HHsearch alignment for GI: 254780605 and conserved domain: COG5406

>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics].
Probab=99.31  E-value=5.1e-11  Score=96.74  Aligned_cols=229  Identities=17%  Similarity=0.168  Sum_probs=138.1

Q ss_pred             EECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCHHHHHHHHHHHHHHHHHCC---
Q ss_conf             7515432115666199999987999984438999999875332100------1245301889999999875433027---
Q gi|254780605|r  300 MVEGSDPSCLLRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSL------ETITEIDIIKKLERCREEIGCKMRN---  370 (609)
Q Consensus       300 ~i~~~~pI~~lRaiKn~~EI~~mr~Ahi~DgvAl~kfl~wL~~~~~------~~iTE~~ia~~Le~~R~~~~~~~~~---  370 (609)
T Consensus       157 ~~DvslgLsk~~~~KD~~E~an~~~ss----~~s~~~M~~~~~em~~~~D~~~kit~~KlsD~mes~iddv~f~q~~s~~  232 (1001)
T COG5406         157 ASDVSLGLSKMFLTKDAEEIANCRASS----AASSVLMRYFVKEMEMLWDGAFKITHGKLSDLMESLIDDVEFFQTKSLK  232 (1001)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCC
T ss_conf             323323266776006688875310232----3779999998877999874001212215788765200136666433754


Q ss_pred             ------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCEECCCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf             ------85555410000123354322224554332050389879983032010561222143210378888843336677
Q gi|254780605|r  371 ------PLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVL  444 (609)
Q Consensus       371 ------~~~~~SF~TIva~G~N~AipHY~~~~~s~~~i~~~~~~LiDsG~qY~~GtTDiTRT~~~G~~~~e~k~~yt~VL  444 (609)
T Consensus       233 l~~~~~d~lew~ytpiiqsg~~~D---l~psa~s~~~~l~gd~vl~s~GiRYn~YCSn~~RT~l~-dp~~e~~~Ny~fl~  308 (1001)
T COG5406         233 LGDIDLDQLEWCYTPIIQSGGSID---LTPSAFSFPMELTGDVVLLSIGIRYNGYCSNMSRTILT-DPDSEQQKNYEFLY  308 (1001)
T ss_pred             CCCCCHHHHHHHCCHHHCCCCEEE---CCCCCCCCCHHHCCCEEEEEEEEEECCCCCCCCCEEEE-CCCHHHHHHHHHHH
T ss_conf             244540344210350221586130---56202158544337457999513433500234415870-77367653589999


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEECCCE
Q ss_conf             888889972178978888999987366774186----5477643232113560778862377898600569878846860
Q gi|254780605|r  445 KGMISVSTARFPQRTRGCDLDSIARIFLWKYGA----DFAHGVGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSNEPGY  520 (609)
Q Consensus       445 k~~ial~~a~fp~g~~g~~lD~~aR~~l~~~g~----dy~HgtGHGVG~~l~VHE~P~~is~~~~~~l~~Gmv~s~EPG~  520 (609)
T Consensus       309 ~lQk~i~~~~r-pG~~~g~iY~~~~~yi~~~~pel~pnF~~nvG~~ig--iefR~s~~~~nvkn~r~lq~g~~fnis~gf  385 (1001)
T COG5406         309 MLQKYILGLVR-PGTDSGIIYSEAEKYISSNGPELGPNFIYNVGLMIG--IEFRSSQKPFNVKNGRVLQAGCIFNISLGF  385 (1001)
T ss_pred             HHHHHHHHHCC-CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC--CCCCCCCCCEECCCCCEECCCCEEEEEECC
T ss_conf             99999985207-998705689999999872398647407643201113--010014662542478431135079996135


Q ss_pred             E--E----CCCCCEEEEEEEEEEEC
Q ss_conf             3--5----68752150025999727
Q gi|254780605|r  521 Y--R----CGAFGIRIENVLCVSEP  539 (609)
Q Consensus       521 Y--~----~g~~GiRIEn~v~v~~~  539 (609)
T Consensus       386 ~nl~~~~~~Nnyal~l~dt~qi~ls  410 (1001)
T COG5406         386 GNLINPHPKNNYALLLIDTEQISLS  410 (1001)
T ss_pred             CCCCCCCCCCCHHHHHCCCEEEECC
T ss_conf             6557887665254441242586337