HHsearch alignment for GI: 254780606 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=97.86 E-value=1.7e-05 Score=56.71 Aligned_cols=190 Identities=27% Similarity=0.356 Sum_probs=100.5
Q ss_pred EEECCHHHCC--CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE-CCCCCEECCCCCCCCEEEEEEECHHHHHHH
Q ss_conf 3211201148--4699707875344799999999998568011079997-234210001257752000044441787689
Q gi|254780606|r 404 SVIADLANMP--HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV-DPKMLELSVYDGIPHLLTPVVTNPKKAVMA 480 (744)
Q Consensus 404 ~~~~dl~~~P--H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li-D~k~~~~~~~~~~ph~~~~v~~~~~~~~~~ 480 (744)
T Consensus 117 ~v~~~~a~~~~GLiLVTGPTGSGKSTTlAsmID---yIN~~~~~HIiTIEDPIEyvh~~~~sli~QR-EvG~DT~sF~~A 192 (350)
T TIGR01420 117 PVLRELAERPRGLILVTGPTGSGKSTTLASMID---YINKNKAGHIITIEDPIEYVHKNKRSLINQR-EVGLDTLSFANA 192 (350)
T ss_pred HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH---HHHCCCCCCCEEEECCEEEEECCCEEEEECC-CCCCCHHHHHHH
T ss_conf 899999836699389876889867899999997---8740388882563177314104770245436-246754579999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 99999866769999998077867999998864202677666543233867999844568767531035899999999964
Q gi|254780606|r 481 LKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMA 560 (744)
Q Consensus 481 l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ 560 (744)
T Consensus 193 LraAL----------------------------ReDP-------------DvILiGE~RD~-----ET~-----~~AL~A 221 (350)
T TIGR01420 193 LRAAL----------------------------REDP-------------DVILIGEMRDL-----ETV-----ELALTA 221 (350)
T ss_pred HHHHH----------------------------CCCC-------------CEEEEECCCCH-----HHH-----HHHHHH
T ss_conf 76841----------------------------0289-------------88998255627-----899-----999987
Q ss_pred HCCEEEEEEEECCCC--CCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCC-CCCEEEE-CCCCCEEEEEECCC
Q ss_conf 201358999851654--4441467885056305720368111003267631688568-9846864-68984389993438
Q gi|254780606|r 561 RAAGIHLIMATQRPS--VDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLG-RGDMLYM-SGGGRIQRVHGPLV 636 (744)
Q Consensus 561 ra~GihlilatQrp~--~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g-~gd~l~~-~~~~~~~r~~~~~~ 636 (744)
T Consensus 222 AETG-HLV~gTLHTnsA~~ti~R-Iid~FP~------~~~~qiR----~~La~~L~Av~sQrL~p~~~G~GRv~~~Eil~ 289 (350)
T TIGR01420 222 AETG-HLVFGTLHTNSAAKTIER-IIDVFPA------EEQEQIR----TQLAESLVAVISQRLLPKKNGGGRVLAVEILI 289 (350)
T ss_pred HHHC-CHHHHHHHHHHHHHHHHH-HHCCCCH------HHHHHHH----HHHHHHHHHHHCCCCEEECCCCCEEEEEEEEC
T ss_conf 4213-156766664238887677-7425977------5668999----99987678770005422338962588887521
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 988999999999840887531111245
Q gi|254780606|r 637 SDIEIEKVVQHLKKQGCPEYLNTVTTD 663 (744)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (744)
T Consensus 290 ~Tpav~---~lIre~gk~~qi~~~i~~ 313 (350)
T TIGR01420 290 NTPAVR---NLIREEGKTHQIKSVIQT 313 (350)
T ss_pred CCHHHH---HHHCCCCCHHHHHHHHHH
T ss_conf 587899---960287887689999871