HHsearch alignment for GI: 254780606 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=93.18 E-value=0.66 Score=25.21 Aligned_cols=127 Identities=19% Similarity=0.274 Sum_probs=67.2
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC-----------CCEECCCCCCCCEEEEEEECHHHH
Q ss_conf 011484699707875344799999999998568011079997234-----------210001257752000044441787
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK-----------MLELSVYDGIPHLLTPVVTNPKKA 477 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k-----------~~~~~~~~~~ph~~~~v~~~~~~~ 477 (744)
T Consensus 263 l~~GsstLi~Gp~GtGKTtla~qFl~~~a~~--GE~~l~~~FeE~~~~l~~~a~~~G~dl~~~~~~G~l~i-~~~~p~~~ 339 (501)
T PRK09302 263 FFRGSIILVSGATGTGKTLLVSKFAEAACRR--GERCLLFAFEESRAQLVRNATSWGIDLEEMERKGLLKI-ICARPEST 339 (501)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEEEECCHHHHHHHHHHCCCCHHHHHHCCCEEE-EEECCCCC
T ss_conf 7589469998899988899999999999865--99089999967999999999973998488874894799-98370005
Q ss_pred H-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHC-CHHHHHHHHH
Q ss_conf 6-8999999866769999998077867999998864202677666543233867999844568767531-0358999999
Q gi|254780606|r 478 V-MALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVA-GKEIEGAIQR 555 (744)
Q Consensus 478 ~-~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~-~~~~e~~~~~ 555 (744)
T Consensus 340 ~~~e~~~~i~~~--------------v---~~~------------------~~-~rVvIDsls~~~~~~~~~~~r~~l~~ 383 (501)
T PRK09302 340 GLEDHLQIIKRE--------------I---EEF------------------KP-SRVAVDPLSALARGGSLNEFRQFVIR 383 (501)
T ss_pred CHHHHHHHHHHH--------------H---HHC------------------CC-CEEEECCHHHHHHHCCHHHHHHHHHH
T ss_conf 989999999999--------------9---972------------------99-89999580687652685999999999
Q ss_pred HHHHHHCCEEEEEEEECCC
Q ss_conf 9996420135899985165
Q gi|254780606|r 556 LAQMARAAGIHLIMATQRP 574 (744)
Q Consensus 556 la~~~ra~GihlilatQrp 574 (744)
T Consensus 384 L~~~Lk~~gvT~l~t~~~~ 402 (501)
T PRK09302 384 LTDYLKQEEITGLFTNLTP 402 (501)
T ss_pred HHHHHHHCCCEEEEEEECC
T ss_conf 9999976897899976123