HHsearch alignment for GI: 254780604 and conserved domain: COG1982
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].
Probab=99.74 E-value=1.6e-16 Score=126.20 Aligned_cols=283 Identities=17% Similarity=0.161 Sum_probs=174.5
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEEECC-CCCHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEC-------
Q ss_conf 640289999988873499733774056-520122202346778872342132111675201453165135316-------
Q gi|254780604|r 88 TNYYHVMLEKELATLHGKKAALIFNSG-YIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWN------- 159 (401)
Q Consensus 88 ~~~~~~~LE~~la~~~g~e~al~~~SG-~~An~~~i~~l~~~~d~ii~~~D~~~HaSi~~g~~l~~a~~~~f~------- 159 (401)
T Consensus 68 p~G~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~~GD~VLv--dRN~HKSi~~glilaGa~Pvyl~p~~np~~ 145 (557)
T COG1982 68 PEGPIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLTPGDKVLV--DRNCHKSIHHGLILAGATPVYLEPSRNPLY 145 (557)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEE--CCCCCHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 775388999999998688862999778228999999860389998996--587637888899874883278417778544
Q ss_pred ----CCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf ----7998898886740663356236216743567733689999998401471899712110012560258999997202
Q gi|254780604|r 160 ----HNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIM 235 (401)
Q Consensus 160 ----HnD~~~Le~~L~~~~~~~~~iIv~e~v~Sm~G~~apL~~l~~l~~~~~~~LivDEAH~~Gv~G~~G~G~~~~~g~~ 235 (401)
T Consensus 146 gi~ggI~~~~~~~al~~~~~~~k~~vitnpTY--dGv~~n~~~i~~~~~~~~a~v~~deah~~~~-~~~~~l-~~-~~~~ 220 (557)
T COG1982 146 GIIGGIPLETFKEALLAHPDAEKLAVITNPTY--DGVCYNLRKIVELLHHYGAWVLYDEAHPAHF-DFSPML-PE-SALN 220 (557)
T ss_pred CCCCCCCHHHHHHHHHHCHHHHHEEEEECCCC--CEEEECHHHHHHHHHHCCCEEEHHHCCCCCC-CCCCCC-CC-HHHH
T ss_conf 65378698998799984713040688964853--2476059999999753186688864577433-555557-41-1454
Q ss_pred CCCCHHHCCCCCCCCC--CEEEEECC-------HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC--HHH----
Q ss_conf 0010110144432222--31687548-------44500000133222333444431478899876432012--016----
Q gi|254780604|r 236 NRITIISGTLAKGFGT--FGGYIAAS-------ENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQH--YDE---- 300 (401)
Q Consensus 236 ~~~di~~~TlsKa~g~--~GG~i~g~-------~~~~~~l~~~~~~~ifs~~l~p~~~aa~~~al~~l~~~--~~~---- 300 (401)
T Consensus 221 ~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea~~-----~h~STSPsY~l~ASlD~-Ar~~~~~~G~~l~~~~ 294 (557)
T COG1982 221 GGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNEALM-----MHQSTSPSYPLMASLDV-ARMQEGNAGRELWQEV 294 (557)
T ss_pred CCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH-----HHCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf 57438981054421234366787508876577899999999-----88067955899988999-9987543347888888
Q ss_pred HHHHHHHHHHHHHHHHHCC-CCCCCCC-----------------C----CE-EEEEECCHHH-HHHHHHHHHHHCCEEEE
Q ss_conf 8888999987666566449-8303789-----------------8----65-9999689799-99999999973790998
Q gi|254780604|r 301 RKKYLERVKQLRHSLENKA-IPCIPNE-----------------S----HI-IPIMVGDSHK-CTQISNILLKEFGIYIQ 356 (401)
Q Consensus 301 ~~~l~~~~~~l~~~L~~~g-~~~~~~~-----------------s----~I-vpi~~g~~~~-~~~~~~~lL~e~Gi~v~ 356 (401)
T Consensus 295 ~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gipg~~v~~~-L~e~gii~e 373 (557)
T COG1982 295 IDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIPGAIVAKY-LREHGIIPE 373 (557)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHH-HHHCCCEEE
T ss_conf 9999999999999887648864026655577533222122344542036607999657789739999999-997588145
Q ss_pred EECCCCCCCCCCEEE--EECCCCCCHHHHHHHHHHHH
Q ss_conf 404888888872189--96185799999999999999
Q gi|254780604|r 357 PINYPTVAKKKERLR--VTLTPLHTDSDIEHLVSSLE 391 (401)
Q Consensus 357 ~i~~PtVp~g~~rlR--i~l~a~ht~edid~~~~~l~ 391 (401)
T Consensus 374 ~-------~~d~~~lll~~~~~gk~~~lv~~L~~f~r 403 (557)
T COG1982 374 E-------TGDYSNLLLFSPGIGKWQTLVDRLLEFKR 403 (557)
T ss_pred E-------CCCCEEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 3-------17732467863241067899999999987