HHsearch alignment for GI: 254780606 and conserved domain: COG4962
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].
Probab=96.57 E-value=0.0026 Score=41.67 Aligned_cols=175 Identities=22% Similarity=0.330 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCC------EEEEEEEECCCEEEEEEECCCCCCHH--------HHHHHHHHHHHHHCC--
Q ss_conf 00788998899999987403551------38986764892589997548886399--------998599999987147--
Q gi|254780606|r 285 ITHEILEKNAGSLETILEEFGIK------GEIINVNPGPVVTLYEFEPAPGIKSS--------RVIGLADDIARSMSS-- 348 (744)
Q Consensus 285 ~~~~~~~~~~~~l~~~l~~~~~~------~~~~~~~~gp~~~~~~~~~~~g~~~~--------~~~~~~~d~~~~~~~-- 348 (744)
T Consensus 28 ~~~~e~~~l~~~i~~~~~g~G~Le~ll~dd~i~dImVn~~~~v~v~~-~~~~~~t~irf~d~~~l~~ii~ria~~vgrri 106 (355)
T COG4962 28 ISEAELDSLARDIQDELTGYGPLEPLLADDDIEDIMVNGPGRVFVER-KGGLEPTDIRFLDEAALLRIIQRIAAAVGRRI 106 (355)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEEECCCCCEEEEE-CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 22578999999999875062320034408974168862787389993-27454578624898999999999999858810
Q ss_pred --CCCEE-EEECCCCEEEEECCCCCCCEEEH-HHHHCCHHHCCCCCCEEEEEEECC---CCCEEECCHHH-CCCEEEEEC
Q ss_conf --76327-75189834544268888870765-875128121146783689842057---88732112011-484699707
Q gi|254780606|r 349 --LSARV-AVIPKRNAIGIELPNETRETVYL-RQIIESRSFSHSKANLALCLGKTI---SGESVIADLAN-MPHILVAGT 420 (744)
Q Consensus 349 --~~~~~-~~~pg~~~~~~~~p~~~~~~v~~-~~~~~~~~~~~~~~~l~~~~g~~~---~g~~~~~dl~~-~PH~lvaG~ 420 (744)
T Consensus 107 D~~~P~~darLpdGsRvna~~p-----Pva~dGp~lsIRKf~k~~ltl~dli~~gt~~~~~a~~L~~av~~r~NILisGG 181 (355)
T COG4962 107 DESQPIVDARLPDGSRLNANSP-----PVAIDGPTLSIRKFPKIKLTLLDLIIFGTMIRRAAKFLRRAVGIRCNILISGG 181 (355)
T ss_pred CCCCCEEEEECCCCCEEEEECC-----CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCEEEEEECC
T ss_conf 4689636526798866775248-----63257875044125655255999987389588999999999862015999678
Q ss_pred CCCCHHHHHHHHHHHHHHHCCHHHEEEEEE-CCCCCEECCCCCCCCEEEEEEECHH
Q ss_conf 875344799999999998568011079997-2342100012577520000444417
Q gi|254780606|r 421 TGSGKSVAINTMIMSLLYRLRPDECRMIMV-DPKMLELSVYDGIPHLLTPVVTNPK 475 (744)
Q Consensus 421 TgsGKS~~l~~~i~sl~~~~~p~~~~~~li-D~k~~~~~~~~~~ph~~~~v~~~~~ 475 (744)
T Consensus 182 TGSGKTTlLNal~----~~i~~~e-RvItiEDtaELql~----~ph~vr-L~TR~~ 227 (355)
T COG4962 182 TGSGKTTLLNALS----GFIDSDE-RVITIEDTAELQLA----HPHVVR-LETRPP 227 (355)
T ss_pred CCCCHHHHHHHHH----HCCCCCC-EEEEEEEHHHHCCC----CCCEEE-EEECCC
T ss_conf 7887999999997----1579765-08998123664469----985578-863488