RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase [Candidatus Liberibacter asiaticus str. psy62] (401 letters) >gnl|CDD|36574 KOG1360, KOG1360, KOG1360, 5-aminolevulinate synthase [Coenzyme transport and metabolism]. Length = 570 Score = 486 bits (1253), Expect = e-138 Identities = 186/399 (46%), Positives = 277/399 (69%), Gaps = 2/399 (0%) Query: 2 DFEKFFKDQINYLHHEKRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSNDYLGMGKH 61 D+++FF+++I+ + YR F + +FP A S+ +KVT+WCSNDYLGM +H Sbjct: 128 DYDRFFREEIDKKKRDHSYRVFKNVNRLAKEFPLAHRYSEATEKKVTVWCSNDYLGMSRH 187 Query: 62 PKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWAT 121 P+V++ T ++ G GAGGTRNI+G + +HV LE ELA LH K+AAL+F+S ++AN +T Sbjct: 188 PEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDST 247 Query: 122 IGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKII 181 + TL ++ FSD NHAS+I+GI +R K I+ HNDL+ LE+ L ++ S+PKI+ Sbjct: 248 LFTLAKKLPGCEIFSDEGNHASMIQGIRNSRVPKHIFRHNDLDHLEQLLQSSPKSVPKIV 307 Query: 182 IFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITII 241 FE+++SMDG + P++E+CD+A +Y AIT++DEVHAVG++G GAG+ ER+G+M+++ II Sbjct: 308 AFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDII 367 Query: 242 SGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHY--D 299 SGTL K FG GGYIAA+ L D IRS+A+GFIF+TSLPP + + ++ +++ +K Sbjct: 368 SGTLGKAFGCVGGYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRV 427 Query: 300 ERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPIN 359 R+++ VK ++ L IP IPN SHIIP+ VGD+ Q S+IL+ + IY+Q IN Sbjct: 428 LRRQHQRNVKYVKQLLMELGIPVIPNPSHIIPVRVGDAALAKQASDILISKHNIYVQAIN 487 Query: 360 YPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKMN 398 YPTVA+ ERLR+ TP HT + LV++L +VW ++ Sbjct: 488 YPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEVG 526 >gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.. Length = 349 Score = 453 bits (1168), Expect = e-128 Identities = 169/352 (48%), Positives = 236/352 (67%), Gaps = 5/352 (1%) Query: 45 RKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHG 104 +KV +CSNDYLG+ HP+VIE A+ +K G+GAGG+R I+GT+ H LE+ELA HG Sbjct: 1 KKVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHG 60 Query: 105 KKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLE 164 K+AAL+F+SGY AN + TL + D I SDS NHASII+GI + KK I+ HND+E Sbjct: 61 KEAALVFSSGYAANDGVLSTLAGKGDLI--ISDSLNHASIIDGIRLSGAKKRIFKHNDME 118 Query: 165 DLEKNLAATD-LSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGS 223 DLEK L K+I+ E +YSMDGDIAP+ E+ DLA +Y AI ++DE H+VG++G Sbjct: 119 DLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGP 178 Query: 224 CGAGISEREGIMNRITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAI 283 G G+ E G+ + + II GTL K FG GGYIA S+ L D++RS+A GFIFSTSLPPA+ Sbjct: 179 HGRGVEEFGGLTDDVDIIMGTLGKAFGAVGGYIAGSKELIDYLRSYARGFIFSTSLPPAV 238 Query: 284 ASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGD-SHKCTQ 342 A+A++ +++ ++ + R++ E V+ LR L+ P + SHIIP ++GD K Sbjct: 239 AAAALAALEVLQGGPERRERLQENVRYLRRGLKELGFPVGGSPSHIIPPLIGDDPAKAVA 298 Query: 343 ISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVW 394 S+ LL+ GIY+Q I YPTV + RLR++L+ HT DI+ L+ +L+ V Sbjct: 299 FSDALLER-GIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEVG 349 >gnl|CDD|30505 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]. Length = 388 Score = 420 bits (1080), Expect = e-118 Identities = 167/397 (42%), Positives = 243/397 (61%), Gaps = 12/397 (3%) Query: 1 MDFEKFFKDQINYLHHEKRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSNDYLGMGK 60 MDF F + + L E YR L Q AI RKV +CSNDYLG+ Sbjct: 1 MDFLSFLRQALQALKAEGLYRGLRALDRRQ---GLAIR---ADGRKVLNFCSNDYLGLAS 54 Query: 61 HPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWA 120 HP++IE A+ + G+GAGG+R I+GT+ HV LE+ELA G +AAL+F+SG++AN Sbjct: 55 HPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFSSGFVANLG 114 Query: 121 TIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAA--TDLSIP 178 + L + D I FSD NHASII+GI +R + + HNDL+ LE L + + Sbjct: 115 LLSALLKKGDLI--FSDELNHASIIDGIRLSRAEVRRFKHNDLDHLEALLEEARENGARR 172 Query: 179 KIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNR- 237 K+I+ E ++SMDGDIAP+ E+ +LA++Y A+ Y+DE HAVG+ G G G++E G+ Sbjct: 173 KLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEE 232 Query: 238 ITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQH 297 + II GTL K G+ GGYIA S L D++R+ A FIFST+LPPA+A+A++ +++ +++ Sbjct: 233 VDIIVGTLGKALGSSGGYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEG 292 Query: 298 YDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQP 357 + R++ E R L+ + +P+ES IIP+++GD + + S LL+E GIY+ Sbjct: 293 PERRERLQELAAFFRSLLKALGLVLLPSESPIIPVILGDEERALEASRALLEE-GIYVSA 351 Query: 358 INYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVW 394 I PTV K RLR+TLT HT+ DI+ L +L V Sbjct: 352 IRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEVG 388 >gnl|CDD|36573 KOG1359, KOG1359, KOG1359, Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]. Length = 417 Score = 250 bits (640), Expect = 4e-67 Identities = 120/356 (33%), Positives = 194/356 (54%), Gaps = 8/356 (2%) Query: 44 SRKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLH 103 +K+ +C+N+YLG+ HP++I Q+ E+ G G R I GT H +LE ++A H Sbjct: 66 DKKILNFCANNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFH 125 Query: 104 GKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDL 163 G++ +++ S + AN + + D + FSD NHASII+GI CK+ + H D+ Sbjct: 126 GREDTILYPSCFDANAGAFEAILTPEDAV--FSDELNHASIIDGIR--LCKR--YRHVDV 179 Query: 164 EDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGS 223 DLE L + K+++ + ++SMDGDIAP++EI LA +Y A+ +IDE HA G G Sbjct: 180 FDLEHCLISACKMRLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGE 239 Query: 224 CGAGISEREGIMNRITIISGTLAKGFG-TFGGYIAASENLCDFIRSFASGFIFSTSLPPA 282 G G +E G+M + II+ TL K G GGY + L +R + ++FS SLPPA Sbjct: 240 TGRGTAEEFGVMGDVDIINSTLGKALGGASGGYTTGPKPLISLLRQRSRPYLFSNSLPPA 299 Query: 283 IASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQ 342 + + + + E + ++ R +E I P+M+GD+ ++ Sbjct: 300 VVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAAGFTISGASHPICPVMLGDARLASK 359 Query: 343 ISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKMN 398 +++ LLK GIY+ +YP V K K R+RV ++ HT+ DI+ L+ + V + +N Sbjct: 360 MADELLKR-GIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFLN 414 >gnl|CDD|143923 pfam00155, Aminotran_1_2, Aminotransferase class I and II. Length = 351 Score = 218 bits (558), Expect = 2e-57 Identities = 95/368 (25%), Positives = 165/368 (44%), Gaps = 39/368 (10%) Query: 45 RKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHG 104 SN+YLG P V + + AGGTRN+ G L + LA G Sbjct: 1 TDKINLGSNEYLG-DTLPAVAKAEKD------ALAGGTRNLYGPTDGLPELREALAKFLG 53 Query: 105 --------KKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKV 156 ++AA++F SG AN + L + + I + +AS I A + V Sbjct: 54 RSPVLKLDREAAVVFGSGAGANIEALIFLLANPGDAI-LVPAPTYASYIRIARLAGGEVV 112 Query: 157 IWN-------HNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLAD---QY 206 + H D + LE L PK+++ ES ++ G +AP++E+ L D ++ Sbjct: 113 RYPLYDSNDFHLDFDALEAALK----EKPKVVLHESPHNPTGTVAPLEELEKLLDLAKEH 168 Query: 207 NAITYIDEVHAVGIHGSCGAGISEREGIMNRI-TIISGTLAKGFGTFG---GYIAASENL 262 N + +DE +A + GS A ++ R + ++ G+ +K FG G GYI + + Sbjct: 169 NILLLVDEAYAGFVFGSPDA-VATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAAV 227 Query: 263 CDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPC 322 +R A F ST L A A+A + + + R++ ER LR LE + Sbjct: 228 ISQLRKLARPFYSSTHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAAGLSV 287 Query: 323 IPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSD 382 +P+++ + D +++ +LL+E G+Y+ P + P V LR+T+ T+ + Sbjct: 288 LPSQAGFFLLTGLDPETAKELAQVLLEEVGVYVTPGSSPGV---PGWLRITVA-GGTEEE 343 Query: 383 IEHLVSSL 390 +E L+ ++ Sbjct: 344 LEELLEAI 351 >gnl|CDD|36571 KOG1357, KOG1357, KOG1357, Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]. Length = 519 Score = 168 bits (426), Expect = 3e-42 Identities = 105/364 (28%), Positives = 181/364 (49%), Gaps = 29/364 (7%) Query: 52 SNDYLGMGK-----HPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKK 106 S +YLG + ++ +F+K G+ +R+ AGT H LE+ +A G + Sbjct: 143 SYNYLGFAQSVGPCAEASLK----SFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGVE 198 Query: 107 AALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDL 166 A++F+ G+ N I +L + II SD NHAS+I G + ++ HND++ L Sbjct: 199 DAIVFSMGFATNSMNIPSLLGKGSLII--SDELNHASLITGARLSGATTRVFRHNDMQGL 256 Query: 167 EKNLA-ATDLSIPK--------IIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHA 217 E+ L A PK +I E IYSM+G I + E+ L +Y A Y+DE H+ Sbjct: 257 ERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHS 316 Query: 218 VGIHGSCGAGISEREGIMNR-ITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFS 276 +G G+ G G+ E G+ + I+ GT K FG GGYIA S+ L D++R+ + +++ Sbjct: 317 IGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAGGYIAGSKELIDYLRTPSPSALYA 376 Query: 277 TSLPPAIASASVTSIQYI--KQHYDERKKYLERVKQ----LRHSLENKAIPCIPNE-SHI 329 TSL P +A +TS+++I + + ++ +ER+ + R L+ N S + Sbjct: 377 TSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGFIVYGNNDSPV 436 Query: 330 IPIMVGDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSS 389 +P+++ K S +L+ I + + +P + R R L+ HT D++ + Sbjct: 437 VPLLLYGPAKIVAFSREMLER-NIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEV 495 Query: 390 LENV 393 ++ V Sbjct: 496 IDRV 499 >gnl|CDD|36572 KOG1358, KOG1358, KOG1358, Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]. Length = 467 Score = 140 bits (353), Expect = 7e-34 Identities = 95/378 (25%), Positives = 177/378 (46%), Gaps = 30/378 (7%) Query: 45 RKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHG 104 + V + S ++LG+ ++ ++ E A T K G+G+ G R GT H+ LEK +A G Sbjct: 94 KDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMG 153 Query: 105 KKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLE 164 + A++++ G+ + I + D I F D + +I +G+ +R + HND+E Sbjct: 154 TEDAIVYSYGFSTIESAIPAFSKRGD--IIFVDEAVNFAIQKGLQLSRSTISYFKHNDME 211 Query: 165 DLE---KNLAATDLSIPKI------IIFESIYSMDGDIAPIKEICDLADQYNAITYIDEV 215 DLE D PK I+ E +Y+ GDI P+ EI L ++Y +DE Sbjct: 212 DLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDES 271 Query: 216 HAVGIHGSCGAGISEREGI-MNRITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFI 274 + G+ G G G++E G+ + I I++ ++ + GG+ A + D R SG+ Sbjct: 272 LSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGGGFCAGKSFIADHQRLSGSGYC 331 Query: 275 FSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPN--ESHIIPI 332 FS SLPP +A A++ +I + + + + +V + +L + + + ES II + Sbjct: 332 FSASLPPYLAGAAIKAILIEEWNPEIVQPLRAKVAKFHAALSSNSGFIVSGSPESPIIHL 391 Query: 333 MVGDSHKCTQISNILLKEF-------GIYIQPINYPTVAKKKER------LRVTLTPLHT 379 + S+ + LL+E G+ + Y +K ER +R+ ++ + Sbjct: 392 QLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKY---LEKLERCPIPPSIRICVSAGMS 448 Query: 380 DSDIEHLVSSLENVWQKM 397 + ++E ++ V + Sbjct: 449 EEELERAAELIKEVASAV 466 >gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.. Length = 369 Score = 53.4 bits (129), Expect = 1e-07 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 10/123 (8%) Query: 95 LEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSD----SHNHASIIEGINK 150 LEK+LA L G +AAL F+SG A + L D+++ D ++ + Sbjct: 45 LEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLG 104 Query: 151 ARCKKVIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAIT 210 V + +D E LE + K++ ES + + I+ I +LA ++ A+ Sbjct: 105 IEVTFV--DPDDPEALEAAIKPE----TKLVYVESPTNPTLKVVDIEAIAELAHEHGALL 158 Query: 211 YID 213 +D Sbjct: 159 VVD 161 >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V).. Length = 170 Score = 52.0 bits (125), Expect = 3e-07 Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 16/168 (9%) Query: 95 LEKELATL--HGKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKAR 152 LE++LA L G A+ SG AN A + L D +I ++ H + A Sbjct: 5 LEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGH-GSRYWVAAELAG 63 Query: 153 CKKVIWNHNDLED------LEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQY 206 K V +D + + L A +I+ + G + P+KEI +A +Y Sbjct: 64 AKPVPVPVDDAGYGGLDVAILEELKAKP--NVALIVITPNTTSGGVLVPLKEIRKIAKEY 121 Query: 207 NAITYIDEVHAVGIHGSCGAGISEREGIMNRITIISGTLAKGFGTFGG 254 + +D A G S G+ EG +++ +L K G GG Sbjct: 122 GILLLVDAASAGG--ASPAPGVLIPEG---GADVVTFSLHKNLGGEGG 164 >gnl|CDD|30971 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]. Length = 396 Score = 51.4 bits (123), Expect = 5e-07 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 9/136 (6%) Query: 89 NYYHVMLEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSD----SHNHASI 144 N LE+ LA L G + A F+SG A + L D+++ D ++ Sbjct: 62 NPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEK 121 Query: 145 IEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLAD 204 I V D D E AA K++ E+ + ++ I I LA Sbjct: 122 ILQKFGVEVTFV-----DPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAK 176 Query: 205 QYNAITYIDEVHAVGI 220 Y A+ +D A + Sbjct: 177 AYGALVVVDNTFATPV 192 >gnl|CDD|35276 KOG0053, KOG0053, KOG0053, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]. Length = 409 Score = 48.3 bits (115), Expect = 3e-06 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 2/120 (1%) Query: 95 LEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCK 154 LE +A L G AL+F+SG A + L D+I+ D + I + Sbjct: 82 LESGIAALEGAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFG 141 Query: 155 KVIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDE 214 + D++DL+K L A + K + ES + + I+++ LA +Y + +D Sbjct: 142 GEG-DFVDVDDLKKILKAIKENT-KAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDN 199 >gnl|CDD|144709 pfam01212, Beta_elim_lyase, Beta-eliminating lyase. Length = 288 Score = 45.7 bits (109), Expect = 2e-05 Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 23/142 (16%) Query: 89 NYYHVMLEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNH------A 142 LE +A L GK+AAL SG +AN + C + D +IC +H + Sbjct: 33 TVNR--LEDRVAELFGKEAALFVPSGTMANQLALMAHCRRGDEVICGEPAHIYFDETGGH 90 Query: 143 SIIEGINKARCKKVIWNHN----DLEDLEKNLAATDLS----IPKIIIFESIYSMDGDIA 194 + + G DLEDLE + I + + S G + Sbjct: 91 AELGGAQPVPLP----GAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVV 