RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase
protein [Candidatus Liberibacter asiaticus str. psy62]
         (282 letters)



>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH;
           2'O-methyltransferase, knot, montreal- kingston
           bacterial structural genomics initiative, BSGI; 2.5A
           {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
          Length = 253

 Score =  136 bits (344), Expect = 4e-33
 Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L     +  ++   K    +       A       ++    Q +D+   
Sbjct: 14  MIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSD 73

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              VHQG+     P      + +       +   L++LD V DPHN+GA LRSA A    
Sbjct: 74  GA-VHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVH 132

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   L
Sbjct: 133 AVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTL 192

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 193 YQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 246


>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance
           methyltransferase, 23S R methyltransferase; 2.00A
           {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
          Length = 277

 Score =  128 bits (324), Expect = 1e-30
 Identities = 39/254 (15%), Positives = 89/254 (35%), Gaps = 8/254 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLD 82
             +    +++    + SR         L      +   +     +  ++  +        
Sbjct: 13  ASDPA-VQRIIDVTKHSR---ASIKTTLIEDTEPLMECIRA-GVQFIEVYGSSGTPLDPA 67

Query: 83  WDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                     PV+ +    ++++   E   +   +   P  +   D       ++VLD V
Sbjct: 68  LLDLCRQREIPVRLIDVSIVNQLFKAERKAKVFGIARVPRPARLADIAERGGDVVVLDGV 127

Query: 142 NDPHNIGAILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
               NIGAI+R+++A    GI+      +      L +++ G +  +P +          
Sbjct: 128 KIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVVLADREEAVSF 187

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +     +  +       +   + D++AL+ G+E  G     QE +     + M    
Sbjct: 188 LRDNDIALMVLDTDGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSST 247

Query: 261 KALNVSNAAAVALY 274
           ++LNVS +  +AL+
Sbjct: 248 ESLNVSVSVGIALH 261


>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot,
           rossmann fold, EL30-like fold, riken structural
           genomics/proteomics initiative; 2.40A {Thermus
           thermophilus} SCOP: c.116.1.1 d.79.3.3
          Length = 274

 Score =  111 bits (279), Expect = 2e-25
 Identities = 53/270 (19%), Positives = 103/270 (38%), Gaps = 22/270 (8%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIF 69
           +I S  +    +L R            +K R +   +  FL  G   +  AL     ++ 
Sbjct: 2   RITSTANPRIKELARLLE---------RKHRDS---QRRFLIEGAREIERALQA-GIELE 48

Query: 70  QLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSP 124
           Q L  +  L   +              +  V    + K+  ++    G +AL   P  + 
Sbjct: 49  QALVWEGGLNPEEQQVYAALGRVGRLALLEVSEAVLKKLSVRD-NPAGLIALARMPERTL 107

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++V   +  P N+GA+LRSA A   + ++           V  ++++G +
Sbjct: 108 EEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGGVDLYSPQV-IRNSTGVV 166

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +  +  S  ++ L  +       +  +  ++    +      +A+ +G E +GLR   
Sbjct: 167 FSLRTLAASE-SEVLDWIKQHNLPLVATTPHAEALYWEANLRPPVAIAVGPEHEGLRAAW 225

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E A +   + M G   +LNVS +AA+ LY
Sbjct: 226 LEAAQTQVRIPMQGQADSLNVSVSAALLLY 255


>3n4j_A RNA methyltransferase; center for structural genomics of INF
           diseases, csgid; 1.47A {Yersinia pestis} PDB: 3n4k_A*
           1mxi_A* 1j85_A*
          Length = 165

 Score =  105 bits (262), Expect = 2e-23
 Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 7/158 (4%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N+ L +VL     P N G I+R      C   +        +   L ++     E     
Sbjct: 2   NAMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIK 61

Query: 191 RIS---NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                    D+ +   +   +   L++                L+ G E +GL     + 
Sbjct: 62  HHHDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDA 121

Query: 248 ATSMAHLHMP--GIIKALNVSNAAAVALY--ITQNHFA 281
             +   + +P     +++N+SNA +V +Y    Q  + 
Sbjct: 122 LPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGYP 159


>1mxi_A YIBK, hypothetical tRNA/RRNA methyltransferase HI0766;
           S-adenosylhomocysteine, SPOU family, structure 2
           function project; HET: SAH; 1.70A {Haemophilus
           influenzae} SCOP: c.116.1.1 PDB: 1j85_A*
          Length = 160

