HHsearch alignment for GI: 254780604 and conserved domain: pfam05889

>pfam05889 SLA_LP_auto_ag Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). This family consists of several eukaryotic and archaeal proteins which are related to the human soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway. Some archaeal members are annotated as being pyridoxal phosphate-dependent enzymes.
Probab=98.98  E-value=7.6e-08  Score=70.37  Aligned_cols=287  Identities=14%  Similarity=0.159  Sum_probs=147.4

Q ss_pred             HHHHHCCCC---CEEEEE--CCCCCHHHHHCCCC-CCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEC--------CCCH
Q ss_conf             888734997---337740--56520122202346-778872342132111675201453165135316--------7998
Q gi|254780604|r   98 ELATLHGKK---AALIFN--SGYIANWATIGTLC-SQIDNIICFSDSHNHASIIEGINKARCKKVIWN--------HNDL  163 (401)
Q Consensus        98 ~la~~~g~e---~al~~~--SG~~An~~~i~~l~-~~~d~ii~~~D~~~HaSi~~g~~l~~a~~~~f~--------HnD~  163 (401)
T Consensus        64 d~lr~~G~~s~~~~~vvP~aTGMsl-~~~L~~~~~rp~a~yViw-~RiDqKSc~Kai~~AGl~p~vVe~~~~~d~l~Td~  141 (389)
T pfam05889        64 DFLKLLGLREVKNCFVVPLATGMSL-LCMLSWRRKRPKAKYVIW-PRIDQKSSIKAAERAGFEPRLVETVLDGDYLITDV  141 (389)
T ss_pred             HHHHHCCCCCCCCEEEECCCCCHHH-HHHHHHHHHCCCCCEEEE-ECCCCCCHHHHHHHCCCEEEEEEEEECCCEEECCH
T ss_conf             9999829743165789504104799-999999855889978998-63555226899997697148875252288243589


Q ss_pred             HHHHHHHHHCCCCCCCEEE-CCCCCCCCCCHHH-HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCHH
Q ss_conf             8988867406633562362-1674356773368-9999998401471899712110012560258999997202001011
Q gi|254780604|r  164 EDLEKNLAATDLSIPKIII-FESIYSMDGDIAP-IKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITII  241 (401)
Q Consensus       164 ~~Le~~L~~~~~~~~~iIv-~e~v~Sm~G~~ap-L~~l~~l~~~~~~~LivDEAH~~Gv~G~~G~G~~~~~g~~~~~di~  241 (401)
T Consensus       142 ~~ie~~i~~~g~~~ilcVlsTTScF--aPR~pD~v~~IAklC~~~~IpHvVNnAYGlQ~--~~~~~~i~~a~r~GRVDa~  217 (389)
T pfam05889       142 NDVETIIEEKGEEVILAVLSTTSCF--APRSPDNVKEIAKICAEYDVPHLVNGAYGIQS--EETIRLIAAAHECGRVDAV  217 (389)
T ss_pred             HHHHHHHHHHCCCCEEEEEECCCCC--CCCCCCCHHHHHHHHHHCCCCEEECCHHHHHH--HHHHHHHHHHHHCCCCEEE
T ss_conf             9999999983877668998446656--99996679999999997499747843036617--9999999999863882189


Q ss_pred             HCCCCCCCCC--CEEEEEC-CHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHH
Q ss_conf             0144432222--3168754-844500000133222333444431478899876432012-01688889999876665664
Q gi|254780604|r  242 SGTLAKGFGT--FGGYIAA-SENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQH-YDERKKYLERVKQLRHSLEN  317 (401)
Q Consensus       242 ~~TlsKa~g~--~GG~i~g-~~~~~~~l~~~~~~~ifs~~l~p~~~aa~~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~  317 (401)
T Consensus       218 VQStDKNflVPVGGaIIas~d~~~i~~is~---~YPGRAS~sp~-lDlfITLLslG~~gy~~Ll~eRke~~~~l~e~L~~  293 (389)
T pfam05889       218 VQSLDKNFIVPVGGAIIAAFDESFIQEISE---EYPGRASARPS-KDKLITLLSLGCKAYLALMKEQKEMFPLLRELLKD  293 (389)
T ss_pred             EEECCCCEEEECCCEEEEECCHHHHHHHHH---CCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             970686625534874897088899999984---18997777407-99999999974888999999999999999999999


Q ss_pred             C----CCCCCCC-CCCEEE-EEEC-----CHHHHHHHHHHHHHHCCEEEEEECCCCCCCCC--------CEEEEECCCCC
Q ss_conf             4----9830378-986599-9968-----97999999999997379099840488888887--------21899618579
Q gi|254780604|r  318 K----AIPCIPN-ESHIIP-IMVG-----DSHKCTQISNILLKEFGIYIQPINYPTVAKKK--------ERLRVTLTPLH  378 (401)
Q Consensus       318 ~----g~~~~~~-~s~Ivp-i~~g-----~~~~~~~~~~~lL~e~Gi~v~~i~~PtVp~g~--------~rlRi~l~a~h  378 (401)
T Consensus       294 ~a~~~ge~lL~t~~N~IS~aitl~~l~~~~~~~~t~lgs~Lf-~r~VsG~RvV~~~~~~~~~~~~~y~~~Ylt~aaaiG~  372 (389)
T pfam05889       294 LAEEVGEQLLDVPHNPISSAMTLETLDEISKKGRTDLGSELF-SRRVTGARVVRSSDPFGTIEGCEYHGRYLNIASAIGM  372 (389)
T ss_pred             HHHHHCCEEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHHH-HCCCCCCEEECCCCCCCEEECCCCCCHHHHHHHHCCC
T ss_conf             999829875138999516888734556667554999999997-5678765166568885346167688367899987088


Q ss_pred             CHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999
Q gi|254780604|r  379 TDSDIEHLVSSLENVWQ  395 (401)
Q Consensus       379 t~edid~~~~~l~~v~~  395 (401)
T Consensus       373 ~~~dVd~f~~rL~k~l~  389 (389)
T pfam05889       373 KDEDVDYVIERLDEILE  389 (389)
T ss_pred             CHHHHHHHHHHHHHHHC
T ss_conf             68999999999998529