146 Query: 195 P---IKEICDLADQYNAITYID 213 ++EI +A ++ ++D Sbjct: 147 SLEELREIRAIAREHGIPLHLD 168 >gnl|CDD|144590 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 381 Score = 45.3 bits (108), Expect = 3e-05 Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 12/124 (9%) Query: 95 LEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSD----SHNHASIIEGINK 150 LE+ +A L G +AAL F+SG A +A + L D+++ D ++ + E + Sbjct: 57 LEERIAALEGGEAALAFSSGMAAIFAALLALLKAGDHVVATDDLYGGTYR---LFEKVLP 113 Query: 151 ARCKKVIW-NHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAI 209 +V + + +DL+ LE + K + E+ + + I+ I +A ++ A+ Sbjct: 114 RFGIEVTFVDPSDLDALEAAIK----PNTKAVFLETPTNPLLKVVDIEAIAKIAKKHGAL 169 Query: 210 TYID 213 +D Sbjct: 170 VVVD 173 >gnl|CDD|30866 COG0520, CsdB, Selenocysteine lyase [Amino acid transport and metabolism]. Length = 405 Score = 44.5 bits (105), Expect = 5e-05 Identities = 55/307 (17%), Positives = 108/307 (35%), Gaps = 59/307 (19%) Query: 130 DNIICFSDSHNHASIIEGINKARCK--KVIW------NHNDLEDLEKNLAATDLSIPKII 181 D I+ H H++I+ A+ KV DL+ LEK + K++ Sbjct: 112 DEIVVSDLEH-HSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPK----TKLV 166 Query: 182 IFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVG---------------------I 220 + ++ G + P+KEI +LA ++ A+ +D A G + Sbjct: 167 ALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWL 226 Query: 221 HGSCGAGI-SEREGIMNRITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSL 279 G G G+ R+ ++ + + F GG I + + + Sbjct: 227 LGPTGIGVLYVRKELLEEL--------EPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTP 278 Query: 280 PPAIASASVTSIQY--------IKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIP 331 A A ++ Y I+ H E +YL +E P + I+ Sbjct: 279 NIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPP-DADRGGIVS 337 Query: 332 IMVGDSHKCTQISNILLKEFGIYIQ-----PINYPTVAKKKERLRVTLTPLHTDSDIEHL 386 V H ++ +L ++ GI ++ + +R +L +T+ D++ L Sbjct: 338 FNVKGIH-PHDVATLLDEK-GIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRL 395 Query: 387 VSSLENV 393 + +L+ Sbjct: 396 LEALKKA 402 >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein.. Length = 350 Score = 44.6 bits (106), Expect = 5e-05 Identities = 50/340 (14%), Positives = 115/340 (33%), Gaps = 56/340 (16%) Query: 88 TNYYHVM----LEKELATLHGKKAA--------LIFNSGYIANWATIGTLCSQIDNIICF 135 YY L + +A G++ ++ N A + L + D ++ Sbjct: 30 LGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVP 89 Query: 136 SDS-HNHASIIEGINKARCKKVIWN-HNDLEDLEKNLAATDLSIPKIIIFES-------I 186 + + + + A V + + L A K++ + + Sbjct: 90 DPTYPGYEAAAR-LAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAV 148 Query: 187 YSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITIISGTLA 246 S + ++E+ +LA ++ + DE +A ++ R I+ + + Sbjct: 149 LSEEE----LEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYER-VIVLRSFS 203 Query: 247 KGFGTFG---GYIAASENLC-DFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDE-R 301 K FG G GY+ A + ++ S A+A+ + ++H +E R Sbjct: 204 KTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAA--LDDGEEHLEELR 261 Query: 302 KKYLERVKQLRHSLENKAIPCIPNESHIIP-----IMVG-----DSHKCTQISNILLKEF 351 ++Y R L +L+ + + P + + D + LL E Sbjct: 262 ERYRRRRDALLEALKE-----LGPLVVVKPSGGFFLWLDLPEGDDEEFLER----LLLEA 312 Query: 352 GIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLE 391 G+ ++P + + +R++ + ++E + L Sbjct: 313 GVVVRPGSAFGEGGEG-FVRLSFATP--EEELEEALERLA 349 >gnl|CDD|30350 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]. Length = 432 Score = 43.2 bits (102), Expect = 1e-04 Identities = 50/263 (19%), Positives = 97/263 (36%), Gaps = 38/263 (14%) Query: 161 NDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKE----ICDLADQYNAITYIDEVH 216 NDLE LE+ I +I+ E + G + P + +L +++ A+ DEV Sbjct: 185 NDLEALEEAFEEYGDDIAAVIV-EPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVI 243 Query: 217 AVGIHGSCGAGISEREGIMNRITIISGTLAKGF--GTFGGYIAASENLCDFIRSFASGFI 274 G + G G G+ +T + + G G FGG E L + +G Sbjct: 244 T-GFRVALG-GAQGYYGVEPDLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAG-- 299 Query: 275 FSTSLPPAIASASVTSIQYIKQH---YDERKKYLERVKQ-LRHSLENKAIP-CIPNESHI 329 + S P +A + +++ + Y+ ER+ + LR + E IP + + Sbjct: 300 -TLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSM 358 Query: 330 IPIMVG--------DSHKC-TQISNILLKEF---GIYIQPINYPTVAKKKERLRVTLTPL 377 I D+ + + G+Y+ P + L+ Sbjct: 359 FGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQFEAG---------FLSTA 409 Query: 378 HTDSDIEHLVSSLENVWQKMNRY 400 HT+ DI+ + + + ++++ Sbjct: 410 HTEEDIDRTLEAADEAFKELAGE 432 >gnl|CDD|32191 COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism]. Length = 342 Score = 43.3 bits (102), Expect = 1e-04 Identities = 44/223 (19%), Positives = 82/223 (36%), Gaps = 23/223 (10%) Query: 59 GKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIAN 118 G P++ E ++ G + LE+ +A L GK+AAL SG AN Sbjct: 11 GPTPEMREALAAA-------NAVGDDVYGEDPTTNALEQRIAELFGKEAALFVPSGTQAN 63 Query: 119 WATIGTLCSQIDNIICFSDSHNH------ASIIEGINKARCKKVIWNHNDLEDLEKNLAA 172 + C +++IC +H + G K ED+E + Sbjct: 64 QLALAAHCQPGESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRP 123 Query: 173 TDL--SIPKIIIFESIYSMDGDIAP---IKEICDLADQYNAITYIDEVHAVGIHGSCGAG 227 D+ + + + E+ + G + P ++ I + ++ ++D A + G Sbjct: 124 DDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMD--GARLANALVALG 181 Query: 228 ISEREGIMNRITIISGTLAKGFGTFGGYIAASENLCDFIRSFA 270 ++ + I + + +S L KG G G I DF + Sbjct: 182 VALKT-IKSYVDSVSFCLTKGGGAPVGAIVFGNR--DFAKRAR 221 >gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.. Length = 413 Score = 41.8 bits (99), Expect = 3e-04 Identities = 79/407 (19%), Positives = 127/407 (31%), Gaps = 101/407 (24%) Query: 49 IWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYH--VMLEKELATLHGKK 106 I N LG HP+V+E + K T G Y V L + L L + Sbjct: 45 IGVLN--LGHN-HPEVVEALKEQLAK------LTHFSLGFFYNEPAVELAELLLALTPEG 95 Query: 107 AALIF--NSGYIAN-------WA-----------------TIGTL--CSQIDNIICFSDS 138 +F NSG A A T+G L F Sbjct: 96 LDKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPL 155 Query: 139 HNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKI--IIFESIYSMDGDIAP- 195 + + R +DLE LE+ L ++ +I E I G I P Sbjct: 156 LPGVLHVPYPYRYRPPA--ELADDLEALEEALEEH---PEEVAAVIVEPIQGEGGVIVPP 210 Query: 196 ---IKEICDLADQYNAITYIDEVHA----VGIHGSCGAGISEREGIMNRITIISGTLAKG 248 +K + +L ++ + DEV G + E G+ I TL KG Sbjct: 211 PGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAF-----EHFGVEPDIV----TLGKG 261 Query: 249 FGTFGGY----IAASENLCDFIRSFASGFIFST-SLPPAIASASVTSIQYIKQHYDERKK 303 G GG + E + D G T P +A++ ++ + E + Sbjct: 262 LG--GGLPLGAVLGREEIMDAF-PAGPGLHGGTFGGNPLACAAALAVLEVL-----EEEG 313 Query: 304 YLERVKQLRHSLENKAIPCIPNESHIIPI-----MVG------------DSHKCTQISNI 346 LE +L L + + + M+G D +I Sbjct: 314 LLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKA 373 Query: 347 LLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENV 393 L+ G+ ++P + RL L T+ +I+ + +L+ Sbjct: 374 ALER-GLLLRPSGGNVI-----RLLPPLI--ITEEEIDEGLDALDEA 412 >gnl|CDD|36582 KOG1368, KOG1368, KOG1368, Threonine aldolase [Amino acid transport and metabolism]. Length = 384 Score = 41.1 bits (96), Expect = 6e-04 Identities = 65/313 (20%), Positives = 124/313 (39%), Gaps = 26/313 (8%) Query: 95 LEKELATLHGKKAALIFNSGYIANWATIGTLCSQI-DNIICFSDSHNH------ASIIEG 147 LE+ +A L GK+A L SG + N I C Q II +H H S + G Sbjct: 61 LEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCHQRGSEIIVGDRAHIHRYEQGGISQLAG 120 Query: 148 INKARCKKVIWNHNDLEDLEKNLAATDLSI----PKIIIFESIYSMDGDIA-PIKE---I 199 ++ K DLED+E + K+I E+ ++ G P++E + Sbjct: 121 VHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRV 180 Query: 200 CDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITIISGTLAKGFGT-FGGYIAA 258 LA ++ ++D + G + + + ++I L+KG G G I Sbjct: 181 KALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSI---CLSKGLGAPVGSVIVG 237 Query: 259 SENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENK 318 S++ D R F +A+A++ ++ K + + + ++ E Sbjct: 238 SKDFIDKARHFRKALGGGMRQSGVLAAAALVALDENVPLLRADHKRAKELAEYINTPEEI 297 Query: 319 AIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLH 378 + E++I+ +++ + + L++ GI + + R+R+ L Sbjct: 298 RVEVPAVETNIVNMVLCQARLTAEELCKFLEKNGILL-------MGGASRRIRIVLHHQV 350 Query: 379 TDSDIEHLVSSLE 391 TD D+E++ S L Sbjct: 351 TDEDVEYVKSVLS 363 >gnl|CDD|31301 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]. Length = 386 Score = 40.9 bits (96), Expect = 7e-04 Identities = 67/373 (17%), Positives = 126/373 (33%), Gaps = 107/373 (28%) Query: 96 EKELATLHGKKAA-LIFNSGYI--ANWATIGTLCSQID-----NIICFSDSHNHASIIEG 147 +++A L G +IF SG N A G + + +II + + H +++ Sbjct: 50 REQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHII--TSAIEHPAVLNT 107 Query: 148 INKARCK--KVIW---NHN---DLEDLEKNLAATDLSIPKIIIFESIY--SMDGDIAPIK 197 + +V + + N DLE LE+ L P I+ ++ + G I PI Sbjct: 108 CRYLERQGFEVTYLPVDSNGLVDLEQLEEALR------PDTILVSIMHANNETGTIQPIA 161 Query: 198 EICDLADQYNAITYIDEVHAVG--------------------IHGSCGAG-ISEREGIMN 236 EI ++ + + ++D V AVG G G G + R G+ Sbjct: 162 EIGEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYVRPGVRL 221 Query: 237 RITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQ 296 I G G G + +EN+ P I + + + Sbjct: 222 EPLIHGG------GQERGLRSGTENV------------------PGIVGFG-KAAEIAVE 256 Query: 297 HYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNI---------- 346 +E R+++LR LE+ + IP+ + + D + I N Sbjct: 257 ELEEE---NARLRKLRDRLEDGLLEIIPD----VYLNGDDEPRLPNILNFSFPGVEGESL 309 Query: 347 --LLKEFGIYI-------QPINYP---------TVAKKKERLRVTLTPLHTDSDIEHLVS 388 L GI + P + +R +L T+ +I+ Sbjct: 310 LLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAE 369 Query: 389 SLENVWQKMNRYA 401 +L+ + +++ + Sbjct: 370 ALKEIIKRLRELS 382 >gnl|CDD|30509 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]. Length = 447 Score = 40.6 bits (95), Expect = 7e-04 Identities = 67/298 (22%), Positives = 99/298 (33%), Gaps = 69/298 (23%) Query: 61 HPKVIENAQRTFEKCGIGAGGTRNIAGTNYYH----VMLEKELATL---HGKKAALIFNS 113 HP+V+E +R K N T + V L ++L L G K NS Sbjct: 74 HPRVVEAVKRQLAKL--------NHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNS 125 Query: 114 GYIANWA------------------------TIGTL---CSQIDNIICFSDSHNHASIIE 146 G A A T+G L S+ F + Sbjct: 126 GAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVP 185 Query: 147 GINKARCKKVIW---NHND-LEDLEKNLAATDLSIPKI--IIFESIYSMDGDIAP----I 196 N RC I +D LE +E+ L ++ ++ II E I G I P + Sbjct: 186 YPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFL 245 Query: 197 KEICDLADQYNAITYIDEVHA-VGIHGSCGAGISEREGIMNRITIISGTLAKGF--GTFG 253 K + L ++ + DEV G G A E G+ I TLAK G Sbjct: 246 KALRKLCREHGILLIADEVQTGFGRTGKMFA--FEHFGVEPDIV----TLAKSLGGGLPL 299 Query: 254 GYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQL 311 + + D+ G F + P +A++ + I E + LER +L Sbjct: 300 SAVVGRAEIMDWPPGGHGGT-FGGN--PVACAAALAVLDVI-----EEENLLERAAEL 349 >gnl|CDD|32700 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]. Length = 426 Score = 38.3 bits (89), Expect = 0.004 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 12/124 (9%) Query: 95 LEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIIC----FSDSHNHASIIEGINK 150 LE+ +A L G AAL SG A I L DNI+ + ++N + K Sbjct: 67 LEERIAALEGGVAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYN---LFSHTLK 123 Query: 151 ARCKKVIW-NHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAI 209 +V + + +D E+ E + K + E+I + D+ I+ I ++A ++ Sbjct: 124 RLGIEVRFVDPDDPENFEAAIDENT----KAVFAETIGNPGLDVLDIEAIAEIAHRHGVP 179 Query: 210 TYID 213 +D Sbjct: 180 LIVD 183 >gnl|CDD|30785 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]. Length = 393 Score = 37.6 bits (87), Expect = 0.005 Identities = 61/312 (19%), Positives = 116/312 (37%), Gaps = 37/312 (11%) Query: 109 LIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHN------- 161 ++ A + L + D ++ + S + A K V + Sbjct: 93 IVTAGAKEALFLAFLALLNPGDEVLIPD--PGYPSYEAAVKLAGGKPVPVPLDEEENGFK 150 Query: 162 -DLEDLEKNLAATDLSIPKIIIFES-------IYSMDGDIAPIKEICDLADQYNAITYID 213 DLEDLE + K II S +YS + +K I +LA +++ I D Sbjct: 151 PDLEDLEAAITPK----TKAIILNSPNNPTGAVYSKEE----LKAIVELAREHDIIIISD 202 Query: 214 EV-HAVGIHGSCGAGISEREGIMNRITIISGTLAKGFGTFG---GYIAA-SENLCDFIRS 268 E+ + G+ I E G +R TI + +K +G G G++ E L +R Sbjct: 203 EIYEELVYDGAEHPSILELAGARDR-TITINSFSKTYGMTGWRIGWVVGPPEELIAALRK 261 Query: 269 FASGFIFSTSLPP-AIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKA-IPCI--P 324 S P A A++ Q + + R++Y ER L +L + + P Sbjct: 262 LKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPP 321 Query: 325 NESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIE 384 + + + + + + LL+E G+ + P + + +R++L ++ +E Sbjct: 322 EGAFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLA--TSEETLE 379 Query: 385 HLVSSLENVWQK 396 + L + Sbjct: 380 EALRRLARFLAE 391 >gnl|CDD|144011 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 371 Score = 36.8 bits (86), Expect = 0.010 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%) Query: 162 DLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVG 219 DL+ LEK L K++ + ++ G + P++EI LA +Y A+ +D AVG Sbjct: 128 DLDALEKLLTPR----TKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQAVG 181 >gnl|CDD|34597 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]. Length = 404 Score = 35.5 bits (82), Expect = 0.029 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 36/164 (21%) Query: 161 NDLEDLEK----NLAATDLSIPKIIIFESIYSMDGDIAP----IKEICDLADQYNAITYI 212 ND+E LE + AA +I E I G I +K + +L D++ A+ + Sbjct: 172 NDIEALEAAIDEDTAA--------VIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLIL 223 Query: 213 DEVHAVGIHGSCGAGI-SEREGIMNRITIISGTLAKGFGTFGGY----IAASENLCDFIR 267 DEV G+ G G E G+ I TLAK G GG+ + A+E + Sbjct: 224 DEVQ-TGL-GRTGKLFAYEHYGVEPDIL----TLAKALG--GGFPIGAMLATEEIASAFT 275 Query: 268 SFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQL 311 G F + P + ++ ++ + + + LE V++ Sbjct: 276 PGDHGSTFGGN--PLACAVALAVLEVLLE-----EGLLENVREK 312 >gnl|CDD|36762 KOG1549, KOG1549, KOG1549, Cysteine desulfurase NFS1 [Amino acid transport and metabolism]. Length = 428 Score = 35.3 bits (81), Expect = 0.031 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 159 NHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAV 218 + L D+ K A S +++ + + G + P+KEI + + ++D AV Sbjct: 164 EDSGLVDISKLREAIR-SKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAV 222 Query: 219 G 219 G Sbjct: 223 G 223 >gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.. Length = 338 Score = 33.5 bits (77), Expect = 0.10 Identities = 32/142 (22%), Positives = 50/142 (35%), Gaps = 36/142 (25%) Query: 95 LEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHN----------HASI 144 LE A L GK+AAL SG AN + ++IC +H + + Sbjct: 37 LEARAAELFGKEAALFVPSGTAANQLALAAHTQPGGSVICHETAHIYTDEAGAPEFLSGV 96 Query: 145 ----IEGINKARCKKVIWNHNDLEDLEKNLAATDL---SIPKIIIFE------SIYSMDG 191 + G N EDLE + D P ++ E ++Y +D Sbjct: 97 KLLPVPGENGKL---------TPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLD- 146 Query: 192 DIAPIKEICDLADQYNAITYID 213 +K I LA + ++D Sbjct: 147 ---ELKAISALAKENGLPLHLD 165 >gnl|CDD|30424 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]. Length = 383 Score = 32.5 bits (74), Expect = 0.23 Identities = 41/231 (17%), Positives = 76/231 (32%), Gaps = 43/231 (18%) Query: 191 GDIAPIKEICDLADQYNAITYIDEVHAVGIH----GSCGAGISEREGIMNRITIISGTLA 246 G + P+KEI A ++ A+ +D V ++G G + I+G+ Sbjct: 145 GVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDV-----------AITGS-Q 192 Query: 247 KGFGTFGG--YIAASENLCDFIRSFAS-GFIFS----------------TSLPPAIASAS 287 K G G ++A SE + I F T I + Sbjct: 193 KALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALR 252 Query: 288 VTSIQYIKQHYDER-KKYLERVKQLRHSLENKAIPCIPNESHIIPIMVG----DSHKCTQ 342 +++ + R ++ + LR LE + + P + + + Sbjct: 253 EALDLILEEGLEARIARHRRLAEALRAGLEALGLELFADPERRSPTVTAIKVPEGVDDKK 312 Query: 343 ISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENV 393 + LLKE+G+ I P K R+ D+ +++LE Sbjct: 313 VRRALLKEYGVEIAGGQGPLKGKI---FRIGHMGNVRPEDVLAALAALEAA 360 >gnl|CDD|30510 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]. Length = 449 Score = 31.7 bits (72), Expect = 0.43 Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 26/148 (17%) Query: 196 IKEICDLADQYNAITYIDEVHAVGIHGSCGAGI-SEREGIMNRITIISGTLAKGFGTFGG 254 +K + ++ D+Y + DEV A G G G E GI+ I LAKG GG Sbjct: 238 LKRVREICDKYGILLIADEV-ATGF-GRTGKMFACEHAGIVPDIL----CLAKGLT--GG 289 Query: 255 YIAASENLC----------DFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKKY 304 Y+ S L +F G +S + P +A++ ++ + E + Sbjct: 290 YLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGN--PLACAAALANLDIL-----EEEDL 342 Query: 305 LERVKQLRHSLENKAIPCIPNESHIIPI 332 LERV ++ L+ + + + + Sbjct: 343 LERVAEIGAYLQAGLQAALADHPLVGDV 370 >gnl|CDD|30748 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]. Length = 374 Score = 31.4 bits (71), Expect = 0.48 Identities = 61/345 (17%), Positives = 116/345 (33%), Gaps = 59/345 (17%) Query: 95 LEKELATLHGKKAALIFNSGYIANWATIGTL-CSQIDNIIC--FSDSHNHASII-EGINK 150 E+ A G K A+ +SG A + L D +I F+ +++ G Sbjct: 39 FEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKP 98 Query: 151 --ARCKKVIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNA 208 N D + +E + K II + G + I LA ++ Sbjct: 99 VFVDIDPDTLNI-DPDLIEAAIT----PRTKAIIPVHLA---GQPCDMDAIMALAKRHGL 150 Query: 209 ITYIDEVHAVGIHGSCGAGISEREGIMNRITIISGTLAKGFGTF-GGYIAA-SENLCDFI 266 D A HG+ G ++ G I S K T GG + E L + Sbjct: 151 PVIEDAAQA---HGATYKG--KKVGSFGDIGAFSFHATKNLTTGEGGAVVTNDEELAEKA 205 Query: 267 RSFAS-GFI-------------FSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLR 312 RS + G ++ L A+ + ++ + + + R++ + + Sbjct: 206 RSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIYAEAL 265 Query: 313 HSLENKAIPCIPNES----HIIPIMVGDSHKCTQISNILLKEFGI----YIQPINYPTVA 364 L +P P+ + H+ I+V + LKE G+ Y +P++ Sbjct: 266 KGLPGITLPPEPDGAVHAWHLYTILVDEEGISRDALMESLKEAGVGAVVYFRPLHLQPAY 325 Query: 365 KKKERLRVTLT-------------PLH---TDSDIEHLVSSLENV 393 ++ PLH ++ D++ ++ +L+ V Sbjct: 326 RQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEV 370 >gnl|CDD|30425 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]. Length = 460 Score = 30.0 bits (67), Expect = 1.3 Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 6/87 (6%) Query: 131 NIICFSDSH---NHASIIEGINKARCKKVIWNHN-DLEDLEKNLAATDLSIPKIIIFESI 186 NI+C +H A+ G+ R V ++ D++ LE+ A + +I +++ + Sbjct: 159 NIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEE--AIDENTIGGVVVGTAG 216 Query: 187 YSMDGDIAPIKEICDLADQYNAITYID 213 + G I I+E+ D+A++Y ++D Sbjct: 217 TTDTGSIDDIEELADIAEEYGIWLHVD 243 >gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.. Length = 373 Score = 29.4 bits (67), Expect = 1.7 Identities = 9/29 (31%), Positives = 15/29 (51%) Query: 191 GDIAPIKEICDLADQYNAITYIDEVHAVG 219 G I P+KEI ++A + +D + G Sbjct: 153 GTINPVKEIGEIAHEAGVPVLVDGAQSAG 181 >gnl|CDD|30423 COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]. Length = 293 Score = 29.0 bits (65), Expect = 2.6 