HHsearch alignment for GI: 254780606 and conserved domain: COG5008
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=96.69 E-value=0.0058 Score=39.30 Aligned_cols=110 Identities=32% Similarity=0.472 Sum_probs=65.8
Q ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE-CCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 11484699707875344799999999998568011079997-23421000125775200004444178768999999866
Q gi|254780606|r 410 ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV-DPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREM 488 (744)
Q Consensus 410 ~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li-D~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em 488 (744)
T Consensus 125 ~kRGLviiVGaTGSGKSTtmAaMi~---yRN~~s~gHIiTIEDP--IEfih----~h~-~CIvTQREvGvDTesw~~Alk 194 (375)
T COG5008 125 AKRGLVIIVGATGSGKSTTMAAMIG---YRNKNSTGHIITIEDP--IEFIH----KHK-RCIVTQREVGVDTESWEVALK 194 (375)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHC---CCCCCCCCCEEEECCH--HHHHH----CCC-CEEEEEEEECCCHHHHHHHHH
T ss_conf 4374599987788884016899860---1346887735882381--99874----156-415873341446188999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 76999999807786799999886420267766654323386799984456876753103589999999996420135899
Q gi|254780606|r 489 EERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLI 568 (744)
Q Consensus 489 ~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihli 568 (744)
T Consensus 195 ------------------Ntl----------------RQaP-DvI~IGEvRsr-----etMe-yAi~fAeTG-----HLc 228 (375)
T COG5008 195 ------------------NTL----------------RQAP-DVILIGEVRSR-----ETME-YAIQFAETG-----HLC 228 (375)
T ss_pred ------------------HHH----------------HCCC-CEEEEEECCCH-----HHHH-HHHHHHHCC-----CEE
T ss_conf ------------------877----------------5189-86999730437-----6799-999887328-----658
Q ss_pred EEECCCC
Q ss_conf 9851654
Q gi|254780606|r 569 MATQRPS 575 (744)
Q Consensus 569 latQrp~ 575 (744)
T Consensus 229 maTLHAN 235 (375)
T COG5008 229 MATLHAN 235 (375)
T ss_pred EEEECCC
T ss_conf 9985057