HHsearch alignment for GI: 254780606 and conserved domain: PRK13830
>PRK13830 conjugal transfer protein TrbE; Provisional.
Probab=99.26 E-value=5.1e-08 Score=74.00 Aligned_cols=338 Identities=17% Similarity=0.231 Sum_probs=170.6
Q ss_pred HHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE------------EECCCCE
Q ss_conf 9999998740355138986764892589997548886399998599999987147763277------------5189834
Q gi|254780606|r 294 AGSLETILEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLSARVA------------VIPKRNA 361 (744)
Q Consensus 294 ~~~l~~~l~~~~~~~~~~~~~~gp~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~------------~~pg~~~ 361 (744)
T Consensus 324 ~~e~~~Al~~l~sg~~~~G-~~~~tv~v~------~~~~~~l~~~~~~v~~~l~~~Gf~~~~E~~n~~~Af~aqLPGn~~ 396 (818)
T PRK13830 324 VAETEDAIAQASSQLVAYG-YYTPVIVLF------DEDRERLQEKAEAIRRLIQAEGFGARIETLNATDAFLGSLPGNWY 396 (818)
T ss_pred HHHHHHHHHHHHCCCEEEE-EEEEEEEEE------CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCCC
T ss_conf 9989999988517977668-888899996------799999999999999999738946898020219999985988765
Q ss_pred EEEECCCCCCCEEEHHHHHCCHHHCC---C----CC----CEEEEEEECCCC-CEEECCHH--HCCCEEEEECCCCCHHH
Q ss_conf 54426888887076587512812114---6----78----368984205788-73211201--14846997078753447
Q gi|254780606|r 362 IGIELPNETRETVYLRQIIESRSFSH---S----KA----NLALCLGKTISG-ESVIADLA--NMPHILVAGTTGSGKSV 427 (744)
Q Consensus 362 ~~~~~p~~~~~~v~~~~~~~~~~~~~---~----~~----~l~~~~g~~~~g-~~~~~dl~--~~PH~lvaG~TgsGKS~ 427 (744)
T Consensus 397 -----~~~R~~~isS~NfA~l~plh~~~~G~~~~~~~~~~~~~p~l~~t~sG~TPf~fN~H~~dvGHtlIiGpTGsGKTv 471 (818)
T PRK13830 397 -----CNIREPLINTRNLADLIPLNSVWSGNPVAPCPFYPPNSPPLMQVASGSTPFRLNLHVDDVGHTLIFGPTGSGKST 471 (818)
T ss_pred -----CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCEEEEECCCCCCHHH
T ss_conf -----665655534677865541326678988898877788886148614899753562788986505898999998899
Q ss_pred HHHHHHHHHHHHCCHHHEEEEEECCCCC-EEC------CCCCC---------CCEEEEE--EECHHHHHHHHHHHHHH--
Q ss_conf 9999999999856801107999723421-000------12577---------5200004--44417876899999986--
Q gi|254780606|r 428 AINTMIMSLLYRLRPDECRMIMVDPKML-ELS------VYDGI---------PHLLTPV--VTNPKKAVMALKWAVRE-- 487 (744)
Q Consensus 428 ~l~~~i~sl~~~~~p~~~~~~liD~k~~-~~~------~~~~~---------ph~~~~v--~~~~~~~~~~l~~~~~e-- 487 (744)
T Consensus 472 ll~fl~aq-~~ky~~--~~vf~FDKd~s~~i~~~a~GG~y~~l~~~~~~~~~~~~f~Pl~~~~t~~~~~fl~~wl~~l~~ 548 (818)
T PRK13830 472 LLALIAAQ-FRRYAG--AQIFAFDKGRSMLPLTLAAGGDHYEIGGDDAEEGRALAFCPLSELSTDADRAWAAEWIETLVA 548 (818)
T ss_pred HHHHHHHH-HHHCCC--CEEEEECCCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999-864279--838997488768999998099258733677778887787988889985777999999999998
