HHsearch alignment for GI: 254780606 and conserved domain: PRK12608
>PRK12608 transcription termination factor Rho; Provisional.
Probab=93.79 E-value=0.53 Score=25.88 Aligned_cols=54 Identities=9% Similarity=0.168 Sum_probs=41.9
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCC
Q ss_conf 011484699707875344799999999998568011079997234210001257
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDG 462 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~ 462 (744)
T Consensus 129 IGkGQRgLIVAPPkaGKT~LLq~IA~aI~~NhPev~livLLIDERPEEVTdm~r 182 (379)
T PRK12608 129 IGKGQRGLIVAPPRAGKTILLQQIAQAVAANHPDIHLMVLLIDERPEEVTDMKR 182 (379)
T ss_pred CCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
T ss_conf 345740127458986578999999999985799848999981689358888886