HHsearch alignment for GI: 254780606 and conserved domain: PRK05564
>PRK05564 DNA polymerase III subunit delta'; Validated.
Probab=92.92 E-value=0.69 Score=25.07 Aligned_cols=138 Identities=17% Similarity=0.274 Sum_probs=67.9
Q ss_pred HHCCC-EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 11484-69970787534479999999999856801107999723421000125775200004444178768999999866
Q gi|254780606|r 410 ANMPH-ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREM 488 (744)
Q Consensus 410 ~~~PH-~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em 488 (744)
T Consensus 23 ~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~-~~~~-----------~------~~D~~~---~~~~~~~---------- 71 (313)
T PRK05564 23 GKFSHASLIVGEDGIGKSILAKEIANKILGK-SEQR-----------E------YVDIIE---YKPINKK---------- 71 (313)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCCC-----------C------CCCEEE---EECCCCC----------
T ss_conf 9987504327999850999999999998289-9778-----------8------986588---6332256----------
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 76999999807786799999886420267766654323386799984456876753103589999999996420135899
Q gi|254780606|r 489 EERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLI 568 (744)
Q Consensus 489 ~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihli 568 (744)
T Consensus 72 --------~I~vd~IR~l~~~~~~~---p~~--------g~~KV~II~~ae~m~~~----AaNALLKtLEE-PP~~t~fI 127 (313)
T PRK05564 72 --------SIGVDDIRNIIEEVNKK---PYE--------GDKKVIIIYKSEKMTEQ----AQNAFLKTIEE-PPKGVFII 127 (313)
T ss_pred --------CCCHHHHHHHHHHHHHC---CCC--------CCCEEEEECCHHHHCHH----HHHHHHHCCCC-CCCCEEEE
T ss_conf --------99989999999998408---625--------89569998077775899----99998455036-89985899
Q ss_pred EEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHC
Q ss_conf 9851654444146788505630572036811100326
Q gi|254780606|r 569 MATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTIL 605 (744)
Q Consensus 569 latQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il 605 (744)
T Consensus 128 L~t~~~~-~lLpT-I~SRC-Q~~~f~~l~~~~i~~~L 161 (313)
T PRK05564 128 LLCENLE-QILDT-IKSRC-QIYKLNRLSKEDIEKFI 161 (313)
T ss_pred EEECCHH-HCCCH-HHCCC-EEEECCCCCHHHHHHHH
T ss_conf 8649835-47577-87065-35668998999999999