HHsearch alignment for GI: 254780606 and conserved domain: TIGR00174
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=94.10 E-value=0.14 Score=29.78 Aligned_cols=68 Identities=26% Similarity=0.366 Sum_probs=39.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC----CCCCEE-------CCCCCCCCEEEEEEECHH--HHHHHH
Q ss_conf 6997078753447999999999985680110799972----342100-------012577520000444417--876899
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD----PKMLEL-------SVYDGIPHLLTPVVTNPK--KAVMAL 481 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD----~k~~~~-------~~~~~~ph~~~~v~~~~~--~~~~~l 481 (744)
T Consensus 2 i~i~GpTAvGKs~L----~i~La~~---lnaEiI~~DS~qiYK~~dIgtaKp~~~e~~~ipH~l~Dildp~e~y~~~~F~ 74 (307)
T TIGR00174 2 IVIMGPTAVGKSNL----AIQLAKK---LNAEIISVDSMQIYKGMDIGTAKPSLQERKGIPHHLIDILDPSESYSAADFQ 74 (307)
T ss_pred EEEEECCCCCHHHH----HHHHHHH---CCEEEEECCCHHHHCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCHHHH
T ss_conf 67740885547789----9998876---8957874350232237875357889687534981585134712003708899
Q ss_pred HHHHHHHH
Q ss_conf 99998667
Q gi|254780606|r 482 KWAVREME 489 (744)
Q Consensus 482 ~~~~~em~ 489 (744)
T Consensus 75 ~~~~~~~~ 82 (307)
T TIGR00174 75 TQALNAIA 82 (307)
T ss_pred HHHHHHHH
T ss_conf 99999999