RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] (282 letters) >gnl|CDD|129290 TIGR00186, rRNA_methyl_3, rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases. Length = 237 Score = 155 bits (393), Expect = 1e-38 Identities = 76/244 (31%), Positives = 125/244 (51%), Gaps = 34/244 (13%) Query: 50 FLYGVHTVSAALNNPSR-------------KIFQLLATKNALARLDWDANLPHPFPVKTV 96 +LYG + V AL N R K+ QL + ++ V Sbjct: 3 YLYGKNAVLEALLNQQRVFILKGLESKRLKKLIQLAKKQGI--------------NIQLV 48 Query: 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAI 150 Q +D++ K HQG+A + P+L L+ + + L++LD + DPHN+GAI Sbjct: 49 DRQKLDQLT-KGGNHQGIAAKVKPILYKDLNDLYKTAKSKKQPFLLILDEITDPHNLGAI 107 Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210 LR+A AF DG+I KR S ++ + K++SGA+E++P R++NL+ + K+ GF T+ Sbjct: 108 LRTAEAFGVDGVILPKRRSAPLNSTVVKTSSGAVEYVPLARVTNLSRTITKLKESGFWTV 167 Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270 G D++ L Q +AL++G EG+G+ +E + + M G + +LNVS AA Sbjct: 168 GTDLDAQDTLYQVKLTKPLALVVGNEGEGVSRLIKENCDFLIKIPMAGKVDSLNVSVAAG 227 Query: 271 VALY 274 + L+ Sbjct: 228 ILLF 231 >gnl|CDD|183021 PRK11181, PRK11181, 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional. Length = 244 Score = 113 bits (284), Expect = 6e-26 Identities = 71/242 (29%), Positives = 110/242 (45%), Gaps = 26/242 (10%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPP 98 +YG+H V A L + ++ K N L ++ Sbjct: 4 IIYGIHAVQALLERAPERFIEVFVLKGREDKRLLPLINELEAQG--------IVIQLANR 55 Query: 99 QTIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILR 152 QT+D+ + AVHQG+ P L L + S L++LD V DPHN+GA LR Sbjct: 56 QTLDEKA-EGAVHQGIIARVKPGRQLQENDLPDLLASLEQPFLLILDGVTDPHNLGACLR 114 Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212 SA A +I K S +A K A GA E +P IR++NL ++ + +G Sbjct: 115 SADAAGVHAVIVPKDRSAQLNATAKKVACGAAETVPLIRVTNLARTMRMLQEKNIWIVGT 174 Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 + ++ L Q +AL++GAEG+G+R T+E + + M G + +LNVS A + Sbjct: 175 AGEADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGIC 234 Query: 273 LY 274 L+ Sbjct: 235 LF 236 >gnl|CDD|182790 PRK10864, PRK10864, putative methyltransferase; Provisional. Length = 346 Score = 81.0 bits (200), Expect = 3e-16 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 3/147 (2%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 ++ L+ V +PHN+G I+RS F G++ + ES ++A G EH+ I + Sbjct: 200 VLALEDVGNPHNLGGIMRSCAHFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDS 258 Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254 D L G+ + SS PL + K+ L+LG E GL ++ + Sbjct: 259 FVDVLDDFRQAGYTIVTTSSHKGTPLFKASLPAKMVLVLGQEYDGLSDAARQQGDLSVSI 318 Query: 255 HMPGIIKALNVSNAAAVAL--YITQNH 279 G +++LNVS A V L + QN Sbjct: 319 DGTGNVESLNVSVATGVLLAEWWRQNK 345 >gnl|CDD|182949 PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional. Length = 229 Score = 50.0 bits (120), Expect = 7e-07 Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 15/157 (9%) Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 A R L + ++ V+ PHN+ AI+R+A A + + S + +A+G+ + Sbjct: 14 ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMGSTAAGSNSWV 71 Query: 188 PYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKT 244 + DA+ + G Q + LS + +EI + +++G E G+ + Sbjct: 72 QVKTHRTIGDAVAHLKGQGMQILATHLSDTAVD--FREIDYTRPTCILMGQEKTGI---S 126 Query: 245 QETATSMAHLH----MPGIIKALNVSNAAAVALYITQ 277 QE A ++A M G++++LNVS A+A+ LY Q Sbjct: 127 QE-ALALADQDIIIPMIGMVQSLNVSVASALILYEAQ 162 >gnl|CDD|149230 pfam08032, SpoU_sub_bind, RNA 2'-O ribose methyltransferase substrate binding. This domain is a RNA 2'-O ribose methyltransferase substrate binding domain. Length = 75 Score = 46.5 bits (111), Expect = 9e-06 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 4/74 (5%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107 + G H V AL + +I +L T+ + L V V + +DK+ G Sbjct: 1 LIEGRHAVEEALKSG-PEIEKLFVTEGRRDKRKELLKLAKKRGIKVIEVSEKVLDKLSGT 59 Query: 108 EAVHQGLALETAPL 121 HQG+ P Sbjct: 60 -VNHQGVVAVVKPP 72 >gnl|CDD|161752 TIGR00185, rRNA_methyl_2, rRNA methylase, putative, group 2. this is part of the trmH (spoU) family of rRNA methylases. Length = 153 Score = 33.9 bits (78), Expect = 0.047 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Query: 231 LILGAEGKGLRPKT--QETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHF 280 L+ G E +GL P++ + M +++LN+SN+ A+ +Y Q + Sbjct: 97 