 Score = 96.0 bits (238), Expect = 8e-21
 Identities = 25/149 (16%), Positives = 45/149 (30%), Gaps = 6/149 (4%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL     P N G I+R          +        +   L +S     E     R     
Sbjct: 5   VLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTFE 64

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             L+         +  ++       Q        L+ G E +G+             + +
Sbjct: 65  AFLESEKPKRLFAL--TTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQKIRI 122

Query: 257 P--GIIKALNVSNAAAVALY--ITQNHFA 281
           P     +++N+SN+ AV +Y    Q  + 
Sbjct: 123 PMTANSRSMNLSNSVAVTVYEAWRQLGYK 151


>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural
           genomics, PSI-2, protein structure initiative; 2.30A
           {Bordetella pertussis}
          Length = 173

 Score = 94.9 bits (235), Expect = 2e-20
 Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 15/158 (9%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--YSPSESAVLAKSASGALEHIPY 189
           S++  ++   + P N+G+  R+        ++         +        ASGAL+ +  
Sbjct: 9   SRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLER 68

Query: 190 IRISNLTDALQK-------------MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
             + +  +                         I  ++   +    + +   +A++LG E
Sbjct: 69  AAVHDTLEEALAPVTLAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTE 128

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             GL     E    + H+       +LNV+ A  +A +
Sbjct: 129 RAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAW 166


>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2,
           protein structure initiative, MI center for structural
           genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
          Length = 249

 Score = 92.4 bits (229), Expect = 1e-19
 Identities = 23/149 (15%), Positives = 48/149 (32%), Gaps = 11/149 (7%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +L       NIGA  R+ + F    +          +      ASGA   + +  +    
Sbjct: 8   ILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLFPTV 67

Query: 197 DALQKMHSWGFQTIGLSSDSKKP-----------LEQEIKNDKIALILGAEGKGLRPKTQ 245
               +   + F T     +  KP                +  ++ ++ G E  GL  +  
Sbjct: 68  AEAIRDCDYVFATTARGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLENEDV 127

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             A ++  + +     +LN++    +  Y
Sbjct: 128 ALANAIVTVPVNPEFFSLNLAQCVLLLAY 156


>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A
           {Streptomyces viridochromogenes} PDB: 1x7p_A*
          Length = 287

 Score = 90.8 bits (224), Expect = 3e-19
 Identities = 50/257 (19%), Positives = 95/257 (36%), Gaps = 9/257 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           RN R +++ Q+        ++    FL  GV  +S A+ +       L   +  L++   
Sbjct: 18  RNAR-FQQWQALLGNRNKRTR-AGEFLVMGVRPISLAVEHGWPVRTLLYDGQRELSKWAR 75

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHVN 142
           +           + P  + ++  K      +  +   P        VR   L ++ D   
Sbjct: 76  ELLRTVRTEQIAMAPDLLMELGEKNEAPPEVVAVVEMPADDLDRIPVREDFLGVLFDRPT 135

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
            P NIG+I+RSA A    G+I     +        +S++G+L  +P +R+ +  + +  +
Sbjct: 136 SPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVPSPGEVMDWV 195

Query: 203 HSW-----GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            +          +G        +          L++G E  GL    +        + M 
Sbjct: 196 EARRAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLCDYTVSIPMA 255

Query: 258 GIIKALNVSNAAAVALY 274
           G   +LN +NAA   LY
Sbjct: 256 GSASSLNAANAATAILY 272


>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode,
           structural genomics; 2.40A {Burkholderia pseudomallei
           305}
          Length = 160

 Score = 90.4 bits (223), Expect = 4e-19
 Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 4/155 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            S   +VL     P N G ++R          +      P + A + ++     E+    
Sbjct: 3   GSMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMR 62

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT--QETA 248
              +    +        +    ++                 + GAE +GL P    +   
Sbjct: 63  VHRDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAP 122

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
                L M    ++LN+SN  AV ++    Q  F 
Sbjct: 123 EQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAGFE 157


>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying
           enzyme, topological knot; 1.85A {Aquifex aeolicus}
          Length = 211

 Score = 90.6 bits (224), Expect = 4e-19
 Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 2/146 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L++  D+V + HN  AI+R+  A     +         ++ +      G+ + +  
Sbjct: 22  RQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHA-EGKKAKINEGITQGSHKWVFI 80