Q ss_pred -------------HHHHHHHHHHCCCCCHHHHHHH---------HHHHHCCCCC----CCCCC-----------------
Q ss_conf -------------6769999998077867999998---------8642026776----66543-----------------
Q gi|254780606|r 488 -------------MEERYRKMSHLSVRNIKSYNER---------ISTMYGEKPQ----GCGDD----------------- 524 (744)
Q Consensus 488 -------------m~~r~~~~~~~~~~~i~~~n~~---------~~~~~~~~~~----~~~~~----------------- 524 (744)
T Consensus 549 ~~g~~~tp~~~~~i~~a~~~~~~~~~r~l~~~~~~~~~~~l~~~L~~w~~~G~~g~~fD~~~D~l~~~~~~~fe~~~ll~ 628 (818)
T PRK13830 549 LQGVTITPDHRNAISRQIGLMASARGRSLSDFVSGVQMREIKDALHHYTVDGPMGQLLDAEEDGLTLGAFQTFEIEQLMN 628 (818)
T ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 47987899999999999985103655809888643575789999998706997250447876675756641785530044
Q ss_pred --------------------CCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCC----H
Q ss_conf --------------------2338679998445687675310358999999999642013589998516544441----4
Q gi|254780606|r 525 --------------------MRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVI----T 580 (744)
Q Consensus 525 --------------------~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi----~ 580 (744)
T Consensus 629 ~~~~~~~Pvl~Ylf~rie~~lDGrp-~li~lDE~W~~L-~~-~~F~~~i~~wlkt~RK~N~~vv~aTQS~~-d~~~S~I~ 704 (818)
T PRK13830 629 MGERNLVPVLTYLFRRIEKRLTGAP-SLIILDEAWLML-GH-PVFRDKIREWLKVLRKANCAVVLATQSIS-DAERSGII 704 (818)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCC-EEEEHHHHHHHH-CC-HHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHCCCHH
T ss_conf 7742079999999999997507991-799767648761-89-89999999999999863977999778889-98659648
Q ss_pred HHHHHCCCCEEEEECCCHHH--CCHH---CCCCCHH-----HHCCCCCEEEECC-CCCEEEEE-----ECCC--CHH-HH
Q ss_conf 67885056305720368111--0032---6763168-----8568984686468-98438999-----3438--988-99
Q gi|254780606|r 581 GTIKANFPIRISFQVTSKID--SRTI---LGEHGAE-----QLLGRGDMLYMSG-GGRIQRVH-----GPLV--SDI-EI 641 (744)
Q Consensus 581 ~~ik~n~~~ri~~~v~~~~d--sr~i---l~~~gae-----~l~g~gd~l~~~~-~~~~~r~~-----~~~~--~~~-~~ 641 (744)
T Consensus 705 ~~iveq~~T~IfLPNp~A~~~~~~~~y~~fGL~~~eieiI~~~~pkR~y~~~~~~gsrl~~L~L~~~~la~~~~Sg~~~~ 784 (818)
T PRK13830 705 DVLKESCPTKICLPNGAAREPGTREFYERIGFNERQIEIVATAIPKREYYVASPEGRRLFDMSLGPVALSFVGASGKEDL 784 (818)
T ss_pred HHHHHHCCEEEECCCCHHCCCHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEECCCCCEEEECCCCCHHEEEEECCCHHHH
T ss_conf 99998688669866801055118889987599999999996258665189983899889974798401000114888899
Q ss_pred HHHHHHHHHC
Q ss_conf 9999999840
Q gi|254780606|r 642 EKVVQHLKKQ 651 (744)
Q Consensus 642 ~~~~~~~~~~ 651 (744)
T Consensus 785 ~~~~-~l~~~ 793 (818)
T PRK13830 785 KRIR-ALKSE 793 (818)
T ss_pred HHHH-HHHHH
T ss_conf 9999-99998