RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase
[Candidatus Liberibacter asiaticus str. psy62]
         (401 letters)



>gnl|CDD|36574 KOG1360, KOG1360, KOG1360, 5-aminolevulinate synthase [Coenzyme
           transport and metabolism].
          Length = 570

 Score =  486 bits (1253), Expect = e-138
 Identities = 186/399 (46%), Positives = 277/399 (69%), Gaps = 2/399 (0%)

Query: 2   DFEKFFKDQINYLHHEKRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSNDYLGMGKH 61
           D+++FF+++I+    +  YR F  +     +FP A   S+   +KVT+WCSNDYLGM +H
Sbjct: 128 DYDRFFREEIDKKKRDHSYRVFKNVNRLAKEFPLAHRYSEATEKKVTVWCSNDYLGMSRH 187

Query: 62  PKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWAT 121
           P+V++    T ++ G GAGGTRNI+G + +HV LE ELA LH K+AAL+F+S ++AN +T
Sbjct: 188 PEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDST 247

Query: 122 IGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKII 181
           + TL  ++     FSD  NHAS+I+GI  +R  K I+ HNDL+ LE+ L ++  S+PKI+
Sbjct: 248 LFTLAKKLPGCEIFSDEGNHASMIQGIRNSRVPKHIFRHNDLDHLEQLLQSSPKSVPKIV 307

Query: 182 IFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITII 241
            FE+++SMDG + P++E+CD+A +Y AIT++DEVHAVG++G  GAG+ ER+G+M+++ II
Sbjct: 308 AFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDII 367

Query: 242 SGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHY--D 299
           SGTL K FG  GGYIAA+  L D IRS+A+GFIF+TSLPP + + ++ +++ +K      
Sbjct: 368 SGTLGKAFGCVGGYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRV 427

Query: 300 ERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPIN 359
            R+++   VK ++  L    IP IPN SHIIP+ VGD+    Q S+IL+ +  IY+Q IN
Sbjct: 428 LRRQHQRNVKYVKQLLMELGIPVIPNPSHIIPVRVGDAALAKQASDILISKHNIYVQAIN 487

Query: 360 YPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKMN 398
           YPTVA+  ERLR+  TP HT   +  LV++L +VW ++ 
Sbjct: 488 YPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEVG 526


>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
           phosphate (PLP)-dependent aspartate aminotransferase
           superfamily (fold I). The major groups in this CD
           corresponds to serine palmitoyltransferase (SPT),
           5-aminolevulinate synthase (ALAS),
           8-amino-7-oxononanoate synthase (AONS), and
           2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
           responsible for the condensation of L-serine with
           palmitoyl-CoA to produce 3-ketodihydrospingosine, the
           reaction of the first step in sphingolipid biosynthesis.
           ALAS is involved in heme biosynthesis; it catalyzes the
           synthesis of 5-aminolevulinic acid from glycine and
           succinyl-coenzyme A. AONS catalyses the decarboxylative
           condensation of l-alanine and pimeloyl-CoA in the first
           committed step of biotin biosynthesis. KBL catalyzes the
           second reaction step of the metabolic degradation
           pathway for threonine converting 2-amino-3-ketobutyrate,
           to glycine and acetyl-CoA. The members of this CD are
           widely found in all three forms of life..
          Length = 349

 Score =  453 bits (1168), Expect = e-128
 Identities = 169/352 (48%), Positives = 236/352 (67%), Gaps = 5/352 (1%)

Query: 45  RKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHG 104
           +KV  +CSNDYLG+  HP+VIE A+   +K G+GAGG+R I+GT+  H  LE+ELA  HG
Sbjct: 1   KKVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHG 60

Query: 105 KKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLE 164
           K+AAL+F+SGY AN   + TL  + D I   SDS NHASII+GI  +  KK I+ HND+E
Sbjct: 61  KEAALVFSSGYAANDGVLSTLAGKGDLI--ISDSLNHASIIDGIRLSGAKKRIFKHNDME 118

Query: 165 DLEKNLAATD-LSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGS 223
           DLEK L         K+I+ E +YSMDGDIAP+ E+ DLA +Y AI ++DE H+VG++G 
Sbjct: 119 DLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGP 178

Query: 224 CGAGISEREGIMNRITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAI 283
            G G+ E  G+ + + II GTL K FG  GGYIA S+ L D++RS+A GFIFSTSLPPA+
Sbjct: 179 HGRGVEEFGGLTDDVDIIMGTLGKAFGAVGGYIAGSKELIDYLRSYARGFIFSTSLPPAV 238

Query: 284 ASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGD-SHKCTQ 342
           A+A++ +++ ++   + R++  E V+ LR  L+    P   + SHIIP ++GD   K   
Sbjct: 239 AAAALAALEVLQGGPERRERLQENVRYLRRGLKELGFPVGGSPSHIIPPLIGDDPAKAVA 298

Query: 343 ISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVW 394
            S+ LL+  GIY+Q I YPTV +   RLR++L+  HT  DI+ L+ +L+ V 
Sbjct: 299 FSDALLER-GIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEVG 349


>gnl|CDD|30505 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
           enzymes [Coenzyme metabolism].
          Length = 388

 Score =  420 bits (1080), Expect = e-118
 Identities = 167/397 (42%), Positives = 243/397 (61%), Gaps = 12/397 (3%)

Query: 1   MDFEKFFKDQINYLHHEKRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSNDYLGMGK 60
           MDF  F +  +  L  E  YR    L   Q     AI       RKV  +CSNDYLG+  
Sbjct: 1   MDFLSFLRQALQALKAEGLYRGLRALDRRQ---GLAIR---ADGRKVLNFCSNDYLGLAS 54

Query: 61  HPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWA 120
           HP++IE A+    + G+GAGG+R I+GT+  HV LE+ELA   G +AAL+F+SG++AN  
Sbjct: 55  HPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFSSGFVANLG 114

Query: 121 TIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAA--TDLSIP 178
            +  L  + D I  FSD  NHASII+GI  +R +   + HNDL+ LE  L     + +  
Sbjct: 115 LLSALLKKGDLI--FSDELNHASIIDGIRLSRAEVRRFKHNDLDHLEALLEEARENGARR 172

Query: 179 KIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNR- 237
           K+I+ E ++SMDGDIAP+ E+ +LA++Y A+ Y+DE HAVG+ G  G G++E  G+    
Sbjct: 173 KLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEE 232

Query: 238 ITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQH 297
           + II GTL K  G+ GGYIA S  L D++R+ A  FIFST+LPPA+A+A++ +++ +++ 
Sbjct: 233 VDIIVGTLGKALGSSGGYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEG 292

Query: 298 YDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQP 357
            + R++  E     R  L+   +  +P+ES IIP+++GD  +  + S  LL+E GIY+  
Sbjct: 293 PERRERLQELAAFFRSLLKALGLVLLPSESPIIPVILGDEERALEASRALLEE-GIYVSA 351

