HHsearch alignment for GI: 254780606 and conserved domain: PRK09302

>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=93.18  E-value=0.66  Score=25.21  Aligned_cols=127  Identities=19%  Similarity=0.274  Sum_probs=67.2

Q ss_pred             HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC-----------CCEECCCCCCCCEEEEEEECHHHH
Q ss_conf             011484699707875344799999999998568011079997234-----------210001257752000044441787
Q gi|254780606|r  409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK-----------MLELSVYDGIPHLLTPVVTNPKKA  477 (744)
Q Consensus       409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k-----------~~~~~~~~~~ph~~~~v~~~~~~~  477 (744)
T Consensus       263 l~~GsstLi~Gp~GtGKTtla~qFl~~~a~~--GE~~l~~~FeE~~~~l~~~a~~~G~dl~~~~~~G~l~i-~~~~p~~~  339 (501)
T PRK09302        263 FFRGSIILVSGATGTGKTLLVSKFAEAACRR--GERCLLFAFEESRAQLVRNATSWGIDLEEMERKGLLKI-ICARPEST  339 (501)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEEEECCHHHHHHHHHHCCCCHHHHHHCCCEEE-EEECCCCC
T ss_conf             7589469998899988899999999999865--99089999967999999999973998488874894799-98370005


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHC-CHHHHHHHHH
Q ss_conf             6-8999999866769999998077867999998864202677666543233867999844568767531-0358999999
Q gi|254780606|r  478 V-MALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVA-GKEIEGAIQR  555 (744)
Q Consensus       478 ~-~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~-~~~~e~~~~~  555 (744)
T Consensus       340 ~~~e~~~~i~~~--------------v---~~~------------------~~-~rVvIDsls~~~~~~~~~~~r~~l~~  383 (501)
T PRK09302        340 GLEDHLQIIKRE--------------I---EEF------------------KP-SRVAVDPLSALARGGSLNEFRQFVIR  383 (501)
T ss_pred             CHHHHHHHHHHH--------------H---HHC------------------CC-CEEEECCHHHHHHHCCHHHHHHHHHH
T ss_conf             989999999999--------------9---972------------------99-89999580687652685999999999


Q ss_pred             HHHHHHCCEEEEEEEECCC
Q ss_conf             9996420135899985165
Q gi|254780606|r  556 LAQMARAAGIHLIMATQRP  574 (744)
Q Consensus       556 la~~~ra~GihlilatQrp  574 (744)
T Consensus       384 L~~~Lk~~gvT~l~t~~~~  402 (501)
T PRK09302        384 LTDYLKQEEITGLFTNLTP  402 (501)
T ss_pred             HHHHHHHCCCEEEEEEECC
T ss_conf             9999976897899976123