HHsearch alignment for GI: 254780606 and conserved domain: PRK09473
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional.
Probab=95.19 E-value=0.24 Score=28.18 Aligned_cols=183 Identities=18% Similarity=0.209 Sum_probs=80.8
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCC--HHHEEEEEECCC---CCEEC---------CCCCCCCEEEEE
Q ss_conf 2112011484699707875344799999999998568--011079997234---21000---------125775200004
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLR--PDECRMIMVDPK---MLELS---------VYDGIPHLLTPV 470 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~--p~~~~~~liD~k---~~~~~---------~~~~~ph~~~~v 470 (744)
T Consensus 35 Vsf~i~~GEilgivGeSGsGKSTl~~~i-~gll~~~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~I~~vfQdp~~sLnP~ 113 (330)
T PRK09473 35 LNFSLRAGETLGIVGESGSGKSQTAFAL-MGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPY 113 (330)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHH-HCCCCCCCCEEEEEEECCEECCCCCHHHHHHHHCCCEEEEEECCCHHCCCC
T ss_conf 4768889989999868987799999999-768888883358999999986658999999863066799960750113841
Q ss_pred EECHHHHHHHHHHH----H-HHHHHHHHHHHHCCCCCHHH------------HHHHHHHHHCCCCCCCCCCCCCCCEEEE
Q ss_conf 44417876899999----9-86676999999807786799------------9998864202677666543233867999
Q gi|254780606|r 471 VTNPKKAVMALKWA----V-REMEERYRKMSHLSVRNIKS------------YNERISTMYGEKPQGCGDDMRPMPYIVI 533 (744)
Q Consensus 471 ~~~~~~~~~~l~~~----~-~em~~r~~~~~~~~~~~i~~------------~n~~~~~~~~~~~~~~~~~~~~~p~ivv 533 (744)
T Consensus 114 ~~i~~~l~e~l~~~~~~~~~~~~~~~~~lL~~v~l~~~~~~l~~yP~eLSGGq~QRV~IArA---------L~~~P~-lL 183 (330)
T PRK09473 114 MRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMA---------LLCRPK-LL 183 (330)
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHCCHHHHHHHHHHHH---------HHCCCC-EE
T ss_conf 04566555789885389989999999988887607217888734815339889999999999---------970999-99
Q ss_pred EHHHHHH-HHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEE----ECCCHHHCCHHCCCC
Q ss_conf 8445687-67531035899999999964201358999851654444146788505630572----036811100326763
Q gi|254780606|r 534 IVDEMAD-LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISF----QVTSKIDSRTILGEH 608 (744)
Q Consensus 534 viDE~a~-l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~----~v~~~~dsr~il~~~ 608 (744)
T Consensus 184 I~DEPTsaLDv~~q~~Il~---ll~~l~~e~g~til~ITHDl~--~----v-~~~~DrI~VMy~G~iVE~G~~~~i~~~P 253 (330)
T PRK09473 184 IADEPTTALDVTVQAQIMT---LLNELKREFNTAIIMITHDLG--V----V-AGICDKVLVMYAGRTMEYGNARDVFYQP 253 (330)
T ss_pred EECCCCCCCCHHHHHHHHH---HHHHHHHHCCCCEEEECCCHH--H----H-HHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 9738755479999999999---999999974994799828899--9----9-9869989999898899978899997379