RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780605|ref|YP_003065018.1| putative aminopeptidase [Candidatus Liberibacter asiaticus str. psy62] (609 letters) >3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing, cytoplasm, hydrolase, manganese, metal-binding, metalloprotease, protease; HET: P6G; 1.60A {Homo sapiens} Length = 623 Score = 544 bits (1402), Expect = e-155 Identities = 216/625 (34%), Positives = 313/625 (50%), Gaps = 32/625 (5%) Query: 10 SPSKTFERVHNLRS-----CFDSLGMDAFLVPRVDEYRGEFVDKGSERLAWLSGFTGSAG 64 P T E + LR + + + A+++P D ++ E++ R A++SGF GSAG Sbjct: 2 PPKVTSELLRQLRQAMRNSEYVTEPIQAYIIPSGDAHQSEYIAPCDCRRAFVSGFDGSAG 61 Query: 65 IAIVLRQKSVIFVDGRYTLQVEKEVDTALFTIKNIAIE--PLHAWISEHGFVGLRLGLDS 122 AI+ + + ++ DGRY LQ K++D+ +K + W+ G R+G+D Sbjct: 62 TAIITEEHAAMWTDGRYFLQAAKQMDSNWTLMKMGLKDTPTQEDWLVSVLPEGSRVGVDP 121 Query: 123 RLHSSFEVDLLQKSLDKIEGVIVDVPYNPIDSLWKDRPQRLYRKVAMQDMAYAGRESQEK 182 + + + K L ++ V N +D +W DRP+R + + + Y G ++K Sbjct: 122 LIIPTDYWKKMAKVLRSAGHHLIPVKENLVDKIWTDRPERPCKPLLTLGLDYTGISWKDK 181 Query: 183 IRDICKILHQKEVGAVFICDPSSIAWIFNIRGFDIPCSPYPLSRAILYADGKAEIFFDKQ 242 + D+ + ++ V + IAW+FN+RG D+ +P S AI+ + +F D Sbjct: 182 VADLRLKMAERNVMWFVVTALDEIAWLFNLRGSDVEHNPVFFSYAIIGLET-IMLFIDGD 240 Query: 243 YIN-EQLKALLSAVAIVL--------DMDMMDSRLVCLARTSMP--ILIDPKWISYRFFK 291 I+ +K L + + S L L P + SY + Sbjct: 241 RIDAPSVKEHLLLDLGLEAEYRIQVHPYKSILSELKALCADLSPREKVWVSDKASYAVSE 300 Query: 292 VIAQKNGVMVEGSDPSCLLRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSL-ETITE 350 I K+ P C+ +A KN E EGM+ AHI+D VA+ W + +TE Sbjct: 301 TI-PKDHRCCMPYTPICIAKAVKNSAESEGMRRAHIKDAVALCELFNWLEKEVPKGGVTE 359 Query: 351 IDIIKKLERCREEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLL 410 I K E R + D++F TI+++GP AIIHY ++NR L DE+ L+ Sbjct: 360 ISAADKAEEFRRQQAD-----FVDLSFPTISSTGPTGAIIHYAPVPETNRTLSLDEVYLI 414 Query: 411 DSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARI 470 DSGAQY +GTTD+TRT+ +K FT VLKG I+VS A FP T+G LDS AR Sbjct: 415 DSGAQYKDGTTDVTRTMHFETPTAYEKECFTYVLKGHIAVSAAVFPTGTKGHLLDSFARS 474 Query: 471 FLWKYGADFAHGVGHGVGSFLPVHEGPQGISRT--NQEPLLPGMILSNEPGYYRCGAFGI 528 LW G D+ HG GHGVGSFL VHEGP GIS + EPL GMI+++EPGYY GAFGI Sbjct: 475 ALWDSGLDYLHGTGHGVGSFLNVHEGPCGISYKTFSDEPLEAGMIVTDEPGYYEDGAFGI 534 Query: 529 RIENVLCVSEPET-INNGECLMLGFNTLTLCPIDRKLILVELLTNEEKKWCNDYHRRVYT 587 RIENV+ V +T N L LTL PI K+I V+ LT++E W N+YH Sbjct: 535 RIENVVLVVPVKTKYNFNNRGSLTLEPLTLVPIQTKMIDVDSLTDKECDWLNNYHLTCRD 594 Query: 588 SLAPLIEDQ---EVLSWLFSVTAPI 609 + ++ Q E L WL T PI Sbjct: 595 VIGKELQKQGRQEALEWLIRETQPI 619 >3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone binding module, histone H3/H4 chaperone, PITA-bread fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A Length = 444 Score = 155 bits (393), Expect = 3e-38 Identities = 38/301 (12%), Positives = 93/301 (30%), Gaps = 46/301 (15%) Query: 300 MVEGSDPSCLLRATKNKVEIEGMQTA-HIQDGVAMVYFLFWF--YSQSLETITEIDIIKK 356 +V+ S A K++ E+ ++ A + V YF+ Y + IT + Sbjct: 164 LVDASLGLAKCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQ 223 Query: 357 LERCREEIGCKMRNPLR---------DIAFNTIAASGPHAAIIHYQATVQSNRLLQKDEL 407 +E + L+ + + I SG + ++ ++ Sbjct: 224 MESLIDNEAFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPS---AITDDRNLHGDV 280 Query: 408 LLLDSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSI 467 +L G +Y + +++ RT E++ ++ ++ + D+ + Sbjct: 281 VLCSLGFRYKSYCSNVGRTYLFDPDS-EQQKNYSFLVALQKKLFEYCRD-GAVIGDIYTK 338 Query: 468 ARIFLWK----YGADFAHGVGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSNEPG---- 519 + +F +G G+G + E ++ N L GM L+ G Sbjct: 339 ILGLIRAKRPDLEPNFVRNLGAGIG--IEFRESSLLVNAKNPRVLQAGMTLNLSIGFGNL 396 Query: 520 ------YYRCGAFGIRIENVLCVSEPETINNGECLMLGFNTLTLCPIDRKLILVELLTNE 573 + + + + + + ++ T P + + E Sbjct: 397 INPHPKNSQSKEYALLLIDTIQITRS-----------DPIVFTDSP--KAQGDISYFFGE 443 Query: 574 E 574 + Sbjct: 444 D 444 >3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, activator, chromosomal protein, coiled coil, DNA damage; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A* Length = 467 Score = 145 bits (367), Expect = 2e-35 Identities = 62/476 (13%), Positives = 138/476 (28%), Gaps = 76/476 (15%) Query: 151 PID-SLWKDRPQRLYRKVAMQDMAYAGRESQEKIRDICKILHQKEVGAVFICDPSSIAWI 209 ID ++K R + LY K E + + +L + W+ Sbjct: 7 NIDFDVFKKRIELLYSKY---------NEFEGSPNSLLFVLGSSNAENPYQKTTILHNWL 57 Query: 210 FNIRGFDIPCSPYPLSR---AILYADGKAEIFFDKQYINEQLKALLS----------AVA 256 ++ P + L I+ + KA+ + + ++ ++ Sbjct: 58 L---SYEFPATLIALVPGKVIIITSSAKAKHLQKAIDLFKDPESKITLELWQRNNKEPEL 114 Query: 257 IVLDMDMMDSRLVCLARTSMPILIDPKWIS-----YRFFKVIAQKNGV-MVEGSDPSCLL 310 D + + + +T D ++ ++N +++ S + Sbjct: 115 NKKLFDDVIALINSAGKTVGIPEKDSYQGKFMTEWNPVWEAAVKENEFNVIDISLGLSKV 174 Query: 311 