HHsearch alignment for GI: 254780604 and conserved domain: cd01494
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.88 E-value=1.3e-22 Score=165.44 Aligned_cols=160 Identities=25% Similarity=0.252 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHC--CCCCEEEEECCCCCHHHHHCCCCCCCCCEEEEHHHHHHHHHHH-HHHHCCCCEEEECCCCH----H
Q ss_conf 899999888734--9973377405652012220234677887234213211167520-14531651353167998----8
Q gi|254780604|r 92 HVMLEKELATLH--GKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIE-GINKARCKKVIWNHNDL----E 164 (401)
Q Consensus 92 ~~~LE~~la~~~--g~e~al~~~SG~~An~~~i~~l~~~~d~ii~~~D~~~HaSi~~-g~~l~~a~~~~f~HnD~----~ 164 (401)
T Consensus 2 ~~e~e~~la~~~~~~~~~~i~~~sgt~A~~~~~~~l~~~gd~vi~--~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~ 79 (170)
T cd01494 2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIV--DANGHGSRYWVAAELAGAKPVPVPVDDAGYGGL 79 (170)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCCEEEE--CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 899999999984899898999566999999999997279999998--268437568999986598778723477875546
Q ss_pred HHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCHHHCC
Q ss_conf 98886740663356236216743567733689999998401471899712110012560258999997202001011014
Q gi|254780604|r 165 DLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITIISGT 244 (401)
Q Consensus 165 ~Le~~L~~~~~~~~~iIv~e~v~Sm~G~~apL~~l~~l~~~~~~~LivDEAH~~Gv~G~~G~G~~~~~g~~~~~di~~~T 244 (401)
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~l~~I~~la~~~gi~livD~a~~~g~~~~~~-----~~~~~~~~D~~~~s 154 (170)
T cd01494 80 DVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPG-----VLIPEGGADVVTFS 154 (170)
T ss_pred CHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCHHCCCCCCC-----CCCCCCCCEEEEEC
T ss_conf 8999999855999636887740147873201999973562079699994684321606666-----67777898599989
Q ss_pred CCCCCCCC-EEEEEC
Q ss_conf 44322223-168754
Q gi|254780604|r 245 LAKGFGTF-GGYIAA 258 (401)
Q Consensus 245 lsKa~g~~-GG~i~g 258 (401)
T Consensus 155 ~hK~lg~~g~g~l~~ 169 (170)
T cd01494 155 LHKNLGGEGGGVVIV 169 (170)
T ss_pred CCCCCCCCCEEEEEE
T ss_conf 866678985799998