HHsearch alignment for GI: 254780606 and conserved domain: COG3598
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair].
Probab=93.97 E-value=0.49 Score=26.09 Aligned_cols=146 Identities=12% Similarity=0.106 Sum_probs=73.2
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHH
Q ss_conf 14846997078753447999999999985680110799972342100012577520000444417876899999986676
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEE 490 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~ 490 (744)
T Consensus 88 ~g~~~~~~gdsg~GKttllL~l~Iala--aG~~lfG~~v~epGkvlyv----------slEl~re~~L~Rl~~v~a~mg- 154 (402)
T COG3598 88 KGYVSILYGDSGVGKTTLLLYLCIALA--AGKNLFGNKVKEPGKVLYV----------SLELYREDILERLEPVRARMG- 154 (402)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH--HHHHHHCCCCCCCCEEEEE----------EECCCHHHHHHHHHHHHHHCC-
T ss_conf 170589844886237689999999998--6477745335588807999----------822686889999999998709-
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCCCC-----CCCCCCCCCCCEEEEEHHHHHHHHHH---CCHHHHHHHHHHHHHHHC
Q ss_conf 9999998077867999998864202677-----66654323386799984456876753---103589999999996420
Q gi|254780606|r 491 RYRKMSHLSVRNIKSYNERISTMYGEKP-----QGCGDDMRPMPYIVIIVDEMADLMMV---AGKEIEGAIQRLAQMARA 562 (744)
Q Consensus 491 r~~~~~~~~~~~i~~~n~~~~~~~~~~~-----~~~~~~~~~~p~ivvviDE~a~l~~~---~~~~~e~~~~~la~~~ra 562 (744)
T Consensus 155 ----LsPadvrn~dltd~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~rkla~~ 230 (402)
T COG3598 155 ----LSPADVRNMDLTDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGKSISDVQVKEFIKKTRKLARN 230 (402)
T ss_pred ----CCHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf ----9857632200002456787200105899999999998747874997344542277411168999999999999986
Q ss_pred CEEEEEEEECC
Q ss_conf 13589998516
Q gi|254780606|r 563 AGIHLIMATQR 573 (744)
Q Consensus 563 ~GihlilatQr 573 (744)
T Consensus 231 l~caIiy~hHt 241 (402)
T COG3598 231 LECAIIYIHHT 241 (402)
T ss_pred CCCEEEEEECC
T ss_conf 27739999445