVIVSIPTSKIYPIMNLSHAVTIILYEMSQ 160 >gi|330508017|ref|YP_004384445.1| TrmH family RNA methyltransferase [Methanosaeta concilii GP-6] gi|328928825|gb|AEB68627.1| RNA methyltransferase, TrmH family, group 1 [Methanosaeta concilii GP-6] Length = 245 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 22/52 (42%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K +AL+LG E GL + + +N+S++AA+ Y Sbjct: 109 KEGMVALLLGREDCGLNSDEISLCDMIVSIPTSEEYPVMNLSHSAAILFYEL 160 >gi|224436469|ref|ZP_03657483.1| rRNA methylase (SpoU class) [Helicobacter cinaedi CCUG 18818] gi|313142980|ref|ZP_07805173.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313128011|gb|EFR45628.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 156 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 2/150 (1%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 +VL P N G I R VA + E L ++ +++ Sbjct: 1 MDTFHIVLVEPQIPQNTGNIGRLCVATDSILHLIHPLGFSVEQKELKRAGLDYWQNLQVY 60 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 NL + +K + K Q + L G E +GL E+A Sbjct: 61 EWQNLKEFWEKHPINERHFFFSTKAKKLYY-QADFSQGGFLYFGREDRGLDSSLAESA-R 118 Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M I+++N++ + ALY Sbjct: 119 AYRLPMVKGIRSVNLATSVGAALYEGLRQL 148 >gi|167856325|ref|ZP_02479055.1| predicted rRNA methyltransferase [Haemophilus parasuis 29755] gi|219871054|ref|YP_002475429.1| rRNA methyltransferase [Haemophilus parasuis SH0165] gi|167852555|gb|EDS23839.1| predicted rRNA methyltransferase [Haemophilus parasuis 29755] gi|219691258|gb|ACL32481.1| rRNA methyltransferase [Haemophilus parasuis SH0165] Length = 335 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 49/276 (17%), Positives = 95/276 (34%), Gaps = 16/276 (5%) Query: 10 EKIFSLKDSHYA-KLRRNHRDYKKMQ-SFNQKS--RHTSQPENLF-LYGVHTVSAALNNP 64 E S K+ ++ ++ K + + ++ + + + +YG H SA Sbjct: 55 EANKSSKEGFVKVSVKDRNKPIKSKSGALSPRAPEKIRNNRASEMKVYGEHACSAIFQQR 114 Query: 65 SRKIFQLLATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLL 122 I +L T + + V + + ++ G E H G+ L Sbjct: 115 PEAIVRLWITSECAKKTGALLSYLADHKKAYHLVDTEEMLRVTGTE-HHGGMCLLVKKST 173 Query: 123 SPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 +L+ R L++LD VN+ NIG I+R+ + GII + S Sbjct: 174 PFSLEGYLQLERQHDCLILLDGVNNAQNIGGIIRTCAFYGIKGIIVENNDILNSSNAARV 233 Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + G P +Q + L + + + KI +L +E Sbjct: 234 AEGGLEFVYPLETKHKHIALMQLRKAGYQIVHLTRQRQAPHLSRIVLSKKIVFVL-SEV- 291 Query: 239 GLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273 + + + S+ L + + LNV+ A + L Sbjct: 292 -ISNEVEYPEDSIVQLSFANSLNSGLNVAVNAGILL 326 >gi|302341742|ref|YP_003806271.1| tRNA/rRNA methyltransferase (SpoU) [Desulfarculus baarsii DSM 2075] gi|301638355|gb|ADK83677.1| tRNA/rRNA methyltransferase (SpoU) [Desulfarculus baarsii DSM 2075] Length = 251 Score = 59.1 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A++ G E +GL + + ++ +LN++ + V Y + Sbjct: 109 MTWARRGPVAVVFGPEDRGLSHEQVDLCRLSINIPTS-QASSLNLAQSVIVLAYELR 164 >gi|153216245|ref|ZP_01950345.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587] gi|124114390|gb|EAY33210.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587] Length = 244 Score = 59.1 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 19/52 (36%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + +LN++ A + Y + Sbjct: 107 QHSVAMVFGRERTGLTNDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158 >gi|325919147|ref|ZP_08181205.1| rRNA methylase [Xanthomonas gardneri ATCC 19865] gi|325550388|gb|EGD21184.1| rRNA methylase [Xanthomonas gardneri ATCC 19865] Length = 153 Score = 59.1 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 24/48 (50%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 ++ ++GAE +G+ + + G +++LNV++A AV Sbjct: 93 LPQRLVYVMGAESEGMDRQFARDCDLQLSIRGSGKVESLNVASATAVF 140 >gi|124268025|ref|YP_001022029.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] gi|124260800|gb|ABM95794.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] Length = 239 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 1/54 (1%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ + G+E GL + S + P +LN++ A + Y Sbjct: 109 RQRVGFVFGSERYGLSNEDVYRCHSCLSIPTPADYGSLNLAQAVQLIAYD-WRQ 161 >gi|116073105|ref|ZP_01470367.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9916] gi|116068410|gb|EAU74162.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9916] Length = 241 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 23/53 (43%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 IAL+ G E GL + + LH +LN+S+A AV L+ Sbjct: 98 QQPIALVFGREDHGLTNAELLLSQRVITLHSSDTYPSLNLSHAVAVVLHDIAR 150 >gi|113954680|ref|YP_730178.1| RNA methyltransferase [Synechococcus sp. CC9311] gi|113882031|gb|ABI46989.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. CC9311] Length = 243 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 26/53 (49%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + AL+ G E +GL + + LH + +LN+S+A AV L+ + Sbjct: 108 RSALVFGREDRGLSNDELLISHRVFKLHTGDVYPSLNLSHAVAVVLHELERER 160 >gi|153831018|ref|ZP_01983685.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae 623-39] gi|148873496|gb|EDL71631.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae 623-39] Length = 203 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 10/202 (4%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTVPPQTIDKI 104 N +YG+H V+A L + + K RL N ++ + + +D Sbjct: 3 NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62 Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 + A HQGL P + A LL+VLD V DPHN+GA LR+A A Sbjct: 63 A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121 Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 +I K S +A ++K A GA E +P +R++NL ++ + G +G + ++ Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181 Query: 219 PLEQEIKNDKIALILGAEGKGL 240 + Q +A+++GAEG G+ Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGM 203 >gi|215402130|ref|ZP_03414311.1| RNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|289744077|ref|ZP_06503455.1| RNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|289684605|gb|EFD52093.1| RNA methyltransferase [Mycobacterium tuberculosis 02_1987] Length = 220 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + L+ G EG G+ + A + G +++N AA +A++ Sbjct: 158 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHA 208 >gi|222056219|ref|YP_002538581.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. FRC-32] gi|221565508|gb|ACM21480.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. FRC-32] Length = 251 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNH 279 ++AL+ G E GL + + + +LN++ A + Y + Sbjct: 114 MHRVALVFGREDSGLTTEEVALCRWQSTIPTADEYGSLNLAQAVLIFCYELHKRQ 168 >gi|171920658|ref|ZP_02695161.2| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185179064|ref|ZP_02555388.2| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024288|ref|ZP_02570194.2| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518663|ref|ZP_02557090.2| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524453|ref|ZP_02558302.2| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867597|ref|ZP_03079599.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273695|ref|ZP_03206230.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554398|ref|YP_002284668.1| RNA methyltransferase, TrmH family [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550819|ref|ZP_03771768.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551032|ref|ZP_03771978.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903391|gb|EDT49680.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209056|gb|EDU06099.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018961|gb|EDU57001.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997773|gb|EDU66870.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659660|gb|EDX53040.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660654|gb|EDX53909.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249723|gb|EDY74504.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541899|gb|ACI60128.1| RNA methyltransferase, TrmH family [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378847|gb|EEH01212.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379973|gb|EEH02335.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 172 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 39/134 (29%), Gaps = 1/134 (0%) Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 +G + I+ R+ A + + Sbjct: 23 VGFNANLHLIRPYGFILDKARFDKDFVRASANHLDELKLFEYDDFYEFIAKNNIIENQIY 82 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL-RPKTQETATSMAHLHMPGIIKALNV 265 F T + + + + L+ G E G+ ++ + + +++LN+ Sbjct: 83 FFTRYGTKAPCDYKYANLNKEDVYLVFGKESTGIDHDILRKYPQNWIRIPTSINLRSLNI 142 Query: 266 SNAAAVALYITQNH 279 +N+ A+ +Y Sbjct: 143 ANSVAMGIYEVLRQ 156 >gi|218459042|ref|ZP_03499133.1| probable RNA methylase protein [Rhizobium etli Kim 5] Length = 78 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++AL++G EG+GL A + + +LN + A +AL+ Sbjct: 24 RMALVVGTEGEGLPAALLARF-QSARIPQSDELDSLNAATATGIALF 69 >gi|167522701|ref|XP_001745688.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776037|gb|EDQ89659.1| predicted protein [Monosiga brevicollis MX1] Length = 549 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 6/75 (8%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 SS S + LE + L+LG E +G+ Q H+ + +++L+V+ AA Sbjct: 474 HAPSSWSHRQLEDVAWPHRRVLVLGHETRGVPRDLQPFC-QPVHIAIHPGVESLSVAAAA 532 Query: 270 AVAL-----YITQNH 279 A+ + Sbjct: 533 AILCDRVFAFECAKQ 547 >gi|153800584|ref|ZP_01955170.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3] gi|229523431|ref|ZP_04412838.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TM 11079-80] gi|124123873|gb|EAY42616.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3] gi|229339794|gb|EEO04809.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TM 11079-80] Length = 244 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 19/52 (36%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + +LN++ A + Y + Sbjct: 107 QHSVAMVFGRERTGLTNDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158 >gi|50308721|ref|XP_454364.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49643499|emb|CAG99451.1| KLLA0E09197p [Kluyveromyces lactis] Length = 1397 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 58/182 (31%), Gaps = 3/182 (1%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 V + K + ++++V S+L++V V+ N+G I R Sbjct: 1209 VNSTELAKNSPLQTKSGAWEAVLDFDNQKSIESVARSELIVVASLVDKAPNLGGICRLCD 1268 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEH---IPYIRISNLTDALQKMHSWGFQTIGL 212 + + + + +K+ + + Sbjct: 1269 VLGVGTMTIHDIRVKQHPQFKNVAVTADRWMPIEEVPVDGIISYMNAKKLEGYTLIGLEQ 1328 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + S + + K ++LG E G+ + + G+I+++N+ A AV Sbjct: 1329 TDSSIQLNSEFKFPSKSVILLGTEAHGIPGHLLKELDLCLEIKQSGVIRSMNIQTATAVI 1388 Query: 273 LY 274 ++ Sbjct: 1389 VH 1390 >gi|303274998|ref|XP_003056809.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461161|gb|EEH58454.1| predicted protein [Micromonas pusilla CCMP1545] Length = 292 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 3/102 (2%) Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 +P + PLE+ D+ +LG+E GL Sbjct: 158 WTSLPAYAYEDWGAFASAQPHACSWVAVEMGTDATPLEEFEHPDRAIYVLGSEDNGLPSS 217 Query: 244 TQETATSMAHLHMP-GIIKALNVSNAAAVALYI--TQNHFAK 282 L G + NV+ +V +Y + A+ Sbjct: 218 VLRACAHRVALPAAEGRTASFNVAACGSVVMYDRVAKRRRAE 259 >gi|222152587|ref|YP_002561762.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J] gi|222113398|emb|CAR41054.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J] Length = 181 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 3/146 (2%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL P N G I R+ A + I P + + ++ + + +L Sbjct: 19 VVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMRRAGLDYWDKLDVRFYDSL 78 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254 D ++K + + + + G E KGL ++ + Sbjct: 79 DDFVEKCDGKLHLISKFAETVYSDERFDD-GENHYYLFGREDKGLPETFMRKHPEKALRI 137 Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279 M +++LN+SN + +Y Sbjct: 138 PMNDEHVRSLNLSNTVCMIVYEALRQ 163 >gi|298252928|ref|ZP_06976722.1| SpoU class rRNA methylase [Gardnerella vaginalis 5-1] gi|297533292|gb|EFH72176.1| SpoU class rRNA methylase [Gardnerella vaginalis 5-1] Length = 233 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 19/155 (12%), Positives = 43/155 (27%), Gaps = 6/155 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + P N G+ +R + L ++ H Sbjct: 75 ETHTPHLCFYSPRIPGNTGSAIRLCAVTGTILHLVEPLGFNLHDTKLRRAGLDY--HDMA 132 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP--KTQE- 246 + + + I ++++ K + L+ G E + Sbjct: 133 HVVLHPNFENLVESMPNSRIIAFTANATKLYTEIEYKPNDILLFGPEPGDIPDPMDVMAG 192 Query: 247 -TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M +++LN++N A++A+Y Sbjct: 193 PHVAEQVRLPMRPSLRSLNLTNCASIAVYEAWRQL 227 >gi|283783614|ref|YP_003374368.1| putative RNA methyltransferase, TrmH family, group 2 [Gardnerella vaginalis 409-05] gi|283441476|gb|ADB13942.1| putative RNA methyltransferase, TrmH family, group 2 [Gardnerella vaginalis 409-05] Length = 229 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 19/155 (12%), Positives = 43/155 (27%), Gaps = 6/155 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + P N G+ +R + L ++ H Sbjct: 71 ETHTPHLCFYSPRIPGNTGSAIRLCAVTGTILHLVEPLGFNLHDTKLRRAGLDY--HDMA 128 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP--KTQE- 246 + + + I ++++ K + L+ G E + Sbjct: 129 HVVLHPNFENLVESMPNSRIIAFTANATKLYTEIEYKPNDILLFGPEPGDIPDPMDVMAG 188 Query: 247 -TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M +++LN++N A++A+Y Sbjct: 189 PHVAEQVRLPMRPSLRSLNLTNCASIAVYEAWRQL 223 >gi|255724784|ref|XP_002547321.1| hypothetical protein CTRG_01627 [Candida tropicalis MYA-3404] gi|240135212|gb|EER34766.1| hypothetical protein CTRG_01627 [Candida tropicalis MYA-3404] Length = 434 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALNVSNAAAVAL 273 + L++G+EG+G+R + + + + + +LNV A V L Sbjct: 379 PVMLVIGSEGEGVRTNVKLRSDYLVGIPKYRSDDVIVDSLNVGVATGVIL 428 Score = 45.2 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 43/142 (30%), Gaps = 30/142 (21%) Query: 2 NLISKKKSEKIFSLKDSHYAKL--RRNHRDYKKMQSFNQKSRHTSQPEN----------- 48 +K + + K+ +R HR+ + + + + EN Sbjct: 61 EFFMRKYGNITPEQRKALDEKVARQRRHREMRIAHEKALRDKEREERENARQMARMSKKS 120 Query: 49 -----------------LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91 +++G H V AAL R++ +L N + A Sbjct: 121 SPSSGSAGLLERNDTFFDYIFGTHAVKAALTAGKRRVLELYTYNNVDPEITKLAENKFGI 180 Query: 92 PVKTVPPQTIDKIVGKEAVHQG 113 + V + ++ K VH G Sbjct: 181 LPRMVRDKHALNVLCKNGVHNG 202 >gi|78222581|ref|YP_384328.1| RNA methyltransferase TrmH, group 1 [Geobacter metallireducens GS-15] gi|78193836|gb|ABB31603.1| RNA methyltransferase TrmH, group 1 [Geobacter metallireducens GS-15] Length = 248 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ AL+ G E GL A + +LN++ A + Y Sbjct: 111 NRAALVFGREDSGLTTDELSLCRWHATIPTSAEYGSLNLAQAVLIFCYEL 160 >gi|52425783|ref|YP_088920.1| LasT protein [Mannheimia succiniciproducens MBEL55E] gi|52307835|gb|AAU38335.1| LasT protein [Mannheimia succiniciproducens MBEL55E] Length = 244 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +IA++ G E GL ++ +LN++ A + Y + Sbjct: 106 CGQIAIVFGREKFGLTNDELLKCRYHLNIPANPDYSSLNLAMAVQLVSYELR 157 >gi|262172183|ref|ZP_06039861.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus MB-451] gi|261893259|gb|EEY39245.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus MB-451] Length = 244 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 19/49 (38%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + +LN++ A + Y + Sbjct: 110 VAMVFGRERTGLTNDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158 >gi|325088121|gb|EGC41431.1| RNA methyltransferase [Ajellomyces capsulatus H88] Length = 462 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 9/55 (16%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSNAAAVAL 273 L+LG+E +GL+ ++ A + + + +LNVS A+A+ Sbjct: 368 PCILMLGSEDQGLQKSVRQQADGVVVIPGAITSTGEEDRAGVDSLNVSVASALLC 422 >gi|255319194|ref|ZP_05360411.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Acinetobacter radioresistens SK82] gi|262379697|ref|ZP_06072853.1| rRNA methylase [Acinetobacter radioresistens SH164] gi|255303587|gb|EET82787.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Acinetobacter radioresistens SK82] gi|262299154|gb|EEY87067.1| rRNA methylase [Acinetobacter radioresistens SH164] Length = 280 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K +IA++ G E +GL + A + + LNV+ A V Y + Sbjct: 118 KQQEIAIVFGREDRGLTNEELALANYHVTIPVNTDYGVLNVAQAIQVICYEMR 170 >gi|240281983|gb|EER45486.1| RNA methyltransferase [Ajellomyces capsulatus H143] Length = 419 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 9/55 (16%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSNAAAVAL 273 L+LG+E +GL+ ++ A + + + +LNVS A+A+ Sbjct: 325 PCILMLGSEDQGLQKSVRQQADGVVVIPGAITSTGEEDRAGVDSLNVSVASALLC 379 >gi|225559060|gb|EEH07343.1| RNA methyltransferase [Ajellomyces capsulatus G186AR] Length = 462 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 9/55 (16%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSNAAAVAL 273 L+LG+E +GL+ ++ A + + + +LNVS A+A+ Sbjct: 368 PCILMLGSEDQGLQKSVRQQADGVVVIPGAITSTGEEDRAGVDSLNVSVASALLC 422 >gi|313680728|ref|YP_004058467.1| RNA methyltransferase, trmh family, group 1 [Oceanithermus profundus DSM 14977] gi|313153443|gb|ADR37294.1| RNA methyltransferase, TrmH family, group 1 [Oceanithermus profundus DSM 14977] Length = 240 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +AL+ G E GL + + A ++ + G +LN++ A + Y Sbjct: 106 GPVALLFGRENFGLSNEEMDRAHAVWRIPT-GGYASLNLAQAVLLVAYEV 154 >gi|313890845|ref|ZP_07824469.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus pseudoporcinus SPIN 20026] gi|313120743|gb|EFR43858.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus pseudoporcinus SPIN 20026] Length = 182 Score = 58.7 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 3/165 (1%) Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 + + +S+ +VL P N G I R+ A + I P + + Sbjct: 1 MMIVDIEHSQYREVDSKNHIVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKM 60 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 ++ E + NL D L K + +S + + + G E Sbjct: 61 RRAGLDYWEKLDVRFYDNLEDFLDKCNGQLHLISKFASKVYSDEHFDD-GQRHYFLFGRE 119 Query: 237 GKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279 KGL ++ + M +++LN+SN + +Y Sbjct: 120 DKGLPEAFMRKYPEKALRIPMNDQHVRSLNLSNTVCMVVYEALRQ 164 >gi|307945605|ref|ZP_07660941.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Roseibium sp. TrichSKD4] gi|307771478|gb|EFO30703.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Roseibium sp. TrichSKD4] Length = 293 Score = 58.7 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 19/51 (37%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 I G E GL + A + L + +LN++ A V Y + Sbjct: 148 PTGYIFGRERWGLNNEEVALADEIVTLPVDPDFASLNIAQAVLVCAYEWRK 198 >gi|332519777|ref|ZP_08396241.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] gi|332044336|gb|EGI80530.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] Length = 152 Score = 58.7 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 9/156 (5%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D N + + + P N+G + R+A I T ++ A++ Sbjct: 3 DNFENEYFGIGIQNGKTPENLGVLWRTAQNLGASYIFTIGNRYAKQACDTH----NAVKS 58 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +PY D + + DS LE + +LGAE GL + E Sbjct: 59 MPYFHYKTFEDFYKNIPKGARLVGVELDDSAVALETFHHPRRCVYLLGAEDHGLSKQAIE 118 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + +LNV+ A ++ +Y K Sbjct: 119 KSHFLVK---FKSQLSLNVAVAGSIVMYD--RGINK 149 >gi|94310024|ref|YP_583234.1| RNA methyltransferase TrmH [Cupriavidus metallidurans CH34] gi|93353876|gb|ABF07965.1| putative RNA methyltransferase (TrmH family) [Cupriavidus metallidurans CH34] Length = 289 Score = 58.7 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 22/49 (44%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E GL +++ H+ + +LN++ A + Y + Sbjct: 142 VAFVFGNERFGLPNDAVLRCSAVTHIPANPVYASLNLAQAVQLIAYEMR 190 >gi|255031038|ref|ZP_05302989.1| rRNA methylase [Listeria monocytogenes LO28] Length = 39 Score = 58.7 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 22/39 (56%) Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + P+ Q+ + ++ + G ++LNV+ AA + LY + Sbjct: 1 MSPELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 39 >gi|221502243|gb|EEE27981.1| rRNA methylase, putative [Toxoplasma gondii VEG] Length = 440 Score = 58.7 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++A+++G E KG + + +A + +L+VS AAAV LY Q Sbjct: 367 RLAVVVGNEQKGSSREVLDACDGIAAIAQVKG-DSLSVSTAAAVVLYTLQQ 416 >gi|237832273|ref|XP_002365434.1| rRNA methylase, putative [Toxoplasma gondii ME49] gi|211963098|gb|EEA98293.1| rRNA methylase, putative [Toxoplasma gondii ME49] Length = 440 Score = 58.7 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++A+++G E KG + + +A + +L+VS AAAV LY Q Sbjct: 367 RLAVVVGNEQKGSSREVLDACDGIAAIAQVKG-DSLSVSTAAAVVLYTLQQ 416 >gi|307354074|ref|YP_003895125.1| RNA methyltransferase [Methanoplanus petrolearius DSM 11571] gi|307157307|gb|ADN36687.1| RNA methyltransferase, TrmH family, group 1 [Methanoplanus petrolearius DSM 11571] Length = 247 Score = 58.7 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 26/73 (35%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + S+ + ++++I G E GL + + + +N+ Sbjct: 87 HAMRMPYYEPSELRDMIKDIEGRVSIIFGRENWGLSNEEIMKCDIICTIPTSPEYPIVNI 146 Query: 266 SNAAAVALYITQN 278 S+A V +Y N Sbjct: 147 SHAVGVIVYELAN 159 >gi|261337660|ref|ZP_05965544.1| RNA methyltransferase, TrmH family [Bifidobacterium gallicum DSM 20093] gi|270277098|gb|EFA22952.1| RNA methyltransferase, TrmH family [Bifidobacterium gallicum DSM 20093] Length = 222 Score = 58.7 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 4/100 (4%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 H + + + I ++ + K + L+ G E + T Sbjct: 117 YHDMAHVVLHPNFESLVESMPDSRIIAFTAHATKLYTEVEYRPNDILLFGPEPGNIPDPT 176 Query: 245 ----QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M +++LN++N A++A+Y Sbjct: 177 DIMFGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 216 >gi|304396506|ref|ZP_07378387.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB] gi|304356015|gb|EFM20381.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB] Length = 245 Score = 58.7 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +AL+ G E GL + E + + M +LN+ A V Y Sbjct: 114 QWVNSMALVFGREDSGLTNEELEQVDLLTGIPMANDYPSLNLGQAVMVYCYQL 166 >gi|291616207|ref|YP_003518949.1| LasT [Pantoea ananatis LMG 20103] gi|291151237|gb|ADD75821.1| LasT [Pantoea ananatis LMG 20103] Length = 247 Score = 58.7 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +AL+ G E GL + E + + M +LN+ A V Y Sbjct: 118 QWVNSMALVFGREDSGLTNEELEQVDLLTGIPMANDYPSLNLGQAVMVYCYQL 170 >gi|284161302|ref|YP_003399925.1| RNA methyltransferase, TrmH family, group 1 [Archaeoglobus profundus DSM 5631] gi|284011299|gb|ADB57252.1| RNA methyltransferase, TrmH family, group 1 [Archaeoglobus profundus DSM 5631] Length = 234 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 28/77 (36%) Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + + + E K +IA+ G E GL + E + + Sbjct: 80 YSYERYIRKPIFTPEEFRNFLEGKKGEIAVAFGREDYGLFNEELELCHMLVSVPTNPEYP 139 Query: 262 ALNVSNAAAVALYITQN 278 +NVS+A AV LY Sbjct: 140 VMNVSHAVAVILYELSK 156 >gi|261212154|ref|ZP_05926440.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC341] gi|260838762|gb|EEX65413.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC341] Length = 243 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 19/49 (38%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + +LN++ A + Y + Sbjct: 109 VAMVFGRERTGLTNDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 157 >gi|323339770|ref|ZP_08080040.1| RNA methyltransferase [Lactobacillus ruminis ATCC 25644] gi|323092849|gb|EFZ35451.1| RNA methyltransferase [Lactobacillus ruminis ATCC 25644] Length = 170 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 4/152 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + + ++ + ++ + + Sbjct: 1 MTNHIVLFEPLMPANTGNIARTCAGTNTELHLIKPLGFSTDDKYMKRAGLDYWDKVKITY 60 Query: 192 ISNLTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248 NL + L+ M + + + ++ ++ + G E GL ++ Sbjct: 61 HENLPEFLESMDENDELYVVSKFAERTYADVDYTDESKNHYFLFGKETTGLPEIFMRKYE 120 Query: 249 TSMAHLHMPG-IIKALNVSNAAAVALYITQNH 279 + I+ALN+SN AA+ +Y Sbjct: 121 KKCIRIPQNDRNIRALNLSNTAAIVIYEALRQ 152 >gi|327462030|gb|EGF08359.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1057] Length = 184 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 3/169 (1%) Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 L T + + +VL P N G I R+ A + I P + Sbjct: 1 MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDR 60 Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + ++ + + +L D +++M + + ++ + G Sbjct: 61 KMKRAGLDYWDKLDITYYDSLEDFMEQMDGRLYLISKFAEKVYSEENFAAESSH-YFMFG 119 Query: 235 AEGKGLRPKTQE-TATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281 E KGL + + M +++LNVSN + +Y Sbjct: 120 REDKGLPEEFMRCHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168 >gi|327396446|dbj|BAK13868.1| tRNA/rRNA methyltransferase LasT [Pantoea ananatis AJ13355] Length = 234 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +AL+ G E GL + E + + M +LN+ A V Y Sbjct: 105 QWVNSMALVFGREDSGLTNEELEQVDLLTGIPMANDYPSLNLGQAVMVYCYQL 157 >gi|304392671|ref|ZP_07374611.1| 23S rRNA methyltransferase [Ahrensia sp. R2A130] gi|303295301|gb|EFL89661.1| 23S rRNA methyltransferase [Ahrensia sp. R2A130] Length = 210 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 3/107 (2%) Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 A H + ++ +D L + A +LG Sbjct: 45 NHAPADTTNSHDHMPWYTYSGIDTMQLPDDCRLVGVELTDDAIALPSFRHPLRAAYLLGP 104 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 E L P E + + LNV+ A AV +Y + Sbjct: 105 ENGSLSPDAMEKCEFIIKIPTAF---CLNVATAGAVIMYDRMQSLGR 148 >gi|224003205|ref|XP_002291274.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220973050|gb|EED91381.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 167 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 28/68 (41%) Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 S+D Q + ++AL+ G+E G+ +T M + +LN++ A Sbjct: 87 NNHSTDDTNDRHQHSNSIRLALVFGSEKTGMTESDMDTCHVMLGIPTNPQFGSLNLAAAV 146 Query: 270 AVALYITQ 277 + Y + Sbjct: 147 QLIAYDWR 154 >gi|153829408|ref|ZP_01982075.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39] gi|148875128|gb|EDL73263.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39] Length = 244 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 19/52 (36%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + +LN++ A + Y + Sbjct: 107 QHSVAMVFGRERTGLTNDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158 >gi|156845610|ref|XP_001645695.1| hypothetical protein Kpol_1043p27 [Vanderwaltozyma polyspora DSM 70294] gi|156116362|gb|EDO17837.1| hypothetical protein Kpol_1043p27 [Vanderwaltozyma polyspora DSM 70294] Length = 1430 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 54/185 (29%), Gaps = 4/185 (2%) Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153 +T P+ I+ + G + S D L+V+ + D + Sbjct: 1239 QTKTPEEIESKTTQLQTKSGAWETVLDIDSEKSDRSVTRSDLIVVSSLVDKPPNLGGICR 1298 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI--- 210 G++T + A A +P + Sbjct: 1299 LCDVLGVGLLTVQDIRVKNHPQFKNVAVTADRWMPMEEVPIDGIIEFMRAKKKEGYTLIG 1358 Query: 211 -GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + S + + K ++LG E G+ + G+I+++N+ A Sbjct: 1359 LEQTDKSIQLNNKYTFPKKSLILLGTEAHGIPGHLLSELDLCLEIEQHGVIRSMNIQTAT 1418 Query: 270 AVALY 274 AV +Y Sbjct: 1419 AVIVY 1423 >gi|54023445|ref|YP_117687.1| hypothetical protein nfa14780 [Nocardia farcinica IFM 10152] gi|54014953|dbj|BAD56323.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 165 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 10/151 (6%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + H N+G + RSA+ + + T R A + A IP Sbjct: 4 FFGVAVWHPKHEVNVGTLWRSALTYEAAMLATVGRRYK----PQAGDTTKAPNSIPLHHF 59 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 ++ D + + + L + +LGAE GL + Sbjct: 60 EDVADLVDHLPHGCPLIGVELDPRAESLTTFAHPRRALYLLGAEDHGLPEAVLTLCHQVI 119 Query: 253 HLHMPGIIKALNVSNAAAVALY-----ITQN 278 + +LNVS A ++ L+ +Q Sbjct: 120 QIP-SPAPWSLNVSVAGSLVLHDRFVKESQR 149 >gi|293363523|ref|ZP_06610279.1| putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma alligatoris A21JP2] gi|292552872|gb|EFF41626.1| putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma alligatoris A21JP2] Length = 175 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 9/94 (9%), Positives = 30/94 (31%), Gaps = 1/94 (1%) Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 K + + + + K+ ++ L+ G E G+ + Sbjct: 61 HDSYKDFYNKYKNKNIYYITRYGLRTYTENNFKNEYDKHKEVWLMFGRESTGIDKSILQN 120 Query: 248 -ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M ++++N++N+ + + Sbjct: 121 NLENCLRIPMVSEMRSINLANSVCILGFEVMRQL 154 >gi|88602300|ref|YP_502478.1| RNA methyltransferase TrmH, group 1 [Methanospirillum hungatei JF-1] gi|88187762|gb|ABD40759.1| RNA methyltransferase TrmH, group 1 [Methanospirillum hungatei JF-1] Length = 251 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 27/77 (35%) Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 + + S + + I+++ G E GL + A + + + Sbjct: 82 YSACHPTRMPFYSPKEIRDLIRDLDGTISILFGRENWGLSNEEVRRADIICTIPTSPLYP 141 Query: 262 ALNVSNAAAVALYITQN 278 +N+S+A V Y N Sbjct: 142 IINLSHAVGVICYELAN 158 >gi|15640765|ref|NP_230395.1| RNA methyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591445|ref|ZP_01678721.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80] gi|121729723|ref|ZP_01682164.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52] gi|147675237|ref|YP_001216231.1| RNA methyltransferase [Vibrio cholerae O395] gi|153817241|ref|ZP_01969908.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457] gi|153822720|ref|ZP_01975387.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33] gi|229505640|ref|ZP_04395150.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae BX 330286] gi|229510688|ref|ZP_04400167.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae B33] gi|229517810|ref|ZP_04407254.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC9] gi|229530124|ref|ZP_04419514.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae 12129(1)] gi|229608658|ref|YP_002879306.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae MJ-1236] gi|254285464|ref|ZP_04960428.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226] gi|254847883|ref|ZP_05237233.1| RNA methyltransferase [Vibrio cholerae MO10] gi|255744553|ref|ZP_05418504.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholera CIRS 101] gi|262161313|ref|ZP_06030424.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae INDRE 91/1] gi|262168806|ref|ZP_06036501.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC27] gi|262190471|ref|ZP_06048722.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae CT 5369-93] gi|9655191|gb|AAF93911.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546696|gb|EAX56875.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80] gi|121628540|gb|EAX61023.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52] gi|126512157|gb|EAZ74751.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457] gi|126519751|gb|EAZ76974.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33] gi|146317120|gb|ABQ21659.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395] gi|150424326|gb|EDN16263.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226] gi|227012570|gb|ACP08780.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395] gi|229333898|gb|EEN99384.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae 12129(1)] gi|229344525|gb|EEO09499.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC9] gi|229350653|gb|EEO15594.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae B33] gi|229357863|gb|EEO22780.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae BX 330286] gi|229371313|gb|ACQ61736.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae MJ-1236] gi|254843588|gb|EET22002.1| RNA methyltransferase [Vibrio cholerae MO10] gi|255737584|gb|EET92978.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholera CIRS 101] gi|262022924|gb|EEY41630.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC27] gi|262029063|gb|EEY47716.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae INDRE 91/1] gi|262033643|gb|EEY52132.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae CT 5369-93] gi|327483533|gb|AEA77940.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae LMA3894-4] Length = 244 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 19/52 (36%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + +LN++ A + Y + Sbjct: 107 QHSVAMVFGRERTGLTNDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158 >gi|320354680|ref|YP_004196019.1| tRNA/rRNA methyltransferase SpoU [Desulfobulbus propionicus DSM 2032] gi|320123182|gb|ADW18728.1| tRNA/rRNA methyltransferase (SpoU) [Desulfobulbus propionicus DSM 2032] Length = 264 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +++ L+ G E GL + + + + G +LN++ A A+ Y Sbjct: 117 NRVGLMFGPEDSGLSNEDLDLCQFASTIPTAG-FSSLNLAQAVAIHCYELY 166 >gi|110668383|ref|YP_658194.1| tRNA/rRNA methyltransferase [Haloquadratum walsbyi DSM 16790] gi|109626130|emb|CAJ52582.1| probable tRNA/rRNA methyltransferase [Haloquadratum walsbyi DSM 16790] Length = 332 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 20/49 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G EG GL + + + LN+ AA V LY + Sbjct: 115 TALVFGREGTGLTNDELTSLDEVCSIPANESYPVLNLGQAATVLLYELR 163 >gi|89094499|ref|ZP_01167438.1| putative tRNA/rRNA methyltransferase (trmH family protein) [Oceanospirillum sp. MED92] gi|89081235|gb|EAR60468.1| putative tRNA/rRNA methyltransferase (trmH family protein) [Oceanospirillum sp. MED92] Length = 241 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 18/48 (37%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +AL+ G E GL + ++ LNVS A + Y Sbjct: 110 VALVFGRETMGLHNHELQQCNFHVYIPANPEYPVLNVSQAIQLLCYEI 157 >gi|315054983|ref|XP_003176866.1| rRNA methyltransferase [Arthroderma gypseum CBS 118893] gi|311338712|gb|EFQ97914.1| rRNA methyltransferase [Arthroderma gypseum CBS 118893] Length = 565 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 9/55 (16%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSNAAAVAL 273 L+LG EG GL+ K + A + + +LNVS A+A+ Sbjct: 481 PCVLMLGGEGSGLQQKIKNRADMFVTIPGAYSDNIRDDTAGVSSLNVSVASALLC 535 >gi|291298242|ref|YP_003509520.1| tRNA/rRNA methyltransferase SpoU [Stackebrandtia nassauensis DSM 44728] gi|290567462|gb|ADD40427.1| tRNA/rRNA methyltransferase (SpoU) [Stackebrandtia nassauensis DSM 44728] Length = 205 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 50/149 (33%), Gaps = 4/149 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + +++ NIG ++R+A AF+ + + + + + H Sbjct: 54 HRHDFHVAIENWQHDFNIGTVVRNANAFAAKAVHIVGKRRWNRRGAMVTDRYQHVHHHDT 113 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 I ++ G + S + L G EG GL ++ + Sbjct: 114 IDGFVDWAQRHELPIIGIDNLPGSVPLET----TTLPSACVLFFGQEGPGLSRAARDASR 169 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + G +++N A+ +A++ Sbjct: 170 LVCSIAQFGSTRSINAGVASGIAMHAWIR 198 >gi|254173135|ref|ZP_04879808.1| RNA methyltransferase, TrmH family, group 1 [Thermococcus sp. AM4] gi|214032544|gb|EEB73373.1| RNA methyltransferase, TrmH family, group 1 [Thermococcus sp. AM4] Length = 233 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 21/65 (32%) Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + ++ L G E GL+ E + + +N++ A AV L Sbjct: 90 YPWELRETLNGYTGEVGLFFGRESIGLKNDELERLDLIVTIPTSDAYPVMNLAQAVAVIL 149 Query: 274 YITQN 278 Y Sbjct: 150 YELSK 154 >gi|116748737|ref|YP_845424.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB] gi|116697801|gb|ABK16989.1| RNA methyltransferase, TrmH family, group 1 [Syntrophobacter fumaroxidans MPOB] Length = 257 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 1/48 (2%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A++ G E GL + + + ++N++ A + Y Sbjct: 114 AILFGTESSGLTNEQLRFCDFLVTIPTADFA-SINLAQAVMIVAYELY 160 >gi|255023185|ref|ZP_05295171.1| hypothetical protein LmonocyFSL_06450 [Listeria monocytogenes FSL J1-208] Length = 63 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 19/72 (26%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K++++ + K + + + G H V A Sbjct: 1 MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41 Query: 61 LNNPSRKIFQLL 72 L + L+ Sbjct: 42 LRQDGLVLELLV 53 >gi|297243865|ref|ZP_06927795.1| SpoU class rRNA methylase [Gardnerella vaginalis AMD] gi|296888286|gb|EFH27028.1| SpoU class rRNA methylase [Gardnerella vaginalis AMD] Length = 229 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 19/155 (12%), Positives = 43/155 (27%), Gaps = 6/155 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + P N G+ +R + L ++ H Sbjct: 71 ETHTPHLCFYSPRIPGNTGSAIRLCAVTGTILHLVEPLGFNLHDTKLRRAGLDY--HDMA 128 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP--KTQE- 246 + + + I ++++ K + L+ G E + Sbjct: 129 HVVLHPNFENLVESMPNSRIIAFTANATKLYTEIEYKSNDILLFGPEPGDIPDPMDVMAG 188 Query: 247 -TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M +++LN++N A++A+Y Sbjct: 189 PHVAEQVRLPMRPSLRSLNLTNCASIAVYEAWRQL 223 >gi|254472132|ref|ZP_05085532.1| RNA methyltransferase, TrmH family [Pseudovibrio sp. JE062] gi|211958415|gb|EEA93615.1| RNA methyltransferase, TrmH family [Pseudovibrio sp. JE062] Length = 186 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 5/145 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + + ++ N+G ++R+ AF T + A + S + +H+PY Sbjct: 4 YFAIGSEGLSKSMNVGTLMRTGHAFGASYFFTVDAHIKGLGAAMKADTSKSPDHLPYFAW 63 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +++ + + P A ILG E L + QE + Sbjct: 64 NSVDEMQFPRGCKLVGVELTDDAIELPSFGHPLQ--AAYILGPERGSLSKEMQERCDYIV 121 Query: 253 HLHMPGIIKALNVSNAAAVALYITQ 277 + LNV AAA+ LY Sbjct: 122 KIPTKF---CLNVGVAAALVLYDRY 143 >gi|260944646|ref|XP_002616621.1| hypothetical protein CLUG_03862 [Clavispora lusitaniae ATCC 42720] gi|238850270|gb|EEQ39734.1| hypothetical protein CLUG_03862 [Clavispora lusitaniae ATCC 42720] Length = 1423 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 25/56 (44%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K ++LG E +G+ + + GI++++N+ A AV ++ + Sbjct: 1366 QFPKKSLILLGREKEGIPGELLAELDLCVEIKQVGIVRSMNIQTATAVIVHAYASQ 1421 >gi|315226148|ref|ZP_07867936.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM 10105] gi|315120280|gb|EFT83412.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM 10105] Length = 238 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 29/99 (29%), Gaps = 4/99 (4%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242 H + + + I ++ + + L+ G E + Sbjct: 133 YHDMTHVVIHPDFDNLIESMPDSRIISFTAQATTLYTEVEYRPTDILLFGPEPGDIPDPM 192 Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 M +++LN++N A++ALY Sbjct: 193 DIMAGPHIYQQVRFPMRPSLRSLNLANCASIALYEAWRQ 231 >gi|294786566|ref|ZP_06751820.1| RNA methyltransferase, TrmH family [Parascardovia denticolens F0305] gi|294485399|gb|EFG33033.1| RNA methyltransferase, TrmH family [Parascardovia denticolens F0305] Length = 231 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 29/99 (29%), Gaps = 4/99 (4%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242 H + + + I ++ + + L+ G E + Sbjct: 126 YHDMTHVVIHPDFDNLIESMPDSRIISFTAQATTLYTEVEYRPTDILLFGPEPGDIPDPM 185 Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 M +++LN++N A++ALY Sbjct: 186 DIMAGPHIYQQVRFPMRPSLRSLNLANCASIALYEAWRQ 224 >gi|218778250|ref|YP_002429568.1| RNA methyltransferase, TrmH family, group 1 [Desulfatibacillum alkenivorans AK-01] gi|218759634|gb|ACL02100.1| RNA methyltransferase, TrmH family, group 1 [Desulfatibacillum alkenivorans AK-01] Length = 251 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +++AL+ G E +GL + + ++ G +LN++ A + Y Sbjct: 112 NRVALVFGREDRGLSTEDVRLCHQLVNIRTAG-FSSLNLAQAVLLVCYELFK 162 >gi|296826196|ref|XP_002850935.1| RNA methyltransferase [Arthroderma otae CBS 113480] gi|238838489|gb|EEQ28151.1| RNA methyltransferase [Arthroderma otae CBS 113480] Length = 510 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 9/55 (16%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSNAAAVAL 273 L+LG EG GL+ K + A + + + +LNVS A+A+ Sbjct: 427 PCVLMLGGEGSGLQQKIKNRADAFVTIPGAYSDNICDDIAGVSSLNVSVASALLC 481 >gi|262165058|ref|ZP_06032795.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus VM223] gi|262024774|gb|EEY43442.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus VM223] Length = 244 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 19/49 (38%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL + + +LN++ A + Y + Sbjct: 110 VAMVFGRERTGLTNDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158 >gi|225351757|ref|ZP_03742780.1| hypothetical protein BIFPSEUDO_03354 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158101|gb|EEG71384.1| hypothetical protein BIFPSEUDO_03354 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 221 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 4/100 (4%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242 H + + + I ++ + K L+ G E + Sbjct: 116 YHDMAHVVLHPNFENLVESMPNSRIIAFTAHATKLYTDIEYKPTDILLFGPEPGNIPDPM 175 Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M +++LN++N A++A+Y Sbjct: 176 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 215 >gi|212716243|ref|ZP_03324371.1| hypothetical protein BIFCAT_01159 [Bifidobacterium catenulatum DSM 16992] gi|212660755|gb|EEB21330.1| hypothetical protein BIFCAT_01159 [Bifidobacterium catenulatum DSM 16992] Length = 221 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 4/100 (4%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242 H + + + I ++ + K L+ G E + Sbjct: 116 YHDMAHVVLHPNFENLVESMPNSRIIAFTAHATKLYTDIEYKPTDILLFGPEPGNIPDPM 175 Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M +++LN++N A++A+Y Sbjct: 176 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 215 >gi|119713414|gb|ABL97476.1| RNA methyltransferase [uncultured marine bacterium HF130_81H07] Length = 243 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 22/53 (41%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K A+I G E GL + + + +LN+S+A + + + Sbjct: 112 KNKTAVIFGREDNGLSNEELQKCHIHLVIPTSVEYPSLNLSHALQLVAFEIRK 164 >gi|311696308|gb|ADP99181.1| RNA methyltransferase, TrmH family, group 1 [marine bacterium HP15] Length = 242 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 AL+ G E +GL + + + M +LN++ +V LY Sbjct: 109 ALVFGREDRGLSNEELALCDLLTGIPMKVTYPSLNLAQ--SVMLYA 152 >gi|301155625|emb|CBW15093.1| predicted methyltransferase [Haemophilus parainfluenzae T3T1] Length = 357 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 87/257 (33%), Gaps = 16/257 (6%) Query: 28 RDYKKMQSFNQK-----SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 KK + + + ++ ++ +YG + I ++ AT R+ Sbjct: 100 PKEKKTGALSPRAPEKIKKNRAEEMK--VYGENACLELFAERPESIVRVWATVQMAHRIG 157 Query: 83 WDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMV 137 + L V V +V H G+ + + + LD R L+V Sbjct: 158 EIFSYLAANKKVYHVVDSDELSLVSGTEHHGGICMLVKKQRTFSLQGYLDVPRQEDCLVV 217 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD VN+ N+G ++R+ V + ++T + A + + G S Sbjct: 218 LDQVNNAQNLGGVVRTCVFYGIKNVVTNQVEQLYAPAAMRVAEGGMEHIRILETESTEIA 277 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 + ++ LEQ K+AL+L +G +E L + Sbjct: 278 LEALRKAGYQIIHVSTNKQGIALEQLKFAAKVALVL---SEGSTDDIREKEDVNVRLSLS 334 Query: 258 GIIKA-LNVSNAAAVAL 273 +K LN++ + L Sbjct: 335 NPLKTGLNIAVNTGILL 351 >gi|242022188|ref|XP_002431523.1| hypothetical protein Phum_PHUM534190 [Pediculus humanus corporis] gi|212516817|gb|EEB18785.1| hypothetical protein Phum_PHUM534190 [Pediculus humanus corporis] Length = 1475 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 22/50 (44%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K L+LG E +G+ P + GII++LNV V L+ Sbjct: 1422 FPKKSLLLLGNEKEGIPPNLLPLLDICVEIPQVGIIRSLNVHVTGDVMLF 1471 >gi|154150404|ref|YP_001404022.1| RNA methyltransferase [Candidatus Methanoregula boonei 6A8] gi|153998956|gb|ABS55379.1| RNA methyltransferase, TrmH family, group 1 [Methanoregula boonei 6A8] Length = 261 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 26/74 (35%) Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + S + I +++++ G E GL + + + + +N Sbjct: 85 CNPMRMPFYSPRELRERIGIAEGRVSILFGRENWGLNNDEVKRSDMICTIPTSDEYPIMN 144 Query: 265 VSNAAAVALYITQN 278 +S+A + Y N Sbjct: 145 LSHAVGIVCYELAN 158 >gi|325117118|emb|CBZ52670.1| putative rRNA methylase [Neospora caninum Liverpool] Length = 545 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +A+++G E KG + + +A + +L+VS AAAV LY Q Sbjct: 473 LAVVVGNEQKGSSREVLDACDGIAAIAQVKG-DSLSVSTAAAVVLYTLQQ 521 >gi|320450586|ref|YP_004202682.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Thermus scotoductus SA-01] gi|320150755|gb|ADW22133.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Thermus scotoductus SA-01] Length = 252 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 21/50 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +AL+ G E GL + + A + + +LN++ A V Y Sbjct: 112 VALVFGRETFGLTNEELDLAHLIGTIPTAPEQPSLNLAQAVVVFAYELYQ 161 >gi|294140922|ref|YP_003556900.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12] gi|293327391|dbj|BAJ02122.1| RNA methyltransferase, TrmH family, group 1 [Shewanella violacea DSS12] Length = 230 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV---ALYITQNHFAK 282 KIAL+ G E GL E +++ + +LN++ A V AL N + Sbjct: 106 KKIALLFGRESSGLSNSELELCDVFSYVPLINDYPSLNLAQAVMVYSYALSEVNNRLKQ 164 >gi|221235541|ref|YP_002517978.1| SpoU family methyltransferase [Caulobacter crescentus NA1000] gi|220964714|gb|ACL96070.1| rRNA methylase, SpoU family [Caulobacter crescentus NA1000] Length = 263 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 21/47 (44%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L+ G E GL ++ + + ++LN++ A ++ Y + Sbjct: 119 LLFGGERAGLETDDIALCQAIVSIPIDERFRSLNLAQAVSINAYEWK 165 >gi|16126759|ref|NP_421323.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|13424077|gb|AAK24491.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] Length = 251 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 21/47 (44%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L+ G E GL ++ + + ++LN++ A ++ Y + Sbjct: 107 LLFGGERAGLETDDIALCQAIVSIPIDERFRSLNLAQAVSINAYEWK 153 >gi|262369728|ref|ZP_06063056.1| RNA methyltransferase [Acinetobacter johnsonii SH046] gi|262315796|gb|EEY96835.1| RNA methyltransferase [Acinetobacter johnsonii SH046] Length = 282 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E +GL + A + + LNV+ A V Y + Sbjct: 119 QQDVAVVFGREDRGLTNEELAMANYHVTIPVNTDYGVLNVAQAIQVICYEMR 170 >gi|48477401|ref|YP_023107.1| rRNA methylase [Picrophilus torridus DSM 9790] gi|48430049|gb|AAT42914.1| rRNA methylase [Picrophilus torridus DSM 9790] Length = 235 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 20/63 (31%) Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + ++AL+ G E GL + N+S+A A+ LY Sbjct: 98 YFWDNYGLNGKRVALVFGREDNGLNNYELSKCNFFIKIIGNPEYPVYNLSHAVAIILYEM 157 Query: 277 QNH 279 Sbjct: 158 IKR 160 >gi|52424303|ref|YP_087440.1| SpoU protein [Mannheimia succiniciproducens MBEL55E] gi|52306355|gb|AAU36855.1| SpoU protein [Mannheimia succiniciproducens MBEL55E] Length = 369 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 99/283 (34%), Gaps = 21/283 (7%) Query: 7 KKSEKIFSLKDSHYAKLRRN-----HRDYKKMQSFNQK-----SRHTSQPENLFLYGVHT 56 + KI K + + + KK S + + ++ ++ +YG Sbjct: 87 PQETKITETKLGNVKVVMKRSGVSEQPRVKKTGSLSPRAPEKIKKNRAEEMK--VYGESA 144 Query: 57 VSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115 A I ++ AT ++ + L V V + ++V H G+ Sbjct: 145 CLALFAERPESIVRVWATVEMAHKIGDMFSYLAANKKVYHVVERAELELVSGTEHHGGIC 204 Query: 116 LETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 + TL D R L++LD+V +P NIG I+R+ + G+I + Sbjct: 205 MLVKKARPFTLTGYLDIPRQQDALIILDNVRNPQNIGGIIRTCAFYGVKGVIVDNAELLN 264 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231 +A + + G S + + ++ K + + K+ Sbjct: 265 SAAAMRVAEGGMEYIHQLQTESPDDALAKLRKAGYQVVHTTTNKQAKGVHKLQLAKKVVF 324 Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273 +L E + P ++ + +L +K LNV+ AA V L Sbjct: 325 VL-TESE--NPALVQSGDEVINLSFANPLKTGLNVAVAAGVLL 364 >gi|284044449|ref|YP_003394789.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684] gi|283948670|gb|ADB51414.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684] Length = 261 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 18/51 (35%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L G E GL A + M + +LN++ A + L+ Sbjct: 209 QLPPGAILAFGTERHGLSDALLTCAELRLRIEMRAGVSSLNLATAVSAVLF 259 >gi|284989407|ref|YP_003407961.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM 43160] gi|284062652|gb|ADB73590.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM 43160] Length = 269 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 102/245 (41%), Gaps = 15/245 (6%) Query: 28 RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87 D++ +++ ++ + + GV V L +P R + +L LA LD L Sbjct: 17 ADFRDLKAGDRPPGTERGTGPVIVEGVPAVERLLTSPYR-VRAVLGVPGRLAALD----L 71 Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHV 141 P P + +++G +G+ LD + L VL+ + Sbjct: 72 PEGVPAYEADKWVLSEVIGFRLT-RGVLASADRRPPADLDALLTGPDPAAPRRLAVLEAL 130 Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 ND N+G+I RSAVA DG++ R + + + G + +P+ + + L + Sbjct: 131 NDAENLGSIARSAVALGVDGLLLDPRCADPLYRRSVRVSMGHVLALPFAALPDWPGGLDR 190 Query: 202 MHSWGFQTIGLSSDSKKPL---EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258 +H G+ T+ L+ + + A++LGAEG GL P+ Q A A + M Sbjct: 191 LHDAGYLTVALTPAEDAVDLAEVDPRAHPRTAVLLGAEGPGLTPQAQRAARVRARIPMRT 250 Query: 259 IIKAL 263 + +L Sbjct: 251 GVDSL 255 >gi|312375375|gb|EFR22762.1| hypothetical protein AND_14238 [Anopheles darlingi] Length = 407 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 41/248 (16%), Positives = 80/248 (32%), Gaps = 19/248 (7%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 Y L+ N Y ++ + + + L L G + R + + Sbjct: 161 KLRYTVLQSNDARYGDLKMLVSSRKRREREKMLVLEGRRLILDGCAAGLRLEAVVASDVK 220 Query: 77 ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS---- 132 L L +N P P V QT+ + + + AP + A ++ Sbjct: 221 LLGELGLKSN-PKDCPFFLVNRQTMMEWSSLTTSPGLIGVFAAPQNLAEVIARNSTAGGS 279 Query: 133 ---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + +V D++ +P+N+G+++RS A S +I K + + +G+ IP Sbjct: 280 KRLPVTVVCDNIREPNNLGSVIRSCAAVSAQEVILLKGCAHPWDLKCLRGGAGSHFRIPI 339 Query: 190 IRISNLTDALQKMHSWGFQTI-----------GLSSDSKKPLEQEIKNDKIALILGAEGK 238 L + + I G + D + L +G E Sbjct: 340 HGPMELYQLPELTRAGSIFVIADNKSAGDGLAGGFRWEQYDRIDYGSADHVVLFIGGETY 399 Query: 239 GLRPKTQE 246 G+ + Sbjct: 400 GVSEDVRR 407 >gi|322834489|ref|YP_004214516.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602] gi|321169690|gb|ADW75389.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602] Length = 228 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 24/71 (33%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + E+ + AL+ G E GL + E A + + M +LN+ Sbjct: 85 FHYYCTPQELQVQLEEKSQWVNHAALVFGREDSGLTNEELELADVLTGVPMVADYPSLNL 144 Query: 266 SNAAAVALYIT 276 A V Y Sbjct: 145 GQAVMVFCYQL 155 >gi|303326589|ref|ZP_07357032.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp. 3_1_syn3] gi|302864505|gb|EFL87436.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp. 3_1_syn3] Length = 108 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 19/39 (48%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 L+LG E KGLRP + M + + +LNV+ Sbjct: 50 PAVLVLGNEDKGLRPGVAKRCAHMLRIPLARPFDSLNVA 88 >gi|157147586|ref|YP_001454905.1| putative RNA methyltransferase [Citrobacter koseri ATCC BAA-895] gi|157084791|gb|ABV14469.1| hypothetical protein CKO_03386 [Citrobacter koseri ATCC BAA-895] Length = 228 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 3/62 (4%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI---TQNHF 280 + AL+ G E GL + A + + M +LN+ A V Y Sbjct: 103 QWMNHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLAGLMQQL 162 Query: 281 AK 282 AK Sbjct: 163 AK 164 >gi|291614716|ref|YP_003524873.1| RNA methyltransferase, TrmH family, group 1 [Sideroxydans lithotrophicus ES-1] gi|291584828|gb|ADE12486.1| RNA methyltransferase, TrmH family, group 1 [Sideroxydans lithotrophicus ES-1] Length = 254 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ +AL+ G E GL + A ++ +LN++ A V Y Sbjct: 111 SNPVALLFGTEMSGLTNEEMGKAQLGVNIPANPDFSSLNIAAAVQVMAYELN 162 >gi|15805603|ref|NP_294299.1| RNA methyltransferase [Deinococcus radiodurans R1] gi|6458273|gb|AAF10156.1|AE001916_2 RNA methyltransferase, putative [Deinococcus radiodurans R1] Length = 255 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 1/49 (2%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 AL+ G E GL E + G +LN++ A + Y Sbjct: 116 ALVFGPEETGLINSDLEQCQVTVRIPT-GDYASLNLAQAVLLVCYEFLQ 163 >gi|270346815|pdb|3KTY|A Chain A, Crystal Structure Of Probable Methyltransferase From Bordetella Pertussis Tohama I gi|270346816|pdb|3KTY|B Chain B, Crystal Structure Of Probable Methyltransferase From Bordetella Pertussis Tohama I gi|270346817|pdb|3KTY|C Chain C, Crystal Structure Of Probable Methyltransferase From Bordetella Pertussis Tohama I Length = 173 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++LG E GL E + H+ +LNV+ A +A + + Sbjct: 121 VAIVLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAWELR 169 >gi|33592943|ref|NP_880587.1| methyltransferase [Bordetella pertussis Tohama I] gi|33572591|emb|CAE42183.1| probable methyltransferase [Bordetella pertussis Tohama I] gi|332382355|gb|AEE67202.1| methyltransferase [Bordetella pertussis CS] Length = 258 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++LG E GL E + H+ +LNV+ A +A + + Sbjct: 118 VAIVLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAWELR 166 >gi|33596879|ref|NP_884522.1| methyltransferase [Bordetella parapertussis 12822] gi|33573580|emb|CAE37574.1| probable methyltransferase [Bordetella parapertussis] Length = 258 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++LG E GL E + H+ +LNV+ A +A + + Sbjct: 118 VAIVLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAWELR 166 >gi|33600713|ref|NP_888273.1| methyltransferase [Bordetella bronchiseptica RB50] gi|33568313|emb|CAE32225.1| probable methyltransferase [Bordetella bronchiseptica RB50] Length = 258 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++LG E GL E + H+ +LNV+ A +A + + Sbjct: 118 VAIVLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAWELR 166 >gi|324501288|gb|ADY40576.1| Methyltransferase TARBP1 [Ascaris suum] Length = 1251 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K L+LG E +G+ + + G ++LNV A+ ++ Sbjct: 1190 MFRFPRKCVLLLGDEKEGIPVEYIRYVDHSVEIAQVGQTRSLNVHVTGALFIH 1242 >gi|300024766|ref|YP_003757377.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans ATCC 51888] gi|299526587|gb|ADJ25056.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans ATCC 51888] Length = 168 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 3/60 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + A +LG E L E + + I NV+ A A+ +Y A+ Sbjct: 101 FRHPLRAAYVLGPELGSLSEPLVERCDYVIKIPTRFCI---NVAMAGAIVMYDRVKSLAR 157 >gi|238854900|ref|ZP_04645230.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus jensenii 269-3] gi|260664187|ref|ZP_05865040.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US] gi|282931612|ref|ZP_06337105.1| rRNA methylase [Lactobacillus jensenii 208-1] gi|313472397|ref|ZP_07812889.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153] gi|238832690|gb|EEQ24997.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus jensenii 269-3] gi|239529739|gb|EEQ68740.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153] gi|260562073|gb|EEX28042.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US] gi|281304223|gb|EFA96332.1| rRNA methylase [Lactobacillus jensenii 208-1] Length = 185 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%) Query: 226 NDKIALILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 N + G E GL +E + M I+A N+SN+AA+ + Sbjct: 97 NKNYYFVFGKETTGLPETFMREYYDRNLRIPMSNHIRAYNLSNSAAMVIMEALRQ 151 >gi|219683043|ref|YP_002469426.1| RNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|219620693|gb|ACL28850.1| probable RNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] Length = 169 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 4/100 (4%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242 H + + + I ++ + K + L+ G E + Sbjct: 64 YHDMAHVVLHPNFEDLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGNIPDPM 123 Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M +++LN++N A++A+Y Sbjct: 124 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 163 >gi|183602131|ref|ZP_02963499.1| probable RNA methyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|241191363|ref|YP_002968757.1| hypothetical protein Balac_1346 [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196769|ref|YP_002970324.1| hypothetical protein Balat_1346 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218624|gb|EDT89267.1| probable RNA methyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|240249755|gb|ACS46695.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251323|gb|ACS48262.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177489|gb|ADC84735.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis BB-12] gi|295794356|gb|ADG33891.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium animalis subsp. lactis V9] Length = 223 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 4/100 (4%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242 H + + + I ++ + K + L+ G E + Sbjct: 118 YHDMAHVVLHPNFEDLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGNIPDPM 177 Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M +++LN++N A++A+Y Sbjct: 178 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 217 >gi|326478018|gb|EGE02028.1| RNA methyltransferase [Trichophyton equinum CBS 127.97] Length = 572 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 9/55 (16%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSNAAAVAL 273 L+LG EG GL+ K + A S + + +LNVS A+A+ Sbjct: 488 PCVLMLGGEGSGLQQKIKNRADSFVTIPGAYSANIRDDTAGVSSLNVSVASALLC 542 >gi|326473173|gb|EGD97182.1| hypothetical protein TESG_04597 [Trichophyton tonsurans CBS 112818] Length = 572 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 9/55 (16%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSNAAAVAL 273 L+LG EG GL+ K + A S + + +LNVS A+A+ Sbjct: 488 PCVLMLGGEGSGLQQKIKNRADSFVTIPGAYSANIRDDTAGVSSLNVSVASALLC 542 >gi|327308270|ref|XP_003238826.1| hypothetical protein TERG_00813 [Trichophyton rubrum CBS 118892] gi|326459082|gb|EGD84535.1| hypothetical protein TERG_00813 [Trichophyton rubrum CBS 118892] Length = 505 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 9/55 (16%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSNAAAVAL 273 L+LG EG GL+ K + A S + + +LNVS A+A+ Sbjct: 421 PCVLMLGGEGSGLQQKIKNRADSFVTIPGAYSANIRDDTAGVSSLNVSVASALLC 475 >gi|313139649|ref|ZP_07801842.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313132159|gb|EFR49776.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 216 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 4/100 (4%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242 H + + + I ++ + K + L+ G E + Sbjct: 111 YHDMAHVVLHPNFDNLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPM 170 Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M +++LN++N A++A+Y Sbjct: 171 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 210 >gi|310286958|ref|YP_003938216.1| RNA methyltransferase, SpoU rRNA Methylase family [Bifidobacterium bifidum S17] gi|309250894|gb|ADO52642.1| RNA methyltransferase, SpoU rRNA Methylase family [Bifidobacterium bifidum S17] Length = 215 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 4/100 (4%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242 H + + + I ++ + K + L+ G E + Sbjct: 110 YHDMAHVVLHPNFNNLVESMPDSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPM 169 Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M +++LN++N A++A+Y Sbjct: 170 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 209 >gi|302653550|ref|XP_003018599.1| RNA methyltransferase, TrmH family [Trichophyton verrucosum HKI 0517] gi|291182256|gb|EFE37954.1| RNA methyltransferase, TrmH family [Trichophyton verrucosum HKI 0517] Length = 573 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 9/55 (16%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSNAAAVAL 273 L+LG EG GL+ K + A S + + +LNVS A+A+ Sbjct: 489 PCVLMLGGEGSGLQQKIKNRADSFVTIPGAYSDNIRDDTAGVSSLNVSVASALLC 543 >gi|302504246|ref|XP_003014082.1| RNA methyltransferase, TrmH family [Arthroderma benhamiae CBS 112371] gi|291177649|gb|EFE33442.1| RNA methyltransferase, TrmH family [Arthroderma benhamiae CBS 112371] Length = 573 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 9/55 (16%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSNAAAVAL 273 L+LG EG GL+ K + A S + + +LNVS A+A+ Sbjct: 489 PCVLMLGGEGSGLQQKIKNRADSFVTIPGAYSDNIRDDTAGVSSLNVSVASALLC 543 >gi|224282497|ref|ZP_03645819.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium bifidum NCIMB 41171] gi|311063836|ref|YP_003970561.1| RNA methyltransferase [Bifidobacterium bifidum PRL2010] gi|310866155|gb|ADP35524.1| RNA methyltransferase [Bifidobacterium bifidum PRL2010] Length = 215 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 4/100 (4%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242 H + + + I ++ + K + L+ G E + Sbjct: 110 YHDMAHVVLHPNFDNLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPM 169 Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L M +++LN++N A++A+Y Sbjct: 170 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 209 >gi|21227939|ref|NP_633861.1| RNA methylase [Methanosarcina mazei Go1] gi|20906361|gb|AAM31533.1| RNA methylase [Methanosarcina mazei Go1] Length = 259 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 21/48 (43%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 IAL+ G E G + + + I +N+S+A A+ LY Sbjct: 118 IALLFGREDNGFSNDELKGFDMLVTVPTSEIYPIMNLSHAVAIVLYEL 165 >gi|325579151|ref|ZP_08149107.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392] gi|325159386|gb|EGC71520.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392] Length = 357 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 85/262 (32%), Gaps = 22/262 (8%) Query: 28 RDYKKMQSFNQK-----SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82 KK + + + ++ ++ +YG + I ++ AT R+ Sbjct: 100 PKEKKTGALSPRAPEKIKKNRAEEMK--VYGENACLELFAERPESIVRVWATVQMAHRIG 157 Query: 83 WDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMV 137 + L V V +V H G+ + + LD R L+V Sbjct: 158 EIFSYLATNKKVYHVVDSDELSLVSGTEHHGGICMLVKKQRIFSLQGYLDVPRQEDCLVV 217 Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197 LD VN+ N+G ++R+ + ++T + A + + G S Sbjct: 218 LDQVNNAQNLGGVVRTCAFYGIKNVVTNQVEQLYAPAAMRVAEGGMEHIRILETESTEIA 277 Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL--- 254 + ++ LEQ +K+AL+L +G ++ L Sbjct: 278 LEALRKAGYQIIHVSTNKQGVALEQLKFAEKVALVL---SEGSTDDIRDKQDVNVRLSLS 334 Query: 255 -HMPGIIKALNVSNAAAVALYI 275 + LN++ A + L Sbjct: 335 NPLKAG---LNIAVNAGILLSH 353 >gi|157803305|ref|YP_001491854.1| tRNA/rRNA methyltransferase [Rickettsia canadensis str. McKiel] gi|157784568|gb|ABV73069.1| tRNA/rRNA methyltransferase [Rickettsia canadensis str. McKiel] Length = 230 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 K+ ++ G E GL + A + ++ +LN++ A + Y +F Sbjct: 104 KVGIMFGRENNGLSNEEISLANKIITINTT-EFSSLNIAQAVIIICYELFRNFT 156 >gi|298712193|emb|CBJ33064.1| conserved unknown protein [Ectocarpus siliculosus] Length = 550 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 11/61 (18%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGI-----------IKALNVSNAAAVALYI 275 ++LG EG G+R + + G + +LNVS V L+ Sbjct: 475 PPTIVVLGNEGYGVRTNVLRECEFLVEVAGDGGGALAEGATPSTVDSLNVSVTGGVVLFH 534 Query: 276 T 276 Sbjct: 535 L 535 >gi|302384235|ref|YP_003820058.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides ATCC 15264] gi|302194863|gb|ADL02435.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides ATCC 15264] Length = 267 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 21/47 (44%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L+ G+E GL + + + ++LN++ A A+ Y + Sbjct: 115 LLFGSERAGLETSDIALCQGIVTIPIDPRHQSLNLAQAVAINAYEWR 161 >gi|322369305|ref|ZP_08043870.1| hypothetical protein ZOD2009_07449 [Haladaptatus paucihalophilus DX253] gi|320551037|gb|EFW92686.1| hypothetical protein ZOD2009_07449 [Haladaptatus paucihalophilus DX253] Length = 249 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 19/52 (36%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 LI G E GL + + + ALN+ AA V LY + Sbjct: 107 TTDTVLIFGREANGLTNEELSRIDEVCSIPASASYPALNLGQAATVTLYELR 158 >gi|332528697|ref|ZP_08404674.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624] gi|332041763|gb|EGI78112.