HHsearch alignment for GI: 254780606 and conserved domain: PRK13850
>PRK13850 type IV secretion system protein VirD4; Provisional.
Probab=91.44 E-value=0.96 Score=24.10 Aligned_cols=112 Identities=16% Similarity=0.176 Sum_probs=73.1
Q ss_pred EEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCC-CCCH-----HHHHHCCCCEEEEECCCHHHCCH
Q ss_conf 79998445687675310358999999999642013589998516544-4414-----67885056305720368111003
Q gi|254780606|r 530 YIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSV-DVIT-----GTIKANFPIRISFQVTSKIDSRT 603 (744)
Q Consensus 530 ~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~-~vi~-----~~ik~n~~~ri~~~v~~~~dsr~ 603 (744)
T Consensus 390 ~vLlLLDEF~aLGkL--~iie~Ala~----mAGYGiRl~lI~Qsl~QL~~~YGe~~a~tilsN~~vrI~fapnD~eTAk~ 463 (670)
T PRK13850 390 EVLFLLDEFKHLGKL--EAIETAITT----IAGYKGRFMFIIQSLSALTGTYDEAGKQNFLSNTGVQVFMATADDETPTY 463 (670)
T ss_pred EEEEEECCCCCCCCH--HHHHHHHHH----HCCCCCEEEEEEECHHHHHHHHCHHHHHHHHHCCCEEEEECCCCHHHHHH
T ss_conf 079986064105874--899999998----62568789999847999998858415678872572699965797766999
Q ss_pred HCCCCCH----------------------------------HHHCCCCCEEEECCCCCEEEEEEC-CCCHHHHHHHHHH
Q ss_conf 2676316----------------------------------885689846864689843899934-3898899999999
Q gi|254780606|r 604 ILGEHGA----------------------------------EQLLGRGDMLYMSGGGRIQRVHGP-LVSDIEIEKVVQH 647 (744)
Q Consensus 604 il~~~ga----------------------------------e~l~g~gd~l~~~~~~~~~r~~~~-~~~~~~~~~~~~~ 647 (744)
T Consensus 464 iS~~LG~~T~~~~s~S~~~~r~~~~s~s~seq~RpLLtP~Evr~Lp~d~eIvlv~G~~PI~akKirYY~D~~fk~i~~~ 542 (670)
T PRK13850 464 ISKAIGDYTFKARSTSYSQARMFDHNIQISDQGAPLLRPEQVRLLDDDYEIVLIKGQPPLKLRKVRYYSDRELKRIFEA 542 (670)
T ss_pred HHHHHCHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCEEECEEEECCCHHHHHHHHH
T ss_conf 9998482134533110367877788744002667689978995399876699806999703333154158888888874