HHsearch alignment for GI: 254780604 and conserved domain: cd00378
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.91 E-value=4.6e-22 Score=161.83 Aligned_cols=329 Identities=20% Similarity=0.257 Sum_probs=218.4
Q ss_pred ECCCCCCCCCCCHHHHHHHHHH-HHHHCCCCCCCHHCCCCCCHHHHHH----HHHHHHCCCCCEEEE-ECCCCCHHHHHC
Q ss_conf 1144746677988999999999-9982987764100027640289999----988873499733774-056520122202
Q gi|254780604|r 50 WCSNDYLGMGKHPKVIENAQRT-FEKCGIGAGGTRNIAGTNYYHVMLE----KELATLHGKKAALIF-NSGYIANWATIG 123 (401)
Q Consensus 50 f~sndYLgL~~~p~v~~a~~~a-~~~~G~~~~~sr~~~G~~~~~~~LE----~~la~~~g~e~al~~-~SG~~An~~~i~ 123 (401)
T Consensus 25 IaSEN~~----S~~v~~a~gS~ltnkYaeG~pg~Ryy~G~~-~iD~iE~la~~rak~LF~a~~anVqp~SGs~AN~av~~ 99 (402)
T cd00378 25 IASENFT----SPAVMEAMGSDLTNKYAEGYPGKRYYGGCE-YVDEIEDLAIERAKKLFGAEYANVQPHSGSQANLAVYF 99 (402)
T ss_pred ECCCCCC----CHHHHHHHCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 5576647----999999856730154768899864667662-59999999999999983898747587873999999999
Q ss_pred CCCCCCCCEEEEH-HH---HHHHHHHHHHHHCCCC--EEEEC---C---CCHHHHHHHHHHCCCCCCCEEEC-CCCCCCC
Q ss_conf 3467788723421-32---1116752014531651--35316---7---99889888674066335623621-6743567
Q gi|254780604|r 124 TLCSQIDNIICFS-DS---HNHASIIEGINKARCK--KVIWN---H---NDLEDLEKNLAATDLSIPKIIIF-ESIYSMD 190 (401)
Q Consensus 124 ~l~~~~d~ii~~~-D~---~~HaSi~~g~~l~~a~--~~~f~---H---nD~~~Le~~L~~~~~~~~~iIv~-e~v~Sm~ 190 (401)
T Consensus 100 all~pGD~il~l~l~~GGHltHg~~~-~v~~~g~~~~~~~Y~vd~~~~~IDyd~~~~~a~~~k---PklIi~G~S~y~r- 174 (402)
T cd00378 100 ALLEPGDTIMGLDLSHGGHLTHGSFT-KVSASGKLFESVPYGVDPETGLIDYDALEKMALEFK---PKLIVAGASAYPR- 174 (402)
T ss_pred HHHCCCCEEEEECCCCCCCCCCCCCC-CCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCC---CCEEEECCCCCCC-
T ss_conf 97279998998664347775667787-720213567889632455658718999999998659---9699977715656-
Q ss_pred CCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCC-CCCEEEEECCH-HHHHHHHC
Q ss_conf 73368999999840147189971211001256025899999720200101101444322-22316875484-45000001
Q gi|254780604|r 191 GDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITIISGTLAKGF-GTFGGYIAASE-NLCDFIRS 268 (401)
Q Consensus 191 G~~apL~~l~~l~~~~~~~LivDEAH~~Gv~G~~G~G~~~~~g~~~~~di~~~TlsKa~-g~~GG~i~g~~-~~~~~l~~ 268 (401)
T Consensus 175 --~~d~~~~reIad~vgA~l~~D~aHi~GLI-A~g----~~p~Pl~~ADvvt~tTHKTlrGPrGGiIl~~~~~~~~kId~ 247 (402)
T cd00378 175 --PIDFKRFREIADEVGAYLLVDMAHVAGLV-AGG----VFPNPLPGADVVTTTTHKTLRGPRGGLILTRKGELAKKINS 247 (402)
T ss_pred --CCCHHHHHHHHHHCCCEEEEEHHHHHHHE-ECC----CCCCCCCCCEEEECCCCCCCCCCCCEEEEECCHHHHHHHHH
T ss_conf --55889999999870988985501234430-356----57997687657744643457899840899542789988546
Q ss_pred CCCCCCCCCCCCCHHHHHHHHH-HHHHH-CCHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCEEEEEECCHHHHHHHH
Q ss_conf 3322233344443147889987-64320-12016888899998766656644983037--89865999968979999999
Q gi|254780604|r 269 FASGFIFSTSLPPAIASASVTS-IQYIK-QHYDERKKYLERVKQLRHSLENKAIPCIP--NESHIIPIMVGDSHKCTQIS 344 (401)
Q Consensus 269 ~~~~~ifs~~l~p~~~aa~~~a-l~~l~-~~~~~~~~l~~~~~~l~~~L~~~g~~~~~--~~s~Ivpi~~g~~~~~~~~~ 344 (401)
T Consensus 248 avfPg~qggph-~h~iAa~Aval~Ea~~~~f~~Ya~qVv~NAkaLA~~L~~~G~~vv~ggTd~H~vlvd~~~~g~~G~~a 326 (402)
T cd00378 248 AVFPGLQGGPH-LHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERGFKVVSGGTDNHLVLVDLRPKGITGKAA 326 (402)
T ss_pred HHCCCCCCCHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCCCHHHH
T ss_conf 50986446745-66789999999998686689999999999999999998589479748998877999666456899999
Q ss_pred HHHHHHCCEEEEEECCCC---CCCCCCEEEEECCC----CCCHHHHHHHHHHHHHHHHH
Q ss_conf 999973790998404888---88887218996185----79999999999999999997
Q gi|254780604|r 345 NILLKEFGIYIQPINYPT---VAKKKERLRVTLTP----LHTDSDIEHLVSSLENVWQK 396 (401)
Q Consensus 345 ~~lL~e~Gi~v~~i~~Pt---Vp~g~~rlRi~l~a----~ht~edid~~~~~l~~v~~~ 396 (401)
T Consensus 327 ~~~Le~~gI~~Nkn~iP~d~~~~~~~sGiRiGT~a~T~rG~~e~em~~ia~lI~~~l~~ 385 (402)
T cd00378 327 EDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKD 385 (402)
T ss_pred HHHHHHCCEEECCCCCCCCCCCCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf 99999849087547488999999999761647789985899889999999999999817