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624] Length = 254 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 22/53 (41%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 IA + G+E G++ + A + +LN++ A V Y + + Sbjct: 117 IAFLFGSERYGMKNEDVYRAHVCLSIPTHPRFGSLNLAAALQVIAYEWRQALS 169 >gi|332283456|ref|YP_004415367.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7] gi|330427409|gb|AEC18743.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7] Length = 257 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 I ++ Q ++ ++A++LG E GL + + H+ +LNVS Sbjct: 97 CDIRKAAQVSCQHLQSTRHARVAIVLGTERSGLTNEDVALCQRICHIPANPEYSSLNVSQ 156 Query: 268 AAAVALYITQ 277 A +A + + Sbjct: 157 ALQLAAWELR 166 >gi|310823406|ref|YP_003955764.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca DW4/3-1] gi|309396478|gb|ADO73937.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca DW4/3-1] Length = 244 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++AL+LG E +GL + + + ++N++ AA V LY Sbjct: 108 RGRVALVLGGEQRGLSDAELAVCADVLVIPTSEVQPSMNLAQAAGVLLY 156 >gi|115372736|ref|ZP_01460042.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca DW4/3-1] gi|115370217|gb|EAU69146.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca DW4/3-1] Length = 218 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++AL+LG E +GL + + + ++N++ AA V LY Sbjct: 82 RGRVALVLGGEQRGLSDAELAVCADVLVIPTSEVQPSMNLAQAAGVLLY 130 >gi|322514554|ref|ZP_08067587.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Actinobacillus ureae ATCC 25976] gi|322119493|gb|EFX91580.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Actinobacillus ureae ATCC 25976] Length = 243 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+A++ G E GL + + +LN++ A +A Y + Sbjct: 108 QGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVR 159 >gi|108797462|ref|YP_637659.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS] gi|119866547|ref|YP_936499.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS] gi|108767881|gb|ABG06603.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS] gi|119692636|gb|ABL89709.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS] Length = 214 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + LI G EG G+ + A + G +++N + AA +A++ Sbjct: 149 HTDLPRECLLIFGQEGPGITEDAKTGARLTVSIAAFGSTRSINAAVAAGIAMH 201 >gi|255084469|ref|XP_002508809.1| predicted protein [Micromonas sp. RCC299] gi|226524086|gb|ACO70067.1| predicted protein [Micromonas sp. RCC299] Length = 312 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 1/98 (1%) Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239 + S+ + PL D+ +LG+E G Sbjct: 175 SDTTKTWTNLPMYSHDNWNAFAASAPYDAAWVAVEMGGAPLATFHHPDRAVYVLGSEDNG 234 Query: 240 LRPKTQETATSMAHLHM-PGIIKALNVSNAAAVALYIT 276 L + L G + NV+ A ++ +Y Sbjct: 235 LNSSVLRACAHVVELPAEVGRGASFNVAVAGSLVMYDR 272 >gi|327351571|gb|EGE80428.1| RNA methyltransferase [Ajellomyces dermatitidis ATCC 18188] Length = 596 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 9/55 (16%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSNAAAVAL 273 L+LG+E +GL+ ++ A + + +LNVS A+A+ Sbjct: 503 PCILMLGSEDQGLQRSVRQQADGAVVIPGAITLSSAEDRAGVDSLNVSVASALLC 557 >gi|301063433|ref|ZP_07203965.1| RNA methyltransferase, TrmH family, group 2 [delta proteobacterium NaphS2] gi|300442372|gb|EFK06605.1| RNA methyltransferase, TrmH family, group 2 [delta proteobacterium NaphS2] Length = 160 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 2/142 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P N G I R A + + L ++ ++ Sbjct: 8 LHVVLYQPEIPANTGNIARLCGAAQLRLHLIHPLGFSVDDKHLKRAGLDYWP-DIDVQHH 66 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 DA + S + Q N L+ G E GL + + A Sbjct: 67 ANFDAFLDGMHENARLFCFSRHASTVYPQAKVNRGDYLLFGRETLGLPLEIR-NAYPCYR 125 Query: 254 LHMPGIIKALNVSNAAAVALYI 275 + + G +++LN+S + Y Sbjct: 126 VPIWGKVRSLNLSTTVGIVSYH 147 >gi|239606661|gb|EEQ83648.1| RNA methyltransferase [Ajellomyces dermatitidis ER-3] Length = 522 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 9/55 (16%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSNAAAVAL 273 L+LG+E +GL+ ++ A + + +LNVS A+A+ Sbjct: 429 PCILMLGSEDQGLQRSVRQQADGAVVIPGAITLSSAEDRAGVDSLNVSVASALLC 483 >gi|261197279|ref|XP_002625042.1| RNA methyltransferase [Ajellomyces dermatitidis SLH14081] gi|239595672|gb|EEQ78253.1| RNA methyltransferase [Ajellomyces dermatitidis SLH14081] Length = 522 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 9/55 (16%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSNAAAVAL 273 L+LG+E +GL+ ++ A + + +LNVS A+A+ Sbjct: 429 PCILMLGSEDQGLQRSVRQQADGAVVIPGAITLSSAEDRAGVDSLNVSVASALLC 483 >gi|126178718|ref|YP_001046683.1| RNA methyltransferase [Methanoculleus marisnigri JR1] gi|125861512|gb|ABN56701.1| RNA methyltransferase, TrmH family, group 1 [Methanoculleus marisnigri JR1] Length = 232 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 21/50 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +A++ G E GL A + + I LN+S+A + Y N Sbjct: 109 VAILFGRENWGLANTELARANLICTIPTSEIYPILNLSHAVGILCYELAN 158 >gi|294790555|ref|ZP_06755713.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304] gi|294458452|gb|EFG26805.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304] Length = 276 Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 3/173 (1%) Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 P +D + T + LD + +++ NIG+I+R+A Sbjct: 89 VFDPDLLDN-GDSRNIMDRYRYWTVDAIKADLDRRGRHSFEVAIENWTHDFNIGSIVRTA 147 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 AF+ G+ + + L ++++ I + S + Sbjct: 148 NAFTARGVHIIGPHKWNRKGSLMTELYQSVDYYASIDEFVHAVRTRDQESGQHTRLIALD 207 Query: 215 DSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + E L+ GAEG GL + E A + ++ G +++LN Sbjct: 208 IVPGAVPIESYQFPEQCILLFGAEGPGLTSRALEIADDVVYITQYGSVRSLNA 260 >gi|257453749|ref|ZP_05619030.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Enhydrobacter aerosaccus SK60] gi|257448841|gb|EEV23803.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Enhydrobacter aerosaccus SK60] Length = 278 Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 3/108 (2%) Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 ++ A + + L + + + +N ++A Sbjct: 81 CDTLEQALQDCHWVIATSSRQRHIPRPVLSPRQAAELMVTNFHNLGDLMTDAAHRNWQLA 140 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV---ALYI 275 ++ G E +GL + + A + LNV+ A V Y Sbjct: 141 IVFGREDRGLTNEELQLADYHIQIPANAEYGVLNVAAAVQVIASVFYE 188 >gi|225469103|ref|XP_002269052.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 845 Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 21/50 (42%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + + L+LG E +G+ + + G++++LNV + Sbjct: 5 CGMVMFFTCLVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSG 54 >gi|303251299|ref|ZP_07337477.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252468|ref|ZP_07534364.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649841|gb|EFL80019.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860060|gb|EFM92077.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 242 Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+A++ G E GL + + +LN++ A +A Y + Sbjct: 108 KGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVR 159 >gi|165976260|ref|YP_001651853.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307250079|ref|ZP_07532042.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|165876361|gb|ABY69409.1| probable tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306857876|gb|EFM89969.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 242 Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+A++ G E GL + + +LN++ A +A Y + Sbjct: 108 KGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVR 159 >gi|126433083|ref|YP_001068774.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] gi|126232883|gb|ABN96283.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] Length = 214 Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + LI G EG G+ + A + G +++N + AA +A++ Sbjct: 149 HTDLPRECLLIFGQEGPGITDDAKTGARLTVSIAAFGSTRSINAAVAAGIAMH 201 >gi|319935054|ref|ZP_08009497.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1] gi|319810072|gb|EFW06441.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1] Length = 147 Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 6/144 (4%) Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201 D N+G ++R+ + F ++ + + +++ GA+ H+ N Q+ Sbjct: 1 MDMGNMGTMMRTMLGFGYLHLVIIRPAVDIFDPKVIRASMGAIFHLNIQYYDNFESYYQE 60 Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 F L L+ G E GL + I Sbjct: 61 YKYHEFYPFMLKGAKNIHQISTNNVHS--LVFGNESSGLDDTYLNYG-QSVFIPHSETID 117 Query: 262 ALNVSNAAAVALYITQN---HFAK 282 +LN+S A + L+ + Sbjct: 118 SLNLSMALGLTLFHFSKEQFQRKE 141 >gi|167647484|ref|YP_001685147.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31] gi|167349914|gb|ABZ72649.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31] Length = 266 Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 21/47 (44%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 L+ G E GL ++ + + ++LN++ A ++ Y + Sbjct: 116 LLFGGERAGLETDDIALCQAIISIPIDERFRSLNLAQAVSINAYEWK 162 >gi|163749011|ref|ZP_02156262.1| putative RNA methyltransferase [Shewanella benthica KT99] gi|161331387|gb|EDQ02275.1| putative RNA methyltransferase [Shewanella benthica KT99] Length = 229 Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 3/58 (5%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV---ALYITQNHFA 281 KIAL+ G E GL E +++ + +LN++ A V AL N Sbjct: 106 KKIALLFGRESSGLSNSELELCDLFSYVPLINDYPSLNLAQAVMVYSYALSEVNNRLK 163 >gi|257783855|ref|YP_003179072.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469] gi|257472362|gb|ACV50481.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469] Length = 220 Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 30/119 (25%), Gaps = 45/119 (37%) Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKAL-- 263 L+ +KK Q D LI G E GL + + A + M +L Sbjct: 95 PHLHFLTKKAKKTYTQATYRDGDYLIFGKESLGLSEELLAKHADECERIPMLQDSVSLVN 154 Query: 264 ------------------------------------------NVSNAAAVALYITQNHF 280 NVSNAAA+ LY Sbjct: 155 REDWSQKHDALDGGGQYSHPVLLQQDICGNFIDPNEFSVSALNVSNAAAIVLYEALRQI 213 >gi|300869138|ref|ZP_07113736.1| Heat shock protein DnaJ-like protein (modular protein) [Oscillatoria sp. PCC 6506] gi|300332865|emb|CBN58934.1| Heat shock protein DnaJ-like protein (modular protein) [Oscillatoria sp. PCC 6506] Length = 517 Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 8/195 (4%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDW 83 + K+++ + S+ + L G H + A +P + + +L Sbjct: 6 QNPLVKEIRKLHA-SKGRREQGFFLLEGTHLLEEACAQKHPLATVCYTSEWQERHPQLWK 64 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 L V+ V + ++ I A A + +V + L + L+ V D Sbjct: 65 KVCLQAR-RVELVSDRVLEAI----ATTVQPDGAIATAPRSEMQSVATASLGLALETVQD 119 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 P N+G I+R+A A DG+ + + + +S++GA +P +L + + Sbjct: 120 PGNLGTIIRTAAAAGADGLWLSGDSVDLDHPKVLRSSAGAWFRLPMAVTYDLKAEISRCQ 179 Query: 204 SWGFQTIGLSSDSKK 218 G Q + K Sbjct: 180 HQGMQNFRNFTRCKF 194 >gi|254709300|ref|ZP_05171111.1| putative SAM dependent methyltransferase [Brucella pinnipedialis B2/94] gi|256030823|ref|ZP_05444437.1| putative SAM dependent methyltransferase [Brucella pinnipedialis M292/94/1] gi|261316809|ref|ZP_05956006.1| SAM dependent methyltransferase [Brucella pinnipedialis B2/94] gi|261296032|gb|EEX99528.1| SAM dependent methyltransferase [Brucella pinnipedialis B2/94] Length = 433 Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 23/87 (26%), Gaps = 4/87 (4%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K ++S K + Q G+ V AL R + + Sbjct: 348 NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFDKSGKGNKTVEQVA 406 Query: 87 L---PHPFPVKTVPPQTIDKIVGKEAV 110 V V + I I ++ Sbjct: 407 ARTFAKDGLVLEVTEKVISAITRRDNP 433 >gi|325972741|ref|YP_004248932.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy] gi|324027979|gb|ADY14738.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy] Length = 266 Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATS---MAHLHMPGIIKALNVSNAAAVALY 274 K ++G+E G+ P + + G +LNV+ AA + ++ Sbjct: 207 FSFPPKGIAVIGSEELGVSPALLGACEASMGRLTIAQAGTKGSLNVAVAAGIMMH 261 >gi|323454345|gb|EGB10215.1| hypothetical protein AURANDRAFT_15819 [Aureococcus anophagefferens] Length = 178 Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +AL+LG E G+ ++ + G ++NV+ AA ++ Sbjct: 126 VALVLGNEVTGVDGAVLPLVDAVVEIPTFGTKNSMNVACAATTVIFDVLRR 176 >gi|118579084|ref|YP_900334.1| RNA methyltransferase [Pelobacter propionicus DSM 2379] gi|118501794|gb|ABK98276.1| RNA methyltransferase, TrmH family, group 1 [Pelobacter propionicus DSM 2379] Length = 251 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 19/51 (37%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + AL+ G E GL A + +LN+S A + Y Sbjct: 114 DCRGALVFGREDSGLTTDELSLCRWHATIPTSSEYGSLNLSQAVLLFCYEL 164 >gi|307256894|ref|ZP_07538672.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864628|gb|EFM96533.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 242 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+A++ G E GL + + +LN++ A +A Y + Sbjct: 108 KGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVR 159 >gi|261493539|ref|ZP_05990059.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495378|ref|ZP_05991826.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308883|gb|EEY10138.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310721|gb|EEY11904.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 238 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 21/51 (41%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+A++ G E GL + + +LN++ A +A Y + Sbjct: 109 GKVAIVFGRERVGLTNEELLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIR 159 >gi|254361622|ref|ZP_04977760.1| rRNA methyltransferase [Mannheimia haemolytica PHL213] gi|153093140|gb|EDN74156.1| rRNA methyltransferase [Mannheimia haemolytica PHL213] Length = 238 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 21/51 (41%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+A++ G E GL + + +LN++ A +A Y + Sbjct: 109 GKVAIVFGRERVGLTNEELLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIR 159 >gi|218296368|ref|ZP_03497111.1| RNA methyltransferase, TrmH family, group 1 [Thermus aquaticus Y51MC23] gi|218243162|gb|EED09693.1| RNA methyltransferase, TrmH family, group 1 [Thermus aquaticus Y51MC23] Length = 244 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 20/50 (40%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +AL+ G E GL + A + + +LN++ A V Y Sbjct: 115 VALVFGRETFGLTNEELALAHVIGTIPTAPEQPSLNLAQAVVVFAYELFK 164 >gi|326795561|ref|YP_004313381.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas mediterranea MMB-1] gi|326546325|gb|ADZ91545.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas mediterranea MMB-1] Length = 252 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 26/75 (34%) Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 H I + + + + E K +A++ G E GL + ++ Sbjct: 83 HRTFQLPIMNARECAETVIPEAKQHDVAIVFGRETTGLLNEEIAQCHRQVYIDANDEYPV 142 Query: 263 LNVSNAAAVALYITQ 277 LN+S A + Y Sbjct: 143 LNISQAVQIVAYEIW 157 >gi|319779345|ref|YP_004130258.1| tRNA:Cm32/Um32 methyltransferase [Taylorella equigenitalis MCE9] gi|317109369|gb|ADU92115.1| tRNA:Cm32/Um32 methyltransferase [Taylorella equigenitalis MCE9] Length = 237 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 4/67 (5%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ- 277 E KN IA+++G E GL + + + +LNV+ A + + + Sbjct: 96 NHLIESKNHNIAIVMGNEQSGLDNNSLYNFNYIVSIPANPEYSSLNVAQALQITAWELRY 155 Query: 278 ---NHFA 281 N Sbjct: 156 KYINQLN 162 >gi|329296939|ref|ZP_08254275.1| putative RNA methyltransferase [Plautia stali symbiont] Length = 228 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++IAL+ G E GL + E + + M +LN+ A V Y Sbjct: 103 QWLNRIALVFGREDSGLTNEELEQVDLLTGIPMAQDYPSLNLGQAVMVYCYQL 155 >gi|167947103|ref|ZP_02534177.1| hypothetical protein Epers_11372 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 64 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 7/29 (24%), Positives = 15/29 (51%) Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G +++LNV+ AA+V ++ Sbjct: 25 CLSIPQFGQVESLNVAVAASVVMFEYVRQ 53 >gi|307261328|ref|ZP_07543003.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869059|gb|EFN00861.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 243 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+A++ G E GL + + +LN++ A +A Y + Sbjct: 108 QGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVR 159 >gi|303252841|ref|ZP_07339000.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247831|ref|ZP_07529867.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648271|gb|EFL78468.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855633|gb|EFM87800.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 243 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+A++ G E GL + + +LN++ A +A Y + Sbjct: 108 KGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVR 159 >gi|83945697|ref|ZP_00958042.1| putative RNA methyltransferase, TrmH family protein [Oceanicaulis alexandrii HTCC2633] gi|83850898|gb|EAP88758.1| putative RNA methyltransferase, TrmH family protein [Oceanicaulis alexandrii HTCC2633] Length = 173 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 28/102 (27%), Gaps = 3/102 (2%) Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 A T + +D L A +LG Sbjct: 43 REMFQTDTAKTTENLPYYDWETVDDMALPRGCQIVGVELTDDAVELPSFRHPRMAAYVLG 102 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 E L P+ E + + + N+S AAA+ALY Sbjct: 103 KERGDLSPEMLERCAHVVKIPTKFCV---NLSVAAAIALYDR 141 >gi|332299114|ref|YP_004441036.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM 12168] gi|332182217|gb|AEE17905.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM 12168] Length = 273 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATS-MAHLHMPGIIKALNVSNAAAVAL 273 + +++G+E G+ P+ + T + M G+ +LNV A + + Sbjct: 212 FAFPREGIVVIGSEELGVSPEALKRGTYGRVSIPMKGLKASLNVGVAFGILM 263 >gi|256851486|ref|ZP_05556875.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN] gi|260660907|ref|ZP_05861822.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN] gi|282933486|ref|ZP_06338862.1| rRNA methylase [Lactobacillus jensenii 208-1] gi|297206301|ref|ZP_06923696.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16] gi|256616548|gb|EEU21736.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN] gi|260548629|gb|EEX24604.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN] gi|281302417|gb|EFA94643.1| rRNA methylase [Lactobacillus jensenii 208-1] gi|297149427|gb|EFH29725.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16] Length = 185 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%) Query: 226 NDKIALILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 N + G E GL +E + M I+A N+SN+AA+ + Sbjct: 97 NKNYYFVFGKETTGLPETFMREYYDRNLRIPMSDHIRAYNLSNSAAMVIMEALRQ 151 >gi|67459564|ref|YP_247188.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2] gi|67005097|gb|AAY62023.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2] Length = 231 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/102 (12%), Positives = 29/102 (28%), Gaps = 1/102 (0%) Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 A + + L S+ + K+ ++ G E Sbjct: 54 NIIDNAKVYDSLEDCIKDLEYLYATTCIKRAMNKDYVFSQNLPLDYPNSAKVGIMFGREN 113 Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 GL + A + ++ +LN++ A + Y + Sbjct: 114 NGLSNEEISLANKIITINTT-EFSSLNIAQAVIIICYELFRN 154 >gi|269137921|ref|YP_003294621.1| hypothetical tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202] gi|267983581|gb|ACY83410.1| hypothetical tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202] gi|304557972|gb|ADM40636.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda FL6-60] Length = 235 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 20/71 (28%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 E++ AL+ G E GL + + M +LN+ Sbjct: 85 FHYYCTPQELCAVLQEKQRWMASCALVFGREDSGLTNDELALVDLLTGVPMAADYPSLNL 144 Query: 266 SNAAAVALYIT 276 A V Y Sbjct: 145 GQAVMVFCYQL 155 >gi|332678594|gb|AEE87723.1| tRNA:Cm32/Um32 methyltransferase [Francisella cf. novicida Fx1] Length = 247 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++KIA++ G E GL + + A++ +LN++ A + Y Sbjct: 111 DEKIAILFGRERTGLLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQ 164 >gi|190150169|ref|YP_001968694.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263508|ref|ZP_07545123.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915300|gb|ACE61552.1| hypothetical tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871151|gb|EFN02880.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 243 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+A++ G E GL + + +LN++ A +A Y + Sbjct: 108 KGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVR 159 >gi|73669106|ref|YP_305121.1| SpoU rRNA methylase [Methanosarcina barkeri str. Fusaro] gi|72396268|gb|AAZ70541.1| SpoU rRNA methylase [Methanosarcina barkeri str. Fusaro] Length = 243 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + IA++ G E G R ++ + + I +N+S+A AV LY Sbjct: 110 YSGTIAILFGREDTGFRNDELKSFDMLFTIPTSEIYPIMNLSHAVAVVLYEL 161 >gi|300715247|ref|YP_003740050.1| RNA methyltransferase [Erwinia billingiae Eb661] gi|299061083|emb|CAX58190.1| RNA methyltransferase [Erwinia billingiae Eb661] Length = 233 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 2/58 (3%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNH 279 AL+ G E GL + + + M +LN+ A V Y Sbjct: 103 QWVQSAALVFGREDTGLTNEELALVDVLTGIPMAADYPSLNLGQAVMVYCYQLSALRQ 160 >gi|46143391|ref|ZP_00135323.2| COG0565: rRNA methylase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208319|ref|YP_001053544.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae L20] gi|126097111|gb|ABN73939.1| hypothetical tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 243 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+A++ G E GL + + +LN++ A +A Y + Sbjct: 108 KGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVR 159 >gi|70914349|ref|XP_731810.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56502066|emb|CAH84226.1| hypothetical protein PC300919.00.0 [Plasmodium chabaudi chabaudi] Length = 118 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 23/48 (47%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 I +K LILG E +GL + GII++LNV +AA Sbjct: 71 FIFPEKCILILGDEKEGLPSSILLLLHHCVEIPGHGIIRSLNVHVSAA 118 >gi|50085211|ref|YP_046721.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] gi|49531187|emb|CAG68899.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] Length = 271 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA++ G E +GL + A + + LNV+ A V Y + Sbjct: 110 IAIVFGREDRGLTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMR 158 >gi|307254675|ref|ZP_07536503.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259119|ref|ZP_07540849.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306862348|gb|EFM94314.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866786|gb|EFM98644.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 243 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+A++ G E GL + + +LN++ A +A Y + Sbjct: 108 KGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVR 159 >gi|87121814|ref|ZP_01077700.1| putative rRNA methylase [Marinomonas sp. MED121] gi|86162843|gb|EAQ64122.1| putative rRNA methylase [Marinomonas sp. MED121] Length = 247 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 18/52 (34%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N IA++ G E GL ++ LN+S A + Y Sbjct: 106 NQPIAIVFGREKTGLLNDEIAQCHRQVYIDANDEYPVLNISQAVQIVAYEIW 157 >gi|225022536|ref|ZP_03711728.1| hypothetical protein CORMATOL_02576 [Corynebacterium matruchotii ATCC 33806] gi|305680279|ref|ZP_07403087.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii ATCC 14266] gi|224944659|gb|EEG25868.1| hypothetical protein CORMATOL_02576 [Corynebacterium matruchotii ATCC 33806] gi|305659810|gb|EFM49309.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii ATCC 14266] Length = 230 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 4/150 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L + +++ + NIG ++R+A AF+ D + R + + L H Sbjct: 77 RRHALHIAIENFENDANIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLLHHDT 136 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 A + S + + L+ G EG G+ Q A Sbjct: 137 TDSVVAWAAEHGLTVVAIDNTPGSVPLET----VELPKRCLLLFGQEGPGVTAAAQAAAV 192 Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G +++N AA +A++ Sbjct: 193 MTCSIAQFGSTRSINAGVAAGIAMHAWIRQ 222 >gi|219851926|ref|YP_002466358.1| RNA methyltransferase, TrmH family, group 1 [Methanosphaerula palustris E1-9c] gi|219546185|gb|ACL16635.1| RNA methyltransferase, TrmH family, group 1 [Methanosphaerula palustris E1-9c] Length = 249 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 23/73 (31%) Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + S+ + I+++ G E GL + + + LN Sbjct: 85 CNPMRMPYYEPSEIRSMIAEIDGTISILFGRENWGLNNGEVAASDLICTIPTSPEYPILN 144 Query: 265 VSNAAAVALYITQ 277 +S+A + Y Sbjct: 145 LSHAVGLVCYELA 157 >gi|11499390|ref|NP_070629.1| hypothetical protein AF1801 [Archaeoglobus fulgidus DSM 4304] gi|2648747|gb|AAB89450.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 226 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY---ITQN 278 ++A++ G E GL + E + + +NVS+AAAV LY + Sbjct: 96 KGRVAVLFGREDYGLYNEELEMCHVLVRVPTSEEYPVMNVSHAAAVILYFLREIER 151 >gi|39996575|ref|NP_952526.1| RNA methyltransferase [Geobacter sulfurreducens PCA] gi|39983456|gb|AAR34849.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sulfurreducens PCA] gi|298505591|gb|ADI84314.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter sulfurreducens KN400] Length = 255 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 19/50 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ AL+ G E GL A + +LN++ A V Y Sbjct: 118 NRAALVFGREDNGLTTDELSLCRWHATIPSSEEYGSLNLAQAVMVFCYEL 167 >gi|307245706|ref|ZP_07527792.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306853408|gb|EFM85627.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 243 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+A++ G E GL + + +LN++ A +A Y + Sbjct: 108 KGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVR 159 >gi|227496859|ref|ZP_03927124.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces urogenitalis DSM 15434] gi|226833642|gb|EEH66025.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces urogenitalis DSM 15434] Length = 225 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 22/44 (50%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 ++ L+ G+EG+G+ + + T + + G +++NV Sbjct: 161 HAQLPERCLLVFGSEGEGISEELRAGCTRLLRIGQYGSTRSINV 204 >gi|110834589|ref|YP_693448.1| putative RNA methyltransferase [Alcanivorax borkumensis SK2] gi|110647700|emb|CAL17176.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax borkumensis SK2] Length = 223 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 21/53 (39%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++A++ G E GL + + + +LN++ A + + + Sbjct: 104 QRVAIVFGREASGLTGDELGLCDLASSIPLAQQQPSLNLAQAVMIYAWELRKQ 156 >gi|221194595|ref|ZP_03567652.1| RNA methyltransferase, TrmH family [Atopobium rimae ATCC 49626] gi|221185499|gb|EEE17889.1| RNA methyltransferase, TrmH family [Atopobium rimae ATCC 49626] Length = 220 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 25/106 (23%), Gaps = 45/106 (42%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKAL--------------- 263 Q D LI G E GL + + A + M +L Sbjct: 108 YTQATYRDGDYLIFGKESLGLSEELLAKYADECERIPMLQDSVSLVNREDWSQKHDALDG 167 Query: 264 -----------------------------NVSNAAAVALYITQNHF 280 NVSNAAA+ LY Sbjct: 168 EDQYSHPVLLQQDICGNFIDPNEFSVSALNVSNAAAIVLYEALRQI 213 >gi|254374689|ref|ZP_04990170.1| hypothetical protein FTDG_00864 [Francisella novicida GA99-3548] gi|151572408|gb|EDN38062.1| hypothetical protein FTDG_00864 [Francisella novicida GA99-3548] Length = 247 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++KIA++ G E GL + + A++ +LN++ A + Y Sbjct: 111 DEKIAILFGRERTGLLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQ 164 >gi|308181009|ref|YP_003925137.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046500|gb|ADN99043.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 170 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 231 LILGAEGKGLRP-KTQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + G E GL ++ + I+ALN+SN+AA+ +Y Sbjct: 102 FLFGKETTGLPEPFMRKYPEKAIRIPQDDSHIRALNLSNSAAIVIYEALRQ 152 >gi|300768854|ref|ZP_07078748.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493587|gb|EFK28761.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 175 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 231 LILGAEGKGLRP-KTQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + G E GL ++ + I+ALN+SN+AA+ +Y Sbjct: 107 FLFGKETTGLPEPFMRKYPEKAIRIPQDDSHIRALNLSNSAAIVIYEALRQ 157 >gi|167627612|ref|YP_001678112.1| rRNA methylase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241668183|ref|ZP_04755761.1| rRNA methylase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876718|ref|ZP_05249428.1| rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|167597613|gb|ABZ87611.1| rRNA methylase, SpoU family [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254842739|gb|EET21153.1| rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 249 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++KIA++ G E GL + + A++ +LN++ A + Y Sbjct: 111 DEKIAILFGRERTGLLNEELLMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQ 164 >gi|28378810|ref|NP_785702.1| rRNA methyltransferase [Lactobacillus plantarum WCFS1] gi|254557015|ref|YP_003063432.1| rRNA methyltransferase [Lactobacillus plantarum JDM1] gi|28271647|emb|CAD64553.1| rRNA methyltransferase [Lactobacillus plantarum WCFS1] gi|254045942|gb|ACT62735.1| rRNA methyltransferase [Lactobacillus plantarum JDM1] Length = 170 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 231 LILGAEGKGLRP-KTQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + G E GL ++ + I+ALN+SN+AA+ +Y Sbjct: 102 FLFGKETTGLPEPFMRKYPEKAIRIPQDDSHIRALNLSNSAAIVIYEALRQ 152 >gi|208779944|ref|ZP_03247288.1| RNA methyltransferase, TrmH family, group 1 [Francisella novicida FTG] gi|208744399|gb|EDZ90699.1| RNA methyltransferase, TrmH family, group 1 [Francisella novicida FTG] Length = 247 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++KIA++ G E GL + + A++ +LN++ A + Y Sbjct: 111 DEKIAILFGRERTGLLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQ 164 >gi|319940963|ref|ZP_08015300.1| hypothetical protein HMPREF9464_00519 [Sutterella wadsworthensis 3_1_45B] gi|319805536|gb|EFW02331.1| hypothetical protein HMPREF9464_00519 [Sutterella wadsworthensis 3_1_45B] Length = 288 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 20/53 (37%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 IA + G E GL + A + +LN+S A +A Y Q Sbjct: 116 LEGSIAFVFGTERSGLTNEEVCLCQGCAAIPADPASPSLNLSQAVQIAAYEMQ 168 >gi|332184413|gb|AEE26667.1| tRNA:Cm32/Um32 methyltransferase [Francisella cf. novicida 3523] Length = 249 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 24/54 (44%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++K+A++ G E GL + + A++ +LN++ A + Y Sbjct: 111 DEKVAILFGRERTGLLNEELLMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQ 164 >gi|319943416|ref|ZP_08017698.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Lautropia mirabilis ATCC 51599] gi|319743231|gb|EFV95636.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Lautropia mirabilis ATCC 51599] Length = 324 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 18/52 (34%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++A + G E GL + +LN++ A + + + Sbjct: 145 QRVAFVFGTERTGLGTAEMARCQRWLTIPADADYSSLNLAQAVQIVAFSLRR 196 >gi|118497879|ref|YP_898929.1| rRNA methylase [Francisella tularensis subsp. novicida U112] gi|194323852|ref|ZP_03057628.1| RNA methyltransferase, TrmH family, group 1 [Francisella tularensis subsp. novicida FTE] gi|118423785|gb|ABK90175.1| rRNA methylase, SpoU family [Francisella novicida U112] gi|194322216|gb|EDX19698.1| RNA methyltransferase, TrmH family, group 1 [Francisella tularensis subsp. novicida FTE] Length = 247 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++KIA++ G E GL + + A++ +LN++ A + Y Sbjct: 111 DEKIAILFGRERTGLLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQ 164 >gi|90962111|ref|YP_536027.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118] gi|227891134|ref|ZP_04008939.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741] gi|301301375|ref|ZP_07207517.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821305|gb|ABD99944.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118] gi|227867008|gb|EEJ74429.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741] gi|300214798|gb|ADJ79214.1| 23S ribosomal RNA methyltransferase [Lactobacillus salivarius CECT 5713] gi|300851035|gb|EFK78777.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus salivarius ACS-116-V-Col5a] Length = 170 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Query: 231 LILGAEGKGLRP-KTQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + G E GL ++ + I+ALN+SN AA+ +Y Sbjct: 102 FLFGKETTGLPEMFMRQNPEKCIRIPQNDEHIRALNLSNTAAIVVYEALRQ 152 >gi|238650706|ref|YP_002916559.1| rRNA methylase [Rickettsia peacockii str. Rustic] gi|238624804|gb|ACR47510.1| rRNA methylase [Rickettsia peacockii str. Rustic] Length = 230 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++K+ ++ G E GL + A + ++ +LN++ A + Y + Sbjct: 102 SEKVGIMFGRENNGLSNEEIAFANKIITINTT-EFSSLNIAQAVIIICYELLRN 154 >gi|229586358|ref|YP_002844859.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5] gi|228021408|gb|ACP53116.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5] Length = 230 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++K+ ++ G E GL + A + ++ +LN++ A + Y + Sbjct: 102 SEKVGIMFGRENNGLSNEEIAFANKIITINTT-EFSSLNIAQAVIIICYELLRN 154 >gi|261823098|ref|YP_003261204.1| RNA methyltransferase [Pectobacterium wasabiae WPP163] gi|261607111|gb|ACX89597.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium wasabiae WPP163] Length = 228 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 20/55 (36%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + E A + + M +LN+ A V Y Sbjct: 102 IQWMASAALVFGREDTGLTNEELELADVLTGVPMKADYPSLNLGQAVMVFCYQLA 156 >gi|71083833|ref|YP_266553.1| SpoU rRNA methylase family [Candidatus Pelagibacter ubique HTCC1062] gi|71062946|gb|AAZ21949.1| SpoU rRNA Methylase family [Candidatus Pelagibacter ubique HTCC1062] Length = 237 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 22/52 (42%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 N KIA + G+E GL A + K+LN+S++ + + Sbjct: 101 IDFNKKIAFLFGSEASGLSNNEISYANYTMQIPTNPDFKSLNLSHSVIIIAH 152 >gi|76799750|ref|ZP_00781835.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus agalactiae 18RS21] gi|76584896|gb|EAO61569.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus agalactiae 18RS21] Length = 68 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Query: 232 ILGAEGKGLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279 + G E KGL +E A + M +++LNVSN + +Y Sbjct: 1 MFGREDKGLPETFMREHAEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQ 50 >gi|123966380|ref|YP_001011461.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9515] gi|123200746|gb|ABM72354.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9515] Length = 236 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +A++ G E +GL A + ++ +LN+S+A A+ LY Sbjct: 101 NNLAILFGREDRGLTNSELLFAHKIFNIKTSQDYPSLNLSHAVAIILYELNK 152 >gi|254432233|ref|ZP_05045936.1| RNA methyltransferase, TrmH family, group 1 [Cyanobium sp. PCC 7001] gi|197626686|gb|EDY39245.1| RNA methyltransferase, TrmH family, group 1 [Cyanobium sp. PCC 7001] Length = 255 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 24/51 (47%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +AL+ G E +GL A + L +LN+S+A A+AL+ Sbjct: 110 VALVFGREDRGLSNGELLQAGHLLTLPTAAAYTSLNLSHAVALALHAWHGQ 160 >gi|91763130|ref|ZP_01265094.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique HTCC1002] gi|91717543|gb|EAS84194.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique HTCC1002] Length = 237 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 22/52 (42%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 N KIA + G+E GL A + K+LN+S++ + + Sbjct: 101 IDFNKKIAFLFGSEASGLSNNEISYANYTMQIPTNPDFKSLNLSHSVIIIAH 152 >gi|293390750|ref|ZP_06635084.1| ATP-dependent RNA helicase SrmB [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951284|gb|EFE01403.1| ATP-dependent RNA helicase SrmB [Aggregatibacter actinomycetemcomitans D7S-1] Length = 358 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 83/262 (31%), Gaps = 22/262 (8%) Query: 26 NHRDYKKMQSFNQK-----SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 + KK + + ++ ++ +YG A I +L AT + Sbjct: 99 DKPREKKTGPLSPRAPEKIKKNRAEEMK--VYGESACFALFEQRPASIVRLWATVQMAHK 156 Query: 81 LDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL----DAVRNSQLL 135 + + L V + V H G+ + TL D L Sbjct: 157 IGDICSYLAANKKVYHIVESDELTKVSGTEHHGGICMLVKKSHPFTLQGYLDVPHQEDCL 216 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD VN+ NIG ILR+ F ++ + S + + L + GA Sbjct: 217 VLLDGVNNAQNIGGILRTCAFFGVKNMVVEEAESLNSAVTLRVAEGGAEYVRVLETDDTR 276 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL- 254 Q H+ + + L++ +K +L +G E + L Sbjct: 277 NALAQLRHAGYQIIHVSNDKNATALDKVRLKNKTVFVL---SEGSTETLAEKSDEQVRLS 333 Query: 255 ---HMPGIIKALNVSNAAAVAL 273 + LNVS A + L Sbjct: 334 FGNPLKNG---LNVSVNAGILL 352 >gi|145350311|ref|XP_001419555.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579787|gb|ABO97848.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 311 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 21/92 (22%), Gaps = 1/92 (1%) Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 S PLE ILG+E GL Sbjct: 185 WTQIPTFEYSDWDDFVRKSPVSAVWVGVEMGGTPLENFEHPRNAVYILGSEDTGLNTTML 244 Query: 246 ETATSMAHLHMPG-IIKALNVSNAAAVALYIT 276 L G + NV+ A+ +Y Sbjct: 245 RACQHHIALPTTGTRSPSFNVAVTGAIIMYDR 276 >gi|15892083|ref|NP_359797.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7] gi|15619205|gb|AAL02698.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7] Length = 221 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++K+ ++ G E GL + A + ++ +LN++ A + Y + Sbjct: 102 SEKVGIMFGRENNGLSNEEIAFANKIITINTT-EFSSLNIAQAVIIICYELLRN 154 >gi|326433369|gb|EGD78939.1| hypothetical protein PTSG_01913 [Salpingoeca sp. ATCC 50818] Length = 381 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 6/55 (10%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGI--IKALNVSNAAAVALYITQ----NH 279 L++G E +G+ + T+ + + +LNV AA + ++ Sbjct: 325 LVVGNEHRGIHANVVDACTATLAVDQHRSHLVDSLNVGVAAGILIHAIALWLHRQ 379 >gi|33861612|ref|NP_893173.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634189|emb|CAE19515.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 247 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + ++ G E +GL A + ++ +LN+S+A ++ LY Sbjct: 112 NNLGILFGREDRGLSNNELLFAHKILNIKTSQNYPSLNLSHAVSIILYELNK 163 >gi|319794743|ref|YP_004156383.1| RNA methyltransferase, trmh family, group 1 [Variovorax paradoxus EPS] gi|315597206|gb|ADU38272.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus EPS] Length = 247 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 19/51 (37%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G+E G+R + + +LN+ A V Y + Sbjct: 108 QHVAFLFGSERFGMRNEDVYRCNVALSIPTDPKFGSLNLGAAIQVVAYEWR 158 >gi|239816538|ref|YP_002945448.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus S110] gi|239803115|gb|ACS20182.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus S110] Length = 243 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 19/51 (37%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G+E G+R + + +LN+ A V Y + Sbjct: 107 QHVAFLFGSERFGMRNEDVYRCNVALSIPTDPKFGSLNLGAAIQVVAYEWR 157 >gi|255084313|ref|XP_002508731.1| predicted protein [Micromonas sp. RCC299] gi|226524008|gb|ACO69989.1| predicted protein [Micromonas sp. RCC299] Length = 506 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 15/67 (22%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---------------IIKALNVSNAA 269 K K+A++ G E GL + A + + G +LN+S A Sbjct: 243 KRGKVAVLFGNERTGLTNEELAQAHACVAIPTAGQGTLCRRSLKYTGGTGPTSLNLSQAV 302 Query: 270 AVALYIT 276 V Y Sbjct: 303 GVLAYEM 309 >gi|157828032|ref|YP_001494274.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932730|ref|YP_001649519.1| SpoU family rRNA methylase [Rickettsia rickettsii str. Iowa] gi|157800513|gb|ABV75766.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907817|gb|ABY72113.1| rRNA methylase, SpoU family [Rickettsia rickettsii str. Iowa] Length = 230 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++K+ ++ G E GL + A + ++ +LN++ A + Y + Sbjct: 102 SEKVGIMFGRENNGLSNEEIAFANKIITINTT-EFSSLNIAQAVIIICYELLRN 154 >gi|303257835|ref|ZP_07343845.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Burkholderiales bacterium 1_1_47] gi|330998743|ref|ZP_08322471.1| RNA methyltransferase, TrmH family, group 1 [Parasutterella excrementihominis YIT 11859] gi|302859438|gb|EFL82519.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Burkholderiales bacterium 1_1_47] gi|329576240|gb|EGG57756.1| RNA methyltransferase, TrmH family, group 1 [Parasutterella excrementihominis YIT 11859] Length = 265 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%) Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 + K +E ++IA + G E GL + + +LN++ A V Sbjct: 105 CEMVKTCLEENPQEEIAFVFGTERSGLTNEEMMLCQLCTAIPANPECDSLNLAQAVQVTA 164 Query: 274 YITQN 278 Y Q Sbjct: 165 YQAQQ 169 >gi|157825295|ref|YP_001493015.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford] gi|157799253|gb|ABV74507.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford] Length = 231 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 ++K+ ++ G E GL K A + ++ +LN++ A + Y +F Sbjct: 102 SEKVGIMFGRENNGLSNKEVALANKIITINTT-EFSSLNIAQAVIIICYELFRNFK 156 >gi|68491281|ref|XP_710551.1| potential tRNA (Gm18) ribose methyltransferase [Candida albicans SC5314] gi|68491304|ref|XP_710540.1| potential tRNA (Gm18) ribose methyltransferase [Candida albicans SC5314] gi|46431756|gb|EAK91286.1| potential tRNA (Gm18) ribose methyltransferase [Candida albicans SC5314] gi|46431768|gb|EAK91297.1| potential tRNA (Gm18) ribose methyltransferase [Candida albicans SC5314] Length = 1440 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 57/218 (26%), Gaps = 15/218 (6%) Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-- 133 + + + P P+K V + G + D + Sbjct: 1222 DYDKKRKLNLKKPIVTPIKPVDSNEVSS-SSFLQTKSGAWNTIMDADAVVDDVNNTNNSV 1280 Query: 134 ---------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++V V+ P N+G I R + + + + Sbjct: 1281 RGSEIPRSELIVVSSLVDKPPNLGGICRLCDVLGAGLLTLHDIEVKNHINFKTVAVTADQ 1340 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP---LEQEIKNDKIALILGAEGKGLR 241 T+ + K K +++G E +G+ Sbjct: 1341 WMPMIEVKMENIKQYLLDKKREGYTLIGLEQTDKSIELNNDLKFPKKSLILIGKEREGIP 1400 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + GI++++N+ A A+ ++ + Sbjct: 1401 GDLLAELDFCVEIKQVGIVRSMNIQTATAIIVHAYSSQ 1438 >gi|294899352|ref|XP_002776605.1| rRNA methylase, putative [Perkinsus marinus ATCC 50983] gi|239883647|gb|EER08421.1| rRNA methylase, putative [Perkinsus marinus ATCC 50983] Length = 211 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 1/70 (1%) Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNVSN 267 S +P++ +LG EG G+ K ++ +LNV+ Sbjct: 78 CGVEIHPSSEPIQDMHWRGDTCFMLGNEGTGMTDKQIAACDQFTYIQQYTKATASLNVAI 137 Query: 268 AAAVALYITQ 277 A ++ + Sbjct: 138 AGSIVSHHFA 147 >gi|298292134|ref|YP_003694073.1| RNA methyltransferase, TrmH family, group 1 [Starkeya novella DSM 506] gi|296928645|gb|ADH89454.1| RNA methyltransferase, TrmH family, group 1 [Starkeya novella DSM 506] Length = 282 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + L+ G E GL + A + L + +LN+ A AV Y Sbjct: 121 ENVGLVFGRERTGLYTEEVSLADVILTLPVNPAFASLNLGMAVAVVAYE 169 >gi|303286179|ref|XP_003062379.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455896|gb|EEH53198.1| predicted protein [Micromonas pusilla CCMP1545] Length = 464 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 19/71 (26%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMP-----------------GIIK--ALNVSN 267 K+A++ G E GL + A + G +LN+S+ Sbjct: 220 GKVAIVFGNEATGLTNEELSLANVGVMIPTAGRAGAGAGGRRGEKRYTGGAGPTSLNLSH 279 Query: 268 AAAVALYITQN 278 A V Y Sbjct: 280 AVGVVAYELFR 290 >gi|145350500|ref|XP_001419642.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579874|gb|ABO97935.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 344 Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 23/87 (26%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK-------------- 261 +K ++ + K A++ G E GL + E A + + Sbjct: 107 CEKMRDEIARGGKCAILFGNERTGLTNEELELAEFGVSIPTSATVGTSAMARRNKYSGGA 166 Query: 262 ---------ALNVSNAAAVALYITQNH 279 +LN+ A V Y + Sbjct: 167 GVDGSQTATSLNLGMAVGVVAYELFSQ 193 >gi|254426790|ref|ZP_05040497.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881] gi|196192959|gb|EDX87918.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881] Length = 260 Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 N +IA++ G E +GL + LNV++A + Y + Sbjct: 110 NTRIAVLFGREDRGLTNDELRRCNLHVSVPTNPEYGVLNVASAVQLISYELR 161 >gi|85708541|ref|ZP_01039607.1| rRNA methylase [Erythrobacter sp. NAP1] gi|85690075|gb|EAQ30078.1| rRNA methylase [Erythrobacter sp. NAP1] Length = 249 Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 21/53 (39%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + A++ G E GL + A + + + +LN++ A + Y Sbjct: 105 PGRHAILFGREASGLETEDVALARHILTVPINPEFGSLNLAQAVILCAYEWSR 157 >gi|238881479|gb|EEQ45117.1| conserved hypothetical protein [Candida albicans WO-1] Length = 1443 Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 57/218 (26%), Gaps = 15/218 (6%) Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-- 133 + + + P P+K V + G + D + Sbjct: 1225 DYDKKRKLNLKKPIVTPIKPVDSNEVSS-SSFLQTKSGAWNTIMDADAVVDDVNNTNNSV 1283 Query: 134 ---------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++V V+ P N+G I R + + + + Sbjct: 1284 RGSEIPRSELIVVSSLVDKPPNLGGICRLCDVLGAGLLTLHDIEVKNHINFKTVAVTADQ 1343 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP---LEQEIKNDKIALILGAEGKGLR 241 T+ + K K +++G E +G+ Sbjct: 1344 WMPMIEVKMENIKQYLLDKKREGYTLIGLEQTDKSIELNNDLKFPKKSLILIGKEREGIP 1403 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + GI++++N+ A A+ ++ + Sbjct: 1404 GDLLAELDFCVEIKQVGIVRSMNIQTATAIIVHAYSSQ 1441 >gi|294659853|ref|XP_462280.2| DEHA2G17050p [Debaryomyces hansenii CBS767] gi|199434283|emb|CAG90782.2| DEHA2G17050p [Debaryomyces hansenii] Length = 1441 Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 24/55 (43%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K ++LG E +G+ + G+I+++N+ A A+ ++ + Sbjct: 1385 FPQKSLILLGREKEGVPGDLLAELDFCVEIKQVGVIRSMNIQTATAIIVHAYSSQ 1439 >gi|229818127|ref|ZP_04448409.1| hypothetical protein BIFANG_03419 [Bifidobacterium angulatum DSM 20098] gi|229784731|gb|EEP20845.1| hypothetical protein BIFANG_03419 [Bifidobacterium angulatum DSM 20098] Length = 213 Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 4/99 (4%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242 H + + + I ++ + K L+ G E + Sbjct: 108 YHDMAHVVLHPNFEDLVESMPDSRIIAFTAHATKLYTDIEYKPTDILLFGPEPGNIPDPM 167 Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M +++LN++N A++A+Y Sbjct: 168 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 206 >gi|41615173|ref|NP_963671.1| hypothetical protein NEQ384 [Nanoarchaeum equitans Kin4-M] gi|40068897|gb|AAR39232.1| NEQ384 [Nanoarchaeum equitans Kin4-M] Length = 232 Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K+ + +G E GL + + + LN ++A A+ LY H Sbjct: 108 KLGIFIGRESIGLTNEELSKMDFIVTIPANKEYPILNATHATAIILYELFKH 159 >gi|55376959|ref|YP_134809.1| RNA methyltransferase [Haloarcula marismortui ATCC 43049] gi|55229684|gb|AAV45103.1| RNA methyltransferase [Haloarcula marismortui ATCC 43049] Length = 241 Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 18/51 (35%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 I ++ G E GL + + LN+ AA + LY + Sbjct: 107 GDICVVFGRERVGLSNDELARLDVICSIPASASYPVLNLGQAATIVLYELR 157 >gi|296130802|ref|YP_003638052.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] gi|296022617|gb|ADG75853.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] Length = 219 Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 49/167 (29%) Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157 + + + V T + LD R+ + + + V+D + + + Sbjct: 33 DRELLAHGDRRNVVDAYRYWTVEAIVADLDTRRHPFHVAIENWVHDLNIGSVVRTANAFN 92 Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217 S + +R A++ H ++ + Sbjct: 93 SAGVHVVGRRRWNRRGAMVTDRYLHVHHHPDAAALATWAAGAGPDAGRLPVVGVDNVPGS 152 Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 P+E L+LG E GL Q + H+ G ++LN Sbjct: 153 VPVETFAFPRACVLLLGQESTGLTEAAQAMCDVVVHITQHGSTRSLN 199 >gi|145628790|ref|ZP_01784590.1| rRNA methylase [Haemophilus influenzae 22.1-21] gi|144979260|gb|EDJ88946.1| rRNA methylase [Haemophilus influenzae 22.1-21] Length = 268 Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 90/241 (37%), Gaps = 13/241 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97 ++ ++ +YG + A + I +L AT ++ + V Sbjct: 28 KKNRAEEMK--VYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 85 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + + ++ G E H G+ L + T LD RN L++LD+VN+ NIG +LR+ Sbjct: 86 SEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRT 144 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 F I+ + A + + GA + + S Sbjct: 145 CAYFGVKNIVADNVENLYSGASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHVSH 204 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVA 272 + PL++ +K+ +L +E T E + L + IK+ LN++ A V Sbjct: 205 NKQGDPLDKVRLKNKVVFVL-SESSTESLATSE--DTQVRLTLASPIKSGLNIAVNAGVL 261 Query: 273 L 273 L Sbjct: 262 L 262 >gi|87124813|ref|ZP_01080661.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9917] gi|86167692|gb|EAQ68951.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9917] Length = 254 Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L+ G E +GL + + L+ +LN+S+A AV L+ + Sbjct: 124 LVFGREDRGLSNDELLLSQRVIALYSDPHYPSLNLSHAVAVVLHELERCR 173 >gi|304311799|ref|YP_003811397.1| RNA methyltransferase [gamma proteobacterium HdN1] gi|301797532|emb|CBL45752.1| RNA methyltransferase [gamma proteobacterium HdN1] Length = 254 Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 19/54 (35%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++A++ G E GL + + LNVS A V Y + Sbjct: 110 GRVAVLFGREDNGLTNEELSLCHYHVTIPCSDEYCVLNVSQAIQVICYQLRQSL 163 >gi|157964184|ref|YP_001499008.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5] gi|157843960|gb|ABV84461.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5] Length = 233 Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++K+ ++ G E GL + A + ++ +LN++ A + Y + Sbjct: 105 SEKVGIMFGRENNGLSNEEIAFANKIITINTT-KFSSLNIAQAVIIICYELFRN 157 >gi|218551706|ref|YP_002385498.1| RNA methyltransferase [Escherichia fergusonii ATCC 35469] gi|218359248|emb|CAQ91914.1| rRNA methyltransferase [Escherichia fergusonii ATCC 35469] Length = 228 Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 22/54 (40%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + +AL+ G E GL + A + + M +LN+ A V Y N Sbjct: 104 WMNHVALVFGREDSGLTNEELALADILTGVPMVADYPSLNLGQAVMVYCYQLAN 157 >gi|241954588|ref|XP_002420015.1| tRNA guanosine-2'-O-methyltransferase, putative; trna guanosine-2'-o-methyltransferase trm3 (ec 2.1.1.34) (trna [gm18 methyltransferase) (trna methylase 3) [Candida dubliniensis CD36] gi|223643356|emb|CAX42231.1| tRNA guanosine-2'-O-methyltransferase, putative [Candida dubliniensis CD36] Length = 1411 Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 24/55 (43%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K +++G E +G+ + GI++++N+ A A+ ++ + Sbjct: 1355 FPKKSLILIGKEREGIPGDLLAELDFCVEIKQVGIVRSMNIQTATAIIVHAYSSQ 1409 >gi|149926793|ref|ZP_01915052.1| probable methyltransferase [Limnobacter sp. MED105] gi|149824345|gb|EDM83563.1| probable methyltransferase [Limnobacter sp. MED105] Length = 269 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 18/48 (37%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A + GAE GL + + +LN+S A + Y + Sbjct: 119 AFVFGAERTGLSNDELLVCNRQVTIAANPVYSSLNLSQAVQIVAYALR 166 >gi|307106546|gb|EFN54791.1| hypothetical protein CHLNCDRAFT_52745 [Chlorella variabilis] Length = 302 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 K+AL+ G E GL + + + + + +++++S+A +V L A Sbjct: 223 RKLALVFGREVSGLTAAEVDMCDATLSIPIGRLQESMSLSHAVSVVLSRLFEQRA 277 >gi|34580886|ref|ZP_00142366.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246] gi|28262271|gb|EAA25775.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246] Length = 168 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 14/155 (9%), Positives = 44/155 (28%), Gaps = 5/155 (3%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + +L+ + +++ + + ++ A A ++H Sbjct: 1 MNPIIILVTPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAK 60 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK----IALILGAEGKGLRPKT 244 + + + + + + ++ G E GL + Sbjct: 61 IFDSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPLDYPNSEKVGIMFGRENNGLSNEE 120 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 AT + ++ +LN++ A + Y + Sbjct: 121 IAFATKIITINTT-EFSSLNIAQAVIIICYELLRN 154 >gi|148264087|ref|YP_001230793.1| RNA methyltransferase [Geobacter uraniireducens Rf4] gi|146397587|gb|ABQ26220.1| RNA methyltransferase, TrmH family, group 1 [Geobacter uraniireducens Rf4] Length = 245 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 19/53 (35%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++AL+ G E GL + + +LN++ A + Y Sbjct: 108 MHRVALVFGREDSGLTTDEVAVCRWQSTIPTADDYGSLNLAQAVLIFCYELFK 160 >gi|294155367|ref|YP_003559751.1| rRNA methylase [Mycoplasma crocodyli MP145] gi|291600056|gb|ADE19552.1| rRNA methylase [Mycoplasma crocodyli MP145] Length = 174 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 47/154 (30%), Gaps = 6/154 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + ++L N G I+R+ A I L + +G + I Sbjct: 1 MINIILYQPEICPNTGNIIRTCFALGAKLHIIKPTSFDLHPKYLRRYGAGRILSDIQHEI 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-----DKIALILGAEGKGLRPKTQ-E 246 D + + K EQ K ++ L+ G E G+ + Sbjct: 61 HASYDDFENKYKNKNIFYITRYGLKTYTEQNFKKAYDQSGEVWLMFGRESTGIDKNILHK 120 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + + M ++++N++N + + Sbjct: 121 NINNCLRIPMVSEMRSINLANCVCIVGFEVMRQL 154 >gi|150864630|ref|XP_001383531.2| hypothetical protein PICST_82718 [Scheffersomyces stipitis CBS 6054] gi|149385886|gb|ABN65502.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 1408 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 23/56 (41%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K ++LG E +G+ + G+I+++N+ A A+ ++ Sbjct: 1351 QFPKKSLILLGREKEGVPGDLLAELDFCVEIKQVGVIRSMNIQTATAIIVHAYSTQ 1406 >gi|114799978|ref|YP_759896.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444] gi|114740152|gb|ABI78277.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC 15444] Length = 248 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 19/45 (42%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 A++ G E GL + ++ + +LN++ A V + Sbjct: 109 AVLFGGEKSGLPNEAVALCDAILTYPVNPDFSSLNLAQAVGVFCH 153 >gi|254419003|ref|ZP_05032727.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3] gi|196185180|gb|EDX80156.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3] Length = 269 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K L+ G E GL + + + +LN++ A A+ Y + Sbjct: 120 KTGLLFGGERAGLETTDIALCAGIVTIPIDPKHHSLNLAQAVAINAYEWR 169 >gi|257076123|ref|ZP_05570484.1| rRNA methylase [Ferroplasma acidarmanus fer1] Length = 236 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 20/52 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K+AL+ G E GL + + N+S+A A+ LY Sbjct: 109 QKVALVFGREDNGLNYEELGMCNFFLKIIGNPEYPVYNLSHAVAIILYEMIK 160 >gi|328479696|gb|EGF48853.1| RNA methyltransferase, TrmH family [Lactobacillus rhamnosus MTCC 5462] Length = 37 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 7/33 (21%), Positives = 18/33 (54%) Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + ++ + G ++LNV+ AAA+ ++ Sbjct: 2 LLKQTDTNLYIPIRGQAESLNVAVAAAIMMFHL 34 >gi|294634936|ref|ZP_06713454.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda ATCC 23685] gi|291091645|gb|EFE24206.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda ATCC 23685] Length = 238 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 20/71 (28%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 E++ AL+ G E GL + + M +LN+ Sbjct: 85 FHYYCTPPELVGILQEKQQWMASCALVFGREDSGLTNDELALVDLLTGVPMAADYPSLNL 144 Query: 266 SNAAAVALYIT 276 A V Y Sbjct: 145 GQAVMVFCYQL 155 >gi|255721203|ref|XP_002545536.1| hypothetical protein CTRG_00317 [Candida tropicalis MYA-3404] gi|240136025|gb|EER35578.1| hypothetical protein CTRG_00317 [Candida tropicalis MYA-3404] Length = 1434 Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 53/190 (27%), Gaps = 5/190 (2%) Query: 95 TVPPQTIDKIVGKEAVHQGLALETAPLLSPT--LDAVRNSQLLMVLDHVNDPHNIGAILR 152 V P G + + + + V S+L++V V+ P N+G I R Sbjct: 1243 IVTPIEPVVQSSPLQTKSGAWNTIMEVDNDSSRIAEVERSELIVVSSLVDKPPNLGGICR 1302 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 + + + T+ Sbjct: 1303 LCDVLGAGLLTLHDIEVKKHPHFKTVAVTADHWMPMIEVKMENIRDYLLDKKREGYTLIG 1362 Query: 213 SSDSKKP---LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + K K +++G E +G+ + GI++++N+ A Sbjct: 1363 LEQTDKSVELNNDLKFPKKSLILIGKEREGIPGDLLAELDFCVEIKQVGIVRSMNIQTAT 1422 Query: 270 AVALYITQNH 279 A+ ++ + Sbjct: 1423 AIIVHAYSSQ 1432 >gi|330814239|ref|YP_004358478.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. IMCC9063] gi|327487334|gb|AEA81739.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. IMCC9063] Length = 126 Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 21/43 (48%) Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + G E GL + +A + + ++LN+S+A +V Y Sbjct: 1 MFGPENAGLSNEDLISANYLLKIPSDAKYESLNLSHAVSVVAY 43 >gi|315633532|ref|ZP_07888822.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393] gi|315477574|gb|EFU68316.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393] Length = 358 Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 85/259 (32%), Gaps = 16/259 (6%) Query: 26 NHRDYKKMQSFNQK-----SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80 + KK + + ++ ++ +YG + A I +L AT + Sbjct: 99 DKPREKKTGPLSPRAPEKIKKNRAEEMK--VYGENACLALFQQRPGSIVRLWATVQMAHK 156 Query: 81 LDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLL 135 + + L V + V H G+ + T LD L Sbjct: 157 IGDICSYLATNKKVYHIVDNDEMIKVSGTEHHGGICMLVKKAHPFTLQGYLDVPHQEDCL 216 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD+VN+ NIG ILR+ F I+ S + + L + GA Sbjct: 217 VLLDNVNNAQNIGGILRTCAFFGVKNIVVENAESLNSAVTLRVAEGGAEYVRVLETNDTR 276 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 Q + S ++ L++ +K +L +E E + L Sbjct: 277 NALSQLRQAGYQILHVSSDENATALDKVQLKNKTVFVL-SEST--TKALSEKSDEQVRLA 333 Query: 256 MPGIIKA-LNVSNAAAVAL 273 +K LNVS A + L Sbjct: 334 FASPVKNGLNVSVNAGILL 352 >gi|307197937|gb|EFN79022.1| RNA methyltransferase-like protein 1 [Harpegnathos saltator] Length = 436 Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 29/73 (39%), Gaps = 4/73 (5%) Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLR----PKTQETATSMAHLHMPGIIKALNVSNA 268 + ++ LI+G E +G+ ++ ++ + I++LN ++A Sbjct: 357 QFPIVPYHTLDFAKKEVVLIIGGETEGISLQSCDLLRDRNCIRVNISLTNGIESLNTASA 416 Query: 269 AAVALYITQNHFA 281 +V + + F Sbjct: 417 LSVITFEIRRQFI 429 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 58/176 (32%), Gaps = 4/176 (2%) Query: 20 YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79 Y L N + + + + + + L G + A+ Sbjct: 100 YKPLDENDKFISSLMINIRTKKRREKNGQILLEGSRLIQDAIQAGVMPQIIFF----NRL 155 Query: 80 RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139 +LP + +P +TI + P + A L ++ D Sbjct: 156 ADVLQLSLPKEVQLYKIPYRTIQLWSTLTTSPGIFGIFDIPDVENNTPANDAIPLTIICD 215 Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++ +P N+G+I+R+A A C+ ++ K + + A GA + R + Sbjct: 216 NIREPGNLGSIIRTAAAVGCEKLLLMKGCVDIWEPKVLRGAVGAHFRVSIHRSLSW 271 >gi|62258308|gb|AAX77781.1| unknown protein [synthetic construct] Length = 282 Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++KIA++ G E GL + + A++ +LN++ A + Y Sbjct: 137 DEKIAILFGRERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQ 190 >gi|317154690|ref|YP_004122738.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio aespoeensis Aspo-2] gi|316944941|gb|ADU63992.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio aespoeensis Aspo-2] Length = 248 Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 21/49 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++A++ G E GL + + + +LN++ A V LY Sbjct: 109 GRVAILFGPEDTGLTNDETSVCSGLMTIPTSREGTSLNLAQAVVVVLYE 157 >gi|224005541|ref|XP_002291731.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220972250|gb|EED90582.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 416 Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 5/83 (6%) Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL- 254 + + + + PL+ + ILG+E G+ + L Sbjct: 319 WTSFAEWAAPRSAVWVVIEMGGTPLKDFVHPRNAIYILGSEDHGVPKSVVRACREVVSLE 378 Query: 255 -HMPGIIKALNVSNAAAVALYIT 276 M G + NV+ A ++ +Y Sbjct: 379 CEMYG---SYNVAVAGSIVMYDR 398 >gi|124485957|ref|YP_001030573.1| hypothetical protein Mlab_1137 [Methanocorpusculum labreanum Z] gi|124363498|gb|ABN07306.1| RNA methyltransferase, TrmH family, group 1 [Methanocorpusculum labreanum Z] Length = 248 Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 1/78 (1%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + S ++ E + +I+++ G E GL + + + +N+ Sbjct: 86 NPMRMPYYSVAELREMIEGIDGRISILFGRENWGLNNEEIAKCDIVCTIPTSDEYPIMNI 145 Query: 266 SNAAAVALYITQN-HFAK 282 S+A + Y + + Sbjct: 146 SHAIGIVCYELAHLQRGE 163 >gi|254502928|ref|ZP_05115079.1| RNA methyltransferase, TrmH family, group 1 [Labrenzia alexandrii DFL-11] gi|222438999|gb|EEE45678.1| RNA methyltransferase, TrmH family, group 1 [Labrenzia alexandrii DFL-11] Length = 270 Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 20/53 (37%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + G E GL + A + L + +LN++ A V Y + Sbjct: 122 QHGVGYLFGRERWGLNNEEVALADEIVTLPVDPDFASLNIAQAVLVCAYEWRK 174 >gi|134301622|ref|YP_001121590.1| RNA methyltransferase [Francisella tularensis subsp. tularensis WY96-3418] gi|187931770|ref|YP_001891755.1| rRNA methylase, SpoU family [Francisella tularensis subsp. mediasiatica FSC147] gi|134049399|gb|ABO46470.1| RNA methyltransferase, TrmH/SpoU family, group 1 [Francisella tularensis subsp. tularensis WY96-3418] gi|187712679|gb|ACD30976.1| rRNA methylase, SpoU family [Francisella tularensis subsp. mediasiatica FSC147] Length = 247 Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++KIA++ G E GL + + A++ +LN++ A + Y Sbjct: 111 DEKIAILFGRERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQ 164 >gi|163787679|ref|ZP_02182126.1| hypothetical protein FBALC1_04032 [Flavobacteriales bacterium ALC-1] gi|159877567|gb|EDP71624.1| hypothetical protein FBALC1_04032 [Flavobacteriales bacterium ALC-1] Length = 152 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 9/156 (5%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D + N + + + P N+G + RSA I T ++ A++ Sbjct: 3 DNLTNEFFGIGIQNGKTPENLGVLWRSAQNLGASFIFTIGNRYAKQACDTH----NAVKS 58 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 +PY D + + + LE + +LGAE GL + Sbjct: 59 MPYFHYETFEDFFNNLPKGARLVGVELNKDAEDLETFHHPRRCVYLLGAEDHGLSKIAID 118 Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + + +LNVS A ++ +Y K Sbjct: 119 KSHFLVK---FKSQLSLNVSVAGSIVMYD--RGINK 149 >gi|154248490|ref|YP_001419448.1| RNA methyltransferase [Xanthobacter autotrophicus Py2] gi|154162575|gb|ABS69791.1| RNA methyltransferase, TrmH family, group 1 [Xanthobacter autotrophicus Py2] Length = 298 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + +AL+ G E GL + ++ L + +LN++ AV Y Sbjct: 121 EDVALVFGRERTGLYTEEVSLCDAILTLPVNPAFASLNLAMCVAVTGYE 169 >gi|330872261|gb|EGH06410.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] Length = 201 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 58/195 (29%), Positives = 91/195 (46%), Gaps = 8/195 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ + + R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 VHQG+ + +P LD S LL+VLD V DPHN+GA LR+A A + Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 I K S + + + K A GA E IP + ++NL L+K+ G +G + +++ L Q Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186 Query: 223 EIKNDKIALILGAEG 237 + +I+GAEG Sbjct: 187 QDLTGPTIIIMGAEG 201 >gi|254369607|ref|ZP_04985618.1| rRNA methylase [Francisella tularensis subsp. holarctica FSC022] gi|157122561|gb|EDO66696.1| rRNA methylase [Francisella tularensis subsp. holarctica FSC022] Length = 247 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++KIA++ G E GL + + A++ +LN++ A + Y Sbjct: 111 DEKIAILFGRERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQ 164 >gi|42527587|ref|NP_972685.1| RNA methyltransferase [Treponema denticola ATCC 35405] gi|41818415|gb|AAS12604.