BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase
[Candidatus Liberibacter asiaticus str. psy62]
(401 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 401
Score = 835 bits (2157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/401 (100%), Positives = 401/401 (100%)
Query: 1 MDFEKFFKDQINYLHHEKRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSNDYLGMGK 60
MDFEKFFKDQINYLHHEKRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSNDYLGMGK
Sbjct: 1 MDFEKFFKDQINYLHHEKRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSNDYLGMGK 60
Query: 61 HPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWA 120
HPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWA
Sbjct: 61 HPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWA 120
Query: 121 TIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKI 180
TIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKI
Sbjct: 121 TIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKI 180
Query: 181 IIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITI 240
IIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITI
Sbjct: 181 IIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITI 240
Query: 241 ISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDE 300
ISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDE
Sbjct: 241 ISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDE 300
Query: 301 RKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINY 360
RKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINY
Sbjct: 301 RKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINY 360
Query: 361 PTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKMNRYA 401
PTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKMNRYA
Sbjct: 361 PTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKMNRYA 401
>gi|254780486|ref|YP_003064899.1| 8-amino-7-oxononanoate synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 381
Score = 161 bits (407), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/341 (32%), Positives = 178/341 (52%), Gaps = 20/341 (5%)
Query: 45 RKVTIW--CSNDYLGMGKHPKVIENAQRTFE-KCGIGAGGTRNIAGTNYYHVMLEKELAT 101
R+ IW S+DYL + + E + + K IG+GG+R + G H+ LE+E A
Sbjct: 27 RRQDIWDFTSHDYLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAAD 86
Query: 102 LHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHN 161
G + L F SGY AN A + TL D I+ D HASI EGIN + + + HN
Sbjct: 87 FFGFEKMLYFGSGYAANMAILSTLPQATDLIVY--DKLVHASIREGINSGKAQAIAIPHN 144
Query: 162 DLEDLEKNLAATDLSIPK---IIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAV 218
++ +N+ S K I+ ESIYSMDGD AP+ ++ +A+ Y+ +DE HA
Sbjct: 145 NINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKIANDYDGFIVVDEAHAT 204
Query: 219 GIHGSCGAG----ISEREGIMNRITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFI 274
G+ G G G I ER + I+ + +K G+ G + +++ + D++ ++A FI
Sbjct: 205 GVCGPLGKGLTHIIEERNNV-----IVMHSCSKALGSSGALVGSNKIIYDYLINYAKPFI 259
Query: 275 FSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMV 334
++TS P +A + +++ IK+ K L+ + + + NK I ++SHI I++
Sbjct: 260 YTTSPSPILAVVACEALKLIKRKPALHKSLLQLI-NITDKIANKKI-GFSSQSHIQSIVI 317
Query: 335 GDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLT 375
GD+ C I+ L K+ G I+ I PTV RLR+++T
Sbjct: 318 GDNKSCLNIAKNLQKK-GFDIRAIRPPTVPINTARLRISIT 357
>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 798
Score = 32.0 bits (71), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 26/174 (14%)
Query: 173 TDLSIPKIIIFESIYSMD-----------GDIAP-IKEICDLADQY-NAITYIDEVHAVG 219
D +P I++ I+S+D GD IK+I + Y NAI YIDE+H +
Sbjct: 250 VDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLV 309
Query: 220 IHGSCGAGISEREGIMNRITIISGTL-AKGFGTFGGYIAASENLCDFIRSFASGFIFSTS 278
GS +GIS + + + SG + G T+ Y E +R F + S
Sbjct: 310 GAGSA-SGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPS 368
Query: 279 LPPAIASASVTSIQ-YIKQHYDER--KKYLERVKQL--RH----SLENKAIPCI 323
+ AI V I+ Y ++H+ R K+ + QL RH L +KAI I
Sbjct: 369 IEDAI--EIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVI 420
>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
Length = 647
Score = 28.1 bits (61), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 209 ITYIDEVHAVGIHG--SCGAGISEREGIMNRITI 240
I ++DE+ AVG H G G ERE +N++ +
Sbjct: 243 IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLV 276
>gi|255764506|ref|YP_003065297.2| GTP cyclohydrolase I [Candidatus Liberibacter asiaticus str. psy62]
Length = 205
Score = 26.6 bits (57), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 352 GIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENV 393
G++ + PTV + KE +RV L + D D E L + + V
Sbjct: 7 GVFNMKLKKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRV 48
>gi|254781062|ref|YP_003065475.1| putative aminotransferase involved in iron-sulfur cluster
biogenesis [Candidatus Liberibacter asiaticus str.
psy62]
Length = 406
Score = 26.6 bits (57), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 179 KIIIFESIYSMDGDIAPIKEICDLADQYNAITYID 213
K+I + ++ G + PIKEIC +A + N +D
Sbjct: 166 KLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200
>gi|254780777|ref|YP_003065190.1| uridylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 242
Score = 24.6 bits (52), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 149 NKARCKKVIWNHNDLEDLEKNLAATDLSIPKI----IIFESIYSMDGDIAPIKEICDLAD 204
N C++ + + N A DL++ KI +I SI+ + ++C++
Sbjct: 67 NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIF--------MPQVCEVFS 118
Query: 205 QYNAITYIDEVHAVGIHGSCG 225
NA++Y+ + V G G
Sbjct: 119 CRNAVSYLSQGKVVIFSGGTG 139
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 273,471
Number of Sequences: 1233
Number of extensions: 11763
Number of successful extensions: 40
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 9
length of query: 401
length of database: 328,796
effective HSP length: 76
effective length of query: 325
effective length of database: 235,088
effective search space: 76403600
effective search space used: 76403600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)