RATKNKVEIEGMQTAHIQDGVAMVYFLFWFYS--QSLETITEIDIIKKLERCREE----- 363 K+ E + + M IT + K+E ++ Sbjct: 175 WEVKDVNEQAFLSVSSKGSDKFMDLLSNEMVRAVDEELKITNAKLSDKIENKIDDVKFLK 234 Query: 364 -----------IGCKMRNPLRDIAFNTIAASGPHAAI-IHYQATVQSNRLLQKDELLLLD 411 K L D ++ I SG + + ++T N L + +L Sbjct: 235 QLSPDLSALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARST---NDQLYGNGCILAS 291 Query: 412 SGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIF 471 G +Y N ++ITRT I D E + +L + T ++ + Sbjct: 292 CGIRYNNYCSNITRTFLI-DPSEEMANNYDFLLTLQKEIVTNILKPGRTPKEVYESVIEY 350 Query: 472 LWK----YGADFAHGVGHGVGSFLPVHEGPQGI-SRTNQEPLLPGMILSNEPGYY----- 521 + K +F +G +G L + + + + + G + G+ Sbjct: 351 IEKTKPELVPNFTKNIGSLIG--LEFRDSNFILNVKNDYRKIQRGDCFNISFGFNNLKDS 408 Query: 522 -RCGAFGIRIENVLCVSEPETINNGECLMLGFNTLTLCPIDRKLILVELLTNEEKK 576 + +++ + + + + E LT + I EE Sbjct: 409 QSANNYALQLADTVQIPL----DETEP----PRFLTNYTKAKSQISFYFNNEEEDN 456 Score = 30.6 bits (68), Expect = 0.92 Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 8/93 (8%) Query: 15 FERVHNLRSCFD--SLGMDAFLV---PRVDEYRGEFVDKGSERLAWLSGFTGSAGIAIVL 69 +R+ L S ++ ++ L E + K + WL + A + ++ Sbjct: 14 KKRIELLYSKYNEFEGSPNSLLFVLGSSNAENPYQ---KTTILHNWLLSYEFPATLIALV 70 Query: 70 RQKSVIFVDGRYTLQVEKEVDTALFTIKNIAIE 102 K +I ++K +D I +E Sbjct: 71 PGKVIIITSSAKAKHLQKAIDLFKDPESKITLE 103 >3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, structural genomics, center for structural genomics of infectious diseases; HET: SO4; 2.89A {Bacillus anthracis} Length = 427 Score = 142 bits (359), Expect = 2e-34 Identities = 60/240 (25%), Positives = 99/240 (41%), Gaps = 27/240 (11%) Query: 310 LRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERCREEIGCKMR 369 LR K EIE ++ A + L + E ++ + + + G K Sbjct: 168 LRVFKTDEEIEIIKEAIAVTKDGIYNVLKHAK----ADMMEYELEAQFDFTLKSSGIKH- 222 Query: 370 NPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTI-A 428 AFNTI ASG +A ++HY+ ++ +Q +L+LLD GAQ DI+ T A Sbjct: 223 -----HAFNTILASGKNATVLHYED---NDAQIQNGDLVLLDLGAQKDYYNADISYTFPA 274 Query: 429 IGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWKYG---------ADF 479 G +K + +VL + + P + L+ A+ L + + Sbjct: 275 NGTFSSRQKQIYNIVLNALKETTEIIKP-GLKFAALNEHAKKVLAEGCKAVGLIQEDEEL 333 Query: 480 AHGVGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSNEPGYYRCG-AFGIRIENVLCVSE 538 + HGV FL + L GM+++ EPG Y + GIRIE+ + V++ Sbjct: 334 SKYYYHGVSHFL--GLDTHDVGTYKDRVLEEGMVITIEPGLYIEEESIGIRIEDDILVTK 391 >1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich; 2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1 Length = 402 Score = 142 bits (358), Expect = 2e-34 Identities = 55/405 (13%), Positives = 122/405 (30%), Gaps = 40/405 (9%) Query: 178 ESQEKIRDICKILHQKEVGAVFICDPSSIAWIFNIRGFDIPCSPYPLSRAILYADGKAEI 237 E + + + + ++ AV +I + G+ + A + + KA Sbjct: 23 EMTRRZBRLRAWMAKSBIDAVLFTSYHNINYY---SGWLY--CYFGRKYAZVIBZVKAVT 77 Query: 238 FFDKQYINEQLKALLSAVAIVLD--MDMMDSRLVCLARTSMPILIDPKWISYRFFKVIAQ 295 + + D D S + L + + I I+ ++ + + + Sbjct: 78 ISKGIDGGMPWRRSFGBNIVYTDWKRDNFYSAVKKLVKGAKZIGIEHDHVTLBHRRZLZK 137 Query: 296 K--NGVMVEGSDPSCLLRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSLETITEIDI 353 V+ +P R K+ E + ++ + + E ++ Sbjct: 138 ALPGTEFVDVGZPVMWZRVIKSSEEZBLIRZGARISDIGGAATAAAIS----AGVPEYEV 193 Query: 354 IKKLERCREEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSG 413 + + + SG + H T BR++Z+ ++L L+ Sbjct: 194 AIATTBAMVRZIARBFPYVELMDTWIWFQSGINTDGAHNPVT---BRVVZRGDILSLNCF 250 Query: 414 AQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLW 473 T + RT+ + +VB + P R D+ S Sbjct: 251 PMIFGYYTALERTLFLZZVBDASLZIWZKNTAVHRRGLZLIKPG-ARCKDIASELNBMYR 309 Query: 474 K--YGADFAHGVGHGVGSFLPVHEGPQG----ISRTNQEPLLPGMILSNEPGYYRC---- 523 + G GH G + H + + Z L PGM++S EP Sbjct: 310 ZWDLLRYRTFGYGHSFG--VLBHYYGREAGVELREDIZTVLEPGMVVSMEPMVMBPEGEP 367 Query: 524 GAFGIRIENVLCVSEPETINNGECLMLGFNTLTLCPIDRKLILVE 568 GA G R ++L + E +T P + +++ Sbjct: 368 GAGGYREHDILVIKEN-----------BTENITGFPFGPEHNIIK 401 >1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken structural genomics/proteomics initiative, RSGI, hydrolase; 1.70A {Pyrococcus horikoshii OT3} PDB: 1pv9_A Length = 351 Score = 124 bits (312), Expect = 4e-29 Identities = 85/388 (21%), Positives = 160/388 (41%), Gaps = 43/388 (11%) Query: 180 QEKIRDICKILHQKEVGAVFICDPSSIAWIFNIRGFDIPCSPYPLSRAILYADGKAEIFF 239 EK++ I + + + + AV I ++ +I SP ++ + ++ Sbjct: 5 NEKVKKIIEFMDKNSIDAVLIAKNPNVYYISG-------ASPLAGGYILITGESAT-LYV 56 Query: 240 DKQYINEQLKALLSAVAIVLDMDMMDSRLVCLARTSMPILIDPKWISYRFFKVIAQKNGV 299 + + V MD L + + + +I K ++ Sbjct: 57 PELEYEMAKEESNIPVEKFKKMDEFYKALEGIKSLGIESSLPYGFIEELKKKANIKEFKK 116 Query: 300 MVEGSDPSCLLRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSLETITEIDIIKKLER 359 + + ++++ K IE + +A + + + E Sbjct: 117 