HHsearch alignment for GI: 254780606 and conserved domain: PRK12402
>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=97.31 E-value=0.001 Score=44.52 Aligned_cols=83 Identities=22% Similarity=0.473 Sum_probs=52.4
Q ss_pred CEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHC---
Q ss_conf 67999844568767531035899999999964201358999851654444146788505630572036811100326---
Q gi|254780606|r 529 PYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTIL--- 605 (744)
Q Consensus 529 p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il--- 605 (744)
T Consensus 125 ~~KiiIlDEad~lt----~~Aq~aLlk~lEe~-~~~~~fIl~t~~~~-~ii~t-I~SRC-~~i~F~~~s~~~i~~~L~~I 196 (337)
T PRK12402 125 DYKLILFDNAEALR----EDAQQALRRIMERY-SETCRFIFSTTQPS-KLIPP-IRSRC-LPLFFRPVPDDEIRSVLESI 196 (337)
T ss_pred CEEEEEEECCCCCC----HHHHHHHHHHHHCC-CCCEEEEEECCCCC-CCCHH-HHHHC-EEEECCCCCHHHHHHHHHHH
T ss_conf 80499970713179----99999999887408-87669987238644-47524-77624-45435898999999999999
Q ss_pred --------CCCCHHHH--CCCCCE
Q ss_conf --------76316885--689846
Q gi|254780606|r 606 --------GEHGAEQL--LGRGDM 619 (744)
Q Consensus 606 --------~~~gae~l--~g~gd~ 619 (744)
T Consensus 197 ~~~E~i~~~~~~l~~ia~~s~Gdl 220 (337)
T PRK12402 197 AAAEGVEISDDGLDLIAYYAEGDL 220 (337)
T ss_pred HHHCCCCCCHHHHHHHHHHCCCCH
T ss_conf 998499989999999999869989