Query: 358 INYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVW 394
           I  PTV K   RLR+TLT  HT+ DI+ L  +L  V 
Sbjct: 352 IRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEVG 388


>gnl|CDD|36573 KOG1359, KOG1359, KOG1359, Glycine
           C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase
           [Amino acid transport and metabolism].
          Length = 417

 Score =  250 bits (640), Expect = 4e-67
 Identities = 120/356 (33%), Positives = 194/356 (54%), Gaps = 8/356 (2%)

Query: 44  SRKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLH 103
            +K+  +C+N+YLG+  HP++I   Q+  E+ G G    R I GT   H +LE ++A  H
Sbjct: 66  DKKILNFCANNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFH 125

Query: 104 GKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDL 163
           G++  +++ S + AN      + +  D +  FSD  NHASII+GI    CK+  + H D+
Sbjct: 126 GREDTILYPSCFDANAGAFEAILTPEDAV--FSDELNHASIIDGIR--LCKR--YRHVDV 179

Query: 164 EDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGS 223
            DLE  L +      K+++ + ++SMDGDIAP++EI  LA +Y A+ +IDE HA G  G 
Sbjct: 180 FDLEHCLISACKMRLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGE 239

Query: 224 CGAGISEREGIMNRITIISGTLAKGFG-TFGGYIAASENLCDFIRSFASGFIFSTSLPPA 282
            G G +E  G+M  + II+ TL K  G   GGY    + L   +R  +  ++FS SLPPA
Sbjct: 240 TGRGTAEEFGVMGDVDIINSTLGKALGGASGGYTTGPKPLISLLRQRSRPYLFSNSLPPA 299

Query: 283 IASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQ 342
           +   +  +   +     E +      ++ R  +E            I P+M+GD+   ++
Sbjct: 300 VVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAAGFTISGASHPICPVMLGDARLASK 359

Query: 343 ISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKMN 398
           +++ LLK  GIY+   +YP V K K R+RV ++  HT+ DI+ L+ +   V + +N
Sbjct: 360 MADELLKR-GIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFLN 414


>gnl|CDD|143923 pfam00155, Aminotran_1_2, Aminotransferase class I and II. 
          Length = 351

 Score =  218 bits (558), Expect = 2e-57
 Identities = 95/368 (25%), Positives = 165/368 (44%), Gaps = 39/368 (10%)

Query: 45  RKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHG 104
                  SN+YLG    P V +  +         AGGTRN+ G       L + LA   G
Sbjct: 1   TDKINLGSNEYLG-DTLPAVAKAEKD------ALAGGTRNLYGPTDGLPELREALAKFLG 53

Query: 105 --------KKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKV 156
                   ++AA++F SG  AN   +  L +   + I    +  +AS I     A  + V
Sbjct: 54  RSPVLKLDREAAVVFGSGAGANIEALIFLLANPGDAI-LVPAPTYASYIRIARLAGGEVV 112

Query: 157 IWN-------HNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLAD---QY 206
            +        H D + LE  L       PK+++ ES ++  G +AP++E+  L D   ++
Sbjct: 113 RYPLYDSNDFHLDFDALEAALK----EKPKVVLHESPHNPTGTVAPLEELEKLLDLAKEH 168

Query: 207 NAITYIDEVHAVGIHGSCGAGISEREGIMNRI-TIISGTLAKGFGTFG---GYIAASENL 262
           N +  +DE +A  + GS  A ++ R  +      ++ G+ +K FG  G   GYI  +  +
Sbjct: 169 NILLLVDEAYAGFVFGSPDA-VATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAAV 227

Query: 263 CDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPC 322
              +R  A  F  ST L  A A+A    +    +  + R++  ER   LR  LE   +  
Sbjct: 228 ISQLRKLARPFYSSTHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAAGLSV 287

Query: 323 IPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSD 382
           +P+++    +   D     +++ +LL+E G+Y+ P + P V      LR+T+    T+ +
Sbjct: 288 LPSQAGFFLLTGLDPETAKELAQVLLEEVGVYVTPGSSPGV---PGWLRITVA-GGTEEE 343

Query: 383 IEHLVSSL 390
           +E L+ ++
Sbjct: 344 LEELLEAI 351


>gnl|CDD|36571 KOG1357, KOG1357, KOG1357, Serine palmitoyltransferase
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 519

 Score =  168 bits (426), Expect = 3e-42
 Identities = 105/364 (28%), Positives = 181/364 (49%), Gaps = 29/364 (7%)

Query: 52  SNDYLGMGK-----HPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKK 106
           S +YLG  +         ++    +F+K G+    +R+ AGT   H  LE+ +A   G +
Sbjct: 143 SYNYLGFAQSVGPCAEASLK----SFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGVE 198

Query: 107 AALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDL 166
            A++F+ G+  N   I +L  +   II  SD  NHAS+I G   +     ++ HND++ L
Sbjct: 199 DAIVFSMGFATNSMNIPSLLGKGSLII--SDELNHASLITGARLSGATTRVFRHNDMQGL 256

Query: 167 EKNLA-ATDLSIPK--------IIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHA 217
           E+ L  A     PK        +I  E IYSM+G I  + E+  L  +Y A  Y+DE H+
Sbjct: 257 ERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHS 316

Query: 218 VGIHGSCGAGISEREGIMNR-ITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFS 276
           +G  G+ G G+ E  G+    + I+ GT  K FG  GGYIA S+ L D++R+ +   +++
Sbjct: 317 IGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAGGYIAGSKELIDYLRTPSPSALYA 376

Query: 277 TSLPPAIASASVTSIQYI--KQHYDERKKYLERVKQ----LRHSLENKAIPCIPNE-SHI 329
           TSL P +A   +TS+++I  +   +  ++ +ER+ +     R  L+        N  S +
Sbjct: 377 TSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGFIVYGNNDSPV 436

Query: 330 IPIMVGDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSS 389
           +P+++    K    S  +L+   I +  + +P     + R R  L+  HT  D++  +  
Sbjct: 437 VPLLLYGPAKIVAFSREMLER-NIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEV 495

Query: 390 LENV 393
           ++ V
Sbjct: 496 IDRV 499


>gnl|CDD|36572 KOG1358, KOG1358, KOG1358, Serine palmitoyltransferase
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 467

 Score =  140 bits (353), Expect = 7e-34
 Identities = 95/378 (25%), Positives = 177/378 (46%), Gaps = 30/378 (7%)

Query: 45  RKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHG 104
           + V  + S ++LG+ ++ ++ E A  T  K G+G+ G R   GT   H+ LEK +A   G
Sbjct: 94  KDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMG 153

Query: 105 KKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLE 164
            + A++++ G+    + I     + D  I F D   + +I +G+  +R     + HND+E
Sbjct: 154 TEDAIVYSYGFSTIESAIPAFSKRGD--IIFVDEAVNFAIQKGLQLSRSTISYFKHNDME 211

Query: 165 DLE---KNLAATDLSIPKI------IIFESIYSMDGDIAPIKEICDLADQYNAITYIDEV 215
           DLE         D   PK       I+ E +Y+  GDI P+ EI  L ++Y     +DE 
Sbjct: 212 DLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDES 271