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405] Length = 251 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L+ G E GL + + ++ + N+S+A + Y Sbjct: 109 FYGGRLGLVFGNERTGLIDEELNICSFSVNIPAEEDFGSYNLSHAVLILCY 159 >gi|56708339|ref|YP_170235.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110670810|ref|YP_667367.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. tularensis FSC198] gi|224457463|ref|ZP_03665936.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254370961|ref|ZP_04986965.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875161|ref|ZP_05247871.1| spoU rRNA methylase family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|56604831|emb|CAG45912.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321143|emb|CAL09295.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. tularensis FSC198] gi|151569203|gb|EDN34857.1| hypothetical protein FTBG_01707 [Francisella tularensis subsp. tularensis FSC033] gi|254841160|gb|EET19596.1| spoU rRNA methylase family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159576|gb|ADA78967.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. tularensis NE061598] Length = 247 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++KIA++ G E GL + + A++ +LN++ A + Y Sbjct: 111 DEKIAILFGRERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQ 164 >gi|89256502|ref|YP_513864.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. holarctica LVS] gi|115314934|ref|YP_763657.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|156502613|ref|YP_001428678.1| RNA methyltransferase [Francisella tularensis subsp. holarctica FTNF002-00] gi|254367834|ref|ZP_04983854.1| spoU rRNA methylase family protein [Francisella tularensis subsp. holarctica 257] gi|290953971|ref|ZP_06558592.1| RNA methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|295312648|ref|ZP_06803398.1| RNA methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|89144333|emb|CAJ79620.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. holarctica LVS] gi|115129833|gb|ABI83020.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134253644|gb|EBA52738.1| spoU rRNA methylase family protein [Francisella tularensis subsp. holarctica 257] gi|156253216|gb|ABU61722.1| RNA methyltransferase, TrmH family, group 1protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 247 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++KIA++ G E GL + + A++ +LN++ A + Y Sbjct: 111 DEKIAILFGRERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQ 164 >gi|325474454|gb|EGC77641.1| TrmH family RNA methyltransferase [Treponema denticola F0402] Length = 251 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ L+ G E GL + + ++ + N+S+A + Y Sbjct: 109 FYGGRLGLVFGNERTGLIDEELNICSFSVNIPAEEDFGSYNLSHAVLILCY 159 >gi|255716658|ref|XP_002554610.1| KLTH0F09350p [Lachancea thermotolerans] gi|238935993|emb|CAR24173.1| KLTH0F09350p [Lachancea thermotolerans] Length = 1396 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 25/204 (12%), Positives = 54/204 (26%), Gaps = 8/204 (3%) Query: 76 NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135 + W P V Q + G + + + L Sbjct: 1191 GQDQKHLWLKKRTRPKQEAEVSLQKDSPL----QTKSGAWETVMDIDNQSSAVTVKRSPL 1246 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +V+ + D + G++T A A +P ++ Sbjct: 1247 IVIASLVDKAPNLGGICRLCDVLGAGLLTVHDIRIKNHPQFKSVAVTADRWMPMEAVTTQ 1306 Query: 196 TDALQKMHSWGFQTI----GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + S + + K ++LG E +G+ Sbjct: 1307 DITKFMRSKKQEGYTLIGLEQTDKSIQLDNKFQFPPKSLILLGTESEGIPGHLLSELDLC 1366 Query: 252 AHLHMPGIIKALNVSNAAAVALYI 275 + G+I+++N+ A AV ++ Sbjct: 1367 LEIKQSGVIRSMNIQTATAVIVHA 1390 >gi|187479053|ref|YP_787077.1| tRNA/rRNA methyltransferase [Bordetella avium 197N] gi|115423639|emb|CAJ50179.1| putative tRNA/rRNA methyltransferase [Bordetella avium 197N] Length = 267 Score = 56.0 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A++LG E GL + + H+ +LNV+ A +A + + Sbjct: 115 DGCVAIVLGTERSGLTNEQIGLCQRICHIPANPEYSSLNVAQALQLAAWELR 166 >gi|331701050|ref|YP_004398009.1| tRNA/rRNA methyltransferase SpoU [Lactobacillus buchneri NRRL B-30929] gi|329128393|gb|AEB72946.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus buchneri NRRL B-30929] Length = 170 Score = 56.0 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 48/154 (31%), Gaps = 4/154 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 +VL P N G I R+ + + L ++ + + Sbjct: 1 MTNHIVLFEPLMPANTGNIARTCAGTDTVLDLIEPLGFSIDDKHLKRAGLDYWDKVQINY 60 Query: 192 ISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248 NL + L+ + + ++ + + L+ G E GL ++ Sbjct: 61 HQNLPEFLKSVKNPQNLFLVSKFANQDYTDPDYSDPSQDYYLLFGKETTGLPEPFMRQNP 120 Query: 249 TSMAHLHMPG-IIKALNVSNAAAVALYITQNHFA 281 + I+ALN+SN A+ +Y Sbjct: 121 EKAIRIPQDDDNIRALNLSNTCAIVIYEVLRQQN 154 >gi|145341114|ref|XP_001415660.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144575883|gb|ABO93952.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 445 Score = 56.0 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 15/67 (22%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK---------------ALNVSNAA 269 K K+A++ G E GL A + + G K +LN+S+A Sbjct: 206 KRGKVAVLFGNERTGLTNDELSWAHAAVAIPTAGAGKICRKSLKYTGGTGPTSLNLSHAV 265 Query: 270 AVALYIT 276 + Y Sbjct: 266 GILAYEI 272 >gi|225715396|gb|ACO13544.1| RNA methyltransferase-like protein 1A [Esox lucius] Length = 329 Score = 56.0 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 60/177 (33%), Gaps = 6/177 (3%) Query: 2 NLISKKKSEKIFSLKD----SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTV 57 N SE KD + + + ++ S + + + G + Sbjct: 105 NYSPSTTSEHTTYPKDQLGGLKFERALPGDKRLARVVSVARSRTFREHQGKILIEGRRLI 164 Query: 58 SAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 AL + ++ + L+ L D VK + +V + V + Sbjct: 165 CDALAAGANPQMVFFSSLDRLSELPLDKLKRATLVKVKFEDIKIWSDVVAPQGVIAIFSR 224 Query: 117 ETAPLLSPTLDAVRNS-QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172 L+ D S L ++ D+V DP N+G ILR AVA C I+ TK Sbjct: 225 PDPSQLTFPPDQRSQSLPLSLICDNVRDPGNLGTILRCAVAAGCHNILLTKGCVDVW 281 >gi|328352676|emb|CCA39074.1| hypothetical protein PP7435_Chr3-0102 [Pichia pastoris CBS 7435] Length = 1457 Score = 56.0 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K ++LG E +G+ + G+I+++N+ A AV ++ Sbjct: 1401 FPKKSLIVLGMEKEGIPSSILAELDFCVEIKQVGVIRSMNIQTATAVIVHAYAIQ 1455 >gi|307260664|ref|ZP_07542356.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869741|gb|EFN01526.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 346 Score = 56.0 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 45/260 (17%), Positives = 88/260 (33%), Gaps = 17/260 (6%) Query: 27 HRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81 + K+ ++ R + E + +YG + A I +L AT +L Sbjct: 82 NNTMKEKKTGPLSPRAPEKIKKNRAEEMKVYGENACLALFKQRPDAIVRLWATIEGAKKL 141 Query: 82 DWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLL 135 H V ++++ G E H + L + +L+ R L Sbjct: 142 GDMLSYLAEHKKAYHVVDRAEMERVTGTEQHHGDVCLLVKKAVPFSLEGYLQVPRKRDCL 201 Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 ++LD VN+ N+G I+R+ + +I + + SA + G P Sbjct: 202 VLLDAVNNAQNVGGIIRTCAFYGVSRVIVESADTLNSSAAARVAEGGLEFVRPLETKHKQ 261 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHL 254 Q ++ + L + K +L +E + + E + L Sbjct: 262 IALTQLRNAGYQVVHLTRNKQAASLAKTKLAAKTVFVL-SE---IPAQGVEYPEDTTVQL 317 Query: 255 HMPGIIKA-LNVSNAAAVAL 273 + + LNV+ +A + L Sbjct: 318 SFENPLNSGLNVAVSAGIVL 337 >gi|330836124|ref|YP_004410765.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM 17374] gi|329748027|gb|AEC01383.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM 17374] Length = 265 Score = 56.0 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 5/149 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 ++LD + P+NIGA+ R+A +F II + + ++A G Sbjct: 115 EIRPFTVILDRIRSPYNIGALFRTADSFGVKEIILIEGCASPLHTRAKRTARG--CTETV 172 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 +++ + + + + +++G E G+ P Sbjct: 173 DWSMMDEESVIDLIHRRKVPVFALETGGVNIAGFPFPPEGIMVVGNEEFGVSPALLRACQ 232 Query: 250 S---MAHLHMPGIIKALNVSNAAAVALYI 275 L G +LNVS A + ++ Sbjct: 233 ESAGRLSLLQAGTKASLNVSVAFGIVMHA 261 >gi|297623111|ref|YP_003704545.1| RNA methyltransferase [Truepera radiovictrix DSM 17093] gi|297164291|gb|ADI14002.1| RNA methyltransferase, TrmH family, group 1 [Truepera radiovictrix DSM 17093] Length = 248 Score = 56.0 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 1/50 (2%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + +A++ G E GL + + +LN++ A + Y Sbjct: 110 PEGLAVLFGPEDFGLSNDDLKHCQGYIRIPTAAYA-SLNLAQAVQLVAYE 158 >gi|91205992|ref|YP_538347.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C] gi|157826644|ref|YP_001495708.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389] gi|91069536|gb|ABE05258.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C] gi|157801948|gb|ABV78671.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389] Length = 231 Score = 56.0 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K+ ++ G E GL + A + ++ +LN++ A + Y + Sbjct: 104 KVGIMFGRENNGLSNEEISLANKIITINTT-EFSSLNIAQAVIIVCYELFRN 154 >gi|81300411|ref|YP_400619.1| RNA methyltransferase TrmH, group 1 [Synechococcus elongatus PCC 7942] gi|81169292|gb|ABB57632.1| RNA methyltransferase TrmH, group 1 [Synechococcus elongatus PCC 7942] Length = 245 Score = 56.0 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 17/50 (34%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ALI G E GL+ A +LN++ A + Y Sbjct: 101 QGPAALIFGREDSGLQRSELSLAQRYLTFPTDPAYPSLNLAQAVGLCCYH 150 >gi|56750068|ref|YP_170769.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] gi|56685027|dbj|BAD78249.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] Length = 267 Score = 56.0 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 17/50 (34%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ALI G E GL+ A +LN++ A + Y Sbjct: 123 QGPAALIFGREDSGLQRSELSLAQRYLTFPTDPAYPSLNLAQAVGLCCYH 172 >gi|325285781|ref|YP_004261571.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489] gi|324321235|gb|ADY28700.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489] Length = 151 Score = 56.0 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 2/96 (2%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + LS+ ++K + D + + G E GL Sbjct: 52 YWQHLDLKIYDSITHFFEVHSDKKFAFLSAKAEKNYYEIDYEDNMFFVFGKESVGLPASV 111 Query: 245 QE-TATSMAHLHMPGI-IKALNVSNAAAVALYITQN 278 E S+ + + I++LN++NA ++ +Y Sbjct: 112 VEKHKNSLYKIPLFSEHIRSLNLANAVSIVIYDAIK 147 >gi|42524890|ref|NP_970270.1| RNA methyltransferase [Bdellovibrio bacteriovorus HD100] gi|39577100|emb|CAE78329.1| RNA methyltransferase, TrmH family, group 1 [Bdellovibrio bacteriovorus HD100] Length = 261 Score = 56.0 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN----HFAK 282 L+ G E GL + E A A + G +LN++ A + +Y + K Sbjct: 122 LVFGPEDWGLAGEDLEHANFCACIPTFGDNWSLNLAQATLLGMYSLRRTWGGQRTK 177 >gi|260582311|ref|ZP_05850104.1| rRNA methylase [Haemophilus influenzae NT127] gi|260094679|gb|EEW78574.1| rRNA methylase [Haemophilus influenzae NT127] Length = 351 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 86/240 (35%), Gaps = 11/240 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97 ++ ++ +YG + A I +L AT ++ H V Sbjct: 111 KKNRAEEMK--VYGENACLALFAERPESIVRLWATVQMSHKIGEVLSYLAEHKKAYHVVD 168 Query: 98 PQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 + + ++ G + + L LD RN L++LD+VN+ NIG +LR+ Sbjct: 169 SEELARVSGTEHHGGICLLVKKPRVFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRTC 228 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F I+ + +A + + G+ + + S + Sbjct: 229 AYFGVKNIVADNVENLYSAASMRVAEGGSEYIRVLETDDIDSALMHLRKSGYQVMHVSHN 288 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273 PL++ +K+ +L +E T E + L + IK+ LN++ A V L Sbjct: 289 KQGDPLDKVRLKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVLL 345 >gi|190348050|gb|EDK40436.2| hypothetical protein PGUG_04534 [Meyerozyma guilliermondii ATCC 6260] Length = 1409 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K ++LG E +G+ + G+I+++N+ A AV ++ Sbjct: 1353 FPKKTLMLLGREKEGIPGDLLAELDFCVEIKQVGVIRSMNIQTATAVIVHAYSTQ 1407 >gi|146415670|ref|XP_001483805.1| hypothetical protein PGUG_04534 [Meyerozyma guilliermondii ATCC 6260] Length = 1409 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K ++LG E +G+ + G+I+++N+ A AV ++ Sbjct: 1353 FPKKTLMLLGREKEGIPGDLLAELDFCVEIKQVGVIRSMNIQTATAVIVHAYSTQ 1407 >gi|324112605|gb|EGC06582.1| RNA methyltransferase [Escherichia fergusonii B253] gi|325495934|gb|EGC93793.1| RNA methyltransferase [Escherichia fergusonii ECD227] Length = 228 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + AL+ G E GL + A + + M +LN+ A V Y N Sbjct: 104 WMNHAALVFGREDSGLTNEELALADILTGVPMVADYPSLNLGQAVMVYCYQLAN 157 >gi|103486280|ref|YP_615841.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256] gi|98976357|gb|ABF52508.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256] Length = 248 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 21/54 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + A + G E GL A ++ + + +LN++ A + Y H Sbjct: 108 PGRSAYVFGPERSGLETDDVALAHAIVTVPINPAFGSLNLAQAVILLAYEWSKH 161 >gi|145638666|ref|ZP_01794275.1| rRNA methylase [Haemophilus influenzae PittII] gi|145272261|gb|EDK12169.1| rRNA methylase [Haemophilus influenzae PittII] gi|309750160|gb|ADO80144.1| Putative rRNA methylase [Haemophilus influenzae R2866] Length = 351 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 90/241 (37%), Gaps = 13/241 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97 ++ ++ +YG + A + I +L AT ++ + V Sbjct: 111 KKNRAEEMK--VYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 168 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + + ++ G E H G+ L + T LD RN L++LD+VN+ NIG +LR+ Sbjct: 169 SEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRT 227 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 F I+ + A + + GA + + S Sbjct: 228 CAYFGVKNIVADNVENLYSGASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHVSH 287 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVA 272 + PL++ +K+ +L +E T E + L + IK+ LN++ A V Sbjct: 288 NKQGDPLDKVRLKNKVVFVL-SESSTESLATSE--DTQVRLTLASPIKSGLNIAVNAGVL 344 Query: 273 L 273 L Sbjct: 345 L 345 >gi|260772015|ref|ZP_05880932.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio metschnikovii CIP 69.14] gi|260612882|gb|EEX38084.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio metschnikovii CIP 69.14] Length = 39 Score = 55.6 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 7/32 (21%), Positives = 13/32 (40%) Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + M ++LN+SNA A+ + Sbjct: 2 NQRIRIPMMPNARSLNLSNAVAIIAFEAWRQL 33 >gi|15603722|ref|NP_246796.1| hypothetical protein PM1857 [Pasteurella multocida subsp. multocida str. Pm70] gi|12722284|gb|AAK03941.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 359 Score = 55.6 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 93/278 (33%), Gaps = 15/278 (5%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65 + K+ + S A + + + + ++ E + +YG + A Sbjct: 81 SGEEGKVKVVVKSTGASDKPREKKTGALSPRAPEKIKKNRAEEMKVYGENACQALFAQRP 140 Query: 66 RKIFQLLATKNALAR--LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 I ++ AT + + V + +V A H G+ + Sbjct: 141 ESIVRIWATVEMAKKSGELFSYLAEQKKAYHVVDSAELA-LVSGTAHHGGICMLVKKARP 199 Query: 124 PT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 T LD R L+++D V +PHN+G ++R+ F G++ + + + +A A Sbjct: 200 FTLAGYLDIPRKQDCLVLIDGVQNPHNLGGVVRTCAVFGVKGVVIEQALADNLNAPAAMR 259 Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEG 237 + + + + + +K+ + +K+ +L E Sbjct: 260 VAEGGMEYVRVLETTDVPKALAQLRQAGYQLIHVTANKQAKPLSKLHFTEKVVFVL-NE- 317 Query: 238 KGLRPKTQETATSMAHLHMPG--IIKALNVSNAAAVAL 273 +G + L + + LN++ A + L Sbjct: 318 QG-DASLAQAEDEQVVLSLGNPLKAE-LNIAVATGILL 353 >gi|117924869|ref|YP_865486.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1] gi|117608625|gb|ABK44080.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1] Length = 258 Score = 55.6 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ ++ G E GL E + + G +LN+S A + Y Sbjct: 118 RVGILFGTERTGLETADVERCHWICTIPTHGEKGSLNLSQAVMLVAYELM 167 >gi|262376214|ref|ZP_06069444.1| rRNA methylase [Acinetobacter lwoffii SH145] gi|262308815|gb|EEY89948.1| rRNA methylase [Acinetobacter lwoffii SH145] Length = 282 Score = 55.6 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E +GL + A + + LNV+ A V Y + Sbjct: 122 VAILFGREDRGLTNEELAMANYHLTIPVNTDYGVLNVAQAIQVICYEMR 170 >gi|145640385|ref|ZP_01795969.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae R3021] gi|145274971|gb|EDK14833.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 22.4-21] Length = 351 Score = 55.6 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 86/240 (35%), Gaps = 11/240 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97 ++ ++ +YG + A + I +L AT ++ + V Sbjct: 111 KKNRAEEMK--VYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 168 Query: 98 PQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 + + ++ G E A L LD RN L++LD+VN+ NIG +LR+ Sbjct: 169 SEELARVSGTEHHAGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRTC 228 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F I+ + A + + GA + + S + Sbjct: 229 AYFGVKNIVADNVENLYSGASMRVAEGGAEYIRVLETDYIDSALMHLRKSGYQVIHVSHN 288 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273 PL++ +K+ +L +E T E + L + IK+ LN++ A V L Sbjct: 289 KQGDPLDKVRLKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVLL 345 >gi|227509370|ref|ZP_03939419.1| SpoU family RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227512233|ref|ZP_03942282.1| SpoU family RNA methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227524036|ref|ZP_03954085.1| SpoU family RNA methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227084627|gb|EEI19939.1| SpoU family RNA methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227088775|gb|EEI24087.1| SpoU family RNA methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227191082|gb|EEI71149.1| SpoU family RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 175 Score = 55.6 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 52/157 (33%), Gaps = 4/157 (2%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 +VL P N G I R+ + ++ L ++ Sbjct: 1 MMEEKMANHIVLFEPLMPANTGNIARTCAGTDTILDLIEPLGFKLDNKHLKRAGLDYWNK 60 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRP-K 243 + NL + L+ + + + ++ + + + K L+ G E GL Sbjct: 61 VQINYHQNLPEFLKTVENPKNLFLVSKFANQDYTDPDYSDPKQDYYLLFGKETTGLPEPF 120 Query: 244 TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279 ++ + I+ALN+SN+ A+ +Y Sbjct: 121 MRKNPEKAIRIPQDDDHIRALNLSNSCAIVIYEVLRQ 157 >gi|118588605|ref|ZP_01546013.1| probable tRNA/rRNA methyltransferase protein [Stappia aggregata IAM 12614] gi|118438591|gb|EAV45224.1| probable tRNA/rRNA methyltransferase protein [Stappia aggregata IAM 12614] Length = 270 Score = 55.6 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 19/50 (38%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + G E GL + + + L + +LN++ A V Y + Sbjct: 125 TGYLFGRERWGLNNEEVALSDEIVTLPVDPDFASLNIAQAVLVCAYEWRK 174 >gi|296453420|ref|YP_003660563.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp. longum JDM301] gi|296182851|gb|ADG99732.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. longum JDM301] Length = 282 Score = 55.6 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 24/46 (52%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 P+E + L+ GAEG GL K E A + ++ G ++++N Sbjct: 216 PMETYTFPKRCLLLFGAEGPGLSEKALELADDVVYISQFGSVRSIN 261 >gi|229846510|ref|ZP_04466618.1| rRNA methylase [Haemophilus influenzae 7P49H1] gi|229810603|gb|EEP46321.1| rRNA methylase [Haemophilus influenzae 7P49H1] gi|309972419|gb|ADO95620.1| Putative rRNA methylase [Haemophilus influenzae R2846] Length = 351 Score = 55.6 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 87/241 (36%), Gaps = 13/241 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97 ++ ++ +YG + A I +L AT ++ + V Sbjct: 111 KKNRAEEMK--VYGENACLALFAERPESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 168 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + + ++ G E H G+ L + T LD L++LD+VN+ NIG +LR+ Sbjct: 169 SEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPHKEDCLVLLDNVNNAQNIGGVLRT 227 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 F I+ + A + + GA + + S Sbjct: 228 CAYFGVKNIVADNVENLYSGASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHVSH 287 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVA 272 + PL++ +K+ +L +E T E + L + IK+ LN++ A V Sbjct: 288 NKQGDPLDKVRLKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVL 344 Query: 273 L 273 L Sbjct: 345 L 345 >gi|157368927|ref|YP_001476916.1| putative RNA methyltransferase [Serratia proteamaculans 568] gi|157320691|gb|ABV39788.1| RNA methyltransferase, TrmH family, group 1 [Serratia proteamaculans 568] Length = 228 Score = 55.6 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 24/71 (33%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + E+ + AL+ G E GL + E A + + M +LN+ Sbjct: 85 FHYYCTPQQLLGQLSERSQWVGQAALVFGREDSGLTNEELELADLLTGVPMQADYPSLNL 144 Query: 266 SNAAAVALYIT 276 A V Y Sbjct: 145 GQAVMVYCYQL 155 >gi|319775649|ref|YP_004138137.1| methyltransferase [Haemophilus influenzae F3047] gi|329122299|ref|ZP_08250887.1| tRNA/rRNA methyltransferase [Haemophilus aegyptius ATCC 11116] gi|317450240|emb|CBY86456.1| predicted methyltransferase [Haemophilus influenzae F3047] gi|327473860|gb|EGF19277.1| tRNA/rRNA methyltransferase [Haemophilus aegyptius ATCC 11116] Length = 351 Score = 55.6 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 84/240 (35%), Gaps = 11/240 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97 ++ ++ +YG + A I +L AT ++ + V Sbjct: 111 KKNRAEEMK--VYGENACLALFAERPESIVRLWATVQMSHKIGDVLSYLAENKKAYHVVD 168 Query: 98 PQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 + + ++ G + + +L LD L++LD+VN+ NIG +LR+ Sbjct: 169 SEELARVSGTEHHGGICLLVKKPRVFMLQGYLDIPHKEDCLVLLDNVNNAQNIGGVLRTC 228 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F I+ + A + + GA + + S + Sbjct: 229 AYFGVKNIVADNVENLYSGASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHVSHN 288 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273 PL++ +K+ +L +E T E + L + IK+ LN++ A V L Sbjct: 289 KQGDPLDKVRLKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVLL 345 >gi|330001784|ref|ZP_08304105.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS 92-3] gi|328537560|gb|EGF63784.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS 92-3] Length = 228 Score = 55.6 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 19/55 (34%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ + V Y Sbjct: 102 AQWMTHAALVFGREDSGLSNEELALADVLTGVPMAADYPSLNLGQSVMVYCYQLA 156 >gi|238892988|ref|YP_002917722.1| putative RNA methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|238545304|dbj|BAH61655.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 228 Score = 55.6 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 19/55 (34%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ + V Y Sbjct: 102 AQWMTHAALVFGREDSGLSNEELALADVLTGVPMAADYPSLNLGQSVMVYCYQLA 156 >gi|293392940|ref|ZP_06637257.1| RNA methyltransferase [Serratia odorifera DSM 4582] gi|291424474|gb|EFE97686.1| RNA methyltransferase [Serratia odorifera DSM 4582] Length = 225 Score = 55.6 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 26/71 (36%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + ++ E+ + AL+ G E GL + E A + + M +LN+ Sbjct: 85 FHYYCTPQALLEQLSERSQWMSQAALVFGREDSGLTNEELELADLLTGVPMQADYPSLNL 144 Query: 266 SNAAAVALYIT 276 A V Y Sbjct: 145 GQAVMVYCYQL 155 >gi|56707583|ref|YP_169479.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670054|ref|YP_666611.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|224456652|ref|ZP_03665125.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|254874404|ref|ZP_05247114.1| yjfH, tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604075|emb|CAG45072.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320387|emb|CAL08455.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|254840403|gb|EET18839.1| yjfH, tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158740|gb|ADA78131.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis NE061598] Length = 218 Score = 55.6 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 10/213 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99 +YG+H V + + K + NA +++ + V + + Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AV + L + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIGVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 L D +A++ GAEG G+R +T+ Sbjct: 184 LYSMNLVDSVAIVAGAEGSGMRQRTKAIVNPRV 216 >gi|54113813|gb|AAV29540.1| NT02FT1642 [synthetic construct] Length = 218 Score = 55.6 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 10/213 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99 +YG+H V + + K + NA +++ + V + + Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AV + L + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIGVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 L D +A++ GAEG G+R +T+ Sbjct: 184 LYSMNLVDSVAIVAGAEGSGMRQRTKAIVNPRV 216 >gi|89255916|ref|YP_513278.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115314398|ref|YP_763121.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|156501905|ref|YP_001427969.1| RNA methyltransferase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009182|ref|ZP_02274113.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Francisella tularensis subsp. holarctica FSC200] gi|254367276|ref|ZP_04983303.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica 257] gi|89143747|emb|CAJ78949.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115129297|gb|ABI82484.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134253093|gb|EBA52187.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica 257] gi|156252508|gb|ABU61014.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp. holarctica FTNF002-00] Length = 218 Score = 55.6 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 10/213 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99 +YG+H V + + K + NA +++ + V + + Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AV + L + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 L D +A++ GAEG G+R +T+ Sbjct: 184 LYSMNLVDSVAIVAGAEGSGMRQRTKAIVNPRV 216 >gi|146310227|ref|YP_001175301.1| putative RNA methyltransferase [Enterobacter sp. 638] gi|145317103|gb|ABP59250.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter sp. 638] Length = 228 Score = 55.6 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 24/71 (33%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + E+ K AL+ G E GL + E A + + M +LN+ Sbjct: 85 FHYYATPAELVPMLTEKSEWISKAALVFGREDSGLTNEELELADVLTGVPMVADYPSLNL 144 Query: 266 SNAAAVALYIT 276 A V Y Sbjct: 145 GQAVMVYCYQL 155 >gi|170768660|ref|ZP_02903113.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii TW07627] gi|170122764|gb|EDS91695.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii TW07627] Length = 228 Score = 55.2 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 21/53 (39%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + IAL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMNHIALVFGREDSGLTNEELALADILTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|296284574|ref|ZP_06862572.1| putative RNA methylase [Citromicrobium bathyomarinum JL354] Length = 160 Score = 55.2 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 2/136 (1%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 +VL + N GA+ R+ VA + ++ L ++ +HI + Sbjct: 8 IVLVNPEIAGNTGAVGRTCVALDMELVLIHPLGFTITDTRLKRAGLDYWQHIRLAEFRSW 67 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254 ++ Q + + Q + L+ G E KGL P+ E M L Sbjct: 68 EAFFEERSPRADQLFLFEEYAPRDFYQPEYPEDAYLVFGRETKGLPPEIVEAHRAQMVSL 127 Query: 255 HM-PGIIKALNVSNAA 269 M +++LN++N Sbjct: 128 PMKSDKVRSLNLANTV 143 >gi|197119062|ref|YP_002139489.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter bemidjiensis Bem] gi|197088422|gb|ACH39693.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter bemidjiensis Bem] Length = 245 Score = 55.2 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 19/51 (37%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++AL+ G E GL A + +LN+S A + Y Sbjct: 110 RMALVFGREDSGLTTDEVALCRWQATIETADEFGSLNLSQAVLIFCYEFLK 160 >gi|148827623|ref|YP_001292376.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittGG] gi|148718865|gb|ABQ99992.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittGG] Length = 371 Score = 55.2 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 84/240 (35%), Gaps = 11/240 (4%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97 ++ ++ +YG + A I +L AT ++ + V Sbjct: 131 KKNRAEEMK--VYGENACLALFAERPESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 188 Query: 98 PQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154 + + ++ G + + L LD L++LD+VN+ NIG +LR+ Sbjct: 189 SEELARVSGTEHHGGICLLVKKPRVFTLQGYLDIPHKEDCLVLLDNVNNAQNIGGVLRTC 248 Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 F I+ + +A + + GA + + S + Sbjct: 249 AYFGVKNIVADNVENLYSAASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQVIHVSHN 308 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273 PL++ +K+ +L +E T E + L + IK+ LN++ A V L Sbjct: 309 KQGDPLDKVRLKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVLL 365 >gi|297567088|ref|YP_003686060.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus silvanus DSM 9946] gi|296851537|gb|ADH64552.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus silvanus DSM 9946] Length = 253 Score = 55.2 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 20/51 (39%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K+AL+ G E GL + A + + LN++ A + Y Sbjct: 119 RGKVALVFGRETFGLTNDELDLAQYILRIPTAPEQTNLNLAQAVLLVAYEL 169 >gi|294012167|ref|YP_003545627.1| tRNA/rRNA methyltransferase [Sphingobium japonicum UT26S] gi|292675497|dbj|BAI97015.1| tRNA/rRNA methyltransferase [Sphingobium japonicum UT26S] Length = 350 Score = 55.2 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 20/54 (37%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + A + G E GL + A + + + +LN++ A + Y Sbjct: 217 TGRSAYVFGPERSGLETEDVALARKILTVPINPEFGSLNLAQAVILCAYEWSKQ 270 >gi|254447029|ref|ZP_05060496.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium HTCC5015] gi|198263168|gb|EDY87446.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium HTCC5015] Length = 239 Score = 55.2 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 28/87 (32%) Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + + + + + + ++A++LG E GL + Sbjct: 69 CHWVVATSARRRGYEWPMSNARQSMSEAYRRSQEGQQVAILLGPERSGLDSDSLRLCDQH 128 Query: 252 AHLHMPGIIKALNVSNAAAVALYITQN 278 ++ LNV+ AA V Y Sbjct: 129 CYISANPDYPVLNVAQAAQVLTYELYQ 155 >gi|254373233|ref|ZP_04988722.1| rRNA methyltransferase [Francisella tularensis subsp. novicida GA99-3549] gi|151570960|gb|EDN36614.1| rRNA methyltransferase [Francisella novicida GA99-3549] Length = 247 Score = 55.2 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++KIA++ G E GL + A++ +LN++ A + Y Sbjct: 111 DEKIAILFGRERTGLLNGELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQ 164 >gi|119713263|gb|ABL97329.1| RNA methyltransferase [uncultured marine bacterium HF10_12C08] Length = 245 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 22/57 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 ND I ++ G E GL T + +LN+S+A V Y + K Sbjct: 108 NDSIGVVFGGEASGLTNDHLSLITKCVTIDTHENFSSLNLSHAVNVFCYSLFSQVFK 164 >gi|229844416|ref|ZP_04464556.1| rRNA methylase [Haemophilus influenzae 6P18H1] gi|229812665|gb|EEP48354.1| rRNA methylase [Haemophilus influenzae 6P18H1] Length = 351 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 92/241 (38%), Gaps = 13/241 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97 ++ ++ +YG + A + I +L AT ++ + V Sbjct: 111 KKNRAEEMK--VYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 168 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + + ++ G E H G+ L + T LD RN L++LD+VN+ NIG +LR+ Sbjct: 169 SEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRT 227 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 F I+ + +A + + GA + +Q S Sbjct: 228 CAYFGVKNIVADNVENLYSAASMRVAEGGAEYIRVLETDYIDSALMQLRKSGYQVIHVSH 287 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVA 272 + PL++ +K+ +L +E T E + L + IK+ LN++ A V Sbjct: 288 NKQGDPLDKVRLKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVL 344 Query: 273 L 273 L Sbjct: 345 L 345 >gi|242238023|ref|YP_002986204.1| RNA methyltransferase [Dickeya dadantii Ech703] gi|242130080|gb|ACS84382.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii Ech703] Length = 232 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 20/53 (37%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +AL+ G E GL + A + + M +LN+ A V Y Sbjct: 103 QWVKSVALVFGREDSGLTNEELALADILTGVPMAADYPSLNLGQAVMVYCYQL 155 >gi|240949299|ref|ZP_04753642.1| predicted rRNA methyltransferase [Actinobacillus minor NM305] gi|240296250|gb|EER46899.1| predicted rRNA methyltransferase [Actinobacillus minor NM305] Length = 332 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 95/270 (35%), Gaps = 15/270 (5%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70 KI S+ K ++ ++ + ++ ++ +YG ++ A I + Sbjct: 62 KIQVKGSSNLQKEKKTGPL--SPRAPEKIKKNRAEEMK--VYGENSCLAVFQQRPESIVR 117 Query: 71 LLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128 L AT +L H V + ++K+ G E H + L +L+ Sbjct: 118 LWATVEGAKKLGDMLSYLAEHKKAYHVVSREEMEKVTGTE-HHGDVCLLIKKAPVFSLEG 176 Query: 129 V----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 R L++LD+VN+ N+G I+R+ + GIIT + SA + G Sbjct: 177 YLQIARARDCLVLLDNVNNAQNVGGIIRTCAFYGVKGIITESNDRLNSSAAARVAEGGLE 236 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 Q ++ L + +K+ +L +E + + Sbjct: 237 FVHALETKHKQIALQQLRNAGYQIIHLTRQKQAPTLTKIALAEKVVFVL-SEI--VSNEI 293 Query: 245 QETATSMAHLH-MPGIIKALNVSNAAAVAL 273 + + L + +LNV+ A + L Sbjct: 294 EFSEDITVQLSVTNPLSSSLNVAVNAGILL 323 >gi|152996098|ref|YP_001340933.1| RNA methyltransferase [Marinomonas sp. MWYL1] gi|150837022|gb|ABR70998.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas sp. MWYL1] Length = 260 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 18/52 (34%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + +A++ G E GL ++ LN+S A + Y Sbjct: 106 DHNVAIVFGRETTGLLNDEIAQCHRQVYIDANDEYPVLNISQAVQIVTYEIW 157 >gi|227114272|ref|ZP_03827928.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 228 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 24/72 (33%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + E+ AL+ G E GL + E A + + M +LN+ Sbjct: 85 YHYYCTPAELTDVLQEKVQWMASAALVFGREDVGLTNEELELADVLTGVPMKADYPSLNL 144 Query: 266 SNAAAVALYITQ 277 A V Y Sbjct: 145 GQAVMVYCYQLA 156 >gi|301169124|emb|CBW28721.1| predicted methyltransferase [Haemophilus influenzae 10810] Length = 351 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 91/241 (37%), Gaps = 13/241 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97 ++ ++ +YG + A + I +L AT ++ + V Sbjct: 111 KKNRAEEMK--VYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 168 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + + ++ G E H G+ L + T LD RN L++LD+VN+ NIG +LR+ Sbjct: 169 SEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRT 227 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 F I+ + A + + GA + + S L Sbjct: 228 CAYFGVKNIVADNVENLYSGASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHVLH 287 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVA 272 + PL++ +K+ +L +E T E + L + IK+ LN++ A V Sbjct: 288 NKQGDPLDKVRLKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVL 344 Query: 273 L 273 L Sbjct: 345 L 345 >gi|110833374|ref|YP_692233.1| RNA methyltransferase [Alcanivorax borkumensis SK2] gi|110646485|emb|CAL15961.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax borkumensis SK2] Length = 261 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +IA++ G E +GL + LNV++A + Y + Sbjct: 112 RIAVLFGREDRGLTNDELRRCNLHVSVPANPEYGVLNVASAVQLISYELR 161 >gi|270263887|ref|ZP_06192155.1| putative RNA methyltransferase [Serratia odorifera 4Rx13] gi|270042080|gb|EFA15176.1| putative RNA methyltransferase [Serratia odorifera 4Rx13] Length = 228 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 25/71 (35%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + E+ ++ AL+ G E GL + E A + + M +LN+ Sbjct: 85 FHYYCTPQQLLGQLGERSQWVNQAALVFGREDSGLTNEELELADLLTGVPMQADYPSLNL 144 Query: 266 SNAAAVALYIT 276 A V Y Sbjct: 145 GQAVMVYCYQL 155 >gi|241951390|ref|XP_002418417.1| 21s rRNA [GM2251] 2'o-methyltransferase; mitochondrial large ribosomal RNA ribose methylase, putative; ribose methyltransferase, putative [Candida dubliniensis CD36] gi|223641756|emb|CAX43718.1| 21s rRNA [GM2251] 2'o-methyltransferase [Candida dubliniensis CD36] Length = 440 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVAL 273 + LI+G+EG G+R + + + + I+ +LN A V L Sbjct: 386 PVMLIIGSEGSGVRTNMKMRSDYLVGIPKLRRNDNIVDSLNAGVATGVIL 435 Score = 45.2 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 45/120 (37%), Gaps = 14/120 (11%) Query: 8 KSEKIFSLKDSHYAKL-RRNHRDYKKMQSFNQKSRHTSQPEN-------------LFLYG 53 + + ++K +H L + + + ++ ++ ++++ + +++G Sbjct: 90 RQRRFRAMKIAHEKSLQEKANEERERARALAREAKGFKTSNSNYDTVVDRNDTIFDYVFG 149 Query: 54 VHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 H V A L R++ L N + A + K + + I+ K VH G Sbjct: 150 THPVKAVLAAGKRRMLDLYTFNNDDPDIVELAVEKYGITPKRLKDKNALNILCKNGVHNG 209 >gi|311107734|ref|YP_003980587.1| methyltransferase [Achromobacter xylosoxidans A8] gi|310762423|gb|ADP17872.1| RNA methyltransferase, TrmH family, group 1 family protein [Achromobacter xylosoxidans A8] Length = 263 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A++LG E GL + H+ +LNV+ A +A + + Sbjct: 119 AVVLGTERAGLTNAQIALCHRICHIPANPEYSSLNVAQALQLAAWELR 166 >gi|293606592|ref|ZP_06688948.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Achromobacter piechaudii ATCC 43553] gi|292814977|gb|EFF74102.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Achromobacter piechaudii ATCC 43553] Length = 252 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A++LG E GL + H+ +LNV+ A +A + + Sbjct: 108 AVVLGTERAGLTNAQIALCHRICHIPANPEYSSLNVAQALQLAAWELR 155 >gi|262044954|ref|ZP_06017996.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037681|gb|EEW38910.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 262 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 20/55 (36%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + AL+ G E GL + A + + M +LN+ + V Y Sbjct: 102 AQWMNHTALVFGREDAGLTNEELALADVLTGVPMAADYPSLNLGQSVMVYCYQLA 156 >gi|152973321|ref|YP_001338467.1| putative RNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150958170|gb|ABR80200.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 228 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 20/55 (36%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + AL+ G E GL + A + + M +LN+ + V Y Sbjct: 102 AQWMNHTALVFGREDAGLTNEELALADVLTGVPMAADYPSLNLGQSVMVYCYQLA 156 >gi|289425727|ref|ZP_06427482.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187] gi|289427937|ref|ZP_06429641.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] gi|295131542|ref|YP_003582205.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137] gi|289153833|gb|EFD02539.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187] gi|289158820|gb|EFD07020.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] gi|291376685|gb|ADE00540.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137] Length = 226 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 5/159 (3%) Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 + V T + LDA R+ L + + + NIG+++R+A AF+ + Sbjct: 50 DRRNVIDRYRYWTMEAIVADLDAQRSP-LHVAIQNWEHDFNIGSVVRTANAFNVAAVHIL 108 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 R + + + H + + G + S + Sbjct: 109 GRRRWNRRGAMVTDRYLHVYHHSDVPSFLHWLDEHGVTPVGVDNLPGSVPLET----VQL 164 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L+ G+EG GL + + + + G +++N Sbjct: 165 PQDCCLVFGSEGPGLTDEVVKGCEQLVAITQYGSTRSMN 203 >gi|288937243|ref|YP_003441302.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola At-22] gi|288891952|gb|ADC60270.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola At-22] Length = 228 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 19/55 (34%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ + V Y Sbjct: 102 AQWMTHAALVFGREDSGLSNEELALADVLTGVPMVADYPSLNLGQSVMVYCYQLA 156 >gi|206580923|ref|YP_002240548.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae 342] gi|290512648|ref|ZP_06552014.1| tRNA/rRNA methyltransferase [Klebsiella sp. 1_1_55] gi|206569981|gb|ACI11757.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae 342] gi|289774989|gb|EFD82991.1| tRNA/rRNA methyltransferase [Klebsiella sp. 1_1_55] Length = 228 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 19/55 (34%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ + V Y Sbjct: 102 AQWMTHAALVFGREDSGLSNEELALADVLTGVPMVADYPSLNLGQSVMVYCYQLA 156 >gi|237729301|ref|ZP_04559782.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226909030|gb|EEH94948.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 228 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 20/53 (37%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMEHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|148825296|ref|YP_001290049.1| rRNA methylase [Haemophilus influenzae PittEE] gi|148715456|gb|ABQ97666.1| rRNA methylase [Haemophilus influenzae PittEE] Length = 234 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 87/230 (37%), Gaps = 11/230 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKE 108 +YG + A I +L AT ++ + V + + ++ G E Sbjct: 3 VYGENACLALFAERPESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVDSEELARVSGTE 62 Query: 109 AVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 H G+ L + T LD RN L++LD+VN+ NIG +LR+ F I+ Sbjct: 63 -HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRTCAYFGVKNIVA 121 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + +A + + GA + +Q S + PL++ Sbjct: 122 DNVENLYSAASMRVAEGGAEYIRVLETDDIDSALMQLRKSGYQVIHVSHNKQGDPLDKVR 181 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273 +K+ +L +E T E + L + IK+ LN++ A V L Sbjct: 182 LKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVLL 228 >gi|291455964|ref|ZP_06595354.1| RNA methyltransferase, TrmH family [Bifidobacterium breve DSM 20213] gi|291382373|gb|EFE89891.1| RNA methyltransferase, TrmH family [Bifidobacterium breve DSM 20213] Length = 312 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 24/46 (52%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 P+E + L+ GAEG GL K E A + ++ G ++++N Sbjct: 246 PMETYAFPKRCLLLFGAEGPGLSSKALELADDVVYISQFGSVRSIN 291 >gi|319898055|ref|YP_004136252.1| methyltransferase [Haemophilus influenzae F3031] gi|317433561|emb|CBY81945.1| predicted methyltransferase [Haemophilus influenzae F3031] Length = 351 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 90/241 (37%), Gaps = 13/241 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97 ++ ++ +YG + A + I +L AT ++ + V Sbjct: 111 KKNRAEEMK--VYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 168 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + + ++ G E H G+ L + T LD RN L++LD+VN+ NIG +LR+ Sbjct: 169 SEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRT 227 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 F I+ + A + + GA + + S Sbjct: 228 CAYFGVKNIVADNVENLYSGASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQVIHVSH 287 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVA 272 + PL++ +K+ +L +E T E + L + IK+ LN++ A V Sbjct: 288 NKQGNPLDKVRLKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVL 344 Query: 273 L 273 L Sbjct: 345 L 345 >gi|121604287|ref|YP_981616.1| tRNA/rRNA methyltransferase SpoU [Polaromonas naphthalenivorans CJ2] gi|120593256|gb|ABM36695.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas naphthalenivorans CJ2] Length = 311 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 21/57 (36%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + D +A + G+E G++ + + +LN+ A + Y + Sbjct: 154 HPAQRPDSVAFLFGSERFGMQNEDVYRCHVALSIPTDPKFGSLNLGAAVQLIAYDWR 210 >gi|145630401|ref|ZP_01786182.1| rRNA methylase [Haemophilus influenzae R3021] gi|144984136|gb|EDJ91573.1| rRNA methylase [Haemophilus influenzae R3021] Length = 351 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 91/241 (37%), Gaps = 13/241 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97 ++ ++ +YG + A + I +L AT ++ + V Sbjct: 111 KKNRAEEMK--VYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 168 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + + ++ G E H G+ L + T LD RN L++LD+VN+ NIG +LR+ Sbjct: 169 SEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRT 227 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 F I+ + +A + + GA + + S Sbjct: 228 CAYFGVKNIVADNVENLYSAASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQVIHVSH 287 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVA 272 + PL++ +K+ +L +E T E + L + IK+ LN++ A V Sbjct: 288 NKQGDPLDKVRLKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVL 344 Query: 273 L 273 L Sbjct: 345 L 345 >gi|227327991|ref|ZP_03832015.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 228 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 24/72 (33%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + + E+ AL+ G E GL + E A + + M +LN+ Sbjct: 85 YHYYCTPAELTGVLQEKVQWMASAALVFGREDVGLTNEELELADVLTGVPMKADYPSLNL 144 Query: 266 SNAAAVALYITQ 277 A V Y Sbjct: 145 GQAVMVYCYQLA 156 >gi|170584264|ref|XP_001896925.1| RNA methyltransferase, TrmH family protein [Brugia malayi] gi|158595702|gb|EDP34233.1| RNA methyltransferase, TrmH family protein [Brugia malayi] Length = 1402 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 22/54 (40%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ L+LG E +G+ + G ++LNV A+ +Y Sbjct: 749 HKIRFPSKMVLLLGNEKEGIPMHLLGYLDKTVEVLQIGHTRSLNVHVTGALLIY 802 >gi|326387396|ref|ZP_08209005.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM 19370] gi|326208052|gb|EGD58860.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM 19370] Length = 233 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + A++ G E GL A ++ + + +LN++ A + Y H Sbjct: 100 PGQCAIVFGPERSGLETDDVALARTIITVPINPEFASLNLAQAVILCAYEWSKH 153 >gi|94497531|ref|ZP_01304100.1| rRNA methylase [Sphingomonas sp. SKA58] gi|94422948|gb|EAT07980.1| rRNA methylase [Sphingomonas sp. SKA58] Length = 357 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 19/54 (35%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + A + G E GL A + + + +LN++ A + Y Sbjct: 224 TGRSAFVFGPERSGLETDDVALARKILTVPINPDFGSLNLAQAVILCAYEWSKQ 277 >gi|317404811|gb|EFV85188.1| methyltransferase [Achromobacter xylosoxidans C54] Length = 263 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A++LG E GL + H+ +LNV+ A +A + + Sbjct: 119 AIVLGTERAGLTNAQIGLCHRICHIPANPEYSSLNVAQALQLAAWELR 166 >gi|547828|sp|P37006|LAST_SERMA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase LasT Length = 196 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 25/72 (34%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 ++ E++ + AL+ G E GL + A + + M +LN+ Sbjct: 52 FHYYCTPPELLEQLSERKQWVGQAALVFGREDSGLTNEELALADLLTGVPMQADYPSLNL 111 Query: 266 SNAAAVALYITQ 277 A V Y Sbjct: 112 GQAVMVYCYQLA 123 >gi|300710881|ref|YP_003736695.1| hypothetical protein HacjB3_07590 [Halalkalicoccus jeotgali B3] gi|299124564|gb|ADJ14903.1| hypothetical protein HacjB3_07590 [Halalkalicoccus jeotgali B3] Length = 238 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 21/49 (42%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL + + + LN+ AA VALY + Sbjct: 109 VALVFGRERVGLMNEELARLDQICAIPASADYPVLNLGQAATVALYELR 157 >gi|145632669|ref|ZP_01788403.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655] gi|144986864|gb|EDJ93416.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655] Length = 351 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 88/241 (36%), Gaps = 13/241 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97 ++ ++ +YG + A + I +L AT ++ + V Sbjct: 111 KKNRAEEMK--VYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 168 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + + ++ G E H G+ L + T LD L++LD+VN+ NIG +LR+ Sbjct: 169 SEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPHKEDCLVLLDNVNNAQNIGGVLRT 227 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 F I+ + A + + GA + + S Sbjct: 228 CAYFGVKNIVADNVENLYSGASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHVSH 287 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVA 272 + PL++ +K+ +L +E T E + L + IK+ LN++ A V Sbjct: 288 NKQGDPLDKVRLKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVL 344 Query: 273 L 273 L Sbjct: 345 L 345 >gi|283788579|ref|YP_003368444.1| RNA methyltransferase [Citrobacter rodentium ICC168] gi|282952033|emb|CBG91762.1| putative RNA methyltransferase [Citrobacter rodentium ICC168] Length = 206 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 20/53 (37%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + AL+ G E GL + A + + M +LN+ A V Y Sbjct: 82 WMNHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 134 >gi|165975661|ref|YP_001651254.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307249419|ref|ZP_07531410.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|165875762|gb|ABY68810.1| conserved putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306858561|gb|EFM90626.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 345 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 85/259 (32%), Gaps = 16/259 (6%) Query: 27 HRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81 + K+ ++ R + E + +YG + A I +L AT +L Sbjct: 82 NNTMKEKKTGPLSPRAPEKIKKNRAEEMKVYGENACIALFKQRPDAIVRLWATVEGAKKL 141 Query: 82 DWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQLLM 136 H V ++++ G E L L R L+ Sbjct: 142 GDILSYLAEHKKAYHVVDRAEMERVTGTEHHGDVCLLVKKAVPFSLEGYLQVPRKRDCLV 201 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +LD VN+ N+G I+R+ + +G+I + + SA + G P Sbjct: 202 LLDAVNNAQNVGGIIRTCAFYGVNGVIVESADTLNSSAAARVAEGGLEFVRPLETKHKQI 261 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLH 255 Q ++ + PL + K +L +E + + E + L Sbjct: 262 ALTQLRNAGYQVVHLTRNKQAAPLAKTKLAAKTVFVL-SE---IPAQDIEYPEDTTVQLS 317 Query: 256 MPGIIKA-LNVSNAAAVAL 273 + + LNV+ + + L Sbjct: 318 FENPLNSGLNVAVSTGILL 336 >gi|260223171|emb|CBA33466.1| hypothetical protein Csp_B19200 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 286 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 18/52 (34%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 I + G+E G+R + + +LN+ A V Y + Sbjct: 134 QQGIGFLFGSERFGMRNEDVYRCHVCLSIPSNPSFGSLNIGAALQVIAYEWR 185 >gi|313836409|gb|EFS74123.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL037PA2] gi|314928873|gb|EFS92704.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL044PA1] gi|314971249|gb|EFT15347.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL037PA3] Length = 164 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 17/42 (40%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L+ G+EG GL + + + + G +++N Sbjct: 100 AQLPQDCCLVFGSEGPGLTDEIVKGCEQLVAITQYGSTRSMN 141 >gi|328906380|gb|EGG26155.1| RNA methyltransferase, TrmH family [Propionibacterium sp. P08] Length = 196 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 5/159 (3%) Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 + V T + LD R+ L + + + NIG+++R+A AF+ + Sbjct: 20 DRRNVIDRYRYWTMEAIVADLDTQRSR-LHVAIQNWEHDFNIGSVVRTANAFNVSAVHIL 78 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 R ++ + + H P + + G + S + Sbjct: 79 GRRRWNKRGAMVTDRYLHVYHHPDVPSFLQWLDEHGVTPVGVDNLSGSVPLET----AQL 134 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L+ G+EG GL + + + + G +++N Sbjct: 135 PQDCCLVFGSEGPGLTDEIVKGCEQLVAITQYGSTRSMN 173 >gi|314988238|gb|EFT32329.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL005PA2] gi|314990324|gb|EFT34415.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL005PA3] Length = 164 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 4/132 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L + + + NIG+++R+A AF+ + R + + + H P + Sbjct: 14 PLHVAIQNWEHDFNIGSVVRTANAFNVAAVHILGRRRWNRRGAMVTDRYLHVYHHPDVPS 73 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + G + S + L+ G+EG GL + + + Sbjct: 74 FLHWLDEHGVTPVGVDNLPGSVPLET----VQLPQDCCLVFGSEGPGLTDEVVKGCEQLV 129 Query: 253 HLHMPGIIKALN 264 + G +++N Sbjct: 130 AITQYGSTRSMN 141 >gi|307292706|ref|ZP_07572552.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum L-1] gi|306880772|gb|EFN11988.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum L-1] Length = 351 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + A + G E GL + A + + + +LN++ A + Y Sbjct: 219 GRSAYVFGPERSGLETEDVALARKILTVPINPEFGSLNLAQAVILCAYEWSKQ 271 >gi|303287456|ref|XP_003063017.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455653|gb|EEH52956.1| predicted protein [Micromonas pusilla CCMP1545] Length = 513 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 15/66 (22%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK---------------ALNVSNAAA 270 K+A++ G E GL + TA + + G +LN+S A Sbjct: 224 RGKVAVLFGNERTGLTNEELGTAHAAVAIPTAGQGSLCRKSLKYTGGTGPTSLNLSQAVG 283 Query: 271 VALYIT 276 V Y Sbjct: 284 VIAYEM 289 >gi|221368992|ref|YP_002520088.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sphaeroides KD131] gi|221162044|gb|ACM03015.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sphaeroides KD131] Length = 243 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 23/53 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ ++ G E GL + A ++ + + +LN++ A + Y + Sbjct: 109 RRVGILFGPERTGLENEDVALANAIVTVPVNPEFFSLNLAQCALLLAYEWRRQ 161 >gi|328543187|ref|YP_004303296.1| tRNA/rRNA methyltransferase protein [polymorphum gilvum SL003B-26A1] gi|326412933|gb|ADZ69996.1| Probable tRNA/rRNA methyltransferase protein [Polymorphum gilvum SL003B-26A1] Length = 289 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 18/50 (36%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + G E GL A + L + +LN++ A V Y + Sbjct: 125 TGYLFGRERWGLNNDEVALADEIVTLPVDPAFASLNIAQAVLVCAYEWRK 174 >gi|94500611|ref|ZP_01307141.1| rRNA methyltransferase, TrmH family protein [Oceanobacter sp. RED65] gi|94427166|gb|EAT12146.1| rRNA methyltransferase, TrmH family protein [Oceanobacter sp. RED65] Length = 262 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 1/78 (1%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 I ++ + EI K+A++ G E GL + A + LNV Sbjct: 104 HPWPIKEVREAAAHINDEIPQGKVAIMFGPERMGLNNEELRLAQFHMDIPGNPDYPVLNV 163 Query: 266 SNAAAVALYIT-QNHFAK 282 + A V Y ++ Sbjct: 164 AQAVQVVCYELFMAQRSQ 181 >gi|50550413|ref|XP_502679.1| YALI0D10989p [Yarrowia lipolytica] gi|49648547|emb|CAG80867.1| YALI0D10989p [Yarrowia lipolytica] Length = 1383 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + K ++LG E +G+ + G+I+++N+ AAAV ++ Sbjct: 1324 FVFPKKSLILLGMEREGIPGNLLAELDYAVEIKQIGMIRSMNIQTAAAVIVHAYSMQ 1380 >gi|58040206|ref|YP_192170.1| SpoU rRNA methylase family protein [Gluconobacter oxydans 621H] gi|58002620|gb|AAW61514.1| SpoU rRNA methylase family protein [Gluconobacter oxydans 621H] Length = 264 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 20/48 (41%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + ++ G E GL + A ++ + +LN++ A + Y Sbjct: 129 RTGILFGPERAGLDNEDMARADTLVRYPLNPKFMSLNLAQAVLIMAYE 176 >gi|145636308|ref|ZP_01791977.1| rRNA methylase [Haemophilus influenzae PittHH] gi|145270473|gb|EDK10407.1| rRNA methylase [Haemophilus influenzae PittHH] Length = 234 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 87/230 (37%), Gaps = 11/230 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKE 108 +YG + A + I +L AT ++ + V + + ++ G E Sbjct: 3 VYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVDSEELARVSGTE 62 Query: 109 AVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164 H G+ L + T LD RN L++LD+VN+ NIG +LR+ F I+ Sbjct: 63 -HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRTCAYFGVKNIVA 121 Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224 + +A + + GA + + S + PL++ Sbjct: 122 DNVENLYSAASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHVSHNKQGDPLDKVR 181 Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273 +K+ +L +E T E + L + IK+ LN++ A V L Sbjct: 182 LKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVLL 228 >gi|160897751|ref|YP_001563333.1| tRNA/rRNA methyltransferase SpoU [Delftia acidovorans SPH-1] gi|160363335|gb|ABX34948.1| tRNA/rRNA methyltransferase (SpoU) [Delftia acidovorans SPH-1] Length = 275 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 1/51 (1%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +A + G E G+ + + +LN+ A V Y Sbjct: 143 VAFLFGCERFGMSNDDVYRSDVALSIPSNPQFGSLNLGAAIQVVAYE-WRQ 192 >gi|251788172|ref|YP_003002893.1| putative RNA methyltransferase [Dickeya zeae Ech1591] gi|247536793|gb|ACT05414.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591] Length = 233 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 19/54 (35%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 103 QWVKSAALVFGREDSGLTNEELALADILTGVPMAADYPSLNLGQAVMVYCYQLA 156 >gi|87200257|ref|YP_497514.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM 12444] gi|87135938|gb|ABD26680.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM 12444] Length = 251 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + A+I G E GL A ++ + + +LN++ A + Y H Sbjct: 111 SGRSAIIFGPERSGLETDDVALARAIVTVPINPEFGSLNLAQAVILCAYEWSKH 164 >gi|333022343|gb|EGK41581.1| hypothetical protein SFK304_0112 [Shigella flexneri K-304] Length = 261 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|333012280|gb|EGK31662.1| hypothetical protein SFK227_5376 [Shigella flexneri K-227] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|333011385|gb|EGK30799.1| hypothetical protein SFK272_0343 [Shigella flexneri K-272] Length = 261 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|333010495|gb|EGK29928.1| hypothetical protein SFVA6_0291 [Shigella flexneri VA-6] Length = 261 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|333009340|gb|EGK28796.1| hypothetical protein SFK218_0239 [Shigella flexneri K-218] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|332748915|gb|EGJ79339.1| hypothetical protein SF434370_4804 [Shigella flexneri 4343-70] Length = 261 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|332281315|ref|ZP_08393728.1| RNA methyltransferase [Shigella sp. D9] gi|332103667|gb|EGJ07013.1| RNA methyltransferase [Shigella sp. D9] Length = 235 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 111 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 163 >gi|332083398|gb|EGI88629.1| hypothetical protein SB521682_5281 [Shigella boydii 5216-82] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|323964754|gb|EGB60222.1| RNA methyltransferase [Escherichia coli M863] gi|323975837|gb|EGB70933.1| RNA methyltransferase [Escherichia coli TW10509] gi|327250029|gb|EGE61759.1| hypothetical protein ECSTEC7V_5191 [Escherichia coli STEC_7v] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|323939780|gb|EGB35982.1| RNA methyltransferase [Escherichia coli E482] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|323190317|gb|EFZ75593.1| hypothetical protein ECRN5871_1472 [Escherichia coli RN587/1] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|323171419|gb|EFZ57066.1| hypothetical protein ECLT68_4062 [Escherichia coli LT-68] Length = 268 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|320654588|gb|EFX22600.1| putative RNA methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|320177676|gb|EFW52665.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii ATCC 9905] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|309704911|emb|CBJ04264.1| putative RNA methyltransferase [Escherichia coli ETEC H10407] Length = 206 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|331681388|ref|ZP_08382025.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli H299] gi|331081609|gb|EGI52770.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli H299] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|331661363|ref|ZP_08362287.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli TA143] gi|331061278|gb|EGI33241.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli TA143] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|331650890|ref|ZP_08351918.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli M718] gi|331051344|gb|EGI23393.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli M718] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|331645102|ref|ZP_08346213.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli M605] gi|330909848|gb|EGH38358.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli AA86] gi|331045859|gb|EGI17978.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli M605] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|307313663|ref|ZP_07593282.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W] gi|306906486|gb|EFN36999.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W] gi|315063704|gb|ADT78031.1| predicted rRNA methyltransferase [Escherichia coli W] gi|323380214|gb|ADX52482.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli KO11] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|306815400|ref|ZP_07449549.1| putative RNA methyltransferase [Escherichia coli NC101] gi|305851062|gb|EFM51517.1| putative RNA methyltransferase [Escherichia coli NC101] gi|324007734|gb|EGB76953.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 57-2] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|300816031|ref|ZP_07096254.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 107-1] gi|300531238|gb|EFK52300.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 107-1] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|300939394|ref|ZP_07154060.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 21-1] gi|300455722|gb|EFK19215.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 21-1] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|300905395|ref|ZP_07123164.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 84-1] gi|300947474|ref|ZP_07161658.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 116-1] gi|300955633|ref|ZP_07167988.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 175-1] gi|301303509|ref|ZP_07209632.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 124-1] gi|300317470|gb|EFJ67254.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 175-1] gi|300402764|gb|EFJ86302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 84-1] gi|300452908|gb|EFK16528.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 116-1] gi|300841236|gb|EFK68996.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 124-1] gi|315255733|gb|EFU35701.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 85-1] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|301024668|ref|ZP_07188315.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 196-1] gi|299880311|gb|EFI88522.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 196-1] Length = 235 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 111 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 163 >gi|297519997|ref|ZP_06938383.1| putative RNA methyltransferase [Escherichia coli OP50] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|293408092|ref|ZP_06651932.1| RNA methyltransferase [Escherichia coli B354] gi|291472343|gb|EFF14825.1| RNA methyltransferase [Escherichia coli B354] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|281181548|dbj|BAI57878.1| conserved hypothetical protein [Escherichia coli SE15] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|253774967|ref|YP_003037798.1| RNA methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254164328|ref|YP_003047438.1| putative RNA methyltransferase [Escherichia coli B str. REL606] gi|300930632|ref|ZP_07146021.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 187-1] gi|253326011|gb|ACT30613.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976231|gb|ACT41902.1| predicted rRNA methyltransferase [Escherichia coli B str. REL606] gi|253980389|gb|ACT46059.1| predicted rRNA methyltransferase [Escherichia coli BL21(DE3)] gi|300461483|gb|EFK24976.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 187-1] gi|313848845|emb|CAQ34761.2| predicted rRNA methyltransferase [Escherichia coli BL21(DE3)] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|291285838|ref|YP_003502656.