HHsearch alignment for GI: 254780606 and conserved domain: COG3839

Probab=96.16  E-value=0.016  Score=36.24  Aligned_cols=160  Identities=20%  Similarity=0.332  Sum_probs=87.2

Q ss_pred             EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC-------CC----CCEECCCCCCCCEEEEEEEC
Q ss_conf             21120114846997078753447999999999985680110799972-------34----21000125775200004444
Q gi|254780606|r  405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD-------PK----MLELSVYDGIPHLLTPVVTN  473 (744)
Q Consensus       405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD-------~k----~~~~~~~~~~ph~~~~v~~~  473 (744)
T Consensus        22 i~l~i~~Gef~vllGPSGcGKSTlLr-~IAGLe---~p~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhMt--V~--   93 (338)
T COG3839          22 VNLDIEDGEFVVLLGPSGCGKSTLLR-MIAGLE---EPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMT--VY--   93 (338)
T ss_pred             CEEEECCCCEEEEECCCCCCHHHHHH-HHHCCC---CCCCCEEEECCEECCCCCHHHCCEEEEECCCCCCCCCC--HH--
T ss_conf             26897479799998999888899999-996887---78871599999999989955788899937830157876--99--


Q ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHCCCCCHHH------------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHH
Q ss_conf             17876899999---986676999999807786799------------999886420267766654323386799984456
Q gi|254780606|r  474 PKKAVMALKWA---VREMEERYRKMSHLSVRNIKS------------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDEM  538 (744)
Q Consensus       474 ~~~~~~~l~~~---~~em~~r~~~~~~~~~~~i~~------------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~  538 (744)
T Consensus        94 -~Niaf~Lk~~~~~k~ei~~rV~eva~--~L~l~~lL~r~P~~LSGGQrQRVAlaRAlV---------r~P~v~-L~DEP  160 (338)
T COG3839          94 -ENIAFGLKLRGVPKAEIDKRVKEVAK--LLGLEHLLNRKPLQLSGGQRQRVALARALV---------RKPKVF-LLDEP  160 (338)
T ss_pred             -HHHHHHHHHCCCCHHHHHHHHHHHHH--HCCCHHHHHCCCCCCCHHHHHHHHHHHHHH---------CCCCEE-EECCC
T ss_conf             -97341664479956888999999998--739866773590117725678999987775---------478878-84476


Q ss_pred             -HHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEEC
Q ss_conf             -876753103589999999996420135899985165444414678850563057203
Q gi|254780606|r  539 -ADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQV  595 (744)
Q Consensus       539 -a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v  595 (744)
T Consensus       161 lSnL--Da-klR~~mr~eik~l~~~l~~T~IYVTHDq~-EAm------tladri~Vm~  208 (338)
T COG3839         161 LSNL--DA-KLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAM------TLADRIVVMN  208 (338)
T ss_pred             HHHH--HH-HHHHHHHHHHHHHHHHCCCCEEEECCCHH-HHH------HHCCEEEEEE
T ss_conf             4676--59-99999999999999860984899808999-998------4088799996