HHsearch alignment for GI: 254780606 and conserved domain: COG0433

>COG0433 HerA helicase [Replication, recombination, and repair].
Probab=95.49  E-value=0.025  Score=35.00  Aligned_cols=63  Identities=33%  Similarity=0.531  Sum_probs=47.4

Q ss_pred             EEEEEECCCC--CEEECCHHHC---CCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECC
Q ss_conf             8984205788--7321120114---84699707875344799999999998568011079997234210001
Q gi|254780606|r  393 ALCLGKTISG--ESVIADLANM---PHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSV  459 (744)
Q Consensus       393 ~~~~g~~~~g--~~~~~dl~~~---PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~  459 (744)
T Consensus       144 ~l~lg~l~~~~~~~~~~~~~~~~~~~h~~i~~~tgsgks~~~~~l~~~l~~~~---~~~~~~~d~~~-e~~~  211 (520)
T COG0433         144 GLLLGALLDGGEVPVYLDLNKLVLARHIAILGSTGSGKSNLAKVLLEELLGKD---GATVVIFDPHG-EYDL  211 (520)
T ss_pred             CEECCCCCCCCCEEEEECCCCCCHHHHHEEEEECCCCHHHHHHHHHHHHHCCC---CCEEEEECCCC-HHHH
T ss_conf             50120202677503663476320112322441026622899999999863347---87199978876-0666