Query: 216 HAVGIHGSCGAGISEREGI-MNRITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFI 274
            + G+ G  G G++E  G+ +  I I++ ++     + GG+ A    + D  R   SG+ 
Sbjct: 272 LSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGGGFCAGKSFIADHQRLSGSGYC 331

Query: 275 FSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPN--ESHIIPI 332
           FS SLPP +A A++ +I   + + +  +    +V +   +L + +   +    ES II +
Sbjct: 332 FSASLPPYLAGAAIKAILIEEWNPEIVQPLRAKVAKFHAALSSNSGFIVSGSPESPIIHL 391

Query: 333 MVGDSHKCTQISNILLKEF-------GIYIQPINYPTVAKKKER------LRVTLTPLHT 379
            +  S+   +    LL+E        G+ +    Y    +K ER      +R+ ++   +
Sbjct: 392 QLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKY---LEKLERCPIPPSIRICVSAGMS 448

Query: 380 DSDIEHLVSSLENVWQKM 397
           + ++E     ++ V   +
Sbjct: 449 EEELERAAELIKEVASAV 466


>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP
           dependent enzyme and catalyzes the committed step of
           methionine biosynthesis. This pathway is unique to
           microorganisms and plants, rendering the enzyme an
           attractive target for the development of antimicrobials
           and herbicides. This subgroup also includes
           cystathionine gamma-lyases (CGL), O-acetylhomoserine
           sulfhydrylases and O-acetylhomoserine thiol lyases.
           CGL's are very similar to CGS's. Members of this group
           are widely distributed among all three forms of life..
          Length = 369

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 10/123 (8%)

Query: 95  LEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSD----SHNHASIIEGINK 150
           LEK+LA L G +AAL F+SG  A    +  L    D+++   D    ++     +     
Sbjct: 45  LEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLG 104

Query: 151 ARCKKVIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAIT 210
                V  + +D E LE  +        K++  ES  +    +  I+ I +LA ++ A+ 
Sbjct: 105 IEVTFV--DPDDPEALEAAIKPE----TKLVYVESPTNPTLKVVDIEAIAELAHEHGALL 158

Query: 211 YID 213
            +D
Sbjct: 159 VVD 161


>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
           type I) of pyridoxal phosphate (PLP)-dependent enzymes.
           PLP combines with an alpha-amino acid to form a compound
           called a Schiff base or aldimine intermediate, which
           depending on the reaction, is the substrate in four
           kinds of reactions (1) transamination (movement of amino
           groups), (2) racemization (redistribution of
           enantiomers), (3) decarboxylation (removing COOH
           groups), and (4) various side-chain reactions depending
           on the enzyme involved. Pyridoxal phosphate (PLP)
           dependent enzymes were previously classified into alpha,
           beta and gamma classes, based on the chemical
           characteristics (carbon atom involved) of the reaction
           they catalyzed. The availability of several structures
           allowed a comprehensive analysis of  the evolutionary
           classification of PLP dependent enzymes, and it was
           found that the functional classification did not always
           agree with the evolutionary history of these enzymes.
           Structure and sequence analysis has revealed that the
           PLP dependent enzymes can be classified into four major
           groups of different evolutionary origin: aspartate
           aminotransferase superfamily (fold type I), tryptophan
           synthase beta superfamily (fold type II), alanine
           racemase superfamily (fold type III), and D-amino acid
           superfamily (fold type IV) and Glycogen phophorylase
           family (fold type V)..
          Length = 170

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 16/168 (9%)

Query: 95  LEKELATL--HGKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKAR 152
           LE++LA L   G   A+   SG  AN A +  L    D +I  ++ H  +        A 
Sbjct: 5   LEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGH-GSRYWVAAELAG 63

Query: 153 CKKVIWNHNDLED------LEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQY 206
            K V    +D         + + L A       +I+     +  G + P+KEI  +A +Y
Sbjct: 64  AKPVPVPVDDAGYGGLDVAILEELKAKP--NVALIVITPNTTSGGVLVPLKEIRKIAKEY 121

Query: 207 NAITYIDEVHAVGIHGSCGAGISEREGIMNRITIISGTLAKGFGTFGG 254
             +  +D   A G   S   G+   EG      +++ +L K  G  GG
Sbjct: 122 GILLLVDAASAGG--ASPAPGVLIPEG---GADVVTFSLHKNLGGEGG 164


>gnl|CDD|30971 COG0626, MetC, Cystathionine beta-lyases/cystathionine
           gamma-synthases [Amino acid transport and metabolism].
          Length = 396

 Score = 51.4 bits (123), Expect = 5e-07
 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 9/136 (6%)

Query: 89  NYYHVMLEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSD----SHNHASI 144
           N     LE+ LA L G + A  F+SG  A    +  L    D+++   D    ++     
Sbjct: 62  NPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEK 121

Query: 145 IEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLAD 204
           I          V     D  D E   AA      K++  E+  +   ++  I  I  LA 
Sbjct: 122 ILQKFGVEVTFV-----DPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAK 176

Query: 205 QYNAITYIDEVHAVGI 220
            Y A+  +D   A  +
Sbjct: 177 AYGALVVVDNTFATPV 192


>gnl|CDD|35276 KOG0053, KOG0053, KOG0053, Cystathionine beta-lyases/cystathionine
           gamma-synthases [Amino acid transport and metabolism].
          Length = 409

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 2/120 (1%)

Query: 95  LEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCK 154
           LE  +A L G   AL+F+SG  A    +  L    D+I+   D +     I      +  
Sbjct: 82  LESGIAALEGAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFG 141

Query: 155 KVIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDE 214
               +  D++DL+K L A   +  K +  ES  +    +  I+++  LA +Y  +  +D 
Sbjct: 142 GEG-DFVDVDDLKKILKAIKENT-KAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDN 199


>gnl|CDD|144709 pfam01212, Beta_elim_lyase, Beta-eliminating lyase. 
          Length = 288

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 23/142 (16%)

Query: 89  NYYHVMLEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNH------A 142
                 LE  +A L GK+AAL   SG +AN   +   C + D +IC   +H +       
Sbjct: 33  TVNR--LEDRVAELFGKEAALFVPSGTMANQLALMAHCRRGDEVICGEPAHIYFDETGGH 90

Query: 143 SIIEGINKARCKKVIWNHN----DLEDLEKNLAATDLS----IPKIIIFESIYSMDGDIA 194
           + + G                  DLEDLE  +             I +  +  S  G + 
Sbjct: 91  AELGGAQPVPLP----GAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVV 146

Query: 195 P---IKEICDLADQYNAITYID 213
               ++EI  +A ++    ++D
Sbjct: 147 SLEELREIRAIAREHGIPLHLD 168


>gnl|CDD|144590 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent
           enzyme.  This family includes enzymes involved in
           cysteine and methionine metabolism. The following are
           members: Cystathionine gamma-lyase, Cystathionine
           gamma-synthase, Cystathionine beta-lyase, Methionine
           gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine
           sulfhydrylase All of these members participate is
           slightly different reactions. All these enzymes use PLP
           (pyridoxal-5'-phosphate) as a cofactor.
          Length = 381

