HHsearch alignment for GI: 254780606 and conserved domain: TIGR00618
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=94.97 E-value=0.028 Score=34.60 Aligned_cols=42 Identities=21% Similarity=0.413 Sum_probs=29.8
Q ss_pred ECCCCCEEECCHHH-----CCCEEEEECCCCCHHHHHHHHHHHHHHHC
Q ss_conf 05788732112011-----48469970787534479999999999856
Q gi|254780606|r 398 KTISGESVIADLAN-----MPHILVAGTTGSGKSVAINTMIMSLLYRL 440 (744)
Q Consensus 398 ~~~~g~~~~~dl~~-----~PH~lvaG~TgsGKS~~l~~~i~sl~~~~ 440 (744)
T Consensus 11 ~~~y~~~~~~dfT~~~fasl~~f~i~G~tGAGKtsLldAI~yAL-YGk 57 (1063)
T TIGR00618 11 FTSYKGESVIDFTALGFASLKLFVICGKTGAGKTSLLDAITYAL-YGK 57 (1063)
T ss_pred CCCCCCCCEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH-CCC
T ss_conf 35345761010278872125736777889983545999999987-288