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            ++ N    L +  + GFQ +      +     +        L++G E +G+ P+  E A
Sbjct: 81  EKVDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIA 140

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + M G+ ++LNVS A  + LY
Sbjct: 141 DKKIVIPMYGMAQSLNVSVATGIILY 166


>3gyq_A RRNA (adenosine-2'-O-)-methyltransferase; rRNA methyltransferase,
           spout mtases, SAM, trefoil knot, antibiotic resistance;
           HET: SAM; 2.45A {Streptomyces cyaneus}
          Length = 272

 Score = 88.9 bits (219), Expect = 1e-18
 Identities = 47/248 (18%), Positives = 102/248 (41%), Gaps = 7/248 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
            +++    + SR         L   V  +  ++     +  ++  + ++    +      
Sbjct: 18  VQRIIDVTKPSR---SNIKTTLIEDVEPLMHSIAA-GVEFIEVYGSDSSPFPSELLDLCG 73

Query: 89  HPF-PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               PV+ +    ++++   E   +   +   P  +   D       ++VLD V    NI
Sbjct: 74  RQNIPVRLIDSSIVNQLFKGERKAKTFGIARVPRPARFGDIASRRGDVVVLDGVKIVGNI 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+R+++A    GII       S +    + AS        + +S   +A+  +   G 
Sbjct: 134 GAIVRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSLPVVLSGREEAIAFIRDSGM 193

Query: 208 QTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           Q + L +D    +++   N D++AL+ G+E  G     +E +++   + M    ++LNVS
Sbjct: 194 QLMTLKADGDISVKELGDNPDRLALLFGSEKGGPSDLFEEASSASVSIPMMSQTESLNVS 253

Query: 267 NAAAVALY 274
            +  +AL+
Sbjct: 254 VSLGIALH 261


>3ic6_A Putative methylase family protein; structural genomics, PSI-2,
           protein structure initiative, midwest center for
           structural genomics; 2.59A {Neisseria gonorrhoeae fa
           1090}
          Length = 223

 Score = 83.5 bits (205), Expect = 5e-17
 Identities = 32/185 (17%), Positives = 57/185 (30%), Gaps = 31/185 (16%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII---------------- 163
             L P L     + + ++L   + P NIG+  R+        +                 
Sbjct: 5   TALKPALPDYLGN-IRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPP 63

Query: 164 ---TTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSWGFQT---------- 209
                   S +        ASGA + +    I   L +AL         T          
Sbjct: 64  VFNPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRREITAPL 123

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                   + L+   + +K+AL+ G E  GL  +       +  ++      +LN++ A 
Sbjct: 124 QTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAV 183

Query: 270 AVALY 274
            V  Y
Sbjct: 184 QVVCY 188


>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP:
           c.116.1.1
          Length = 194

 Score = 79.6 bits (195), Expect = 8e-16
 Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 1/145 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++L++V+ PHN+ AILR+  A            +         S          
Sbjct: 19  RQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAV-NPTGGVPTFNETSGGSHKWVYLR 77

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +                        +  +   +       A++ GAE  G+  +    A 
Sbjct: 78  VHPDLHEAFRFLKERGFTVYATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALAD 137

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + M G++++LNVS AAAV L+
Sbjct: 138 GAIKIPMLGMVQSLNVSVAAAVILF 162


>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural
           genomics, structural genomics consortium, SGC, RNA
           binding protein; HET: SAH; 1.60A {Homo sapiens}
          Length = 184

 Score = 79.6 bits (195), Expect = 8e-16
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 2/147 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII--TTKRYSPSESAVLAKSASGALEHI 187
             S+L++V   ++ P N+G + R+   F    ++  + +  S  +   L+ SA   L  +
Sbjct: 23  SISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQHLSVSAEQWLPLV 82

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                  +    QK            +     L Q    +K  L+LG E +G+     + 
Sbjct: 83  EVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQ 142

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +   GII++LNV  + A+ ++
Sbjct: 143 LDVCVEIPQQGIIRSLNVHVSGALLIW 169


>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, knot,
           structural genomics, PSI-2, protein structure
           initiative; HET: MSE; 1.85A {Porphyromonas gingivalis
           W83}
          Length = 257

 Score = 77.0 bits (188), Expect = 4e-15
 Identities = 52/252 (20%), Positives = 90/252 (35%), Gaps = 19/252 (7%)

