BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780605|ref|YP_003065018.1| putative aminopeptidase
[Candidatus Liberibacter asiaticus str. psy62]
         (609 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780605|ref|YP_003065018.1| putative aminopeptidase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 609

 Score = 1263 bits (3269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/609 (100%), Positives = 609/609 (100%)

Query: 1   MFQSFEMKSSPSKTFERVHNLRSCFDSLGMDAFLVPRVDEYRGEFVDKGSERLAWLSGFT 60
           MFQSFEMKSSPSKTFERVHNLRSCFDSLGMDAFLVPRVDEYRGEFVDKGSERLAWLSGFT
Sbjct: 1   MFQSFEMKSSPSKTFERVHNLRSCFDSLGMDAFLVPRVDEYRGEFVDKGSERLAWLSGFT 60

Query: 61  GSAGIAIVLRQKSVIFVDGRYTLQVEKEVDTALFTIKNIAIEPLHAWISEHGFVGLRLGL 120
           GSAGIAIVLRQKSVIFVDGRYTLQVEKEVDTALFTIKNIAIEPLHAWISEHGFVGLRLGL
Sbjct: 61  GSAGIAIVLRQKSVIFVDGRYTLQVEKEVDTALFTIKNIAIEPLHAWISEHGFVGLRLGL 120

Query: 121 DSRLHSSFEVDLLQKSLDKIEGVIVDVPYNPIDSLWKDRPQRLYRKVAMQDMAYAGRESQ 180
           DSRLHSSFEVDLLQKSLDKIEGVIVDVPYNPIDSLWKDRPQRLYRKVAMQDMAYAGRESQ
Sbjct: 121 DSRLHSSFEVDLLQKSLDKIEGVIVDVPYNPIDSLWKDRPQRLYRKVAMQDMAYAGRESQ 180

Query: 181 EKIRDICKILHQKEVGAVFICDPSSIAWIFNIRGFDIPCSPYPLSRAILYADGKAEIFFD 240
           EKIRDICKILHQKEVGAVFICDPSSIAWIFNIRGFDIPCSPYPLSRAILYADGKAEIFFD
Sbjct: 181 EKIRDICKILHQKEVGAVFICDPSSIAWIFNIRGFDIPCSPYPLSRAILYADGKAEIFFD 240

Query: 241 KQYINEQLKALLSAVAIVLDMDMMDSRLVCLARTSMPILIDPKWISYRFFKVIAQKNGVM 300
           KQYINEQLKALLSAVAIVLDMDMMDSRLVCLARTSMPILIDPKWISYRFFKVIAQKNGVM
Sbjct: 241 KQYINEQLKALLSAVAIVLDMDMMDSRLVCLARTSMPILIDPKWISYRFFKVIAQKNGVM 300

Query: 301 VEGSDPSCLLRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERC 360
           VEGSDPSCLLRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERC
Sbjct: 301 VEGSDPSCLLRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERC 360

Query: 361 REEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGT 420
           REEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGT
Sbjct: 361 REEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGT 420

Query: 421 TDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWKYGADFA 480
           TDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWKYGADFA
Sbjct: 421 TDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWKYGADFA 480

Query: 481 HGVGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSNEPGYYRCGAFGIRIENVLCVSEPE 540
           HGVGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSNEPGYYRCGAFGIRIENVLCVSEPE
Sbjct: 481 HGVGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSNEPGYYRCGAFGIRIENVLCVSEPE 540

Query: 541 TINNGECLMLGFNTLTLCPIDRKLILVELLTNEEKKWCNDYHRRVYTSLAPLIEDQEVLS 600
           TINNGECLMLGFNTLTLCPIDRKLILVELLTNEEKKWCNDYHRRVYTSLAPLIEDQEVLS
Sbjct: 541 TINNGECLMLGFNTLTLCPIDRKLILVELLTNEEKKWCNDYHRRVYTSLAPLIEDQEVLS 600

Query: 601 WLFSVTAPI 609
           WLFSVTAPI
Sbjct: 601 WLFSVTAPI 609


>gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 466

 Score = 25.0 bits (53), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 513 ILSNEPGYYRCGAFGIRIENVLCVSEPETINNGECLMLG 551
           ++   P  Y C     +++N + + E E    G CL +G
Sbjct: 7   VVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIG 45


>gi|254781062|ref|YP_003065475.1| putative aminotransferase involved in iron-sulfur cluster
           biogenesis [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 406

 Score = 25.0 bits (53), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 14/79 (17%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 183 IRDICKILHQKEVGAVFICDPSSIAWIFNIRGFDIPCSPYPLSRAILYADGKAEIFFDKQ 242
           I++IC+I H++ +  +      S+    +++  DI C  Y ++   LY        + K+
Sbjct: 183 IKEICRIAHERNIPVLVDGSQGSVHNFVDVQ--DIDCDWYIITGHKLYGPSGIGGLYSKE 240

Query: 243 YINEQLKALLSAVAIVLDM 261
               ++   +    ++ D+
Sbjct: 241 SRLNEMDPFMGGSEMIADV 259


>gi|255764478|ref|YP_003065205.2| aminopeptidase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 418

 Score = 25.0 bits (53), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 10/16 (62%), Positives = 13/16 (81%)

Query: 465 DSIARIFLWKYGADFA 480
           DS A + L+KYGAD+A
Sbjct: 69  DSEATLMLYKYGADYA 84


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.139    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 392,134
Number of Sequences: 1233
Number of extensions: 16567
Number of successful extensions: 34
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 6
length of query: 609
length of database: 328,796
effective HSP length: 79
effective length of query: 530
effective length of database: 231,389
effective search space: 122636170
effective search space used: 122636170
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 41 (20.4 bits)