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 12/124 (9%)

Query: 95  LEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSD----SHNHASIIEGINK 150
           LE+ +A L G +AAL F+SG  A +A +  L    D+++   D    ++    + E +  
Sbjct: 57  LEERIAALEGGEAALAFSSGMAAIFAALLALLKAGDHVVATDDLYGGTYR---LFEKVLP 113

Query: 151 ARCKKVIW-NHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAI 209
               +V + + +DL+ LE  +        K +  E+  +    +  I+ I  +A ++ A+
Sbjct: 114 RFGIEVTFVDPSDLDALEAAIK----PNTKAVFLETPTNPLLKVVDIEAIAKIAKKHGAL 169

Query: 210 TYID 213
             +D
Sbjct: 170 VVVD 173


>gnl|CDD|30866 COG0520, CsdB, Selenocysteine lyase [Amino acid transport and
           metabolism].
          Length = 405

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 55/307 (17%), Positives = 108/307 (35%), Gaps = 59/307 (19%)

Query: 130 DNIICFSDSHNHASIIEGINKARCK--KVIW------NHNDLEDLEKNLAATDLSIPKII 181
           D I+     H H++I+     A+    KV           DL+ LEK +        K++
Sbjct: 112 DEIVVSDLEH-HSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPK----TKLV 166

Query: 182 IFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVG---------------------I 220
               + ++ G + P+KEI +LA ++ A+  +D   A G                     +
Sbjct: 167 ALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWL 226

Query: 221 HGSCGAGI-SEREGIMNRITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSL 279
            G  G G+   R+ ++  +        + F   GG I           +       + + 
Sbjct: 227 LGPTGIGVLYVRKELLEEL--------EPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTP 278

Query: 280 PPAIASASVTSIQY--------IKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIP 331
             A A     ++ Y        I+ H  E  +YL         +E    P   +   I+ 
Sbjct: 279 NIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPP-DADRGGIVS 337

Query: 332 IMVGDSHKCTQISNILLKEFGIYIQ-----PINYPTVAKKKERLRVTLTPLHTDSDIEHL 386
             V   H    ++ +L ++ GI ++           +      +R +L   +T+ D++ L
Sbjct: 338 FNVKGIH-PHDVATLLDEK-GIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRL 395

Query: 387 VSSLENV 393
           + +L+  
Sbjct: 396 LEALKKA 402


>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
           belongs to pyridoxal phosphate (PLP)-dependent aspartate
           aminotransferase superfamily (fold I). Pyridoxal
           phosphate combines with an alpha-amino acid to form a
           compound called a Schiff base or aldimine intermediate,
           which depending on the reaction, is the substrate in
           four kinds of reactions (1) transamination (movement of
           amino groups), (2) racemization (redistribution of
           enantiomers), (3) decarboxylation (removing COOH
           groups), and (4) various side-chain reactions depending
           on the enzyme involved. Pyridoxal phosphate (PLP)
           dependent enzymes were previously classified into alpha,
           beta and gamma classes, based on the chemical
           characteristics (carbon atom involved) of the reaction
           they catalyzed. The availability of several structures
           allowed a comprehensive analysis of  the evolutionary
           classification of PLP dependent enzymes, and it was
           found that the functional classification did not always
           agree with the evolutionary history of these enzymes.
           The major groups in this CD corresponds to Aspartate
           aminotransferase a, b and c, Tyrosine, Alanine,
           Aromatic-amino-acid, Glutamine phenylpyruvate,
           1-Aminocyclopropane-1-carboxylate synthase,
           Histidinol-phosphate, gene products of malY and cobC,
           Valine-pyruvate aminotransferase and Rhizopine
           catabolism regulatory protein..
          Length = 350

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 50/340 (14%), Positives = 115/340 (33%), Gaps = 56/340 (16%)

Query: 88  TNYYHVM----LEKELATLHGKKAA--------LIFNSGYIANWATIGTLCSQIDNIICF 135
             YY       L + +A   G++          ++ N    A    +  L +  D ++  
Sbjct: 30  LGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVP 89

Query: 136 SDS-HNHASIIEGINKARCKKVIWN-HNDLEDLEKNLAATDLSIPKIIIFES-------I 186
             +   + +    +  A    V  +         + L A      K++   +       +
Sbjct: 90  DPTYPGYEAAAR-LAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAV 148

Query: 187 YSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITIISGTLA 246
            S +     ++E+ +LA ++  +   DE +A  ++               R  I+  + +
Sbjct: 149 LSEEE----LEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYER-VIVLRSFS 203

Query: 247 KGFGTFG---GYIAASENLC-DFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDE-R 301
           K FG  G   GY+ A      + ++          S     A+A+   +   ++H +E R
Sbjct: 204 KTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAA--LDDGEEHLEELR 261

Query: 302 KKYLERVKQLRHSLENKAIPCIPNESHIIP-----IMVG-----DSHKCTQISNILLKEF 351
           ++Y  R   L  +L+      +     + P     + +      D     +    LL E 
Sbjct: 262 ERYRRRRDALLEALKE-----LGPLVVVKPSGGFFLWLDLPEGDDEEFLER----LLLEA 312

Query: 352 GIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLE 391
           G+ ++P +      +   +R++      + ++E  +  L 
Sbjct: 313 GVVVRPGSAFGEGGEG-FVRLSFATP--EEELEEALERLA 349


>gnl|CDD|30350 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme
           metabolism].
          Length = 432

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 50/263 (19%), Positives = 97/263 (36%), Gaps = 38/263 (14%)

Query: 161 NDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKE----ICDLADQYNAITYIDEVH 216
           NDLE LE+        I  +I+ E +    G + P       + +L +++ A+   DEV 
Sbjct: 185 NDLEALEEAFEEYGDDIAAVIV-EPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVI 243

Query: 217 AVGIHGSCGAGISEREGIMNRITIISGTLAKGF--GTFGGYIAASENLCDFIRSFASGFI 274
             G   + G G     G+   +T +   +  G   G FGG     E L      + +G  
Sbjct: 244 T-GFRVALG-GAQGYYGVEPDLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAG-- 299

Query: 275 FSTSLPPAIASASVTSIQYIKQH---YDERKKYLERVKQ-LRHSLENKAIP-CIPNESHI 329
            + S  P   +A + +++ +      Y+      ER+ + LR + E   IP  +     +
Sbjct: 300 -TLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSM 358

Query: 330 IPIMVG--------DSHKC-TQISNILLKEF---GIYIQPINYPTVAKKKERLRVTLTPL 377
             I           D+ +   +            G+Y+ P  +             L+  
Sbjct: 359 FGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQFEAG---------FLSTA 409

