HHsearch alignment for GI: 254780604 and conserved domain: pfam05889
>pfam05889 SLA_LP_auto_ag Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). This family consists of several eukaryotic and archaeal proteins which are related to the human soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway. Some archaeal members are annotated as being pyridoxal phosphate-dependent enzymes.
Probab=98.98 E-value=7.6e-08 Score=70.37 Aligned_cols=287 Identities=14% Similarity=0.159 Sum_probs=147.4
Q ss_pred HHHHHCCCC---CEEEEE--CCCCCHHHHHCCCC-CCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEC--------CCCH
Q ss_conf 888734997---337740--56520122202346-778872342132111675201453165135316--------7998
Q gi|254780604|r 98 ELATLHGKK---AALIFN--SGYIANWATIGTLC-SQIDNIICFSDSHNHASIIEGINKARCKKVIWN--------HNDL 163 (401)
Q Consensus 98 ~la~~~g~e---~al~~~--SG~~An~~~i~~l~-~~~d~ii~~~D~~~HaSi~~g~~l~~a~~~~f~--------HnD~ 163 (401)
T Consensus 64 d~lr~~G~~s~~~~~vvP~aTGMsl-~~~L~~~~~rp~a~yViw-~RiDqKSc~Kai~~AGl~p~vVe~~~~~d~l~Td~ 141 (389)
T pfam05889 64 DFLKLLGLREVKNCFVVPLATGMSL-LCMLSWRRKRPKAKYVIW-PRIDQKSSIKAAERAGFEPRLVETVLDGDYLITDV 141 (389)
T ss_pred HHHHHCCCCCCCCEEEECCCCCHHH-HHHHHHHHHCCCCCEEEE-ECCCCCCHHHHHHHCCCEEEEEEEEECCCEEECCH
T ss_conf 9999829743165789504104799-999999855889978998-63555226899997697148875252288243589
Q ss_pred HHHHHHHHHCCCCCCCEEE-CCCCCCCCCCHHH-HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCHH
Q ss_conf 8988867406633562362-1674356773368-9999998401471899712110012560258999997202001011
Q gi|254780604|r 164 EDLEKNLAATDLSIPKIII-FESIYSMDGDIAP-IKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITII 241 (401)
Q Consensus 164 ~~Le~~L~~~~~~~~~iIv-~e~v~Sm~G~~ap-L~~l~~l~~~~~~~LivDEAH~~Gv~G~~G~G~~~~~g~~~~~di~ 241 (401)
T Consensus 142 ~~ie~~i~~~g~~~ilcVlsTTScF--aPR~pD~v~~IAklC~~~~IpHvVNnAYGlQ~--~~~~~~i~~a~r~GRVDa~ 217 (389)
T pfam05889 142 NDVETIIEEKGEEVILAVLSTTSCF--APRSPDNVKEIAKICAEYDVPHLVNGAYGIQS--EETIRLIAAAHECGRVDAV 217 (389)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCC--CCCCCCCHHHHHHHHHHCCCCEEECCHHHHHH--HHHHHHHHHHHHCCCCEEE
T ss_conf 9999999983877668998446656--99996679999999997499747843036617--9999999999863882189
Q ss_pred HCCCCCCCCC--CEEEEEC-CHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 0144432222--3168754-844500000133222333444431478899876432012-01688889999876665664
Q gi|254780604|r 242 SGTLAKGFGT--FGGYIAA-SENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQH-YDERKKYLERVKQLRHSLEN 317 (401)
Q Consensus 242 ~~TlsKa~g~--~GG~i~g-~~~~~~~l~~~~~~~ifs~~l~p~~~aa~~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~ 317 (401)
T Consensus 218 VQStDKNflVPVGGaIIas~d~~~i~~is~---~YPGRAS~sp~-lDlfITLLslG~~gy~~Ll~eRke~~~~l~e~L~~ 293 (389)
T pfam05889 218 VQSLDKNFIVPVGGAIIAAFDESFIQEISE---EYPGRASARPS-KDKLITLLSLGCKAYLALMKEQKEMFPLLRELLKD 293 (389)
T ss_pred EEECCCCEEEECCCEEEEECCHHHHHHHHH---CCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 970686625534874897088899999984---18997777407-99999999974888999999999999999999999
Q ss_pred C----CCCCCCC-CCCEEE-EEEC-----CHHHHHHHHHHHHHHCCEEEEEECCCCCCCCC--------CEEEEECCCCC
Q ss_conf 4----9830378-986599-9968-----97999999999997379099840488888887--------21899618579
Q gi|254780604|r 318 K----AIPCIPN-ESHIIP-IMVG-----DSHKCTQISNILLKEFGIYIQPINYPTVAKKK--------ERLRVTLTPLH 378 (401)
Q Consensus 318 ~----g~~~~~~-~s~Ivp-i~~g-----~~~~~~~~~~~lL~e~Gi~v~~i~~PtVp~g~--------~rlRi~l~a~h 378 (401)
T Consensus 294 ~a~~~ge~lL~t~~N~IS~aitl~~l~~~~~~~~t~lgs~Lf-~r~VsG~RvV~~~~~~~~~~~~~y~~~Ylt~aaaiG~ 372 (389)
T pfam05889 294 LAEEVGEQLLDVPHNPISSAMTLETLDEISKKGRTDLGSELF-SRRVTGARVVRSSDPFGTIEGCEYHGRYLNIASAIGM 372 (389)
T ss_pred HHHHHCCEEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHHH-HCCCCCCEEECCCCCCCEEECCCCCCHHHHHHHHCCC
T ss_conf 999829875138999516888734556667554999999997-5678765166568885346167688367899987088
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999
Q gi|254780604|r 379 TDSDIEHLVSSLENVWQ 395 (401)
Q Consensus 379 t~edid~~~~~l~~v~~ 395 (401)
T Consensus 373 ~~~dVd~f~~rL~k~l~ 389 (389)
T pfam05889 373 KDEDVDYVIERLDEILE 389 (389)
T ss_pred CHHHHHHHHHHHHHHHC
T ss_conf 68999999999998529