HHsearch alignment for GI: 254780605 and conserved domain: COG5406
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics].
Probab=99.31 E-value=5.1e-11 Score=96.74 Aligned_cols=229 Identities=17% Similarity=0.168 Sum_probs=138.1
Q ss_pred EECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCHHHHHHHHHHHHHHHHHCC---
Q ss_conf 7515432115666199999987999984438999999875332100------1245301889999999875433027---
Q gi|254780605|r 300 MVEGSDPSCLLRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSL------ETITEIDIIKKLERCREEIGCKMRN--- 370 (609)
Q Consensus 300 ~i~~~~pI~~lRaiKn~~EI~~mr~Ahi~DgvAl~kfl~wL~~~~~------~~iTE~~ia~~Le~~R~~~~~~~~~--- 370 (609)
T Consensus 157 ~~DvslgLsk~~~~KD~~E~an~~~ss----~~s~~~M~~~~~em~~~~D~~~kit~~KlsD~mes~iddv~f~q~~s~~ 232 (1001)
T COG5406 157 ASDVSLGLSKMFLTKDAEEIANCRASS----AASSVLMRYFVKEMEMLWDGAFKITHGKLSDLMESLIDDVEFFQTKSLK 232 (1001)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCC
T ss_conf 323323266776006688875310232----3779999998877999874001212215788765200136666433754
Q ss_pred ------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCEECCCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf ------85555410000123354322224554332050389879983032010561222143210378888843336677
Q gi|254780605|r 371 ------PLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVL 444 (609)
Q Consensus 371 ------~~~~~SF~TIva~G~N~AipHY~~~~~s~~~i~~~~~~LiDsG~qY~~GtTDiTRT~~~G~~~~e~k~~yt~VL 444 (609)
T Consensus 233 l~~~~~d~lew~ytpiiqsg~~~D---l~psa~s~~~~l~gd~vl~s~GiRYn~YCSn~~RT~l~-dp~~e~~~Ny~fl~ 308 (1001)
T COG5406 233 LGDIDLDQLEWCYTPIIQSGGSID---LTPSAFSFPMELTGDVVLLSIGIRYNGYCSNMSRTILT-DPDSEQQKNYEFLY 308 (1001)
T ss_pred CCCCCHHHHHHHCCHHHCCCCEEE---CCCCCCCCCHHHCCCEEEEEEEEEECCCCCCCCCEEEE-CCCHHHHHHHHHHH
T ss_conf 244540344210350221586130---56202158544337457999513433500234415870-77367653589999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEECCCE
Q ss_conf 888889972178978888999987366774186----5477643232113560778862377898600569878846860
Q gi|254780605|r 445 KGMISVSTARFPQRTRGCDLDSIARIFLWKYGA----DFAHGVGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSNEPGY 520 (609)
Q Consensus 445 k~~ial~~a~fp~g~~g~~lD~~aR~~l~~~g~----dy~HgtGHGVG~~l~VHE~P~~is~~~~~~l~~Gmv~s~EPG~ 520 (609)
T Consensus 309 ~lQk~i~~~~r-pG~~~g~iY~~~~~yi~~~~pel~pnF~~nvG~~ig--iefR~s~~~~nvkn~r~lq~g~~fnis~gf 385 (1001)
T COG5406 309 MLQKYILGLVR-PGTDSGIIYSEAEKYISSNGPELGPNFIYNVGLMIG--IEFRSSQKPFNVKNGRVLQAGCIFNISLGF 385 (1001)
T ss_pred HHHHHHHHHCC-CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC--CCCCCCCCCEECCCCCEECCCCEEEEEECC
T ss_conf 99999985207-998705689999999872398647407643201113--010014662542478431135079996135
Q ss_pred E--E----CCCCCEEEEEEEEEEEC
Q ss_conf 3--5----68752150025999727
Q gi|254780605|r 521 Y--R----CGAFGIRIENVLCVSEP 539 (609)
Q Consensus 521 Y--~----~g~~GiRIEn~v~v~~~ 539 (609)
T Consensus 386 ~nl~~~~~~Nnyal~l~dt~qi~ls 410 (1001)
T COG5406 386 GNLINPHPKNNYALLLIDTEQISLS 410 (1001)
T ss_pred CCCCCCCCCCCHHHHHCCCEEEECC
T ss_conf 6557887665254441242586337