HHsearch alignment for GI: 254780604 and conserved domain: COG3033
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism].
Probab=99.13 E-value=9.2e-08 Score=69.85 Aligned_cols=320 Identities=18% Similarity=0.288 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCCCCCC-----EEEEHH
Q ss_conf 999999999998298776410002764028999998887349973377405652012220234677887-----234213
Q gi|254780604|r 63 KVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDN-----IICFSD 137 (401)
Q Consensus 63 ~v~~a~~~a~~~~G~~~~~sr~~~G~~~~~~~LE~~la~~~g~e~al~~~SG~~An~~~i~~l~~~~d~-----ii~~~D 137 (401)
T Consensus 59 ams~~qwaamm~GDEAYagsrs-------~~~L~~avkdifGfq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN 131 (471)
T COG3033 59 AMTDKQWAAMMRGDEAYAGSRS-------YYALADAVKDIFGFQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSN 131 (471)
T ss_pred CCCHHHHHHHHCCCHHHCCCCC-------HHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 2538999988525354315533-------899999999861734651255773177788999841032067741012345
Q ss_pred H-----HHHHHHHHHHH-H-------CCCC-EEEECCC-CHHHHHHHHHHCCCC-CCCEEECCCCCCCCCC---HHHHHH
Q ss_conf 2-----11167520145-3-------1651-3531679-988988867406633-5623621674356773---368999
Q gi|254780604|r 138 S-----HNHASIIEGIN-K-------ARCK-KVIWNHN-DLEDLEKNLAATDLS-IPKIIIFESIYSMDGD---IAPIKE 198 (401)
Q Consensus 138 ~-----~~HaSi~~g~~-l-------~~a~-~~~f~Hn-D~~~Le~~L~~~~~~-~~~iIv~e~v~Sm~G~---~apL~~ 198 (401)
T Consensus 132 ~~FdTTr~h~~-~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~ 210 (471)
T COG3033 132 YHFDTTRGHIQ-INGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKA 210 (471)
T ss_pred CEECCHHHHHH-HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHH
T ss_conf 31202267787-54870212316655664556887786579999999987371458689999962666787120776999
Q ss_pred HHHHHHCCCCEEEECCCCCC-----------CCCCCHHHHHH-HHHHCCCCCCHHHCCCCC-CCCCCEEEEECCHH----
Q ss_conf 99984014718997121100-----------12560258999-997202001011014443-22223168754844----
Q gi|254780604|r 199 ICDLADQYNAITYIDEVHAV-----------GIHGSCGAGIS-EREGIMNRITIISGTLAK-GFGTFGGYIAASEN---- 261 (401)
Q Consensus 199 l~~l~~~~~~~LivDEAH~~-----------Gv~G~~G~G~~-~~~g~~~~~di~~~TlsK-a~g~~GG~i~g~~~---- 261 (401)
T Consensus 211 v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~s---YaD~~~mS~KKD~lvnmGGfl~~~D~~~fD 287 (471)
T COG3033 211 VYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYS---YADGCTMSAKKDGLVNMGGFLCFKDDSFFD 287 (471)
T ss_pred HHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---HHHHHEEECCCCCEECCCCEEEECCCCHHH
T ss_conf 99999871995896445665420223424765554609999999986---512430202545242246578864750778
Q ss_pred HHHHHHCCC------CCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCEEEEEE
Q ss_conf 500000133------22233344443147889987643201201688889999876665664498303-78986599996
Q gi|254780604|r 262 LCDFIRSFA------SGFIFSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCI-PNESHIIPIMV 334 (401)
Q Consensus 262 ~~~~l~~~~------~~~ifs~~l~p~~~aa~~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~g~~~~-~~~s~Ivpi~~ 334 (401)
T Consensus 288 vy~~~~~~~V~~eG~~tY---Ggl~GrdmealAvGL~e~~~~~yl~~R-v~Qv~YL~~~l~~~GVpi~~paGGHavfvda 363 (471)
T COG3033 288 VYEECRTLVVVQEGFPTY---GGLAGRDMEALAVGLREGVNFDYLAHR-VAQVQYLADGLEEAGVPIVQPAGGHAVFVDA 363 (471)
T ss_pred HHHHHHHHEEEECCCCCC---CCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHCCCEEEECCCCCEEEEEH
T ss_conf 999987665751266665---764423289999788874270899999-9999999988886597368527871699634
Q ss_pred C--------CHHHHHHHHHHHHHHCCEEEEEE------CCCCCCCCC----CEEEEECC-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 8--------97999999999997379099840------488888887----21899618-57999999999999999999
Q gi|254780604|r 335 G--------DSHKCTQISNILLKEFGIYIQPI------NYPTVAKKK----ERLRVTLT-PLHTDSDIEHLVSSLENVWQ 395 (401)
Q Consensus 335 g--------~~~~~~~~~~~lL~e~Gi~v~~i------~~PtVp~g~----~rlRi~l~-a~ht~edid~~~~~l~~v~~ 395 (401)
T Consensus 364 ~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e 443 (471)
T COG3033 364 GKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKE 443 (471)
T ss_pred HHHCCCCCHHHCCHHHHHHHHHHHHCEEEEEEECEECCCCCCCCCCCCCCHHEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 56367788244847789999999838236642011115587764347871230467435111456679999999999985
Q ss_pred HH
Q ss_conf 74
Q gi|254780604|r 396 KM 397 (401)
Q Consensus 396 ~l 397 (401)
T Consensus 444 ~~ 445 (471)
T COG3033 444 NA 445 (471)
T ss_pred CC
T ss_conf 42