Query: 378 HTDSDIEHLVSSLENVWQKMNRY 400
           HT+ DI+  + + +  ++++   
Sbjct: 410 HTEEDIDRTLEAADEAFKELAGE 432


>gnl|CDD|32191 COG2008, GLY1, Threonine aldolase [Amino acid transport and
           metabolism].
          Length = 342

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 44/223 (19%), Positives = 82/223 (36%), Gaps = 23/223 (10%)

Query: 59  GKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIAN 118
           G  P++ E                 ++ G +     LE+ +A L GK+AAL   SG  AN
Sbjct: 11  GPTPEMREALAAA-------NAVGDDVYGEDPTTNALEQRIAELFGKEAALFVPSGTQAN 63

Query: 119 WATIGTLCSQIDNIICFSDSHNH------ASIIEGINKARCKKVIWNHNDLEDLEKNLAA 172
              +   C   +++IC   +H +           G  K             ED+E  +  
Sbjct: 64  QLALAAHCQPGESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRP 123

Query: 173 TDL--SIPKIIIFESIYSMDGDIAP---IKEICDLADQYNAITYIDEVHAVGIHGSCGAG 227
            D+  +   + + E+  +  G + P   ++ I  +  ++    ++D   A   +     G
Sbjct: 124 DDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMD--GARLANALVALG 181

Query: 228 ISEREGIMNRITIISGTLAKGFGTFGGYIAASENLCDFIRSFA 270
           ++ +  I + +  +S  L KG G   G I       DF +   
Sbjct: 182 VALKT-IKSYVDSVSFCLTKGGGAPVGAIVFGNR--DFAKRAR 221


>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
           family belongs to pyridoxal phosphate (PLP)-dependent
           aspartate aminotransferase superfamily (fold I). The
           major groups in this CD correspond to ornithine
           aminotransferase, acetylornithine aminotransferase,
           alanine-glyoxylate aminotransferase, dialkylglycine
           decarboxylase, 4-aminobutyrate aminotransferase,
           beta-alanine-pyruvate aminotransferase,
           adenosylmethionine-8-amino-7-oxononanoate
           aminotransferase, and glutamate-1-semialdehyde
           2,1-aminomutase. All the enzymes belonging to this
           family act on basic amino acids and their derivatives
           are involved in transamination or decarboxylation..
          Length = 413

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 79/407 (19%), Positives = 127/407 (31%), Gaps = 101/407 (24%)

Query: 49  IWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYH--VMLEKELATLHGKK 106
           I   N  LG   HP+V+E  +    K       T    G  Y    V L + L  L  + 
Sbjct: 45  IGVLN--LGHN-HPEVVEALKEQLAK------LTHFSLGFFYNEPAVELAELLLALTPEG 95

Query: 107 AALIF--NSGYIAN-------WA-----------------TIGTL--CSQIDNIICFSDS 138
              +F  NSG  A         A                 T+G L           F   
Sbjct: 96  LDKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPL 155

Query: 139 HNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKI--IIFESIYSMDGDIAP- 195
                 +    + R        +DLE LE+ L        ++  +I E I    G I P 
Sbjct: 156 LPGVLHVPYPYRYRPPA--ELADDLEALEEALEEH---PEEVAAVIVEPIQGEGGVIVPP 210

Query: 196 ---IKEICDLADQYNAITYIDEVHA----VGIHGSCGAGISEREGIMNRITIISGTLAKG 248
              +K + +L  ++  +   DEV       G   +      E  G+   I     TL KG
Sbjct: 211 PGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAF-----EHFGVEPDIV----TLGKG 261

Query: 249 FGTFGGY----IAASENLCDFIRSFASGFIFST-SLPPAIASASVTSIQYIKQHYDERKK 303
            G  GG     +   E + D       G    T    P   +A++  ++ +     E + 
Sbjct: 262 LG--GGLPLGAVLGREEIMDAF-PAGPGLHGGTFGGNPLACAAALAVLEVL-----EEEG 313

Query: 304 YLERVKQLRHSLENKAIPCIPNESHIIPI-----MVG------------DSHKCTQISNI 346
            LE   +L   L  +          +  +     M+G            D     +I   
Sbjct: 314 LLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKA 373

Query: 347 LLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENV 393
            L+  G+ ++P     +     RL   L    T+ +I+  + +L+  
Sbjct: 374 ALER-GLLLRPSGGNVI-----RLLPPLI--ITEEEIDEGLDALDEA 412


>gnl|CDD|36582 KOG1368, KOG1368, KOG1368, Threonine aldolase [Amino acid transport
           and metabolism].
          Length = 384

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 65/313 (20%), Positives = 124/313 (39%), Gaps = 26/313 (8%)

Query: 95  LEKELATLHGKKAALIFNSGYIANWATIGTLCSQI-DNIICFSDSHNH------ASIIEG 147
           LE+ +A L GK+A L   SG + N   I   C Q    II    +H H       S + G
Sbjct: 61  LEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCHQRGSEIIVGDRAHIHRYEQGGISQLAG 120

Query: 148 INKARCKKVIWNHNDLEDLEKNLAATDLSI----PKIIIFESIYSMDGDIA-PIKE---I 199
           ++    K       DLED+E  +            K+I  E+ ++  G    P++E   +
Sbjct: 121 VHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRV 180

Query: 200 CDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITIISGTLAKGFGT-FGGYIAA 258
             LA ++    ++D         + G  + +     + ++I    L+KG G   G  I  
Sbjct: 181 KALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSI---CLSKGLGAPVGSVIVG 237

Query: 259 SENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENK 318
           S++  D  R F             +A+A++ ++           K  + + +  ++ E  
Sbjct: 238 SKDFIDKARHFRKALGGGMRQSGVLAAAALVALDENVPLLRADHKRAKELAEYINTPEEI 297

Query: 319 AIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLH 378
            +     E++I+ +++  +    +     L++ GI +       +     R+R+ L    
Sbjct: 298 RVEVPAVETNIVNMVLCQARLTAEELCKFLEKNGILL-------MGGASRRIRIVLHHQV 350

Query: 379 TDSDIEHLVSSLE 391
           TD D+E++ S L 
Sbjct: 351 TDEDVEYVKSVLS 363


>gnl|CDD|31301 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
           and related enzymes [Amino acid transport and
           metabolism].
          Length = 386

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 67/373 (17%), Positives = 126/373 (33%), Gaps = 107/373 (28%)

Query: 96  EKELATLHGKKAA-LIFNSGYI--ANWATIGTLCSQID-----NIICFSDSHNHASIIEG 147
            +++A L G     +IF SG     N A  G   +  +     +II  + +  H +++  
Sbjct: 50  REQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHII--TSAIEHPAVLNT 107

Query: 148 INKARCK--KVIW---NHN---DLEDLEKNLAATDLSIPKIIIFESIY--SMDGDIAPIK 197
                 +  +V +   + N   DLE LE+ L       P  I+   ++  +  G I PI 
Sbjct: 108 CRYLERQGFEVTYLPVDSNGLVDLEQLEEALR------PDTILVSIMHANNETGTIQPIA 161