VDDVIRDMRIIKSEKEIKIIEKACEIADKAVMAAIEEITEGKKER-------------EV 163 Query: 360 CREEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNG 419 + N AF+TI ASG +A+ H S++ +++ +L+++D GA Y + Sbjct: 164 AAKVEYLMKMNGAEKPAFDTIIASGYRSALPHGV---ASDKRIERGDLVVIDLGALYQHY 220 Query: 420 TTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWK--YGA 477 +DITRTI +G + ++K + +VL+ + P +LDSIAR + + YG Sbjct: 221 NSDITRTIVVGSPNEKQKEIYEIVLEAQKKAVESAKPG-ITAKELDSIARNIIAEYGYGE 279 Query: 478 DFAHGVGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSNEPGYYRCGAFGIRIENVLCVS 537 F H +GHGVG L VHE P+ +S+ ++ L GM+++ EPG Y G+RIE+ + ++ Sbjct: 280 YFNHSLGHGVG--LEVHEWPR-VSQYDETVLREGMVITIEPGIYIPKIGGVRIEDTILIT 336 Query: 538 EPETINNGECLMLGFNTLTLCPIDRKLI 565 + G LT R+LI Sbjct: 337 KN-----------GSKRLTKTE--RELI 351 Score = 35.4 bits (80), Expect = 0.039 Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 13/76 (17%) Query: 16 ERVHNLRSCFDSLGMDAFLVPRVDEYRGEFVDKGSERLAWLSGFTG-SAGIAIVLRQKSV 74 E+V + D +DA L+ + + ++SG + + G ++ + + Sbjct: 6 EKVKKIIEFMDKNSIDAVLIAKNPN------------VYYISGASPLAGGYILITGESAT 53 Query: 75 IFVDGRYTLQVEKEVD 90 ++V ++E + Sbjct: 54 LYVPELEYEMAKEESN 69 >2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima} Length = 359 Score = 117 bits (294), Expect = 5e-27 Identities = 93/391 (23%), Positives = 150/391 (38%), Gaps = 37/391 (9%) Query: 181 EKIRDICKILHQKEVGAVFICDPSSIAWI--FNIRGFDIPCSPYPLSRAILYADGKAEIF 238 ++ + +++ ++ + A I + + A GF S IL ++ + Sbjct: 2 DRSERLIQLISEEGIDAFLIMNIENSARASSVYFSGFTGSFS------IILISENTRLLI 55 Query: 239 FDKQYINEQLKALLSAVAIVLDMDMMDSRLVCLARTSMPILIDPKWISYRFFKVIAQKNG 298 D +Y Q K + L I + + Sbjct: 56 TDSRYT-VQAKQETDFEVREVKGGDFIDVLKKTVNDLKIKTIALEEERVSLSLFRRISSA 114 Query: 299 VMVEGSDPSCLLRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSLETITEIDIIKKLE 358 V+ EG Q Q +TE +I LE Sbjct: 115 FGDRKFIGIDDEVKQMRMVKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALLE 174 Query: 359 RCREEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVN 418 + G + F+TI ASG +A+ H +A+ ++++++ +++++D GA Y N Sbjct: 175 YTMRKEGAEGVA------FDTIVASGCRSALPHGKAS---DKVVERGDVIVIDFGATYEN 225 Query: 419 GTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWK--YG 476 DITR ++IG+ E K ++VL+ G LDS+AR F+ + YG Sbjct: 226 YCADITRVVSIGEPSDEVKEVHSIVLEAQERA-LKIAKAGVTGKLLDSVAREFIREKGYG 284 Query: 477 ADFAHGVGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSNEPGYYRCGAFGIRIENVLCV 536 F H +GHG+G L VHEGP IS N PL ++ + EPG Y G FGIRIE + + Sbjct: 285 EFFGHSLGHGIG--LEVHEGPA-ISFRNDSPLPENVVFTVEPGIYLEGKFGIRIEEDVVL 341 Query: 537 SEPETINNGECLMLGFNTLTLCPIDRKLILV 567 E G LT P R + +V Sbjct: 342 KEQ-----------GCEILTTLP--RSIFVV 359 Score = 45.1 bits (105), Expect = 4e-05 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 7/96 (7%) Query: 16 ERVHNLRSCFDSLGMDAFLVPRVDEYRGEFVDKGSERLAWLSGFTGSAGIAIVLRQKSVI 75 +R L G+DAFL+ ++ + SGFTGS I ++ ++ Sbjct: 2 DRSERLIQLISEEGIDAFLIMNIENSARA-------SSVYFSGFTGSFSIILISENTRLL 54 Query: 76 FVDGRYTLQVEKEVDTALFTIKNIAIEPLHAWISEH 111 D RYT+Q ++E D + +K + Sbjct: 55 ITDSRYTVQAKQETDFEVREVKGGDFIDVLKKTVND 90 >1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; 2.25A {Pyrococcus horikoshii OT3} PDB: 2how_A Length = 356 Score = 115 bits (288), Expect = 2e-26 Identities = 85/371 (22%), Positives = 141/371 (38%), Gaps = 30/371 (8%) Query: 182 KIRDICKILHQKEVGAVFICDPSSIAWIFNIRGFDIPCSPYPLSRAILYADGKAEIFFDK 241 ++ +L ++ I +++ ++ +R ++ L + A+G F Sbjct: 2 RLEKFIHLLGERGFDGALISPGTNLYYLTGLRLHEVGERLAIL---AVSAEGDY-RFLAP 57 Query: 242 QYINEQLKALLSAVAIVLDMDMMD--SRLVCLARTSMPILIDPKWISYRFFKVIAQKNGV 299 + + + L L + ILI+ + ++ Sbjct: 58 SLYENVVNNFPATFWHDGENPYAKLREILEELGISKGRILIEDTMRADWLIGIMKLGKFT 117 Query: 300 MVEGSDPSCLLRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSLETITEIDIIKKLER 359 S LR K+K E++ M+ A L W K Sbjct: 118 FQPLSSLIKELRMIKDKEEVKMMEHASRIADKVFEEILTWDLIG-----------MKERE 166 Query: 360 CREEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNG 419 +I +R IAF I ASG +AA H++ + +K ++++LD GA++ Sbjct: 167 LALKIELLIRELSDGIAFEPIVASGENAANPHHEPGERKI---RKGDIIILDYGARWKGY 223 Query: 420 TTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWKYG--A 477 +DITRTI +G+ E+ V+K + + + D+DS AR + K G Sbjct: 224 CSDITRTIGLGE-LDERLVKIYEVVKDAQESAFKAVREGIKAKDVDSRAREVISKAGYGE 282 Query: 478 DFAHGVGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSNEPGYYRCGAFGIRIENVLCVS 537 F H GHG+G L VHE P I + L GM + EPG Y G G+RIE+ + V Sbjct: 283 YFIHRTGHGLG--LDVHEEPY-IGPDGEVILKNGMTFTIEPGIYVPGLGGVRIEDDIVVD 339 Query: 538 EPETINNGECL 548 E G L Sbjct: 340 E----GKGRRL 346 >1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida} SCOP: c.55.2.1 d.127.1.1 Length = 401 Score = 112 bits (280), Expect = 3e-25 Identities = 55/401 (13%), Positives = 113/401 (28%), Gaps = 33/401 (8%) Query: 