HHsearch alignment for GI: 254780606 and conserved domain: COG0433
>COG0433 HerA helicase [Replication, recombination, and repair].
Probab=95.49 E-value=0.025 Score=35.00 Aligned_cols=63 Identities=33% Similarity=0.531 Sum_probs=47.4
Q ss_pred EEEEEECCCC--CEEECCHHHC---CCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECC
Q ss_conf 8984205788--7321120114---84699707875344799999999998568011079997234210001
Q gi|254780606|r 393 ALCLGKTISG--ESVIADLANM---PHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSV 459 (744)
Q Consensus 393 ~~~~g~~~~g--~~~~~dl~~~---PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~ 459 (744)
T Consensus 144 ~l~lg~l~~~~~~~~~~~~~~~~~~~h~~i~~~tgsgks~~~~~l~~~l~~~~---~~~~~~~d~~~-e~~~ 211 (520)
T COG0433 144 GLLLGALLDGGEVPVYLDLNKLVLARHIAILGSTGSGKSNLAKVLLEELLGKD---GATVVIFDPHG-EYDL 211 (520)
T ss_pred CEECCCCCCCCCEEEEECCCCCCHHHHHEEEEECCCCHHHHHHHHHHHHHCCC---CCEEEEECCCC-HHHH
T ss_conf 50120202677503663476320112322441026622899999999863347---87199978876-0666