LMFGPETRGL-PQSILDNMMEQKIRIPMTNNVRSLNLSNSVAIVVYEAWRQLGY 149 >gnl|CDD|161682 TIGR00050, rRNA_methyl_1, RNA methyltransferase, TrmH family, group 1. This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen. Length = 233 Score = 30.1 bits (68), Expect = 0.68 Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 29/149 (19%) Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSP-----SESAVLAKSASGALEHIPYIRISNLTDA 198 NIG+I R+ G+ +P E+ LA A L++ + +L +A Sbjct: 14 SGNIGSIARAMKNM---GLTELCLVNPKSHLEEEAYALAAGARDILDNAKVVD--DLDEA 68 Query: 199 LQKMHSWGFQTIGLSSDSK---KPLEQ--------EIKNDKIALILGAEGKGLRPKTQET 247 L +G S+ S+ +PL KIA++ G E GL +E Sbjct: 69 LDDCD----LVVGTSARSRNLQRPLLTPRELAPKLVAYKGKIAIVFGREDSGLT--NEEL 122 Query: 248 ATSMAHLHMPGIIK--ALNVSNAAAVALY 274 + +P + +LN+S+A AV LY Sbjct: 123 LKCHVLVSIPTSEEYPSLNLSHAVAVILY 151 >gnl|CDD|130796 TIGR01735, FGAM_synt, phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit. Length = 1310 Score = 29.4 bits (66), Expect = 1.1 Identities = 10/25 (40%), Positives = 17/25 (68%) Query: 234 GAEGKGLRPKTQETATSMAHLHMPG 258 GA G+G +PK T +++L++PG Sbjct: 322 GATGRGAKPKAGLTGFCVSNLNIPG 346 >gnl|CDD|178022 PLN02400, PLN02400, cellulose synthase. Length = 1085 Score = 29.2 bits (65), Expect = 1.4 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 7/69 (10%) Query: 36 FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP------H 89 + SRH SQP L +G VS + + + T L + +AN Sbjct: 133 LSSSSRHESQPIPLLTHG-QPVSGEIPCATPDNQSVRTTSGPLGPAERNANSSPYIDPRQ 191 Query: 90 PFPVKTVPP 98 P PV+ V P Sbjct: 192 PVPVRIVDP 200 >gnl|CDD|183905 PRK13233, nifH, nitrogenase reductase; Reviewed. Length = 275 Score = 27.5 bits (61), Expect = 3.9 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Query: 228 KIALILGAEGKGLRPKTQETATSMAHLH 255 KIA I G G G TQ TA +MA+ H Sbjct: 4 KIA-IYGKGGIGKSTTTQNTAAAMAYFH 30 >gnl|CDD|178235 PLN02628, PLN02628, fructose-1,6-bisphosphatase family protein. Length = 351 Score = 27.5 bits (61), Expect = 4.7 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 1/65 (1%) Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233 VL A + I + S L K S G D+ KPL+ + N+ I L Sbjct: 36 VVLMAHIQAACKRIAALLASPFNSELGKTSSGASGASGSGRDAPKPLD-IVSNEIILSSL 94 Query: 234 GAEGK 238 GK Sbjct: 95 RNSGK 99 >gnl|CDD|178513 PLN02925, PLN02925, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase. Length = 733 Score = 27.0 bits (60), Expect = 6.0 Identities = 12/22 (54%), Positives = 15/22 (68%) Query: 98 PQTIDKIVGKEAVHQGLALETA 119 P ID VGKE V +G+A+E A Sbjct: 691 PGKIDLYVGKEVVKRGIAMEEA 712 >gnl|CDD|177303 PHA00735, PHA00735, hypothetical protein. Length = 808 Score = 26.4 bits (58), Expect = 8.5 Identities = 13/26 (50%), Positives = 15/26 (57%) Query: 113 GLALETAPLLSPTLDAVRNSQLLMVL 138 G L TAP L+PT +V N L VL Sbjct: 60 GSTLSTAPWLNPTYISVYNKYYLQVL 85 >gnl|CDD|149197 pfam07982, Herpes_UL74, Herpes UL74 glycoproteins. Members of this family are viral glycoproteins that form part of an envelope complex. Length = 457 Score = 26.5 bits (58), Expect = 8.6 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%) Query: 22 KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62 KL+R K+ Q ++KS+ T+ P Y +T S A N Sbjct: 252 KLKRKQAPVKEPQKKSKKSQSTTTP-----YSSYTTSTAFN 287 >gnl|CDD|181068 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated. Length = 513 Score = 26.0 bits (58), Expect = 10.0 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 17/93 (18%) Query: 183 ALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241 ALEH+ +KM ++ F L++ E+ D +A IL G R Sbjct: 125 ALEHVVICETEEDDPHTEKMKTFTDF----LAAGDPAERAPEVDPDDVADILFTSGTTGR 180 Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 PK + H +SNAA A Y Sbjct: 181 PK----GAMLTH--------RQLLSNAADWAEY 201 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.316 0.130 0.369 Gapped Lambda K H 0.267 0.0760 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,403,797 Number of extensions: 271314 Number of successful extensions: 551 Number of sequences better than 10.0: 1 Number of HSP's gapped: 543 Number of HSP's successfully gapped: 21 Length of query: 282 Length of database: 5,994,473 Length adjustment: 92 Effective length of query: 190 Effective length of database: 4,006,537 Effective search space: 761242030 Effective search space used: 761242030 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 57 (25.7 bits)