HHsearch alignment for GI: 254780606 and conserved domain: COG0467
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms].
Probab=92.83 E-value=0.74 Score=24.87 Aligned_cols=188 Identities=15% Similarity=0.152 Sum_probs=82.1
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCE-----------ECCCCCCCCEEEEE-EECHHH
Q ss_conf 011484699707875344799999999998568011079997234210-----------00125775200004-444178
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLE-----------LSVYDGIPHLLTPV-VTNPKK 476 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~-----------~~~~~~~ph~~~~v-~~~~~~ 476 (744)
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~~~~~ 97 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFLSEKG 97 (260)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHC--CCEEEEEEEECCHHHHHHHHHHCCCCHHHHHHCCEEEEEECCCCCCC
T ss_conf 8899789999389986899999999977626--98589999206989999999880997789754440687631211125
Q ss_pred HHH-HHH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHH--HCCHHHHH
Q ss_conf 768-999--9998667699999980778679999988642026776665432338679998445687675--31035899
Q gi|254780606|r 477 AVM-ALK--WAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMM--VAGKEIEG 551 (744)
Q Consensus 477 ~~~-~l~--~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~--~~~~~~e~ 551 (744)
T Consensus 98 ~~~~~~~~~~~~~~l~~~-----------I~~~~------------------~~~~~~~~ViDsi~~~~~~~~~~~~~r~ 148 (260)
T COG0467 98 LVSIVVGDPLDLEELLDR-----------IREIV------------------EKEGADRVVIDSITELTLYLNDPALVRR 148 (260)
T ss_pred CCCCCCCCCCCHHHHHHH-----------HHHHH------------------HHCCCCEEEEECCHHHHHHCCCHHHHHH
T ss_conf 420104665228999999-----------99999------------------8628988999663077665278257899
Q ss_pred HHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCEE-EECCC-CCEE
Q ss_conf 999999964201358999851654444146788505630572036811100326763168856898468-64689-8438
Q gi|254780606|r 552 AIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDML-YMSGG-GRIQ 629 (744)
Q Consensus 552 ~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~l-~~~~~-~~~~ 629 (744)
T Consensus 149 ~~~~l~~~~~~~~~t~~~~~~~~~~~~~~~-------~~~~~----~vdgvI~l~~~~~~~~~~r~~~~i~k~r~~~~~~ 217 (260)
T COG0467 149 ILLLLKRFLKKLGVTSLLTTEAPVEERGES-------GVEEY----IVDGVIRLDLKEIEGGGDRRYLRILKMRGTPHSL 217 (260)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCCCCC-------CCEEE----EEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCC
T ss_conf 999999876506848999974433466656-------61421----6899999977722572488899998346733577
Q ss_pred EEEECCCCH
Q ss_conf 999343898
Q gi|254780606|r 630 RVHGPLVSD 638 (744)
Q Consensus 630 r~~~~~~~~ 638 (744)
T Consensus 218 ~~~~~~i~~ 226 (260)
T COG0467 218 KVIPFEITD 226 (260)
T ss_pred CEEEEEEEC
T ss_conf 459999827