HHsearch alignment for GI: 254780604 and conserved domain: pfam03841

Probab=99.41  E-value=8.5e-12  Score=95.79  Aligned_cols=237  Identities=18%  Similarity=0.216  Sum_probs=152.4

Q ss_pred             CHHHHHHHHHHHHHHCCC----CCCCHHCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCCCCCCEEEEH
Q ss_conf             889999999999982987----7641000276402899999888734997337740565201222023467788723421
Q gi|254780604|r   61 HPKVIENAQRTFEKCGIG----AGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFS  136 (401)
Q Consensus        61 ~p~v~~a~~~a~~~~G~~----~~~sr~~~G~~~~~~~LE~~la~~~g~e~al~~~SG~~An~~~i~~l~~~~d~ii~~~  136 (401)
T Consensus        19 ~~~a~~a~~~~~~~y~nLE~dl~~g~R---G~R--~~~~~~ll~~ltgaE~a~vVNnnAaAv~L~l~~la~g~-evivSR   92 (367)
T pfam03841        19 SEEAVEAAKEAARHYSNLEYDLESGKR---GSR--DSHLEELLCELTGAEDALVVNNNAAAVLLVLNTLAQGK-EVIISR   92 (367)
T ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHCCC---CCH--HHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEC
T ss_conf             999999999986177203666741776---635--78999999986398659998783899999999875489-057755


Q ss_pred             HHHHH--HH--HHHHHHHCCCCEEEECCC---CHHHHHHHHHHCCCCCCCE-EECCCCCCCCCC--HHHHHHHHHHHHCC
Q ss_conf             32111--67--520145316513531679---9889888674066335623-621674356773--36899999984014
Q gi|254780604|r  137 DSHNH--AS--IIEGINKARCKKVIWNHN---DLEDLEKNLAATDLSIPKI-IIFESIYSMDGD--IAPIKEICDLADQY  206 (401)
Q Consensus       137 D~~~H--aS--i~~g~~l~~a~~~~f~Hn---D~~~Le~~L~~~~~~~~~i-Iv~e~v~Sm~G~--~apL~~l~~l~~~~  206 (401)
T Consensus        93 GelVeiGgsfRiPdim~~sGa~LvEVGtTNrT~l~DYe~AI~e---~Ta~llkVH~SN~~i~GFt~~v~~~el~~la~~~  169 (367)
T pfam03841        93 GELVEIGGSFRIPDIMKQSGARLVEVGTTNRTHLKDYEQAINE---NTALLMKVHTSNYRIQGFTKEVSLAELVALGKEH  169 (367)
T ss_pred             CEEECCCCCCCCHHHHHHCCCEEEEECCCCCCCHHHHHHHCCC---CCEEEEEEECCCCEECCCCCCCCHHHHHHHHHHC
T ss_conf             5451238754408999965978998256688898999987082---4618999942651223746779999999999876


Q ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHC----------CCCCCHHHCCCCCCCCC-CEEEEECCHHHHHHHHCCC--CCC
Q ss_conf             7189971211001256025899999720----------20010110144432222-3168754844500000133--222
Q gi|254780604|r  207 NAITYIDEVHAVGIHGSCGAGISEREGI----------MNRITIISGTLAKGFGT-FGGYIAASENLCDFIRSFA--SGF  273 (401)
Q Consensus       207 ~~~LivDEAH~~Gv~G~~G~G~~~~~g~----------~~~~di~~~TlsKa~g~-~GG~i~g~~~~~~~l~~~~--~~~  273 (401)
T Consensus       170 ~ip~i~DlG--SG~l~d-----~~~~gl~~Ep~v~~~l~~GaDlV~FSGDKLLGGPQAGII~Gkk~lI~~ikknPL~RAl  242 (367)
T pfam03841       170 GLPVYYDLG--SGSLVD-----LSQYGLPKEPTVQELLALGVDLVSFSGDKLLGGPQAGIIVGKKELIERLKKNPLKRAL  242 (367)
T ss_pred             CCCEEEECC--CCCEEC-----CCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCEEEECHHHHHHHHHCCHHHHH
T ss_conf             996799758--663112-----2001799999899999739988998676456898532476459999974647444544


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCC-------H------HHHHHHHHHHHHHHHHHHH
Q ss_conf             333444431478899876432012-------0------1688889999876665664
Q gi|254780604|r  274 IFSTSLPPAIASASVTSIQYIKQH-------Y------DERKKYLERVKQLRHSLEN  317 (401)
Q Consensus       274 ifs~~l~p~~~aa~~~al~~l~~~-------~------~~~~~l~~~~~~l~~~L~~  317 (401)
T Consensus       243 ----RvDKltLaaLeatL~~Yl~~~~~~~~IP~l~mL~~~~~~L~~rA~~l~~~l~~  295 (367)
T pfam03841       243 ----RVDKLTLAALEATLRLYLNPEKLYEKIPTLRLLTQPLKELRAKAERLQKLLKA  295 (367)
T ss_pred             ----CCCHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             ----45889999999999998490000011658998639999999999999999767