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 10/69 (14%) Query: 79 AGGTRNIAGTNYYHVMLE----------KELATLHGKKAALIFNSGYIANWATIGTLCSQ 128 A GT+ + G +E G A++IF A A + + + Sbjct: 30 AYGTKIVGGVTPGKGGQTILGLPVFNTVEEAVKETGANASVIFVPPPFAADAILEAIDAG 89 Query: 129 IDNIICFSD 137 I ++ ++ Sbjct: 90 IKLVVIITE 98 >gnl|CDD|38730 KOG3521, KOG3521, KOG3521, Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]. Length = 846 Score = 27.7 bits (61), Expect = 5.2 Identities = 9/25 (36%), Positives = 12/25 (48%) Query: 362 TVAKKKERLRVTLTPLHTDSDIEHL 386 V KK +RL+V PL D + Sbjct: 459 KVQKKADRLKVIRPPLLMDKLVCQY 483 >gnl|CDD|30813 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]. Length = 596 Score = 28.0 bits (62), Expect = 5.2 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 6/52 (11%) Query: 195 PIKEICDLADQYN----AITYIDEVHAVGIHG--SCGAGISEREGIMNRITI 240 + DL +Q I +IDE+ AVG G G ERE +N++ + Sbjct: 227 GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLV 278 >gnl|CDD|31968 COG1782, COG1782, Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]. Length = 637 Score = 27.9 bits (62), Expect = 5.4 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%) Query: 281 PAIASASVTSI-QYIKQHYDERKKYLERV 308 P I S ++ SI + ++ ER++ L V Sbjct: 138 PPIQSRTIKSIREILRSERKERREILRNV 166 >gnl|CDD|37678 KOG2467, KOG2467, KOG2467, Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]. Length = 477 Score = 27.5 bits (61), Expect = 6.0 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 7/60 (11%) Query: 162 DLEDLEKNLAATDLSIPKIIIF-ESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGI 220 D + LEK AT PK+II S YS D A ++I D+ A D H G+ Sbjct: 177 DYDKLEKT--ATLFR-PKLIIAGTSAYSRLIDYARFRKIA---DKVGAYLMADMAHISGL 230 >gnl|CDD|99982 cd03811, GT1_WabH_like, This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.. Length = 353 Score = 27.7 bits (62), Expect = 6.6 Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 13/91 (14%) Query: 128 QIDNIICFSDSHNH-ASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKIIIFESI 186 + D +I + + +++ + K ++W HN L +L ++I + Sbjct: 81 KPDVVISHLTTTPNVLALL--AARLGTKLIVWEHNSL-----SLELKRKLRLLLLIRKLY 133 Query: 187 YSMDGDIAPIKEIC-DLADQYNA----ITYI 212 D +A + + DL I I Sbjct: 134 RRADKIVAVSEGVKEDLLKLLGIPPDKIEVI 164 >gnl|CDD|145594 pfam02535, Zip, ZIP Zinc transporter. The ZIP family consists of zinc transport proteins and many putative metal transporters. The main contribution to this family is from the Arabidopsis thaliana ZIP protein family these proteins are responsible for zinc uptake in the plant. Also found within this family are C. elegans proteins of unknown function which are annotated as being similar to human growth arrest inducible gene product, although this protein in not found within this family. Length = 312 Score = 27.3 bits (61), Expect = 7.8 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 10/56 (17%) Query: 240 IISGTLAKGFGTFGGYI------AASENLCDFIRSFASGFIFSTS----LPPAIAS 285 I + + G + + S L F+ +FA+G + T+ LP A+ + Sbjct: 8 IFAILITSLIGLLLPLLIPLISKSRSSKLLSFLLAFAAGVLLGTAFLHLLPEALEA 63 >gnl|CDD|40003 KOG4806, KOG4806, KOG4806, Uncharacterized conserved protein [Function unknown]. Length = 454 Score = 27.4 bits (60), Expect = 7.9 Identities = 11/37 (29%), Positives = 16/37 (43%) Query: 18 KRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSND 54 R F L E+Y + N DE +KV + S + Sbjct: 284 TYIRQFVVLPGERYLMRFEPSNDDEALQKVMVAASTE 320 >gnl|CDD|32165 COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]. Length = 557 Score = 27.2 bits (60), Expect = 8.6 Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 26/137 (18%) Query: 105 KKAALIFNSGY---------IANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKK 155 + AA +F + + AN A I + + D ++ D + H SI G+ A Sbjct: 77 ELAARVFGADHTYFVVNGTSTANKAVINAVLTPGDKVLV--DRNCHKSIHHGLILAGATP 134 Query: 156 V-----------IWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLAD 204 V I LE ++ L A + +I Y DG +++I +L Sbjct: 135 VYLEPSRNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTY--DGVCYNLRKIVELLH 192 Query: 205 QYNAITYIDEVHAVGIH 221 Y A DE H H Sbjct: 193 HYGAWVLYDEAH--PAH 207 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.321 0.137 0.412 Gapped Lambda K H 0.267 0.0714 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,012,249 Number of extensions: 268972 Number of successful extensions: 742 Number of sequences better than 10.0: 1 Number of HSP's gapped: 712 Number of HSP's successfully gapped: 55 Length of query: 401 Length of database: 6,263,737 Length adjustment: 96 Effective length of query: 305 Effective length of database: 4,189,273 Effective search space: 1277728265 Effective search space used: 1277728265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.2 bits)