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O55:H7 str. CB9615] gi|293417877|ref|ZP_06660499.1| tRNA/rRNA methyltransferase [Escherichia coli B185] gi|209748734|gb|ACI72674.1| hypothetical protein ECs5361 [Escherichia coli] gi|290765711|gb|ADD59672.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O55:H7 str. CB9615] gi|291430595|gb|EFF03593.1| tRNA/rRNA methyltransferase [Escherichia coli B185] gi|320638624|gb|EFX08329.1| putative RNA methyltransferase [Escherichia coli O157:H7 str. G5101] gi|320649071|gb|EFX17653.1| putative RNA methyltransferase [Escherichia coli O157:H- str. H 2687] gi|320660301|gb|EFX27805.1| putative RNA methyltransferase [Escherichia coli O55:H7 str. USDA 5905] gi|320665397|gb|EFX32481.1| putative RNA methyltransferase [Escherichia coli O157:H7 str. LSU-61] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|209748728|gb|ACI72671.1| hypothetical protein ECs5361 [Escherichia coli] gi|320643913|gb|EFX13033.1| putative RNA methyltransferase [Escherichia coli O157:H- str. 493-89] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|218708087|ref|YP_002415606.1| putative RNA methyltransferase [Escherichia coli UMN026] gi|293403074|ref|ZP_06647171.1| RNA methyltransferase [Escherichia coli FVEC1412] gi|298378601|ref|ZP_06988485.1| RNA methyltransferase [Escherichia coli FVEC1302] gi|300896760|ref|ZP_07115266.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 198-1] gi|301024920|ref|ZP_07188532.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 69-1] gi|218435184|emb|CAR16142.1| rRNA methyltransferase [Escherichia coli UMN026] gi|291429989|gb|EFF03003.1| RNA methyltransferase [Escherichia coli FVEC1412] gi|298280935|gb|EFI22436.1| RNA methyltransferase [Escherichia coli FVEC1302] gi|300359416|gb|EFJ75286.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 198-1] gi|300396295|gb|EFJ79833.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 69-1] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|215489715|ref|YP_002332146.1| putative RNA methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312966121|ref|ZP_07780347.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli 2362-75] gi|215267787|emb|CAS12251.1| predicted rRNA methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312289364|gb|EFR17258.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli 2362-75] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|170683598|ref|YP_001746860.1| putative RNA methyltransferase [Escherichia coli SMS-3-5] gi|170521316|gb|ACB19494.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli SMS-3-5] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|117626762|ref|YP_860085.1| putative RNA methyltransferase [Escherichia coli APEC O1] gi|218561635|ref|YP_002394548.1| RNA methyltransferase [Escherichia coli S88] gi|331661038|ref|ZP_08361970.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli TA206] gi|115515886|gb|ABJ03961.1| putative rRNA methyltransferase [Escherichia coli APEC O1] gi|218368404|emb|CAR06224.1| rRNA methyltransferase [Escherichia coli S88] gi|222036146|emb|CAP78891.1| Uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli LF82] gi|294490761|gb|ADE89517.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli IHE3034] gi|307629574|gb|ADN73878.1| putative RNA methyltransferase [Escherichia coli UM146] gi|312949034|gb|ADR29861.1| putative RNA methyltransferase [Escherichia coli O83:H1 str. NRG 857C] gi|315284984|gb|EFU44429.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 110-3] gi|315298366|gb|EFU57621.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 16-3] gi|323950509|gb|EGB46387.1| RNA methyltransferase [Escherichia coli H252] gi|331052080|gb|EGI24119.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli TA206] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|110808190|ref|YP_691710.1| putative RNA methyltransferase [Shigella flexneri 5 str. 8401] gi|110617738|gb|ABF06405.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|91214121|ref|YP_544107.1| putative RNA methyltransferase [Escherichia coli UTI89] gi|237704139|ref|ZP_04534620.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|91075695|gb|ABE10576.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli UTI89] gi|226902051|gb|EEH88310.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] Length = 235 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 111 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 163 >gi|82779653|ref|YP_406002.1| putative RNA methyltransferase [Shigella dysenteriae Sd197] gi|309787372|ref|ZP_07681984.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella dysenteriae 1617] gi|81243801|gb|ABB64511.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|308924950|gb|EFP70445.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella dysenteriae 1617] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|74314837|ref|YP_313256.1| putative RNA methyltransferase [Shigella sonnei Ss046] gi|194434185|ref|ZP_03066453.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae 1012] gi|256025322|ref|ZP_05439187.1| putative RNA methyltransferase [Escherichia sp. 4_1_40B] gi|301646924|ref|ZP_07246769.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 146-1] gi|307136603|ref|ZP_07495959.1| putative RNA methyltransferase [Escherichia coli H736] gi|331640448|ref|ZP_08341596.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H736] gi|73858314|gb|AAZ91021.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|194417622|gb|EDX33723.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae 1012] gi|301074912|gb|EFK89718.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 146-1] gi|323166212|gb|EFZ51990.1| hypothetical protein SS53G_3575 [Shigella sonnei 53G] gi|331040194|gb|EGI12401.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H736] gi|332097902|gb|EGJ02875.1| hypothetical protein SD15574_0046 [Shigella dysenteriae 155-74] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|26111729|gb|AAN83910.1|AE016772_88 Hypothetical tRNA/rRNA methyltransferase lasT [Escherichia coli CFT073] Length = 235 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 111 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 163 >gi|15834615|ref|NP_313388.1| RNA methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|168750958|ref|ZP_02775980.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4113] gi|168756823|ref|ZP_02781830.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4401] gi|168762757|ref|ZP_02787764.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4501] gi|168766687|ref|ZP_02791694.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4486] gi|168776617|ref|ZP_02801624.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4196] gi|168781695|ref|ZP_02806702.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4076] gi|168785048|ref|ZP_02810055.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC869] gi|168797978|ref|ZP_02822985.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC508] gi|195937674|ref|ZP_03083056.1| putative RNA methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208807856|ref|ZP_03250193.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4206] gi|208812204|ref|ZP_03253533.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4045] gi|208820258|ref|ZP_03260578.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4042] gi|209397370|ref|YP_002273923.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4115] gi|217325430|ref|ZP_03441514.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. TW14588] gi|254796399|ref|YP_003081236.1| putative RNA methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|261226760|ref|ZP_05941041.1| RNA methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261255164|ref|ZP_05947697.1| RNA methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|13364839|dbj|BAB38784.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187768001|gb|EDU31845.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4196] gi|188014896|gb|EDU53018.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4113] gi|189000755|gb|EDU69741.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4076] gi|189356035|gb|EDU74454.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4401] gi|189364086|gb|EDU82505.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4486] gi|189366929|gb|EDU85345.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4501] gi|189375093|gb|EDU93509.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC869] gi|189379506|gb|EDU97922.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC508] gi|208727657|gb|EDZ77258.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4206] gi|208733481|gb|EDZ82168.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4045] gi|208740381|gb|EDZ88063.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4042] gi|209158770|gb|ACI36203.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4115] gi|209748730|gb|ACI72672.1| hypothetical protein ECs5361 [Escherichia coli] gi|209748732|gb|ACI72673.1| hypothetical protein ECs5361 [Escherichia coli] gi|209748736|gb|ACI72675.1| hypothetical protein ECs5361 [Escherichia coli] gi|217321651|gb|EEC30075.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. TW14588] gi|254595799|gb|ACT75160.1| RNA methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|320190480|gb|EFW65130.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC1212] gi|326345283|gb|EGD69026.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. 1125] gi|326346863|gb|EGD70597.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. 1044] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|16132220|ref|NP_418820.1| predicted rRNA methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|89111111|ref|AP_004891.1| predicted rRNA methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|170083789|ref|YP_001733109.1| rRNA methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|218703151|ref|YP_002410780.1| putative RNA methyltransferase [Escherichia coli IAI39] gi|238903490|ref|YP_002929286.1| putative rRNA methyltransferase [Escherichia coli BW2952] gi|301330240|ref|ZP_07222898.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 78-1] gi|312970097|ref|ZP_07784279.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli 1827-70] gi|729917|sp|P37005|LAST_ECOLI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase LasT gi|537243|gb|AAA97299.1| ORF_o228b [Escherichia coli str. K-12 substr. MG1655] gi|1790865|gb|AAC77356.1| predicted rRNA methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|85677142|dbj|BAE78392.1| predicted rRNA methyltransferase [Escherichia coli str. K12 substr. W3110] gi|169891624|gb|ACB05331.1| predicted rRNA methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|218373137|emb|CAR21031.1| rRNA methyltransferase [Escherichia coli IAI39] gi|238863085|gb|ACR65083.1| predicted rRNA methyltransferase [Escherichia coli BW2952] gi|260450786|gb|ACX41208.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli DH1] gi|300843746|gb|EFK71506.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 78-1] gi|310337595|gb|EFQ02706.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli 1827-70] gi|315138957|dbj|BAJ46116.1| putative RNA methyltransferase [Escherichia coli DH1] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|194439268|ref|ZP_03071347.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 101-1] gi|194421750|gb|EDX37758.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 101-1] gi|315616225|gb|EFU96844.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli 3431] gi|323970852|gb|EGB66104.1| RNA methyltransferase [Escherichia coli TA007] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|191173157|ref|ZP_03034689.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11] gi|218692792|ref|YP_002401004.1| putative RNA methyltransferase [Escherichia coli ED1a] gi|227885105|ref|ZP_04002910.1| RNA methyltransferase [Escherichia coli 83972] gi|229106359|ref|NP_757336.2| putative RNA methyltransferase [Escherichia coli CFT073] gi|300980881|ref|ZP_07175230.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 45-1] gi|300983987|ref|ZP_07176838.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 200-1] gi|301048375|ref|ZP_07195404.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 185-1] gi|190906542|gb|EDV66149.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11] gi|218430356|emb|CAR11226.1| rRNA methyltransferase [Escherichia coli ED1a] gi|227837934|gb|EEJ48400.1| RNA methyltransferase [Escherichia coli 83972] gi|300299792|gb|EFJ56177.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 185-1] gi|300306821|gb|EFJ61341.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 200-1] gi|300409123|gb|EFJ92661.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 45-1] gi|307556637|gb|ADN49412.1| RNA methyltransferase [Escherichia coli ABU 83972] gi|315293342|gb|EFU52694.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 153-1] gi|320195357|gb|EFW69985.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli WV_060327] gi|324012374|gb|EGB81593.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 60-1] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|157156588|ref|YP_001465924.1| putative RNA methyltransferase [Escherichia coli E24377A] gi|157163851|ref|YP_001461169.1| putative RNA methyltransferase [Escherichia coli HS] gi|170021638|ref|YP_001726592.1| putative RNA methyltransferase [Escherichia coli ATCC 8739] gi|188493074|ref|ZP_03000344.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 53638] gi|193070602|ref|ZP_03051540.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E110019] gi|254037414|ref|ZP_04871491.1| RNA methyltransferase [Escherichia sp. 1_1_43] gi|260858577|ref|YP_003232468.1| putative rRNA methyltransferase [Escherichia coli O26:H11 str. 11368] gi|260871125|ref|YP_003237527.1| putative rRNA methyltransferase [Escherichia coli O111:H- str. 11128] gi|300918110|ref|ZP_07134722.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 115-1] gi|300923539|ref|ZP_07139574.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 182-1] gi|157069531|gb|ABV08786.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli HS] gi|157078618|gb|ABV18326.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E24377A] gi|169756566|gb|ACA79265.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli ATCC 8739] gi|188488273|gb|EDU63376.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 53638] gi|192956085|gb|EDV86550.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E110019] gi|226840520|gb|EEH72522.1| RNA methyltransferase [Escherichia sp. 1_1_43] gi|257757226|dbj|BAI28728.1| predicted rRNA methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257767481|dbj|BAI38976.1| predicted rRNA methyltransferase [Escherichia coli O111:H- str. 11128] gi|284924581|emb|CBG37720.1| putative RNA methyltransferase [Escherichia coli 042] gi|300414694|gb|EFJ98004.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 115-1] gi|300420213|gb|EFK03524.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 182-1] gi|320200480|gb|EFW75066.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli EC4100B] gi|323157707|gb|EFZ43812.1| hypothetical protein ECEPECA14_0401 [Escherichia coli EPECa14] gi|323176309|gb|EFZ61901.1| hypothetical protein ECOK1180_5003 [Escherichia coli 1180] gi|323935195|gb|EGB31558.1| RNA methyltransferase [Escherichia coli E1520] gi|323945815|gb|EGB41861.1| RNA methyltransferase [Escherichia coli H120] gi|324019829|gb|EGB89048.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 117-3] gi|332346450|gb|AEE59784.1| tRNA/rRNA methyltransferase LasT [Escherichia coli UMNK88] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|193065649|ref|ZP_03046715.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22] gi|194429193|ref|ZP_03061722.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171] gi|209921870|ref|YP_002295954.1| putative RNA methyltransferase [Escherichia coli SE11] gi|218698239|ref|YP_002405906.1| putative RNA methyltransferase [Escherichia coli 55989] gi|256020154|ref|ZP_05434019.1| putative RNA methyltransferase [Shigella sp. D9] gi|260847293|ref|YP_003225071.1| putative rRNA methyltransferase [Escherichia coli O103:H2 str. 12009] gi|293476666|ref|ZP_06665074.1| tRNA/rRNA methyltransferase [Escherichia coli B088] gi|192926722|gb|EDV81350.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22] gi|194412808|gb|EDX29101.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171] gi|209915129|dbj|BAG80203.1| conserved hypothetical protein [Escherichia coli SE11] gi|218354971|emb|CAV02220.1| rRNA methyltransferase [Escherichia coli 55989] gi|257762440|dbj|BAI33937.1| predicted rRNA methyltransferase [Escherichia coli O103:H2 str. 12009] gi|291321119|gb|EFE60561.1| tRNA/rRNA methyltransferase [Escherichia coli B088] gi|323163224|gb|EFZ49056.1| hypothetical protein ECE128010_0585 [Escherichia coli E128010] gi|323181944|gb|EFZ67356.1| hypothetical protein ECOK1357_4815 [Escherichia coli 1357] gi|324118355|gb|EGC12249.1| RNA methyltransferase [Escherichia coli E1167] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|82546754|ref|YP_410701.1| RNA methyltransferase [Shigella boydii Sb227] gi|187733363|ref|YP_001883067.1| putative RNA methyltransferase [Shigella boydii CDC 3083-94] gi|81248165|gb|ABB68873.1| conserved hypothetical protein [Shigella boydii Sb227] gi|187430355|gb|ACD09629.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC 3083-94] gi|320176856|gb|EFW51884.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae CDC 74-1112] gi|320183575|gb|EFW58420.1| RNA methyltransferase, TrmH family, group 1 [Shigella flexneri CDC 796-83] gi|332090451|gb|EGI95549.1| hypothetical protein SB359474_4016 [Shigella boydii 3594-74] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|56480615|ref|NP_710140.2| putative RNA methyltransferase [Shigella flexneri 2a str. 301] gi|191167401|ref|ZP_03029216.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A] gi|218556938|ref|YP_002389852.1| putative RNA methyltransferase [Escherichia coli IAI1] gi|300824445|ref|ZP_07104558.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 119-7] gi|309795680|ref|ZP_07690096.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 145-7] gi|331666231|ref|ZP_08367112.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli TA271] gi|331680570|ref|ZP_08381229.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H591] gi|56384166|gb|AAN45847.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|190902541|gb|EDV62275.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A] gi|218363707|emb|CAR01367.1| rRNA methyltransferase [Escherichia coli IAI1] gi|281603740|gb|ADA76724.1| putative rRNA methylase [Shigella flexneri 2002017] gi|300523087|gb|EFK44156.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 119-7] gi|308120804|gb|EFO58066.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 145-7] gi|313646239|gb|EFS10701.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella flexneri 2a str. 2457T] gi|331066442|gb|EGI38319.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli TA271] gi|331072033|gb|EGI43369.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H591] gi|332749167|gb|EGJ79590.1| hypothetical protein SFK671_5214 [Shigella flexneri K-671] gi|332749663|gb|EGJ80079.1| hypothetical protein SF274771_5233 [Shigella flexneri 2747-71] gi|332768790|gb|EGJ98969.1| RNA methyltransferase, TrmH , group 1 family protein [Shigella flexneri 2930-71] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|302842287|ref|XP_002952687.1| hypothetical protein VOLCADRAFT_118107 [Volvox carteri f. nagariensis] gi|300262031|gb|EFJ46240.1| hypothetical protein VOLCADRAFT_118107 [Volvox carteri f. nagariensis] Length = 473 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 3/60 (5%) Query: 224 IKNDKIALILGAEGKGLRPKTQETAT---SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + AL+ G E GL + + ++N+S+A AV L + Sbjct: 275 HRPHATALVFGREESGLSEAELRLCRCPGHACAIPTGRLQPSMNLSHAVAVVLGEIFSRR 334 >gi|296114999|ref|ZP_06833643.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769] gi|295978461|gb|EFG85195.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769] Length = 258 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 20/50 (40%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + L+ G E GL + A ++ + +LN++ A + Y Sbjct: 122 RTGLLFGPERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWW 171 >gi|254470267|ref|ZP_05083671.1| RNA methyltransferase, TrmH family, group 1 [Pseudovibrio sp. JE062] gi|211960578|gb|EEA95774.1| RNA methyltransferase, TrmH family, group 1 [Pseudovibrio sp. JE062] Length = 256 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 18/51 (35%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + G E GL A + L + +LN++ A V Y + Sbjct: 119 PSGYLFGRERWGLNNDEVALANKIVTLPVDPTYASLNIAQAVLVCAYEWRR 169 >gi|162147983|ref|YP_001602444.1| cysteinyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5] gi|161786560|emb|CAP56142.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5] Length = 711 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 20/50 (40%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + L+ G E GL + A ++ + +LN++ A + Y Sbjct: 575 RTGLLFGPERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWW 624 >gi|313771681|gb|EFS37647.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL074PA1] gi|313810504|gb|EFS48218.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL083PA1] gi|313818066|gb|EFS55780.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL046PA2] gi|313820925|gb|EFS58639.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL036PA1] gi|313827061|gb|EFS64775.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL063PA1] gi|313831545|gb|EFS69259.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL007PA1] gi|313832531|gb|EFS70245.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL056PA1] gi|313839272|gb|EFS76986.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL086PA1] gi|314926952|gb|EFS90783.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL036PA3] gi|314961772|gb|EFT05873.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL002PA2] gi|314964756|gb|EFT08856.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL082PA1] gi|314974896|gb|EFT18991.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL053PA1] gi|314979684|gb|EFT23778.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL072PA2] gi|314984577|gb|EFT28669.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL005PA1] gi|315082261|gb|EFT54237.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL078PA1] gi|327326511|gb|EGE68299.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL096PA3] gi|327332778|gb|EGE74510.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL096PA2] gi|327335170|gb|EGE76880.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL097PA1] gi|327448399|gb|EGE95053.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL043PA2] gi|327448473|gb|EGE95127.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL043PA1] gi|328757294|gb|EGF70910.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL020PA1] gi|328762053|gb|EGF75558.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL099PA1] Length = 164 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 17/42 (40%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L+ G+EG GL + + + + G +++N Sbjct: 100 VQLPQDCCLVFGSEGPGLTDEVVKGCEQLVAITQYGSTRSMN 141 >gi|258543648|ref|YP_003189081.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-01] gi|256634726|dbj|BAI00702.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-01] gi|256637782|dbj|BAI03751.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-03] gi|256640836|dbj|BAI06798.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-07] gi|256643891|dbj|BAI09846.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-22] gi|256646946|dbj|BAI12894.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-26] gi|256649999|dbj|BAI15940.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-32] gi|256652989|dbj|BAI18923.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656043|dbj|BAI21970.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-12] Length = 256 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 21/50 (42%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+ L+ G E GL + A ++ + +LN++ A + Y Sbjct: 122 KVGLMFGPERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWW 171 >gi|326626277|gb|EGE32622.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 203 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 79 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 131 >gi|313793789|gb|EFS41820.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL110PA1] gi|313803102|gb|EFS44310.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL110PA2] gi|313808316|gb|EFS46787.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL087PA2] gi|313824005|gb|EFS61719.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL036PA2] gi|314978011|gb|EFT22105.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL045PA1] gi|315079276|gb|EFT51279.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL053PA2] gi|315083769|gb|EFT55745.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL027PA2] gi|315087409|gb|EFT59385.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL002PA3] gi|315089826|gb|EFT61802.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL072PA1] gi|315095489|gb|EFT67465.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL038PA1] gi|327449669|gb|EGE96323.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL013PA2] gi|327456121|gb|EGF02776.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL092PA1] gi|332676410|gb|AEE73226.1| rRNA methylase SpoU family [Propionibacterium acnes 266] Length = 196 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 5/159 (3%) Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 + V T + LDA R+ L + + + NIG+++R+A AF+ + Sbjct: 20 DRRNVIDRYRYWTMEAIVADLDAQRSP-LHVAIQNWEHDFNIGSVVRTANAFNVAAVHIL 78 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 R + + + H + + G + S + Sbjct: 79 GRRRWNRRGAMVTDRYLHVYHHSDVPSFLHWLDEHGVTPVGVDNLPGSVPLET----VQL 134 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L+ G+EG GL + + + + G +++N Sbjct: 135 PQDCCLVFGSEGPGLTDEVVKGCEQLVAITQYGSTRSMN 173 >gi|289826152|ref|ZP_06545264.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 234 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156 >gi|213417006|ref|ZP_03350150.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 234 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156 >gi|205355311|ref|YP_002229112.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859721|ref|YP_002246372.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205275092|emb|CAR40184.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206711524|emb|CAR35909.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326630478|gb|EGE36821.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156 >gi|194736168|ref|YP_002117509.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194711670|gb|ACF90891.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] Length = 203 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 79 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 131 >gi|194443042|ref|YP_002043840.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401705|gb|ACF61927.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156 >gi|194450554|ref|YP_002048619.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408858|gb|ACF69077.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156 >gi|168244498|ref|ZP_02669430.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205336649|gb|EDZ23413.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156 >gi|204927155|ref|ZP_03218357.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323820|gb|EDZ09015.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156 >gi|168230251|ref|ZP_02655309.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471963|ref|ZP_03077947.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458327|gb|EDX47166.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335164|gb|EDZ21928.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156 >gi|198244887|ref|YP_002218469.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939403|gb|ACH76736.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156 >gi|167552173|ref|ZP_02345926.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323136|gb|EDZ10975.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156 >gi|167989847|ref|ZP_02570947.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234736|ref|ZP_02659794.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168262343|ref|ZP_02684316.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464476|ref|ZP_02698379.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822143|ref|ZP_02834143.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197262963|ref|ZP_03163037.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200386516|ref|ZP_03213128.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|195632601|gb|EDX51055.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197241218|gb|EDY23838.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197292006|gb|EDY31356.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199603614|gb|EDZ02159.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205331570|gb|EDZ18334.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205341380|gb|EDZ28144.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348701|gb|EDZ35332.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261249679|emb|CBG27551.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996964|gb|ACY91849.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301161078|emb|CBW20616.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320089029|emb|CBY98785.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222432|gb|EFX47504.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132941|gb|ADX20371.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332991406|gb|AEF10389.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156 >gi|161617913|ref|YP_001586278.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161367277|gb|ABX71045.1| hypothetical protein SPAB_05780 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 203 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 79 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 131 >gi|161504866|ref|YP_001571978.1| putative RNA methyltransferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866213|gb|ABX22836.1| hypothetical protein SARI_02991 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156 >gi|62183015|ref|YP_219432.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224586415|ref|YP_002640214.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62130648|gb|AAX68351.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224470943|gb|ACN48773.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322615759|gb|EFY12679.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620607|gb|EFY17467.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322621765|gb|EFY18615.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627490|gb|EFY24281.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630797|gb|EFY27561.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637984|gb|EFY34685.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642253|gb|EFY38861.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645972|gb|EFY42490.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651139|gb|EFY47524.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656604|gb|EFY52892.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658737|gb|EFY54994.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661820|gb|EFY58036.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666433|gb|EFY62611.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672409|gb|EFY68521.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676281|gb|EFY72352.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679628|gb|EFY75673.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684338|gb|EFY80342.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322717522|gb|EFZ09093.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323191821|gb|EFZ77070.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198910|gb|EFZ84008.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200976|gb|EFZ86045.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209373|gb|EFZ94306.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212939|gb|EFZ97741.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216682|gb|EGA01407.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219820|gb|EGA04299.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226115|gb|EGA10332.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228768|gb|EGA12897.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236620|gb|EGA20696.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239879|gb|EGA23926.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242073|gb|EGA26102.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247486|gb|EGA31441.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250588|gb|EGA34470.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259317|gb|EGA42959.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263805|gb|EGA47326.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265600|gb|EGA49096.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270045|gb|EGA53493.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156 >gi|56416369|ref|YP_153444.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197365290|ref|YP_002144927.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56130626|gb|AAV80132.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096767|emb|CAR62391.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156 >gi|16767841|ref|NP_463456.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16423167|gb|AAL23415.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|312915692|dbj|BAJ39666.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156 >gi|16763388|ref|NP_459005.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144866|ref|NP_808208.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163203|ref|ZP_03348913.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427599|ref|ZP_03360349.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213620574|ref|ZP_03373357.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649674|ref|ZP_03379727.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865406|ref|ZP_03387525.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289806550|ref|ZP_06537179.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|25304298|pir||AH1076 probable RNA methyltransferase lasT [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505697|emb|CAD03431.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29140505|gb|AAO72068.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 228 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156 >gi|261330743|emb|CBH13728.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 373 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Query: 231 LILGAEGKGLRPKTQETA--TSMAHLHMPG-IIKALNVSNAAAVALYITQ 277 LILG+E KGLR E + + +P +++LNVS A ++ ++ + Sbjct: 297 LILGSEAKGLRDLAGEWSVPRKFVSVPLPNSTVESLNVSVAGSILIHAFR 346 >gi|72393371|ref|XP_847486.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62359584|gb|AAX80017.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70803516|gb|AAZ13420.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 373 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Query: 231 LILGAEGKGLRPKTQETA--TSMAHLHMPG-IIKALNVSNAAAVALYITQ 277 LILG+E KGLR E + + +P +++LNVS A ++ ++ + Sbjct: 297 LILGSEAKGLRDLAGEWSVPRKFVSVPLPNSTVESLNVSVAGSILIHAFR 346 >gi|149184437|ref|ZP_01862755.1| rRNA methylase [Erythrobacter sp. SD-21] gi|148831757|gb|EDL50190.1| rRNA methylase [Erythrobacter sp. SD-21] Length = 243 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + A++ G E GL + A ++ + + +LN++ A + Y H Sbjct: 105 MAQADGRSAILFGPERSGLETEDVALARAILTVPINPEFGSLNLAQAVILCAYEWSKH 162 >gi|171463671|ref|YP_001797784.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193209|gb|ACB44170.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 250 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+AL+ G E GL + T L +LN++ A + Y + Sbjct: 114 QGKVALLFGPERTGLDNEHLALCTHRVWLDANPNYPSLNLAQALMICAYTLR 165 >gi|163784272|ref|ZP_02179189.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1] gi|159880461|gb|EDP74048.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1] Length = 98 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 32/81 (39%), Gaps = 1/81 (1%) Query: 45 QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104 + E ++G + V A+ + L+A + + + ++ VP + ++++ Sbjct: 2 ENEKFVIWGRNPVVEAIKSGRSLEKILIAHDSHIPKQIIKLAEEKKIKIQKVPRKKVEEL 61 Query: 105 VGKEAVHQGLALETAPLLSPT 125 G + G+ +P+ Sbjct: 62 AGTKKTQ-GIVALVSPISYWD 81 >gi|299533288|ref|ZP_07046672.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44] gi|298718818|gb|EFI59791.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44] Length = 266 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 17/55 (30%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E G+ + +LN+ +A V Y + Sbjct: 128 ACNQKGVAFLFGCERFGMSNDDVYRCDVALSIPSNPQFGSLNLGSAIQVVAYDWR 182 >gi|264679621|ref|YP_003279528.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2] gi|262210134|gb|ACY34232.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2] Length = 267 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 17/55 (30%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E G+ + +LN+ +A V Y + Sbjct: 129 ACNQKGVAFLFGCERFGMSNDDVYRCDVALSIPSNPQFGSLNLGSAIQVVAYDWR 183 >gi|221065807|ref|ZP_03541912.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1] gi|220710830|gb|EED66198.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1] Length = 266 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 17/55 (30%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A + G E G+ + +LN+ +A V Y + Sbjct: 128 VCNQKGVAFLFGCERFGMSNDDVYRCDVALSIPSNPQFGSLNLGSAIQVVAYDWR 182 >gi|91789152|ref|YP_550104.1| RNA methyltransferase TrmH [Polaromonas sp. JS666] gi|91698377|gb|ABE45206.1| RNA methyltransferase TrmH, group 1 [Polaromonas sp. JS666] Length = 268 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 1/54 (1%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 D +A + G+E G++ + +LN+ A + Y Sbjct: 117 PDSVAFLFGSERFGMQNDDVYRCHVALSIPTDPKFGSLNLGAAVQLIAYD-WRQ 169 >gi|20089567|ref|NP_615642.1| SpoU rRNA methylase [Methanosarcina acetivorans C2A] gi|19914482|gb|AAM04122.1| SpoU rRNA methylase [Methanosarcina acetivorans C2A] Length = 255 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + IA++ G E G ++ + + I +N+S+A ++ LY Sbjct: 110 YSGTIAVLFGREDNGFNNDELKSFDMLITVPTSEIYPIMNLSHAVSIVLYEL 161 >gi|253690031|ref|YP_003019221.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756609|gb|ACT14685.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 228 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 20/55 (36%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + E A + + M +LN+ A V Y Sbjct: 102 VQWMASAALVFGREDVGLTNEELELADVLTGVPMKADYPSLNLGQAVMVYCYQLA 156 >gi|330993326|ref|ZP_08317261.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1] gi|329759356|gb|EGG75865.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1] Length = 266 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 21/50 (42%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+ L+ G E GL + A ++ + +LN++ A + Y Sbjct: 122 KVGLMFGPERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWW 171 >gi|119774888|ref|YP_927628.1| putative RNA methyltransferase [Shewanella amazonensis SB2B] gi|119767388|gb|ABL99958.1| putative RNA methyltransferase [Shewanella amazonensis SB2B] Length = 225 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +AL+ G E GL + +++ + G +LN+ A V Y Sbjct: 105 MALVFGRESSGLSNQELSQCDLFSYVPLAGDYPSLNLGQAVMVYTYAL 152 >gi|259416114|ref|ZP_05740034.1| RNA methyltransferase TrmH, group 1 [Silicibacter sp. TrichCH4B] gi|259347553|gb|EEW59330.1| RNA methyltransferase TrmH, group 1 [Silicibacter sp. TrichCH4B] Length = 249 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 23/53 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+A++ G E GL A ++ + + +LN++ + Y + Sbjct: 112 EKVAVLFGPERAGLENDDIAKANAIITVPVNPEFASLNLAQCVLLTAYEWRRQ 164 >gi|23465003|ref|NP_695606.1| hypothetical protein BL0405 [Bifidobacterium longum NCC2705] gi|189440070|ref|YP_001955151.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|239622608|ref|ZP_04665639.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133408|ref|YP_004000747.1| spou3 [Bifidobacterium longum subsp. longum BBMN68] gi|322690420|ref|YP_004219990.1| hypothetical protein BLLJ_0228 [Bifidobacterium longum subsp. longum JCM 1217] gi|23325605|gb|AAN24242.1| narrowly conserved hypothetical protein with possible methylase domain [Bifidobacterium longum NCC2705] gi|189428505|gb|ACD98653.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|239514605|gb|EEQ54472.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311772635|gb|ADQ02123.1| SpoU3 [Bifidobacterium longum subsp. longum BBMN68] gi|320455276|dbj|BAJ65898.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] Length = 282 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 P+E + L+ GAEG GL K A + ++ G ++++N Sbjct: 216 PMEAYAFPKRCLLLFGAEGPGLSEKALALADDVVYISQFGSVRSIN 261 >gi|99081177|ref|YP_613331.1| RNA methyltransferase TrmH, group 1 [Ruegeria sp. TM1040] gi|99037457|gb|ABF64069.1| RNA methyltransferase TrmH group 1 [Ruegeria sp. TM1040] Length = 249 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 23/53 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+A++ G E GL A ++ + + +LN++ + Y + Sbjct: 112 EKVAVLFGPERAGLENDDIAKANAIITVPVNPEFASLNLAQCVLLTAYEWRRQ 164 >gi|329113815|ref|ZP_08242586.1| Putative tRNA/rRNA methyltransferase [Acetobacter pomorum DM001] gi|326696825|gb|EGE48495.1| Putative tRNA/rRNA methyltransferase [Acetobacter pomorum DM001] Length = 256 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 21/50 (42%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+ L+ G E GL + A ++ + +LN++ A + Y Sbjct: 122 KVGLMFGPERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWW 171 >gi|26553462|ref|NP_757396.1| rRNA methylase [Mycoplasma penetrans HF-2] gi|26453468|dbj|BAC43800.1| rRNA methylase [Mycoplasma penetrans HF-2] Length = 161 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 7/150 (4%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I R+ V F+ + + ++ +H+ Sbjct: 1 MLNIVLFQPEIPENTGNISRTCVGFNATLHMIRPFGFILNDKRMKRAGLDYWDHLKRKEY 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQE------IKNDKIALILGAEGKGLRPKTQE 246 + +D + + L + K+++I + G E KGL + E Sbjct: 61 DDWSDFESQNLVNKNSKVFLITKFADKSISNLTKDELTKDEEIFFVFGRETKGLTSEIME 120 Query: 247 -TATSMAHLHMPGIIKALNVSNAAAVALYI 275 + M I++ N+SN+ A+ + Sbjct: 121 KYKKFQLKIEMNSNIRSFNLSNSVAIVAFH 150 >gi|254456096|ref|ZP_05069525.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. HTCC7211] gi|207083098|gb|EDZ60524.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. HTCC7211] Length = 237 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 20/50 (40%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 KIA + G+E GL A + K+LN+S++ + Sbjct: 101 IDFTKKIAFLFGSEASGLSNNEVSYANYTLQIPTNPDFKSLNLSHSLIII 150 >gi|241763475|ref|ZP_04761528.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax delafieldii 2AN] gi|241367316|gb|EER61647.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax delafieldii 2AN] Length = 283 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 1/49 (2%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + G+E G+ + + +LN+ A V Y Sbjct: 153 FLFGSERFGMANEDVYRCHVALSIPTNPRFGSLNLGAAIQVVAYE-WRQ 200 >gi|163801509|ref|ZP_02195408.1| rRNA methylase, putative [Vibrio sp. AND4] gi|159174998|gb|EDP59798.1| rRNA methylase, putative [Vibrio sp. AND4] Length = 172 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + I G E L + + A + ++ G +N++ V LY Sbjct: 92 FTHPENAVYIFGPEDGSLPQEVVDKADHVVYIPTNG---CMNLAATVNVVLYDR 142 >gi|227545717|ref|ZP_03975766.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|317482756|ref|ZP_07941768.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA] gi|322688400|ref|YP_004208134.1| hypothetical protein BLIF_0209 [Bifidobacterium longum subsp. infantis 157F] gi|227213833|gb|EEI81672.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|316915791|gb|EFV37201.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA] gi|320459736|dbj|BAJ70356.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 282 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 P+E + L+ GAEG GL K A + ++ G ++++N Sbjct: 216 PMEAYAFPKRCLLLFGAEGPGLSEKALALADDVVYISQFGSVRSIN 261 >gi|325282500|ref|YP_004255041.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus proteolyticus MRP] gi|324314309|gb|ADY25424.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus proteolyticus MRP] Length = 266 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 1/49 (2%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 AL+ G E GL E + + +LN++ A + Y Sbjct: 120 ALVFGPEETGLLNADLEQCQATVRIPTADYA-SLNLAQAVLLVTYEFLQ 167 >gi|271502114|ref|YP_003335140.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586] gi|270345669|gb|ACZ78434.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii Ech586] Length = 233 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 23/72 (31%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + E++ AL+ G E GL + A + + M +LN+ Sbjct: 85 FHYYCEPAQLLAVLQEKQQWISSAALVFGREDSGLTNEELALADILTGVPMAADYPSLNL 144 Query: 266 SNAAAVALYITQ 277 A V Y Sbjct: 145 GQAVMVYCYQLA 156 >gi|313763818|gb|EFS35182.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL013PA1] gi|314924475|gb|EFS88306.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL001PA1] gi|314932367|gb|EFS96198.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL067PA1] gi|314956676|gb|EFT00928.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL027PA1] gi|314959587|gb|EFT03689.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL002PA1] gi|314967313|gb|EFT11412.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL082PA2] gi|314981716|gb|EFT25809.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL110PA3] gi|315092480|gb|EFT64456.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL110PA4] gi|315094724|gb|EFT66700.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL060PA1] gi|315100138|gb|EFT72114.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL059PA2] gi|315102460|gb|EFT74436.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL046PA1] gi|315102886|gb|EFT74862.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL050PA2] gi|315107804|gb|EFT79780.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL030PA1] gi|327328572|gb|EGE70332.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL103PA1] gi|327455784|gb|EGF02439.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL087PA3] gi|327457929|gb|EGF04584.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL083PA2] gi|328757099|gb|EGF70715.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL087PA1] gi|328757477|gb|EGF71093.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL025PA2] Length = 164 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 17/42 (40%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L+ G+EG GL + + + + G +++N Sbjct: 100 VQLPQDCCLVFGSEGPGLTDEVVKGCEQLVAITQYGSTRSMN 141 >gi|50843459|ref|YP_056686.1| rRNA methylase (SpoU family protein) [Propionibacterium acnes KPA171202] gi|282854793|ref|ZP_06264127.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139] gi|50841061|gb|AAT83728.1| rRNA methylase (SpoU family protein) [Propionibacterium acnes KPA171202] gi|282581939|gb|EFB87322.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139] gi|313813862|gb|EFS51576.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL025PA1] gi|313817019|gb|EFS54733.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL059PA1] gi|313829825|gb|EFS67539.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL063PA2] gi|314916587|gb|EFS80418.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL005PA4] gi|314968739|gb|EFT12837.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL037PA1] gi|315109623|gb|EFT81599.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL030PA2] Length = 196 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 5/159 (3%) Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 + V T + LDA R+ L + + + NIG+++R+A AF+ + Sbjct: 20 DRRNVIDRYRYWTMEAIVADLDAQRSR-LHVAIQNWEHDFNIGSVVRTANAFNVAAVHIL 78 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 R + + + H + + G + S + Sbjct: 79 GRRRWNRRGAMVTDRYLHVYHHSDVPSFLHWLDEHGVTPVGVDNLPGSVPLET----VQL 134 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L+ G+EG GL + + + + G +++N Sbjct: 135 PQDCCLVFGSEGPGLTDEVVKGCEQLVAITQYGSTRSMN 173 >gi|306840340|ref|ZP_07473111.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO2] gi|306289687|gb|EFM60879.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO2] Length = 253 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K ++ G E GL + A + + +LN++ A + Y Sbjct: 96 EKTGILFGRERFGLSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMK 147 >gi|306844095|ref|ZP_07476689.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO1] gi|306275538|gb|EFM57270.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO1] Length = 276 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K ++ G E GL + A + + +LN++ A + Y Sbjct: 119 EKTGILFGRERFGLSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|254719254|ref|ZP_05181065.1| RNA methyltransferase [Brucella sp. 83/13] gi|256369620|ref|YP_003107130.1| RNA methyltransferase, TrmH family, group 1 [Brucella microti CCM 4915] gi|265984253|ref|ZP_06096988.1| RNA methyltransferase [Brucella sp. 83/13] gi|306838004|ref|ZP_07470862.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. NF 2653] gi|255999782|gb|ACU48181.1| RNA methyltransferase, TrmH family, group 1 [Brucella microti CCM 4915] gi|264662845|gb|EEZ33106.1| RNA methyltransferase [Brucella sp. 83/13] gi|306406928|gb|EFM63149.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. NF 2653] Length = 276 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K ++ G E GL + A + + +LN++ A + Y Sbjct: 119 EKTGILFGRERFGLSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|239832084|ref|ZP_04680413.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum intermedium LMG 3301] gi|239824351|gb|EEQ95919.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum intermedium LMG 3301] Length = 302 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K ++ G E GL + A + + +LN++ A + Y Sbjct: 140 EKTGILFGRERFGLSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMK 191 >gi|153009325|ref|YP_001370540.1| RNA methyltransferase [Ochrobactrum anthropi ATCC 49188] gi|151561213|gb|ABS14711.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum anthropi ATCC 49188] Length = 281 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K ++ G E GL + A + + +LN++ A + Y Sbjct: 119 EKTGILFGRERFGLSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|217979899|ref|YP_002364046.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2] gi|217505275|gb|ACK52684.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2] Length = 169 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 46/136 (33%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 L + L + P N G ILR I P ++ L+H+ Sbjct: 4 FEPVDLTVALYQPDIPQNAGTILRMCACLGLRAAIIEPAGFPVSDRHFRRAGMDYLDHVA 63 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 R + + G + + LS+ + P L+LG E G + +A Sbjct: 64 IERHVSFAAFDAARRAEGARLVLLSTKAALPYADFAFRAGDILLLGRESAGAPDEVHRSA 123 Query: 249 TSMAHLHMPGIIKALN 264 + + + +++LN Sbjct: 124 DARIIIPLADGMRSLN 139 >gi|254368751|ref|ZP_04984764.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|157121672|gb|EDO65842.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica FSC022] Length = 218 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 10/213 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99 +YG+H V + + K + NA +++ + V + + Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AV + L + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 L D +A++ GAE G+R +T+ Sbjct: 184 LYSMNLVDSVAIVAGAEDSGMRQRTKAIVNPRV 216 >gi|83858779|ref|ZP_00952301.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii HTCC2633] gi|83853602|gb|EAP91454.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii HTCC2633] Length = 247 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 23/56 (41%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ ++ GAE GL + ++ L + +LN++ A V + + Sbjct: 105 HVEAGQRVGVLFGAEKSGLPNAAITLSNAIITLPVDRSFSSLNLAMAVGVFAHEWR 160 >gi|238882262|gb|EEQ45900.1| hypothetical protein CAWG_04239 [Candida albicans WO-1] Length = 470 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVAL 273 K + LI+G+EG G+R + + + + I+ +LN A V L Sbjct: 413 KKTPVMLIIGSEGSGVRTNMKIRSDYLVGIPKIRRNDNIVDSLNAGVATGVIL 465 Score = 40.2 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 16/119 (13%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN----------------LFLYGV 54 KI K + R + + ++ + +++G Sbjct: 101 KIAHEKSLQEKAYQERERARELAREAKGNGKNFKSGGSSNYDTGVMVDRNDTIFDYVFGT 160 Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 H V A L R+I L N + A + K + + I+ K VH G Sbjct: 161 HPVKAVLMAGKRRILDLYTFNNEDPDIVKLAMEKYGIVPKRLKDKNALNILCKNGVHNG 219 >gi|163857771|ref|YP_001632069.1| methyltransferase [Bordetella petrii DSM 12804] gi|163261499|emb|CAP43801.1| probable methyltransferase [Bordetella petrii] Length = 255 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 A++LG E GL + H+ +LNV+ A +A + + Sbjct: 119 AVVLGTERAGLTNAQIALCQRICHIPANPEYSSLNVAQALQLAAWELR 166 >gi|238910757|ref|ZP_04654594.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 228 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|197249650|ref|YP_002149541.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197213353|gb|ACH50750.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 228 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|306440754|pdb|3ONP|A Chain A, Crystal Structure Of TrnaRRNA METHYLTRANSFERASE SPOU FROM RHODOBACTER Sphaeroides Length = 249 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 22/53 (41%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ ++ G E GL + A ++ + + +LN++ + Y + Sbjct: 109 RRVGILFGPERTGLENEDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQ 161 >gi|77465011|ref|YP_354514.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacter sphaeroides 2.4.1] gi|126464273|ref|YP_001045386.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17029] gi|332560613|ref|ZP_08414931.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N] gi|77389429|gb|ABA80613.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacter sphaeroides 2.4.1] gi|126106084|gb|ABN78614.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sphaeroides ATCC 17029] gi|332274411|gb|EGJ19727.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N] Length = 243 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 22/53 (41%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ ++ G E GL + A ++ + + +LN++ + Y + Sbjct: 109 RRVGILFGPERTGLENEDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQ 161 >gi|118602504|ref|YP_903719.1| RNA methyltransferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567443|gb|ABL02248.1| RNA methyltransferase, TrmH family, group 1 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 243 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 32/75 (42%) Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 ++ + Q + + S+ ++ K+A+I G E GL + + + + Sbjct: 85 RQRNIKWRQMDVVGACSEIQKTIMAESQKVAVIFGTERTGLTNEELDLCQILMTIPGNSH 144 Query: 260 IKALNVSNAAAVALY 274 +LNV++A V Y Sbjct: 145 YFSLNVASAIQVFAY 159 >gi|297621668|ref|YP_003709805.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] gi|297376969|gb|ADI38799.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] Length = 239 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 19/45 (42%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267 L +G E GL + A ++ + + G +LNV+N Sbjct: 180 YTFPSSGCLAVGNEEYGLSDEVLSQADAVVEIPLYGKKNSLNVAN 224 >gi|223041927|ref|ZP_03612112.1| predicted rRNA methyltransferase [Actinobacillus minor 202] gi|223017281|gb|EEF15708.1| predicted rRNA methyltransferase [Actinobacillus minor 202] Length = 334 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 85/241 (35%), Gaps = 13/241 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97 ++ ++ +YG ++ A I +L AT +L H V Sbjct: 91 KKNRAEEMR--VYGENSCLAVFQQRPESIVRLWATVEGAKKLGDMLSYLAEHKKAYHVVS 148 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRS 153 + ++K+ G E H + L +L+ R L++LD+VN+ N+G ++R+ Sbjct: 149 REEMEKVTGTE-HHGDVCLLVKKSPVFSLEGYLQITRARDCLVLLDNVNNAQNVGGVIRT 207 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 + GIIT + SA + G Q ++ Sbjct: 208 CAFYGVKGIITESSDRLNSSAAARVAEGGLEFVHALETKHKQIALQQLRNAGYQIIHLTR 267 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-IKALNVSNAAAVA 272 L + +K+ +L +E + + + + L + +LNV+ A + Sbjct: 268 QKQVPTLTKIALAEKVVFVL-SEI--VSNEIEFSEDVTVQLSVANPLSSSLNVAVNAGIL 324 Query: 273 L 273 L Sbjct: 325 L 325 >gi|30065639|ref|NP_839810.1| putative RNA methyltransferase [Shigella flexneri 2a str. 2457T] gi|30043903|gb|AAP19622.1| hypothetical protein S4706 [Shigella flexneri 2a str. 2457T] Length = 228 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVKVYCYQLA 156 >gi|83592035|ref|YP_425787.1| RNA methyltransferase TrmH, group 1 [Rhodospirillum rubrum ATCC 11170] gi|83574949|gb|ABC21500.1| RNA methyltransferase TrmH, group 1 [Rhodospirillum rubrum ATCC 11170] Length = 279 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 22/52 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ A++ G E GL A ++ + + +LN++ A + Y Sbjct: 122 ERCAVMFGPERTGLSNDDVALADAIVEVPLNPAYCSLNLAQAVLLLGYEWYQ 173 >gi|197123484|ref|YP_002135435.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K] gi|196173333|gb|ACG74306.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K] Length = 237 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + A++ G E GL ++ + +LN++ AA V LY + Sbjct: 106 GRTAIVFGDERSGLTNDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRK 157 >gi|86159409|ref|YP_466194.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans 2CP-C] gi|85775920|gb|ABC82757.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans 2CP-C] Length = 236 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + A++ G E GL ++ + +LN++ AA V LY + Sbjct: 106 GRTAIVFGDERSGLTNDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRK 157 >gi|88797963|ref|ZP_01113550.1| rRNA methyltransferase, TrmH family protein [Reinekea sp. MED297] gi|88779160|gb|EAR10348.1| rRNA methyltransferase, TrmH family protein [Reinekea sp. MED297] Length = 239 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 19/50 (38%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +A++ G E GL + + ++ LN+S A + + Sbjct: 109 VAIVFGRERMGLSNEEIQQCHFQLNIATNPEYPVLNLSQAVQLVAWEVFK 158 >gi|303281969|ref|XP_003060276.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457747|gb|EEH55045.1| predicted protein [Micromonas pusilla CCMP1545] Length = 492 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 29/110 (26%), Gaps = 2/110 (1%) Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232 +++ H + S + PL+ + + Sbjct: 345 YKHKYEASDTTQSHKQLPLHKHDDWGDFAKSSPHGAVLVAIEMGGTPLQDFAHPPRAVYV 404 Query: 233 LGAEGKGLRPKTQETATSMAHLHM-PGIIKALNVSNAAAVALYITQ-NHF 280 LG+E GL E L G + NV+ A + +Y Sbjct: 405 LGSEDNGLNRPIVEACQCHVALPKWFGRSASYNVAMAGTLVMYDRMIKQL 454 >gi|255085818|ref|XP_002505340.1| predicted protein [Micromonas sp. RCC299] gi|226520609|gb|ACO66598.1| predicted protein [Micromonas sp. RCC299] Length = 525 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 2/108 (1%) Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 +++ + +S PL+ + + +LG Sbjct: 402 FKYEASDTTQAYKQLPLFKYDEWGDFAKNSPHGAVWVAIEMGGVPLQDFVHPPRAVYVLG 461 Query: 235 AEGKGLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALYIT-QNHF 280 +E GL E L G + NV+ A + +Y Q Sbjct: 462 SEDNGLNRPIVEACQCHVALPKWIGRSASYNVAMAGTLVMYDRMQKQL 509 >gi|314918941|gb|EFS82772.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL050PA1] gi|314920962|gb|EFS84793.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL050PA3] Length = 164 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 17/42 (40%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L+ G+EG GL + + + + G +++N Sbjct: 100 VQLPQDCCLVFGSEGPGLTDEVVKGCEQLVAITQYGSTRSMN 141 >gi|218288919|ref|ZP_03493170.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius LAA1] gi|218241008|gb|EED08185.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius LAA1] Length = 467 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 35/239 (14%), Positives = 76/239 (31%), Gaps = 25/239 (10%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I ++++ + + + R + + G V+ Sbjct: 1 MVYIESAHNDRVRAW-------------------ARLKTRRGRERTGLFLVEGERLVAEL 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 LN+P R L + + + PQ + E Sbjct: 42 LNSPLRLEALLWNVASDEPPEALWQHPKADGRRYELSPQAFAAVADTETPQG-----LMA 96 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + S ++ ++VLD + DP N+G ++RSA AF I+ + + + +++ Sbjct: 97 VASIPQTEPQHGDRVLVLDAIQDPGNVGTLVRSAEAFGFGEIVFGTGTADPYAPKVVRAS 156 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGK 238 G L + I + ++ + E ++A+++G EG Sbjct: 157 MGGLFRVNAIAGDAEAYLRAWRDRHPDGLVVATAADARERCDEAPMAGEVAMVIGNEGP 215 >gi|260596420|ref|YP_003208991.1| putative RNA methyltransferase [Cronobacter turicensis z3032] gi|260215597|emb|CBA27837.1| Uncharacterized tRNA/rRNA methyltransferase lasT [Cronobacter turicensis z3032] Length = 239 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 19/48 (39%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 119 TALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL 166 >gi|307132664|ref|YP_003884680.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii 3937] gi|306530193|gb|ADN00124.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii 3937] Length = 233 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 19/54 (35%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 103 QWVSSAALVFGREDSGLTNEELALADILTGVPMAADYPSLNLGQAVMVYCYQLA 156 >gi|310288141|ref|YP_003939400.1| rRNA methyltransferase SpoU family [Bifidobacterium bifidum S17] gi|309252078|gb|ADO53826.1| rRNA methyltransferase SpoU family [Bifidobacterium bifidum S17] Length = 294 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 25/46 (54%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 P+E ++ ++ GAEG GL K E A + ++ G ++++N Sbjct: 232 PMETYRFPERCLMLFGAEGPGLSNKALELADDVVYISQFGSVRSIN 277 >gi|311065013|ref|YP_003971739.1| 23S rRNA methyltransferase [Bifidobacterium bifidum PRL2010] gi|310867333|gb|ADP36702.1| 23S rRNA methyltransferase [Bifidobacterium bifidum PRL2010] Length = 294 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 25/46 (54%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 P+E ++ ++ GAEG GL K E A + ++ G ++++N Sbjct: 232 PMETYRFPERCLMLFGAEGPGLSNKALELADDVVYISQFGSVRSIN 277 >gi|326317886|ref|YP_004235558.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374722|gb|ADX46991.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 277 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 16/47 (34%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + G+E G+ + + +LN+ A V Y + Sbjct: 147 FLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGAAIQVIAYEWR 193 >gi|188582582|ref|YP_001926027.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium populi BJ001] gi|179346080|gb|ACB81492.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium populi BJ001] Length = 245 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 22/52 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +++ L+ G E GL A ++ + +LN++ A + Y + Sbjct: 108 ERVGLMFGRERVGLSNDEVSLADAIVTFPVTEEFPSLNLAQAVLLMGYEWRR 159 >gi|120610753|ref|YP_970431.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1] gi|120589217|gb|ABM32657.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1] Length = 277 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 16/47 (34%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + G+E G+ + + +LN+ A V Y + Sbjct: 147 FLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGAAIQVIAYEWR 193 >gi|224283598|ref|ZP_03646920.1| hypothetical protein BbifN4_07177 [Bifidobacterium bifidum NCIMB 41171] gi|313140749|ref|ZP_07802942.