Query: 198 EICDLADQYNAITYIDEVHAVG--------------------IHGSCGAG-ISEREGIMN 236
           EI ++  +   + ++D V AVG                      G  G G +  R G+  
Sbjct: 162 EIGEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYVRPGVRL 221

Query: 237 RITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQ 296
              I  G      G   G  + +EN+                  P I      + +   +
Sbjct: 222 EPLIHGG------GQERGLRSGTENV------------------PGIVGFG-KAAEIAVE 256

Query: 297 HYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNI---------- 346
             +E      R+++LR  LE+  +  IP+    + +   D  +   I N           
Sbjct: 257 ELEEE---NARLRKLRDRLEDGLLEIIPD----VYLNGDDEPRLPNILNFSFPGVEGESL 309

Query: 347 --LLKEFGIYI-------QPINYP---------TVAKKKERLRVTLTPLHTDSDIEHLVS 388
              L   GI +            P         +       +R +L    T+ +I+    
Sbjct: 310 LLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAE 369

Query: 389 SLENVWQKMNRYA 401
           +L+ + +++   +
Sbjct: 370 ALKEIIKRLRELS 382


>gnl|CDD|30509 COG0160, GabT, 4-aminobutyrate aminotransferase and related
           aminotransferases [Amino acid transport and metabolism].
          Length = 447

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 67/298 (22%), Positives = 99/298 (33%), Gaps = 69/298 (23%)

Query: 61  HPKVIENAQRTFEKCGIGAGGTRNIAGTNYYH----VMLEKELATL---HGKKAALIFNS 113
           HP+V+E  +R   K         N   T   +    V L ++L  L    G K     NS
Sbjct: 74  HPRVVEAVKRQLAKL--------NHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNS 125

Query: 114 GYIANWA------------------------TIGTL---CSQIDNIICFSDSHNHASIIE 146
           G  A  A                        T+G L    S+      F         + 
Sbjct: 126 GAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVP 185

Query: 147 GINKARCKKVIW---NHND-LEDLEKNLAATDLSIPKI--IIFESIYSMDGDIAP----I 196
             N  RC   I      +D LE +E+ L   ++   ++  II E I    G I P    +
Sbjct: 186 YPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFL 245

Query: 197 KEICDLADQYNAITYIDEVHA-VGIHGSCGAGISEREGIMNRITIISGTLAKGF--GTFG 253
           K +  L  ++  +   DEV    G  G   A   E  G+   I     TLAK    G   
Sbjct: 246 KALRKLCREHGILLIADEVQTGFGRTGKMFA--FEHFGVEPDIV----TLAKSLGGGLPL 299

Query: 254 GYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQL 311
             +     + D+      G  F  +  P   +A++  +  I     E +  LER  +L
Sbjct: 300 SAVVGRAEIMDWPPGGHGGT-FGGN--PVACAAALAVLDVI-----EEENLLERAAEL 349


>gnl|CDD|32700 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid
           transport and metabolism].
          Length = 426

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 12/124 (9%)

Query: 95  LEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIIC----FSDSHNHASIIEGINK 150
           LE+ +A L G  AAL   SG  A    I  L    DNI+     +  ++N   +     K
Sbjct: 67  LEERIAALEGGVAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYN---LFSHTLK 123

Query: 151 ARCKKVIW-NHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAI 209
               +V + + +D E+ E  +        K +  E+I +   D+  I+ I ++A ++   
Sbjct: 124 RLGIEVRFVDPDDPENFEAAIDENT----KAVFAETIGNPGLDVLDIEAIAEIAHRHGVP 179

Query: 210 TYID 213
             +D
Sbjct: 180 LIVD 183


>gnl|CDD|30785 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
           [Amino acid transport and metabolism].
          Length = 393

 Score = 37.6 bits (87), Expect = 0.005
 Identities = 61/312 (19%), Positives = 116/312 (37%), Gaps = 37/312 (11%)

Query: 109 LIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHN------- 161
           ++      A +     L +  D ++       + S    +  A  K V    +       
Sbjct: 93  IVTAGAKEALFLAFLALLNPGDEVLIPD--PGYPSYEAAVKLAGGKPVPVPLDEEENGFK 150

Query: 162 -DLEDLEKNLAATDLSIPKIIIFES-------IYSMDGDIAPIKEICDLADQYNAITYID 213
            DLEDLE  +        K II  S       +YS +     +K I +LA +++ I   D
Sbjct: 151 PDLEDLEAAITPK----TKAIILNSPNNPTGAVYSKEE----LKAIVELAREHDIIIISD 202

Query: 214 EV-HAVGIHGSCGAGISEREGIMNRITIISGTLAKGFGTFG---GYIAA-SENLCDFIRS 268
           E+   +   G+    I E  G  +R TI   + +K +G  G   G++    E L   +R 
Sbjct: 203 EIYEELVYDGAEHPSILELAGARDR-TITINSFSKTYGMTGWRIGWVVGPPEELIAALRK 261

Query: 269 FASGFIFSTSLPP-AIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKA-IPCI--P 324
             S        P    A A++   Q  +   + R++Y ER   L  +L     +  +  P
Sbjct: 262 LKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPP 321

Query: 325 NESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIE 384
             +  +   + +     + +  LL+E G+ + P +       +  +R++L    ++  +E
Sbjct: 322 EGAFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLA--TSEETLE 379

Query: 385 HLVSSLENVWQK 396
             +  L     +
Sbjct: 380 EALRRLARFLAE 391


>gnl|CDD|144011 pfam00266, Aminotran_5, Aminotransferase class-V.  This domain is
           found in amino transferases, and other enzymes including
           cysteine desulphurase EC:4.4.1.-.
          Length = 371

 Score = 36.8 bits (86), Expect = 0.010
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 162 DLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVG 219
           DL+ LEK L        K++    + ++ G + P++EI  LA +Y A+  +D   AVG
Sbjct: 128 DLDALEKLLTPR----TKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQAVG 181


>gnl|CDD|34597 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino
           acid transport and metabolism].
          Length = 404

 Score = 35.5 bits (82), Expect = 0.029
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 36/164 (21%)

Query: 161 NDLEDLEK----NLAATDLSIPKIIIFESIYSMDGDIAP----IKEICDLADQYNAITYI 212
           ND+E LE     + AA        +I E I    G I      +K + +L D++ A+  +
Sbjct: 172 NDIEALEAAIDEDTAA--------VIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLIL 223

Query: 213 DEVHAVGIHGSCGAGI-SEREGIMNRITIISGTLAKGFGTFGGY----IAASENLCDFIR 267
           DEV   G+ G  G     E  G+   I     TLAK  G  GG+    + A+E +     
Sbjct: 224 DEVQ-TGL-GRTGKLFAYEHYGVEPDIL----TLAKALG--GGFPIGAMLATEEIASAFT 275

