HHsearch alignment for GI: 254780606 and conserved domain: TIGR01420

>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=97.86  E-value=1.7e-05  Score=56.71  Aligned_cols=190  Identities=27%  Similarity=0.356  Sum_probs=100.5

Q ss_pred             EEECCHHHCC--CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE-CCCCCEECCCCCCCCEEEEEEECHHHHHHH
Q ss_conf             3211201148--4699707875344799999999998568011079997-234210001257752000044441787689
Q gi|254780606|r  404 SVIADLANMP--HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV-DPKMLELSVYDGIPHLLTPVVTNPKKAVMA  480 (744)
Q Consensus       404 ~~~~dl~~~P--H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li-D~k~~~~~~~~~~ph~~~~v~~~~~~~~~~  480 (744)
T Consensus       117 ~v~~~~a~~~~GLiLVTGPTGSGKSTTlAsmID---yIN~~~~~HIiTIEDPIEyvh~~~~sli~QR-EvG~DT~sF~~A  192 (350)
T TIGR01420       117 PVLRELAERPRGLILVTGPTGSGKSTTLASMID---YINKNKAGHIITIEDPIEYVHKNKRSLINQR-EVGLDTLSFANA  192 (350)
T ss_pred             HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH---HHHCCCCCCCEEEECCEEEEECCCEEEEECC-CCCCCHHHHHHH
T ss_conf             899999836699389876889867899999997---8740388882563177314104770245436-246754579999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             99999866769999998077867999998864202677666543233867999844568767531035899999999964
Q gi|254780606|r  481 LKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMA  560 (744)
Q Consensus       481 l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~  560 (744)
T Consensus       193 LraAL----------------------------ReDP-------------DvILiGE~RD~-----ET~-----~~AL~A  221 (350)
T TIGR01420       193 LRAAL----------------------------REDP-------------DVILIGEMRDL-----ETV-----ELALTA  221 (350)
T ss_pred             HHHHH----------------------------CCCC-------------CEEEEECCCCH-----HHH-----HHHHHH
T ss_conf             76841----------------------------0289-------------88998255627-----899-----999987


Q ss_pred             HCCEEEEEEEECCCC--CCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCC-CCCEEEE-CCCCCEEEEEECCC
Q ss_conf             201358999851654--4441467885056305720368111003267631688568-9846864-68984389993438
Q gi|254780606|r  561 RAAGIHLIMATQRPS--VDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLG-RGDMLYM-SGGGRIQRVHGPLV  636 (744)
Q Consensus       561 ra~GihlilatQrp~--~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g-~gd~l~~-~~~~~~~r~~~~~~  636 (744)
T Consensus       222 AETG-HLV~gTLHTnsA~~ti~R-Iid~FP~------~~~~qiR----~~La~~L~Av~sQrL~p~~~G~GRv~~~Eil~  289 (350)
T TIGR01420       222 AETG-HLVFGTLHTNSAAKTIER-IIDVFPA------EEQEQIR----TQLAESLVAVISQRLLPKKNGGGRVLAVEILI  289 (350)
T ss_pred             HHHC-CHHHHHHHHHHHHHHHHH-HHCCCCH------HHHHHHH----HHHHHHHHHHHCCCCEEECCCCCEEEEEEEEC
T ss_conf             4213-156766664238887677-7425977------5668999----99987678770005422338962588887521


Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             988999999999840887531111245
Q gi|254780606|r  637 SDIEIEKVVQHLKKQGCPEYLNTVTTD  663 (744)
Q Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  663 (744)
T Consensus       290 ~Tpav~---~lIre~gk~~qi~~~i~~  313 (350)
T TIGR01420       290 NTPAVR---NLIREEGKTHQIKSVIQT  313 (350)
T ss_pred             CCHHHH---HHHCCCCCHHHHHHHHHH
T ss_conf             587899---960287887689999871