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313133259|gb|EFR50876.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 294 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 25/46 (54%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 P+E ++ ++ GAEG GL K E A + ++ G ++++N Sbjct: 232 PMETYRFPERCLMLFGAEGPGLSNKALELADDVVYISQFGSVRSIN 277 >gi|322420060|ref|YP_004199283.1| TrmH family RNA methyltransferase [Geobacter sp. M18] gi|320126447|gb|ADW14007.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. M18] Length = 245 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 19/51 (37%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++AL+ G E GL + + +LN+S A + Y Sbjct: 110 RLALVFGREDSGLTTDEVALCRWQSTIETADEFGSLNLSQAVLIFCYEFLK 160 >gi|253700177|ref|YP_003021366.1| RNA methyltransferase TrmH [Geobacter sp. M21] gi|251775027|gb|ACT17608.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. M21] Length = 245 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 19/51 (37%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++AL+ G E GL + + +LN+S A + Y Sbjct: 110 RLALVFGREDSGLTTDEVALCRWQSTIETADEFGSLNLSQAVLIFCYEFLK 160 >gi|213580553|ref|ZP_03362379.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 154 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 18/50 (36%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 AL+ G E GL A + + M +LN+ A V Y Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCY 153 >gi|169236111|ref|YP_001689311.1| hypothetical protein OE2923F [Halobacterium salinarum R1] gi|167727177|emb|CAP13963.1| conserved hypothetical protein [Halobacterium salinarum R1] Length = 241 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + + +N+ +A VALY + Sbjct: 110 PTALVFGRERVGLTNDELARIDEVGSIPASDDYPVMNLGQSATVALYELR 159 >gi|15790377|ref|NP_280201.1| hypothetical protein VNG1347C [Halobacterium sp. NRC-1] gi|10580859|gb|AAG19681.1| conserved hypothetical protein [Halobacterium sp. NRC-1] Length = 253 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + + +N+ +A VALY + Sbjct: 122 PTALVFGRERVGLTNDELARIDEVGSIPASDDYPVMNLGQSATVALYELR 171 >gi|218531400|ref|YP_002422216.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium chloromethanicum CM4] gi|218523703|gb|ACK84288.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium chloromethanicum CM4] Length = 245 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 22/52 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +++ L+ G E GL A ++ + +LN++ A + Y + Sbjct: 108 ERVGLMFGRERVGLSNDEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRR 159 >gi|300023629|ref|YP_003756240.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans ATCC 51888] gi|299525450|gb|ADJ23919.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans ATCC 51888] Length = 430 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 21/52 (40%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ ++ G E GL A ++ + + +LN++ A + Y Sbjct: 276 ERCGILFGRERNGLETGEVANADALIMIPVNSRFASLNLAQAVLLLGYEWMR 327 >gi|16272372|ref|NP_438585.1| rRNA methylase [Haemophilus influenzae Rd KW20] gi|260580513|ref|ZP_05848341.1| rRNA methylase [Haemophilus influenzae RdAW] gi|1175994|sp|P44703|Y424_HAEIN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase HI_0424 gi|1573396|gb|AAC22080.1| rRNA methylase, putative [Haemophilus influenzae Rd KW20] gi|260092855|gb|EEW76790.1| rRNA methylase [Haemophilus influenzae RdAW] Length = 351 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 92/241 (38%), Gaps = 13/241 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97 ++ ++ +YG + A I +L AT ++ + V Sbjct: 111 KKNRAEEMK--VYGENACLALFAERPESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 168 Query: 98 PQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRS 153 + + ++ G E H G+ L + T LD RN L++LD+VN+ NIG +LR+ Sbjct: 169 SEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRT 227 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 F I+ + +A + + GA + +Q S Sbjct: 228 CAYFGVKNIVADNVENLYSAASMRVAEGGAEYIRVLEADYIDSALMQLRKSGYQIIHVSH 287 Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVA 272 + PL++ +K+ +L +E T E + A L + IK+ LN++ A V Sbjct: 288 NKQGDPLDKVRLKNKVVFVL-SESSTESLATPE--DTQARLTLASPIKSGLNIAVNAGVL 344 Query: 273 L 273 L Sbjct: 345 L 345 >gi|89901662|ref|YP_524133.1| RNA methyltransferase TrmH [Rhodoferax ferrireducens T118] gi|89346399|gb|ABD70602.1| RNA methyltransferase TrmH, group 1 [Rhodoferax ferrireducens T118] Length = 286 Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 16/47 (34%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + G E G+R + + +LN+ A V Y + Sbjct: 145 FLFGCERFGMRNEDVYRCHVALSIPSDPQFGSLNLGAAVQVIAYEWR 191 >gi|323456726|gb|EGB12592.1| hypothetical protein AURANDRAFT_6321 [Aureococcus anophagefferens] Length = 173 Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVAL 273 + G EG+GL P + ++ +LNV+ A AV L Sbjct: 104 PACFMPGNEGEGLLPNQIALCDRLVYVPQFAPATASLNVNAATAVVL 150 >gi|254562318|ref|YP_003069413.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens DM4] gi|254269596|emb|CAX25567.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens DM4] Length = 245 Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++I L+ G E GL A ++ + +LN++ A + Y + Sbjct: 108 ERIGLMFGRERVGLSNDEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRR 159 >gi|240139894|ref|YP_002964371.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens AM1] gi|240009868|gb|ACS41094.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens AM1] Length = 245 Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++I L+ G E GL A ++ + +LN++ A + Y + Sbjct: 108 ERIGLMFGRERVGLSNDEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRR 159 >gi|163852560|ref|YP_001640603.1| RNA methyltransferase [Methylobacterium extorquens PA1] gi|163664165|gb|ABY31532.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium extorquens PA1] Length = 245 Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++I L+ G E GL A ++ + +LN++ A + Y + Sbjct: 108 ERIGLMFGRERVGLSNDEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRR 159 >gi|323960117|gb|EGB55762.1| RNA methyltransferase [Escherichia coli H489] Length = 228 Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN+ A V Y Sbjct: 104 WMSHAALVFGREDSGLANEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|326570852|gb|EGE20876.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7] Length = 294 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 20/46 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 KIA++ G E +GL + A + LNV++A V Sbjct: 140 PKIAILFGREDRGLTNEELSLADYHIQIPANPDYPVLNVASAIQVI 185 >gi|1199536|emb|CAA64900.1| ORF 2310 [Saccharomyces cerevisiae] gi|1903285|emb|CAA98679.1| unnamed protein product [Saccharomyces cerevisiae] Length = 482 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 55/191 (28%), Gaps = 4/191 (2%) Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHN 146 ++V I G + D V S+L++V V+ P N Sbjct: 285 KRDTNTESVNNANISCDTSPLQTKSGAWETVLDLDNKKSNDVVTRSELIVVSSLVDKPPN 344 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI---RISNLTDALQKMH 203 +G I R + + + + +K Sbjct: 345 LGGICRLCDVLGVGLLTVQDIKVKNHPQFKNVAVTADRWMPMEEVALDEIASFMKEKKKE 404 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + S K K ++LG E G+ + G+I+++ Sbjct: 405 GYTLIGLEQTDKSVKLDNNFQFPKKSLILLGTEAFGIPGTLLSELDLCLEIQQFGVIRSM 464 Query: 264 NVSNAAAVALY 274 N+ A AV ++ Sbjct: 465 NIQTATAVIVH 475 >gi|93006040|ref|YP_580477.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis K5] gi|92393718|gb|ABE74993.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis K5] Length = 293 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 IA++ G E +GL + A + LNV++A V Sbjct: 138 PNIAILFGREDRGLTNEELAYADYHVQIDANPAYPVLNVASAVQVI 183 >gi|297627066|ref|YP_003688829.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922831|emb|CBL57409.1| TRNA/rRNA methyltransferase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 258 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 18/40 (45%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ G+EG+GL + + + G +++N Sbjct: 174 LPLRCCLVFGSEGQGLTDELAAACERLVAITQYGSTRSMN 213 >gi|209542602|ref|YP_002274831.1| tRNA/rRNA methyltransferase SpoU [Gluconacetobacter diazotrophicus PAl 5] gi|209530279|gb|ACI50216.1| tRNA/rRNA methyltransferase (SpoU) [Gluconacetobacter diazotrophicus PAl 5] Length = 258 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 20/50 (40%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + L+ G E GL + A ++ + +LN++ A + Y Sbjct: 122 RTGLLFGPERAGLDNEDMARADALIRYPLNAAFMSLNLAQAVMIMAYEWW 171 >gi|146279814|ref|YP_001169972.1| hypothetical protein Rsph17025_3810 [Rhodobacter sphaeroides ATCC 17025] gi|145558055|gb|ABP72667.1| hypothetical protein Rsph17025_3810 [Rhodobacter sphaeroides ATCC 17025] Length = 243 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 23/53 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ ++ G E GL + A+++ + + +LN++ + Y + Sbjct: 109 RRVGILFGPERTGLENEDVALASAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQ 161 >gi|254424557|ref|ZP_05038275.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] gi|196192046|gb|EDX87010.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] Length = 238 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 21/43 (48%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 +A++ G+E GL + +T + + +LN++ A + Sbjct: 110 VAIVFGSERSGLSNQDIQTCDLVTTIPQITPQPSLNLAQAVMI 152 >gi|148653047|ref|YP_001280140.1| RNA methyltransferase [Psychrobacter sp. PRwf-1] gi|148572131|gb|ABQ94190.1| RNA methyltransferase, TrmH family, group 1 [Psychrobacter sp. PRwf-1] Length = 286 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 20/45 (44%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 K+A++ G E +GL + A + LNV++A V Sbjct: 134 KVAILFGREDRGLTNEELALADYHIQIDANPDYPVLNVASAVQVI 178 >gi|220924676|ref|YP_002499978.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium nodulans ORS 2060] gi|219949283|gb|ACL59675.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium nodulans ORS 2060] Length = 248 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 22/52 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +++ ++ G E GL A ++ + +LN++ + + Y + Sbjct: 113 ERVGILFGRERVGLSNDEVSLADAIVTFPVDPKHPSLNLAQSVLLVAYEWRR 164 >gi|94986089|ref|YP_605453.1| RNA methyltransferase TrmH, group 1 [Deinococcus geothermalis DSM 11300] gi|94556370|gb|ABF46284.1| RNA methyltransferase TrmH, group 1 [Deinococcus geothermalis DSM 11300] Length = 254 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 1/49 (2%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 AL+ G E GL E + +LN++ A + Y Sbjct: 106 ALVFGPEETGLVNSDLEQCQVTVRVPTAEYA-SLNLAQAVLLVCYEFLQ 153 >gi|290953042|ref|ZP_06557663.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|295313757|ref|ZP_06804333.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica URFT1] Length = 209 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 89/206 (43%), Gaps = 10/206 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99 +YG+H V + + K + NA +++ + V + + Sbjct: 4 LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 AV + L + +++LD+V DPHN GA +RSA + Sbjct: 64 KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 D II K S +A + K A GA EH + ++NL A++K+ G IGL+ ++ Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ 245 L D +A++ GAEG G+R +T+ Sbjct: 184 LYSMNLVDSVAIVAGAEGSGMRQRTK 209 >gi|50122813|ref|YP_051980.1| putative RNA methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|49613339|emb|CAG76790.1| putative RNA methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 228 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 19/55 (34%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL E A + + M +LN+ A V Y Sbjct: 102 VQWMASAALVFGREDVGLTNDELELADVLTGVPMKADYPSLNLGQAVMVYCYQLA 156 >gi|190149477|ref|YP_001968002.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262796|ref|ZP_07544423.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914608|gb|ACE60860.1| predicted rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871941|gb|EFN03658.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 345 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 86/259 (33%), Gaps = 16/259 (6%) Query: 27 HRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81 + K+ ++ R + E + +YG + A I +L AT +L Sbjct: 82 NNTMKEKKTGPLSPRAPEKIKKNRAEEMKVYGENACIALFKQRPDAIVRLWATVEGAKKL 141 Query: 82 DWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQLLM 136 H V ++++ G E L L R L+ Sbjct: 142 GDMLSYLAEHKKAYHVVDRAEMERVTGTEHHGDVCLLVKKAVPFSLEGYLQVPRKRDCLV 201 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +LD VN+ N+G I+R+ + +G+I + + SA + G P + Sbjct: 202 LLDAVNNAQNVGGIIRTCAFYGVNGVIVESADTLNSSAAARVAEGGLEFVRPLETKNKQI 261 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLH 255 Q ++ + PL + K +L +E + + E + L Sbjct: 262 ALTQLRNAGYQVVHLTRNKQAAPLAKTKLAAKTVFVL-SE---IPAQDIEYPEDTTVQLS 317 Query: 256 MPGIIKA-LNVSNAAAVAL 273 + + LNV+ + + L Sbjct: 318 FENPLNSGLNVAVSTGILL 336 >gi|32034434|ref|ZP_00134616.1| COG0566: rRNA methylases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207693|ref|YP_001052918.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae L20] gi|303250729|ref|ZP_07336925.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252028|ref|ZP_07338199.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245018|ref|ZP_07527115.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247192|ref|ZP_07529243.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307251737|ref|ZP_07533641.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253971|ref|ZP_07535823.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256232|ref|ZP_07538019.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258426|ref|ZP_07540167.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|126096485|gb|ABN73313.1| predicted rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302649458|gb|EFL79643.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650399|gb|EFL80559.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854183|gb|EFM86391.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856330|gb|EFM88482.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306860823|gb|EFM92832.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863175|gb|EFM95117.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865413|gb|EFM97309.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867610|gb|EFM99457.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 345 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 86/259 (33%), Gaps = 16/259 (6%) Query: 27 HRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81 + K+ ++ R + E + +YG + A I +L AT +L Sbjct: 82 NNTMKEKKTGPLSPRAPEKIKKNRAEEMKVYGENACIALFKQRPDAIVRLWATVEGAKKL 141 Query: 82 DWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQLLM 136 H V ++++ G E L L R L+ Sbjct: 142 GDMLSYLAEHKKAYHVVDRAEMERVTGTEHHGDVCLLVKKAVPFSLEGYLQVPRKRDCLV 201 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +LD VN+ N+G I+R+ + +G+I + + SA + G P + Sbjct: 202 LLDAVNNAQNVGGIIRTCAFYGVNGVIVESADTLNSSAAARVAEGGLEFVRPLETKNKQI 261 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLH 255 Q ++ + PL + K +L +E + + E + L Sbjct: 262 ALTQLRNAGYQVVHLTRNKQAAPLAKTKLAAKTVFVL-SE---IPAQDIEYPEDTTVQLS 317 Query: 256 MPGIIKA-LNVSNAAAVAL 273 + + LNV+ + + L Sbjct: 318 FENPLNSGLNVAVSTGILL 336 >gi|126737716|ref|ZP_01753446.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. SK209-2-6] gi|126721109|gb|EBA17813.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. SK209-2-6] Length = 248 Score = 52.9 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 23/53 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+A++ G E GL + A ++ + + +LN+ + Y + Sbjct: 112 EKVAVLFGPERAGLENEDIAKANAIISVPVNPDFASLNLGQCVLLTAYEWRRQ 164 >gi|86138325|ref|ZP_01056899.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. MED193] gi|85824850|gb|EAQ45051.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. MED193] Length = 260 Score = 52.9 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+A++ G E GL + A ++ + + +LN+ + Y Q Sbjct: 112 EKVAVLFGPERAGLENEDIARANAIISVPVNPDFASLNLGQCVLLTAYEWQRQ 164 >gi|254707157|ref|ZP_05168985.1| tRNA/rRNA methyltransferase (SpoU) [Brucella pinnipedialis M163/99/10] Length = 98 Score = 52.9 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 1/61 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K ++S K + Q G+ V AL R + A + Sbjct: 35 NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93 Query: 87 L 87 Sbjct: 94 A 94 >gi|227822189|ref|YP_002826160.1| tRNA/rRNA methyltransferase [Sinorhizobium fredii NGR234] gi|227341189|gb|ACP25407.1| tRNA/rRNA methyltransferase [Sinorhizobium fredii NGR234] Length = 275 Score = 52.9 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 18/48 (37%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +I G E GL + A + + +LN++ A + Y Sbjct: 123 IIFGRERTGLTNEEVALADEIVTFPVNPAFASLNLAQAVLLMSYEWMK 170 >gi|213691175|ref|YP_002321761.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522636|gb|ACJ51383.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457233|dbj|BAJ67854.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 282 Score = 52.9 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 24/46 (52%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 P+E + L+ GAEG GL K+ A + ++ G ++++N Sbjct: 216 PMEAYTFPKRCLLLFGAEGPGLSDKSLALADDVVYISQFGSVRSIN 261 >gi|159184955|ref|NP_354849.2| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58] gi|159140233|gb|AAK87634.2| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58] Length = 277 Score = 52.9 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K ++ G E GL + A + + +LN++ A + Y Sbjct: 119 EKTGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|50289637|ref|XP_447250.1| hypothetical protein [Candida glabrata CBS 138] gi|49526559|emb|CAG60183.1| unnamed protein product [Candida glabrata] Length = 1420 Score = 52.9 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K ++LG E G+ + G+I+++N+ A AV ++ Sbjct: 1360 NNFKFPSKSLILLGTEAHGIPGHLLNELDLCLEIKQHGVIRSMNIQTATAVIVH 1413 >gi|240963045|ref|XP_002400660.1| rRNA methylase, putative [Ixodes scapularis] gi|215490727|gb|EEC00370.1| rRNA methylase, putative [Ixodes scapularis] Length = 113 Score = 52.9 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 3/55 (5%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGI--IKALNVSNAAA 270 P + LI+G E +G+ + S+ + I +LNVS A Sbjct: 34 PWVLPPPDKPAILIVGNENQGMHRELGAVCDSVLSISPAASSDLIGSLNVSVATG 88 >gi|71065736|ref|YP_264463.1| rRNA methyltransferase SpoU family protein [Psychrobacter arcticus 273-4] gi|71038721|gb|AAZ19029.1| possible rRNA methyltransferase SpoU family protein [Psychrobacter arcticus 273-4] Length = 298 Score = 52.9 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 IA++ G E +GL + A + LNV++A V Sbjct: 142 PNIAILFGREDRGLTNEELAYADYHIQIDANPAYPVLNVASAVQVI 187 >gi|71662121|ref|XP_818072.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70883301|gb|EAN96221.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 392 Score = 52.9 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 3/72 (4%) Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + + + + + + G E +R + S L G +LN Sbjct: 264 YRHPCLHALDGGARKRSRCTLPNLVVYLFGPEDGSIRQEVLARCHSAVFLPTQG---SLN 320 Query: 265 VSNAAAVALYIT 276 ++ A V LY Sbjct: 321 LAAAVNVVLYDR 332 >gi|71650563|ref|XP_813977.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70878910|gb|EAN92126.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 392 Score = 52.9 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 3/72 (4%) Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + + + + + + G E +R + S L G +LN Sbjct: 264 YRHPCLHALDGGARKRSRCTLPNLVVYLFGPEDGSIRQEVLARCHSAVFLPTQG---SLN 320 Query: 265 VSNAAAVALYIT 276 ++ A V LY Sbjct: 321 LAAAVNVVLYDR 332 >gi|295098529|emb|CBK87619.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 228 Score = 52.9 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 21/53 (39%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +K AL+ G E GL + E A + M +LN+ A V Y Sbjct: 104 WLEKAALVFGREDSGLTNEELELADVLTGAPMVADYPSLNLGQAVMVYCYQLA 156 >gi|15804974|ref|NP_291016.1| putative RNA methyltransferase [Escherichia coli O157:H7 EDL933] gi|12519435|gb|AAG59583.1|AE005671_7 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] Length = 228 Score = 52.9 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M +LN A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNXGQAVXVYCYQLA 156 >gi|152968115|ref|YP_001363899.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans SRS30216] gi|151362632|gb|ABS05635.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans SRS30216] Length = 212 Score = 52.9 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 17/44 (38%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 + L+ G EG GL + + + G ++LNV Sbjct: 148 YDLPRECVLLFGQEGPGLSEEAVAACVDVLAIAQFGSTRSLNVG 191 >gi|23335642|ref|ZP_00120876.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A] Length = 231 Score = 52.9 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 P+E + L+ GAEG GL K A + ++ G ++++N Sbjct: 165 PMEAYAFPKRCLLLFGAEGPGLSEKALALADDVVYISQFGSVRSIN 210 >gi|163736384|ref|ZP_02143803.1| RNA methyltransferase TrmH, group 1 [Phaeobacter gallaeciensis BS107] gi|161390254|gb|EDQ14604.1| RNA methyltransferase TrmH, group 1 [Phaeobacter gallaeciensis BS107] Length = 280 Score = 52.9 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 23/53 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+A++ G E GL + A ++ + + +LN+ + Y + Sbjct: 144 EKVAVMFGPERAGLENEDIARANAIISVPVNPEFASLNLGQCVLLTAYEWRRQ 196 >gi|163741081|ref|ZP_02148473.1| RNA methyltransferase, TrmH family, group 1 [Phaeobacter gallaeciensis 2.10] gi|161385434|gb|EDQ09811.1| RNA methyltransferase, TrmH family, group 1 [Phaeobacter gallaeciensis 2.10] Length = 232 Score = 52.9 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 23/53 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+A++ G E GL + A ++ + + +LN+ + Y + Sbjct: 96 EKVAVMFGPERAGLENEDIARANAIISVPVNPEFASLNLGQCVLLTAYEWRRQ 148 >gi|308048484|ref|YP_003912050.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica DSM 9799] gi|307630674|gb|ADN74976.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica DSM 9799] Length = 226 Score = 52.9 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +A++ G E GL + + + + +LN+ A + LY Sbjct: 109 VAVVFGCEESGLSNEDLALVDLLTTIPLVNPYPSLNLGQA--IMLYA 153 >gi|56696923|ref|YP_167285.1| RNA methyltransferase [Ruegeria pomeroyi DSS-3] gi|56678660|gb|AAV95326.1| RNA methyltransferase, TrmH family, group 1 [Ruegeria pomeroyi DSS-3] Length = 248 Score = 52.9 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 21/53 (39%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+A++ G E GL A ++ + + +LN+ + Y Sbjct: 112 EKVAVLFGPERAGLENDDIARANAIITVPVNPDYASLNLGQCVLLVAYEWMRQ 164 >gi|311281011|ref|YP_003943242.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae SCF1] gi|308750206|gb|ADO49958.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae SCF1] Length = 228 Score = 52.9 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 AL+ G E GL A + + M +LN+ A V Y Sbjct: 103 QWLQHAALVFGREDSGLTNDELALADVLTGVPMVADYPSLNLGQAVMVYCYQL 155 >gi|120556563|ref|YP_960914.1| putative RNA methyltransferase [Marinobacter aquaeolei VT8] gi|120326412|gb|ABM20727.1| RNA methyltransferase, TrmH family, group 1 [Marinobacter aquaeolei VT8] Length = 226 Score = 52.9 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 7/55 (12%) Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-----TQNH 279 AL+ G E +GL + + M +LN+S A V LY Sbjct: 109 ALVFGREDRGLANEELALCDLLTGFPMAVSYPSLNLSQA--VMLYAWELSGLARQ 161 >gi|239908205|ref|YP_002954946.1| putative RNA methyltransferase [Desulfovibrio magneticus RS-1] gi|239798071|dbj|BAH77060.1| putative RNA methyltransferase [Desulfovibrio magneticus RS-1] Length = 250 Score = 52.9 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 17/44 (38%) Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 E GL + + + + ++ +LN++ A V Y Sbjct: 117 PEDAGLSNQETQLCSRLVNIPTADEATSLNLAQAVLVVCYEIFK 160 >gi|254583948|ref|XP_002497542.1| ZYRO0F07942p [Zygosaccharomyces rouxii] gi|238940435|emb|CAR28609.1| ZYRO0F07942p [Zygosaccharomyces rouxii] Length = 1434 Score = 52.5 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 22/53 (41%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K ++LG E G+ + G+I+++N+ A AV ++ Sbjct: 1375 HYKFPAKSLVVLGTEAHGIPGHLLSELDLCLEIRQFGVIRSMNIQTATAVIVH 1427 >gi|156935477|ref|YP_001439393.1| putative RNA methyltransferase [Cronobacter sakazakii ATCC BAA-894] gi|156533731|gb|ABU78557.1| hypothetical protein ESA_03336 [Cronobacter sakazakii ATCC BAA-894] Length = 228 Score = 52.5 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 18/48 (37%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 AL+ G E GL A + + M +LN+ A V Y Sbjct: 108 TALVFGREDSGLTNDELALADVLTGVPMVADYPSLNLGQAVMVYCYQL 155 >gi|326403597|ref|YP_004283679.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acidiphilium multivorum AIU301] gi|325050459|dbj|BAJ80797.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acidiphilium multivorum AIU301] Length = 257 Score = 52.5 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K ++ G E GL A S+ + +LN++ A V Y Sbjct: 122 KCGILFGPERAGLDNDDIACADSLIRYPLNPRFMSLNLAQAVMVMAYEWW 171 >gi|148260405|ref|YP_001234532.1| tRNA/rRNA methyltransferase (SpoU) [Acidiphilium cryptum JF-5] gi|146402086|gb|ABQ30613.1| tRNA/rRNA methyltransferase (SpoU) [Acidiphilium cryptum JF-5] Length = 257 Score = 52.5 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K ++ G E GL A S+ + +LN++ A V Y Sbjct: 122 KCGILFGPERAGLDNDDIACADSLIRYPLNPRFMSLNLAQAVMVMAYEWW 171 >gi|256061276|ref|ZP_05451426.1| RNA methyltransferase [Brucella neotomae 5K33] gi|261325283|ref|ZP_05964480.1| RNA methyltransferase [Brucella neotomae 5K33] gi|261301263|gb|EEY04760.1| RNA methyltransferase [Brucella neotomae 5K33] Length = 276 Score = 52.5 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K ++ G E GL + A + + +LN++ A + Y Sbjct: 119 EKTGILFGRERFGLSNEEVGLADELLTFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|256372440|ref|YP_003110264.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM 10331] gi|256009024|gb|ACU54591.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM 10331] Length = 232 Score = 52.5 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 82/224 (36%), Gaps = 6/224 (2%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110 L G + AA+ + + QL+ A+ R V + + I Sbjct: 2 LEGARFLRAAVAAGAH-VEQLVGVDEAIRREADLVASARSVV--VVTQRELAAISATTTP 58 Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170 + ++ ++A+ + +++ LD V DP N+G ++R+A A S D + Sbjct: 59 Q--GLVGVLRRVTVPVEALEDRLVVLALDGVQDPGNVGTLVRTAAALS-DAVGVLVGPGS 115 Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230 ++ + + A + D + P + + Sbjct: 116 ADPFNPKAARAAAGALERVPIAEVDELTPALRELRVRGARVIGLDPRAPSPLAPETQRRV 175 Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L++GAEG GL A L +P +++LN + A A+AL+ Sbjct: 176 LVVGAEGAGLSAAVDGELDERAALVVPPRLESLNAAVAGALALW 219 >gi|148560334|ref|YP_001259115.1| RNA methyltransferase [Brucella ovis ATCC 25840] gi|225627665|ref|ZP_03785702.1| RNA methyltransferase, TrmH family, group 1 [Brucella ceti str. Cudo] gi|237815613|ref|ZP_04594610.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus str. 2308 A] gi|260546656|ref|ZP_05822395.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] gi|260565552|ref|ZP_05836036.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260566275|ref|ZP_05836745.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261758385|ref|ZP_06002094.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] gi|265999435|ref|ZP_05466349.2| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|297248503|ref|ZP_06932221.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 5 str. B3196] gi|148371591|gb|ABQ61570.1| RNA methyltransferase, TrmH family, group 1 [Brucella ovis ATCC 25840] gi|225617670|gb|EEH14715.1| RNA methyltransferase, TrmH family, group 1 [Brucella ceti str. Cudo] gi|237788911|gb|EEP63122.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus str. 2308 A] gi|260095706|gb|EEW79583.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] gi|260151620|gb|EEW86714.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260155793|gb|EEW90873.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261738369|gb|EEY26365.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] gi|263093946|gb|EEZ17880.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|297175672|gb|EFH35019.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 5 str. B3196] Length = 291 Score = 52.5 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K ++ G E GL + A + + +LN++ A + Y Sbjct: 134 EKTGILFGRERFGLSNEEVGLADELLTFPVNPAFASLNIAQAVLLMSYEWMK 185 >gi|17987077|ref|NP_539711.1| SpoU rRNA methylase family [Brucella melitensis bv. 1 str. 16M] gi|23502073|ref|NP_698200.1| RNA methyltransferase [Brucella suis 1330] gi|62290107|ref|YP_221900.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941] gi|82700030|ref|YP_414604.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar Abortus 2308] gi|161619151|ref|YP_001593038.1| RNA methyltransferase [Brucella canis ATCC 23365] gi|163843461|ref|YP_001627865.1| RNA methyltransferase [Brucella suis ATCC 23445] gi|189024345|ref|YP_001935113.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] gi|225852692|ref|YP_002732925.1| TrmH family RNA methyltransferase [Brucella melitensis ATCC 23457] gi|254689416|ref|ZP_05152670.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|254693901|ref|ZP_05155729.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|254697551|ref|ZP_05159379.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|254701936|ref|ZP_05163764.1| RNA methyltransferase [Brucella suis bv. 5 str. 513] gi|254704481|ref|ZP_05166309.1| RNA methyltransferase [Brucella suis bv. 3 str. 686] gi|254706623|ref|ZP_05168451.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|254710267|ref|ZP_05172078.1| RNA methyltransferase [Brucella pinnipedialis B2/94] gi|254714264|ref|ZP_05176075.1| RNA methyltransferase [Brucella ceti M644/93/1] gi|254717700|ref|ZP_05179511.1| RNA methyltransferase [Brucella ceti M13/05/1] gi|254730445|ref|ZP_05189023.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|256031761|ref|ZP_05445375.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|256044846|ref|ZP_05447750.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|256113751|ref|ZP_05454555.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|256159931|ref|ZP_05457649.1| RNA methyltransferase [Brucella ceti M490/95/1] gi|256255162|ref|ZP_05460698.1| RNA methyltransferase [Brucella ceti B1/94] gi|256257662|ref|ZP_05463198.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|260168895|ref|ZP_05755706.1| RNA methyltransferase [Brucella sp. F5/99] gi|260754938|ref|ZP_05867286.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260758154|ref|ZP_05870502.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260761980|ref|ZP_05874323.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260883948|ref|ZP_05895562.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|261214190|ref|ZP_05928471.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|261219543|ref|ZP_05933824.1| RNA methyltransferase [Brucella ceti M13/05/1] gi|261222359|ref|ZP_05936640.1| RNA methyltransferase [Brucella ceti B1/94] gi|261314083|ref|ZP_05953280.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261317829|ref|ZP_05957026.1| RNA methyltransferase [Brucella pinnipedialis B2/94] gi|261322038|ref|ZP_05961235.1| RNA methyltransferase [Brucella ceti M644/93/1] gi|261752502|ref|ZP_05996211.1| RNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261755161|ref|ZP_05998870.1| RNA methyltransferase [Brucella suis bv. 3 str. 686] gi|265988859|ref|ZP_06101416.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|265991274|ref|ZP_06103831.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|265995110|ref|ZP_06107667.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|265998324|ref|ZP_06110881.1| RNA methyltransferase [Brucella ceti M490/95/1] gi|294852531|ref|ZP_06793204.1| tRNA/rRNA methyltransferase [Brucella sp. NVSL 07-0026] gi|17982735|gb|AAL51975.1| spou family of rRNA methylases [Brucella melitensis bv. 1 str. 16M] gi|23348030|gb|AAN30115.1| RNA methyltransferase, TrmH family, group 1 [Brucella suis 1330] gi|62196239|gb|AAX74539.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus bv. 1 str. 9-941] gi|82616131|emb|CAJ11174.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH family, group 1 [Brucella melitensis biovar Abortus 2308] gi|161335962|gb|ABX62267.1| RNA methyltransferase, TrmH family, group 1 [Brucella canis ATCC 23365] gi|163674184|gb|ABY38295.1| RNA methyltransferase, TrmH family, group 1 [Brucella suis ATCC 23445] gi|189019917|gb|ACD72639.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] gi|225641057|gb|ACO00971.1| RNA methyltransferase, TrmH family, group 1 [Brucella melitensis ATCC 23457] gi|260668472|gb|EEX55412.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260672412|gb|EEX59233.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260675046|gb|EEX61867.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260873476|gb|EEX80545.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|260915797|gb|EEX82658.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|260920943|gb|EEX87596.1| RNA methyltransferase [Brucella ceti B1/94] gi|260924632|gb|EEX91200.1| RNA methyltransferase [Brucella ceti M13/05/1] gi|261294728|gb|EEX98224.1| RNA methyltransferase [Brucella ceti M644/93/1] gi|261297052|gb|EEY00549.1| RNA methyltransferase [Brucella pinnipedialis B2/94] gi|261303109|gb|EEY06606.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261742255|gb|EEY30181.1| RNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261744914|gb|EEY32840.1| RNA methyltransferase [Brucella suis bv. 3 str. 686] gi|262552792|gb|EEZ08782.1| RNA methyltransferase [Brucella ceti M490/95/1] gi|262766223|gb|EEZ12012.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263002058|gb|EEZ14633.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|264661056|gb|EEZ31317.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|294821120|gb|EFG38119.1| tRNA/rRNA methyltransferase [Brucella sp. NVSL 07-0026] gi|326409214|gb|ADZ66279.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis M28] gi|326538923|gb|ADZ87138.1| RNA methyltransferase, TrmH family, group 1 [Brucella melitensis M5-90] Length = 276 Score = 52.5 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K ++ G E GL + A + + +LN++ A + Y Sbjct: 119 EKTGILFGRERFGLSNEEVGLADELLTFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|261338997|ref|ZP_05966855.1| hypothetical protein ENTCAN_05202 [Enterobacter cancerogenus ATCC 35316] gi|288318828|gb|EFC57766.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cancerogenus ATCC 35316] Length = 228 Score = 52.5 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 18/54 (33%) Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL A + + M +LN+ A V Y Sbjct: 103 QWLTHAALVFGREDSGLTNDELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156 >gi|110633621|ref|YP_673829.1| RNA methyltransferase [Mesorhizobium sp. BNC1] gi|110284605|gb|ABG62664.1| RNA methyltransferase, TrmH family, group 1 [Chelativorans sp. BNC1] Length = 262 Score = 52.5 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 19/52 (36%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ G E GL + A + + +LNV+ A + Y Sbjct: 119 QRTGILFGRERWGLTNEEVAVADEIVTFPVNPAFASLNVAQAVLLMSYEWLK 170 >gi|254475698|ref|ZP_05089084.1| tRNA/rRNA methyltransferase [Ruegeria sp. R11] gi|214029941|gb|EEB70776.1| tRNA/rRNA methyltransferase [Ruegeria sp. R11] Length = 248 Score = 52.5 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 22/53 (41%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K+A++ G E GL + A ++ + + +LN+ + Y + Sbjct: 112 QKVAVMFGPERAGLENEDVARANAIITVPVNPEFASLNLGQCVLLTAYEWRRQ 164 >gi|329890697|ref|ZP_08269040.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC 11568] gi|328845998|gb|EGF95562.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC 11568] Length = 261 Score = 52.5 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K L+ G E GL + + + +LN++ A A+ Y + Sbjct: 112 KTGLLFGGERAGLETGDIALCAGITTIPIDPKHHSLNLAQAVAINAYEWR 161 >gi|148244602|ref|YP_001219296.1| RNA methyltransferase [Candidatus Vesicomyosocius okutanii HA] gi|146326429|dbj|BAF61572.1| RNA methyltransferase, TrmH family [Candidatus Vesicomyosocius okutanii HA] Length = 247 Score = 52.5 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%) Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 ++ + Q + + +K I + ++A+I G E GL K + + + Sbjct: 89 RQRNIKWRQMDVVGTCNKIQKTITIDSQEVAVIFGTEKSGLTNKELDLCQILMTIPGNPD 148 Query: 260 IKALNVSNAAAVALY 274 +LNV++A V Y Sbjct: 149 YFSLNVASAIQVFAY 163 >gi|325293270|ref|YP_004279134.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3] gi|325061123|gb|ADY64814.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3] Length = 280 Score = 52.5 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 20/52 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ ++ G E GL + A + + +LN++ A + Y Sbjct: 119 ERTGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|312067485|ref|XP_003136765.1| hypothetical protein LOAG_01177 [Loa loa] gi|307768079|gb|EFO27313.1| hypothetical protein LOAG_01177 [Loa loa] Length = 612 Score = 52.5 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 21/54 (38%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + K+ L+LG E G+ + G ++LNV A+ +Y Sbjct: 548 HKIRLPSKMVLLLGNEKGGIPMDLLGYLDKTVEVVQIGHTRSLNVHVTGALFIY 601 >gi|255264175|ref|ZP_05343517.1| RNA methyltransferase, TrmH family, group 1 [Thalassiobium sp. R2A62] gi|255106510|gb|EET49184.1| RNA methyltransferase, TrmH family, group 1 [Thalassiobium sp. R2A62] Length = 302 Score = 52.5 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 23/53 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+A++ G E G+ A ++ + + +LN++ + Y Q Sbjct: 165 EKVAVMFGPERAGMENDDIARANAIISVPVNPDFASLNLAQCVLLVGYEWQRQ 217 >gi|6320091|ref|NP_010171.1| Trm3p [Saccharomyces cerevisiae S288c] gi|74627230|sp|Q07527|TRM3_YEAST RecName: Full=tRNA guanosine-2'-O-methyltransferase TRM3; AltName: Full=tRNA [Gm18] methyltransferase; AltName: Full=tRNA methylase 3 gi|1431162|emb|CAA98680.1| unnamed protein product [Saccharomyces cerevisiae] gi|285810924|tpg|DAA11748.1| TPA: Trm3p [Saccharomyces cerevisiae S288c] Length = 1436 Score = 52.5 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 55/191 (28%), Gaps = 4/191 (2%) Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHN 146 ++V I G + D V S+L++V V+ P N Sbjct: 1239 KRDTNTESVNNANISCDTSPLQTKSGAWETVLDLDNKKSNDVVTRSELIVVSSLVDKPPN 1298 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI---RISNLTDALQKMH 203 +G I R + + + + +K Sbjct: 1299 LGGICRLCDVLGVGLLTVQDIKVKNHPQFKNVAVTADRWMPMEEVALDEIASFMKEKKKE 1358 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + S K K ++LG E G+ + G+I+++ Sbjct: 1359 GYTLIGLEQTDKSVKLDNNFQFPKKSLILLGTEAFGIPGTLLSELDLCLEIQQFGVIRSM 1418 Query: 264 NVSNAAAVALY 274 N+ A AV ++ Sbjct: 1419 NIQTATAVIVH 1429 >gi|317052415|ref|YP_004113531.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5] gi|316947499|gb|ADU66975.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5] Length = 158 Score = 52.5 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 4/151 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL P N G I R V C + ++ L ++ EH+P Sbjct: 1 MLNVVLFEPRIPQNTGNIGRLCVLTGCRLHLIEPLGFSLDARHLRRAGLDYWEHLPLRVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETA-TS 250 L + L+ ++ G+++ +++P Q + + +I G E G+ Sbjct: 61 GTLAEFLEYVNFQKGTLCGITTKARRPYTQIPVDGGPLFVIFGREDTGMTEALHGACGEK 120 Query: 251 MAHLHMPGII--KALNVSNAAAVALYITQNH 279 L M +++N+S++ AV +Y Sbjct: 121 RYRLPMRECSSCRSMNLSSSVAVVVYDILRR 151 >gi|254437829|ref|ZP_05051323.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307] gi|198253275|gb|EDY77589.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307] Length = 257 Score = 52.1 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 23/52 (44%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K+A+I G E G+ A ++ + + +LN++ + Y + Sbjct: 124 EKVAVIFGPERSGMDNSDIAHANAIITVPVNPDFPSLNLAQCVLLVGYEWRR 175 >gi|159044062|ref|YP_001532856.1| putative tRNA/rRNA methyltransferase [Dinoroseobacter shibae DFL 12] gi|157911822|gb|ABV93255.1| putative tRNA/rRNA methyltransferase [Dinoroseobacter shibae DFL 12] Length = 255 Score = 52.1 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 22/53 (41%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++A++ G E GL + A ++ + + +LN++ + Y Sbjct: 116 QRVAVLFGPERAGLENEDIALANAIVSVPVNPAFPSLNLAQCVLLTAYEWGRQ 168 >gi|50955804|ref|YP_063092.1| tRNA/rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952286|gb|AAT89987.1| tRNA/rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 218 Score = 52.1 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 5/169 (2%) Query: 96 VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 V + + V + LD R + +++ NIG+I+RSA Sbjct: 35 VFDPELLRTGDTRNVIDRYRYWRMEAIVADLDQ-RRHPFHVAIENWQHDMNIGSIVRSAN 93 Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215 AF+ D + R ++ + L H + + + S Sbjct: 94 AFAADTVHIVGRRRWNKRGAMVTDRYQHLRHHDNVDSFVAWARADGLPIVAVDNVPGSVR 153 Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + L+ G EG GL A ++ + G +++N Sbjct: 154 IET----TGLPRECVLLFGQEGPGLSEPAIAAADTVVEISQFGSTRSIN 198 >gi|190345104|gb|EDK36926.2| hypothetical protein PGUG_01024 [Meyerozyma guilliermondii ATCC 6260] Length = 395 Score = 52.1 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM----PGIIKALNVSNAAAVA 272 + L++G+EG G+R Q + + L GI+ +LNVS A A+ Sbjct: 339 PVLLVMGSEGAGVRTHLQLRSDYLVGLSKGREDEGIVDSLNVSVACALM 387 Score = 39.8 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 4/84 (4%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 K++ Y+ R + R+ + P ++YG H V AAL R F L Sbjct: 72 KEAEYSSQRESSRETTSYRPTGMS----RNPVYEYIYGTHPVLAALTGGKRDSFNRLFVF 127 Query: 76 NALARLDWDANLPHPFPVKTVPPQ 99 N + + V Q Sbjct: 128 NPKEGTSQILSQAKKLGISIVTKQ 151 >gi|146423438|ref|XP_001487647.1| hypothetical protein PGUG_01024 [Meyerozyma guilliermondii ATCC 6260] Length = 395 Score = 52.1 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM----PGIIKALNVSNAAAVA 272 + L++G+EG G+R Q + + L GI+ +LNVS A A+ Sbjct: 339 PVLLVMGSEGAGVRTHLQLRSDYLVGLSKGREDEGIVDSLNVSVACALM 387 Score = 39.8 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 4/84 (4%) Query: 16 KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75 K++ Y+ R + R+ + P ++YG H V AAL R F L Sbjct: 72 KEAEYSSQRESSRETTSYRPTGMS----RNPVYEYIYGTHPVLAALTGGKRDSFNRLFVF 127 Query: 76 NALARLDWDANLPHPFPVKTVPPQ 99 N + + V Q Sbjct: 128 NPKEGTSQILSQAKKLGISIVTKQ 151 >gi|15965543|ref|NP_385896.1| hypothetical protein SMc00482 [Sinorhizobium meliloti 1021] gi|307302663|ref|ZP_07582419.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti BL225C] gi|307318510|ref|ZP_07597944.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti AK83] gi|15074724|emb|CAC46369.1| Hypothetical tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021] gi|306895850|gb|EFN26602.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti AK83] gi|306903027|gb|EFN33618.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti BL225C] Length = 276 Score = 52.1 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + +K+ +I G E GL A + + +LN++ A + Y Sbjct: 113 HRFKEGEKVGIIFGRERTGLTNAEVALADEIVTFPVNPAFASLNLAQAVLLMSYEWLK 170 >gi|151941891|gb|EDN60247.1| Gm18 tRNA methyltransferase [Saccharomyces cerevisiae YJM789] Length = 1436 Score = 52.1 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 55/191 (28%), Gaps = 4/191 (2%) Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHN 146 ++V I G + D V S+L++V V+ P N Sbjct: 1239 KRDTNTESVNSSNISCDTSPLQTKSGAWETVLDLDNKKSNDVVTRSELIVVSSLVDKPPN 1298 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI---RISNLTDALQKMH 203 +G I R + + + + +K Sbjct: 1299 LGGICRLCDVLGVGLLTVQDIKVKNHPQFKNVAVTADRWMPMEEVALDEIASFMKGKKKE 1358 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + S K K ++LG E G+ + G+I+++ Sbjct: 1359 GYTLIGLEQTDKSVKLDNSFQFPKKSLILLGTEAFGIPGTLLSELDLCLEIQQFGVIRSM 1418 Query: 264 NVSNAAAVALY 274 N+ A AV ++ Sbjct: 1419 NIQTATAVIVH 1429 >gi|222148422|ref|YP_002549379.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4] gi|221735410|gb|ACM36373.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4] Length = 286 Score = 52.1 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 21/52 (40%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K ++ G E GL+ + A + + +LN++ A + Y Sbjct: 119 EKTGILFGREKSGLKNEDVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|190405115|gb|EDV08382.1| hypothetical protein SCRG_00607 [Saccharomyces cerevisiae RM11-1a] gi|259145133|emb|CAY78397.1| Trm3p [Saccharomyces cerevisiae EC1118] Length = 1436 Score = 52.1 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 55/191 (28%), Gaps = 4/191 (2%) Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHN 146 ++V I G + D V S+L++V V+ P N Sbjct: 1239 KRDTNTESVNSSNISCDTSPLQTKSGAWETVLDLDNKKSNDVVTRSELIVVSSLVDKPPN 1298 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI---RISNLTDALQKMH 203 +G I R + + + + +K Sbjct: 1299 LGGICRLCDVLGVGLLTVQDIKVKNHPQFKNVAVTADRWMPMEEVALDEIASFMKGKKKE 1358 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + S K K ++LG E G+ + G+I+++ Sbjct: 1359 GYTLIGLEQTDKSVKLDNSFQFPKKSLILLGTEAFGIPGTLLSELDLCLEIQQFGVIRSM 1418 Query: 264 NVSNAAAVALY 274 N+ A AV ++ Sbjct: 1419 NIQTATAVIVH 1429 >gi|68536793|ref|YP_251498.1| putative rRNA methylase, SpoU class [Corynebacterium jeikeium K411] gi|260579148|ref|ZP_05847040.1| SpoU rRNA methylase family protein [Corynebacterium jeikeium ATCC 43734] gi|68264392|emb|CAI37880.1| putative rRNA methylase, SpoU class [Corynebacterium jeikeium K411] gi|258602747|gb|EEW16032.1| SpoU rRNA methylase family protein [Corynebacterium jeikeium ATCC 43734] Length = 171 Score = 52.1 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 42/142 (29%), Gaps = 5/142 (3%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N L +V D P N G +R + + + ++ E Sbjct: 11 NPPLHVVFDRPEIPPNTGNAIRMCAGTGASLHLAGPLAFKFDDKHVRRAGLDYHELADVH 70 Query: 191 RISNLTD---ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE- 246 + + + + ++ + + L+ G E GL + Sbjct: 71 VHEGIDEALAHVTDPARGSGRVFAFTAQTGTWFTEVDYQPGDVLLFGPEPTGLADEVLAD 130 Query: 247 -TATSMAHLHMPGIIKALNVSN 267 T+ + M +++N+SN Sbjct: 131 PRVTAKVRIPMLPGRRSMNLSN 152 >gi|118468881|ref|YP_886013.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium smegmatis str. MC2 155] gi|118170168|gb|ABK71064.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium smegmatis str. MC2 155] Length = 154 Score = 52.1 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 4/137 (2%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++ N G +R A C+ + L ++ H Sbjct: 1 MFRVMFFSPRIAPNTGNAIRMVAATGCELHLVHPLGFDLSEPKLRRAGLDY--HDLASVT 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 + + ++ + P L+ G E GL +T T Sbjct: 59 VHDDLPSAWQALMPARVYVFTAHASTPFTDIAYRPGDVLMFGPEPTGLDEQTLADPHITE 118 Query: 251 MAHLHMPGIIKALNVSN 267 + M ++LN+SN Sbjct: 119 QIRIPMLAGRRSLNLSN 135 >gi|72162085|ref|YP_289742.1| tRNA/rRNA methyltransferase [Thermobifida fusca YX] gi|71915817|gb|AAZ55719.1| probable tRNA/rRNA methyltransferase [Thermobifida fusca YX] Length = 184 Score = 52.1 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 63/141 (44%), Gaps = 1/141 (0%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 ++++ ++++ V P N+G+ILR+A F D + T E + K+A G Sbjct: 16 HWRRHTHNRISLIVESVTQPFNLGSILRTAATFGVDTLWLTGNAVTPEHRQVHKTALGTQ 75 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + + + + +A+ + G++ + L + PL + + L +GAE G P Sbjct: 76 TKVRWEKTATSAEAVAAARAAGYRVVALELAHGAVPLHRAPLTGDVCLAVGAEDHGCSPA 135 Query: 244 TQETATSMAHLHMPGIIKALN 264 ++ ++ G + +LN Sbjct: 136 LLAAVDAVTYIPQTGRVGSLN 156 >gi|84687187|ref|ZP_01015068.1| tRNA/rRNA methyltransferase (SpoU) [Maritimibacter alkaliphilus HTCC2654] gi|84664775|gb|EAQ11258.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium HTCC2654] Length = 249 Score = 52.1 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 23/53 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++A++ G E GL + A ++ + + +LN++ + + Y Sbjct: 115 KRVAVLFGPERAGLENEDVSRANAIITVPVNPEFASLNLAQSVLLTAYEYGRQ 167 >gi|33151661|ref|NP_873014.1| putative tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP] gi|33147882|gb|AAP95403.1| conserved putative tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP] Length = 349 Score = 52.1 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 92/268 (34%), Gaps = 17/268 (6%) Query: 14 SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73 ++K++ A ++ ++ + ++ ++ +YG + + + I +L A Sbjct: 82 NVKNNKLATEKKTGPL--SPRAPEKIKKNRAEEMK--VYGENACLSVFQQRPQAIVRLWA 137 Query: 74 TKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL-----ETAPLLSPTL 126 T +L + V +D++ G H G +L L Sbjct: 138 TVEGAKKLADELSYLANQKKAYHIVDRIEMDRVTG--TPHHGDICLLVKKSAPFILEGYL 195 Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 + R L++LD++++ NIG I+R+ ++ GII + SA + G Sbjct: 196 NIPRKRDCLVLLDNIHNAQNIGGIMRTCAFYNVKGIIVENSDTLHSSAAARVAEGGLEFI 255 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246 P Q + + L + K+ +L E Sbjct: 256 RPLESKHKEIALTQLRQAGYQIVHLTRNKQAPSLAKTTLAAKVVFVL-NEIP--TQDIAY 312 Query: 247 TATSMAHLHMPGIIK-ALNVSNAAAVAL 273 + L ++ +LNV+ +A + L Sbjct: 313 PNDTTVQLSFENLLNSSLNVTVSAGILL 340 >gi|254993163|ref|ZP_05275353.1| hypothetical protein LmonocytoFSL_09103 [Listeria monocytogenes FSL J2-064] Length = 47 Score = 52.1 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 9/29 (31%), Positives = 14/29 (48%) Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281 + M I++LN+SN AA+ Y Sbjct: 2 RIPMTDHIRSLNLSNTAAILAYEALRQQN 30 >gi|150396729|ref|YP_001327196.1| RNA methyltransferase [Sinorhizobium medicae WSM419] gi|150028244|gb|ABR60361.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium medicae WSM419] Length = 276 Score = 52.1 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 19/52 (36%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K+ +I G E GL A + + +LN++ A + Y Sbjct: 119 QKVGIIFGRERTGLTNAEVALADEIVTFPVNPAFASLNLAQAVLLMSYEWLK 170 >gi|297562843|ref|YP_003681817.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847291|gb|ADH69311.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 250 Score = 52.1 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 17/42 (40%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L+ G EG GL + + ++ + G +++N Sbjct: 171 YPLPRNAVLVFGQEGPGLSEEVRRVCRAVLSISQFGSTRSIN 212 >gi|254444144|ref|ZP_05057620.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium DG1235] gi|198258452|gb|EDY82760.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium DG1235] Length = 241 Score = 52.1 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 67/234 (28%), Gaps = 17/234 (7%) Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQ 112 H V + + + +L P V + ++ G H Sbjct: 2 HAVGSLFHCKPFIVERLYFEMELAPMFGEICKFLAKEKKPYNQVDSAELLRVSG--TPHH 59 Query: 113 GLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 G + P L + +++LD V+ N+G I R++ F + + Sbjct: 60 GGVVAIVRRRPPELATTTAAEFWAKEGMPMLILDGVSSVANLGGIARTSAYFGVEKFLIA 119 Query: 166 KRYSPSESAVLAKS------ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 + A L + + + Sbjct: 120 ATRKQARPCEEAYREARGGLDMVDLRLVDNVPSFLKGARKTHFVIGLDIEGPPLPELMGI 179 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 ++ +A+++G E GL +++ + + + G I L+V A+ L Sbjct: 180 CPEDELEKPVAIVIGNEETGLHESSKQECSVLVGIPGSGAIDRLSVVAETALLL 233 >gi|217976583|ref|YP_002360730.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2] gi|217501959|gb|ACK49368.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2] Length = 281 Score = 52.1 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 17/48 (35%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ G E GL A + + +LN++ A + Y Sbjct: 130 VMFGPERTGLSNDEVALADRLITFPVNPAYASLNLAQAVLLIGYEWMR 177 >gi|254428520|ref|ZP_05042227.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881] gi|196194689|gb|EDX89648.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881] Length = 220 Score = 52.1 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 20/53 (37%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++A++ G E GL + + + +LN+ A V + + Sbjct: 104 QRVAIVFGREASGLTGDEVARCDLASSIPLAQAQPSLNLGQAVMVYAWELRKR 156 >gi|84501049|ref|ZP_00999284.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola batsensis HTCC2597] gi|84391116|gb|EAQ03534.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola batsensis HTCC2597] Length = 244 Score = 52.1 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 25/53 (47%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+A++ G E GL A ++ ++ + +LN++ + Y + H Sbjct: 108 EKVAVLFGPERAGLENDDVVRANTIINVPVNPDFPSLNLAQCVLLCAYEWRRH 160 >gi|67478105|ref|XP_654474.1| RNA methyltransferase, TrmH family [Entamoeba histolytica HM-1:IMSS] gi|56471520|gb|EAL49084.1| RNA methyltransferase, TrmH family, putative [Entamoeba histolytica HM-1:IMSS] Length = 350 Score = 52.1 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 23/61 (37%) Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + + L+ G E GL + + + + + LN+S+A +A Sbjct: 186 MTMQEAGDMLSTMKGCVGLVFGNESNGLNTEECDACDLLNKIDIRSHYPVLNLSHAVGIA 245 Query: 273 L 273 L Sbjct: 246 L 246 >gi|254294666|ref|YP_003060689.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814] gi|254043197|gb|ACT59992.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814] Length = 165 Score = 52.1 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 3/102 (2%) Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235 ++ + + + + + +D L + A +LG Sbjct: 44 DMYASDTSKAYENMPYYNWDSIEDMALPRGCQLVGIELTDDAVELPEFKHPRAAAYVLGR 103 Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 E L P+ + + I NVS A A+ +Y Sbjct: 104 ELGNLSPEMMAKCHHIVKIPTKFCI---NVSLAGALVMYDRM 142 >gi|207347023|gb|EDZ73341.1| YDL112Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 1436 Score = 52.1 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 55/191 (28%), Gaps = 4/191 (2%) Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHN 146 ++V I G + D V S+L++V V+ P N Sbjct: 1239 KRDTNTESVNSANISCDTSPLQTKSGAWETVLDLDNKKSNDVVTRSELIVVSSLVDKPPN 1298 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI---RISNLTDALQKMH 203 +G I R + + + + +K Sbjct: 1299 LGGICRLCDVLGVGLLTVQDIKVKNHPQFKNVAVTADRWMPMEEVALDEIASFMKGKKKE 1358 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + S K K ++LG E G+ + G+I+++ Sbjct: 1359 GYTLIGLEQTDKSVKLDNNFQFPKKSLILLGTEAFGIPGTLLSELDLCLEIQQFGVIRSM 1418 Query: 264 NVSNAAAVALY 274 N+ A AV ++ Sbjct: 1419 NIQTATAVIVH 1429 >gi|310816156|ref|YP_003964120.1| RNA methyltransferase, TrmH family, group 1 [Ketogulonicigenium vulgare Y25] gi|308754891|gb|ADO42820.1| RNA methyltransferase, TrmH family, group 1 [Ketogulonicigenium vulgare Y25] Length = 245 Score = 52.1 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 22/52 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K+A++ G E G+ A + + + +LN++ + Y + Sbjct: 112 EKVAIMFGPERAGMENDDIARANVIITVPVNPEFPSLNLAQCVLLTAYEWRR 163 >gi|256274094|gb|EEU09005.1| Trm3p [Saccharomyces cerevisiae JAY291] Length = 1436 Score = 52.1 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 54/191 (28%), Gaps = 4/191 (2%) Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHN 146 ++V I G + D V S+L++V V+ P N Sbjct: 1239 KRDTNTESVNNANISCDTSPLQTKSGAWETVLDLDNKKSNDVVTRSELIVVSSLVDKPPN 1298 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI---RISNLTDALQKMH 203 + I R + + + + +K Sbjct: 1299 LRGICRLCDVLGVGLLTVQDIKVKNHPQFKNVAVTADRWMPMEEVALDEIASFMKGKKKE 1358 Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + S K K ++LG E G+ + G+I+++ Sbjct: 1359 GYTLIGLEQTDKSVKLDNSFQFPKKSLILLGTEAFGIPGTLLSELDLCLEIQQFGVIRSM 1418 Query: 264 NVSNAAAVALY 274 N+ A AV ++ Sbjct: 1419 NIQTATAVIVH 1429 >gi|154273571|ref|XP_001537637.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150415245|gb|EDN10598.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 114 Score = 52.1 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 9/49 (18%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSN 267 L+LG+E +GL+ ++ A + + + +LNVS Sbjct: 43 PCILMLGSEDQGLQKSVRQQADGVVVIPGAITSTGEEDRAGVDSLNVSV 91 >gi|209964300|ref|YP_002297215.1| RNA methyltransferase, TrmH family, group 1 [Rhodospirillum centenum SW] gi|209957766|gb|ACI98402.1| RNA methyltransferase, TrmH family, group 1 [Rhodospirillum centenum SW] Length = 266 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 21/58 (36%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ ++ G E GL + +M + + +LN++ A + Y Sbjct: 120 HAHVAAGRRVGILFGPERTGLVNDDIVLSDTMISVPLNPGFSSLNLAQAVLLVAYEWW 177 >gi|114327801|ref|YP_744958.1| rRNA methylase [Granulibacter bethesdensis CGDNIH1] gi|114315975|gb|ABI62035.1| RRNA methylase, SpoU family [Granulibacter bethesdensis CGDNIH1] Length = 257 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 19/50 (38%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K ++ G E GL A ++ + +LNVS A V Y Sbjct: 122 KTGILFGPERAGLDNDDMACADTLVRYPLNPDFMSLNVSQAVMVMGYEWW 171 >gi|332638007|ref|ZP_08416870.1| hypothetical protein WcibK1_04874 [Weissella cibaria KACC 11862] Length = 197 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 31/91 (34%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 +EH + D L + + L K A + G E GL Sbjct: 98 EHIEHRRVTDYQAVFDQLHADGYTIYAVDNTPGYQPQSLYNVTFPAKSAFLFGEERLGLA 157 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 A +M ++ G ++++NVS A + Sbjct: 158 DDLIAAADAMIYIPQYGSVRSINVSVAHGII 188 >gi|319407233|emb|CBI80872.1| RNA methyltransferase [Bartonella sp. 1-1C] Length = 273 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 19/58 (32%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 E K ++ G E GL A + + +LN++ A + Y Sbjct: 113 CYENIGHKTGILFGRERWGLENNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMK 170 >gi|88854933|ref|ZP_01129599.1| tRNA/rRNA methyltransferase [marine actinobacterium PHSC20C1] gi|88816094|gb|EAR25950.1| tRNA/rRNA methyltransferase [marine actinobacterium PHSC20C1] Length = 210 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 4/134 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 + +++ NIG+I+RSA AF D + R ++ + + H P + Sbjct: 61 RHPFHVAIENWQHDMNIGSIVRSANAFGADTVHIIGRRRWNKRGAMVTDRYQHVLHHPDV 120 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250 A + + S + + L+ G EG GL P+ E AT Sbjct: 121 AAFLEWTAANDLPIIAIDNVPGSVIIETFDI----PKRCVLLFGQEGPGLSPEAIEAATD 176 Query: 251 MAHLHMPGIIKALN 264 + + G +++N Sbjct: 177 VVEISQFGSTRSIN 190 >gi|260433569|ref|ZP_05787540.1| RNA methyltransferase, TrmH family, group 1 [Silicibacter lacuscaerulensis ITI-1157] gi|260417397|gb|EEX10656.1| RNA methyltransferase, TrmH family, group 1 [Silicibacter lacuscaerulensis ITI-1157] Length = 247 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 22/53 (41%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+A++ G E GL + A ++ + + +LN+ + Y Sbjct: 112 EKVAVLFGPERAGLENEDIAKANAIISVPVNPEYASLNLGQCVLLTAYEWMRQ 164 >gi|163746261|ref|ZP_02153619.1| RNA methyltransferase, TrmH family protein [Oceanibulbus indolifex HEL-45] gi|161380146|gb|EDQ04557.1| RNA methyltransferase, TrmH family protein [Oceanibulbus indolifex HEL-45] Length = 272 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 22/52 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++A++ G E GL + A ++ + + +LN++ + Y Sbjct: 137 QRVAVLFGPERAGLENEDIAQANAIVSVPVNPKFASLNLAQCVLLMSYEWMR 188 >gi|69249394|ref|ZP_00604959.1| RNA methyltransferase, TrmH family [Enterococcus faecium DO] gi|68194181|gb|EAN08711.1| RNA methyltransferase, TrmH family [Enterococcus faecium DO] Length = 190 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 24/186 (12%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M I K+ +I L K ++ + L G H + A Sbjct: 1 MKEIQSAKNPRIKEL-------------------KKLHKKKYREEKAEYLLEGFHLIEEA 41 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 + +I +L T+ + + V + + + LA+ T Sbjct: 42 -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQGILAVMTL- 99 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 + D S ++LD+V DP N+G ++R+A AF G++ K + S + +S Sbjct: 100 ---TSEDTPDFSGGWLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156 Query: 181 SGALEH 186 G+ H Sbjct: 157 QGSNYH 162 >gi|319405661|emb|CBI79284.1| RNA methyltransferase [Bartonella sp. AR 15-3] Length = 276 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 20/58 (34%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 E K ++ G E GL+ A + + +LN++ A + Y Sbjct: 113 YYENIGHKTGILFGRERWGLKNNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMK 170 >gi|170740850|ref|YP_001769505.1| RNA methyltransferase [Methylobacterium sp. 4-46] gi|168195124|gb|ACA17071.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium sp. 4-46] Length = 250 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 22/52 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +++ ++ G E GL A ++ + +LN++ + + Y + Sbjct: 112 ERVGILFGRERVGLSNDEVSLADAIVTFPVDPRHASLNLAQSVLLVAYEWRR 163 >gi|291287143|ref|YP_003503959.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM 12809] gi|290884303|gb|ADD68003.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM 12809] Length = 240 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 21/50 (42%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K+ L+ G E GL K L ++N++ A V+L+ + Sbjct: 107 KVGLLFGNEASGLNNKELSACAHRVSLPTSADYISMNLAQAVLVSLWQIK 156 >gi|269467901|gb|EEZ79640.1| rRNA methylase [uncultured SUP05 cluster bacterium] Length = 245 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 19/44 (43%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ G E GL + + + + +LNV++A V Y Sbjct: 119 VVFGTEKYGLTNEELDLCQILMTIPGNPNYFSLNVASAIQVFAY 162 >gi|268530568|ref|XP_002630410.1| C. briggsae CBR-EXOS-8 protein [Caenorhabditis briggsae] gi|187030474|emb|CAP30338.1| CBR-EXOS-8 protein [Caenorhabditis briggsae AF16] Length = 361 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 18/50 (36%) Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 +G E +G+ + G ++LNV AA+ + K Sbjct: 1 MGDEKEGVPVGLLRAVDQTVEIKQVGHTRSLNVHVTAALMIAKFAEQTNK 50 >gi|167380896|ref|XP_001735498.1| nucleolar phosphoprotein [Entamoeba dispar SAW760] gi|165902498|gb|EDR28302.1| nucleolar phosphoprotein, putative [Entamoeba dispar SAW760] Length = 350 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 23/61 (37%) Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + + + L+ G E GL + + + + + LN+S+A +A Sbjct: 186 MTMQEAGDMLSTMKGCLGLVFGNESNGLNTEECDACDLLNKIDIRSHYPVLNLSHAVGIA 245 Query: 273 L 273 L Sbjct: 246 L 246 >gi|327190529|gb|EGE57623.1| putative tRNA/rRNA methyltransferase protein [Rhizobium etli CNPAF512] Length = 276 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 18/50 (36%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ G E GL + A + + +LN++ A + Y Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|255605057|ref|XP_002538330.1| conserved hypothetical protein [Ricinus communis] gi|223512695|gb|EEF24052.1| conserved hypothetical protein [Ricinus communis] Length = 259 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 18/50 (36%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ G E GL + A + + +LN++ A + Y Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|222086156|ref|YP_002544688.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84] gi|221723604|gb|ACM26760.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84] Length = 280 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 18/50 (36%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ G E GL + A + + +LN++ A + Y Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|218682399|ref|ZP_03530000.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium etli CIAT 894] Length = 225 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 18/50 (36%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ G E GL + A + + +LN++ A + Y Sbjct: 70 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 119 >gi|218663166|ref|ZP_03519096.1| glutamate racemase [Rhizobium etli IE4771] Length = 450 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 18/50 (36%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ G E GL + A + + +LN++ A + Y Sbjct: 34 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 83 >gi|218508182|ref|ZP_03506060.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli Brasil 5] Length = 227 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 18/50 (36%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ G E GL + A + + +LN++ A + Y Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|190892001|ref|YP_001978543.1| tRNA/rRNA methyltransferase [Rhizobium etli CIAT 652] gi|190697280|gb|ACE91365.