HHsearch alignment for GI: 254780606 and conserved domain: COG0324

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis].
Probab=91.22  E-value=0.57  Score=25.66  Aligned_cols=73  Identities=27%  Similarity=0.411  Sum_probs=42.2

Q ss_pred             HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC----CCCCE-------ECCCCCCCCEEEEEEE--CHHHH
Q ss_conf             14846997078753447999999999985680110799972----34210-------0012577520000444--41787
Q gi|254780606|r  411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD----PKMLE-------LSVYDGIPHLLTPVVT--NPKKA  477 (744)
Q Consensus       411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD----~k~~~-------~~~~~~~ph~~~~v~~--~~~~~  477 (744)
T Consensus         2 ~~~~i~I~GPTAsGKT~----lai~LAk~~~~---eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa   74 (308)
T COG0324           2 KPKLIVIAGPTASGKTA----LAIALAKRLGG---EIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSA   74 (308)
T ss_pred             CCCEEEEECCCCCCHHH----HHHHHHHHCCC---CEEECCHHHHCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCH
T ss_conf             96379998988757789----99999998299---289302355318886307999999985899787545683225549


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             6899999986676
Q gi|254780606|r  478 VMALKWAVREMEE  490 (744)
Q Consensus       478 ~~~l~~~~~em~~  490 (744)
T Consensus        75 ~~f~~~a~~~i~~   87 (308)
T COG0324          75 AEFQRDALAAIDD   87 (308)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999999