HHsearch alignment for GI: 254780606 and conserved domain: PRK09376
>PRK09376 rho transcription termination factor Rho; Provisional.
Probab=90.98 E-value=1.2 Score=23.49 Aligned_cols=184 Identities=23% Similarity=0.297 Sum_probs=99.8
Q ss_pred CCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEE-C----HHHHHHHH
Q ss_conf 120114846997078753447999999999985680110799972342100012577520000444-4----17876899
Q gi|254780606|r 407 ADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVT-N----PKKAVMAL 481 (744)
Q Consensus 407 ~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~-~----~~~~~~~l 481 (744)
T Consensus 164 aPIGkGQRgLIVAPPkaGKT~lLq~IA~aI~~N~Pe~~liVLLIDERPEEVTdm~r~v--~~eV~aStfD~~~~~H~~-v 240 (416)
T PRK09376 164 APIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSV--KGEVVASTFDEPAERHVQ-V 240 (416)
T ss_pred CCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHC--CEEEEEECCCCCHHHHHH-H
T ss_conf 5413585003756998754799999999998569971999999048934777877504--618999779998789999-9
Q ss_pred HHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 9999866-769999998077867999998864202677666543233867999844568767531035899999999964
Q gi|254780606|r 482 KWAVREM-EERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMA 560 (744)
Q Consensus 482 ~~~~~em-~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ 560 (744)
T Consensus 241 ----ae~~lerAkRlvE~G-----------------------~------DVvillD------------------SiTRLa 269 (416)
T PRK09376 241 ----AEMVIEKAKRLVEHG-----------------------K------DVVILLD------------------SITRLA 269 (416)
T ss_pred ----HHHHHHHHHHHHHCC-----------------------C------CEEEEEC------------------CHHHHH
T ss_conf ----999999999998769-----------------------9------7899973------------------157888
Q ss_pred HCCEEEEEEEECCCCCCCCHHHHHHCCCC---EE--EEECCCHHHCCHHCCC----CC-------HHHHCCCCCE-EEEC
Q ss_conf 20135899985165444414678850563---05--7203681110032676----31-------6885689846-8646
Q gi|254780606|r 561 RAAGIHLIMATQRPSVDVITGTIKANFPI---RI--SFQVTSKIDSRTILGE----HG-------AEQLLGRGDM-LYMS 623 (744)
Q Consensus 561 ra~GihlilatQrp~~~vi~~~ik~n~~~---ri--~~~v~~~~dsr~il~~----~g-------ae~l~g~gd~-l~~~ 623 (744)
T Consensus 270 RAyN~-----~~~~sGr~lsGG~D~~Al~~PKrfFGAARnie~GGSLTIiaTaLveTgSrMDdvIfeEfkgTgNmEl~Ld 344 (416)
T PRK09376 270 RAYNT-----VVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLD 344 (416)
T ss_pred HHHHC-----CCCCCCCCCCCCCCHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEC
T ss_conf 88623-----4699877544765777760556764100267767517787777752686253899998515784599987
Q ss_pred CC-C-C-E----------EEEEECCCCHHHHHHHHHHHH
Q ss_conf 89-8-4-3----------899934389889999999998
Q gi|254780606|r 624 GG-G-R-I----------QRVHGPLVSDIEIEKVVQHLK 649 (744)
Q Consensus 624 ~~-~-~-~----------~r~~~~~~~~~~~~~~~~~~~ 649 (744)
T Consensus 345 r~la~~RifPAIdi~~SgTRkEelLl~~~e~~~~~~lRr 383 (416)
T PRK09376 345 RKLAEKRIFPAIDINRSGTRKEELLLSPEELQKVWILRK 383 (416)
T ss_pred HHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHH
T ss_conf 667757886401333577725765379999999999999