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CIAT 652] Length = 276 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 18/50 (36%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ G E GL + A + + +LN++ A + Y Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|209549544|ref|YP_002281461.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535300|gb|ACI55235.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 276 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 18/50 (36%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ G E GL + A + + +LN++ A + Y Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|241204881|ref|YP_002975977.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858771|gb|ACS56438.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 276 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 18/50 (36%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ G E GL + A + + +LN++ A + Y Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|116252374|ref|YP_768212.1| rRNA methylase family protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257022|emb|CAK08116.1| putative rRNA methylase family protein [Rhizobium leguminosarum bv. viciae 3841] Length = 276 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 18/50 (36%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ G E GL + A + + +LN++ A + Y Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|86357930|ref|YP_469822.1| tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42] gi|86282032|gb|ABC91095.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42] Length = 276 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 18/50 (36%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ G E GL + A + + +LN++ A + Y Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|296534805|ref|ZP_06897156.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957] gi|296264869|gb|EFH11143.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957] Length = 278 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 46/166 (27%), Gaps = 12/166 (7%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L + ++VL NIG+ R+ + +SGA Sbjct: 9 DLKPMPGESPIIVLVRPQLAENIGSTARAMANGGLFHLRLVAPRDGWPQERAWYVSSGAQ 68 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE------------QEIKNDKIALI 232 + + F T P+ + + + A++ Sbjct: 69 RILDAATVHETVADAVADCHRVFATCPRPRHVVIPVCTARGAAEELVDICQTRALRSAVL 128 Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 G E GL A ++ + +LN++ A + Y N Sbjct: 129 FGPERAGLENDDMACADTLVRYPLNPDHMSLNLAQAVMILAYEWWN 174 >gi|323955197|gb|EGB50970.1| RNA methyltransferase [Escherichia coli H263] Length = 228 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 18/53 (33%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 AL+ G E GL + A + + M + N+ A V Y Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSFNLGQAVMVYCYQLA 156 >gi|169630781|ref|YP_001704430.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium abscessus ATCC 19977] gi|169242748|emb|CAM63776.1| Probable tRNA/rRNA methyltransferase SpoU [Mycobacterium abscessus] Length = 153 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 5/137 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++ N G +R C+ + + SE+ V H Sbjct: 1 MFHILFHEPRIAPNTGNAIRMVAGTGCELHLVQPLFDLSEAKVRRAGLD---YHDMASVT 57 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 + + + ++ + L+ G E GL + T Sbjct: 58 VHENLSAAWKTLKPQRVYAFTAHASVTYTDIAYQPGDVLLFGPEPTGLDAEVLADPHITE 117 Query: 251 MAHLHMPGIIKALNVSN 267 + + ++LN+SN Sbjct: 118 KVRIPLLPGRRSLNLSN 134 >gi|302307217|ref|NP_983802.2| ADL294Cp [Ashbya gossypii ATCC 10895] gi|299788893|gb|AAS51626.2| ADL294Cp [Ashbya gossypii ATCC 10895] Length = 1372 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 K ++LG E +G+ + G+I+++N+ A AV ++ Sbjct: 1314 FHFPRKSLILLGTEAEGIPGYLLVELDMCLEIKQHGVIRSMNIQTATAVVVH 1365 >gi|194398548|ref|YP_002038556.1| rRNA/tRNA methylase [Streptococcus pneumoniae G54] gi|194358215|gb|ACF56663.1| rRNA/tRNA methylase [Streptococcus pneumoniae G54] Length = 130 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 22/82 (26%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K H K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLD 82 + I ++ A +N +L Sbjct: 40 VQAGVT-IEKIFALENYRDQLA 60 >gi|148554055|ref|YP_001261637.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas wittichii RW1] gi|148499245|gb|ABQ67499.1| tRNA/rRNA methyltransferase (SpoU) [Sphingomonas wittichii RW1] Length = 253 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 21/53 (39%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + A++ G E GL A ++ + + +LN++ A + Y Sbjct: 120 PGRSAILFGPERSGLETDDVAVARTIVTVPINPEFGSLNLAQAVILVAYEWSK 172 >gi|119960823|ref|YP_946361.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1] gi|119947682|gb|ABM06593.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens TC1] Length = 228 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 4/135 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + +++ NIG ++R+A AF + R + + + H P Sbjct: 75 KRHDFHIAIENWQHDLNIGTVVRTANAFLAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPT 134 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + G PLE L+ G EG GL P+ + A Sbjct: 135 VEDFVQWAEGEGLAVIGIDIFP----DSVPLETYDLPKNCVLVFGQEGPGLTPEVHDAAV 190 Query: 250 SMAHLHMPGIIKALN 264 + + G +++N Sbjct: 191 ATLSIEQFGSTRSMN 205 >gi|319898916|ref|YP_004159009.1| RNA methyltransferase [Bartonella clarridgeiae 73] gi|319402880|emb|CBI76431.1| RNA methyltransferase [Bartonella clarridgeiae 73] Length = 277 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 19/58 (32%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 E K ++ G E GL A + + +LN++ A + Y Sbjct: 113 YYENIGHKTGILFGRERWGLENNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMK 170 >gi|89054924|ref|YP_510375.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1] gi|88864473|gb|ABD55350.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1] Length = 258 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 21/53 (39%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 K+ ++ G E GL A ++ + + +LN++ + Y Q Sbjct: 119 GKVGVLFGPERAGLENADIAPADAIISVDVNPAFPSLNLAQCVLLCAYEWQRQ 171 >gi|254461267|ref|ZP_05074683.1| tRNA/rRNA methyltransferase [Rhodobacterales bacterium HTCC2083] gi|206677856|gb|EDZ42343.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium HTCC2083] Length = 247 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 24/53 (45%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+A++ G E G+ A ++ ++ + +LN++ + Y Q Sbjct: 112 EKVAVLFGPERAGMENDDIARANAVINVPVNSEFGSLNLAQCVLLIGYEWQRQ 164 >gi|158333940|ref|YP_001515112.1| RNA methyltransferase [Acaryochloris marina MBIC11017] gi|158304181|gb|ABW25798.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017] Length = 243 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 16/41 (39%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 +A + G E GL + + + +LN++ A Sbjct: 109 VAFVFGGERSGLNRHDIDCCDLITTIPQGNPYPSLNLAQAV 149 >gi|254230740|ref|ZP_04924067.1| hypothetical protein TBCG_00375 [Mycobacterium tuberculosis C] gi|124599799|gb|EAY58809.1| hypothetical protein TBCG_00375 [Mycobacterium tuberculosis C] Length = 246 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 18/46 (39%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 + L+ G EG G+ + A + G +++N AA Sbjct: 158 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAG 203 >gi|319404223|emb|CBI77816.1| RNA methyltransferase [Bartonella rochalimae ATCC BAA-1498] Length = 273 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 19/58 (32%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 E K ++ G E GL A + + +LN++ A + Y Sbjct: 113 YYENIGHKTGILFGRERWGLENNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMK 170 >gi|302840453|ref|XP_002951782.1| hypothetical protein VOLCADRAFT_117907 [Volvox carteri f. nagariensis] gi|300263030|gb|EFJ47233.1| hypothetical protein VOLCADRAFT_117907 [Volvox carteri f. nagariensis] Length = 463 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 20/51 (39%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +I ++ G E GL + A ++ + +LN+ A + Y Sbjct: 287 RIGVMFGREDNGLYNEELVRANAILTIDTDPSFYSLNLGQAVLIVCYELFR 337 >gi|37676836|ref|NP_937232.1| rRNA methylase [Vibrio vulnificus YJ016] gi|37201380|dbj|BAC97202.1| predicted rRNA methylase [Vibrio vulnificus YJ016] Length = 173 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +K + G E L + + A + ++ G +N++ V +Y Sbjct: 91 HFVHPEKAIYLFGPEDGSLPQEVVDKAHHVVYIPTHG---CMNLAATVNVVMYDR 142 >gi|332533398|ref|ZP_08409263.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas haloplanktis ANT/505] gi|332037107|gb|EGI73564.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas haloplanktis ANT/505] Length = 170 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + G E + + + ++ G +N++ V LY Sbjct: 91 FKHPENAFYVFGPEDGSVSKDVLKWCDEVVYIPTIG---CMNLAATCNVVLYDR 141 >gi|83313186|ref|YP_423450.1| rRNA methylase [Magnetospirillum magneticum AMB-1] gi|82948027|dbj|BAE52891.1| Predicted rRNA methylase [Magnetospirillum magneticum AMB-1] Length = 111 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 21/47 (44%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 ++ +++G E G+ P + A + + M ++LNV+ Sbjct: 40 HDRFPFAPGDTIMVGRESCGVPPDVVDRAEARIRIPMQVGARSLNVA 86 >gi|296284003|ref|ZP_06862001.1| rRNA methylase [Citromicrobium bathyomarinum JL354] Length = 223 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + A + G E GL + A ++ + + +LN++ A + Y Sbjct: 81 PGRSAFLFGPERSGLETEDVALARTILTVPIDPEFGSLNLAQAVILCAYEWSKR 134 >gi|46201064|ref|ZP_00055847.2| COG0219: Predicted rRNA methylase (SpoU class) [Magnetospirillum magnetotacticum MS-1] Length = 139 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 ++ +++G E G+ + + A + + M ++LNV+ Sbjct: 71 HDRFPFAPGDTIMVGRESCGVPTEVFDRAGARIRIPMRAGARSLNVA 117 >gi|317126367|ref|YP_004100479.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM 43043] gi|315590455|gb|ADU49752.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM 43043] Length = 234 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 4/135 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + +++ NIG+++R+A A + R + + H P Sbjct: 82 RRHDFHVAVENWGHDFNIGSVIRTANAMNAKAFHIVGRRRWNRRGAMVTDRYQHEHHHPD 141 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + G + S + L+ G EG GL + Sbjct: 142 AGSFAEWARSGGLAIVGIDNLPGSVPVETWD----LPRHCVLVFGQEGPGLSAAMRAECE 197 Query: 250 SMAHLHMPGIIKALN 264 + H+ G +++N Sbjct: 198 VVLHIEQFGSTRSIN 212 >gi|149187616|ref|ZP_01865913.1| rRNA methylase, putative [Vibrio shilonii AK1] gi|148838496|gb|EDL55436.1| rRNA methylase, putative [Vibrio shilonii AK1] Length = 173 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 D + G E L + + A + ++ G +N++ V LY Sbjct: 92 FNHPDNAVYVFGPEDGSLPQELVDKADHVVYVPTHG---CMNLAATVNVVLYDR 142 >gi|119718571|ref|YP_925536.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614] gi|119539232|gb|ABL83849.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614] Length = 219 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 1/135 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + +++ NIG I+R+ + + Sbjct: 55 RRHDFHVAIENWQHDFNIGTIVRT-ANAFLAAEVHIVGNRRWNRRGAMVTDRYQHVRHHP 113 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + LE ++ + G EG GL +E Sbjct: 114 TVEALAGYLHEHPGGPVALHGIDNLPGSAHLETTEVPRRVCFLFGQEGPGLSETAREACD 173 Query: 250 SMAHLHMPGIIKALN 264 + G +++N Sbjct: 174 GTFSIAQFGSTRSIN 188 >gi|27367045|ref|NP_762572.1| RRNA methylase [Vibrio vulnificus CMCP6] gi|27358613|gb|AAO07562.1| RRNA methylase, putative [Vibrio vulnificus CMCP6] Length = 173 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +K + G E L + + A + ++ G +N++ V +Y Sbjct: 91 HFAHPEKAIYLFGPEDGSLPQEVVDKAHHVVYIPTHG---CMNLAATVNVVMYDR 142 >gi|322830295|gb|EFZ33372.1| hypothetical protein TCSYLVIO_262 [Trypanosoma cruzi] Length = 392 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 3/72 (4%) Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + + Q + + + G E +R + S L G +LN Sbjct: 264 YRHPCLHALDGGARKRSQCTLPNLVFYLFGPEDGTIRQEVLARCHSAVFLPTQG---SLN 320 Query: 265 VSNAAAVALYIT 276 ++ A V LY Sbjct: 321 LAAAVNVVLYDR 332 >gi|145299949|ref|YP_001142790.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|142852721|gb|ABO91042.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 230 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +K+A++ G E GL + A +++L + +LN+ A + LY Sbjct: 105 NKVAIVFGCEESGLSNEQLAHADLLSYLPLKVSYPSLNLGQA--IMLYA 151 >gi|300932909|ref|ZP_07148165.1| putative rRNA methylase, SpoU class [Corynebacterium resistens DSM 45100] Length = 180 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 2/51 (3%) Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSN 267 L+ G E GL T + M +++N+SN Sbjct: 111 WFTDVAYQPGDVLLFGPEPTGLDEDVLNDPRVTEWVRIPMLPGRRSMNLSN 161 >gi|296101179|ref|YP_003611325.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055638|gb|ADF60376.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 228 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 22/72 (30%) Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 + E+ +K AL+ G E GL A + M +LN+ Sbjct: 85 FHYYATPAELVPMLSEKSQWLEKAALVFGREDSGLTNDELALADVLTGAPMVADYPSLNL 144 Query: 266 SNAAAVALYITQ 277 A V Y Sbjct: 145 GQAVMVYCYQLA 156 >gi|163793629|ref|ZP_02187604.1| adenylosuccinate lyase [alpha proteobacterium BAL199] gi|159181431|gb|EDP65946.1| adenylosuccinate lyase [alpha proteobacterium BAL199] Length = 264 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + L+ G E GL + A ++ + + +LN++ A + Y Sbjct: 119 LGQGVGLLFGPERAGLVNEDVTLADAVLSVPLNPGFSSLNLAQAVLLIGYEWYQ 172 >gi|241743103|ref|XP_002414182.1| rRNA methylase, putative [Ixodes scapularis] gi|215508036|gb|EEC17490.1| rRNA methylase, putative [Ixodes scapularis] Length = 156 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGI--IKALNVSNAA 269 + LI+G E +G+ P+ S+ + I +LNVS A Sbjct: 104 WVLPPTDKPAILIVGNENQGMHPELGAVCDSVLSISPAASSDLIGSLNVSVAT 156 >gi|170752133|ref|YP_001758393.1| RNA methyltransferase [Methylobacterium radiotolerans JCM 2831] gi|170658655|gb|ACB27710.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium radiotolerans JCM 2831] Length = 261 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + A++ G E GL A ++ + +LN++ A + Y Sbjct: 129 QRTAVMFGRERVGLTNDEVSLADAIVTFPVSPDFPSLNLAQAVLLVGY-AWRQ 180 >gi|220911435|ref|YP_002486744.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] gi|219858313|gb|ACL38655.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] Length = 229 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 4/135 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + +++ NIG ++R+A AF + R + + + H P Sbjct: 77 RRHNFHVAIENWQHDLNIGTVVRTANAFLAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPT 136 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + G PLE L+ G EG GL P+ E A Sbjct: 137 VEDFVQWAQGEGLAIIGIDIFP----DSVPLETYELPRDCVLVFGQEGPGLTPEVHEAAQ 192 Query: 250 SMAHLHMPGIIKALN 264 + + G +++N Sbjct: 193 ATLSIEQFGSTRSIN 207 >gi|320094713|ref|ZP_08026467.1| SpoU rRNA methylase [Actinomyces sp. oral taxon 178 str. F0338] gi|319978355|gb|EFW09944.1| SpoU rRNA methylase [Actinomyces sp. oral taxon 178 str. F0338] Length = 216 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 L+ G E GL ++ + G +++NV +AAA+A++ + Sbjct: 160 LPASACLLFGEESGGLSEGALAACAAVVAITQRGSTRSMNVGHAAAIAMWAWCSQ 214 >gi|163731767|ref|ZP_02139214.1| RNA methyltransferase, TrmH family protein [Roseobacter litoralis Och 149] gi|161395221|gb|EDQ19543.1| RNA methyltransferase, TrmH family protein [Roseobacter litoralis Och 149] Length = 251 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 23/52 (44%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +++A++ G E GL + A ++ + + +LN++ + Y Sbjct: 115 ERVAVLFGPERAGLENEDIARANAIISVPVNPDFPSLNLAQCVLLVGYEWMR 166 >gi|261331720|emb|CBH14714.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 586 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 3/162 (1%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 H + Q ++ S + + + G H + L+ + + W Sbjct: 130 ERHHLIQHFVKLRQNPKYRSSKQMMVVGGRHLLHELHKRGYTPRHLLV--REGQQKPKWA 187 Query: 85 ANLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 N + V D G + + P + + ++VLD+V+D Sbjct: 188 TNTGVKTEIIRVDRHVADVCSPGNDGFIGDFDIPKPPPKESLIANKQRFDRVLVLDNVDD 247 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 P +G +LR+A F D +I T + + ++A GA Sbjct: 248 PGLLGTVLRTAAGFHYDAVIATNHCADLYDHRVIRAARGAHF 289 >gi|152979660|ref|YP_001345289.1| tRNA/rRNA methyltransferase (SpoU) [Actinobacillus succinogenes 130Z] gi|150841383|gb|ABR75354.1| tRNA/rRNA methyltransferase (SpoU) [Actinobacillus succinogenes 130Z] Length = 361 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 97/278 (34%), Gaps = 11/278 (3%) Query: 3 LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 I++ + K+ + S ++ + + + ++ E + ++G + Sbjct: 82 QITETQLGKVKVVTKSTGGDIQTKKKKTGPLSPRAPEKIKKNRAEEMKVFGENACFTLFA 141 Query: 63 NPSRKIFQLLATKNALAR--LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 I ++ T + + + V + ++++ G E H G+ + Sbjct: 142 QRPASIIRVWTTVETAHKTGEMFSYLAANKKVYHVVDREELERVSGTE-HHGGICMLVKK 200 Query: 121 LLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 TL D R L++LD+V +P NIG ILR+ + +IT + + + Sbjct: 201 RHPFTLKGYLDITRKEDSLVLLDNVRNPQNIGGILRTCAVYGVKALITAEPELTQSANAM 260 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 + GA Q + + K + + ++ K +L +E Sbjct: 261 RVAEGGAEFVNILQINDTEQALAQLRQAGYQVIFTSTDKQAKSMNKLMRMKKAVFVL-SE 319 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273 + + + +L +K LNV+ A V L Sbjct: 320 SD-VS-GFAQNGDEVVNLSFANPLKTGLNVAVTAGVLL 355 >gi|2623830|gb|AAB86563.1| unknown [Schistosoma mansoni] Length = 119 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 4/74 (5%) Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKALN 264 + E N ++A+++G+E G+ P+ + I +LN Sbjct: 41 PHFSVNYIPSDYNSEEHNCRLAVVIGSEAHGVSPEAFHLVHLTGGSRLVIPSADRISSLN 100 Query: 265 VSNAAAVALYITQN 278 V + A+V L Q Sbjct: 101 VLSXASVLLGEIQR 114 >gi|320158924|ref|YP_004191302.1| RRNA methylase [Vibrio vulnificus MO6-24/O] gi|319934236|gb|ADV89099.1| RRNA methylase, putative [Vibrio vulnificus MO6-24/O] Length = 150 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +K + G E L + + A + ++ G +N++ V +Y Sbjct: 68 HFVHPEKAIYLFGPEDGSLPQEVVDKAHHVVYIPTHG---CMNLAATVNVVMYDR 119 >gi|291086095|ref|ZP_06354807.2| RNA methyltransferase, TrmH family, group 1 [Citrobacter youngae ATCC 29220] gi|291069358|gb|EFE07467.1| RNA methyltransferase, TrmH family, group 1 [Citrobacter youngae ATCC 29220] Length = 242 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 20/53 (37%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D AL+ G E GL + A + + M +LN+ A V Y Sbjct: 118 WMDHAALVFGREDSGLTNEELALADVLTGVTMVADYPSLNLGQAVMVYCYQLA 170 >gi|294656094|ref|XP_458335.2| DEHA2C14982p [Debaryomyces hansenii CBS767] gi|199430853|emb|CAG86415.2| DEHA2C14982p [Debaryomyces hansenii] Length = 426 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 8/61 (13%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLH-----MPGIIKALNVSNAAAVA---LY 274 + I LI+G+EG G+R + + + L I+ +LNVS A + + Sbjct: 366 MMAQSPILLIMGSEGAGVRTNLKLKSDYLVGLDKGRRLGVDIVDSLNVSVACGLLISKCF 425 Query: 275 I 275 Sbjct: 426 E 426 Score = 38.3 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 10/148 (6%) Query: 9 SEKIFSLKDSHYAKLR-----RNHRDYKKMQSFNQKSRHT---SQPENLFLYGVHTVSAA 60 ++K+ + + + R H ++ F P + ++YG V AA Sbjct: 79 NQKVDRQRRARKERKDADRQYRKHEKEERFSRFGGNRDFRQAFKNPLSEYVYGTFPVMAA 138 Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALET 118 L R F L T N L + + ++ VH G+ LET Sbjct: 139 LMANKRGSFNKLITHNPKESSGEIFKLAKRYGLRIDRKDSKNDLNVLSDNGVHNGIVLET 198 Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHN 146 PL P + + + V+ ++ Sbjct: 199 KPLELPIISTLGECDPELGTYKVSIVND 226 >gi|168700455|ref|ZP_02732732.1| tRNA/rRNA methyltransferase (SpoU) [Gemmata obscuriglobus UQM 2246] Length = 104 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + ++ H + + L + ++ +LGAE GL + E Sbjct: 14 FQYLTFDEFYAHLPHDCRLIGVEFPHEKAVSLPKFTHPERCVYLLGAEDYGLSKQALERC 73 Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273 + + + LNV+ A ++ + Sbjct: 74 HRVVYAPSQ---RCLNVAVAGSLIM 95 >gi|71745782|ref|XP_827521.1| hypothetical protein [Trypanosoma brucei TREU927] gi|70831686|gb|EAN77191.1| hypothetical protein, conserved [Trypanosoma brucei] Length = 586 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 3/162 (1%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84 H + Q ++ S + + + G H + L+ + + W Sbjct: 130 ERHHLIQHFVKLRQNPKYRSSKQMMVVGGRHLLHELHKRGYTPRHLLV--REGQQKPKWA 187 Query: 85 ANLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143 N + V D G + + P + + ++VLD+V+D Sbjct: 188 TNTGVKTEIIRVDRHVADVCSPGNDGFIGDFDIPKPPPKESLIANKQRFDRVLVLDNVDD 247 Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 P +G +LR+A F D +I T + + ++A GA Sbjct: 248 PGLLGTVLRTAAGFHYDAVIATNHCADLYDHRVIRAARGAHF 289 >gi|156978209|ref|YP_001449115.1| 23S rRNA methyltransferase [Vibrio harveyi ATCC BAA-1116] gi|156529803|gb|ABU74888.1| hypothetical protein VIBHAR_07014 [Vibrio harveyi ATCC BAA-1116] Length = 175 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + I G E L + + A + ++ G +N++ V LY Sbjct: 92 FAHPENAVYIFGPEDGSLPQEVVDKADHVVYVPTNG---CMNLAATVNVVLYDR 142 >gi|332185344|ref|ZP_08387092.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17] gi|332014322|gb|EGI56379.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17] Length = 243 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 19/52 (36%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + A + G E GL A + + + +LN++ A + Y Sbjct: 111 GRAAFLFGPERSGLETDDVAIARKIVTVPINPEFGSLNLAQAVILIAYEWSK 162 >gi|163842120|ref|YP_001626525.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209] gi|162955596|gb|ABY25111.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209] Length = 221 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 4/135 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + + +++ NIG+++R A AF + R + + + H P Sbjct: 69 RRHEFHVAIENWQHDLNIGSVVRCANAFLAQEVHIIGRRRWNRRGAMVTDKYQHVRHHPT 128 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + G PLE K L+ G EG GL E A Sbjct: 129 VEDFVAWAEAEDVAVIGIDNF----PDSVPLETYDLPRKCVLVFGQEGPGLTDAVHEKAE 184 Query: 250 SMAHLHMPGIIKALN 264 + + G +++N Sbjct: 185 ATLSIAQFGSTRSIN 199 >gi|70928608|ref|XP_736490.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56511067|emb|CAH76189.1| hypothetical protein PC000335.01.0 [Plasmodium chabaudi chabaudi] Length = 110 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 16/73 (21%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHL----------HMPGI------IKALNVS 266 KN+K+ +ILG E KGL + + + ++ + +LNV+ Sbjct: 36 INKNEKVMIILGNESKGLNEDIIKNSDNCIYINNLFDEKNIQPNLKNANDNLIVNSLNVN 95 Query: 267 NAAAVALYITQNH 279 NA ++ L+ ++ Sbjct: 96 NACSIILHHLHSN 108 >gi|315123535|ref|YP_004065541.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas sp. SM9913] gi|315017295|gb|ADT70632.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas sp. SM9913] Length = 171 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + G E + + + ++ G +N++ V LY Sbjct: 91 FTHPENAFYVFGPEDGSVPKDVLKWCDEVVYIPTIG---CMNLAATCNVVLYDR 141 >gi|83952097|ref|ZP_00960829.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius nubinhibens ISM] gi|83837103|gb|EAP76400.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius nubinhibens ISM] Length = 231 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 23/53 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +++A++ G E GL A ++ ++ + +LN++ + Y Sbjct: 96 ERVAVLFGPERAGLENDDVARANAIINVPVNPQFASLNLAQCVLLVGYEWMRQ 148 >gi|148298853|ref|NP_001091770.1| putative RNA methyltransferase [Bombyx mori] gi|110333471|gb|ABG67686.1| putative RNA methyltransferase [Bombyx mori] Length = 122 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 4/54 (7%) Query: 231 LILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 LI+G E +G+ + + A+ ++ + + +LN A AV + F Sbjct: 51 LIIGGETEGISEDSYKFASSRNGLRLNIPLIEGVDSLNTGMATAVIACEIKKQF 104 >gi|326576005|gb|EGE25928.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis CO72] gi|326576417|gb|EGE26326.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis O35E] Length = 294 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 20/46 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 KIA++ G E +GL + A + LNV++A V Sbjct: 140 PKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQVI 185 >gi|326569633|gb|EGE19685.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1] Length = 294 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 20/46 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 KIA++ G E +GL + A + LNV++A V Sbjct: 140 PKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQVI 185 >gi|326566609|gb|EGE16752.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 12P80B1] Length = 235 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 20/46 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 KIA++ G E +GL + A + LNV++A V Sbjct: 81 PKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQVI 126 >gi|326560770|gb|EGE11137.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 103P14B1] gi|326574402|gb|EGE24344.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 101P30B1] Length = 294 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 20/46 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 KIA++ G E +GL + A + LNV++A V Sbjct: 140 PKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQVI 185 >gi|326559881|gb|EGE10281.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 7169] Length = 294 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 20/46 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 KIA++ G E +GL + A + LNV++A V Sbjct: 140 PKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQVI 185 >gi|326559242|gb|EGE09673.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 46P47B1] Length = 294 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 20/46 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 KIA++ G E +GL + A + LNV++A V Sbjct: 140 PKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQVI 185 >gi|296113398|ref|YP_003627336.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4] gi|295921092|gb|ADG61443.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4] gi|326570114|gb|EGE20159.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8] Length = 294 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 20/46 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 KIA++ G E +GL + A + LNV++A V Sbjct: 140 PKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQVI 185 >gi|289803388|ref|ZP_06534017.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 88 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 10/23 (43%), Positives = 16/23 (69%) Query: 258 GIIKALNVSNAAAVALYITQNHF 280 G++++LNVS A+A+ LY Q Sbjct: 2 GMVQSLNVSVASALILYEAQRQR 24 >gi|254453515|ref|ZP_05066952.1| tRNA/rRNA methyltransferase [Octadecabacter antarcticus 238] gi|198267921|gb|EDY92191.1| tRNA/rRNA methyltransferase [Octadecabacter antarcticus 238] Length = 245 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 23/52 (44%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K+A++ G E G+ A ++ + + +LN++ + Y + Sbjct: 112 EKVAVMFGPERSGMENADIAHANAIITVPVNPEFPSLNLAQCVLLVGYEWRR 163 >gi|119386406|ref|YP_917461.1| RNA methyltransferase [Paracoccus denitrificans PD1222] gi|119377001|gb|ABL71765.1| RNA methyltransferase, TrmH family, group 1 [Paracoccus denitrificans PD1222] Length = 246 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++A+I G E GL + A ++ + + +LN++ A + Y Sbjct: 112 GRVAVIFGPERAGLENEDVARANAIITVPVNPDFPSLNLAQAVLLTGYEWAQ 163 >gi|71416815|ref|XP_810386.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70874908|gb|EAN88535.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 532 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 10/64 (15%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATS----------MAHLHMPGIIKALNVSNAAAVA 272 + +++G E G+ K + + ++ G I +LNV + +A Sbjct: 155 CRLSSPARIVVGHENNGVSRKYIDKMDESGRKGCRAERVVYVPQYGTISSLNVVTSMGIA 214 Query: 273 LYIT 276 L+ Sbjct: 215 LFYA 218 >gi|197335061|ref|YP_002155413.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11] gi|197316551|gb|ACH65998.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11] Length = 171 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 Q DK + G E + + + A + ++ G +N++ V LY Sbjct: 90 QFQHPDKAIYVFGPEDGSITQQVADRADHVVYIPTVG---CMNLAATVNVLLYDR 141 >gi|114766189|ref|ZP_01445189.1| RNA methyltransferase, TrmH family, group 1 [Pelagibaca bermudensis HTCC2601] gi|114541560|gb|EAU44603.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. HTCC2601] Length = 247 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 22/52 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++A++ G E GL A ++ + + +LN++ + Y + Sbjct: 112 GRVAVMFGPERAGLENADVAQANAIISVPVNPEFPSLNLAQCVLLCGYEWRR 163 >gi|254362652|ref|ZP_04978739.1| RNA methyltransferase [Mannheimia haemolytica PHL213] gi|153094271|gb|EDN75135.1| RNA methyltransferase [Mannheimia haemolytica PHL213] Length = 344 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 87/259 (33%), Gaps = 16/259 (6%) Query: 27 HRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81 + K+ ++ R + E + +YG + + I +L AT +L Sbjct: 81 NSSVKEKKNGPLSPRAPEKIKKNRLEEMKVYGENACISLFQQRPESIVRLWATVEGAKKL 140 Query: 82 DWD--ANLPHPFPVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQLLM 136 H + + ++++ G E + +L L + L+ Sbjct: 141 GDLMSYLAQHKKAYHVIDREEMERVTGTEHHGDMCLLVKKTASFVLEGYLQVPKKQDCLV 200 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +LD VN+ N+G I+R+ + GIIT S + SA + G + Sbjct: 201 LLDGVNNAQNVGGIIRTCAFYGVKGIITENVDSLNSSAAARVAEGGLEFVRALETKNKHI 260 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLH 255 +Q + L + +K+ +L +E + A + L Sbjct: 261 ALVQLRQAGYQIVHLTRHKQAPSLTKIKLAEKVVFVL-SE---IPASDVAYAEDTTIQLS 316 Query: 256 MPGIIKA-LNVSNAAAVAL 273 + + LNV+ A + L Sbjct: 317 FNNPLNSGLNVAVNAGILL 335 >gi|144900197|emb|CAM77061.1| rRNA methylase [Magnetospirillum gryphiswaldense MSR-1] Length = 244 Score = 50.2 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 19/52 (36%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K ++ G E GL A ++ + + +LN++ + Y Sbjct: 100 QKFGVMFGPERTGLENDDVALADTVVTVPLNPDYSSLNLAQCVLLVAYEWYQ 151 >gi|256824436|ref|YP_003148396.1| rRNA methylase [Kytococcus sedentarius DSM 20547] gi|256687829|gb|ACV05631.1| rRNA methylase [Kytococcus sedentarius DSM 20547] Length = 235 Score = 50.2 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 20/42 (47%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + ++ G EG GL P+ ++ H+ G +++N Sbjct: 172 YMLPAECVMVFGQEGPGLTPEVVARCEAVLHIEQFGSTRSIN 213 >gi|260427916|ref|ZP_05781895.1| RNA methyltransferase, TrmH family [Citreicella sp. SE45] gi|260422408|gb|EEX15659.1| RNA methyltransferase, TrmH family [Citreicella sp. SE45] Length = 247 Score = 50.2 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 22/52 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++A++ G E GL A ++ + + +LN++ + Y + Sbjct: 112 GRVAVMFGPERAGLENADVAQANAIISVPVNPEFPSLNLAQCVLLCGYEWRR 163 >gi|322826123|gb|EFZ30881.1| hypothetical protein TCSYLVIO_2824 [Trypanosoma cruzi] Length = 383 Score = 50.2 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Query: 231 LILGAEGKGLRPKTQETA--TSMAHLHMPGI-IKALNVSNAAAVALYITQ 277 L+LG+E KGLR E + +P I ++NVS A +V L+ + Sbjct: 296 LVLGSESKGLRGLEGEWTVPYRAVSIPLPNSFIDSINVSVAGSVLLHAFR 345 >gi|84516146|ref|ZP_01003506.1| RNA methyltransferase, TrmH family, group 1 [Loktanella vestfoldensis SKA53] gi|84509842|gb|EAQ06299.1| RNA methyltransferase, TrmH family, group 1 [Loktanella vestfoldensis SKA53] Length = 246 Score = 50.2 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 22/52 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K+A++ G E G+ A ++ + + +LN++ + Y + Sbjct: 112 GKVAVMFGPERAGMENDDIARANAIISVPVNPDFPSLNLAQCVLLLGYEWRR 163 >gi|71664714|ref|XP_819335.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70884631|gb|EAN97484.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 383 Score = 50.2 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Query: 231 LILGAEGKGLRPKTQETA--TSMAHLHMPGI-IKALNVSNAAAVALYITQ 277 L+LG+E KGLR E + +P I ++NVS A +V L+ + Sbjct: 296 LVLGSESKGLRGLEGEWTVPYRAVSIPLPNSFIDSINVSVAGSVLLHAFR 345 >gi|160946736|ref|ZP_02093939.1| hypothetical protein PEPMIC_00694 [Parvimonas micra ATCC 33270] gi|158447120|gb|EDP24115.1| hypothetical protein PEPMIC_00694 [Parvimonas micra ATCC 33270] Length = 234 Score = 50.2 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 60/218 (27%), Gaps = 12/218 (5%) Query: 58 SAALNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116 L + + K +L + + + G+ Sbjct: 22 IELLQSKNYKTISVLVHSKYDDKAGLEKICDEKGINLIYNDKIVNKLQSKENTFVIGVFE 81 Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176 + + ++L D N+G ILR+A+ F I + Sbjct: 82 KNFAKIKKDNH--------ILLCEPRDKGNLGTILRTALGFGFKNIAIIDGCDVFD--PK 131 Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 AS + I + + + + L+ L+ G E Sbjct: 132 TVRASMGAIFKMNVEIFKTFEEYKNTFEENNIYSFILNKGSVSLKNVEIKKPFTLMFGNE 191 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL + T+ + I + N+ A+++A+Y Sbjct: 192 SHGLENFDLK-GTTPVFIEQSEDIDSFNLPIASSIAMY 228 >gi|322505046|emb|CBZ14721.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 465 Score = 50.2 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 57/171 (33%), Gaps = 5/171 (2%) Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171 + + ++ V++ + N ++LR A+ F + + Sbjct: 14 FDAWGYHIHWPQNEILSPLTGKVNFVVEDIKFASNAWSLLRLAMFFGVKHPKVLSNMTKT 73 Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA- 230 ++ ++ L + +NL K+ + + + + Sbjct: 74 TPSMDIMRSANRLFFMHSRVNANLNKTKVKIALTPTHPCAFPVQELAWNKHRHFSGRQSA 133 Query: 231 ---LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+LG E GL K E ++ G I +L++ +A A+A + T Sbjct: 134 GVELVLGME-NGLSQKVVEECDLCMYIPQYGSIGSLSMISALAIAAHSTWR 183 >gi|311744568|ref|ZP_07718368.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272] gi|311312187|gb|EFQ82104.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272] Length = 209 Score = 50.2 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 17/40 (42%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L+ G EG GL P+ + S + G +++N Sbjct: 148 LPRSCVLVFGQEGPGLSPEARRLCRSTLSIAQYGSTRSIN 187 >gi|322515005|ref|ZP_08068015.1| SpoU protein [Actinobacillus ureae ATCC 25976] gi|322118994|gb|EFX91166.1| SpoU protein [Actinobacillus ureae ATCC 25976] Length = 365 Score = 50.2 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 84/259 (32%), Gaps = 16/259 (6%) Query: 27 HRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81 + K+ ++ R + E + +YG + A I +L AT +L Sbjct: 102 NSTIKEKKTGLLSHRAPEKIKKNRAEEMKVYGENACLALFKQRPDAIVRLWATVEGAKKL 161 Query: 82 DWDANLPHPFP--VKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQLLM 136 + + V ++++ G E L L R L+ Sbjct: 162 GDMLSYLAEYKKAYHVVDRAEMERVTGTEHHGDVCLLVKKAVPFSLEGYLQVPRKRDCLV 221 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +LD VN+ N+G I+R+ + G+I + + SA + G P Sbjct: 222 LLDAVNNAQNVGGIIRTCAFYGVSGVIVESADTLNSSAAARVAEGGLEFVRPLETKHKQI 281 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLH 255 Q ++ + L + +K IL + + E + L Sbjct: 282 ALTQLRNAGYQIVHLTRNKQATSLAKTKLAEKTVFILSD----VPAQDIEYPEDTTVQLS 337 Query: 256 MPGIIKA-LNVSNAAAVAL 273 + + LNV+ +A + L Sbjct: 338 FENPLNSGLNVAVSAGIVL 356 >gi|255075243|ref|XP_002501296.1| predicted protein [Micromonas sp. RCC299] gi|226516560|gb|ACO62554.1| predicted protein [Micromonas sp. RCC299] Length = 467 Score = 50.2 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 16/67 (23%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHL----------------HMPGIIKALNVSNAAAV 271 K+A++ G E GL A + +LN+S A V Sbjct: 207 KVAVVFGNEATGLTNDELARANLGVMIATSAATSSPASSRKRYTGAKGATSLNLSMAVGV 266 Query: 272 ALYITQN 278 Y Sbjct: 267 VAYELFQ 273 >gi|114332105|ref|YP_748327.1| RNA methyltransferase [Nitrosomonas eutropha C91] gi|114309119|gb|ABI60362.1| RNA methyltransferase, TrmH family, group 2 [Nitrosomonas eutropha C91] Length = 154 Score = 50.2 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 40/157 (25%), Gaps = 20/157 (12%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L ++L P N G I+R S + L ++ E Sbjct: 1 MLQVILHQPEIPPNTGNIIRLCANTSTQLHLIKPLGFNLSDRQLKRAGLDYHEWARLTVH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 +L L M + + K ++ + G+E GL + E Sbjct: 61 EDLASCLSLMDGCRIFAVTTKA--TKHYDKVDYTTDDVFLFGSETCGLPVEVLEDFSQDR 118 Query: 251 MAHLHMPGIIKALNVSNA--------AAVALYITQNH 279 + M AAV +Y Sbjct: 119 RIRIPMVPSS--------RSLNLSNSAAVIIYEAWRQ 147 >gi|315122619|ref|YP_004063108.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496021|gb|ADR52620.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 303 Score = 50.2 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 20/51 (39%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + LI G E GL + + ++ + +LN++ A V + Sbjct: 153 QNVGLIFGCERSGLTNEEIALSNAIISFPVNPNFSSLNIAQAVLVMAWEWM 203 >gi|209694342|ref|YP_002262270.1| rRNA methylase (SpoU_methylase) [Aliivibrio salmonicida LFI1238] gi|208008293|emb|CAQ78439.1| rRNA methylase (SpoU_methylase) [Aliivibrio salmonicida LFI1238] Length = 171 Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 DK + G E + + + A + ++ G +N++ V LY Sbjct: 91 FKHPDKAIYVFGPEDGSITQQVADRADHVVYIPTVG---CMNLAATVNVLLYDR 141 >gi|261856767|ref|YP_003264050.1| RNA methyltransferase, TrmH family, group 1 [Halothiobacillus neapolitanus c2] gi|261837236|gb|ACX97003.1| RNA methyltransferase, TrmH family, group 1 [Halothiobacillus neapolitanus c2] Length = 271 Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 18/47 (38%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ GAE GL + A + + LN+ A + Y + Sbjct: 126 IVFGAERTGLTNQEISWAQRIIEIPANPDYPVLNLGQAVQIVAYEWR 172 >gi|126729831|ref|ZP_01745644.1| RNA methyltransferase, TrmH family, group 1 [Sagittula stellata E-37] gi|126709950|gb|EBA09003.1| RNA methyltransferase, TrmH family, group 1 [Sagittula stellata E-37] Length = 249 Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 23/52 (44%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++A++ G E GL + A ++ + + +LN++ + Y Q Sbjct: 112 QRVAVMFGPERAGLENEDVAQANAIVTVPVNPEFYSLNLAQCVLLMSYEWQR 163 >gi|301168147|emb|CBW27735.1| putative rRNA methylase [Bacteriovorax marinus SJ] Length = 164 Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 55/160 (34%), Gaps = 4/160 (2%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L ++ +VL+ P N G+I R+ A + + I+ + ++ Sbjct: 4 NLSLMQKPLFKIVLNAPEIPGNTGSIGRTCAALNLELILIHPLGFDISEKAVRRAGLDYW 63 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + I + L+ + + +++ + + + LI G+E GL Sbjct: 64 DSIKISEYRDFDHFLESEKPKEEELFFFTKSAEETIFETTITEGSYLIFGSESVGLPKDL 123 Query: 245 QET-ATSMAHLHMPGI-IKALNV-SNAAAVALYITQNHFA 281 + + I++LN+ S A + A + Sbjct: 124 LAKFSNRQVCFPILNKEIRSLNLASIATS-AAFEGIRQLK 162 >gi|145589038|ref|YP_001155635.1| RNA methyltransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047444|gb|ABP34071.1| RNA methyltransferase, TrmH family, group 1 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 250 Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++A++ G E GL + T L+ +LN++ A V Y + Sbjct: 114 QGQVAMVFGTERTGLENEHLALCTHRVWLNANPDYPSLNLAQALMVCAYALR 165 >gi|218671146|ref|ZP_03520817.1| rRNA methylase protein [Rhizobium etli GR56] Length = 153 Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 6/101 (5%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K +++ K + + G+ V A+ I L+ K A + + Sbjct: 24 NPIIKDIKALTNK-KSREESGTFLAEGLKLVIDAIELGWT-IRTLVYAKAAKGKPLVEQM 81 Query: 87 LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 V V + I I ++ + + Sbjct: 82 AAKTVASGGLVLEVSEKVIGSITRRDNPQMVVGIFDQRWKP 122 >gi|159473264|ref|XP_001694759.1| predicted protein [Chlamydomonas reinhardtii] gi|158276571|gb|EDP02343.1| predicted protein [Chlamydomonas reinhardtii] Length = 324 Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 20/50 (40%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 L+ G E GL + + + + ++N+S+A A L + Sbjct: 152 LVFGREESGLTEAELRLCSYASAIPTGRVQPSMNLSHAVAAVLAELFSRR 201 >gi|117621440|ref|YP_857524.1| putative RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562847|gb|ABK39795.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 230 Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 DK+A++ G E GL + +++L + +LN+ A + LY Sbjct: 105 DKVAIVFGCEESGLSNEQLAQVDLISYLPLKVSYPSLNLGQA--IMLYA 151 >gi|319784058|ref|YP_004143534.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169946|gb|ADV13484.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 304 Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 19/52 (36%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ G E GL A + + +LN++ AA + Y Sbjct: 119 QRTGILFGRERFGLYNDEVGLADEIVTFPVDPDFSSLNIAQAALLMSYEWMK 170 >gi|260460844|ref|ZP_05809094.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium opportunistum WSM2075] gi|259033421|gb|EEW34682.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium opportunistum WSM2075] Length = 306 Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 19/52 (36%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ G E GL A + + +LN++ AA + Y Sbjct: 119 QRTGILFGRERFGLYNDEVGLADEIVTFPVDPDFSSLNIAQAALLMSYEWMK 170 >gi|13470359|ref|NP_101925.1| RNA methyltransferase [Mesorhizobium loti MAFF303099] gi|14021098|dbj|BAB47711.1| RNA methyltransferase [Mesorhizobium loti MAFF303099] Length = 303 Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 19/52 (36%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ G E GL A + + +LN++ AA + Y Sbjct: 117 QRTGILFGRERFGLYNDEVGLADEIVTFPVDPDFSSLNIAQAALLMSYEWMK 168 >gi|322816532|gb|EFZ24804.1| hypothetical protein TCSYLVIO_9048 [Trypanosoma cruzi] Length = 469 Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++LG E GL ++ G I +L++ +A A+AL+ Sbjct: 143 IVLGME-NGLSENVVSQCDYCLYIPQYGSIGSLSMISAMAIALHSAA 188 >gi|119470949|ref|ZP_01613533.1| putative cold-shock RNA methyltransferase [Alteromonadales bacterium TW-7] gi|119445971|gb|EAW27251.1| putative cold-shock RNA methyltransferase [Alteromonadales bacterium TW-7] Length = 172 Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 3/58 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 + +LG E + + + ++ G +N++ V LY + Sbjct: 91 FKHPENAFYVLGPEDGSVPKDVLKWCDEVVYIPTIG---CMNLAATCNVVLYDRLSKL 145 >gi|71654167|ref|XP_815708.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70880783|gb|EAN93857.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 469 Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++LG E GL ++ G I +L++ +A A+AL+ Sbjct: 143 IVLGME-NGLSENVVSQCDYCLYIPQYGSIGSLSMISAMAIALHSAA 188 >gi|332006235|gb|AED93618.1| protein agamous-like 26 [Arabidopsis thaliana] Length = 368 Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 9/143 (6%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P N G I R+ A + + + A + ++ + S Sbjct: 82 LHVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDARVKRAGLDYWPFVVVKAHS 141 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETATS- 250 + + + + ++ + + + L+ G+E GL P+ Sbjct: 142 SWAEFQEYFRLQEGEKRMIAFTKRGTRIHSDFSYRSGDYLLFGSETSGLPPEALSDCNHE 201 Query: 251 -----MAHLHMPGI-IKALNVSN 267 + M ++ LN+S Sbjct: 202 PYGGGTLRIPMVETYVRCLNLSI 224 >gi|308808149|ref|XP_003081385.1| SpoU rRNA methylase family protein (ISS) [Ostreococcus tauri] gi|116059847|emb|CAL55554.1| SpoU rRNA methylase family protein (ISS) [Ostreococcus tauri] Length = 666 Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 21/71 (29%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK---------------------ALNV 265 ++A++ G E GL E A + + +LN+ Sbjct: 160 GRVAVLFGTEKSGLSNDEMEHAQFAVCVPTAANVNARGFTKYTGGASGGETDTSSMSLNL 219 Query: 266 SNAAAVALYIT 276 A + Y Sbjct: 220 GMAVGIVAYEL 230 >gi|90420931|ref|ZP_01228836.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1] gi|90334906|gb|EAS48678.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1] Length = 311 Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 19/47 (40%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ G E GL + A + + +LN++ A + Y + Sbjct: 147 ILFGRERFGLSNEEVGLADEIVTFPVDPDFASLNIAQAVLLVSYAWR 193 >gi|85373954|ref|YP_458016.1| rRNA methylase [Erythrobacter litoralis HTCC2594] gi|84787037|gb|ABC63219.1| rRNA methylase [Erythrobacter litoralis HTCC2594] Length = 384 Score = 49.8 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K A++ G E GL + A ++ + + +LN++ A + Y Sbjct: 240 GKSAVLFGPERSGLETEDVALARAILTVPIDPEFGSLNLAQAVILCAYEWSK 291 >gi|87121417|ref|ZP_01077306.1| 23S rRNA methyltransferase [Marinomonas sp. MED121] gi|86163260|gb|EAQ64536.1| 23S rRNA methyltransferase [Marinomonas sp. MED121] Length = 175 Score = 49.8 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +K I G E + + A + + G +N++ + V LY Sbjct: 96 FKHPEKAIYIFGPEDNTISQAVIDKADHVVFVPTVG---CMNLAASVNVLLYDR 146 >gi|319408555|emb|CBI82208.1| RNA methyltransferase [Bartonella schoenbuchensis R1] Length = 279 Score = 49.8 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 20/52 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 KI ++ G E GL+ A + + +LN++ A + Y Sbjct: 119 HKIGILFGRERWGLKNDEISFADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|49475602|ref|YP_033643.1| RNA methyltransferase [Bartonella henselae str. Houston-1] gi|49238409|emb|CAF27636.1| RNA methyltransferase [Bartonella henselae str. Houston-1] Length = 278 Score = 49.8 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 17/53 (32%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ G E GL + + +LN++ A + Y Sbjct: 118 KQRTGIVFGRERWGLENDEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|218960366|ref|YP_001740141.1| putative tRNA/rRNA methyltransferase (yfhQ) [Candidatus Cloacamonas acidaminovorans] gi|167729023|emb|CAO79934.1| putative tRNA/rRNA methyltransferase (yfhQ) [Candidatus Cloacamonas acidaminovorans] Length = 278 Score = 49.8 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 22/62 (35%) Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + + I L+ G E GL E H +LN++ A A+AL+ Sbjct: 98 QMAKYVHSLPDSNIGLVFGRETYGLTDSEAELCPLRCHFMANPSFPSLNLAQAVALALWE 157 Query: 276 TQ 277 Sbjct: 158 IY 159 >gi|71415298|ref|XP_809720.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70874146|gb|EAN87869.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 469 Score = 49.8 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++LG E GL ++ G I +L++ +A A+AL+ Sbjct: 143 IVLGME-NGLSENVVSQCDYCLYIPQYGSIGSLSMISAMAIALHSAA 188 >gi|332993001|gb|AEF03056.1| putative cold-shock RNA methyltransferase [Alteromonas sp. SN2] Length = 136 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + I G E L E + ++ +N++ A V LY Sbjct: 58 FKHPENAMYIFGPEDGSLDKSVLEWCDHVVYIPTY---SCMNLAATANVVLYDR 108 >gi|294677143|ref|YP_003577758.1| tRNA/rRNA methyltransferase, SpoU family [Rhodobacter capsulatus SB 1003] gi|294475963|gb|ADE85351.1| tRNA/rRNA methyltransferase, SpoU family [Rhodobacter capsulatus SB 1003] Length = 245 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 21/53 (39%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ ++ G E GL A ++ + + +LN++ A + Y Sbjct: 112 QRVGVMFGPERTGLENDDIIRANAIITVPVNPEFFSLNLAQAVLLTAYEFARQ 164 >gi|116669083|ref|YP_830016.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] gi|116609192|gb|ABK01916.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] Length = 224 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 4/135 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + + +++ NIG ++R+A AF + R + + + H P Sbjct: 72 KRHDFHIAIENWQHDLNIGTVVRTANAFLAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPT 131 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + G PLE L+ G EG GL P+ E A Sbjct: 132 VEDFVAWAQGEGLAIIGIDIFP----DSVPLETYDLPKNCVLVFGQEGPGLTPEVHEAAV 187 Query: 250 SMAHLHMPGIIKALN 264 + G +++N Sbjct: 188 DTLSIEQFGSTRSIN 202 >gi|149914927|ref|ZP_01903456.1| RNA methyltransferase TrmH, group 1 [Roseobacter sp. AzwK-3b] gi|149811115|gb|EDM70952.1| RNA methyltransferase TrmH, group 1 [Roseobacter sp. AzwK-3b] Length = 248 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 25/52 (48%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +++A++ G E GL + A ++ ++ + +LN++ + Y + Sbjct: 112 ERVAVLFGPERAGLENEDIAKANAIINVPVNPDFPSLNLAQCVLLTGYEWRR 163 >gi|172040099|ref|YP_001799813.1| putative rRNA methylase, SpoU class [Corynebacterium urealyticum DSM 7109] gi|171851403|emb|CAQ04379.1| putative rRNA methylase, SpoU class [Corynebacterium urealyticum DSM 7109] Length = 195 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSN 267 ++ +K L+ G E GL +T T+ + M +++N+SN Sbjct: 119 FTTHAKTWFTDVDFRRGDVLLFGPEPTGLDEETLADPRITAQLRIPMLPARRSMNLSN 176 >gi|309806142|ref|ZP_07700161.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 03V1-b] gi|308167497|gb|EFO69657.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 03V1-b] Length = 115 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 36/101 (35%), Gaps = 3/101 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K+++ QK ++ + + G H V AL+ +K ++ T+ + +L Sbjct: 10 NNSIIKQIRKLKQK-KYRKDQMSYLIEGFHLVKEALD-MEQKYEYVIGTQETINKLKLTN 67 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126 + + V D++ E + L Sbjct: 68 KIFDK-SIILVNQAICDQLSDTENSQDIFMVLPINQPHSFL 107 >gi|159468668|ref|XP_001692496.1| predicted protein [Chlamydomonas reinhardtii] gi|158278209|gb|EDP03974.1| predicted protein [Chlamydomonas reinhardtii] Length = 154 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 19/51 (37%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +I ++ G E GL A ++ + +LN+ A + Y Sbjct: 94 RIGVMFGREDNGLYNDELVRANAILTIDTDPNFYSLNLGQAVLITCYELFR 144 >gi|240850641|ref|YP_002972041.1| RNA methyltransferase, SpoU related [Bartonella grahamii as4aup] gi|240267764|gb|ACS51352.1| RNA methyltransferase, SpoU related [Bartonella grahamii as4aup] Length = 276 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 17/52 (32%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K ++ G E GL + + +LN++ A + Y Sbjct: 119 HKTGIVFGRERWGLENDEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|149204047|ref|ZP_01881015.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. TM1035] gi|149142489|gb|EDM30534.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. TM1035] Length = 247 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K+A++ G E GL A ++ ++ + +LN+ + Y Q Sbjct: 112 EKVAVLFGPERAGLENDDIARANAIINVPVNPEFASLNLGQCVLLMAYEWQR 163 >gi|84497635|ref|ZP_00996457.1| tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649] gi|84382523|gb|EAP98405.1| tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649] Length = 213 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 5/159 (3%) Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 + V G + LD R + +++ NIG+++R+A A Sbjct: 37 DRRNVVDGYRYWRHDAIVADLDT-RRHDFHIAIENWEHDFNIGSVVRTANAMGAAAFHIV 95 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 + + + H P A + G + S + Sbjct: 96 GKRRWNRRGAMVTDRYQHEHHHPTPGDLATWAAANGIRLIGIDNLPGSRPLET----FDL 151 Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L+ G EG GL + + H+ G +++N Sbjct: 152 PRNAMLVFGQEGPGLSEAMRAECEATLHIEQFGSTRSIN 190 >gi|261493233|ref|ZP_05989760.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311083|gb|EEY12259.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 237 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 78/230 (33%), Gaps = 11/230 (4%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPFPVKTVPPQTIDKIVGKE 108 +YG + + I +L AT +L H + + ++++ G E Sbjct: 3 VYGENACISLFQQRPGSIVRLWATVEGAKKLGDLMSYLAQHKKAYHVIDREEMERVTGTE 62 Query: 109 AVHQGL---ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165 + +L L + L++LD VN+ N+G I+R+ + GIIT Sbjct: 63 HHGDMCLLVKKTASFVLEGYLQVPKKQDCLVLLDGVNNAQNVGGIIRTCAFYGVKGIITE 122 Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225 S + S+ + G + +Q + L + Sbjct: 123 NVDSLNSSSAARVAEGGLEFVRALETKNKHIALVQLRQAGYQIVHLTRHKQAPSLTKIKL 182 Query: 226 NDKIALILGAEGKGLRPKTQETA-TSMAHLHMPGIIKA-LNVSNAAAVAL 273 +K+ +L +E + A + L + + LNV+ A + L Sbjct: 183 AEKVVFVL-SE---IPASDVAYAEDTTIQLSFNNPLNSGLNVAVNAGILL 228 >gi|72162848|ref|YP_290505.1| tRNA/rRNA methyltransferase [Thermobifida fusca YX] gi|71916580|gb|AAZ56482.1| tRNA/rRNA methyltransferase [Thermobifida fusca YX] Length = 227 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 4/135 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + +++ NIG+++R+A AF+ + R + + + H P Sbjct: 75 RRHPFHVAIENWEHDFNIGSVVRTANAFAARAVHIVGRRRWNRRGAMVTDRYQHIHHHPD 134 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + G + S + + L+ G EG GL + ++ Sbjct: 135 TASLVAWAEAHDLPLIGIDNLPGSVPLETYP----LPRECVLVFGQEGPGLSEEVRKVCV 190 Query: 250 SMAHLHMPGIIKALN 264 S+ + G +++N Sbjct: 191 SVLSIAQFGSTRSIN 205 >gi|291446085|ref|ZP_06585475.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] gi|291349032|gb|EFE75936.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] Length = 222 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 21/40 (52%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ G EG GL + +E AT++ + G +++N Sbjct: 157 LPRRCVLLFGQEGPGLTEEAREHATAVCSIAQFGSTRSIN 196 >gi|239942624|ref|ZP_04694561.1| putative RNA methyltransferase [Streptomyces roseosporus NRRL 15998] gi|239989083|ref|ZP_04709747.1| putative RNA methyltransferase [Streptomyces roseosporus NRRL 11379] Length = 233 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 21/40 (52%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ G EG GL + +E AT++ + G +++N Sbjct: 168 LPRRCVLLFGQEGPGLTEEAREHATAVCSIAQFGSTRSIN 207 >gi|89068982|ref|ZP_01156364.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola granulosus HTCC2516] gi|89045563|gb|EAR51627.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola granulosus HTCC2516] Length = 247 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 24/52 (46%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K+A++ G E G+ A+++ + + +LN++ + Y + Sbjct: 112 EKVAVMFGPERAGMENADIAAASAIVSVPVNPDFPSLNLAQCVLLLGYEWRR 163 >gi|322495535|emb|CBZ30840.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 607 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 4/161 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 NH + + ++ + L + G + R ++ A+ L D Sbjct: 121 NHALVQHFVKLSTNEKYRQARQMLVIGGRAMIEELCRAGHRPRHLMVERGKAIPELLHDR 180 Query: 86 NLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 V V + G + + T P+ + + ++VLD+V DP Sbjct: 181 ---RKTDVVLVDRSVSAAVNPGSDGYVGDFEIPTPPMKEQLIANHQRLNRVLVLDNVEDP 237 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 +G +LR+A + D II T + + ++A GA Sbjct: 238 GVLGTLLRTASGYQYDAIIATNHCADLYDHRVIRAARGAHF 278 >gi|218513549|ref|ZP_03510389.1| rRNA methylase protein [Rhizobium etli 8C-3] Length = 150 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 6/91 (6%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K +++ K + + G+ V A+ I L+ K A + + Sbjct: 24 NPIIKDIKALTNK-KSREESGTFLAEGLKLVIDAIELGWT-IRTLVYAKAAKGKPLVEQM 81 Query: 87 LPHPFP----VKTVPPQTIDKIVGKEAVHQG 113 V V I I ++ G Sbjct: 82 AAKTVASGGLVLEVSENVIGSITRRDNPQDG 112 >gi|309808393|ref|ZP_07702293.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 01V1-a] gi|308168361|gb|EFO70479.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 01V1-a] Length = 98 Score = 49.1 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 3/90 (3%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 N+ K+++ QK ++ + + G H V AL+ +K ++ T+ + +L Sbjct: 8 NNSIIKQIRKLKQK-KYRKDQMSYLIEGFHLVKEALD-MEQKYEYVIGTQETINKLKLTN 65 Query: 86 NLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115 + + V D++ E Sbjct: 66 KIFDK-SIILVNQAICDQLSDTENSQDIFY 94 >gi|77362425|ref|YP_341999.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas haloplanktis TAC125] gi|76877336|emb|CAI89553.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas haloplanktis TAC125] Length = 170 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + G E + + A + ++ G +N++ V LY Sbjct: 91 FTHPENAFYVFGPEDGSVSKDVLKWADEVVYIPTIG---CMNLAATCNVVLYDR 141 >gi|163868314|ref|YP_001609523.1| RNA methyltransferase [Bartonella tribocorum CIP 105476] gi|161017970|emb|CAK01528.1| RNA methyltransferase [Bartonella tribocorum CIP 105476] Length = 276 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 17/52 (32%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K ++ G E GL + + +LN++ A + Y Sbjct: 119 HKTGIVFGRERWGLENDEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|90023058|ref|YP_528885.1| hypothetical protein Sde_3418 [Saccharophagus degradans 2-40] gi|89952658|gb|ABD82673.1| tRNA/rRNA methyltransferase (SpoU) [Saccharophagus degradans 2-40] Length = 177 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + + G E + + A + ++ G LN++ V LY Q Sbjct: 92 FTHPEHALYVFGPEDGTINQSIIDAADAAVYIPTKG---CLNLAATVNVVLYDRQ 143 >gi|237822549|ref|ZP_04598394.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CCRI 1974M2] Length = 115 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 22/82 (26%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M +I+ K + + + K K R++ + G H A Sbjct: 1 MTIITSKANSVVKNAKKLRQKKYRKS---------------------AYLIEGWHLFEEA 39 Query: 61 LNNPSRKIFQLLATKNALARLD 82 + I ++ A +N +L Sbjct: 40 VQAGVT-IEKIFALENYRDQLA 60 >gi|325283787|ref|YP_004256328.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP] gi|324315596|gb|ADY26711.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP] Length = 155 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 2/134 (1%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL N+G + R+ + Y + A + Sbjct: 8 LHVVLFEPEKAGNVGNVARTCAVLGAALHLIRP-YGFHLGDREFRRAVMDYLQGVELHQH 66 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253 + A Q + S+ +++ Q L+LG E +GL +E Sbjct: 67 DSWTAFQSALPQTARVWAFSTHAQQYHTQAGFQRGDYLLLGPESRGLPAWLREPL-PTLK 125 Query: 254 LHMPGIIKALNVSN 267 L PG ++LN+S Sbjct: 126 LPQPGTGRSLNLSV 139 >gi|254787763|ref|YP_003075192.1| RNA methyltransferase [Teredinibacter turnerae T7901] gi|237684601|gb|ACR11865.1| putative tRNA/rRNA methyltransferase LasT [Teredinibacter turnerae T7901] Length = 233 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 19/53 (35%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + + L+ G E GL +++ + +LN+ A V Y Sbjct: 101 SGRSGLVFGCEASGLSNDQLALCDLYSYIPLATPYPSLNLGQAVMVYSYALSQ 153 >gi|71409670|ref|XP_807167.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70871110|gb|EAN85316.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 532 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 10/56 (17%) Query: 231 LILGAEGKGLRPKTQETAT----------SMAHLHMPGIIKALNVSNAAAVALYIT 276 +++G E G+ K + + ++ G I +LNV + +AL+ Sbjct: 163 IVVGHENNGVSRKYIDKMDVSGGKGCRAERVVYVPQYGTISSLNVVTSMGIALFYA 218 >gi|322503109|emb|CBZ38193.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 607 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 4/161 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +H + + ++ + L + G + R ++ + D Sbjct: 121 HHALVQHFVKLSTNEKYRQARQMLVIGGRAMIEELCRAGHRPRHLMVECGKRIPEFLRDR 180 Query: 86 NLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 V V + G + + T P+ + + ++VLD+V DP Sbjct: 181 ---RKTDVVLVDRSVSAAVTPGSDGYVGDFEIPTPPMKEQLIANHQRLNRVLVLDNVEDP 237 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 +G +LR+A + D II T + + ++A GA Sbjct: 238 GVLGTLLRTASGYQYDAIIATNHCADLYDHRVVRAARGAHF 278 >gi|320009792|gb|ADW04642.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC 33331] Length = 236 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 61/178 (34%), Gaps = 5/178 (2%) Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDPHN 146 PHP P + + + G A + D R + +++ N Sbjct: 38 PHPLPWPEGERYDPQLLADGDRRNVGDAYRYWTREAIVADLDTRRHDFHVAVENWGHDFN 97 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IG+++R+A AF I R + + + H P A + G Sbjct: 98 IGSVVRTANAFLAKEIHIVGRRRWNRRGAMVTDRYQHVRHHPDTADLTAWAAAEGFPIIG 157 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + ++ + L+ G EG GL + +E A+ + + G +++N Sbjct: 158 IDNLPGAVPLER----TELPRRCVLLFGQEGPGLTEEAREHASMVCSIAQFGSTRSIN 211 >gi|146101359|ref|XP_001469096.1| hypothetical protein [Leishmania infantum] gi|134073465|emb|CAM72196.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 607 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 4/161 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 +H + + ++ + L + G + R ++ + D Sbjct: 121 HHALVQHFVKLSTNEKYRQARQMLVIGGRAMIEELCRAGHRPRHLMVECGKRIPEFLRDR 180 Query: 86 NLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 V V + G + + T P+ + + ++VLD+V DP Sbjct: 181 ---RKTDVVLVDRSVSAAVTPGSDGYVGDFEIPTPPMKEQLIANHQRLNRVLVLDNVEDP 237 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 +G +LR+A + D II T + + ++A GA Sbjct: 238 GVLGTLLRTASGYQYDAIIATNHCADLYDHRVVRAARGAHF 278 >gi|254511946|ref|ZP_05124013.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium KLH11] gi|221535657|gb|EEE38645.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium KLH11] Length = 247 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 22/53 (41%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K++++ G E GL + A ++ + + +LN+ + Y Sbjct: 112 EKVSVLFGPERAGLENEDIAKANAIISVPVNPEYASLNLGQCVLLTAYEWMRQ 164 >gi|320532915|ref|ZP_08033679.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171 str. F0337] gi|320134872|gb|EFW27056.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171 str. F0337] Length = 236 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 20/40 (50%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ ++ G+EG+G+ + + + + G +++N Sbjct: 175 LPERCLMVFGSEGEGISAELSAGCSRLLRIGQYGSTRSIN 214 >gi|110679943|ref|YP_682950.1| RNA methyltransferase [Roseobacter denitrificans OCh 114] gi|109456059|gb|ABG32264.1| RNA methyltransferase, TrmH family [Roseobacter denitrificans OCh 114] Length = 251 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 22/52 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++IA++ G E GL A ++ + + +LN++ + Y Sbjct: 115 ERIAVLFGPERAGLENDDIARANAIISVPVNPAFPSLNLAQCVLLVGYEWMR 166 >gi|182437537|ref|YP_001825256.1| putative RNA methyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778192|ref|ZP_08237457.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus XylebKG-1] gi|178466053|dbj|BAG20573.1| putative RNA methyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658525|gb|EGE43371.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus XylebKG-1] Length = 244 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 20/40 (50%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ G EG GL + +E A+ + + G +++N Sbjct: 181 LPRRCVLLFGQEGPGLTEEAREHASMVCSIAQFGSTRSIN 220 >gi|330951486|gb|EGH51746.1| RNA methyltransferase [Pseudomonas syringae Cit 7] Length = 30 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 7/22 (31%), Positives = 11/22 (50%) Query: 260 IKALNVSNAAAVALYITQNHFA 281 + +LNVS A V L+ + Sbjct: 1 VSSLNVSVATGVCLFEALRQRS 22 >gi|325277915|ref|ZP_08143457.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas sp. TJI-51] gi|324096946|gb|EGB95250.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas sp. TJI-51] Length = 156 Score = 48.7 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D+ I G E L + + ++ G +N++ V LY Sbjct: 92 YTHPDRAIYIFGPEDGSLSEEVRGWCEETIYIPTEG---CMNLAATVNVVLYDRM 143 >gi|313497626|gb|ADR58992.1| TRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida BIRD-1] Length = 156 Score = 48.7 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D+ I G E L + + ++ G +N++ V LY Sbjct: 92 YTHPDRAIYIFGPEDGSLSEEVRGWCEETIYIPTEG---CMNLAATVNVVLYDRM 143 >gi|282863274|ref|ZP_06272333.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE] gi|282561609|gb|EFB67152.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE] Length = 243 Score = 48.7 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 62/178 (34%), Gaps = 5/178 (2%) Query: 88 PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHN 146 PHP P + + + + G A + D R + +++ N Sbjct: 45 PHPLPWPEGDRYDPELLAHGDRRNVGDAYRYWTREAIVADLDLRRHDFHVAVENWGHDFN 104 Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206 IG+++R+A AF + R + + + H P A + + G Sbjct: 105 IGSVVRTANAFLAKEVHIVGRRRWNRRGAMVTDRYQHVRHHPDTADLTAWAAAEGLPVIG 164 Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + + ++ + L+ G EG GL + + A+ + + G +++N Sbjct: 165 IDNLPGAVPLER----TELPRRCVLLFGQEGPGLTEEARAHASMVCSIAQFGSTRSIN 218 >gi|261496523|ref|ZP_05992903.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307726|gb|EEY09049.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] Length = 344 Score = 48.7 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 87/259 (33%), Gaps = 16/259 (6%) Query: 27 HRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81 + K+ ++ R + E + +YG + + I +L AT +L Sbjct: 81 NSSVKEKKNGPLSPRAPEKIKKNRLEEMKVYGENACISLFQQRPGSIVRLWATVEGAKKL 140 Query: 82 DWD--ANLPHPFPVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQLLM 136 H + + ++++ G E + +L L + L+ Sbjct: 141 GDLMSYLAQHKKAYHVIDREEMERVTGTEHHGDMCLLVKKTASFVLEGYLQVPKKQDCLV 200 Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +LD VN+ N+G I+R+ + GIIT S + S+ + G + Sbjct: 201 LLDGVNNAQNVGGIIRTCAFYGVKGIITENVDSLNSSSAARVAEGGLEFVRALETKNKHI 260 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLH 255 +Q + L + +K+ +L +E + A + L Sbjct: 261 ALVQLRQAGYQIVHLTRHKQAPSLTKIKLAEKVVFVL-SE---IPASDVAYAEDTTIQLS 316 Query: 256 MPGIIKA-LNVSNAAAVAL 273 + + LNV+ A + L Sbjct: 317 FNNPLNSGLNVAVNAGILL 335 >gi|114707293|ref|ZP_01440190.1| probable tRNA/rRNA methyltransferase protein [Fulvimarina pelagi HTCC2506] gi|114537174|gb|EAU40301.1| probable tRNA/rRNA methyltransferase protein [Fulvimarina pelagi HTCC2506] Length = 256 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K +I G E GL A + + +LN++ A + Y +N Sbjct: 116 GKTGVIFGREKYGLENDEVGLADEIVTFPVNPKFASLNIAQAVLLVSYAWRN 167 >gi|114798567|ref|YP_761999.