HHsearch alignment for GI: 254780605 and conserved domain: TIGR00495

>TIGR00495 crvDNA_42K DNA-binding protein, 42 kDa; InterPro: IPR004545 Proteins of this family have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. The proteins are closely related to methionine aminopeptidase, a cobalt-binding protein. This group sequences are classified as non-peptidase homologues in MEROPS peptidase family M24 (clan MG). .
Probab=95.42  E-value=0.034  Score=35.29  Aligned_cols=100  Identities=15%  Similarity=0.216  Sum_probs=66.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----EEECCCCEEEEECCCCEECCCCCCEEEEEECCCCHHHHH--HHHH
Q ss_conf             2785555410000123354322224554332----050389879983032010561222143210378888843--3366
Q gi|254780605|r  369 RNPLRDIAFNTIAASGPHAAIIHYQATVQSN----RLLQKDELLLLDSGAQYVNGTTDITRTIAIGDVDYEKKY--YFTL  442 (609)
Q Consensus       369 ~~~~~~~SF~TIva~G~N~AipHY~~~~~s~----~~i~~~~~~LiDsG~qY~~GtTDiTRT~~~G~~~~e~k~--~yt~  442 (609)
T Consensus        73 K~~~kGiAFPT~vS--vNn~vgHfSPLkSd~eand~~Lk~GD~VKIdLG~HiDGFiA~vAhT~vig~~~~~~~tG~~ADv  150 (407)
T TIGR00495        73 KELEKGIAFPTCVS--VNNCVGHFSPLKSDEEANDLVLKEGDVVKIDLGCHIDGFIALVAHTIVIGVASEEPVTGRKADV  150 (407)
T ss_pred             CCCCCCCCCCCCCC--CCCCHHHCCCCCCCCCHHHHHHHCCCEEEEECCCCEEEEEECCEEEEEEEECCCCCCCCHHHHH
T ss_conf             00115732476417--0360332688788831334453338747981366440356415078998514587655706789


Q ss_pred             HHHHHHHHHHHC--CCCCCCHHHH----HHHHHH
Q ss_conf             778888899721--7897888899----998736
Q gi|254780605|r  443 VLKGMISVSTAR--FPQRTRGCDL----DSIARI  470 (609)
Q Consensus       443 VLk~~ial~~a~--fp~g~~g~~l----D~~aR~  470 (609)
T Consensus       151 I~AA~~Al~aAlRlvkPG~~n~~VT~~~~KvA~~  184 (407)
T TIGR00495       151 IAAAHLALEAALRLVKPGKTNTQVTEAIEKVADS  184 (407)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             9999999998874048879871478899999732