HHsearch alignment for GI: 254780606 and conserved domain: TIGR01074
>TIGR01074 rep ATP-dependent DNA helicase Rep; InterPro: IPR005752 RepA hexameric DNA helicase contain ATP-binding domains similar to those seen in monomeric helicases but which are arranged in a ring. There is compelling evidence to suggest that a single ssDNA molecule passes through the centre of the hexameric ring. Activity of the enzyme is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilizing the duplex and separating the two strands in an active process ; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=93.56 E-value=0.16 Score=29.46 Aligned_cols=66 Identities=24% Similarity=0.386 Sum_probs=43.3
Q ss_pred ECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCE-----EEE-CCCCCEEEEEECCCCHHHHHHH
Q ss_conf 5165444414678850563057203681110032676316885689846-----864-6898438999343898899999
Q gi|254780606|r 571 TQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDM-----LYM-SGGGRIQRVHGPLVSDIEIEKV 644 (744)
Q Consensus 571 tQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~-----l~~-~~~~~~~r~~~~~~~~~~~~~~ 644 (744)
T Consensus 264 ~DfP~LKvI--KLEQNY----------RS~~R-IL--kaAN~LI~NNpH~F~K~LfS~l~~Ge~~kVi~~~NE~hEAEri 328 (677)
T TIGR01074 264 EDFPQLKVI--KLEQNY----------RSTSR-IL--KAANILIANNPHVFEKKLFSELGEGEKIKVIECRNEEHEAERI 328 (677)
T ss_pred HCCCCCEEE--EECCCC----------CCHHH-HH--HHHHHHHHCCCCCCCCCHHHHHCCCCEEEEEECCCCHHHHHHH
T ss_conf 158644165--000066----------66466-99--9976776227420000000100169817888517863168999
Q ss_pred HHHHHHC
Q ss_conf 9999840
Q gi|254780606|r 645 VQHLKKQ 651 (744)
Q Consensus 645 ~~~~~~~ 651 (744)
T Consensus 329 ~~ei~~~ 335 (677)
T TIGR01074 329 AGEIIAH 335 (677)
T ss_pred HHHHHHH
T ss_conf 9999999