HHsearch alignment for GI: 254780604 and conserved domain: cd01494

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.88  E-value=1.3e-22  Score=165.44  Aligned_cols=160  Identities=25%  Similarity=0.252  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHC--CCCCEEEEECCCCCHHHHHCCCCCCCCCEEEEHHHHHHHHHHH-HHHHCCCCEEEECCCCH----H
Q ss_conf             899999888734--9973377405652012220234677887234213211167520-14531651353167998----8
Q gi|254780604|r   92 HVMLEKELATLH--GKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIE-GINKARCKKVIWNHNDL----E  164 (401)
Q Consensus        92 ~~~LE~~la~~~--g~e~al~~~SG~~An~~~i~~l~~~~d~ii~~~D~~~HaSi~~-g~~l~~a~~~~f~HnD~----~  164 (401)
T Consensus         2 ~~e~e~~la~~~~~~~~~~i~~~sgt~A~~~~~~~l~~~gd~vi~--~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~   79 (170)
T cd01494           2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIV--DANGHGSRYWVAAELAGAKPVPVPVDDAGYGGL   79 (170)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCCEEEE--CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf             899999999984899898999566999999999997279999998--268437568999986598778723477875546


Q ss_pred             HHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCHHHCC
Q ss_conf             98886740663356236216743567733689999998401471899712110012560258999997202001011014
Q gi|254780604|r  165 DLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITIISGT  244 (401)
Q Consensus       165 ~Le~~L~~~~~~~~~iIv~e~v~Sm~G~~apL~~l~~l~~~~~~~LivDEAH~~Gv~G~~G~G~~~~~g~~~~~di~~~T  244 (401)
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~l~~I~~la~~~gi~livD~a~~~g~~~~~~-----~~~~~~~~D~~~~s  154 (170)
T cd01494          80 DVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPG-----VLIPEGGADVVTFS  154 (170)
T ss_pred             CHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCHHCCCCCCC-----CCCCCCCCEEEEEC
T ss_conf             8999999855999636887740147873201999973562079699994684321606666-----67777898599989


Q ss_pred             CCCCCCCC-EEEEEC
Q ss_conf             44322223-168754
Q gi|254780604|r  245 LAKGFGTF-GGYIAA  258 (401)
Q Consensus       245 lsKa~g~~-GG~i~g  258 (401)
T Consensus       155 ~hK~lg~~g~g~l~~  169 (170)
T cd01494         155 LHKNLGGEGGGVVIV  169 (170)
T ss_pred             CCCCCCCCCEEEEEE
T ss_conf             866678985799998