HHsearch alignment for GI: 254780606 and conserved domain: PRK06904
>PRK06904 replicative DNA helicase; Validated.
Probab=95.29 E-value=0.19 Score=28.99 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=71.3
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEEC-------CCCCCCC--EEEE-EEECHHHHH
Q ss_conf 01148469970787534479999999999856801107999723421000-------1257752--0000-444417876
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS-------VYDGIPH--LLTP-VVTNPKKAV 478 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~-------~~~~~ph--~~~~-v~~~~~~~~ 478 (744)
T Consensus 218 l~~g~LiViAaRPsmGKTa~alnia~n~A~~~~---~~V~~fSLEM~~~~l~~R~ls~~s~v~~~~i~~g~~l~~~-e-~ 292 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMASE---KPVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTGQNLDQQ-D-W 292 (472)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC---CCEEEECCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHH-H-H
T ss_conf 875757999737987568999999999999559---9579977879999999999998649998886468856099-9-9
Q ss_pred HHHHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC----H--HHHH
Q ss_conf 89999998667699999-980778679999988642026776665432338679998445687675310----3--5899
Q gi|254780606|r 479 MALKWAVREMEERYRKM-SHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG----K--EIEG 551 (744)
Q Consensus 479 ~~l~~~~~em~~r~~~~-~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~----~--~~e~ 551 (744)
T Consensus 293 ~~~~~~~~~l~~~~~l~idd~~~~t~~~i~~~~r~~~~~~-----~~---l--~~vvIDYLq-L~~~~~~~~~r~~ei~~ 361 (472)
T PRK06904 293 AKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYREN-----GG---L--SLIMVDYLQ-LMRAPGFEDNRTLEIAE 361 (472)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC-----CC---C--CEEEEEHHH-HCCCCCCCCCHHHHHHH
T ss_conf 9999999998468981684699999999999999999873-----89---9--789963886-60488877778899999
Q ss_pred HHHHHHHHHHCCEEEEEEEEC
Q ss_conf 999999964201358999851
Q gi|254780606|r 552 AIQRLAQMARAAGIHLIMATQ 572 (744)
Q Consensus 552 ~~~~la~~~ra~GihlilatQ 572 (744)
T Consensus 362 isr~LK~lAkel~ipvi~LsQ 382 (472)
T PRK06904 362 ISRSLKALAKELKVPVVALSQ 382 (472)
T ss_pred HHHHHHHHHHHHCCCEEEECC
T ss_conf 999999999997998899732