HHsearch alignment for GI: 254780606 and conserved domain: PRK13897
>PRK13897 type IV secretion system component VirD4; Provisional.
Probab=96.03 E-value=0.0026 Score=41.72 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=41.7
Q ss_pred EEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC--CCCC----HHHHHHCCCCEEEEECCCHHHCC
Q ss_conf 999844568767531035899999999964201358999851654--4441----46788505630572036811100
Q gi|254780606|r 531 IVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS--VDVI----TGTIKANFPIRISFQVTSKIDSR 602 (744)
Q Consensus 531 ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~--~~vi----~~~ik~n~~~ri~~~v~~~~dsr 602 (744)
T Consensus 407 VLfLLDEFanLGk-----Ip-~fekaiA~mrGYGIrl~lIiQslsQLk~~YG~~~a~tIl~Nc~~~I~f~~nD~eTAk 478 (628)
T PRK13897 407 VLFLMDEFPTLGK-----ME-QFKTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETAN 478 (628)
T ss_pred EEEEECCCCCCCC-----HH-HHHHHHHHHHCCCCEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEECCCCHHHHH
T ss_conf 8998510021487-----48-899999987036878999997699999885734477898558637986689753499