HHsearch alignment for GI: 254780606 and conserved domain: PRK09112
>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=96.27 E-value=0.031 Score=34.28 Aligned_cols=165 Identities=18% Similarity=0.244 Sum_probs=73.8
Q ss_pred HHCCC-EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE--CCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 11484-699707875344799999999998568011079997--234210001257752000044441787689999998
Q gi|254780606|r 410 ANMPH-ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV--DPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVR 486 (744)
Q Consensus 410 ~~~PH-~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li--D~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~ 486 (744)
T Consensus 42 gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~r~i~~g~hpdl~~i~-------------r 108 (352)
T PRK09112 42 GRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLWRQIAQGAHPNLLHLT-------------R 108 (352)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE-------------C
T ss_conf 996524653589980899999999999866998666865567888787789999748999956553-------------4
Q ss_pred HHHHH-HHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEE
Q ss_conf 66769-99999807786799999886420267766654323386799984456876753103589999999996420135
Q gi|254780606|r 487 EMEER-YRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGI 565 (744)
Q Consensus 487 em~~r-~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gi 565 (744)
T Consensus 109 ~~d~k~~~~~~~I~vd~iR~l~~~~~~~---~~--------~~~~kv~Iid~ad~m~~~----aaNALLK~LEEP-p~~~ 172 (352)
T PRK09112 109 PFDEKTGKFKTAITVDEIRRVTHFLSQT---SG--------DGNWRIVIIDPADDMNRN----AANAILKTLEEP-PARA 172 (352)
T ss_pred CCCHHHHHHHCCCCHHHHHHHHHHHCCC---CC--------CCCEEEEEECCHHHHHHH----HHHHHHHHHHCC-CCCE
T ss_conf 3220214543357779999999984548---86--------688069998187874699----999999985348-9874
Q ss_pred EEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCC
Q ss_conf 89998516544441467885056305720368111003267
Q gi|254780606|r 566 HLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILG 606 (744)
Q Consensus 566 hlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~ 606 (744)
T Consensus 173 ~fiLit~~~~-~ll~-TI~SRC-q~~~f~pL~~~di~~~L~ 210 (352)
T PRK09112 173 LFILISHSSG-RLLP-TIRSRC-QPISLKPLDDDELKKALS 210 (352)
T ss_pred EEEEEECCHH-HCHH-HHHHHC-CCCCCCCCCHHHHHHHHH
T ss_conf 8998869977-7768-999743-321488939899999999