HHsearch alignment for GI: 254780606 and conserved domain: COG0467

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms].
Probab=92.83  E-value=0.74  Score=24.87  Aligned_cols=188  Identities=15%  Similarity=0.152  Sum_probs=82.1

Q ss_pred             HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCE-----------ECCCCCCCCEEEEE-EECHHH
Q ss_conf             011484699707875344799999999998568011079997234210-----------00125775200004-444178
Q gi|254780606|r  409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLE-----------LSVYDGIPHLLTPV-VTNPKK  476 (744)
Q Consensus       409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~-----------~~~~~~~ph~~~~v-~~~~~~  476 (744)
T Consensus        20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~~~~~   97 (260)
T COG0467          20 LPRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFLSEKG   97 (260)
T ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHHC--CCEEEEEEEECCHHHHHHHHHHCCCCHHHHHHCCEEEEEECCCCCCC
T ss_conf             8899789999389986899999999977626--98589999206989999999880997789754440687631211125


Q ss_pred             HHH-HHH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHH--HCCHHHHH
Q ss_conf             768-999--9998667699999980778679999988642026776665432338679998445687675--31035899
Q gi|254780606|r  477 AVM-ALK--WAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMM--VAGKEIEG  551 (744)
Q Consensus       477 ~~~-~l~--~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~--~~~~~~e~  551 (744)
T Consensus        98 ~~~~~~~~~~~~~~l~~~-----------I~~~~------------------~~~~~~~~ViDsi~~~~~~~~~~~~~r~  148 (260)
T COG0467          98 LVSIVVGDPLDLEELLDR-----------IREIV------------------EKEGADRVVIDSITELTLYLNDPALVRR  148 (260)
T ss_pred             CCCCCCCCCCCHHHHHHH-----------HHHHH------------------HHCCCCEEEEECCHHHHHHCCCHHHHHH
T ss_conf             420104665228999999-----------99999------------------8628988999663077665278257899


Q ss_pred             HHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCEE-EECCC-CCEE
Q ss_conf             999999964201358999851654444146788505630572036811100326763168856898468-64689-8438
Q gi|254780606|r  552 AIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDML-YMSGG-GRIQ  629 (744)
Q Consensus       552 ~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~l-~~~~~-~~~~  629 (744)
T Consensus       149 ~~~~l~~~~~~~~~t~~~~~~~~~~~~~~~-------~~~~~----~vdgvI~l~~~~~~~~~~r~~~~i~k~r~~~~~~  217 (260)
T COG0467         149 ILLLLKRFLKKLGVTSLLTTEAPVEERGES-------GVEEY----IVDGVIRLDLKEIEGGGDRRYLRILKMRGTPHSL  217 (260)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCCCCC-------CCEEE----EEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCC
T ss_conf             999999876506848999974433466656-------61421----6899999977722572488899998346733577


Q ss_pred             EEEECCCCH
Q ss_conf             999343898
Q gi|254780606|r  630 RVHGPLVSD  638 (744)
Q Consensus       630 r~~~~~~~~  638 (744)
T Consensus       218 ~~~~~~i~~  226 (260)
T COG0467         218 KVIPFEITD  226 (260)
T ss_pred             CEEEEEEEC
T ss_conf             459999827