172 MAYAGRESQEKIRDICKILHQKEVGAVFICDPSSIAWIFNIRGFDIPCSPYPLSRAILYA 231 ++ +E + + L + + A +I + + CS ++ Sbjct: 16 STFSAQEYANRQARLRAHLAAENIDAAIFTSYHNINYYSDFLY----CSFGRPYALVVTE 71 Query: 232 DGKAEIFFDKQYINEQLKALLSAVAIVLDMDMMDSRLVCLARTSMPILI----DPKWISY 287 D I + + + + + D + I D + Sbjct: 72 DDVISISANIDGGQPWRRTVGTDNIVYTDWQRDNYFAAIQQALPKARRIGIEHDHLNLQN 131 Query: 288 RFFKVIAQKNGVMVEGSDPSCLLRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSLET 347 R + +V+ + +R K+ E ++ + + Q Sbjct: 132 RDKLAARYPDAELVDVAAACMRMRMIKSAEEHVMIRHGARIADIGGAAVVEALGDQ---- 187 Query: 348 ITEIDIIKKLERCREEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDEL 407 + E ++ + + + T SG + H T + K ++ Sbjct: 188 VPEYEVALHATQAMVRAIADTFEDVELMDTWTWFQSGINTDGAHNPVTTRKV---NKGDI 244 Query: 408 LLLDSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSI 467 L L+ T + RT+ + + + + ++ + P + Sbjct: 245 LSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIAREL 304 Query: 468 ARIFL-WKYGADFAHGVGHGVGSFL--PVHEGPQGISRTNQEPLLPGMILSNEPGYY--- 521 IFL G GH G+ E + L PGM++S EP Sbjct: 305 NEIFLKHDVLQYRTFGYGHSFGTLSHYYGREAGLELREDIDTVLEPGMVVSMEPMIMLPE 364 Query: 522 -RCGAFGIRIENVLCVSEPETINNGECLMLGFNTLTLCPID 561 GA G R ++L V+E G +T P Sbjct: 365 GLPGAGGYREHDILIVNEN-----------GAENITKFPYG 394 >3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase, manganese, metal-binding, metalloprotease, protease; 2.30A {Alteromonas SP} Length = 517 Score = 110 bits (276), Expect = 7e-25 Identities = 64/451 (14%), Positives = 133/451 (29%), Gaps = 105/451 (23%) Query: 169 MQDMA--YAGR--ESQEKIRDICKILHQKEVGAVFICDPSSIAWIFNIRGFDIPCSPY-- 222 M +A YA Q++ R +I+ ++ + V + + + +P Sbjct: 1 MNKLAVLYAEHIATLQKRTR---EIIERENLDGVVFHSGQAKRQFLDDMYYPFKVNPQFK 57 Query: 223 --------PLSRAILYADGKAEIFF--DKQYINEQLKALLSA------VAIVLDMDMMDS 266 P + K ++ F + ++ + +++ D ++ Sbjct: 58 AWLPVIDNPHCWIVANGTDKPKLIFYRPVDFWHKVPDEPNEYWADYFDIELLVKPDQVEK 117 Query: 267 RLVCLARTSMPILIDPKWISYRFFKVIAQKNGVMVEGSDPSCLLRATKNKVEIEGMQTAH 326 L I + F+++ + + + RA K + E+ M+ A+ Sbjct: 118 LLPYDKARFAYIGEYLEVAQALGFELMNPEPVM-----NFYHYHRAYKTQYELACMREAN 172 Query: 327 IQDGVAMVYFLFWFYSQSLETITEIDIIKKLERCREEIGCKMRNPLRDIAFNTIAASGPH 386 F+ + +E +I + + D + I A + Sbjct: 173 KIAVQGHKAARDAFF----QGKSEFEIQQAYLLATQHSEN-------DNPYGNIVALNEN 221 Query: 387 AAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKG 446 AI+HY L+D+GA + DITRT + T + + Sbjct: 222 CAILHYTHFD--RVAPATHRSFLIDAGANFNGYAADITRTYDFTGEGEFAELVAT-MKQH 278 Query: 447 MISVSTARFPQRT----------------RGCDLDSIARIFLWK---YGADFAHGVGHGV 487 I++ P + ++ ++ + F HG+GH + Sbjct: 279 QIALMNQLAPGKLYGELHLDCHQRVAQTLSDFNIVDLSADEIVAKGITSTFFPHGLGHHI 338 Query: 488 GSFLPVHEGPQGIS---------------RTNQEPLLPGMILSNEPGYYRCGAF------ 526 G L VH+ ++ + + + EPG Y + Sbjct: 339 G--LQVHDVGGFMADEQGAHQEPPEGHPFLRCTRKIEANQVFTIEPGLYFIDSLLGDLAA 396 Query: 527 -------------------GIRIENVLCVSE 538 GIRIE+ + V E Sbjct: 397 TDNNQHINWDKVAELKPFGGIRIEDNIIVHE 427 >3mx6_A Methionine aminopeptidase; seattle structural genomics center for infectious disease, S aminopeptidase, protease, epidermic typhus; 1.70A {Rickettsia prowazekii} PDB: 3mr1_A Length = 262 Score = 100 bits (251), Expect = 1e-21 Identities = 35/261 (13%), Positives = 72/261 (27%), Gaps = 61/261 (23%) Query: 314 KNKVEIEGMQTA-------------HIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERC 360 + + M+ A H++ V T + Sbjct: 9 HTEKDFIKMRAAGKLAAETLDFITDHVKPNV-----------------TTNSLNDLCHNF 51 Query: 361 REEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGT 420 PL F + + + H +++ L+ +++ +D Sbjct: 52 ITSHNAIP-APLNYKGFPKSICTSINHVVCHGIP---NDKPLKNGDIVNIDVTVILDGWY 107 Query: 421 TDITRTIAIGDVDYEKKYYFTLVLKGM-ISVSTARFPQRTRGCDLDSIARIFLWKYG-AD 478 D +R +GDV + K + M + R + D+ + + K+ + Sbjct: 108 GDTSRMYYVGDVAIKPKRLIQVTYDAMMKGIEVVR--PGAKLGDIGYAIQSYAEKHNYSV 165 Query: 479 FAHGVGHGVGSFLPVHEGPQ---GISRTNQEPLLPGMILSNEPGYY-------------- 521 GHG+G H+ P L GM + EP Sbjct: 166 VRDYTGHGIG--RVFHDKPSILNYGRNGTGLTLKEGMFFTVEPMINAGNYDTILSKLDGW 223 Query: 522 ----RCGAFGIRIENVLCVSE 538 R + + E+ + V++ Sbjct: 224 TVTTRDKSLSAQFEHTIGVTK 244 >1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: d.127.1.1 Length = 262 Score = 91.0 bits (225), Expect = 6e-19 Identities = 43/250 (17%), Positives = 76/250 (30%), Gaps = 33/250 (13%) Query: 311 RATKNKVEIEGMQTA-HIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERCREEIGCKMR 369 K EIE M+ A L + T D+ + +++ K Sbjct: 14 IRIKTPSEIEKMKKAGKAVAVA-----LREVRKVIVPGKTAWDVETLVLEIFKKLRVKPA 68 Query: 370 NPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAI 429 S + ++ ++ +++ +D GA Y D T + Sbjct: 69 FKGYGGYKYATCVSVNEEVVHGL---PLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIV 125 Query: 430 GDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWKYGAD-FAHGVGHGVG 488 G+ D K + + + P R D+ + + G + VGHGVG Sbjct: 126 GETDERGKELVRVTREVLEKAIKMIKP-GIRLGDVSHCIQETVESVGFNVIRDYVGHGVG 184 Query: 489 SFLPVHEGPQGI---SRTNQEPLLPGMILSNEPGYYRC-----------------GAFGI 528 +HE PQ + L GM L+ EP G+ Sbjct: 185 --RELHEDPQIPNYGTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCA 242 Query: 529 RIENVLCVSE 538 E+ + ++E Sbjct: 243 HFEHTILITE 252 >1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C; 1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB: 1qxw_A* 1qxz_A* Length = 252 Score = 87.6 bits (216), Expect = 6e-18 Identities = 44/248 (17%), Positives = 85/248 (34%), Gaps = 34/248 (13%) Query: 314 KNKVEIEGMQTA-HIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERCREEIGCKMRNPL 372 K + E++ ++ +I V + + IT ++ + EE G P+ Sbjct: 4 KTEEELQALKEIGYICAKV-----RNTMQAATKPGITTKELDNIAKELFEEYGAI-SAPI 57 Query: 373 RDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDV 432 D F + + H S R++++ +L+ +D A D + +G+ Sbjct: 58 HDENFPGQTCISVNEEVAHGIP---SKRVIREGDLVNIDVSALKNGYYADTGISFVVGES 114 Query: 433 DYEKKYYFTLVLKGMISVSTARF-PQRTRGCDLDSIARIFLWKYGADFAHGVGHGVGSFL 491 D K V + A+ P ++ + GHGVG L Sbjct: 115 DDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVG--L 172 Query: 492 PVHEGPQGI----SRTNQEPLLPGMILSNEPGYY-----------------RCGAFGIRI 530 +HE P + ++ L GM+L+ EP +F +I Sbjct: 173 SLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQI 232 Query: 531 ENVLCVSE 538 E+ + V++ Sbjct: 233 EHTVIVTK 240 >2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific enzyme, aminopeptidase P, manganese enzyme, protease, manganese; HET: CSO; 1.56A {Escherichia coli} SCOP: c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A* 1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A* 2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A* 2bwu_A* 2bww_A* ... Length = 440 Score = 84.0 bits (206), Expect = 9e-17 Identities = 56/271 (20%), Positives = 101/271 (37%), Gaps = 47/271 (17%) Query: 322 MQTAHIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERCREEIGCK--MRNPLRDIAFNT 379 M+ + +A++ + + E E E R+ R ++NT Sbjct: 172 MRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNT 231 Query: 380 IAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAI-GDVDYEKKY 438 I SG + I+HY ++ ++ +L+L+D+G +Y DITRT + G ++ Sbjct: 232 IVGSGENGCILHYT---ENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288 Query: 439 YFTLVLKGMISVSTARFPQRTRGCDLDSIARI-------------------FLWKYGADF 479 + +VL+ + + P + + RI + F Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFF 348 Query: 480 AHGVGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSNEPGYY---------RCGAFGIRI 530 HG+ H +G L VH+ + L PGM+L+ PG Y + GIRI Sbjct: 349 MHGLSHWLG--LDVHDVGV-YGQDRSRILEPGMVLTVAPGLYIAPDAEVPEQYRGIGIRI 405 Query: 531 ENVLCVSE----------PETINNGECLMLG 551 E+ + ++E + E LM+ Sbjct: 406 EDDIVITETGNENLTASVVKKPEEIEALMVA 436 >3ovk_A Aminopeptidase P, XAA-Pro dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.00A {Streptococcus pyogenes} Length = 132 Score = 73.8 bits (181), Expect = 9e-14 Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 18/140 (12%) Query: 16 ERVHNLRSCFDSLGMDAFLVPRVDEYRGEFVDKGSERLAWLSGFTGSAGIAIVLRQKSVI 75 +R+ + G++A LV +L+GF+G+A ++ ++ V+ Sbjct: 10 QRLGHCLRQMAEKGLEALLVTH------------LTNSYYLTGFSGTAATVLITAKRRVL 57 Query: 76 FVDGRYTLQVEKEVDTALFTIKNIAIEPLHAWISEHGFVGLRLGLDSRLHSSFEVDLLQK 135 D RYTL + V+ ++ + + LG + ++ S +Q Sbjct: 58 ITDSRYTLLAKASVEGFDIIESRTPLKVVAELLEAD--QIDCLGFEDQV-SFSFYQAMQA 114 Query: 136 SLDKIEGVIVDVPYNPIDSL 155 L I ++ ++ L Sbjct: 115 ELSGIT--LLAQS-GFVEHL 131 Score = 27.9 bits (62), Expect = 6.9 Identities = 12/118 (10%), Positives = 44/118 (37%), Gaps = 12/118 (10%) Query: 180 QEKIRDICKILHQKEVGAVFICDPSSIAWIFNIRGFDIPCSPYPLSRAILYADGKAEIFF 239 ++++ + + +K + A+ + ++ ++ G + ++ A + + Sbjct: 9 EQRLGHCLRQMAEKGLEALLVTHLTNSYYLTGFSG-----TAA---TVLITAK-RRVLIT 59 Query: 240 DKQYINEQLKALLSAVAIVLDMDMMDS-RLVCLARTSMPILIDPKWISYRFFKVIAQK 296 D +Y KA + I+ + + A + + +S+ F++ + + Sbjct: 60 DSRYT-LLAKASVEGFDIIESRTPLKVVAELLEADQIDCLGFED-QVSFSFYQAMQAE 115 >3iu7_A Methionine aminopeptidase; enzyme-inhibitor complex, cobalt, hydrolase, metal-binding, protease; HET: FCD; 1.40A {Mycobacterium tuberculosis} PDB: 3iu8_A* 3iu9_A* 1y1n_A 1yj3_A Length = 288 Score = 68.7 bits (167), Expect = 4e-12 Identities = 35/249 (14%), Positives = 73/249 (29%), Gaps = 32/249 (12%) Query: 311 RATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERCREEIGCKMRN 370 + IE M+ A A+ +T ++ + + G Sbjct: 42 PWVQTPEVIEKMRVAGRIAAGALAEAG----KAVAPGVTTDELDRIAHEYLVDNGAYPS- 96 Query: 371 PLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIG 430 L F + + I H + + ++ +++ +D A D T G Sbjct: 97 TLGYKGFPKSCCTSLNEVICHG---IPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAG 153 Query: 431 DVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWKYGAD-FAHGVGHGVGS 489 DV E + + + P + + + ++G + GHG+G+ Sbjct: 154 DVADEHRLLVDRTREATMRAINTVKP-GRALSVIGRVIESYANRFGYNVVRDFTGHGIGT 212 Query: 490 FLPVHEGPQ---GISRTNQEPLLPGMILSNEPGYY-----------------RCGAFGIR 529 H G + + PGM + EP + + + Sbjct: 213 T--FHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQ 270 Query: 530 IENVLCVSE 538 E+ L V++ Sbjct: 271 FEHTLLVTD 279 >3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics, PSI, MCSG, protein structure initiative; HET: GOL; 2.20A {Streptococcus thermophilus lmg 18311} Length = 131 Score = 66.6 bits (162), Expect = 1e-11 Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 18/140 (12%) Query: 16 ERVHNLRSCFDSLGMDAFLVPRVDEYRGEFVDKGSERLAWLSGFTGSAGIAIVLRQKSVI 75 R+ + G+DA LV + +L+ F G+ + + + + Sbjct: 6 RRLERFDAKLVQSGLDALLVTG------------QNNIYYLTDFWGTNATVFITKNRRLF 53 Query: 76 FVDGRYTLQVEKEVDTALFTIKNIAIEPLHAWISEHGFVGLRLGLDSRLHSSFEVDLLQK 135 D RYTL ++ V ++ + ++ +G D+++ S LQ Sbjct: 54 LTDSRYTLIAKQSVHGFDIIESKDPLKDIVKFVEVDK--LETIGFDNQV-SFAYYQALQA 110 Query: 136 SLDKIEGVIVDVPYNPIDSL 155 + + N ++ L Sbjct: 111 IFEGYT--LSPQT-NFMEEL 127 >2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor, antibacterial, hydrolase; HET: U12; 1.00A {Escherichia coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A* 2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A* 2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A* 3mat_A* 1yvm_A* 2mat_A ... Length = 263 Score = 65.7 bits (159), Expect = 3e-11 Identities = 32/245 (13%), Positives = 73/245 (29%), Gaps = 28/245 (11%) Query: 314 KNKVEIEGMQTA-HIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERCREEIGCKMRNPL 372 K +IE M+ A + V L ++ ++ + + L Sbjct: 5 KTPEDIEKMRVAGRLAAEV-----LEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACL 59 Query: 373 RDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDV 432 + + + H +LL+ +++ +D D ++ +G Sbjct: 60 GYHGYPKSVCISINEVVCHGIPD--DAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKP 117 Query: 433 DYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWKYG-ADFAHGVGHGVG-SF 490 + + + + P ++ + + F+ G + GHG+G F Sbjct: 118 TIMGERLCRITQESLYLALRMVKPGINL-REIGAAIQKFVEAEGFSVVREYCGHGIGRGF 176 Query: 491 LPVHEGPQGISRTNQEPLLPGMILSNEPGYY-----------------RCGAFGIRIENV 533 + SR L PGM + EP + + + E+ Sbjct: 177 HEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHT 236 Query: 534 LCVSE 538 + V++ Sbjct: 237 IVVTD 241 >2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation, acetylation, peptidase D, polymorphism, collagen degradation, metalloaminopeptidase; 1.82A {Homo sapiens} PDB: 2okn_A Length = 494 Score = 60.9 bits (146), Expect = 8e-10 Identities = 56/325 (17%), Positives = 96/325 (29%), Gaps = 78/325 (24%) Query: 310 LRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERCREEIGCKMR 369 R K +E+E ++ + A + E +LE E Sbjct: 184 CRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKE--------YELESLFEHYCYSRG 235 Query: 370 NPLRDIAFNTIAASGPHAAIIHY-QATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIA 428 R ++ I SG ++A++HY A ++R +Q ++ L D G +Y +DIT + Sbjct: 236 GM-RHSSYTCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFP 294 Query: 429 IGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWK-------------- 474 + + D+ +A + Sbjct: 295 ANGKFTADQKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGSVDA 354 Query: 475 ------YGADFAHGVGHGVGSFLPVH----------EGPQGISRTNQEPLLPGMILSNEP 518 HG+GH +G + + P S L PGM+L+ EP Sbjct: 355 MVQAHLGAVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQPGMVLTVEP 414 Query: 519 GYYRC--------------------------GAFGIRIENVLCVSEPETINNGECLMLGF 552 G Y G G+RIE + V++ G Sbjct: 415 GIYFIDHLLDEALADPARASFFNREVLQRFRGFGGVRIEEDVVVTDS-----------GI 463 Query: 553 NTLTLCPIDRKLILVELLTNEEKKW 577 LT P + I + +K + Sbjct: 464 ELLTCVPRTVEEI-EACMAGCDKAF 487 >1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478 Score = 60.1 bits (145), Expect = 1e-09 Identities = 25/178 (14%), Positives = 48/178 (26%), Gaps = 10/178 (5%) Query: 348 ITEIDIIKKLERCREEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDEL 407 +T I+I +KLE C ++ K +AF T + HY +LQ D++ Sbjct: 191 MTMIEICEKLEDCSRKLI-KENGLNAGLAFPTGC--SLNNCAAHYTPNAGDTTVLQYDDI 247 Query: 408 LLLDSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSI 467 +D G D T+ I + G + + Sbjct: 248 CKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEV 307 Query: 468 ARIFLW-KYGADFAHGVGHGVGSFL---PVHEGPQGI---SRTNQEPLLPGMILSNEP 518 + G + + + + + G + + E Sbjct: 308 MESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIVKGGEATRMEEGEVYAIET 365 >2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitabread fold; HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A 2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A* Length = 329 Score = 56.4 bits (135), Expect = 2e-08 Identities = 38/245 (15%), Positives = 74/245 (30%), Gaps = 30/245 (12%) Query: 314 KNKVEIEGMQTA-HIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERCREEIGCKMRNPL 372 + +IEGM+ + V L +T +I + C +PL Sbjct: 76 LSSEDIEGMRLVCRLAREV-----LDVAAGMIKPGVTTEEIDHAVHLACIARNCY-PSPL 129 Query: 373 RDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDV 432 F + + I H + R LQ+ +++ +D D+ T +G+V Sbjct: 130 NYYNFPKSCCTSVNEVICHG---IPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEV 186 Query: 433 DYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWK--YGADFAHGVGHGVGSF 490 D + + ++ A P R +L +I + + ++ F Sbjct: 187 DDGARKLVQTTYECLMQAIDAVKP-GVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLF 245 Query: 491 LPVHEGPQGISRTNQEPLLPGMILSNEPGYY-----------------RCGAFGIRIENV 533 P + G + + EP R G + E+ Sbjct: 246 HTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHT 305 Query: 534 LCVSE 538 L V++ Sbjct: 306 LLVTD 310 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 51.1 bits (122), Expect = 7e-07 Identities = 83/525 (15%), Positives = 141/525 (26%), Gaps = 228/525 (43%) Query: 8 KSSPSKTFERVH--------------NLRSCFDSLGMDAFLVPRVDEYR---GEFVDKGS 50 K S S F V N F+ L D + Y G+ + + Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL-RDLY-----QTYHVLVGDLIKFSA 192 Query: 51 ERL---------------------AWLSG--------FTGSAGIA---IVLRQKSVIFVD 78 E L WL + S I+ I + Q Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ----LA- 247 Query: 79 GRYTLQVEKEVDTALFTIKNIAIEPLHAWISEHGFVG-LRLGLDSRL-----HSSFEVDL 132 Y + T K + P G LR S L HS Sbjct: 248 -HYVV-----------TAKLLGFTP-----------GELR----SYLKGATGHS------ 274 Query: 133 LQKSLDKIEGVIVDVPYNPIDSLWKDRPQRLYR--KVAMQDMAYAGRESQEKI--RDICK 188 Q G++ V DS W+ + + A+ + + G E + Sbjct: 275 -Q-------GLVTAVAIAETDS-WES----FFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321 Query: 189 ILHQKEV----GAVFICDPSSIAWIFNIRGFDIPCSPYPLSRAILYADGKAEIFFDKQYI 244 + + + G PS + +I L++ + + + +K Sbjct: 322 SILEDSLENNEGV-----PS---PMLSISN---------LTQEQV------QDYVNK--T 356 Query: 245 NEQLKALLSAVAIVLDMDMMDSRLVCLARTSMPILIDPKWISYRFFKVIAQKNGVMVEGS 304 N L + V ++ L++ + V++ G Sbjct: 357 NSHLP---------------AGKQVEIS------LVN----GAKNL-VVS--------GP 382 Query: 305 DPSCL------LRATKNKVEIEGMQTAHI---QDGVAMVY-FLFW---FYSQSLETITEI 351 P L LR K ++ Q + I + + FL F+S L +++ Sbjct: 383 -PQSLYGLNLTLRKAKAPSGLD--Q-SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438 Query: 352 DIIKKLERCREEI-GCKMRNP---------LRDIAFNTIAASGPHA--AIIHYQATVQSN 399 I K L + ++ P LR ++ + II V+ Sbjct: 439 -INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS----ERIVDCIIR--LPVKWE 491 Query: 400 RLLQKDELLLLD------SG-----AQYVNGTTDITRTIAIGDVD 433 Q +LD SG + +GT R I G +D Sbjct: 492 TTTQFKATHILDFGPGGASGLGVLTHRNKDGTG--VRVIVAGTLD 534 Score = 34.9 bits (80), Expect = 0.059 Identities = 36/292 (12%), Positives = 67/292 (22%), Gaps = 138/292 (47%) Query: 370 NPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAI 429 + L++ F P + + EL+ +++ + + Sbjct: 31 SQLQE-QF---NKILPEPT----EGFAADDEPTTPAELV-----GKFLGYVSSL------ 71 Query: 430 GDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWKYGADFAHGVGHGVGS 489 V+ K F VL + F + +L G D H + Sbjct: 72 --VEPSKVGQFDQVLN----LCLTEF-ENC-----------YLE--GND-IHAL---AAK 107 Query: 490 FLPVHEGPQGISRTNQEPLLPGMILSNEPGYYR-CGAFGIRIENV----L--CVSEPE-- 540 L ++ ++ ++ N Y + L V E Sbjct: 108 LLQENDTTLVKTKE---------LIKN---YITARIMAKRPFDKKSNSALFRAVGEGNAQ 155 Query: 541 --TI-----NNGECLMLGFNTLTLCPIDRKLILVELLTNEEKKWCNDYHRRVYTSLAPLI 593 I N + F EL R +Y + L+ Sbjct: 156 LVAIFGGQGNTDDY----FE--------------EL-------------RDLYQTYHVLV 184 Query: 594 ED---------QE-----------------VLSWL----------FSVTAPI 609 D E +L WL + ++ PI Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236 >3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metallo peptidase, creatinase/prolidase N-terminal domain, PSI-2; HET: MSE; 1.46A {Lactobacillus brevis atcc 367} Length = 140 Score = 37.4 bits (86), Expect = 0.008 Identities = 8/134 (5%), Positives = 29/134 (21%), Gaps = 20/134 (14%) Query: 16 ERVHNLRSCFDSLGMDAFLVPRVDEYRGEFVDKGSERLAWLSGFTGS-----AGIAIVLR 70 ++ ++ + + + +L+GF + + Sbjct: 4 TKLEQIQQWTAQHHASMTYL------------SNPKTIEYLTGFGSDPIERVLALVVFPD 51 Query: 71 QKSVIFVDGRYTLQVEKEVDTALFTIKNIAIEPLHAW---ISEHGFVGLRLGLDSRLHSS 127 Q IF +++ P + + + ++ Sbjct: 52 QDPFIFAPALEVEVIKETGWQFPVIGYLDHENPWAMIADQVKQRHVNPEHVAIEKGQLQV 111 Query: 128 FEVDLLQKSLDKIE 141 ++ L Sbjct: 112 ARMEALAAQFSAPS 125 >3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G midwest center for structural genomics; 1.85A {Streptococcus pyogenes m1 gas} Length = 132 Score = 33.9 bits (77), Expect = 0.12 Identities = 18/135 (13%), Positives = 39/135 (28%), Gaps = 18/135 (13%) Query: 17 RVHNLRSCFDSLGMDAFLV--PRVDEYRGEFVDKGSERLAWLSGFTGSAGIAIVLRQKSV 74 ++ +R D G + + P Y F ER +L + V Sbjct: 4 KLDQIRLYLDQKGAELAIFSDPVTINYLTGFFCDPHERQLFLF---------VYHDLAPV 54 Query: 75 IFVDGRYTLQVEKEVDTALFTIKNI--AIEPLHAWISEHGFVGLRLGLDSRLHSSFEVDL 132 +FV + + + +F + E + A + + + + + Sbjct: 55 LFVPALEVARASQAISFPVFGYVDSENPWEKIKAVLPNTA--AKTIYAEFDHLNVNKFHG 112 Query: 133 LQKSLDKIEGVIVDV 147 LQ G ++ Sbjct: 113 LQTIFS---GQFNNL 124 >3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae} Length = 132 Score = 32.0 bits (72), Expect = 0.36 Identities = 15/126 (11%), Positives = 41/126 (32%), Gaps = 15/126 (11%) Query: 17 RVHNLRSCFDSLGMDAFLV--PRVDEYRGEFVDKGSERLAWLSGFTGSAGIAIVLRQKSV 74 +++ +R S+ + + P Y F ER +L + + + Sbjct: 4 KLNRIRHHLHSVQAELAVFSDPVTVNYLTGFFCDPHERQMFLF---------VYEDRDPI 54 Query: 75 IFVDGRYTLQVEKEVDTALFTIKNI--AIEPLHAWISEHGFVGLRLGLDSRLHSSFEVDL 132 +FV + ++ V +F + + + + + ++ + + + Sbjct: 55 LFVPALEVSRAKQSVPFPVFGYIDSENPWQKIASNLPSFSV--SKVLAEFDNLNVTKFQG 112 Query: 133 LQKSLD 138 LQ D Sbjct: 113 LQTVFD 118 >2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Length = 409 Score = 31.0 bits (69), Expect = 0.87 Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 4/113 (3%) Query: 44 EFVDKGSERLAW--LSGFTGSAGIAIVLRQKSVIFVDGRYTLQVEKEVDTALFTIKNIAI 101 E K E + L+ TG GI ++L + Y +++ ++ + + + Sbjct: 17 ERTRKNKENFDFGELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNYIEYIVSKLSTYGL 76 Query: 102 EPLHAWISEHG--FVGLRLGLDSRLHSSFEVDLLQKSLDKIEGVIVDVPYNPI 152 + G L L D + + L + + I I Sbjct: 77 LTGSLYSGAAGIALSILHLREDDEKYKNLLDSLNRYIEYFVREKIEGFNLENI 129 >3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A Length = 533 Score = 29.8 bits (66), Expect = 1.8 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 10/57 (17%) Query: 301 VEGSDPSCL----LRATKNKVEIEGMQTAHIQDGVAMVY-FLF-----WFYSQSLET 347 V G P L LR E+ H+ DG A+++ F F ++ + + T Sbjct: 30 VTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTYHRRFIRT 86 >3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Length = 411 Score = 29.8 bits (66), Expect = 2.0 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 3/93 (3%) Query: 57 SGFTGSAGIAIVLRQKSVIFVDGRYTLQVEKEVDTALFTIKNIAIEPLHAWISEHGFVGL 116 +G+TG AGIA++ +F D Y V +L + +I L G + + Sbjct: 72 TGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLCGDA---GPLAV 128 Query: 117 RLGLDSRLHSSFEVDLLQKSLDKIEGVIVDVPY 149 L ++++ + + L + + P Sbjct: 129 AAVLYHKMNNEKQAEDCITRLIHLNKIDPHAPN 161 >2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal formation, oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Length = 490 Score = 29.4 bits (65), Expect = 2.6 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 11/58 (18%) Query: 301 VEGSDPSCL----LRATKNKVEIEGMQTAHIQDGVAMVY-FLF------WFYSQSLET 347 VEGS P L R +EI H DG MV F F F S+ + T Sbjct: 38 VEGSIPPDLQGTLYRNGPGLLEIGDRPLKHPFDGDGMVTAFKFPGDGRVHFQSKFVRT 95 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 28.6 bits (63), Expect = 3.7 Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 68/179 (37%) Query: 30 MDAFLVPRVDEYRGEFVDKGSERLAWLSGFTGSAGIAIVLRQKSVIFVDGRYTLQVEKEV 89 M+AF GEF +G +AW+ GF + + +G Sbjct: 840 MEAF---------GEFSLEGCVEMAWIMGF--------------ISYHNG---------- 866 Query: 90 DTALFTIKNIAIEPLHAWISEHGFVGLRLGLDSR-LHSSFEVDLLQKSLDKIEGVIVDVP 148 N+ P W+ + +D + + + +E +L+ S G+ + P Sbjct: 867 --------NLKGRPYTGWVDSK----TKEPVDDKDVKAKYETSILEHS-----GIRLIEP 909 Query: 149 -----YNPIDSLWKDRPQRLYRKVAMQDMA--YAGRESQEKIR----DICKILHQKEVG 196 YNP ++ + + + +D+ A +E+ E+ + D I E G Sbjct: 910 ELFNGYNP------EKKEMIQEVIVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETG 962 >1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1 Length = 865 Score = 27.6 bits (61), Expect = 8.6 Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 18/96 (18%) Query: 159 RPQRLYRKVAMQDMAYAGRESQE--KIRDICKI--LHQKEVGAVFICD-----------P 203 RP +AM A G E + + I +I L QK ++ D Sbjct: 191 RPDIPLHALAMLKNAREGIEPDQPGVVGPIKQIEALQQKGFPLAYVGDVVGTGSSRKSAT 250 Query: 204 SSIAWIFNIRGFDIPCSPYPLSRAILYADGKAEIFF 239 +S+ W G DIP P + A IFF Sbjct: 251 NSVLWFM---GDDIPHVPNKRGGGLCLGGKIAPIFF 283 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.139 0.422 Gapped Lambda K H 0.267 0.0606 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 5,380,753 Number of extensions: 256949 Number of successful extensions: 684 Number of sequences better than 10.0: 1 Number of HSP's gapped: 616 Number of HSP's successfully gapped: 42 Length of query: 609 Length of database: 5,693,230 Length adjustment: 98 Effective length of query: 511 Effective length of database: 3,317,318 Effective search space: 1695149498 Effective search space used: 1695149498 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 60 (27.2 bits)