HHsearch alignment for GI: 254780605 and conserved domain: TIGR00495
>TIGR00495 crvDNA_42K DNA-binding protein, 42 kDa; InterPro: IPR004545 Proteins of this family have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. The proteins are closely related to methionine aminopeptidase, a cobalt-binding protein. This group sequences are classified as non-peptidase homologues in MEROPS peptidase family M24 (clan MG). .
Probab=95.42 E-value=0.034 Score=35.29 Aligned_cols=100 Identities=15% Similarity=0.216 Sum_probs=66.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----EEECCCCEEEEECCCCEECCCCCCEEEEEECCCCHHHHH--HHHH
Q ss_conf 2785555410000123354322224554332----050389879983032010561222143210378888843--3366
Q gi|254780605|r 369 RNPLRDIAFNTIAASGPHAAIIHYQATVQSN----RLLQKDELLLLDSGAQYVNGTTDITRTIAIGDVDYEKKY--YFTL 442 (609)
Q Consensus 369 ~~~~~~~SF~TIva~G~N~AipHY~~~~~s~----~~i~~~~~~LiDsG~qY~~GtTDiTRT~~~G~~~~e~k~--~yt~ 442 (609)
T Consensus 73 K~~~kGiAFPT~vS--vNn~vgHfSPLkSd~eand~~Lk~GD~VKIdLG~HiDGFiA~vAhT~vig~~~~~~~tG~~ADv 150 (407)
T TIGR00495 73 KELEKGIAFPTCVS--VNNCVGHFSPLKSDEEANDLVLKEGDVVKIDLGCHIDGFIALVAHTIVIGVASEEPVTGRKADV 150 (407)
T ss_pred CCCCCCCCCCCCCC--CCCCHHHCCCCCCCCCHHHHHHHCCCEEEEECCCCEEEEEECCEEEEEEEECCCCCCCCHHHHH
T ss_conf 00115732476417--0360332688788831334453338747981366440356415078998514587655706789
Q ss_pred HHHHHHHHHHHC--CCCCCCHHHH----HHHHHH
Q ss_conf 778888899721--7897888899----998736
Q gi|254780605|r 443 VLKGMISVSTAR--FPQRTRGCDL----DSIARI 470 (609)
Q Consensus 443 VLk~~ial~~a~--fp~g~~g~~l----D~~aR~ 470 (609)
T Consensus 151 I~AA~~Al~aAlRlvkPG~~n~~VT~~~~KvA~~ 184 (407)
T TIGR00495 151 IAAAHLALEAALRLVKPGKTNTQVTEAIEKVADS 184 (407)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 9999999998874048879871478899999732