HHsearch alignment for GI: 254780606 and conserved domain: PRK12402

>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=97.31  E-value=0.001  Score=44.52  Aligned_cols=83  Identities=22%  Similarity=0.473  Sum_probs=52.4

Q ss_pred             CEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHC---
Q ss_conf             67999844568767531035899999999964201358999851654444146788505630572036811100326---
Q gi|254780606|r  529 PYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTIL---  605 (744)
Q Consensus       529 p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il---  605 (744)
T Consensus       125 ~~KiiIlDEad~lt----~~Aq~aLlk~lEe~-~~~~~fIl~t~~~~-~ii~t-I~SRC-~~i~F~~~s~~~i~~~L~~I  196 (337)
T PRK12402        125 DYKLILFDNAEALR----EDAQQALRRIMERY-SETCRFIFSTTQPS-KLIPP-IRSRC-LPLFFRPVPDDEIRSVLESI  196 (337)
T ss_pred             CEEEEEEECCCCCC----HHHHHHHHHHHHCC-CCCEEEEEECCCCC-CCCHH-HHHHC-EEEECCCCCHHHHHHHHHHH
T ss_conf             80499970713179----99999999887408-87669987238644-47524-77624-45435898999999999999


Q ss_pred             --------CCCCHHHH--CCCCCE
Q ss_conf             --------76316885--689846
Q gi|254780606|r  606 --------GEHGAEQL--LGRGDM  619 (744)
Q Consensus       606 --------~~~gae~l--~g~gd~  619 (744)
T Consensus       197 ~~~E~i~~~~~~l~~ia~~s~Gdl  220 (337)
T PRK12402        197 AAAEGVEISDDGLDLIAYYAEGDL  220 (337)
T ss_pred             HHHCCCCCCHHHHHHHHHHCCCCH
T ss_conf             998499989999999999869989