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444] gi|114738741|gb|ABI76866.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC 15444] Length = 177 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 + A ILG E L + + + I NVS A A+ +Y H + Sbjct: 91 FRHPPQAAYILGPEKGNLSAEAVARCAHVVKIPTRFCI---NVSLAGALVMYD--RHLS 144 >gi|88857330|ref|ZP_01131973.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas tunicata D2] gi|88820527|gb|EAR30339.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas tunicata D2] Length = 175 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 D + G E L + + ++ G +N++ V LY Sbjct: 95 YQHPDNAFYVFGPEDGSLGKDILKWCDDVVYIPTIG---CMNLAATVNVVLYDR 145 >gi|269963982|ref|ZP_06178289.1| predicted rRNA methylase [Vibrio harveyi 1DA3] gi|269831266|gb|EEZ85418.1| predicted rRNA methylase [Vibrio harveyi 1DA3] Length = 172 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 3/56 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 Q + + G E L + + A + ++ G +N++ V LY Sbjct: 91 QFTHPENAIYVFGPEDGSLPQEMIDKAHHVVYVPTHG---CMNLAATVNVVLYDRM 143 >gi|256833631|ref|YP_003162358.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM 20603] gi|256687162|gb|ACV10055.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM 20603] Length = 254 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 5/165 (3%) Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159 + + V T + LD R L + +++ + NIG+++R+A AF+ Sbjct: 73 ELLTHGDQRNVIDRYRYWTMDAIVADLDEHR-HPLHIAIENWHHDFNIGSVVRTANAFAV 131 Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219 + + + + + H + + G I S + Sbjct: 132 AEVHIVGKRRWNRRGAMVTDRYQHIRHHEDAQAFAQWAQDNGLTVIGIDNIDGSVPIEG- 190 Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L+ G E GL QE + S+ H+ G +++N Sbjct: 191 ---FAFPRASVLVFGQESTGLTQPMQEVSQSVVHITQYGSTRSMN 232 >gi|330830514|ref|YP_004393466.1| TrmH family RNA methyltransferase [Aeromonas veronii B565] gi|328805650|gb|AEB50849.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas veronii B565] Length = 234 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 +K+A++ G E GL + +++L + +LN+ A + LY Sbjct: 105 NKVAIVFGCEESGLSNEQLAEVDLISYLPLKVSYPSLNLGQA--IMLYA 151 >gi|254486709|ref|ZP_05099914.1| RNA methyltransferase, TrmH family [Roseobacter sp. GAI101] gi|214043578|gb|EEB84216.1| RNA methyltransferase, TrmH family [Roseobacter sp. GAI101] Length = 257 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 21/52 (40%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++A++ G E GL A ++ + + +LN++ + Y Sbjct: 122 QRVAVMFGPERAGLENDDIARANAIVSVPVNPEFASLNLAQCVLLMGYEWMR 173 >gi|310820269|ref|YP_003952627.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1] gi|309393341|gb|ADO70800.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1] Length = 240 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL E ++ + ++N++ A + Y + Sbjct: 105 QGPVAIVFGDERSGLTNAEVERCHDLSAVPTDPSQPSINLAQAVLLYAYEVR 156 >gi|115375837|ref|ZP_01463088.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca DW4/3-1] gi|115367147|gb|EAU66131.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca DW4/3-1] Length = 231 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +A++ G E GL E ++ + ++N++ A + Y + Sbjct: 96 QGPVAIVFGDERSGLTNAEVERCHDLSAVPTDPSQPSINLAQAVLLYAYEVR 147 >gi|320335450|ref|YP_004172161.1| tRNA/rRNA methyltransferase SpoU [Deinococcus maricopensis DSM 21211] gi|319756739|gb|ADV68496.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus maricopensis DSM 21211] Length = 149 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 38/135 (28%), Gaps = 2/135 (1%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 L +VL N+G + R+ + Y + A + Sbjct: 1 MLHLVLYTPEKAGNVGNVARTCAVLGAHLHLIRP-YGFHLQDREFRRAVMDYLSGVTLHE 59 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 Q G S+ + + + L+ G E +GL A Sbjct: 60 HASWTHFQASLPAGAHVTAFSTRATHIHTTAPVSRGMYLLFGPESRGLPDWLLSGL-QAA 118 Query: 253 HLHMPGIIKALNVSN 267 + P ++LN+S Sbjct: 119 RIPQPAGGRSLNLSV 133 >gi|85705325|ref|ZP_01036424.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. 217] gi|85670198|gb|EAQ25060.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. 217] Length = 247 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K+A++ G E GL A ++ ++ + +LN+ + Y Q Sbjct: 112 EKVAVLFGPERAGLENDDIARANAIINVPVNPEFASLNLGQCVLLTAYEWQR 163 >gi|261335562|emb|CBH18556.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 539 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 13/59 (22%) Query: 231 LILGAEGKGLRPKTQET-------------ATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L++G E +G+ K E A + ++ G I +LNV + +AL+ Sbjct: 163 LLIGHENRGVSSKYIECDNATISDESDGQCADCVVYVPQYGTISSLNVVTSMGIALFYA 221 >gi|74025972|ref|XP_829552.1| hypothetical protein [Trypanosoma brucei TREU927] gi|70834938|gb|EAN80440.1| hypothetical protein, conserved [Trypanosoma brucei] Length = 539 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 13/59 (22%) Query: 231 LILGAEGKGLRPKTQET-------------ATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L++G E +G+ K E A + ++ G I +LNV + +AL+ Sbjct: 163 LLIGHENRGVSSKYIECDNATISDESDGQCADCVVYVPQYGTISSLNVVTSMGIALFYA 221 >gi|257069691|ref|YP_003155946.1| rRNA methylase [Brachybacterium faecium DSM 4810] gi|256560509|gb|ACU86356.1| rRNA methylase [Brachybacterium faecium DSM 4810] Length = 208 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 5/152 (3%) Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + LD R L + ++++ NIG+++R+A AF+ R + Sbjct: 38 FRYWRREAIVAELDTHR-HDLHVAIENLEHDANIGSVVRTANAFAVGAFHIVGRRRWNRR 96 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 + H P Q + + + + L++ Sbjct: 97 GAMVTDRYQHEIHHPDAAHLIAWAREQGRPLVAIDLVEGAVPIE----RTALPHNAVLVV 152 Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265 G EG G+ P+ + + + G +++NV Sbjct: 153 GQEGPGVSPELLAASELVVGITQFGSTRSINV 184 >gi|167035103|ref|YP_001670334.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida GB-1] gi|166861591|gb|ABY99998.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida GB-1] Length = 156 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 D+ I G E L + + ++ G +N++ V LY Sbjct: 92 YTHPDRAIYIFGPEDGSLSEEVRGWCEETIYIPTEG---CMNLAATVNVVLYDR 142 >gi|148546546|ref|YP_001266648.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida F1] gi|148510604|gb|ABQ77464.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida F1] Length = 156 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 D+ I G E L + + ++ G +N++ V LY Sbjct: 92 YTHPDRAIYIFGPEDGSLSEEVRGWCEETIYIPTEG---CMNLAATVNVVLYDR 142 >gi|322492292|emb|CBZ27567.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 479 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 57/169 (33%), Gaps = 6/169 (3%) Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + L + + ++ + +N ++LR A+ F + + Sbjct: 17 WGYHIQWPQNQILSPLTGKVDFV-VEDIKFAYNAWSLLRLAMFFGVKHPKVLSNMTTTTP 75 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--- 230 ++ + L + ++L + ++ +D+ + Sbjct: 76 SMDIMLSGNRLFFMHSHVKAHLNQSKVRIALTPNHPRAFPVQELVWETHCRFHDRQSAGV 135 Query: 231 -LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+LG E GL + + ++ G + +L++ +A A+A + T Sbjct: 136 QLVLGME-NGLSQEVVDACNLCTYIPQYGSVGSLSMLSALAIAAHSTWR 183 >gi|90408176|ref|ZP_01216344.1| 23S rRNA methyltransferase [Psychromonas sp. CNPT3] gi|90310706|gb|EAS38823.1| 23S rRNA methyltransferase [Psychromonas sp. CNPT3] Length = 173 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 D + G E L ++A ++ ++ G +N++ V LY Sbjct: 90 NFEHPDNALYLFGPEDGTLSQSLIDSADAVVYIPTQG---CMNLAATVNVVLYDR 141 >gi|220918283|ref|YP_002493587.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans 2CP-1] gi|219956137|gb|ACL66521.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans 2CP-1] Length = 237 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 + A++ G E GL ++ + +LN++ AA V LY Sbjct: 106 GRTAIVFGDERSGLTNDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLY 153 >gi|226324181|ref|ZP_03799699.1| hypothetical protein COPCOM_01960 [Coprococcus comes ATCC 27758] gi|225207730|gb|EEG90084.1| hypothetical protein COPCOM_01960 [Coprococcus comes ATCC 27758] Length = 100 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 7/61 (11%), Positives = 25/61 (40%), Gaps = 3/61 (4%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K++ ++ +K + + + G+ A P ++ ++ ++ +R + Sbjct: 7 NARVKQLVTWQKKRKARDEEGVYIVEGIRMYREA---PRAQVREVYVSEQFYSRYGEELG 63 Query: 87 L 87 L Sbjct: 64 L 64 >gi|86145019|ref|ZP_01063351.1| 23S rRNA methyltransferase [Vibrio sp. MED222] gi|218677041|ref|YP_002395860.1| rRNA methyltransferase [Vibrio splendidus LGP32] gi|85837918|gb|EAQ56030.1| 23S rRNA methyltransferase [Vibrio sp. MED222] gi|218325309|emb|CAV27330.1| rRNA methyltransferase [Vibrio splendidus LGP32] Length = 170 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + I G E + + A + ++ G +N++ V LY Sbjct: 91 FKHPENAIYIFGPEDGSISQDVADRADHVVYVPTVG---CMNLAATVNVLLYDR 141 >gi|84389413|ref|ZP_00991219.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01] gi|84376928|gb|EAP93801.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01] Length = 170 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + I G E + + A + ++ G +N++ V LY Sbjct: 91 FKHPENAIYIFGPEDGSISQDVADRADHVVYVPTVG---CMNLAATVNVLLYDR 141 >gi|299131733|ref|ZP_07024928.1| RNA methyltransferase, TrmH family, group 1 [Afipia sp. 1NLS2] gi|298591870|gb|EFI52070.1| RNA methyltransferase, TrmH family, group 1 [Afipia sp. 1NLS2] Length = 393 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 18/45 (40%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ G E GL + A + + +LN++ A + Y Sbjct: 124 ILFGRERSGLTNEEVALANRIVTFPVNPGFASLNLAQAVLLMGYE 168 >gi|260904198|ref|ZP_05912520.1| TrmH family RNA methyltransferase [Brevibacterium linens BL2] Length = 214 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 69/189 (36%), Gaps = 6/189 (3%) Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151 PV + + V + LDA R + + +++ NIG+++ Sbjct: 24 PVSEHFDPELLAEGDRRNVVDKYRYWKLEAIVADLDATR-HEFHVGVENWQHDLNIGSVV 82 Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 R+A AF+ + R + + + H P I + G Sbjct: 83 RTANAFNAAAVHIVGRRRWNRRGAMVTDRYQHIIHHPSIDDLLQWCTDNDVPLIGIDNFP 142 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 PLE + L+ G EG GL + + +T++ + G +++N + AAA+ Sbjct: 143 ----DSVPLETYDLPRRSLLLFGQEGPGLSEEAHQASTAVLSIAQYGSTRSMNAAAAAAI 198 Query: 272 ALY-ITQNH 279 ++ + H Sbjct: 199 TMHSWIRRH 207 >gi|254464114|ref|ZP_05077525.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacterales bacterium Y4I] gi|206685022|gb|EDZ45504.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacterales bacterium Y4I] Length = 250 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 23/53 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 +K+A++ G E GL + A ++ + + + +LN+ + Y Sbjct: 112 EKVAVMFGPERAGLENEDIAKANAIISVPVNPLYASLNLGQCVLLTGYEWMRQ 164 >gi|49474226|ref|YP_032268.1| RNA methyltransferase [Bartonella quintana str. Toulouse] gi|49239730|emb|CAF26112.1| RNA methyltransferase [Bartonella quintana str. Toulouse] Length = 278 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 17/52 (32%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ G E GL + + +LN++ A + Y Sbjct: 119 HRTGIVFGRERWGLENYEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|297193239|ref|ZP_06910637.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486] gi|197720510|gb|EDY64418.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486] Length = 219 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 20/40 (50%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ G EG GL + ++ A+ + + G +++N Sbjct: 156 LPRRCVLLFGQEGPGLTEEARKHASMVCSIAQFGSTRSIN 195 >gi|29841334|gb|AAP06366.1| similar to GenBank Accession Number AP001507 tRNA/rRNA methyltransferase in Bacillus halodurans [Schistosoma japonicum] Length = 179 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 7/51 (13%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + L LG+E +GL + + + I LN+ + +Y Sbjct: 131 PRPLVLALGSESRGLSENILNSCDLLLRIPGLAIQ--LNL-----IIVYHR 174 >gi|72548478|ref|XP_843394.1| hypothetical protein [Leishmania major strain Friedlin] gi|323363911|emb|CBZ12917.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 569 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 4/161 (2%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85 NH + + ++ + L + G + R ++ + D Sbjct: 83 NHALVQHFLKLSTNDKYRQARQMLVIGGRAMIEELCRAGHRPRHLMVECGKPIPEFLHDR 142 Query: 86 NLPHPFPVKTVPPQT-IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 V V + G + A+ T P+ + + ++VLD++ DP Sbjct: 143 ---RKTDVVLVDRSVSVAVTPGSDGYVGDFAIPTPPMKEKLIANHQRLNRVLVLDNIEDP 199 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 +G +LR+A + D II T + + ++A GA Sbjct: 200 GVLGTLLRTASGYQYDAIIATNHCADLYDHRVVRAARGAHF 240 >gi|262173677|ref|ZP_06041354.1| predicted rRNA methylase [Vibrio mimicus MB-451] gi|261891035|gb|EEY37022.1| predicted rRNA methylase [Vibrio mimicus MB-451] Length = 152 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 3/56 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +K + G E L + A + ++ G +N++ V +Y Sbjct: 68 HFEHPEKAIYLFGPEDGSLPQDVVDKAHHVVYVPTHG---CMNLAATVNVVMYDRM 120 >gi|258623419|ref|ZP_05718422.1| predicted rRNA methylase [Vibrio mimicus VM573] gi|258584234|gb|EEW08980.1| predicted rRNA methylase [Vibrio mimicus VM573] Length = 152 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 3/56 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +K + G E L + A + ++ G +N++ V +Y Sbjct: 68 HFEHPEKAIYLFGPEDGSLPQDVVDKAHHVVYVPTHG---CMNLAATVNVVMYDRM 120 >gi|258626473|ref|ZP_05721314.1| predicted rRNA methylase [Vibrio mimicus VM603] gi|258581255|gb|EEW06163.1| predicted rRNA methylase [Vibrio mimicus VM603] Length = 175 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 3/56 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +K + G E L + A + ++ G +N++ V +Y Sbjct: 91 HFEHPEKAIYLFGPEDGSLPQDVVDKAHHVVYVPTHG---CMNLAATVNVVMYDRM 143 >gi|322821913|gb|EFZ28112.1| hypothetical protein TCSYLVIO_5661 [Trypanosoma cruzi] Length = 532 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 10/64 (15%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETAT----------SMAHLHMPGIIKALNVSNAAAVA 272 + +++G E G+ K + + ++ G I +LNV + +A Sbjct: 155 CRLSSPARIVVGHENNGVSGKYIDKMDVSGGKGCRAERVVYVPQYGTISSLNVVTSMGIA 214 Query: 273 LYIT 276 L+ Sbjct: 215 LFYA 218 >gi|163759594|ref|ZP_02166679.1| hypothetical protein HPDFL43_09582 [Hoeflea phototrophica DFL-43] gi|162283191|gb|EDQ33477.1| hypothetical protein HPDFL43_09582 [Hoeflea phototrophica DFL-43] Length = 276 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 20/52 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +K ++ G E GLR A + + +LN++ A + Y Sbjct: 119 EKTGILFGRERIGLRNWEVGLADEIVTFPVNPAYASLNIAQAVLLISYEWLK 170 >gi|75675487|ref|YP_317908.1| RNA methyltransferase TrmH, group 1 [Nitrobacter winogradskyi Nb-255] gi|74420357|gb|ABA04556.1| RNA methyltransferase TrmH, group 1 [Nitrobacter winogradskyi Nb-255] Length = 403 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 19/49 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + ++ G E GL + A + + +LN++ A + Y Sbjct: 120 GHVGILFGRERAGLLNEEVAMADRIITYPVNPGFASLNLAQAVLLIGYE 168 >gi|157870403|ref|XP_001683752.1| hypothetical protein [Leishmania major strain Friedlin] gi|68126818|emb|CAJ05432.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 471 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 20/165 (12%), Positives = 54/165 (32%), Gaps = 6/165 (3%) Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + L + + ++ + +N +LR A+ F + + Sbjct: 20 WGYHIQWPQNQILSPLTGKVDFV-VEDIKFAYNAWCLLRLAMFFGVKHPKVLSDMTKTTP 78 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--- 230 ++ + L + +NL+ + ++ +D + Sbjct: 79 SMDIMLSGNRLFFMHSHVKANLSRSKVRIALTPNHPRAFPVQELTWNTHCRFHDHQSAGV 138 Query: 231 -LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 L+LG E GL + + ++ G + +L++ +A +A + Sbjct: 139 ELVLGME-NGLSQEVADACDLCTYIPQYGSVGSLSMLSALGIAAH 182 >gi|26991269|ref|NP_746694.1| RNA methyltransferase [Pseudomonas putida KT2440] gi|24986324|gb|AAN70158.1|AE016655_3 RNA methyltransferase, TrmH family [Pseudomonas putida KT2440] Length = 156 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D+ I G E L + ++ G +N++ V LY Sbjct: 92 YTHPDRAIYIFGPEDGSLSEDVRGWCEETIYIPTEG---CMNLAATVNVVLYDRM 143 >gi|121601814|ref|YP_989116.1| RNA methyltransferase [Bartonella bacilliformis KC583] gi|120613991|gb|ABM44592.1| RNA methyltransferase, TrmH family, group 1 [Bartonella bacilliformis KC583] Length = 275 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 20/58 (34%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + E K ++ G E GL+ + + +LN++ A + Y Sbjct: 113 QHENLGHKTGILFGRERWGLKNDEISLVNEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170 >gi|308799711|ref|XP_003074636.1| unnamed protein product [Ostreococcus tauri] gi|116000807|emb|CAL50487.1| unnamed protein product [Ostreococcus tauri] Length = 384 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 15/65 (23%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK---------------ALNVSNAA 269 K K+A++ G E GL + A++ + G K +LN+S+A Sbjct: 201 KRGKVAVLFGNERTGLTNEELAWASAAVVVPTAGAGKLCRKSLKYTGATGPTSLNLSHAV 260 Query: 270 AVALY 274 + + Sbjct: 261 GIIAH 265 >gi|260574015|ref|ZP_05842020.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sp. SW2] gi|259023481|gb|EEW26772.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sp. SW2] Length = 270 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 20/53 (37%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ ++ G E GL A ++ + + +LN+ + Y + Sbjct: 133 KRVGVLFGPERAGLENSDLVLANAIVSVPVNPDFPSLNLGQCVLLLGYEWRRQ 185 >gi|212635898|ref|YP_002312423.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella piezotolerans WP3] gi|212557382|gb|ACJ29836.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella piezotolerans WP3] Length = 175 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 DK I G E + + A ++ ++ G +N++ + V LY Sbjct: 97 FEHPDKAIYIFGPEDGTISQQVINRADAVVYVPTVG---CMNLAASVNVLLYDR 147 >gi|56552099|ref|YP_162938.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis subsp. mobilis ZM4] gi|241762049|ref|ZP_04760133.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752372|ref|YP_003225265.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543673|gb|AAV89827.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis subsp. mobilis ZM4] gi|241373515|gb|EER63102.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258551735|gb|ACV74681.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 243 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 19/48 (39%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ G E GL A ++ + + +LN++ A + Y Sbjct: 111 ILFGPERAGLETDDVALARTIITVPVNPEFSSLNLAQAVILVAYEWSK 158 >gi|329946190|ref|ZP_08293803.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170 str. F0386] gi|328527788|gb|EGF54779.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170 str. F0386] Length = 245 Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 20/40 (50%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ ++ G+EG+G+ + S+ + G +++N Sbjct: 184 LPERCLMVFGSEGEGISAELSAGCASLLRIGQYGSTRSIN 223 >gi|326504182|dbj|BAJ90923.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 217 Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 2/101 (1%) Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86 + K+ + + L L G+ + S I LL A + + Sbjct: 59 NPLVKRCVRLRDSAAYRRSCRRLVLVGLAPILEICRLGSVAIDCLLLLDGA--EVPDELR 116 Query: 87 LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 V V + KI G ++V A+ + D Sbjct: 117 ELSGGSVVHVSATVMKKISGMQSVDSTEAIAVMHMPRHFCD 157 >gi|90578908|ref|ZP_01234718.1| 23S rRNA methyltransferase [Vibrio angustum S14] gi|90439741|gb|EAS64922.1| 23S rRNA methyltransferase [Vibrio angustum S14] Length = 170 Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +K I G E + + A + ++ G +N++ + V LY Sbjct: 90 HFTHPEKAIYIFGPEDGSIAQDVADKADHVVYVPTVG---CMNLAASVNVVLYDR 141 >gi|89073053|ref|ZP_01159600.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34] gi|89051271|gb|EAR56727.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34] Length = 170 Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +K I G E + + A + ++ G +N++ + V LY Sbjct: 90 HFTHPEKAIYIFGPEDGSIAQDVADKADHVVYVPTVG---CMNLAASVNVVLYDR 141 >gi|325961989|ref|YP_004239895.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3] gi|323468076|gb|ADX71761.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3] Length = 210 Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 4/135 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R + +++ NIG ++R+A AF + R + + + H P Sbjct: 54 RRHNFHVAIENWQHDLNIGTVVRTANAFLAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPT 113 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + G PLE L+ G EG GL P+ A Sbjct: 114 VEDFVAWAQGEGLAIIGIDIFP----DSVPLETYELPRDCVLVFGQEGPGLTPEVHAAAA 169 Query: 250 SMAHLHMPGIIKALN 264 + + G +++N Sbjct: 170 ATLSIEQFGSTRSIN 184 >gi|330446225|ref|ZP_08309877.1| spoU rRNA Methylase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490416|dbj|GAA04374.1| spoU rRNA Methylase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 170 Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +K I G E + + A + ++ G +N++ + V LY Sbjct: 90 HFEHPEKAIYIFGPEDGSIAQDVADKADHVVYVPTVG---CMNLAASVNVVLYDR 141 >gi|301111568|ref|XP_002904863.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262095193|gb|EEY53245.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 216 Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 11/101 (10%), Positives = 25/101 (24%), Gaps = 6/101 (5%) Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 P + + G+ + A ++ E GL Sbjct: 51 RYSWSTPSAEVRGCCAFYDFTEARGYLKTKGCTIFGLTAHATPYEGTSAFVIDNEFPGLS 110 Query: 242 PKTQETATSMAHLHMPG---IIKA---LNVSNAAAVALYIT 276 + + H+ G + L+ + A+ L+ Sbjct: 111 EEQRAICDHFVHVPFHGEQTEASSHLTLDTTVVTAITLHHF 151 >gi|297198395|ref|ZP_06915792.1| rRNA methylase [Streptomyces sviceus ATCC 29083] gi|297147074|gb|EFH28473.1| rRNA methylase [Streptomyces sviceus ATCC 29083] Length = 260 Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 2/167 (1%) Query: 29 DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 DY + + + G + A + LL+ K D LP Sbjct: 17 DYTGLTDVELRRKREPAEGLFIAEGEKVIRRAKDAGYEMRSMLLSAKWVDVMRDVIDELP 76 Query: 89 HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148 PV V P+ +++ G LA L + ++ ++ +++++ VND NIG Sbjct: 77 A--PVYAVSPELAEQVTGYHVHRGALASMQRKPLPTAAELLQTARRVVIMESVNDHTNIG 134 Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 AI RSA A D ++ + + K + GA+ +PY R+ Sbjct: 135 AIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDTW 181 >gi|262190204|ref|ZP_06048480.1| rRNA methylase [Vibrio cholerae CT 5369-93] gi|262033901|gb|EEY52365.1| rRNA methylase [Vibrio cholerae CT 5369-93] Length = 170 Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ + G E L + + A + ++ G +N+S V LY Sbjct: 91 HFTHPEQAIYLFGPEDGSLPQEVVDQAHHVVYVPTHG---CMNLSATVNVVLYDR 142 >gi|224097422|ref|XP_002334612.1| predicted protein [Populus trichocarpa] gi|222873484|gb|EEF10615.1| predicted protein [Populus trichocarpa] Length = 206 Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 16/59 (27%) Query: 227 DKIALILGAEGKG---------LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 L+LG+EG G L + E + + +++LNVS AA V L+ Sbjct: 136 QPTILVLGSEGTGDEVEGEEINLERSSAEFGSFL-------AVESLNVSVAAGVLLHHL 187 >gi|119946348|ref|YP_944028.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37] gi|119864952|gb|ABM04429.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37] Length = 175 Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 I +K I G E ++ A ++ ++ G LN++ V LY Sbjct: 95 NFIHPEKALYIFGPEDGTIKQSVVNQADAVVYIPTIG---CLNLAATVNVVLYDR 146 >gi|532360|gb|AAA21799.1| ORFD1 [Bacillus subtilis] Length = 143 Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 13/132 (9%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102 ++ ++ G + V L + RK+++L +N + + ++ VP + +D Sbjct: 3 QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61 Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155 ++V HQG+ + A LD ++LD + DPHN+G+I+R+A Sbjct: 62 QMV--TGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTAD 119 Query: 156 AFSCDGIITTKR 167 A GI+ KR Sbjct: 120 AVGAHGIVIPKR 131 >gi|59711260|ref|YP_204036.1| 23S rRNA methyltransferase [Vibrio fischeri ES114] gi|59479361|gb|AAW85148.1| 23S rRNA methyltransferase [Vibrio fischeri ES114] Length = 169 Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 Q DK + G E + + + A + ++ G +N++ V LY Sbjct: 90 QFQHPDKAIYVFGPEDGSITQQVADRADHVVYVPTVG---CMNLAATVNVLLYDR 141 >gi|126736426|ref|ZP_01752167.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. CCS2] gi|126713964|gb|EBA10834.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. CCS2] Length = 246 Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 22/52 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K+A++ G E G+ A ++ + + +LN++ + Y Q Sbjct: 112 QKVAVMFGPERSGMENDDIARANAIISVPVNPDFPSLNLAQCVLLTGYEWQR 163 >gi|157374781|ref|YP_001473381.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sediminis HAW-EB3] gi|157317155|gb|ABV36253.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sediminis HAW-EB3] Length = 177 Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K + G E + + A ++ ++ G +N++ + V LY Sbjct: 96 FEHPAKAIYVFGPEDGTISQQVINRADAVVYVPTVG---CMNLAASVNVLLYDR 146 >gi|332978754|gb|EGK15446.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Psychrobacter sp. 1501(2011)] Length = 300 Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 20/45 (44%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 K+A++ G E +GL + A + LNV++A V Sbjct: 132 KVAVLFGREDRGLTNQELAMADYHIQIDANPDYPVLNVASAIQVI 176 >gi|293351672|ref|XP_002727843.1| PREDICTED: RNA methyltransferase like 1 [Rattus norvegicus] Length = 188 Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 11/97 (11%), Positives = 24/97 (24%), Gaps = 2/97 (2%) Query: 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 Y K R + + + + + L G ++ AL + + Sbjct: 92 LRYDKACPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKMFFFSRLEY 151 Query: 78 LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114 + L D + V + I + Sbjct: 152 IKELPVD--KLKGVSLIKVKFEDIKDWSDLVTPQGIM 186 >gi|92117174|ref|YP_576903.1| RNA methyltransferase TrmH, group 1 [Nitrobacter hamburgensis X14] gi|91800068|gb|ABE62443.1| RNA methyltransferase TrmH, group 1 [Nitrobacter hamburgensis X14] Length = 410 Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 19/49 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + ++ G E GL + A + + +LN++ A + Y Sbjct: 120 GHVGILFGRERAGLLNEEVAMADRIITYPVNPGFASLNLAQAVLLMGYE 168 >gi|85715191|ref|ZP_01046175.1| RNA methyltransferase TrmH, group 1 [Nitrobacter sp. Nb-311A] gi|85698106|gb|EAQ35979.1| RNA methyltransferase TrmH, group 1 [Nitrobacter sp. Nb-311A] Length = 407 Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 19/49 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + ++ G E GL + A + + +LN++ A + Y Sbjct: 120 GHVGILFGRERAGLLNEEVAMADRIITYPVNPGFASLNLAQAVLLMGYE 168 >gi|304391439|ref|ZP_07373381.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Ahrensia sp. R2A130] gi|303295668|gb|EFL90026.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Ahrensia sp. R2A130] Length = 261 Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 19/51 (37%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ ++ G E GL A + + +LN++ A + Y Sbjct: 119 ERTGILFGRERAGLESVEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWM 169 >gi|91976216|ref|YP_568875.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris BisB5] gi|91682672|gb|ABE38974.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris BisB5] Length = 397 Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 20/49 (40%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ G E GL+ + A + + +LN++ A + Y H Sbjct: 126 ILFGRERYGLQNEEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKH 174 >gi|46202068|ref|ZP_00053833.2| COG0565: rRNA methylase [Magnetospirillum magnetotacticum MS-1] Length = 247 Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 20/51 (39%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K ++ G E GL A ++ + + +LN++ A + Y Sbjct: 109 KFGVLFGPERTGLENDDVAVADTVLTVPLNPDYCSLNLAQAVLLISYEWHQ 159 >gi|269796792|ref|YP_003316247.1| rRNA methylase [Sanguibacter keddieii DSM 10542] gi|269098977|gb|ACZ23413.1| rRNA methylase [Sanguibacter keddieii DSM 10542] Length = 237 Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 21/40 (52%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ ++ G EG GL P+ + + + H+ G +++N Sbjct: 178 FPERCVMLFGQEGAGLTPEARSASVDLVHITQFGSTRSIN 217 >gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str. psy62] gi|254040581|gb|ACT57377.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 268 Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 22/49 (44%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 + +I G E GL + + ++ + + +LN+S A + ++ Sbjct: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 >gi|209884583|ref|YP_002288440.1| RNA methyltransferase TrmH, group 1 [Oligotropha carboxidovorans OM5] gi|209872779|gb|ACI92575.1| RNA methyltransferase TrmH, group 1 [Oligotropha carboxidovorans OM5] Length = 391 Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ G E GL + AT + + +LN++ A + Y Sbjct: 124 ILFGRERWGLTNEEVSLATRIVTFPVNPGFASLNLAQAVLLMGYE 168 >gi|316932884|ref|YP_004107866.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas palustris DX-1] gi|315600598|gb|ADU43133.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas palustris DX-1] Length = 400 Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 18/49 (36%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ G E GL A + + +LN++ A + Y H Sbjct: 126 ILFGRERHGLENDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKH 174 >gi|119478210|ref|ZP_01618266.1| 23S rRNA methyltransferase [marine gamma proteobacterium HTCC2143] gi|119448719|gb|EAW29963.1| 23S rRNA methyltransferase [marine gamma proteobacterium HTCC2143] Length = 157 Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + I G E LR + ++ G +N++ A V LY Sbjct: 91 YKHPPRAFYIFGPEDGSLRKNIIGYCSDTIYIPTTG---CMNLAAAVNVVLYDR 141 >gi|295395717|ref|ZP_06805908.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294971417|gb|EFG47301.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 206 Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 13/121 (10%), Positives = 31/121 (25%), Gaps = 2/121 (1%) Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 N L + + + +I +AL + Sbjct: 63 NWQHDLNIGSVVRTANAFNASAVHIVGKKRWNRRGAMVTDRYQHIYHHETAEALAQWCQE 122 Query: 206 GFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263 + + + E + + G EG GL + ++ + G +++ Sbjct: 123 RELPLIGIDNFPDSVALETYDLPRECVFLFGQEGPGLTDEAHHACEAVLSIEQYGSTRSM 182 Query: 264 N 264 N Sbjct: 183 N 183 >gi|126726420|ref|ZP_01742261.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium HTCC2150] gi|126704283|gb|EBA03375.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium HTCC2150] Length = 256 Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 20/52 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 K+ ++ G E GL A ++ + + +LN+ + Y + Sbjct: 122 QKVGILFGPERAGLENDDISRANAIISVPVNPAFASLNLGQCVLLLSYEYRR 173 >gi|83311228|ref|YP_421492.1| rRNA methylase [Magnetospirillum magneticum AMB-1] gi|82946069|dbj|BAE50933.1| rRNA methylase [Magnetospirillum magneticum AMB-1] Length = 255 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 19/48 (39%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ G E GL A ++ + + +LN++ A + Y Sbjct: 119 VLFGPERTGLENDDVAVADTVLTVPLNPEYCSLNLAQAVLLVSYEWHQ 166 >gi|262403692|ref|ZP_06080250.1| rRNA methylase [Vibrio sp. RC586] gi|262350196|gb|EEY99331.1| rRNA methylase [Vibrio sp. RC586] Length = 170 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ + G E L + + A + ++ G +N++ V LY Sbjct: 91 HFTHPEQAIYLFGPEDGSLPQEVVDQAHHVVYVPTHG---CMNLAATVNVVLYDR 142 >gi|229513183|ref|ZP_04402648.1| rRNA methylase [Vibrio cholerae TMA 21] gi|229349593|gb|EEO14548.1| rRNA methylase [Vibrio cholerae TMA 21] Length = 170 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ + G E L + + A + ++ G +N++ V LY Sbjct: 91 HFTHPEQAIYLFGPEDGSLPQEVVDQAHHVVYVPTHG---CMNLAATVNVVLYDR 142 >gi|229522766|ref|ZP_04412181.1| rRNA methylase [Vibrio cholerae TM 11079-80] gi|229340213|gb|EEO05220.1| rRNA methylase [Vibrio cholerae TM 11079-80] Length = 170 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ + G E L + + A + ++ G +N++ V LY Sbjct: 91 HFTHPEQAIYLFGPEDGSLPQEVVDQAHHVVYVPTHG---CMNLAATVNVVLYDR 142 >gi|229525984|ref|ZP_04415388.1| rRNA methylase [Vibrio cholerae bv. albensis VL426] gi|229336142|gb|EEO01160.1| rRNA methylase [Vibrio cholerae bv. albensis VL426] Length = 170 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ + G E L + + A + ++ G +N++ V LY Sbjct: 91 HFTHPEQAIYLFGPEDGSLPQEVVDQAHHVVYVPTHG---CMNLAATVNVVLYDR 142 >gi|153802741|ref|ZP_01957327.1| rRNA methylase, putative [Vibrio cholerae MZO-3] gi|124121737|gb|EAY40480.1| rRNA methylase, putative [Vibrio cholerae MZO-3] Length = 178 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ + G E L + + A + ++ G +N++ V LY Sbjct: 91 HFTHPEQAIYLFGPEDGSLPQEVVDQAHHVVYVPTHG---CMNLAATVNVVLYDR 142 >gi|261212397|ref|ZP_05926682.1| rRNA methylase [Vibrio sp. RC341] gi|297580425|ref|ZP_06942352.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|260838328|gb|EEX64984.1| rRNA methylase [Vibrio sp. RC341] gi|297536071|gb|EFH74905.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 170 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ + G E L + + A + ++ G +N++ V LY Sbjct: 91 HFTHPEQAIYLFGPEDGSLPQEVVDQAHHVVYVPTHG---CMNLAATVNVVLYDR 142 >gi|121585625|ref|ZP_01675421.1| 23S rRNA methyltransferase [Vibrio cholerae 2740-80] gi|121725811|ref|ZP_01679111.1| rRNA methylase, putative [Vibrio cholerae V52] gi|147671714|ref|YP_001215406.1| putative rRNA methylase [Vibrio cholerae O395] gi|153211863|ref|ZP_01947710.1| rRNA methylase, putative [Vibrio cholerae 1587] gi|153824394|ref|ZP_01977061.1| rRNA methylase, putative [Vibrio cholerae MZO-2] gi|153830522|ref|ZP_01983189.1| putative rRNA methylase [Vibrio cholerae 623-39] gi|229528543|ref|ZP_04417934.1| rRNA methylase [Vibrio cholerae 12129(1)] gi|254285652|ref|ZP_04960615.1| rRNA methylase, putative [Vibrio cholerae AM-19226] gi|262168476|ref|ZP_06036172.1| rRNA methylase [Vibrio cholerae RC27] gi|121550242|gb|EAX60256.1| 23S rRNA methyltransferase [Vibrio cholerae 2740-80] gi|121631576|gb|EAX63944.1| rRNA methylase, putative [Vibrio cholerae V52] gi|124116939|gb|EAY35759.1| rRNA methylase, putative [Vibrio cholerae 1587] gi|146314097|gb|ABQ18637.1| putative rRNA methylase [Vibrio cholerae O395] gi|148873981|gb|EDL72116.1| putative rRNA methylase [Vibrio cholerae 623-39] gi|149741948|gb|EDM55977.1| rRNA methylase, putative [Vibrio cholerae MZO-2] gi|150424149|gb|EDN16087.1| rRNA methylase, putative [Vibrio cholerae AM-19226] gi|227015313|gb|ACP11522.1| putative rRNA methylase [Vibrio cholerae O395] gi|229334905|gb|EEO00391.1| rRNA methylase [Vibrio cholerae 12129(1)] gi|262023005|gb|EEY41710.1| rRNA methylase [Vibrio cholerae RC27] gi|327485645|gb|AEA80051.1| RRNA methylase, putative [Vibrio cholerae LMA3894-4] Length = 170 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ + G E L + + A + ++ G +N++ V LY Sbjct: 91 HFTHPEQAIYLFGPEDGSLPQEVVDQAHHVVYVPTHG---CMNLAATVNVVLYDR 142 >gi|90578961|ref|ZP_01234771.1| 23S rRNA methyltransferase [Vibrio angustum S14] gi|90439794|gb|EAS64975.1| 23S rRNA methyltransferase [Vibrio angustum S14] Length = 155 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + I G E L+ + + ++ G ++N++ A V LY Sbjct: 94 YKHPKRAFYIFGPEDGTLKKEITDFCRETIYVPTNG---SMNLAAAVNVILYDR 144 >gi|89073005|ref|ZP_01159552.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34] gi|89051223|gb|EAR56679.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34] Length = 155 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + I G E L+ + + ++ G ++N++ A V LY Sbjct: 94 YKHPKRAFYIFGPEDGTLKKEITDFCRETIYVPTNG---SMNLAAAVNVILYDR 144 >gi|115523621|ref|YP_780532.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53] gi|115517568|gb|ABJ05552.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas palustris BisA53] Length = 397 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + ++ G E GL + A + + +LN++ A + Y H Sbjct: 122 GNVGILFGRERYGLENQEVALANRIITFPVNPAFASLNLAQAVLLVGYEWFKH 174 >gi|192292727|ref|YP_001993332.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas palustris TIE-1] gi|192286476|gb|ACF02857.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas palustris TIE-1] Length = 399 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 18/51 (35%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ G E GL A + + +LN++ A + Y H Sbjct: 124 TGIMFGRERHGLENDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKH 174 >gi|154338423|ref|XP_001565436.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134062485|emb|CAM42347.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 517 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 3/47 (6%) Query: 231 LILGAEGKGLRPKTQETA--TSMAHLHM-PGIIKALNVSNAAAVALY 274 +ILG+E +GLR + + + L + ++ + NVS A +V ++ Sbjct: 420 VILGSEARGLRDLSGKWGVPYQLVTLPLPNPMVDSFNVSVAGSVLMH 466 >gi|39936894|ref|NP_949170.1| tRNA/rRNA methyltransferase [Rhodopseudomonas palustris CGA009] gi|39650751|emb|CAE29274.1| tRNA/rRNA methyltransferase [Rhodopseudomonas palustris CGA009] Length = 404 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 18/51 (35%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ G E GL A + + +LN++ A + Y H Sbjct: 129 TGIMFGRERHGLENDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKH 179 >gi|116334955|ref|YP_802450.1| hypothetical protein CRP_053 [Candidatus Carsonella ruddii PV] gi|116235236|dbj|BAF35084.1| hypothetical protein [Candidatus Carsonella ruddii PV] Length = 132 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 37/122 (30%), Gaps = 1/122 (0%) Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214 + + I T + + + + I L K + LS Sbjct: 6 NFGNINSCIRTCYMFNVYVIIKNIYINSFVINYNNIIFIKNNILLLKFIKKTNCIVSLSI 65 Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 S L K +++G E G+ + + + K+LN+S + + LY Sbjct: 66 SSYFVLNNFKLLKKFVIVIGNEKYGINNSIILHSDFILKIKSYRK-KSLNLSIVSGITLY 124 Query: 275 IT 276 Sbjct: 125 HF 126 >gi|153005807|ref|YP_001380132.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5] gi|152029380|gb|ABS27148.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5] Length = 239 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 20/52 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + AL+ G E GL ++ + ++N++ A + Y + Sbjct: 112 GRTALVFGDERSGLANDEVLRCHDLSAIPTDEAQPSVNLAQAVLLYAYELRR 163 >gi|260770421|ref|ZP_05879354.1| rRNA methylase [Vibrio furnissii CIP 102972] gi|260615759|gb|EEX40945.1| rRNA methylase [Vibrio furnissii CIP 102972] gi|315181492|gb|ADT88405.1| 23S rRNA methyltransferase [Vibrio furnissii NCTC 11218] Length = 172 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 Q + + G E L + A + ++ G +N++ V +Y Sbjct: 91 QFVHPQNAIYLFGPEDGSLPQDVVDQAHHVVYVPTNG---CMNLAATVNVVMYDR 142 >gi|255030968|ref|ZP_05302919.1| rRNA methylase [Listeria monocytogenes LO28] Length = 92 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 6/86 (6%) Query: 33 MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92 M+ + + + + G H V AL + +LL + +W L + Sbjct: 1 MEKLQTR-KGRDKTGTYLVEGFHLVEEALRQDG-LVLELLVSSGVSVPEEW---LKGDYD 55 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALET 118 V + + I ++ + QG+ Sbjct: 56 VFEISTE-ISHLISETMTEQGVFAVV 80 >gi|291514444|emb|CBK63654.1| rRNA methylases [Alistipes shahii WAL 8301] Length = 178 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 53/134 (39%), Gaps = 3/134 (2%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + + +VLD+V N+GA R+ AF+ + I+ + S + K+A GA +P Sbjct: 20 MEKMPVTVVLDNVRSAQNVGAFFRTGDAFAVERIVLCGITATPPSRDIHKTALGAEMTVP 79 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQ 245 + ++ + ++ + G+ + + + AL+ G E G+ + Sbjct: 80 WSYCASTVGCIAQLRAEGYAVYAVEQVEGAVMLDAFRAAPGVKYALVFGNEVDGVGQEAV 139 Query: 246 ETATSMAHLHMPGI 259 + + G Sbjct: 140 DRCDGAVEIPQAGT 153 >gi|311897345|dbj|BAJ29753.1| putative RNA methyltransferase [Kitasatospora setae KM-6054] Length = 219 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 20/42 (47%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ L+ G EG GL + AT++ + G +++N Sbjct: 158 FRLPERCVLLFGQEGPGLTEEAWRHATAVCSIAQFGSTRSIN 199 >gi|27380857|ref|NP_772386.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110] gi|27354023|dbj|BAC51011.1| bll5746 [Bradyrhizobium japonicum USDA 110] Length = 398 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 19/49 (38%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 K ++ G E GL + A + + +LN++ A + Y Sbjct: 120 GKAGILFGRERWGLTNEEVGLANRIITFPVNPGFASLNLAQAVLLIGYE 168 >gi|330939261|gb|EGH42662.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. pisi str. 1704B] Length = 33 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 14/29 (48%) Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279 L M ++LN+SN AVA+Y Sbjct: 1 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 29 >gi|328883657|emb|CCA56896.1| tRNA or rRNA methyltransferase [Streptomyces venezuelae ATCC 10712] Length = 220 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 17/40 (42%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ G EG GL + + + + G +++N Sbjct: 159 LPRRCVLLFGQEGPGLTEEARAHVEMVCSIAQFGSTRSIN 198 >gi|220916347|ref|YP_002491651.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans 2CP-1] gi|219954201|gb|ACL64585.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans 2CP-1] Length = 269 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 19/41 (46%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 ++A++ G E +GL E ++ + ++N++ Sbjct: 123 QGEVAVVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLA 163 >gi|328464784|gb|EGF36099.1| rRNA methylase [Lactobacillus helveticus MTCC 5463] Length = 208 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 5/146 (3%) Query: 42 HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQT 100 + + + G H A+ + +K LL T+ AL + + D ++ V + Sbjct: 23 YRDEEGRYLIEGFHLFDEAIKSG-QKYQYLLGTEEALDKAEEDYDVDLSGKNVILINKAI 81 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + + + + LL D++ DP N+G I+R+A A D Sbjct: 82 ARHLSSTKNSQEIFMVLKIDQPREFPFNYGKWVLL---DNLADPGNVGTIIRTADAAGFD 138 Query: 161 GIITTKRYSPSESAVLAKSASGALEH 186 G++ + + + ++ G+ H Sbjct: 139 GVVLSPESADLYNPKTQRAMQGSQFH 164 >gi|197121584|ref|YP_002133535.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K] gi|196171433|gb|ACG72406.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K] Length = 269 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 18/38 (47%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 +A++ G E +GL E ++ + ++N++ Sbjct: 126 VAVVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLA 163 >gi|77457622|ref|YP_347127.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas fluorescens Pf0-1] gi|77381625|gb|ABA73138.1| putative RNA methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 178 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D+ I G E L + ++ + ++ G +N++ V LY Sbjct: 114 YTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPTTG---CMNLAATVNVVLYDRM 165 >gi|294084245|ref|YP_003551003.1| RNA methyltransferase TrmH, group 1 [Candidatus Puniceispirillum marinum IMCC1322] gi|292663818|gb|ADE38919.1| RNA methyltransferase TrmH, group 1 [Candidatus Puniceispirillum marinum IMCC1322] Length = 256 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 K ++AL+ G E GL A + +LN++ A + + + Sbjct: 113 KKGRVALLFGPEASGLDNNEVVLADVAVSAALNPAYPSLNLAQAVLLLAWEWR 165 >gi|260803601|ref|XP_002596678.1| hypothetical protein BRAFLDRAFT_122033 [Branchiostoma floridae] gi|229281937|gb|EEN52690.1| hypothetical protein BRAFLDRAFT_122033 [Branchiostoma floridae] Length = 471 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 80/225 (35%), Gaps = 22/225 (9%) Query: 31 KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK------NALARLDWD 84 ++ ++ N++ + N FL+G+ AL R QL Sbjct: 237 RQQRNENRQLKFAPAVGNEFLFGIAPCLLALQQGQRSFSQLFLKDAPYQTGADRIEEIES 296 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----------AVRNSQL 134 V +P + K++G + HQG+ LE + L + Sbjct: 297 LADEKEVKVVRIPKHRMTKMIG-DGTHQGVCLEATKRRAEPLSLEDISPTVDVDSERPPI 355 Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +VL+ V DP N GAILRS+ D II + + V++K++SGA+E + + Sbjct: 356 WLVLNEVQDPMNFGAILRSSYYLGVDKIIASSSNCCPLTPVVSKASSGAMETQTVYSMED 415 Query: 195 LTDALQK-----MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234 + LQ G + + L+LG Sbjct: 416 IPALLQNLSSSGWTVVGTVAATEDVEGTVVCGNFALSGPTVLVLG 460 >gi|312959593|ref|ZP_07774110.1| RNA methyltransferase [Pseudomonas fluorescens WH6] gi|311286310|gb|EFQ64874.1| RNA methyltransferase [Pseudomonas fluorescens WH6] Length = 155 Score = 46.4 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D+ I G E L + ++ + ++ G +N++ V LY Sbjct: 92 YTHPDRALYIFGPEDGSLDKEIRDWCEDVVYIPTTG---CMNLAATVNVVLYDRM 143 >gi|146339760|ref|YP_001204808.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278] gi|146192566|emb|CAL76571.1| Putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278] Length = 399 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 18/45 (40%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ G E GL + A + + +LN++ A + Y Sbjct: 124 ILFGRERSGLTNEEVARANRIITYPVNPGFASLNLAQAVLLMGYE 168 >gi|148256718|ref|YP_001241303.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1] gi|146408891|gb|ABQ37397.1| Putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1] Length = 399 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 18/45 (40%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ G E GL + A + + +LN++ A + Y Sbjct: 124 ILFGRERSGLTNEEVARANRIITYPVNPGFASLNLAQAVLLMGYE 168 >gi|108763165|ref|YP_630636.1| RNA methyltransferase [Myxococcus xanthus DK 1622] gi|108467045|gb|ABF92230.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622] Length = 240 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 21/52 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 +AL+ G E GL E ++ + ++N++ A + Y + Sbjct: 105 QGPVALVFGDERSGLTNAEVERVHDLSAVPTAPEQPSINLAQAVLLYAYEVR 156 >gi|322494262|emb|CBZ29561.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 671 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 29/73 (39%) Query: 231 LILGAEGKGLRPKTQET-----------------------------ATSMAHLHMPGIIK 261 L++G E G+R + A + ++ G Sbjct: 204 LVVGHENWGVRRSLLQAKEDTTQALLCARTRAAALASIPPSTPAPVADMVVYVPQYGTTS 263 Query: 262 ALNVSNAAAVALY 274 +LNV+ + +AL+ Sbjct: 264 SLNVATSLGIALF 276 >gi|260772959|ref|ZP_05881875.1| rRNA methylase [Vibrio metschnikovii CIP 69.14] gi|260612098|gb|EEX37301.1| rRNA methylase [Vibrio metschnikovii CIP 69.14] Length = 178 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 4/52 (7%) Query: 226 NDKIAL-ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + AL + G E + A + ++ G +N++ + V LY Sbjct: 94 HPPQALYVFGPEDGSIPQAIINQADEVVYVPTVG---CMNLAASVNVLLYDR 142 >gi|148975164|ref|ZP_01812088.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3] gi|145965088|gb|EDK30338.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3] Length = 171 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + I G E + + A + ++ G +N++ V LY Sbjct: 91 FKHPENAIYIFGPEDGSITQDVADRADHVVYVPTVG---CMNLAATVNVLLYDR 141 >gi|68059315|ref|XP_671643.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56488008|emb|CAI03490.1| hypothetical protein PB301201.00.0 [Plasmodium berghei] Length = 110 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 16/73 (21%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHL----------HMPGI------IKALNVS 266 KN+K+ +ILG E KGL + + ++ + +LNV+ Sbjct: 36 INKNEKVMIILGNESKGLNEDIIKNSDICIYINNLFDEQNIQPNLKNTNDNIIVNSLNVN 95 Query: 267 NAAAVALYITQNH 279 N ++ L+ ++ Sbjct: 96 NVCSIILHHFHSN 108 >gi|169838212|ref|ZP_02871400.1| hypothetical protein cdivTM_14129 [candidate division TM7 single-cell isolate TM7a] Length = 35 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 15/28 (53%) Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVA 272 E + A + + G I++LNVS A + Sbjct: 2 IENSDIKAIIPIYGNIESLNVSVATGIF 29 >gi|85714273|ref|ZP_01045261.1| tRNA/rRNA methyltransferase (SpoU) [Nitrobacter sp. Nb-311A] gi|85698720|gb|EAQ36589.1| tRNA/rRNA methyltransferase (SpoU) [Nitrobacter sp. Nb-311A] Length = 156 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 46/129 (35%) Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 + L + P N G ILR + I P ++ L+ + +R + Sbjct: 3 VALFQPDIPQNTGTILRLCACLDVEAHIIEPAGFPVSDRHFRRAGMDYLDEVAIVRHDSW 62 Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255 Q + G + + ++ +P D L+ G E G+ + A + + Sbjct: 63 QKFQQWRAADGGRLVLFTTKGARPYLDHRFADTDILLFGRESAGVPDAVADAADATLVIP 122 Query: 256 MPGIIKALN 264 + +++LN Sbjct: 123 VRPGLRSLN 131 >gi|326772449|ref|ZP_08231733.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505] gi|326637081|gb|EGE37983.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505] Length = 218 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 6/42 (14%), Positives = 20/42 (47%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 ++ ++ G+EG+G+ + + + + G +++N Sbjct: 155 ADLPERCLMVFGSEGEGISLELSAGCSRLLRIGQYGSTRSIN 196 >gi|288959273|ref|YP_003449614.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510] gi|288911581|dbj|BAI73070.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510] Length = 258 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 21/49 (42%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 K+ ++ G E GL A ++ + + +LN++ A + Y Sbjct: 120 QKLGVMFGPERTGLVNDDLTLAQTLVTVPLNPAFSSLNLAQAVLLIGYE 168 >gi|146088269|ref|XP_001466033.1| hypothetical protein [Leishmania infantum JPCM5] gi|134070134|emb|CAM68468.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 468 Score = 46.0 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 58/169 (34%), Gaps = 6/169 (3%) Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + L + + ++ + +N ++LR A+ F + + + Sbjct: 17 WGYHIQWPQNQILSPLTGKVNFV-VEDIKFAYNAWSLLRLAMFFGVEHPKVLSDMTKTTP 75 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--- 230 ++ + L + +NL+ + ++ Q D + Sbjct: 76 SMDIMLSGNRLFFMHSRVKANLSRSKVRIALTPNHPRAFPVQELVWNTQFRFRDHQSAGV 135 Query: 231 -LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+LG E GL + + ++ G + +L++ +A A+A + T Sbjct: 136 ELVLGME-NGLSQEVADACNLCTYIPQYGSVGSLSMLSALAIAAHSTWR 183 >gi|322499556|emb|CBZ34630.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 468 Score = 46.0 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 58/169 (34%), Gaps = 6/169 (3%) Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173 + L + + ++ + +N ++LR A+ F + + + Sbjct: 17 WGYHIQWPQNQILSPLTGKVNFV-VEDIKFAYNAWSLLRLAMFFGVEHPKVLSDMTKTTP 75 Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--- 230 ++ + L + +NL+ + ++ Q D + Sbjct: 76 SMDIMLSGNRLFFMHSRVKANLSRSKVRIALTPNHPRAFPVQELVWKTQFRFRDHHSAGV 135 Query: 231 -LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+LG E GL + + ++ G + +L++ +A A+A + T Sbjct: 136 ELVLGME-NGLSQEVADACNLCTYIPQYGSVGSLSMLSALAIAAHSTWR 183 >gi|157962405|ref|YP_001502439.1| tRNA/rRNA methyltransferase SpoU [Shewanella pealeana ATCC 700345] gi|157847405|gb|ABV87904.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella pealeana ATCC 700345] Length = 174 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 DK I G E + + A ++ ++ G +N++ + V LY Sbjct: 97 FEHPDKAIYIFGPEDGTISQQVINGADAVVYVPTVG---CMNLAASVNVLLYDR 147 >gi|261883694|ref|ZP_06007733.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 160 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 84/153 (54%), Positives = 110/153 (71%) Query: 91 FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150 FPV+ V P+ IDK G EAVHQG+ +E PL + L +R S LL+VLD V DPHN+GAI Sbjct: 4 FPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAI 63 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 +RSAVAF +ITT R+SP E+ VLAK+ASGALE I +I + NL +A++++H+ GFQTI Sbjct: 64 MRSAVAFGAGALITTSRHSPQETGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTI 123 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 GL S +E + ++IAL+LGAEG GLR K Sbjct: 124 GLDSQGPLEMEATLSGNRIALVLGAEGXGLRQK 156 >gi|330968088|gb|EGH68348.1| hypothetical protein PSYAC_26292 [Pseudomonas syringae pv. actinidiae str. M302091] Length = 166 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D+ I G E L + ++ + ++ G +N++ V LY Sbjct: 92 YTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPTEG---CMNLAATVNVVLYDRM 143 >gi|330959300|gb|EGH59560.1| hypothetical protein PMA4326_12164 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 166 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D+ I G E L + ++ + ++ G +N++ V LY Sbjct: 92 YTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPTEG---CMNLAATVNVVLYDRM 143 >gi|330879586|gb|EGH13735.1| hypothetical protein PSYMP_25410 [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 166 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D+ I G E L + ++ + ++ G +N++ V LY Sbjct: 92 YTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPTEG---CMNLAATVNVVLYDRM 143 >gi|302187110|ref|ZP_07263783.1| hypothetical protein Psyrps6_12195 [Pseudomonas syringae pv. syringae 642] gi|330952608|gb|EGH52868.1| hypothetical protein PSYCIT7_14813 [Pseudomonas syringae Cit 7] Length = 166 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D+ I G E L + ++ + ++ G +N++ V LY Sbjct: 92 YTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPTEG---CMNLAATVNVVLYDRM 143 >gi|289676543|ref|ZP_06497433.1| hypothetical protein PsyrpsF_24909 [Pseudomonas syringae pv. syringae FF5] Length = 85 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D+ I G E L + ++ + ++ G +N++ V LY Sbjct: 11 YTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPTEG---CMNLAATVNVVLYDRM 62 >gi|28871068|ref|NP_793687.1| hypothetical protein PSPTO_3916 [Pseudomonas syringae pv. tomato str. DC3000] gi|213969699|ref|ZP_03397834.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|301383550|ref|ZP_07231968.1| hypothetical protein PsyrptM_12996 [Pseudomonas syringae pv. tomato Max13] gi|302062116|ref|ZP_07253657.1| hypothetical protein PsyrptK_19191 [Pseudomonas syringae pv. tomato K40] gi|302130106|ref|ZP_07256096.1| hypothetical protein PsyrptN_01860 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28854318|gb|AAO57382.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213925507|gb|EEB59067.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] Length = 165 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D+ I G E L + ++ + ++ G +N++ V LY Sbjct: 92 YTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPTEG---CMNLAATVNVVLYDRM 143 >gi|66044814|ref|YP_234655.1| hypothetical protein Psyr_1569 [Pseudomonas syringae pv. syringae B728a] gi|63255521|gb|AAY36617.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae B728a] gi|330900092|gb|EGH31511.1| hypothetical protein PSYJA_22049 [Pseudomonas syringae pv. japonica str. M301072PT] gi|330974095|gb|EGH74161.1| hypothetical protein PSYAR_26774 [Pseudomonas syringae pv. aceris str. M302273PT] gi|330982587|gb|EGH80690.1| hypothetical protein PSYAP_29228 [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 166 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D+ I G E L + ++ + ++ G +N++ V LY Sbjct: 92 YTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPTEG---CMNLAATVNVVLYDRM 143 >gi|284034585|ref|YP_003384516.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836] gi|283813878|gb|ADB35717.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836] Length = 226 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 17/42 (40%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 + L+ G EG GL T + ++ G +++N Sbjct: 163 YELPEACVLLFGQEGPGLTDAAHRICTDVLNIGQYGSTRSIN 204 >gi|297183287|gb|ADI19425.1| predicted rRNA methylase (spou class) [uncultured Pseudomonadales bacterium HF0500_12O04] Length = 156 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 D+ I G E L E + ++ G +N++ V LY Sbjct: 92 YTHPDRAIYIFGPEDGSLGKDVLEWCEDVIYIPTTG---CMNLAATVNVVLYDR 142 >gi|146096583|ref|XP_001467855.1| hypothetical protein [Leishmania infantum JPCM5] gi|134072221|emb|CAM70923.1| conserved hypothetical protein [Leishmania infantum JPCM5] gi|322501828|emb|CBZ36910.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 671 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 29/73 (39%) Query: 231 LILGAEGKGLRPKTQET-----------------------------ATSMAHLHMPGIIK 261 L++G E G+R A + ++ G Sbjct: 204 LVVGHENWGVRRSLLRAKDDTTQVPLCDRTRTAALAGIPRPTPAPVADMVVYVPQYGTTS 263 Query: 262 ALNVSNAAAVALY 274 +LNV+ + +AL+ Sbjct: 264 SLNVATSLGIALF 276 >gi|157873987|ref|XP_001685489.1| hypothetical protein [Leishmania major strain Friedlin] gi|68128561|emb|CAJ08693.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 671 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 29/73 (39%) Query: 231 LILGAEGKGLRPKTQET-----------------------------ATSMAHLHMPGIIK 261 L++G E G+R A + ++ G Sbjct: 204 LVVGHENWGVRRSLLRAKDGTTLAPLCDRTRTAALVGIPRSTPAPMADMVVYVPQYGTTS 263 Query: 262 ALNVSNAAAVALY 274 +LNV+ + +AL+ Sbjct: 264 SLNVATSLGIALF 276 >gi|15601385|ref|NP_233016.1| rRNA methylase, putative [Vibrio cholerae O1 biovar eltor str. N16961] gi|153819784|ref|ZP_01972451.1| rRNA methylase, putative [Vibrio cholerae NCTC 8457] gi|227812194|ref|YP_002812204.1| putative rRNA methylase [Vibrio cholerae M66-2] gi|229506208|ref|ZP_04395717.1| rRNA methylase [Vibrio cholerae BX 330286] gi|229509934|ref|ZP_04399414.1| rRNA methylase [Vibrio cholerae B33] gi|229516505|ref|ZP_04405952.1| rRNA methylase [Vibrio cholerae RC9] gi|229605747|ref|YP_002876451.1| rRNA methylase [Vibrio cholerae MJ-1236] gi|254849785|ref|ZP_05239135.1| 23S rRNA methyltransferase [Vibrio cholerae MO10] gi|255746599|ref|ZP_05420546.1| rRNA methylase [Vibrio cholera CIRS 101] gi|262158809|ref|ZP_06029922.1| rRNA methylase [Vibrio cholerae INDRE 91/1] gi|298499432|ref|ZP_07009238.1| 23S rRNA methyltransferase [Vibrio cholerae MAK 757] gi|9658040|gb|AAF96528.1| rRNA methylase, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126509683|gb|EAZ72277.1| rRNA methylase, putative [Vibrio cholerae NCTC 8457] gi|227011336|gb|ACP07547.1| putative rRNA methylase [Vibrio cholerae M66-2] gi|229346386|gb|EEO11357.1| rRNA methylase [Vibrio cholerae RC9] gi|229352379|gb|EEO17319.1| rRNA methylase [Vibrio cholerae B33] gi|229356559|gb|EEO21477.1| rRNA methylase [Vibrio cholerae BX 330286] gi|229372233|gb|ACQ62655.1| rRNA methylase [Vibrio cholerae MJ-1236] gi|254845490|gb|EET23904.1| 23S rRNA methyltransferase [Vibrio cholerae MO10] gi|255736353|gb|EET91751.1| rRNA methylase [Vibrio cholera CIRS 101] gi|262029382|gb|EEY48033.1| rRNA methylase [Vibrio cholerae INDRE 91/1] gi|297541413|gb|EFH77464.1| 23S rRNA methyltransferase [Vibrio cholerae MAK 757] Length = 170 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 ++ + G E L + + A + ++ G +N++ V LY Sbjct: 91 HFTHPEQAIYLFGPEDGSLPQEVVDQAHYVVYVPTHG---CMNLAATVNVVLYDR 142 >gi|86750840|ref|YP_487336.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris HaA2] gi|86573868|gb|ABD08425.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris HaA2] Length = 398 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 18/49 (36%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 ++ G E GL A + + +LN++ A + Y H Sbjct: 126 ILFGRERYGLENHEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKH 174 >gi|332306692|ref|YP_004434543.1| tRNA/rRNA methyltransferase (SpoU) [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174021|gb|AEE23275.1| tRNA/rRNA methyltransferase (SpoU) [Glaciecola agarilytica 4H-3-7+YE-5] Length = 179 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 45/153 (29%), Gaps = 9/153 (5%) Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 P + + + + + + + P N+G+ILR+A + D ++ T A Sbjct: 10 PDISSPSDDSVTLCIINPKSPQNMGSILRAAGCYRADSVLYTG------ERYARARAFNT 63 Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + I + PL + G E + Sbjct: 64 DTKNVGLNIPLAQIDEPMPEPHMAMVAVELVEGATPLPHFEHPKHAYYVFGPEDGSIEQS 123 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + ++ G +N++ V LY Sbjct: 124 ILDKCQHVVYVPTTG---CMNLAATVNVLLYDR 153 >gi|296448617|ref|ZP_06890486.1| tRNA/rRNA methyltransferase (SpoU) [Methylosinus trichosporium OB3b] gi|296253867|gb|EFH01025.1| tRNA/rRNA methyltransferase (SpoU) [Methylosinus trichosporium OB3b] Length = 275 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 18/48 (37%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +I G E GL A S+ + +LN++ A + Y Sbjct: 131 VIFGPERTGLDNDEVALADSILTFPVNPAYASLNLAQAVLLTGYEWFR 178 >gi|255514101|gb|EET90364.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 234 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 + + L++G + GL + S+ + LN+S+A A+ LY Sbjct: 109 ENMTLLIGRDNTGLNSEELFQCNSIVFIPTSQRYPTLNISHALAILLYALTAQ 161 >gi|229589046|ref|YP_002871165.1| putative RNA methyltransferase [Pseudomonas fluorescens SBW25] gi|229360912|emb|CAY47772.1| putative RNA methyltransferase [Pseudomonas fluorescens SBW25] Length = 155 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 D+ I G E L + ++ + ++ G +N++ V LY Sbjct: 92 YTHPDRALYIFGPEDGSLDKEIRDWCEDVVYIPTTG---CMNLAATVNVVLYDR 142 >gi|134100013|ref|YP_001105674.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|291002995|ref|ZP_06560968.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|133912636|emb|CAM02749.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 81 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 12/34 (35%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 L++G E GL E +A + M Sbjct: 12 CDPRGPTVLVVGNETTGLSRGWTEACDEVARIRM 45 >gi|70728880|ref|YP_258629.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5] gi|68343179|gb|AAY90785.1| RNA methyltransferase, putative [Pseudomonas fluorescens Pf-5] Length = 155 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 D+ I G E L + ++ + ++ G +N++ V LY Sbjct: 92 YTHPDRALYIFGPEDGSLDKEIRDWCEDVVYIPTTG---CMNLAATVNVVLYDR 142 >gi|330718907|ref|ZP_08313507.1| tRNA/rRNA methyltransferase [Leuconostoc fallax KCTC 3537] Length = 33 Score = 45.6 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 17/31 (54%) Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282 + M G +++LN S AA++ +Y N K Sbjct: 2 LTIPMIGHVQSLNASVAASLLIYQGFNSRHK 32 >gi|146078921|ref|XP_001463640.1| hypothetical protein [Leishmania infantum JPCM5] gi|321399555|emb|CBZ08742.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 518 Score = 45.6 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Query: 231 LILGAEGKGLRPKTQETA--TSMAHLHM-PGIIKALNVSNAAAVALY 274 +ILG+E +GLR + L + ++ +LNVS A +V ++ Sbjct: 422 VILGSEAQGLRGLNGRWGVPYQLVTLPLSNPMVDSLNVSVAGSVLMH 468 >gi|242022908|ref|XP_002431879.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517220|gb|EEB19141.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 364 Score = 45.6 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 4/55 (7%) Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSM----AHLHMPGIIKALNVSNA 268 + N+ I +I+G E G+ + + + + +LN S A Sbjct: 301 NYNDVNYSNNSIVIIIGGESYGISEDAYKFGERRKGLRVTIPLLNNVDSLNSSVA 355 >gi|104783013|ref|YP_609511.1| hypothetical protein PSEEN4029 [Pseudomonas entomophila L48] gi|95112000|emb|CAK16727.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 133 Score = 45.6 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D+ I G E L + ++ G +N++ V LY Sbjct: 69 YTHPDRAIYIFGPEDGSLDADVRAWCEETIYIPTEG---CMNLAATVNVVLYDRM 120 >gi|127514505|ref|YP_001095702.1| RNA methyltransferase [Shewanella loihica PV-4] gi|126639800|gb|ABO25443.1| RNA methyltransferase, TrmH family, group 2 [Shewanella loihica PV-4] Length = 154 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 37/160 (23%), Gaps = 24/160 (15%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R C + E L ++ + R Sbjct: 1 MFHIALYEPEIAPNTGNIIRLCANNGCQLHLIEPLGFDLEEKKLRRAGLDYSDLTRVTRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 + L M +P + L+ G E +GL E+ + Sbjct: 61 KDFESFLSAMAGKRIMACTTKG--SRPHSEIAFEKDDVLLFGPETRGLPMPIIESIPTSQ 118 Query: 251 MAHLHMPGIIKALNVSNA----------AAVALYITQNHF 280 + M A A+ Y Sbjct: 119 RLRIPMA----------ASSRSLNLSNSVAIISYEAWRQL 148 >gi|94984180|ref|YP_603544.