HHsearch alignment for GI: 254780606 and conserved domain: COG3598

>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair].
Probab=93.97  E-value=0.49  Score=26.09  Aligned_cols=146  Identities=12%  Similarity=0.106  Sum_probs=73.2

Q ss_pred             HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHH
Q ss_conf             14846997078753447999999999985680110799972342100012577520000444417876899999986676
Q gi|254780606|r  411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEE  490 (744)
Q Consensus       411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~  490 (744)
T Consensus        88 ~g~~~~~~gdsg~GKttllL~l~Iala--aG~~lfG~~v~epGkvlyv----------slEl~re~~L~Rl~~v~a~mg-  154 (402)
T COG3598          88 KGYVSILYGDSGVGKTTLLLYLCIALA--AGKNLFGNKVKEPGKVLYV----------SLELYREDILERLEPVRARMG-  154 (402)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH--HHHHHHCCCCCCCCEEEEE----------EECCCHHHHHHHHHHHHHHCC-
T ss_conf             170589844886237689999999998--6477745335588807999----------822686889999999998709-


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHCCCC-----CCCCCCCCCCCEEEEEHHHHHHHHHH---CCHHHHHHHHHHHHHHHC
Q ss_conf             9999998077867999998864202677-----66654323386799984456876753---103589999999996420
Q gi|254780606|r  491 RYRKMSHLSVRNIKSYNERISTMYGEKP-----QGCGDDMRPMPYIVIIVDEMADLMMV---AGKEIEGAIQRLAQMARA  562 (744)
Q Consensus       491 r~~~~~~~~~~~i~~~n~~~~~~~~~~~-----~~~~~~~~~~p~ivvviDE~a~l~~~---~~~~~e~~~~~la~~~ra  562 (744)
T Consensus       155 ----LsPadvrn~dltd~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~rkla~~  230 (402)
T COG3598         155 ----LSPADVRNMDLTDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGKSISDVQVKEFIKKTRKLARN  230 (402)
T ss_pred             ----CCHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             ----9857632200002456787200105899999999998747874997344542277411168999999999999986


Q ss_pred             CEEEEEEEECC
Q ss_conf             13589998516
Q gi|254780606|r  563 AGIHLIMATQR  573 (744)
Q Consensus       563 ~GihlilatQr  573 (744)
T Consensus       231 l~caIiy~hHt  241 (402)
T COG3598         231 LECAIIYIHHT  241 (402)
T ss_pred             CCCEEEEEECC
T ss_conf             27739999445