Query: 31  KKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           K ++S  ++       E  F   G   V   L     +   L+ T   L  +    +   
Sbjct: 11  KFLRSLRERKYRLR--EQAFAVEGPKLVGEMLP--FYRCRMLVGTAAMLRAVSTPHDAEV 66

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              V+        +I  +      +A+       P         L ++LD V DP N+G 
Sbjct: 67  ---VELPESFDFKRISTQTTPQPLMAVFD----LPAEPEPVVEGLTLLLDGVQDPGNVGT 119

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ILR+A  F    +      +   S  + +++ GAL  +    + N  D L      G   
Sbjct: 120 ILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYFRRQGIPV 179

Query: 210 IGLSSDSKK--PLEQEIKNDKIALILGAEGKGLRPKTQETATS-----MAHLHMPGIIKA 262
            G   D +           +   L+LG+EG+G+ P+     T       + L + G  ++
Sbjct: 180 YGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTES 239

Query: 263 LNVSNAAAVALY 274
           LNV+ A A+   
Sbjct: 240 LNVAIATAILCS 251


>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI0380; APC63004,
           methylase family protein, haemophilus influenzae RD
           KW20; 2.01A {Haemophilus influenzae}
          Length = 244

 Score = 72.6 bits (177), Expect = 1e-13
 Identities = 27/157 (17%), Positives = 51/157 (32%), Gaps = 10/157 (6%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL   +   NIG+  R+        +      S  E +     ++GA   +   R
Sbjct: 6   ENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSY--ALSAGAENIVKNAR 63

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPL--------EQEIKNDKIALILGAEGKGLRPK 243
           + +  D      S    T       +  L        +      KIA++ G E  GL  +
Sbjct: 64  VVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNE 123

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    ++       +LN++ A  +  Y  +  F
Sbjct: 124 ELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAF 160


>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase,
           adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga
           maritima}
          Length = 192

 Score = 63.6 bits (154), Expect = 5e-11
 Identities = 21/171 (12%), Positives = 53/171 (30%), Gaps = 28/171 (16%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-------------TTKRYSPSESAV 175
           ++     ++   V +  ++  I R+A  ++  G                  ++       
Sbjct: 14  IKGKDGSIISTAVTNL-DVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFG- 71

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-----------EQEI 224
            ++      E +  +++ +  + + +          L   +                  I
Sbjct: 72  -SRYNPSRAESLKLVKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIII 130

Query: 225 KNDKIALILGAEGKGLRPKTQETATS-MAHLHMPGIIKALNVSNAAAVALY 274
           + +K  LIL   G GL  +  E +   +  +        L+V  AAA+ + 
Sbjct: 131 ETEKPVLILLGTGWGLPDEILEISDYVLEPIRAQSDFNHLSVRAAAAIIID 181


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 46.1 bits (109), Expect = 8e-06
 Identities = 57/370 (15%), Positives = 102/370 (27%), Gaps = 182/370 (49%)

Query: 18  SHYAKLRRNHRDYKKM--QSFNQKS--RH-TSQPENLFLYGV-------------H-TVS 58
              ++L R   D +K+  Q  N      + ++ P+  +L  +             H  V+
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252

Query: 59  A-ALN-NPS--RKIF-------QLLATKNALARLD-WDA---NL--------------PH 89
           A  L   P   R          Q L T  A+A  D W++   ++                
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN---SQLLMVLDH------ 140
            +P  ++PP  +     ++++      E  P  SP L ++ N    Q+   ++       
Sbjct: 313 AYPNTSLPPSIL-----EDSLENN---EGVP--SPML-SISNLTQEQVQDYVNKTNSHLP 361

Query: 141 ---------VNDPHNI---G---------AILR----------SAVAFSCDGIITTKR-- 167
                    VN   N+   G           LR          S + FS       +R  
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS-------ERKL 414

Query: 168 ---------YSPSESAVLAKSASGALEH--------------IP-Y-------IR--ISN 194
                     SP  S +L  ++    +               IP Y       +R    +
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474

Query: 195 LTDALQKM------HSW-----------------GFQTIGLSSDSKKPLEQEIKNDKIAL 231
           +++ +           W                 G   +G        L    K      
Sbjct: 475 ISERIVDCIIRLPVK-WETTTQFKATHILDFGPGGASGLG-------VLTHRNK------ 520

