HHsearch alignment for GI: 254780606 and conserved domain: COG3451
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion].
Probab=98.88 E-value=4.3e-07 Score=67.65 Aligned_cols=219 Identities=18% Similarity=0.259 Sum_probs=121.8
Q ss_pred CCCCCCEEEEEEECCCCCEEECCHHH---CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEEC----
Q ss_conf 14678368984205788732112011---48469970787534479999999999856801107999723421000----
Q gi|254780606|r 386 SHSKANLALCLGKTISGESVIADLAN---MPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS---- 458 (744)
Q Consensus 386 ~~~~~~l~~~~g~~~~g~~~~~dl~~---~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~---- 458 (744)
T Consensus 407 ~~n~wg~~l~~~kt~~~sPf~~nfH~~~d~ghT~I~G~tGaGKTvLl~~lla~~~k~~~---~~iv~fDk~~g~~~~~~a 483 (796)
T COG3451 407 RGNPWGEPLTVLKTEDGSPFYFNFHVGEDVGHTLIIGPTGAGKTVLLSFLLAQALKYGN---PQIVAFDKDNGAYIFIEA 483 (796)
T ss_pred CCCCCCCCCEEEECCCCCCEEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC---CCEEEECCCCCHHHHHHH
T ss_conf 68889975054204899962564355667697499889888789999999999987459---818998489735778887
Q ss_pred ---CCC----CCCCEEEEE--EECHHH-HHHHHHHHHHHHHH----------H-----HHHHHHC--CCCCHHHHH----
Q ss_conf ---125----775200004--444178-76899999986676----------9-----9999980--778679999----
Q gi|254780606|r 459 ---VYD----GIPHLLTPV--VTNPKK-AVMALKWAVREMEE----------R-----YRKMSHL--SVRNIKSYN---- 507 (744)
Q Consensus 459 ---~~~----~~ph~~~~v--~~~~~~-~~~~l~~~~~em~~----------r-----~~~~~~~--~~~~i~~~n---- 507 (744)
T Consensus 484 ~gG~y~~l~~~~~~~~NPf~~l~~t~~n~~fl~~~~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~l~~~l~ 563 (796)
T COG3451 484 LGGEYLDLEPGVPSGFNPFEILEDTDENREFLAEWLVKLLAHEGISLSPAEERAISAAINNLATAPKEDRTFSDLIELLG 563 (796)
T ss_pred HCCEEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHC
T ss_conf 49887535678774608411037865668999999999963267666567888999999875447522474889998852
Q ss_pred ---------HHHHHHHC---------CCCCCCC--------------------------------CCCCCCCEEEEEHHH
Q ss_conf ---------98864202---------6776665--------------------------------432338679998445
Q gi|254780606|r 508 ---------ERISTMYG---------EKPQGCG--------------------------------DDMRPMPYIVIIVDE 537 (744)
Q Consensus 508 ---------~~~~~~~~---------~~~~~~~--------------------------------~~~~~~p~ivvviDE 537 (744)
T Consensus 564 ~~~~~~~l~srL~~~~~~g~~~~lfD~~~~~l~~~~~v~~fD~~~~l~~~~~~~~~~~YlFhri~~~~dgr-~~~i~iDE 642 (796)
T COG3451 564 IKERPNSLASRLAPWCEGGLFGWLFDNDDDSLKGDLSVIGFDMTELLDNPKVLAPVLLYLFHRIEERLDGR-PFLIFIDE 642 (796)
T ss_pred CCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHHHCCC-CEEEEEHH
T ss_conf 68684228898888860442566624854112466517985135414665568999999999988872489-55998104
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCC----CHHHHHHCCCCEEEEECCCHHH--CCHHCCCCCHH
Q ss_conf 68767531035899999999964201358999851654444----1467885056305720368111--00326763168
Q gi|254780606|r 538 MADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDV----ITGTIKANFPIRISFQVTSKID--SRTILGEHGAE 611 (744)
Q Consensus 538 ~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~v----i~~~ik~n~~~ri~~~v~~~~d--sr~il~~~gae 611 (744)
T Consensus 643 ~w~~l~--~~~f~~~i~~~lkt~RK~Ng~vvfatQs~~-d~~~s~iA~~~ie~~~t~Iflpn~~~~~~~~~~~f~l~~~e 719 (796)
T COG3451 643 FWKLLD--NPKFADFIRDWLKTLRKLNGVVVFATQSIL-DILKSRIADAIIEQCPTKIFLPNPKAIEADYYRGFGLTERE 719 (796)
T ss_pred HHHHCC--CHHHHHHHHHHHHHHHHHCCEEEEECCCHH-HHHCCHHHHHHHHHCCEEEECCCCCCCCHHCCCCCCCCHHH
T ss_conf 678558--888999999999998860754998526688-77436368999961871897678655530001102786567