HHsearch alignment for GI: 254780604 and conserved domain: COG1982

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].
Probab=99.74  E-value=1.6e-16  Score=126.20  Aligned_cols=283  Identities=17%  Similarity=0.161  Sum_probs=174.5

Q ss_pred             CCCHHHHHHHHHHHHCCCCCEEEEECC-CCCHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEC-------
Q ss_conf             640289999988873499733774056-520122202346778872342132111675201453165135316-------
Q gi|254780604|r   88 TNYYHVMLEKELATLHGKKAALIFNSG-YIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWN-------  159 (401)
Q Consensus        88 ~~~~~~~LE~~la~~~g~e~al~~~SG-~~An~~~i~~l~~~~d~ii~~~D~~~HaSi~~g~~l~~a~~~~f~-------  159 (401)
T Consensus        68 p~G~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~~GD~VLv--dRN~HKSi~~glilaGa~Pvyl~p~~np~~  145 (557)
T COG1982          68 PEGPIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLTPGDKVLV--DRNCHKSIHHGLILAGATPVYLEPSRNPLY  145 (557)
T ss_pred             CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEE--CCCCCHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf             775388999999998688862999778228999999860389998996--587637888899874883278417778544


Q ss_pred             ----CCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             ----7998898886740663356236216743567733689999998401471899712110012560258999997202
Q gi|254780604|r  160 ----HNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIM  235 (401)
Q Consensus       160 ----HnD~~~Le~~L~~~~~~~~~iIv~e~v~Sm~G~~apL~~l~~l~~~~~~~LivDEAH~~Gv~G~~G~G~~~~~g~~  235 (401)
T Consensus       146 gi~ggI~~~~~~~al~~~~~~~k~~vitnpTY--dGv~~n~~~i~~~~~~~~a~v~~deah~~~~-~~~~~l-~~-~~~~  220 (557)
T COG1982         146 GIIGGIPLETFKEALLAHPDAEKLAVITNPTY--DGVCYNLRKIVELLHHYGAWVLYDEAHPAHF-DFSPML-PE-SALN  220 (557)
T ss_pred             CCCCCCCHHHHHHHHHHCHHHHHEEEEECCCC--CEEEECHHHHHHHHHHCCCEEEHHHCCCCCC-CCCCCC-CC-HHHH
T ss_conf             65378698998799984713040688964853--2476059999999753186688864577433-555557-41-1454


Q ss_pred             CCCCHHHCCCCCCCCC--CEEEEECC-------HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC--HHH----
Q ss_conf             0010110144432222--31687548-------44500000133222333444431478899876432012--016----
Q gi|254780604|r  236 NRITIISGTLAKGFGT--FGGYIAAS-------ENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQH--YDE----  300 (401)
Q Consensus       236 ~~~di~~~TlsKa~g~--~GG~i~g~-------~~~~~~l~~~~~~~ifs~~l~p~~~aa~~~al~~l~~~--~~~----  300 (401)
T Consensus       221 ~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea~~-----~h~STSPsY~l~ASlD~-Ar~~~~~~G~~l~~~~  294 (557)
T COG1982         221 GGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNEALM-----MHQSTSPSYPLMASLDV-ARMQEGNAGRELWQEV  294 (557)
T ss_pred             CCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH-----HHCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf             57438981054421234366787508876577899999999-----88067955899988999-9987543347888888


Q ss_pred             HHHHHHHHHHHHHHHHHCC-CCCCCCC-----------------C----CE-EEEEECCHHH-HHHHHHHHHHHCCEEEE
Q ss_conf             8888999987666566449-8303789-----------------8----65-9999689799-99999999973790998
Q gi|254780604|r  301 RKKYLERVKQLRHSLENKA-IPCIPNE-----------------S----HI-IPIMVGDSHK-CTQISNILLKEFGIYIQ  356 (401)
Q Consensus       301 ~~~l~~~~~~l~~~L~~~g-~~~~~~~-----------------s----~I-vpi~~g~~~~-~~~~~~~lL~e~Gi~v~  356 (401)
T Consensus       295 ~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gipg~~v~~~-L~e~gii~e  373 (557)
T COG1982         295 IDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIPGAIVAKY-LREHGIIPE  373 (557)
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHH-HHHCCCEEE
T ss_conf             9999999999999887648864026655577533222122344542036607999657789739999999-997588145


Q ss_pred             EECCCCCCCCCCEEE--EECCCCCCHHHHHHHHHHHH
Q ss_conf             404888888872189--96185799999999999999
Q gi|254780604|r  357 PINYPTVAKKKERLR--VTLTPLHTDSDIEHLVSSLE  391 (401)
Q Consensus       357 ~i~~PtVp~g~~rlR--i~l~a~ht~edid~~~~~l~  391 (401)
T Consensus       374 ~-------~~d~~~lll~~~~~gk~~~lv~~L~~f~r  403 (557)
T COG1982         374 E-------TGDYSNLLLFSPGIGKWQTLVDRLLEFKR  403 (557)
T ss_pred             E-------CCCCEEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             3-------17732467863241067899999999987