Query: 268 SFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQL 311
               G  F  +  P   + ++  ++ + +     +  LE V++ 
Sbjct: 276 PGDHGSTFGGN--PLACAVALAVLEVLLE-----EGLLENVREK 312


>gnl|CDD|36762 KOG1549, KOG1549, KOG1549, Cysteine desulfurase NFS1 [Amino acid
           transport and metabolism].
          Length = 428

 Score = 35.3 bits (81), Expect = 0.031
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 159 NHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAV 218
             + L D+ K   A   S  +++    + +  G + P+KEI  +  +     ++D   AV
Sbjct: 164 EDSGLVDISKLREAIR-SKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAV 222

Query: 219 G 219
           G
Sbjct: 223 G 223


>gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA). This
           family belongs to pyridoxal phosphate (PLP)-dependent
           aspartate aminotransferase superfamily (fold I).  TA
           catalyzes the conversion of L-threonine or
           L-allo-threonine to glycine and acetaldehyde in a
           secondary glycine biosynthetic pathway..
          Length = 338

 Score = 33.5 bits (77), Expect = 0.10
 Identities = 32/142 (22%), Positives = 50/142 (35%), Gaps = 36/142 (25%)

Query: 95  LEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHN----------HASI 144
           LE   A L GK+AAL   SG  AN   +        ++IC   +H            + +
Sbjct: 37  LEARAAELFGKEAALFVPSGTAANQLALAAHTQPGGSVICHETAHIYTDEAGAPEFLSGV 96

Query: 145 ----IEGINKARCKKVIWNHNDLEDLEKNLAATDL---SIPKIIIFE------SIYSMDG 191
               + G N              EDLE  +   D      P ++  E      ++Y +D 
Sbjct: 97  KLLPVPGENGKL---------TPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLD- 146

Query: 192 DIAPIKEICDLADQYNAITYID 213
               +K I  LA +     ++D
Sbjct: 147 ---ELKAISALAKENGLPLHLD 165


>gnl|CDD|30424 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal
           aspartate aminotransferase [Amino acid transport and
           metabolism].
          Length = 383

 Score = 32.5 bits (74), Expect = 0.23
 Identities = 41/231 (17%), Positives = 76/231 (32%), Gaps = 43/231 (18%)

Query: 191 GDIAPIKEICDLADQYNAITYIDEVHAVGIH----GSCGAGISEREGIMNRITIISGTLA 246
           G + P+KEI   A ++ A+  +D V ++G         G  +            I+G+  
Sbjct: 145 GVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDV-----------AITGS-Q 192

Query: 247 KGFGTFGG--YIAASENLCDFIRSFAS-GFIFS----------------TSLPPAIASAS 287
           K  G   G  ++A SE   + I       F                   T     I +  
Sbjct: 193 KALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALR 252

Query: 288 VTSIQYIKQHYDER-KKYLERVKQLRHSLENKAIPCIPNESHIIPIMVG----DSHKCTQ 342
                 +++  + R  ++    + LR  LE   +    +     P +      +     +
Sbjct: 253 EALDLILEEGLEARIARHRRLAEALRAGLEALGLELFADPERRSPTVTAIKVPEGVDDKK 312

Query: 343 ISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENV 393
           +   LLKE+G+ I     P   K     R+         D+   +++LE  
Sbjct: 313 VRRALLKEYGVEIAGGQGPLKGKI---FRIGHMGNVRPEDVLAALAALEAA 360


>gnl|CDD|30510 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate
           aminotransferase [Coenzyme metabolism].
          Length = 449

 Score = 31.7 bits (72), Expect = 0.43
 Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 26/148 (17%)

Query: 196 IKEICDLADQYNAITYIDEVHAVGIHGSCGAGI-SEREGIMNRITIISGTLAKGFGTFGG 254
           +K + ++ D+Y  +   DEV A G  G  G     E  GI+  I      LAKG    GG
Sbjct: 238 LKRVREICDKYGILLIADEV-ATGF-GRTGKMFACEHAGIVPDIL----CLAKGLT--GG 289

Query: 255 YIAASENLC----------DFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKKY 304
           Y+  S  L               +F  G  +S +  P   +A++ ++  +     E +  
Sbjct: 290 YLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGN--PLACAAALANLDIL-----EEEDL 342

Query: 305 LERVKQLRHSLENKAIPCIPNESHIIPI 332
           LERV ++   L+      + +   +  +
Sbjct: 343 LERVAEIGAYLQAGLQAALADHPLVGDV 370


>gnl|CDD|30748 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme
           apparently involved in regulation of cell wall
           biogenesis [Cell envelope biogenesis, outer membrane].
          Length = 374

 Score = 31.4 bits (71), Expect = 0.48
 Identities = 61/345 (17%), Positives = 116/345 (33%), Gaps = 59/345 (17%)

Query: 95  LEKELATLHGKKAALIFNSGYIANWATIGTL-CSQIDNIIC--FSDSHNHASII-EGINK 150
            E+  A   G K A+  +SG  A    +  L     D +I   F+      +++  G   
Sbjct: 39  FEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKP 98

Query: 151 --ARCKKVIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNA 208
                     N  D + +E  +        K II   +    G    +  I  LA ++  
Sbjct: 99  VFVDIDPDTLNI-DPDLIEAAIT----PRTKAIIPVHLA---GQPCDMDAIMALAKRHGL 150

Query: 209 ITYIDEVHAVGIHGSCGAGISEREGIMNRITIISGTLAKGFGTF-GGYIAA-SENLCDFI 266
               D   A   HG+   G  ++ G    I   S    K   T  GG +    E L +  
Sbjct: 151 PVIEDAAQA---HGATYKG--KKVGSFGDIGAFSFHATKNLTTGEGGAVVTNDEELAEKA 205

Query: 267 RSFAS-GFI-------------FSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLR 312
           RS  + G               ++  L    A+  +  ++ + +  + R++  +   +  
Sbjct: 206 RSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIYAEAL 265

Query: 313 HSLENKAIPCIPNES----HIIPIMVGDSHKCTQISNILLKEFGI----YIQPINYPTVA 364
             L    +P  P+ +    H+  I+V +           LKE G+    Y +P++     
Sbjct: 266 KGLPGITLPPEPDGAVHAWHLYTILVDEEGISRDALMESLKEAGVGAVVYFRPLHLQPAY 325

Query: 365 KKKERLRVTLT-------------PLH---TDSDIEHLVSSLENV 393
           ++                      PLH   ++ D++ ++ +L+ V
Sbjct: 326 RQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEV 370


>gnl|CDD|30425 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
           proteins [Amino acid transport and metabolism].
          Length = 460

 Score = 30.0 bits (67), Expect = 1.3
 Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 6/87 (6%)

Query: 131 NIICFSDSH---NHASIIEGINKARCKKVIWNHN-DLEDLEKNLAATDLSIPKIIIFESI 186
           NI+C   +H     A+   G+   R   V  ++  D++ LE+  A  + +I  +++  + 
Sbjct: 159 NIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEE--AIDENTIGGVVVGTAG 216

