HHsearch alignment for GI: 254780606 and conserved domain: PRK13851
>PRK13851 type IV secretion system protein VirB11; Provisional.
Probab=97.06 E-value=0.00048 Score=46.72 Aligned_cols=35 Identities=34% Similarity=0.631 Sum_probs=28.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC
Q ss_conf 4846997078753447999999999985680110799972
Q gi|254780606|r 412 MPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD 451 (744)
Q Consensus 412 ~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD 451 (744)
T Consensus 162 r~NIlIsGgTGSGKTTllnALl~~I-----P~~eRIvtIE 196 (343)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAI-----PPQERLITIE 196 (343)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCC-----CCCCCEEEEC
T ss_conf 9889998889861999999999628-----9655279961