HHsearch alignment for GI: 254780604 and conserved domain: pfam04864

>pfam04864 Alliinase_C Allinase. Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesized from sulfoxide cysteine derivatives by alliinase (EC:4.4.1.4), whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system.
Probab=97.36  E-value=0.0048  Score=39.48  Aligned_cols=272  Identities=17%  Similarity=0.200  Sum_probs=129.6

Q ss_pred             CHHHHHHHHHHHHCCC-------CCEEEEECCCC-CHHHHHCCCCCCCC----CE-EEEHHHHHHHHHHHHH-HHCCCCE
Q ss_conf             0289999988873499-------73377405652-01222023467788----72-3421321116752014-5316513
Q gi|254780604|r   90 YYHVMLEKELATLHGK-------KAALIFNSGYI-ANWATIGTLCSQID----NI-ICFSDSHNHASIIEGI-NKARCKK  155 (401)
Q Consensus        90 ~~~~~LE~~la~~~g~-------e~al~~~SG~~-An~~~i~~l~~~~d----~i-i~~~D~~~HaSi~~g~-~l~~a~~  155 (401)
T Consensus        43 f~s~eLe~~Ir~LH~~VGNAvtdgr~iv~GtGsTQL~~Aav~ALs~~~~~~~~p~~VV-a-~aPyYs~y~~qT~~~~s~~  120 (363)
T pfam04864        43 FLSPELEREIRRLHRAVGNAVTDDRYIVFGTGSTQLLQAAVYALSPNVTPTSPPVKVV-A-AVPYYSVYKEQTSYFDSKG  120 (363)
T ss_pred             ECCHHHHHHHHHHHHHHCCCEECCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCEE-E-CCCCCCCCHHHHHHHCCCC
T ss_conf             4479999999999986334210661699917889999999986388999878873235-5-6876644287888845678


Q ss_pred             EEECCCCHHHHHHHHHHCCCCCCCE-EECCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-
Q ss_conf             5316799889888674066335623-62167435677336899999984014718997121100125602589999972-
Q gi|254780604|r  156 VIWNHNDLEDLEKNLAATDLSIPKI-IIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREG-  233 (401)
Q Consensus       156 ~~f~HnD~~~Le~~L~~~~~~~~~i-Iv~e~v~Sm~G~~apL~~l~~l~~~~~~~LivDEAH~~Gv~G~~G~G~~~~~g-  233 (401)
T Consensus       121 y~w~-Gda~~~~----~~~~~~~~IElVt-SPNNPdG~l---r~--aV~~g~~~k~i~D~aY-----------YWPhyTp  178 (363)
T pfam04864       121 YEWK-GNASAYV----NTDNPGPFIELVT-SPNNPDGTL---RE--AVIDGSEAKVIHDLAY-----------YWPHYTP  178 (363)
T ss_pred             CEEC-CCHHHHC----CCCCCCCEEEEEE-CCCCCCCHH---HH--HHCCCCCCEEEEEEEE-----------ECCCCCC
T ss_conf             4463-4689836----7999887289983-899984013---36--6506998418875200-----------0666667


Q ss_pred             C--CCCCCHHHCCCCCCCCCCE---EE-EECCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHC----CH---H-
Q ss_conf             0--2001011014443222231---68-75484450000013322233344443147889987643201----20---1-
Q gi|254780604|r  234 I--MNRITIISGTLAKGFGTFG---GY-IAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQ----HY---D-  299 (401)
Q Consensus       234 ~--~~~~di~~~TlsKa~g~~G---G~-i~g~~~~~~~l~~~~~~~ifs~~l~p~~~aa~~~al~~l~~----~~---~-  299 (401)
T Consensus       179 It~~aD~DIMLFTlSK~TGHAGsRiGWALVKD~~VakkM~~y~~lN--t~GvS~dSQlRa~kiLkvv~~~~~~~~~~~~i  256 (363)
T pfam04864       179 ITYPADEDIMLFTMSKYTGHAGSRFGWALVKDEEVAKKMVEYIELN--TIGVSKESQLRTLKILKVVLATCKTESGTMGF  256 (363)
T ss_pred             CCCCCCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf             6777767679898612236762523478863799999999997650--53068899999999999999763267662357


Q ss_pred             ---HHHHHHHHHHHHHHHHHHCCCCCCCC--------------CCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEEC-CC
Q ss_conf             ---68888999987666566449830378--------------9865999968979999999999973790998404-88
Q gi|254780604|r  300 ---ERKKYLERVKQLRHSLENKAIPCIPN--------------ESHIIPIMVGDSHKCTQISNILLKEFGIYIQPIN-YP  361 (401)
Q Consensus       300 ---~~~~l~~~~~~l~~~L~~~g~~~~~~--------------~s~Ivpi~~g~~~~~~~~~~~lL~e~Gi~v~~i~-~P  361 (401)
T Consensus       257 F~fg~~~m~~RW~~L~~~v~~S~~FsL~~~~p~yC~ff~~~~~~sPaf-aWlkCe~eed~DC~~~L~~~~I~~r~G~~F-  334 (363)
T pfam04864       257 FDFGYQTMRERWERLRELVSSSTRFSLQKLPPEYCNYFKKIREPSPAY-AWLKCEWEEDTDCYEVLREGKILTRSGERF-  334 (363)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCE-EEEEECCCCHHHHHHHHHHCCEECCCCCCC-
T ss_conf             899999999999999999711580772677877665423216899863-799726632017999998788645687645-


Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             88888721899618579999999999999999
Q gi|254780604|r  362 TVAKKKERLRVTLTPLHTDSDIEHLVSSLENV  393 (401)
Q Consensus       362 tVp~g~~rlRi~l~a~ht~edid~~~~~l~~v  393 (401)
T Consensus       335 g--a~~~YVRlSl--l~~~d~Fd~lleRL~~l  362 (363)
T pfam04864       335 G--ADSRYVRLSL--IKTQDDFDQLLQRLKSL  362 (363)
T ss_pred             C--CCCCEEEEEE--ECCHHHHHHHHHHHHHH
T ss_conf             8--8987699984--06887899999999854