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM 11300] gi|94554461|gb|ABF44375.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM 11300] Length = 153 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 2/138 (1%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188 + L +VL N+G + R+ D + + + A Sbjct: 1 MSGPLLHVVLFEPEKAGNVGNVARTCAVLGADLHLIRP-FGFHLHDREFRRAVMDYLQGV 59 Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248 + A Q + S+ ++ + L+ G E +GL +E Sbjct: 60 TLHEHANWTAYQAALPPEARVWAFSTHAETFHTRAGFRRGDHLVFGPESRGLPVWLREAL 119 Query: 249 TSMAHLHMPGIIKALNVS 266 + L PG ++LN++ Sbjct: 120 PA-LKLPQPGGGRSLNLA 136 >gi|170727353|ref|YP_001761379.1| tRNA/rRNA methyltransferase SpoU [Shewanella woodyi ATCC 51908] gi|169812700|gb|ACA87284.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella woodyi ATCC 51908] Length = 177 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + DK + G E + + + A ++ ++ G +N++ + V LY Sbjct: 99 FVHPDKALYVFGPEDGTIGQEIIDKADAVVYVPTVG---CMNLAASVNVLLYDR 149 >gi|117919921|ref|YP_869113.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. ANA-3] gi|117612253|gb|ABK47707.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. ANA-3] Length = 202 Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +K + G E + + + A ++ ++ G +N++ + V LY Sbjct: 110 FVHPEKAFYVFGPEDGTIGQEIIDRADAVVYVPTVG---CMNLAASVNVLLYDR 160 >gi|113969762|ref|YP_733555.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-4] gi|114046991|ref|YP_737541.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-7] gi|113884446|gb|ABI38498.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-4] gi|113888433|gb|ABI42484.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-7] Length = 202 Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +K + G E + + + A ++ ++ G +N++ + V LY Sbjct: 110 FVHPEKAFYVFGPEDGTIGQEIIDRADAVVYVPTVG---CMNLAASVNVLLYDR 160 >gi|71281665|ref|YP_270768.1| RNA methyltransferase [Colwellia psychrerythraea 34H] gi|71147405|gb|AAZ27878.1| RNA methyltransferase, TrmH family [Colwellia psychrerythraea 34H] Length = 194 Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 I + I G E ++ + + A + ++ G +N++ V LY Sbjct: 111 HFIHPPEAVYIFGPEDSSVKQEVIDIADDVVYVPTVG---CMNLAATVNVLLYDR 162 >gi|83942524|ref|ZP_00954985.1| RNA methyltransferase, TrmH family protein, group 1 [Sulfitobacter sp. EE-36] gi|83953745|ref|ZP_00962466.1| RNA methyltransferase, TrmH family, group 1 [Sulfitobacter sp. NAS-14.1] gi|83841690|gb|EAP80859.1| RNA methyltransferase, TrmH family, group 1 [Sulfitobacter sp. NAS-14.1] gi|83846617|gb|EAP84493.1| RNA methyltransferase, TrmH family protein, group 1 [Sulfitobacter sp. EE-36] Length = 250 Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 21/52 (40%) Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 +++++ G E GL A ++ + + +LN++ + Y Sbjct: 115 RRVSVLFGPERAGLENDDISRANAIVSVPVNPAFASLNLAQCVLLMGYEWMR 166 >gi|330808105|ref|YP_004352567.1| RNA methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376213|gb|AEA67563.1| putative RNA methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 156 Score = 45.2 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D+ I G E L ++ + ++ G +N++ V LY Sbjct: 92 YTHPDRALYIFGPEDGSLDKDIRDWCEDVVYIPTTG---CMNLAATVNVVLYDRM 143 >gi|195479399|ref|XP_002086585.1| GE22771 [Drosophila yakuba] gi|194186375|gb|EDW99986.1| GE22771 [Drosophila yakuba] Length = 174 Score = 45.2 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 7/62 (11%), Positives = 20/62 (32%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 + + +L + + + + + + + G + AL + L + K Sbjct: 104 NLEFVRLTLQDPLTSTLLTTVRSRKRRDKNRQIIVEGRRLIQEALQCGLKMEALLFSQKE 163 Query: 77 AL 78 L Sbjct: 164 QL 165 >gi|109898550|ref|YP_661805.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoalteromonas atlantica T6c] gi|109700831|gb|ABG40751.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoalteromonas atlantica T6c] Length = 198 Score = 45.2 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + G E + + + ++ G +N++ V LY Sbjct: 112 HFRHPKHAYYVFGPEDGSIEQSVLDRCQHVVYVPTKG---CMNLAATVNVLLYDR 163 >gi|114563829|ref|YP_751342.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella frigidimarina NCIMB 400] gi|114335122|gb|ABI72504.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella frigidimarina NCIMB 400] Length = 180 Score = 45.2 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 I D I G E + + + A + ++ G +N++ + V LY Sbjct: 99 FIHPDNAFYIFGPEDGTIPQQLIDAADDVVYVPTVG---CMNLAASVNVLLYDR 149 >gi|167624575|ref|YP_001674869.1| tRNA/rRNA methyltransferase SpoU [Shewanella halifaxensis HAW-EB4] gi|167354597|gb|ABZ77210.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella halifaxensis HAW-EB4] Length = 174 Score = 45.2 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +K I G E + + A ++ ++ G +N++ + V LY Sbjct: 97 FEHPEKAIYIFGPEDGTISQQVVNGADAVVYVPTVG---CMNLAASVNVLLYDR 147 >gi|91794831|ref|YP_564482.1| RNA methyltransferase TrmH, group 2 [Shewanella denitrificans OS217] gi|91716833|gb|ABE56759.1| RNA methyltransferase TrmH, group 2 [Shewanella denitrificans OS217] Length = 153 Score = 45.2 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 36/159 (22%), Gaps = 22/159 (13%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 + L N G I+R + E L ++ + R Sbjct: 1 MFHIALYEPEIAPNTGNIIRLCANNGSHLHLIEPLGFDLEEKKLRRAGLDYADLANVTRH 60 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250 N D LQ M +P + L+ G E +GL A Sbjct: 61 KNYDDFLQAMAGKRIMVCTTKG--SRPHTELEFAKDDVLLFGPETRGLPMDIINAAPLEQ 118 Query: 251 MAHLHM---------PGIIKALNVSNAAAVALYITQNHF 280 + M + A+ Y Sbjct: 119 RLRIPMMSSSRSLNLSNSV---------AIISYEAWRQL 148 >gi|323138521|ref|ZP_08073589.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242] gi|322396155|gb|EFX98688.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242] Length = 289 Score = 45.2 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 18/48 (37%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 ++ G E GL A ++ + +LN++ A + Y Sbjct: 130 VLFGPERTGLDNDDVALADAILTFPVNPAYASLNLAQAVLLTGYEWFR 177 >gi|260914536|ref|ZP_05921004.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] gi|260631327|gb|EEX49510.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] Length = 361 Score = 45.2 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 98/278 (35%), Gaps = 15/278 (5%) Query: 6 KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65 + K+ + S + + + + ++ E + +YG + A + Sbjct: 82 SGEEGKVKVVVRSSGLTEKPREKKTGPLSPRAPEKIKKNRSEEMKVYGENACQALFSQRP 141 Query: 66 RKIFQLLATKNALAR--LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123 I ++ AT + + + V + +V H G+ + Sbjct: 142 ESIVRIWATVEMAKKSGELFSYLAENKKAYHVVDNAEL-TLVSGTEHHGGICMLVKKARP 200 Query: 124 PT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179 T LD R L+ +D V + HN+G ++R++ AF G+I K ++ + ++ A Sbjct: 201 LTLSGYLDIPRKQDCLVFIDGVQNAHNLGGVIRTSAAFGVKGVIVEKVFADNLNSSAAAR 260 Query: 180 ASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237 + + ++ D Q + S+ KPL + K+ ++ E Sbjct: 261 VAEGGMEYIRVLETDYADNALQQLRKAGYQIVHLTSNKQAKPLAKLKFAQKVVFVV-NE- 318 Query: 238 KGLRPKTQETATSMAHLHMPG--IIKALNVSNAAAVAL 273 +G + + L + + LN++ A + L Sbjct: 319 QG-KTSLAQPEDEQVVLTLGNPLKAE-LNIAVATGILL 354 >gi|296269772|ref|YP_003652404.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833] gi|296092559|gb|ADG88511.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM 43833] Length = 184 Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 1/136 (0%) Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 + +++L ++L+ V P N+G++ R+A AF I +P K+A G Sbjct: 21 SWRCRTHNRLGLILESVTGPFNVGSVFRTAAAFGVAAIRLAGNATPPTHPKAQKTALGTD 80 Query: 185 EHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + + +T A+ M + P+ + + + L+LGAE G+ P Sbjct: 81 RLVEWHAPVPVTQAIAAMREDGYRIVAVEITGDAVPIYEADLDGDVCLLLGAEEHGVSPA 140 Query: 244 TQETATSMAHLHMPGI 259 E A S+ ++ G Sbjct: 141 ALEAADSVVYIPQVGR 156 >gi|320327784|gb|EFW83792.1| hypothetical protein PsgRace4_23395 [Pseudomonas syringae pv. glycinea str. race 4] Length = 143 Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D+ I G E L ++ + ++ G +N++ V LY Sbjct: 69 YTHPDRALYIFGPEDGSLDQDIRDWCEDVVYIPTEG---CMNLAATVNVVLYDRM 120 >gi|237800273|ref|ZP_04588734.1| hypothetical protein POR16_15693 [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023130|gb|EGI03187.1| hypothetical protein POR16_15693 [Pseudomonas syringae pv. oryzae str. 1_6] Length = 136 Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D+ I G E L ++ + ++ G +N++ V LY Sbjct: 62 YTHPDRALYIFGPEDGSLDQDIRDWCEDVVYIPTEG---CMNLAATVNVVLYDRM 113 >gi|71734439|ref|YP_273805.1| hypothetical protein PSPPH_1553 [Pseudomonas syringae pv. phaseolicola 1448A] gi|257483942|ref|ZP_05637983.1| hypothetical protein PsyrptA_11854 [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628938|ref|ZP_06461892.1| hypothetical protein PsyrpaN_28001 [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651080|ref|ZP_06482423.1| hypothetical protein Psyrpa2_25584 [Pseudomonas syringae pv. aesculi str. 2250] gi|298486137|ref|ZP_07004200.1| RNA methyltransferase, TrmH family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554992|gb|AAZ34203.1| conserved hypothetical protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|298159144|gb|EFI00202.1| RNA methyltransferase, TrmH family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325222|gb|EFW81289.1| hypothetical protein PsgB076_07342 [Pseudomonas syringae pv. glycinea str. B076] gi|330868064|gb|EGH02773.1| hypothetical protein PSYAE_12603 [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330877492|gb|EGH11641.1| hypothetical protein Pgy4_11177 [Pseudomonas syringae pv. glycinea str. race 4] gi|330894744|gb|EGH27405.1| hypothetical protein PSYMO_40295 [Pseudomonas syringae pv. mori str. 301020] gi|330989382|gb|EGH87485.1| hypothetical protein PLA107_30467 [Pseudomonas syringae pv. lachrymans str. M301315] gi|331013128|gb|EGH93184.1| hypothetical protein PSYTB_26371 [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 166 Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 D+ I G E L ++ + ++ G +N++ V LY Sbjct: 92 YTHPDRALYIFGPEDGSLDQDIRDWCEDVVYIPTEG---CMNLAATVNVVLYDRM 143 >gi|322492223|emb|CBZ27497.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 517 Score = 44.8 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Query: 231 LILGAEGKGLRPKTQETA--TSMAHLHM-PGIIKALNVSNAAAVALY 274 +ILG+E +GLR + L + ++ + NVS A +V ++ Sbjct: 422 VILGSEAQGLRDLNGRWGVPYQLVTLPLPNPMVDSFNVSVAGSVLMH 468 >gi|24374596|ref|NP_718639.1| RNA methyltransferase [Shewanella oneidensis MR-1] gi|24349210|gb|AAN56083.1|AE015744_4 RNA methyltransferase, TrmH family, putative [Shewanella oneidensis MR-1] Length = 203 Score = 44.8 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + ++ + G E + + + A ++ ++ G +N++ + V LY Sbjct: 111 FVHPERAFYVFGPEDGTIGQEIIDRADAVVYVPTVG---CMNLAASVNVLLYDR 161 >gi|322505530|emb|CAM42983.2| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 672 Score = 44.8 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 29/73 (39%) Query: 231 LILGAEGKGLRPKTQET-----------------------------ATSMAHLHMPGIIK 261 L++G E G+R T A + ++ G Sbjct: 204 LVVGHENWGVRRSLLRTKDVTTPVPMTDPTCATAPAGISESKSAPVADMVVYIPQYGTTS 263 Query: 262 ALNVSNAAAVALY 274 +LNV + +AL+ Sbjct: 264 SLNVVTSLGIALF 276 >gi|154343195|ref|XP_001567543.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 672 Score = 44.8 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 29/73 (39%) Query: 231 LILGAEGKGLRPKTQET-----------------------------ATSMAHLHMPGIIK 261 L++G E G+R T A + ++ G Sbjct: 204 LVVGHENWGVRRSLLRTKDVTTPVPMTDPTCATAPAGISESKSAPVADMVVYIPQYGTTS 263 Query: 262 ALNVSNAAAVALY 274 +LNV + +AL+ Sbjct: 264 SLNVVTSLGIALF 276 >gi|256752503|ref|ZP_05493360.1| RNA 2-O ribose methyltransferase substrate binding [Thermoanaerobacter ethanolicus CCSD1] gi|256748638|gb|EEU61685.1| RNA 2-O ribose methyltransferase substrate binding [Thermoanaerobacter ethanolicus CCSD1] Length = 158 Score = 44.8 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 11/151 (7%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103 E + G + V A+ + I ++ +K A + NL V T + K Sbjct: 2 EEQNVILGRNPVIEAIKSGKE-IEKIYVSKTAGGNISKIINLAKEAGIVVSTTDNDILSK 60 Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156 + G + HQG+ A +D + L++LD + DPHN+GAI+RSA A Sbjct: 61 LAGSQ-NHQGVVAVGAVYKYFDVDDLLEYAEQRKEKPFLLILDEITDPHNLGAIIRSAEA 119 Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHI 187 F GII K+ K+ + Sbjct: 120 FGVHGIIIPKKAGCRSKCYCCKNFCRSSRTY 150 >gi|304411867|ref|ZP_07393478.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS183] gi|307303365|ref|ZP_07583120.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica BA175] gi|304349727|gb|EFM14134.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS183] gi|306913725|gb|EFN44147.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica BA175] Length = 249 Score = 44.8 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + K + G E + + + A ++ ++ G +N++ + V LY Sbjct: 135 FVHPAKAFYVFGPEDGTIGQEIIDKADAVVYVPTVG---CMNLAASVNVLLYDR 185 >gi|217972788|ref|YP_002357539.1| tRNA/rRNA methyltransferase SpoU [Shewanella baltica OS223] gi|217497923|gb|ACK46116.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS223] Length = 249 Score = 44.8 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + K + G E + + + A ++ ++ G +N++ + V LY Sbjct: 135 FVHPAKAFYVFGPEDGTIGQEIIDKADAVVYVPTVG---CMNLAASVNVLLYDR 185 >gi|160875952|ref|YP_001555268.1| tRNA/rRNA methyltransferase SpoU [Shewanella baltica OS195] gi|160861474|gb|ABX50008.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS195] gi|315268147|gb|ADT95000.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS678] Length = 254 Score = 44.8 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + K + G E + + + A ++ ++ G +N++ + V LY Sbjct: 135 FVHPAKAFYVFGPEDGTIGQEIIDKADAVVYVPTVG---CMNLAASVNVLLYDR 185 >gi|120598379|ref|YP_962953.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. W3-18-1] gi|120558472|gb|ABM24399.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. W3-18-1] Length = 262 Score = 44.8 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + K + G E + + + A ++ ++ G +N++ + V LY Sbjct: 135 FVHPAKAFYVFGPEDGTIGQEIIDKADAVVYVPTVG---CMNLAASVNVLLYDR 185 >gi|90423088|ref|YP_531458.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris BisB18] gi|90105102|gb|ABD87139.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris BisB18] Length = 410 Score = 44.8 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 17/45 (37%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ G E GL A + + +LN++ A + Y Sbjct: 126 IMFGRERYGLENDEVALANRIVTFPVNPGFASLNLAQAVLLMGYE 170 >gi|126174955|ref|YP_001051104.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS155] gi|125998160|gb|ABN62235.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS155] Length = 254 Score = 44.8 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + K + G E + + + A ++ ++ G +N++ + V LY Sbjct: 135 FVHPAKAFYVFGPEDGTIGQEIIDKADAVVYVPTVG---CMNLAASVNVLLYDR 185 >gi|330886609|gb|EGH20270.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020] Length = 178 Score = 44.8 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 8/113 (7%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ + + R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155 VHQG+ + +P LD S LL+VLD V DPHN+GA LR+A Sbjct: 67 VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTAD 119 >gi|67459187|ref|YP_246811.1| rRNA methylase [Rickettsia felis URRWXCal2] gi|67004720|gb|AAY61646.1| rRNA methylase [Rickettsia felis URRWXCal2] Length = 46 Score = 44.8 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 15/27 (55%) Query: 256 MPGIIKALNVSNAAAVALYITQNHFAK 282 M GII++LN+ ++ + LY + Sbjct: 1 MYGIIESLNLGTSSGIVLYEIAKQRRE 27 >gi|269214337|ref|ZP_06158511.1| RNA methyltransferase, TrmH family [Neisseria lactamica ATCC 23970] gi|269210034|gb|EEZ76489.1| RNA methyltransferase, TrmH family [Neisseria lactamica ATCC 23970] Length = 83 Score = 44.8 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 18/85 (21%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60 M IS +E I + + + + Q L GVH + Sbjct: 1 MKHISSANNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42 Query: 61 LNNPSRKIFQLLATKNALARLDWDA 85 L + R + + + Sbjct: 43 LQSGGRPVGVYIPEAKMPSEEVRKL 67 >gi|182678308|ref|YP_001832454.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp. indica ATCC 9039] gi|182634191|gb|ACB94965.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp. indica ATCC 9039] Length = 271 Score = 44.4 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 18/45 (40%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 ++ G E GL A ++ + +LN++ A + Y Sbjct: 130 ILFGPERTGLANDDIALADAILTFPVNPAYASLNLAQAVLLTGYE 174 >gi|269104837|ref|ZP_06157533.1| RNA methyltransferase TrmH family [Photobacterium damselae subsp. damselae CIP 102761] gi|268161477|gb|EEZ39974.1| RNA methyltransferase TrmH family [Photobacterium damselae subsp. damselae CIP 102761] Length = 182 Score = 44.4 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +K I G E + + + A + ++ G +N++ + V LY Sbjct: 94 FQHPNKAIYIFGPEDGSIDQEIADRAQHVVYVPTVG---CMNLAASVNVLLYDR 144 >gi|170723055|ref|YP_001750743.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida W619] gi|169761058|gb|ACA74374.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida W619] Length = 133 Score = 44.4 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 D+ I G E L + ++ G +N++ V LY Sbjct: 69 YTHPDRAIYIFGPEDGSLDANVRAWCEETIYIPTEG---CMNLAATVNVVLYDR 119 >gi|307104610|gb|EFN52863.1| hypothetical protein CHLNCDRAFT_138347 [Chlorella variabilis] Length = 1710 Score = 44.4 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 6/42 (14%), Positives = 13/42 (30%) Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262 + + L+LG E +G+ + G + Sbjct: 1563 QDFRFPRRTVLVLGREKEGIPSALLGLLDHSVEIPQLGARSS 1604 >gi|302844295|ref|XP_002953688.1| hypothetical protein VOLCADRAFT_106038 [Volvox carteri f. nagariensis] gi|300261097|gb|EFJ45312.1| hypothetical protein VOLCADRAFT_106038 [Volvox carteri f. nagariensis] Length = 429 Score = 44.4 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 14/55 (25%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA---LYITQ 277 ++AL+ G E G+ + ++ ++L++S+A ++A LY + Sbjct: 352 PPRVALVFGREELGMSDEEVDSCE-----------ESLSLSHAVSIALCTLYQAR 395 >gi|146293543|ref|YP_001183967.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella putrefaciens CN-32] gi|145565233|gb|ABP76168.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella putrefaciens CN-32] gi|319426843|gb|ADV54917.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella putrefaciens 200] Length = 257 Score = 44.4 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + K + G E + + + A ++ ++ G +N++ + V LY Sbjct: 130 FVHPVKAFYVFGPEDGTIGQEIIDKADAVVYVPTVG---CMNLAASVNVLLYDR 180 >gi|215445825|ref|ZP_03432577.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T85] gi|289757748|ref|ZP_06517126.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T85] gi|289713312|gb|EFD77324.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T85] Length = 95 Score = 44.4 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 21/77 (27%), Gaps = 3/77 (3%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102 + G + V+AAL + ++ T+ A R + H V V + Sbjct: 21 RRRAGRFLAEGPNLVAAALARG--LVREVFVTEVAARRHELLLA-AHEASVHLVTERAAK 77 Query: 103 KIVGKEAVHQGLALETA 119 + Sbjct: 78 ALSDTSHRPGWWRCAIC 94 >gi|322825586|gb|EFZ30499.1| hypothetical protein TCSYLVIO_3210 [Trypanosoma cruzi] Length = 408 Score = 44.1 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 24/82 (29%), Gaps = 39/82 (47%) Query: 231 LILGAEGKGLRPKTQETATSMAHLH---MP-------GIIK------------------- 261 L+LG E KGL P+ + H+ M Sbjct: 311 LLLGNEDKGLPPEVVRLCSHAVHIPSPWMQQYERRRLHHADTTATKGNCAKGKNGVVLED 370 Query: 262 ----------ALNVSNAAAVAL 273 +LNVS A+A+ L Sbjct: 371 DVALLRPQEVSLNVSAASAIIL 392 >gi|84394228|ref|ZP_00992956.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01] gi|86147034|ref|ZP_01065351.1| 23S rRNA methyltransferase [Vibrio sp. MED222] gi|218709943|ref|YP_002417564.1| RNA methyltransferase [Vibrio splendidus LGP32] gi|84375142|gb|EAP92061.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01] gi|85835099|gb|EAQ53240.1| 23S rRNA methyltransferase [Vibrio sp. MED222] gi|218322962|emb|CAV19139.1| RNA methyltransferase [Vibrio splendidus LGP32] Length = 163 Score = 44.1 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + I G E L+ + + ++ G +N++ A V LY Sbjct: 99 YKHPPRAFYIFGPEDGTLKKEITDFCRETIYVPTNG---CMNLAAAVNVILYDRM 150 >gi|294141663|ref|YP_003557641.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12] gi|293328132|dbj|BAJ02863.1| RNA methyltransferase, TrmH family, putative [Shewanella violacea DSS12] Length = 179 Score = 44.1 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + DK + G E + + A ++ ++ G +N++++ V LY Sbjct: 101 FVHPDKAIYVFGPEDGTIDQALIDEADAVVYVPTIG---CMNLASSVNVLLYDR 151 >gi|328716874|ref|XP_003246062.1| PREDICTED: NFX1-type zinc finger-containing protein 1-like isoform 2 [Acyrthosiphon pisum] gi|328716876|ref|XP_001949970.2| PREDICTED: NFX1-type zinc finger-containing protein 1-like isoform 1 [Acyrthosiphon pisum] Length = 2065 Score = 44.1 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 41/179 (22%), Gaps = 1/179 (0%) Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L +++ L K+ RLD L D +G + + Sbjct: 1528 LACGHNQVWVLCCDKDKEFRLDSQYLLDKCREPCLQKLNCNDICLGTCGECKQGRIHVPC 1587 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 N P N I + + Sbjct: 1588 SEICNKINPCNHTCKFPCKERCPPCNQKCIYSCVHSRCTRLCGVPCVRCKEKCEWKCPHL 1647 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGK 238 + + + + G IG + PL + + D+ ++ G E + Sbjct: 1648 KCTRKCFELCNRHPCYEPCKFKLNCGHDCIGFCGEPCPPLCRICQEDEVTTIVFGNEDE 1706 >gi|209694822|ref|YP_002262750.1| putative RNA methyltransferase [Aliivibrio salmonicida LFI1238] gi|208008773|emb|CAQ78972.1| putative RNA methyltransferase [Aliivibrio salmonicida LFI1238] Length = 152 Score = 44.1 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + I G E L+ + + ++ G +N++ A V +Y Sbjct: 91 YKHPPRAFYIFGPEDGTLKKEITDFCRETIYVPTNG---CMNLAAAVNVIMYDRM 142 >gi|127513340|ref|YP_001094537.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella loihica PV-4] gi|126638635|gb|ABO24278.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella loihica PV-4] Length = 174 Score = 44.1 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 K + G E L + A + ++ G +N++++ V LY Sbjct: 97 FSHPQKAIYLFGPEDGTLDQALIDCADEVVYVPTVG---CMNLASSVNVLLYDR 147 >gi|59711737|ref|YP_204513.1| 23S rRNA methyltransferase [Vibrio fischeri ES114] gi|197335716|ref|YP_002155925.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11] gi|59479838|gb|AAW85625.1| 23S rRNA methyltransferase [Vibrio fischeri ES114] gi|197317206|gb|ACH66653.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11] Length = 152 Score = 44.1 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 + I G E L+ + + ++ G +N++ A V +Y Sbjct: 91 YKHPPRAFYIFGPEDGTLKKEITDFCRETIYVPTNG---CMNLAAAVNVIMYDRM 142 >gi|157870265|ref|XP_001683683.1| hypothetical protein [Leishmania major strain Friedlin] gi|68126749|emb|CAJ05174.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 518 Score = 44.1 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Query: 231 LILGAEGKGLRPKTQETA--TSMAHLHMPGII-KALNVSNAAAVALY 274 +ILG+E +GLR + L +P + + NVS A +V ++ Sbjct: 423 VILGSEAQGLRDLNGRWGVPYQLVTLPLPNPVVDSFNVSVAGSVLMH 469 >gi|163750174|ref|ZP_02157416.1| RNA methyltransferase, TrmH family, putative [Shewanella benthica KT99] gi|161330030|gb|EDQ01014.1| RNA methyltransferase, TrmH family, putative [Shewanella benthica KT99] Length = 183 Score = 44.1 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + DK + G E + + A ++ ++ G +N++++ V LY Sbjct: 104 FVHPDKAIYVFGPEDGTIEQALIDAADAVVYVPTIG---CMNLASSVNVLLYDR 154 >gi|254292954|ref|YP_003058977.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814] gi|254041485|gb|ACT58280.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814] Length = 253 Score = 44.1 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 19/44 (43%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 ++ GAE GL + A + + +LN++ A V + Sbjct: 116 VMFGAEKAGLLNEDVALADGILTYPVDRSFSSLNLAQAVGVFAH 159 >gi|261326341|emb|CBH09167.1| SpoU type methylase, putative [Trypanosoma brucei gambiense DAL972] Length = 481 Score = 43.7 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 +ILG E G+ + + ++ G + +L++ +A A+A++ Sbjct: 142 IILGME-NGMSEEVRAGCDYCLYVPQYGSVGSLSMLSAMAIAVH 184 >gi|117927678|ref|YP_872229.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus 11B] gi|117648141|gb|ABK52243.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus 11B] Length = 163 Score = 43.7 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 4/132 (3%) Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 +V P N G +R A A C+ + + + +G H + Sbjct: 1 MFRLVFVEPRIPPNTGNAIRLAAATGCELHL--VGPLAFDMSDARLRRAGLDYHEFATVV 58 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250 + + + +++P D AL+ G E GL T Sbjct: 59 VHPNMDAAWEVLASGRIFAFTGRAERPYTDVEYRDGDALMFGTERTGLPDSILTDPRITE 118 Query: 251 MAHLHMPGIIKA 262 + M ++ Sbjct: 119 RVRIPMLPGRRS 130 >gi|331006116|ref|ZP_08329450.1| RNA methyltransferase, TrmH family [gamma proteobacterium IMCC1989] gi|330420095|gb|EGG94427.1| RNA methyltransferase, TrmH family [gamma proteobacterium IMCC1989] Length = 136 Score = 43.7 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + I G E L+ + + + ++ G +N++ V LY Sbjct: 69 YKHPARAFYIFGPEDGTLKKEITDLCEDVVYIPTEG---CMNLAATVNVVLYDR 119 >gi|116748593|ref|YP_845280.1| methyltransferase GidB [Syntrophobacter fumaroxidans MPOB] gi|193806435|sp|A0LHE3|RSMG2_SYNFM RecName: Full=Ribosomal RNA small subunit methyltransferase G 2; AltName: Full=16S rRNA 7-methylguanosine methyltransferase 2; Short=16S rRNA m7G methyltransferase 2 gi|116697657|gb|ABK16845.1| methyltransferase GidB [Syntrophobacter fumaroxidans MPOB] Length = 498 Score = 43.7 bits (101), Expect = 0.033, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 86/255 (33%), Gaps = 15/255 (5%) Query: 11 KIFSLKDSHYAKLRRNHRD-YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69 K ++K + K+ + D Y+ ++ SR + + + G V L + Sbjct: 232 KETAMKRHGFRKIESENNDLYRDIRKLLT-SRGIRKQQRALVSGSKQVHETLRDFPDDCL 290 Query: 70 QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 +A + + P + P + + L ++ + + Sbjct: 291 AWIAPGQEMPPPE---GAPGHMSWYQMAPALFETLDVFGTRTPLLLIKVGEIETWDP-VE 346 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 VL DP N+GA++RSA AF +I + + +++ GA+ Sbjct: 347 GFPAGCSVLVPFQDPENVGAVIRSAAAFGAVQVILLRESAHPFHPKALRASGGAVLR--- 403 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 L + + I S + + + + L+ G EG GL + + Sbjct: 404 ---MKLRNGPPLENLPENLPILPLSAEGRDITRHVFPAAFGLLPGLEGPGLPDNWRRKS- 459 Query: 250 SMAHLHMPGIIKALN 264 + + +++LN Sbjct: 460 --FAIPICKDVESLN 472 >gi|229820769|ref|YP_002882295.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM 12333] gi|229566682|gb|ACQ80533.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM 12333] Length = 167 Score = 43.3 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%) Query: 229 IALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKA 262 AL+ GAE GL P+ T + M +++ Sbjct: 100 DALLFGAEPTGLPPEVLADPRLTDRVRIPMLPGLRS 135 >gi|71650732|ref|XP_814058.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70878998|gb|EAN92207.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 409 Score = 43.3 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 32/128 (25%), Gaps = 39/128 (30%) Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +H +L ++ + + L+LG E KGL P+ Sbjct: 265 QHRARGDPCSLEMYAAITIPMHAIMRSGRQPKEETEKGGEPMRRRLLLLGNEDKGLPPEV 324 Query: 245 QETATSMAHLH---MP-------GIIK-----------------------------ALNV 265 + H+ M +LNV Sbjct: 325 VRLCSHAVHIPSPWMQQYEQRWLHHADTTAKKGNCAKGKNGVVLEDDVVLLRPQEVSLNV 384 Query: 266 SNAAAVAL 273 S A+A+ L Sbjct: 385 SAASAIIL 392 >gi|115389798|ref|XP_001212404.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114194800|gb|EAU36500.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 199 Score = 43.3 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 8/73 (10%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW------DANLPHPFPVK--TVPPQTI 101 FLYG V AAL R++++L + A L L PVK + Sbjct: 10 FLYGTSAVEAALRCGRRQLYKLYLYQAADEPLSPAKVVLRKLALSKGIPVKMAFAGWDRL 69 Query: 102 DKIVGKEAVHQGL 114 V H G Sbjct: 70 FDKVSMGRAHNGC 82 >gi|71668065|ref|XP_820976.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70886341|gb|EAN99125.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 408 Score = 43.3 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 39/82 (47%) Query: 231 LILGAEGKGLRPKTQETATSMAHLH---MP-------GIIK------------------- 261 L+LG E +GL P+ + H+ M Sbjct: 311 LLLGNEDRGLPPEVVRLCSHAVHIPSPWMQQYERRWLHHADTTATKGNCAKGKNGVVLED 370 Query: 262 ----------ALNVSNAAAVAL 273 +LNVS A+A+ L Sbjct: 371 DVVLLRPQEVSLNVSAASAIIL 392 >gi|299143770|ref|ZP_07036850.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518255|gb|EFI41994.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 96 Score = 43.3 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 2/81 (2%) Query: 48 NLFLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 ++YG + V L N K++ + + + + + + +D++ Sbjct: 2 KEYVYGRNPVIEILKNKKADKLYVQMGNFEGSMKKIYAMAKEQNILITELNKKKLDELS- 60 Query: 107 KEAVHQGLALETAPLLSPTLD 127 + A HQG+ + TL+ Sbjct: 61 EGANHQGVVALVSGYEYSTLE 81 >gi|167949869|ref|ZP_02536943.1| hypothetical protein Epers_26767 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 120 Score = 43.3 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 2/73 (2%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDWDANLPHPFPVKTVPPQTIDK 103 E + G+H V AL + LL ++A + + + V + +D+ Sbjct: 2 SETQLIIGLHAVRTALKHGDAVTEILLESRRRDARIKEVLNLARQAGLKPRQVEGEELDR 61 Query: 104 IVGKEAVHQGLAL 116 + Sbjct: 62 LAQGRQPPGWWRP 74 >gi|154815977|emb|CAO85681.1| putative 23S rRNA methyltransferase [Clostridium sp.] Length = 165 Score = 43.3 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 4/90 (4%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARL 81 +++ K ++ + +H + + + G V AL + + L+ K N + Sbjct: 12 SKDNNLVKFVRKL-RDKKHRKKEKKFIVEGFRFVEEALKSDYCIEYILINEKSLNKVQEF 70 Query: 82 DWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111 + + + V + + + I G E Sbjct: 71 NINIEVIEN-KVYILNESSFNSISGTENSQ 99 >gi|307108600|gb|EFN56840.1| hypothetical protein CHLNCDRAFT_144422 [Chlorella variabilis] Length = 365 Score = 43.3 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 3/53 (5%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA---LYITQNHF 280 L+ G E GL + + +LN+S+A AV L+ Q Sbjct: 174 LVFGREESGLLESELLLCSHACSIPTGRSQPSLNLSHAVAVVLAQLFDIQQQR 226 >gi|71908729|ref|YP_286316.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB] gi|71848350|gb|AAZ47846.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB] Length = 164 Score = 42.9 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ I G E L+ + ++ G +N++ V LY Sbjct: 104 YQHPERAFYIFGPEDGSLKKNVTSWCKDIVYIPTHG---CMNLAATVNVVLYDRM 155 >gi|313611174|gb|EFR85995.1| putative TrmH family tRNA/rRNA methyltransferase yacO [Listeria monocytogenes FSL F2-208] Length = 86 Score = 42.9 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 6/88 (6%) Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQ 99 + E ++ G + V L + R I ++ + + + V+ VP Q Sbjct: 2 EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60 Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD 127 I+K+V HQG+A + A LD Sbjct: 61 KIEKVVS--GAHQGVAAQVAAYQYAELD 86 >gi|332141307|ref|YP_004427045.1| putative cold-shock RNA methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327551329|gb|AEA98047.1| putative cold-shock RNA methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] Length = 182 Score = 42.9 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +LG E + + ++ +N++ A V LY Sbjct: 106 FEHPENAFYLLGPEDGSIGEDILSWCDHVVYVPTY---SCMNLAATANVLLYDR 156 >gi|322499488|emb|CBZ34561.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 519 Score = 42.9 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Query: 231 LILGAEGKGLRPKTQETA--TSMAHLHM-PGIIKALNVSNAAAVALY 274 +ILG+E +GLR + L + ++ + NVS A +V ++ Sbjct: 422 VILGSEAQGLRGLNGRWGVPYQLVTLPLSNPMVDSFNVSVAGSVLMH 468 >gi|238022622|ref|ZP_04603048.1| hypothetical protein GCWU000324_02531 [Kingella oralis ATCC 51147] gi|237866062|gb|EEP67196.1| hypothetical protein GCWU000324_02531 [Kingella oralis ATCC 51147] Length = 167 Score = 42.5 bits (98), Expect = 0.063, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 2/82 (2%) Query: 17 DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76 ++ + K + ++H + L G H ++A L+ + Q + Sbjct: 51 NTMPPIQSPQNPQLKHLAKILTATKHRREHRQAALEGAHLLAAYLDAGNTP--QQVYIPE 108 Query: 77 ALARLDWDANLPHPFPVKTVPP 98 R A L P + P Sbjct: 109 PKLRQPETATLAARLPENRITP 130 >gi|152995596|ref|YP_001340431.1| tRNA/rRNA methyltransferase SpoU [Marinomonas sp. MWYL1] gi|150836520|gb|ABR70496.1| tRNA/rRNA methyltransferase (SpoU) [Marinomonas sp. MWYL1] Length = 176 Score = 42.5 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +K I G E + K + A + + G +N++ + V LY Sbjct: 96 FNHPEKALYIFGPEDGTIGQKIVDRADFVVFVPTVG---CMNLAASVNVLLYDR 146 >gi|91792898|ref|YP_562549.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella denitrificans OS217] gi|91714900|gb|ABE54826.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella denitrificans OS217] Length = 200 Score = 42.5 bits (98), Expect = 0.066, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + I G E + + A + ++ G +N++ + V LY Sbjct: 116 HFVHPEHAFYIFGPEDGTIPQVLIDAAHEVVYVPTVG---CMNLAASVNVLLYDR 167 >gi|332527885|ref|ZP_08403922.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2] gi|332112462|gb|EGJ12255.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2] Length = 262 Score = 42.5 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 2/88 (2%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 R++ +++ Q + ++L G H AAL R Q L +A + Sbjct: 9 SRDNPLLARVRRLAQDGNAYRRVGQVWLEGDHLC-AALRARGRPAAQALVAVSAWEQGGA 67 Query: 84 DANLPHPFP-VKTVPPQTIDKIVGKEAV 110 +L V V G E+ Sbjct: 68 LRDLAGWAQAVAVVDDALFAAASGLESP 95 >gi|293372858|ref|ZP_06619232.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|292632147|gb|EFF50751.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] Length = 104 Score = 42.5 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 6/84 (7%) Query: 47 ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103 ++ ++GV V AL I ++L K+ + L + PV+ VP + I++ Sbjct: 4 KSEMIFGVRAVIEALQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62 Query: 104 IVGKEAVHQGLALETAPLLSPTLD 127 I HQG+ + + + Sbjct: 63 IT--RKNHQGVIAFISSVTYQKAE 84 >gi|90411824|ref|ZP_01219833.1| putative RNA methyltransferase, TrmH family protein [Photobacterium profundum 3TCK] gi|90327386|gb|EAS43750.1| putative RNA methyltransferase, TrmH family protein [Photobacterium profundum 3TCK] Length = 157 Score = 42.5 bits (98), Expect = 0.070, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ I G E L+ + + ++ G +N++ A V LY Sbjct: 94 YKHPERAFYIFGPEDGTLKKEITDFCRDTIYVPTKG---CMNLAAAVNVILYDRM 145 >gi|54308633|ref|YP_129653.1| TrmH family RNA methyltransferase [Photobacterium profundum SS9] gi|46913062|emb|CAG19851.1| putative RNA methyltransferase, TrmH family [Photobacterium profundum SS9] Length = 157 Score = 42.5 bits (98), Expect = 0.070, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 ++ I G E L+ + + ++ G +N++ A V LY Sbjct: 94 YKHPERAFYIFGPEDGTLKKEITDFCRDTIYVPTKG---CMNLAAAVNVILYDRM 145 >gi|239997256|ref|ZP_04717780.1| putative cold-shock RNA methyltransferase [Alteromonas macleodii ATCC 27126] Length = 169 Score = 42.5 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 +LG E + + ++ +N++ A V LY Sbjct: 93 FEHPSNAFYLLGPEDGSIGEDVLSWCDHVVYVPT---FSCMNLAATANVLLYDR 143 >gi|154334197|ref|XP_001563350.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060366|emb|CAM37527.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 526 Score = 42.5 bits (98), Expect = 0.073, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 4/49 (8%) Query: 229 IALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + + GAE L + + + G ++N++ V LY Sbjct: 439 VFYVFGAEDGTLSAHHLQHDVDDVVFIPTTG---SMNLAATVNVLLYDR 484 >gi|124027746|ref|YP_001013065.1| hypothetical protein Hbut_0870 [Hyperthermus butylicus DSM 5456] gi|123978440|gb|ABM80721.1| hypothetical protein Hbut_0870 [Hyperthermus butylicus DSM 5456] Length = 154 Score = 42.1 bits (97), Expect = 0.084, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 7/57 (12%) Query: 227 DKIALILGAEGKGLRPKTQETATS---MAHLHMPGIIK--ALNVSNAAAVALYITQN 278 +K ALI+GAE G+ E + + + ++ + NV + +ALY + Sbjct: 89 EKTALIIGAEDYGIPRTVLEKIPEPRDLVVIPV--GVEGMSYNVVASLVMALYELKR 143 >gi|254874998|ref|ZP_05247708.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|254840997|gb|EET19433.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] Length = 213 Score = 42.1 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 58/161 (36%), Gaps = 11/161 (6%) Query: 26 NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD 84 + + YK+++ + S+ + + + G+ AL P ++I +L T+ A Sbjct: 5 SQKLYKEIKKLH-SSQGRKKSQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPL 63 Query: 85 ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144 + + + + + L + ++VLD + DP Sbjct: 64 NKK------YIITEKDFEALSQTQNPQGVL---ILAEKPKLEQLSFDDDFILVLDRIQDP 114 Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 NIG ILR+A+A +I + ++ GA Sbjct: 115 GNIGTILRTAIAVGLKEVILINDTVDPFNPKAIRAGMGAQF 155 >gi|330446283|ref|ZP_08309935.1| spoU rRNA Methylase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490474|dbj|GAA04432.1| spoU rRNA Methylase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 155 Score = 42.1 bits (97), Expect = 0.087, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + I G E L+ + ++ G +N++ A V LY Sbjct: 94 YKHPKRAFYIFGPEDGTLKKDITDFCRETIYVPTKG---CMNLAAAVNVILYDR 144 >gi|153001281|ref|YP_001366962.1| tRNA/rRNA methyltransferase SpoU [Shewanella baltica OS185] gi|151365899|gb|ABS08899.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS185] Length = 241 Score = 42.1 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + K + G E + + + A ++ ++ G +N++ + V LY Sbjct: 118 FVHPAKAFYVFGPEDGTIGQEIIDKANAVVYVPTVG---CMNLAASVNVLLYDR 168 >gi|332289500|ref|YP_004420352.1| putative methyltransferase [Gallibacterium anatis UMN179] gi|330432396|gb|AEC17455.1| putative methyltransferase [Gallibacterium anatis UMN179] Length = 357 Score = 42.1 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 82/269 (30%), Gaps = 29/269 (10%) Query: 23 LRRNHRDYKKMQSFNQKSR-----HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77 ++ N K + R ++ E + +YG A + + I +L T+ Sbjct: 95 IKSNVPQQKVKKKGALSPRAPENIRQNRAEEVKVYGEAACFALFEHRPQDIVRLWVTQEL 154 Query: 78 LARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS----PTLDAVRNS 132 + + L V ++V H G+ L L+ + Sbjct: 155 TKKAGEMMSYLAENKKAYHVVKGDELQLVSGTEHHGGICLLVKKRPPLMLKSYLETPKKR 214 Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192 ++VLD + + NIG +L++ + ++T K + A + + G + Sbjct: 215 DCIVVLDGIGNAANIGGVLKTLAFYGVQNVVTDKIDAVQSPAAMRVAEGGIEYLRLFEVA 274 Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 + S L + DK+A++ L T + Sbjct: 275 HPTLALDLLKQAGYQLIRASLSKQAIALNKLELQDKVAIV-------LSENTIKDLDPEV 327 Query: 253 HLHMPGIIKA--------LNVSNAAAVAL 273 + + LNV+ A V L Sbjct: 328 T----NVALSTTNPLATGLNVAVTAGVLL 352 >gi|312113941|ref|YP_004011537.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC 17100] gi|311219070|gb|ADP70438.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC 17100] Length = 263 Score = 42.1 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 20/51 (39%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 + ++ G E GL A ++ + +LN++ + + Y + Sbjct: 115 RCGVLFGKERTGLENSDVAIADAIMTAPVDPAFASLNLAQSVLLFAYEWRK 165 >gi|15811191|gb|AAL08856.1|AF308680_1 unknown [Ehrlichia ruminantium] Length = 99 Score = 42.1 bits (97), Expect = 0.097, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTIDKIV 105 +YG H AAL N +RK +LL T+N + + + K V TI+ ++ Sbjct: 1 IYGKHPCVAALQNINRKCHELLVTENFIKHNNGIQKIRELSKQKNIYPKQVNINTINSVL 60 Query: 106 GKEAVHQGLALETAPLLSPTLD 127 + HQG+AL+ + + + +++ Sbjct: 61 PPNSNHQGIALQVSIVDTVSIE 82 >gi|2274931|emb|CAA74647.1| hypothetical protein X [Eubacterium acidaminophilum] Length = 25 Score = 41.7 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 6/19 (31%), Positives = 11/19 (57%) Query: 262 ALNVSNAAAVALYITQNHF 280 +LN+SN+ A+ +Y Sbjct: 1 SLNLSNSVAIVVYEALRQL 19 >gi|149909608|ref|ZP_01898261.1| 23S rRNA methyltransferase [Moritella sp. PE36] gi|149807312|gb|EDM67265.1| 23S rRNA methyltransferase [Moritella sp. PE36] Length = 172 Score = 41.7 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 D + I G E + K + A+++ ++ G +N++ V LY Sbjct: 91 FEHPDNVIYIFGPEDGTIDQKVIDRASAVVYVPTVG---CMNLAATVNVLLYDR 141 >gi|164604788|gb|ABY61955.1| putative rRNA methylase YibK [Haemophilus influenzae] Length = 37 Score = 41.7 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 7/25 (28%), Positives = 13/25 (52%) Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280 M +++N+SN+ AV +Y Sbjct: 1 MTANSRSMNLSNSVAVTVYEAWRQL 25 >gi|169837950|ref|ZP_02871138.1| hypothetical protein cdivTM_12794 [candidate division TM7 single-cell isolate TM7a] Length = 35 Score = 41.7 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 12/24 (50%) Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274 + G +++NV A+ + LY Sbjct: 1 TIFIPQRGSTRSVNVGVASGIVLY 24 >gi|213052274|ref|ZP_03345152.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 127 Score = 41.7 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 10/122 (8%) Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKI 104 + +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 2 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61 Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158 AVHQG+ P L A+ + L++LD V DPHN+GA LRSA A Sbjct: 62 SD-GAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAG 120 Query: 159 CD 160 Sbjct: 121 VH 122 >gi|72391682|ref|XP_846135.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62359056|gb|AAX79504.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70802671|gb|AAZ12576.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 391 Score = 41.7 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 K + L+LG EG GL + T AH+ + Sbjct: 283 CGPVNKPRRRLLLLGNEGAGLPSEVMGLCTHTAHIPLAPE 322 >gi|239617839|ref|YP_002941161.1| hypothetical protein Kole_1465 [Kosmotoga olearia TBF 19.5.1] gi|239506670|gb|ACR80157.1| conserved hypothetical protein [Kosmotoga olearia TBF 19.5.1] Length = 188 Score = 41.7 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 6/51 (11%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN-VSN--AAAVAL 273 + + G GL + + + G + N +S A A+ L Sbjct: 133 KEPFLFLFGT-SWGLPKEILDLCDYALE-PIRGNA-SFNHLSVRAAVAIIL 180 >gi|20094038|ref|NP_613885.1| hypothetical protein MK0600 [Methanopyrus kandleri AV19] gi|19887015|gb|AAM01815.1| Uncharacterized protein conserved in archaea [Methanopyrus kandleri AV19] Length = 157 Score = 41.4 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 7/56 (12%) Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS-N-AAAVALYITQNHFAK 282 + + G+ GL + E ++ G + NV A A+ L+ + + Sbjct: 107 VCFVFGSARPGLTKQELELGDEAVYV---GTER--NVGEVGAVAILLHELRKRLNQ 157 >gi|302835032|ref|XP_002949078.1| hypothetical protein VOLCADRAFT_104150 [Volvox carteri f. nagariensis] gi|300265823|gb|EFJ50013.1| hypothetical protein VOLCADRAFT_104150 [Volvox carteri f. nagariensis] Length = 393 Score = 41.4 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 18/50 (36%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ G E GL + A + + LN++ A +Y N Sbjct: 230 VLFGREASGLTNEEVAAANKVLCIEAHPDYPVLNLAQAVLCTVYELYNAR 279 >gi|261329707|emb|CBH12689.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 391 Score = 41.4 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%) Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 K + L+LG EG GL + T AH+ + Sbjct: 283 CGPVNKPRRRLLLLGNEGAGLPSEVMGLCTHTAHIPLAPE 322 >gi|221134597|ref|ZP_03560900.1| putative cold-shock RNA methyltransferase [Glaciecola sp. HTCC2999] Length = 166 Score = 41.4 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + ILG E + + ETA ++ ++ ++N+ V LY Sbjct: 91 FTHPENAYYILGPEDGSVPIEIVETADAVVYVPTFN---SMNLGATGNVILYDR 141 >gi|149019401|ref|ZP_01834763.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP23-BS72] gi|147931271|gb|EDK82250.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP23-BS72] Length = 81 Score = 41.4 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 48 NLFLYGVHTVSAA-LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106 N +YGVH V+ A L N K++ + + + +++ ++ Sbjct: 4 NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62 Query: 107 KEAVHQGLALET 118 + AVHQG E Sbjct: 63 EGAVHQGFVYEC 74 >gi|68491121|ref|XP_710624.1| potential mitochondrial ribosomal RNA methylase [Candida albicans SC5314] gi|46431850|gb|EAK91373.1| potential mitochondrial ribosomal RNA methylase [Candida albicans SC5314] Length = 396 Score = 41.4 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 16/119 (13%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN----------------LFLYGV 54 KI K + R + + K ++ + +++G Sbjct: 101 KIAHEKSLQEKAYQERERARELAREAKGKGKNFKSGGSSNYDTGVMVDRNDTIFDYVFGT 160 Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 H V A L R+I L N + A + K + + I+ K VH G Sbjct: 161 HPVKAVLMAGKRRILDLYTFNNEDPDIVKLAMEKYGIVPKRLKDKNALNILCKNGVHNG 219 >gi|154253023|ref|YP_001413847.1| RNA methyltransferase [Parvibaculum lavamentivorans DS-1] gi|154156973|gb|ABS64190.1| RNA methyltransferase, TrmH family, group 1 [Parvibaculum lavamentivorans DS-1] Length = 262 Score = 41.4 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 18/48 (37%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 L+ G E GL A ++ + + +LN++ + Y Sbjct: 126 LLFGPERTGLENDDIVLADALMMVPVNPAFASLNLAQCVLLMSYEWHK 173 >gi|330503997|ref|YP_004380866.1| RNA methyltransferase [Pseudomonas mendocina NK-01] gi|328918283|gb|AEB59114.1| RNA methyltransferase, putative [Pseudomonas mendocina NK-01] Length = 223 Score = 41.4 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 4/55 (7%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETAT-SMAHLHMPGIIKALNVSNAAAVALYIT 276 D+ I G E L+ + + + ++ G +N++ V LY Sbjct: 159 YTHPDRALYIFGPEDGSLQQEILDWCAGEVVYIPTQG---CMNLAATVNVVLYDR 210 >gi|229822119|ref|YP_002883645.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM 12333] gi|229568032|gb|ACQ81883.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM 12333] Length = 222 Score = 41.4 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 17/40 (42%) Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 L+ G EG GL E A + H+ G +++N Sbjct: 160 LPRACVLLFGQEGAGLTADALEAAAEVRHITQFGSTRSVN 199 >gi|328716878|ref|XP_001950343.2| PREDICTED: NFX1-type zinc finger-containing protein 1-like [Acyrthosiphon pisum] Length = 1999 Score = 41.4 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 20/179 (11%), Positives = 30/179 (16%), Gaps = 1/179 (0%) Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L I+ L K+ R D L D +G + L Sbjct: 1495 LACGHNSIWVLCCDKDKEFRPDSQYLLDKCREPCLQKLNCNDICLGTCGECKQGRLHIPC 1554 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 N P N I + + Sbjct: 1555 SDICNKIYSCNHICKFPCKEQCPPCNQKCIYSCVHSRCTRLCGNPCVPCKEKCEWKCPHL 1614 Query: 181 SGAL-EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 H R K+ + + +I G E Sbjct: 1615 VCTRKCHELCDRKPCFEHCTIKLKCGHECIGFCGEPCPPLCRICQEYEVTTIIFGNEDD 1673 >gi|309798987|ref|ZP_07693244.1| possible rRNA/tRNA methylase [Streptococcus infantis SK1302] gi|308117391|gb|EFO54810.1| possible rRNA/tRNA methylase [Streptococcus infantis SK1302] Length = 108 Score = 41.4 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 11/107 (10%) Query: 30 YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 K + +QK ++ + G H A+ + KI ++ A +L Sbjct: 2 VKNAKKLHQK-KYRKTS--YLIEGWHLFEEAVQAGA-KIEKIFALVEYGDKLV------- 50 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136 +P + I + QG+ D + L + Sbjct: 51 DYPQTVFVTEEILLDLADSQTPQGIVAIVQKEEDQLPDLSQGKYLFL 97 >gi|159480144|ref|XP_001698144.1| hypothetical protein CHLREDRAFT_120803 [Chlamydomonas reinhardtii] gi|158273642|gb|EDO99429.1| predicted protein [Chlamydomonas reinhardtii] Length = 154 Score = 41.4 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 4/48 (8%) Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YIT 276 L+ G E GL + A + + + LN++ A + Y Sbjct: 109 LMFGRESSGLTNEEVALANKVLTIEANPVYPVLNLAQA--IVCVSYEL 154 >gi|320169042|gb|EFW45941.1| CLEC16A [Capsaspora owczarzaki ATCC 30864] Length = 1088 Score = 41.4 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 21/219 (9%), Positives = 58/219 (26%), Gaps = 11/219 (5%) Query: 36 FNQKSRHTSQPENLFLYGVHTVSAAL---NNPSRKIFQLLATKNALARLDWDANLPHPFP 92 + ++ T Q ++L + + +++ L + ++F KN L+ Sbjct: 28 LAKNAKVTEQNKSLVVETLRSMAEILIWGDQNDNRVFDFFLEKNILSFFLKILAQNTGRY 87 Query: 93 VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152 VK QT+ + + + L + +++ +D + + Sbjct: 88 VKVQLLQTLSILFENISN--------ETSIYYLLSNNHINAIIVHKFDFSDEEVLAYYIS 139 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 S T + +E + A++ + + Sbjct: 140 FLKTLSLKLNTHTIHFFFNEHLHDFPLYTEAIKFFNHHESMVRIAVRTLTLNVYRVPDNH 199 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + +G + L + A + Sbjct: 200 MLTFILNKTTVPYLSNLVWFIGNQSIELDECVRNDADHL 238 >gi|328716886|ref|XP_001950310.2| PREDICTED: NFX1-type zinc finger-containing protein 1-like [Acyrthosiphon pisum] Length = 1870 Score = 41.4 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 17/179 (9%), Positives = 34/179 (18%), Gaps = 1/179 (0%) Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L ++ L K+ ++D L D +G + L Sbjct: 1342 LACGHNSVWVLCRDKDKEFKMDSQYLLDKCREPCLQKLNCNDVCLGTCGECKQGRLHVPC 1401 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 N P N I + + K Sbjct: 1402 SEICNKINPCNHTCKFPCKERCPPCNQKCIYSCVHSRCSKVCGQQCVPCKEKCEWKCKHL 1461 Query: 181 SGAL-EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238 + R K+ +++ ++ G E + Sbjct: 1462 KCTRKCYDLCNRKPCYEPCSLKLKCGHECIGYCGEPCPPLCRICQEDEVTTIVFGNEDE 1520 >gi|257482401|ref|ZP_05636442.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 112 Score = 41.4 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ + + R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAPLLSP 124 VHQG+ + +P Sbjct: 67 VHQGVVADVSPSQVW 81 >gi|68491148|ref|XP_710610.1| potential mitochondrial ribosomal RNA methylase [Candida albicans SC5314] gi|46431834|gb|EAK91358.1| potential mitochondrial ribosomal RNA methylase [Candida albicans SC5314] Length = 396 Score = 41.4 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 16/119 (13%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN----------------LFLYGV 54 KI K + R + + K ++ + +++G Sbjct: 101 KIAHEKSLQEKAYQERERARELAREAKGKGKNFKSGGSSNYDTGVMVDRNDTIFDYVFGT 160 Query: 55 HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113 H V A L R+I L N + A + K + + I+ K VH G Sbjct: 161 HPVKAVLMAGKRRILDLYTFNNEDPDIVKLAMEKYGIIPKRLKDKNALNILCKNGVHNG 219 >gi|148981772|ref|ZP_01816520.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3] gi|145960739|gb|EDK26078.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3] Length = 160 Score = 41.0 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + I G E L+ + + ++ G +N++ + V LY Sbjct: 99 YKHPPRAFYIFGPEDGTLKKEITDFCRDTIYVPTNG---CMNLAASVNVVLYDR 149 >gi|328716888|ref|XP_001949997.2| PREDICTED: NFX1-type zinc finger-containing protein 1-like [Acyrthosiphon pisum] Length = 1820 Score = 41.0 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 21/177 (11%), Positives = 36/177 (20%), Gaps = 1/177 (0%) Query: 61 LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 L +++ L K+ RLD L + +G + + Sbjct: 1384 LACGHNQVWVLCCDKDKEFRLDSQYILDKCREPCLQKLNCNNICLGTCGECKQGRIHVPC 1443 Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 N P N I + + Sbjct: 1444 SEICNKINPCNHTCKFPCKERCPPCNQKCIFSCLHSTCSRLCGNACVPCKEKCEWKCPHL 1503 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAE 236 + G + IG + PL + DK + G E Sbjct: 1504 ECTRKCYEICNRRPCYKPCALKLICGHECIGFCGEPCPPLCRICPRDKVTTTVFGNE 1560 >gi|301100565|ref|XP_002899372.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262104016|gb|EEY62068.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 135 Score = 41.0 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 8/29 (27%), Positives = 15/29 (51%) Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273 A ++ + G ++LN+S A A+ L Sbjct: 2 LRAAHRRVYMPLFGFSESLNLSVATALVL 30 >gi|163804021|ref|ZP_02197833.1| rRNA methylase, SpoU family protein [Vibrio sp. AND4] gi|159172168|gb|EDP57090.1| rRNA methylase, SpoU family protein [Vibrio sp. AND4] Length = 27 Score = 41.0 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 6/20 (30%), Positives = 11/20 (55%) Query: 260 IKALNVSNAAAVALYITQNH 279 ++LN+SNA A+ + Sbjct: 1 ARSLNLSNAVAIIAFEAWRQ 20 >gi|91775316|ref|YP_545072.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT] gi|91709303|gb|ABE49231.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT] Length = 53 Score = 40.6 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 18/40 (45%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63 R++ +K+++ +R + L G H ++A + Sbjct: 12 SRDNSLFKQLKKLADNARERRKHNETLLDGPHLLTAYMEA 51 >gi|23007926|ref|ZP_00049585.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1] Length = 135 Score = 40.6 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 16/34 (47%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259 L LGAEGKGLR +T E + + G Sbjct: 98 RRPAVLALGAEGKGLRQRTTECCDVLVRIDDRGS 131 >gi|289672600|ref|ZP_06493490.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. syringae FF5] Length = 101 Score = 40.6 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 51 LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109 +YGVH V A L + +++ + + R+ L V + + E Sbjct: 7 IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWVEG 66 Query: 110 VHQGLALETAPLLSP 124 VHQG+ + +P Sbjct: 67 VHQGVVADVSPSQVW 81 >gi|149053706|gb|EDM05523.1| similar to hypothetical protein FLJ22578 (predicted), isoform CRA_b [Rattus norvegicus] Length = 221 Score = 40.2 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 13/151 (8%) Query: 46 PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-----ARLDWDANLPHPFPVKTVPPQT 100 L+GV AL R + +LL PV Q Sbjct: 45 QRLERLFGVSPCLLALRAARRHVARLLLQAGKAGLQGERAELLRVAEARGIPVLRPRRQK 104 Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRS 153 +D + G + VHQG+ +E + L D QL +VL+ + DP N+GA++RS Sbjct: 105 LDALCGYQ-VHQGVCMEVSRLRPRPCDEAADTSSGDDPQQLWLVLEGIQDPRNLGAVMRS 163 Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 A D +IT++R S + V++K+++GA+ Sbjct: 164 AYFLGVDRVITSRRNSCPLTPVVSKASAGAM 194 >gi|255099811|ref|ZP_05328788.1| putative RNA methylase [Clostridium difficile QCD-63q42] Length = 88 Score = 40.2 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 8/81 (9%), Positives = 25/81 (30%), Gaps = 1/81 (1%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 +++ K ++ KS++ ++ + G V AL + + + + + Sbjct: 7 SKDNEKLKYTRALL-KSKNRNKESKFIIEGYRVVMLALECMANLDYVFINEEFENKKEHV 65 Query: 84 DANLPHPFPVKTVPPQTIDKI 104 + I + Sbjct: 66 KLLEDLDKKTQRYTRLLIKTL 86 >gi|260814894|ref|XP_002602148.1| hypothetical protein BRAFLDRAFT_234265 [Branchiostoma floridae] gi|229287455|gb|EEN58160.1| hypothetical protein BRAFLDRAFT_234265 [Branchiostoma floridae] Length = 215 Score = 40.2 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 7/131 (5%), Positives = 14/131 (10%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 I + + ++ I L Sbjct: 5 IYWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTC 64 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ + I W T Sbjct: 65 IHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTC 124 Query: 221 EQEIKNDKIAL 231 L Sbjct: 125 IHWWWWIFTCL 135 Score = 38.3 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 8/133 (6%), Positives = 19/133 (14%) Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 + G L + ++ I + Sbjct: 15 LHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTC 74 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 ++ + I WG T Sbjct: 75 LHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTC 134 Query: 221 EQEIKNDKIALIL 233 + ++L Sbjct: 135 LHWCSRGDLHMLL 147 Score = 37.5 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 4/129 (3%), Positives = 8/129 (6%), Gaps = 1/129 (0%) Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162 + + D Sbjct: 86 HWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWW-WWIFTCLHWCSRGDLH 144 Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222 + Y G I + Sbjct: 145 MLLNIYWCWGIFTCVHWCWGIFTCIHWWWWIFTCLHWCWGIFTCVHWCWGIFTCIHWWWW 204 Query: 223 EIKNDKIAL 231 Sbjct: 205 IFTCLHWCW 213 Score = 36.0 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 6/124 (4%), Positives = 14/124 (11%) Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167 L + ++ I + Sbjct: 2 FTCIYWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGI 61 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227 ++ + I WG T Sbjct: 62 FTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGI 121 Query: 228 KIAL 231 + Sbjct: 122 FTCI 125 >gi|322497647|emb|CBZ32721.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 489 Score = 39.8 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 4/49 (8%) Query: 229 IALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +LGAE L + + + G ++N++ V LY Sbjct: 402 VFYVLGAEDGTLSAHHVQHDVDDVVFIPTTG---SMNLAATVNVLLYDR 447 >gi|322489661|emb|CBZ24920.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 508 Score = 39.8 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 4/49 (8%) Query: 229 IALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +LGAE L + + + G ++N++ V LY Sbjct: 421 VFYVLGAEDGTLSAHHVQHDVDDVVFIPTTG---SMNLAATVNVLLYDR 466 >gi|146081402|ref|XP_001464243.1| hypothetical protein [Leishmania infantum JPCM5] gi|134068334|emb|CAM66621.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 489 Score = 39.8 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 4/49 (8%) Query: 229 IALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + +LGAE L + + + G ++N++ V LY Sbjct: 402 VFYVLGAEDGTLSAHHVQHDVDDVVFIPTTG---SMNLAATVNVLLYDR 447 >gi|222628624|gb|EEE60756.1| hypothetical protein OsJ_14313 [Oryza sativa Japonica Group] Length = 783 Score = 39.8 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 12/203 (5%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTV 96 R S ++ GV+ V++++ N + + ++L KN + V+ V Sbjct: 380 PRSRSAEGQ-WIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENARRKGIDVRKV 438 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGA 149 Q +D VG HQG+A A + + + LL+VLD V DPHN+GA Sbjct: 439 NSQALDG-VGGSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGA 497 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 LRSA A +I K S + +A + K+++GA + IP + ++NL+ L+ + G Sbjct: 498 CLRSAAAAGATAVIIPKDKSATVNATVRKTSAGAADLIPVVAVTNLSRCLKDLQKQGVWI 557 Query: 210 IGLSSDSKKPLEQEIKNDKIALI 232 GL+ ++ L Q IALI Sbjct: 558 YGLAGEATASLYQLDLKGNIALI 580 >gi|156083591|ref|XP_001609279.1| hypothetical protein [Babesia bovis T2Bo] gi|154796530|gb|EDO05711.1| conserved hypothetical protein [Babesia bovis] Length = 285 Score = 39.8 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 52/165 (31%), Gaps = 5/165 (3%) Query: 12 IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71 IF A R + K + S + + + + L + + Sbjct: 95 IFHPNPLCVATPSRKNAIIKHLWRLRVNSSYRKHQDTRLVTSGDVILHMLRHTDCVFGNI 154 Query: 72 LATKNALARLDW--DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129 T+ +L L + ++ + + + + E Sbjct: 155 FTTRKSLVELILGDSSLRSRFGRIQLLDRHLLRYCLRGTSTTSDSIAEVTIPNP---SIP 211 Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 N ++++ LD++ P N+G I+R A+ + DGI + + Sbjct: 212 SNPRVVIALDNIRYPQNVGNIIRIAIGLNVDGIYYLRGTADPFDW 256 >gi|254884406|ref|ZP_05257116.1| malic enzyme [Bacteroides sp. 4_3_47FAA] gi|294778121|ref|ZP_06743552.1| malate dehydrogenase (oxaloacetate-decarboxylating) [Bacteroides vulgatus PC510] gi|319642468|ref|ZP_07997119.1| NADP-dependent malate dehydrogenase [Bacteroides sp. 3_1_40A] gi|254837199|gb|EET17508.1| malic enzyme [Bacteroides sp. 4_3_47FAA] gi|294447980|gb|EFG16549.1| malate dehydrogenase (oxaloacetate-decarboxylating) [Bacteroides vulgatus PC510] gi|317385924|gb|EFV66852.1| NADP-dependent malate dehydrogenase [Bacteroides sp. 3_1_40A] Length = 761 Score = 39.4 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 72/262 (27%), Gaps = 21/262 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHT--VS 58 M +K+ I + ++ +LR K+ ++ +F G+H + Sbjct: 400 MESGVARKN--ITDWE-AYKTRLRELMGQESKLTRQLYETARRDPQRVVFAEGIHPTMLK 456 Query: 59 AALNNPSRKIF--QLLATKNALARLDWDANL-PHPFPVKTV-------PPQTIDKIVGKE 108 AA+ + I LL + +L + +L + + + +I+ ++ Sbjct: 457 AAVEAKAEGICHPILLGNDERIEKLAKELDLSLEGIEIINLRHDREAERRERYARILSEK 516 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 QG L+ + + + + I + Sbjct: 517 RARQGANLQESNDKMFERNYFGMMMVETGEADAFITGLYTKYSNTIKVAKEVIGIQPEYK 576 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 +L I TD L + +T+ + + N Sbjct: 577 HFGTMHILNSKKGTYFVADTLINRHPDTDTLIDIAKLSKKTVEFFNHTPTMAMLSYSN-- 634 Query: 229 IALILGAEGKGLRPKTQETATS 250 G++ +G K + Sbjct: 635 ----FGSDTEGSPAKVHDAVDY 652 >gi|150002845|ref|YP_001297589.1| malic enzyme [Bacteroides vulgatus ATCC 8482] gi|149931269|gb|ABR37967.1| NADP-dependent malate dehydrogenase [Bacteroides vulgatus ATCC 8482] Length = 761 Score = 39.4 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 72/262 (27%), Gaps = 21/262 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHT--VS 58 M +K+ I + ++ +LR K+ ++ +F G+H + Sbjct: 400 MESGVARKN--ITDWE-AYKTRLRELMGQESKLTRQLYETARRDPQRVVFAEGIHPTMLK 456 Query: 59 AALNNPSRKIF--QLLATKNALARLDWDANL-PHPFPVKTV-------PPQTIDKIVGKE 108 AA+ + I LL + +L + +L + + + +I+ ++ Sbjct: 457 AAVEAKAEGICHPILLGNDERIEKLAKELDLSLEGIEIINLRHDREAERRERYARILSEK 516 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 QG L+ + + + + I + Sbjct: 517 RARQGANLQESNDKMFERNYFGMMMVETGEADAFITGLYTKYSNTIKVAKEVIGIQPEYK 576 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 +L I TD L + +T+ + + N Sbjct: 577 HFGTMHILNSKKGTYFVADTLINRHPDTDTLIDIAKLSKKTVEFFNHTPTMAMLSYSN-- 634 Query: 229 IALILGAEGKGLRPKTQETATS 250 G++ +G K + Sbjct: 635 ----FGSDTEGSPAKVHDAVDY 652 >gi|212690731|ref|ZP_03298859.1| hypothetical protein BACDOR_00218 [Bacteroides dorei DSM 17855] gi|265754399|ref|ZP_06089588.1| malic enzyme [Bacteroides sp. 3_1_33FAA] gi|212666705|gb|EEB27277.1| hypothetical protein BACDOR_00218 [Bacteroides dorei DSM 17855] gi|263235108|gb|EEZ20663.1| malic enzyme [Bacteroides sp. 3_1_33FAA] Length = 761 Score = 39.4 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 74/262 (28%), Gaps = 21/262 (8%) Query: 1 MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHT--VS 58 M +K+ I + + ++ +LR K+ ++ + +F G+H + Sbjct: 400 MESGVARKN--ITNWE-AYKTRLRELMGQESKLTRQLYETARRAPQRVVFAEGIHPTMLK 456 Query: 59 AALNNPSRKIF--QLLATKNALARLDWDANL-PHPFPVKTV-------PPQTIDKIVGKE 108 AA+ + I LL + +L + +L + + + +I+ ++ Sbjct: 457 AAVEAKAEGICHPILLGNDERIEKLAKELDLSLEGIEIINLRHDREAERRERYARILSEK 516 Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 QG L+ + + + + I + Sbjct: 517 RARQGANLQESNDKMFERNYFGMMMVETGEADAFITGLYTKYSNTIKVAKEVIGIQPEYK 576 Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228 +L I TD L + +T+ + + N Sbjct: 577 HFGTMHILNSKKGTYFVADTLINRHPDTDTLIDIAKLSKKTVEFFNHTPTMAMLSYSN-- 634 Query: 229 IALILGAEGKGLRPKTQETATS 250 G++ +G K + Sbjct: 635 ----FGSDTEGSPAKVHDAVDY 652 >gi|157866535|ref|XP_001687659.1| hypothetical protein [Leishmania major strain Friedlin] gi|68125273|emb|CAJ02933.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 488 Score = 39.4 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 4/49 (8%) Query: 229 IALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + ILGAE L + + + G ++N++ V LY Sbjct: 401 VFYILGAEDGTLSAHHVQHDVDDVVFIPTTG---SMNLAATVNVLLYDR 446 >gi|120611002|ref|YP_970680.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1] gi|120589466|gb|ABM32906.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1] Length = 162 Score = 39.4 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 Q + ++ ILG E L + + + + +N++ V LY Sbjct: 88 QFVHPERAFYILGPEDGSLPAEIVQQCRHVVFVPTRF---CMNLAATVNVLLYDR 139 >gi|221199483|ref|ZP_03572527.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2M] gi|221180768|gb|EEE13171.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2M] Length = 171 Score = 39.4 bits (90), Expect = 0.63, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 3/54 (5%) Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 + I G E + + + ++ +N++ A V LY Sbjct: 111 FKHPESAFYIFGPEDGSVPNQIVAKCRDVVYVPT---AYCMNLAAAVNVLLYDR 161 >gi|221205615|ref|ZP_03578630.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2] gi|221174453|gb|EEE06885.1| tRNA/rRNA methyltransferase