HHsearch alignment for GI: 254780606 and conserved domain: PRK05748
>PRK05748 replicative DNA helicase; Provisional.
Probab=96.37 E-value=0.031 Score=34.30 Aligned_cols=150 Identities=17% Similarity=0.171 Sum_probs=71.6
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEEC-------CCCCCCC--EEEEEEECHHHHHH
Q ss_conf 01148469970787534479999999999856801107999723421000-------1257752--00004444178768
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS-------VYDGIPH--LLTPVVTNPKKAVM 479 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~-------~~~~~ph--~~~~v~~~~~~~~~ 479 (744)
T Consensus 200 ~~~g~LiviaaRP~mGKTa~alnia~~~a~~~~---~~v~~fSlEM~~~~l~~R~la~~s~v~~~~i~~g~l~~~~~--~ 274 (448)
T PRK05748 200 LQPNDLIIVAARPSVGKTAFALNIAQNVATKTD---KNVAIFSLEMGAESLVMRMLCAEGRIDQQKLRTGQLTDEDW--P 274 (448)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC---CEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHCCCCCHHHH--H
T ss_conf 886737999847998768999999999998569---80899817788889999999997467777776289999999--9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC-------HHHHHH
Q ss_conf 9999998667699999980778679999988642026776665432338679998445687675310-------358999
Q gi|254780606|r 480 ALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG-------KEIEGA 552 (744)
Q Consensus 480 ~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~-------~~~e~~ 552 (744)
T Consensus 275 ~~~~a~~~l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~-----~---~--~~~vviDYlq-li~~~~~~~~~r~~ev~~i 343 (448)
T PRK05748 275 KLTIAVGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEH-----G---G--LGLIVIDYLQ-LIQGSGRSGENRQQEVSEI 343 (448)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC-----C---C--CCEEEEEHHH-HCCCCCCCCCCHHHHHHHH
T ss_conf 99999999865983785589886899999999999975-----9---9--8899971686-4477787764399999999
Q ss_pred HHHHHHHHHCCEEEEEEEECCC
Q ss_conf 9999996420135899985165
Q gi|254780606|r 553 IQRLAQMARAAGIHLIMATQRP 574 (744)
Q Consensus 553 ~~~la~~~ra~GihlilatQrp 574 (744)
T Consensus 344 sr~lK~lAkel~ipvi~lsQLn 365 (448)
T PRK05748 344 SRSLKALAKELKVPVIALSQLS 365 (448)
T ss_pred HHHHHHHHHHHCCCEEEECCCC
T ss_conf 9999999999699889970268