Query: 232 ILGAEGKGLR 241
               +G G+R
Sbjct: 521 ----DGTGVR 526



 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 55/320 (17%), Positives = 95/320 (29%), Gaps = 140/320 (43%)

Query: 47  ENLFLYG--VHTVSAALNNPSRKIFQLLATKNAL-----ARLDWDANLPHPFPVKTVPPQ 99
           EN +L G  +H ++A L   +     L+ TK  +     AR         PF        
Sbjct: 92  ENCYLEGNDIHALAAKLLQENDTT--LVKTKELIKNYITAR----IMAKRPFD--KKSNS 143

Query: 100 TIDKIVGKEAVH-------QG--------LALET----APLLSPTLDAVRNSQLLMVLDH 140
            + + VG+           QG        L  +       L+   +     ++ L  L  
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELR-DLYQTYHVLVGDLIKFS--AETLSEL-- 198

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYS---------------PSESAVLAKSA--S-- 181
                     +R+ +          K ++               P +  +L  S   S  
Sbjct: 199 ----------IRTTLDAE-------KVFTQGLNILEWLENPSNTPDKDYLL--SIPISCP 239

Query: 182 --GALE--HIPYI---RISNLT-----DALQKM--HSWGFQTIGL-------SSDSKKPL 220
             G ++  H  Y+   ++   T       L+    HS   Q  GL        +DS    
Sbjct: 240 LIGVIQLAH--YVVTAKLLGFTPGELRSYLKGATGHS---Q--GLVTAVAIAETDS---W 289

Query: 221 EQEIKNDKIAL-IL---GAEGKGLRPKTQETA--TSMAHLHMPGIIKA------------ 262
           E    + + A+ +L   G           E    TS+     P I++             
Sbjct: 290 ESFFVSVRKAITVLFFIGVRC-------YEAYPNTSLP----PSILEDSLENNEGVPSPM 338

Query: 263 LNVSNA--AAVALYITQ-NH 279
           L++SN     V  Y+ + N 
Sbjct: 339 LSISNLTQEQVQDYVNKTNS 358


>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A
           {Mycobacterium tuberculosis H37RV} PDB: 2z2j_A 2z2k_A
           2jrc_A
          Length = 191

 Score = 27.3 bits (60), Expect = 4.0
 Identities = 7/40 (17%), Positives = 18/40 (45%)

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           + ++P+E A +      A +    +    +  A  ++H+W
Sbjct: 152 ENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVHAW 191


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.9 bits (58), Expect = 5.5
 Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 11/34 (32%)

Query: 99  QTIDKIVGKEAVHQGLAL---ETAPLLS--PTLD 127
           Q + K+   +A    L L   ++AP L+   T++
Sbjct: 20  QALKKL---QA---SLKLYADDSAPALAIKATME 47


>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei}
           SCOP: d.142.2.4
          Length = 277

 Score = 26.5 bits (58), Expect = 6.6
 Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 8/96 (8%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--------WDANLPHPF 91
            R      N   +G H +        R +  LL  K  L+R+         + A   HP 
Sbjct: 63  KRSGIMDPNENFFGYHILIDEFTAQIRILNDLLKQKYGLSRVGRLVLNGELFGAKYKHPL 122

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
             K+    T+            +  E  P  SP L 
Sbjct: 123 VPKSEKWCTLPNGKKFPIAGVQIQREPFPQYSPELH 158


>3l6u_A ABC-type sugar transport system periplasmic component; structural
           genomics, nysgrc, target 11006S, PSI-2, protein
           structure initiative; 1.90A {Exiguobacterium sibiricum}
          Length = 293

 Score = 26.4 bits (57), Expect = 8.5
 Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 3/73 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +V    N   +    +   V    D I  T        + + ++       IP   I  
Sbjct: 41  ALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKK---AGIPVFAIDR 97

Query: 195 LTDALQKMHSWGF 207
           +  +   + S   
Sbjct: 98  MIRSDAVVSSITS 110


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.316    0.130    0.369 

Gapped
Lambda     K      H
   0.267   0.0535    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,224,840
Number of extensions: 94924
Number of successful extensions: 383
Number of sequences better than 10.0: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 27
Length of query: 282
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 191
Effective length of database: 3,487,026
Effective search space: 666021966
Effective search space used: 666021966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.8 bits)