>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

Probab=99.93 E-value=5e-24 Score=174.45 Aligned_cols=332 Identities=15% Similarity=0.141 Sum_probs=212.8 Q ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHC----CC----CCEEEEEC Q ss_conf 79868998114474667798899999999999829877641000276402899999888734----99----73377405 Q gi|254780604|r 42 EGSRKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLH----GK----KAALIFNS 113 (401) Q Consensus 42 ~~~~~~l~f~sndYLgL~~~p~v~~a~~~a~~~~G~~~~~sr~~~G~~~~~~~LE~~la~~~----g~----e~al~~~S 113 (401) T Consensus 26 ~~G~dvi~l~ig~-pdf~~p~~i~~a~~~a~~~~~~~------~Y~~~~G~~~lreaia~~~~~~~g~~~~p~~~vi~t~ 98 (383) T TIGR03540 26 AEGVDVISLGIGD-PDLPTPKHIVEALCKAAENPENH------RYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLI 98 (383) T ss_pred HCCCCEEECCCCC-CCCCCCHHHHHHHHHHHHCCCCC------CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECC T ss_conf 5699858888998-99998999999999998288876------5499878499999999999998689899676699847 Q ss_pred CC-CCHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEECC-------CCHHHHHHHHHHCCCCCCCEEECCC Q ss_conf 65-201222023467788723421321116752014531651353167-------9988988867406633562362167 Q gi|254780604|r 114 GY-IANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNH-------NDLEDLEKNLAATDLSIPKIIIFES 185 (401) Q Consensus 114 G~-~An~~~i~~l~~~~d~ii~~~D~~~HaSi~~g~~l~~a~~~~f~H-------nD~~~Le~~L~~~~~~~~~iIv~e~ 185 (401) T Consensus 99 Ga~~al~~~~~~l~~pGD~Vli~~--P~Y~~y~~~~~~~g~~~v~vpl~~~~~~~~d~e~l~~~~~---~~~k~iil~~P 173 (383) T TIGR03540 99 GSKEGIAHIPLAFVNPGDIVLVPD--PGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIA---KKAKLMFINYP 173 (383) T ss_pred CCHHHHHHHHHHHCCCCCEEEECC--CCCCCHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHCC---CCCEEEEECCC T ss_conf 825999999999668989899878--9860169999971985899613357798579999987452---37749998999 Q ss_pred CCCCCCCHH---HHHHHHHHHHCCCCEEEECCCCCCCCCCCH-HHHHHHHHHCCCCCCHHHCCCCCCCCCCE---EEEEC Q ss_conf 435677336---899999984014718997121100125602-58999997202001011014443222231---68754 Q gi|254780604|r 186 IYSMDGDIA---PIKEICDLADQYNAITYIDEVHAVGIHGSC-GAGISEREGIMNRITIISGTLAKGFGTFG---GYIAA 258 (401) Q Consensus 186 v~Sm~G~~a---pL~~l~~l~~~~~~~LivDEAH~~Gv~G~~-G~G~~~~~g~~~~~di~~~TlsKa~g~~G---G~i~g 258 (401) T Consensus 174 ~-NPTG~v~s~~~l~~i~~la~~~~i~iIsDEiY~~l~~~~~~~~s~~~~~~-~~~~~i~~~S~SK~~~~~G~RiG~~i~ 251 (383) T TIGR03540 174 N-NPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDG-AKDVGIEFHSLSKTYNMTGWRIGMAVG 251 (383) T ss_pred C-CCCCCCCCCHHHHCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCCEECCC-CCCEEEEEEECCCCCCCCCCEEEEECC T ss_conf 8-97070121022220100124554057611025553038999977111366-554257763023544788734896228 Q ss_pred CHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE-EEEEECC Q ss_conf 844500000133222333444431478899876432012-01688889999876665664498303789865-9999689 Q gi|254780604|r 259 SENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQH-YDERKKYLERVKQLRHSLENKAIPCIPNESHI-IPIMVGD 336 (401) Q Consensus 259 ~~~~~~~l~~~~~~~ifs~~l~p~~~aa~~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~~g~~~~~~~s~I-vpi~~g~ 336 (401) T Consensus 252 ~~~l~~~~~~~~-~~~~~~~~~~~-q~a~~~al~~~~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~~p~g~~~~w~~~~~ 329 (383) T TIGR03540 252 NADLIAGLGKVK-TNVDSGVFQAI-QYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKIGIDVEKPKATFYVWVPVPE 329 (383) T ss_pred CHHHHHHHHHHH-HHHCCCCCHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEEECCC T ss_conf 999999999997-55135676599-9999999859199999999999999999999998769877357805799898999 Q ss_pred HHHHHHHHHHHHHHCCEEEEEEC-CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH Q ss_conf 79999999999973790998404-8888888721899618579999999999999999 Q gi|254780604|r 337 SHKCTQISNILLKEFGIYIQPIN-YPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENV 393 (401) Q Consensus 337 ~~~~~~~~~~lL~e~Gi~v~~i~-~PtVp~g~~rlRi~l~a~ht~edid~~~~~l~~v 393 (401) T Consensus 330 ~~~~~~~~~~ll~~~gV~v~PG~~Fg--~~g~~~iRl~~~--~~~e~l~eal~RL~kl 383 (383) T TIGR03540 330 GYTSAEFAARLLEETGVVVTPGVGFG--EYGEGYIRISLT--VPDERLEEAVARIKKL 383 (383) T ss_pred CCCHHHHHHHHHHHCCEEEECCHHHC--CCCCCEEEEEEE--CCHHHHHHHHHHHHCC T ss_conf 98989999999983999998885328--899886999986--9999999999998449

HHsearch alignment for GI: 254780604 and conserved domain: TIGR03540