Query: 187 YSMDGDIAPIKEICDLADQYNAITYID 213
            +  G I  I+E+ D+A++Y    ++D
Sbjct: 217 TTDTGSIDDIEELADIAEEYGIWLHVD 243


>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family
           belongs to the pyridoxal phosphate (PLP)-dependent
           aspartate aminotransferase superfamily (fold I). The
           major groups in this CD correspond to cysteine
           desulfurase (SufS) and selenocysteine lyase. SufS
           catalyzes the removal of elemental sulfur and selenium
           atoms from L-cysteine, L-cystine, L-selenocysteine, and
           L-selenocystine to produce L-alanine; and selenocysteine
           lyase catalyzes the decomposition of L-selenocysteine..
          Length = 373

 Score = 29.4 bits (67), Expect = 1.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 191 GDIAPIKEICDLADQYNAITYIDEVHAVG 219
           G I P+KEI ++A +      +D   + G
Sbjct: 153 GTINPVKEIGEIAHEAGVPVLVDGAQSAG 181


>gnl|CDD|30423 COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy
           production and conversion].
          Length = 293

 Score = 29.0 bits (65), Expect = 2.6
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 10/69 (14%)

Query: 79  AGGTRNIAGTNYYHVMLE----------KELATLHGKKAALIFNSGYIANWATIGTLCSQ 128
           A GT+ + G                   +E     G  A++IF     A  A +  + + 
Sbjct: 30  AYGTKIVGGVTPGKGGQTILGLPVFNTVEEAVKETGANASVIFVPPPFAADAILEAIDAG 89

Query: 129 IDNIICFSD 137
           I  ++  ++
Sbjct: 90  IKLVVIITE 98


>gnl|CDD|38730 KOG3521, KOG3521, KOG3521, Predicted guanine nucleotide exchange
           factor [Signal transduction mechanisms].
          Length = 846

 Score = 27.7 bits (61), Expect = 5.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 362 TVAKKKERLRVTLTPLHTDSDIEHL 386
            V KK +RL+V   PL  D  +   
Sbjct: 459 KVQKKADRLKVIRPPLLMDKLVCQY 483


>gnl|CDD|30813 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational
           modification, protein turnover, chaperones].
          Length = 596

 Score = 28.0 bits (62), Expect = 5.2
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 195 PIKEICDLADQYN----AITYIDEVHAVGIHG--SCGAGISEREGIMNRITI 240
               + DL +Q       I +IDE+ AVG       G G  ERE  +N++ +
Sbjct: 227 GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLV 278


>gnl|CDD|31968 COG1782, COG1782, Predicted metal-dependent RNase, consists of a
           metallo-beta-lactamase domain and an RNA-binding KH
           domain [General function prediction only].
          Length = 637

 Score = 27.9 bits (62), Expect = 5.4
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 281 PAIASASVTSI-QYIKQHYDERKKYLERV 308
           P I S ++ SI + ++    ER++ L  V
Sbjct: 138 PPIQSRTIKSIREILRSERKERREILRNV 166


>gnl|CDD|37678 KOG2467, KOG2467, KOG2467, Glycine/serine hydroxymethyltransferase
           [Amino acid transport and metabolism].
          Length = 477

 Score = 27.5 bits (61), Expect = 6.0
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 162 DLEDLEKNLAATDLSIPKIIIF-ESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGI 220
           D + LEK   AT    PK+II   S YS   D A  ++I    D+  A    D  H  G+
Sbjct: 177 DYDKLEKT--ATLFR-PKLIIAGTSAYSRLIDYARFRKIA---DKVGAYLMADMAHISGL 230


>gnl|CDD|99982 cd03811, GT1_WabH_like, This family is most closely related to the
           GT1 family of glycosyltransferases. WabH in Klebsiella
           pneumoniae has been shown to transfer a GlcNAc residue
           from UDP-GlcNAc onto the acceptor GalUA residue in the
           cellular outer core..
          Length = 353

 Score = 27.7 bits (62), Expect = 6.6
 Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 13/91 (14%)

Query: 128 QIDNIICFSDSHNH-ASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKIIIFESI 186
           + D +I    +  +  +++    +   K ++W HN L     +L         ++I +  
Sbjct: 81  KPDVVISHLTTTPNVLALL--AARLGTKLIVWEHNSL-----SLELKRKLRLLLLIRKLY 133

Query: 187 YSMDGDIAPIKEIC-DLADQYNA----ITYI 212
              D  +A  + +  DL          I  I
Sbjct: 134 RRADKIVAVSEGVKEDLLKLLGIPPDKIEVI 164


>gnl|CDD|145594 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists of
           zinc transport proteins and many putative metal
           transporters. The main contribution to this family is
           from the Arabidopsis thaliana ZIP protein family these
           proteins are responsible for zinc uptake in the plant.
           Also found within this family are C. elegans proteins of
           unknown function which are annotated as being similar to
           human growth arrest inducible gene product, although
           this protein in not found within this family.
          Length = 312

 Score = 27.3 bits (61), Expect = 7.8
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 10/56 (17%)

Query: 240 IISGTLAKGFGTFGGYI------AASENLCDFIRSFASGFIFSTS----LPPAIAS 285
           I +  +    G     +      + S  L  F+ +FA+G +  T+    LP A+ +
Sbjct: 8   IFAILITSLIGLLLPLLIPLISKSRSSKLLSFLLAFAAGVLLGTAFLHLLPEALEA 63


>gnl|CDD|40003 KOG4806, KOG4806, KOG4806, Uncharacterized conserved protein
           [Function unknown].
          Length = 454

 Score = 27.4 bits (60), Expect = 7.9
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 18  KRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSND 54
              R F  L  E+Y   +   N DE  +KV +  S +
Sbjct: 284 TYIRQFVVLPGERYLMRFEPSNDDEALQKVMVAASTE 320


>gnl|CDD|32165 COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid
           transport and metabolism].
          Length = 557

 Score = 27.2 bits (60), Expect = 8.6
 Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 26/137 (18%)

Query: 105 KKAALIFNSGY---------IANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKK 155
           + AA +F + +          AN A I  + +  D ++   D + H SI  G+  A    
Sbjct: 77  ELAARVFGADHTYFVVNGTSTANKAVINAVLTPGDKVLV--DRNCHKSIHHGLILAGATP 134

Query: 156 V-----------IWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLAD 204
           V           I     LE  ++ L A   +    +I    Y  DG    +++I +L  
Sbjct: 135 VYLEPSRNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTY--DGVCYNLRKIVELLH 192

Query: 205 QYNAITYIDEVHAVGIH 221
            Y A    DE H    H
Sbjct: 193 HYGAWVLYDEAH--PAH 207


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0714    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,012,249
Number of extensions: 268972
Number of successful extensions: 742
Number of sequences better than 10.0: 1
Number of HSP's gapped: 712
Number of HSP's successfully gapped: 55
Length of query: 401
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 305
Effective length of database: 4,189,273
Effective search space: 1277728265
Effective search space used: 1277728265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)