HHsearch alignment for GI: 254780606 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=96.15 E-value=0.0093 Score=37.91 Aligned_cols=150 Identities=24% Similarity=0.320 Sum_probs=84.4
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCC----CCCC---EEE-EEE---------EC
Q ss_conf 148469970787534479999999999856801107999723421000125----7752---000-044---------44
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYD----GIPH---LLT-PVV---------TN 473 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~----~~ph---~~~-~v~---------~~ 473 (744)
T Consensus 355 aGe~laIIGPSgSGKStLaR~~vG~--W~~~~G~VRLDGadl~qWD~e~lG~~iGYLPQdvELF~GTva~NIARF~en~d 432 (556)
T TIGR01842 355 AGEALAIIGPSGSGKSTLARILVGI--WPPASGSVRLDGADLKQWDRETLGKHIGYLPQDVELFSGTVAENIARFGENAD 432 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHC--CCCCCCCEEEEHHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
T ss_conf 7745888747865258898788721--01356533640334402375365880154798505076767640244688788
Q ss_pred HHHHHHHHHHH-HHHHHHH----HHHHHHCCCCCH-HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCH
Q ss_conf 17876899999-9866769----999998077867-99999886420267766654323386799984456876753103
Q gi|254780606|r 474 PKKAVMALKWA-VREMEER----YRKMSHLSVRNI-KSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGK 547 (744)
Q Consensus 474 ~~~~~~~l~~~-~~em~~r----~~~~~~~~~~~i-~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~ 547 (744)
T Consensus 433 ~~~iieAAklAGvHElIl~lP~GYDT~iG~~G~~LSGGQRQRIaLARAly---------G~P~l-vvLDEPNsNL---D~ 499 (556)
T TIGR01842 433 PEKIIEAAKLAGVHELILRLPDGYDTDIGEGGATLSGGQRQRIALARALY---------GDPKL-VVLDEPNSNL---DE 499 (556)
T ss_pred HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---------CCCEE-EEECCCCCCC---CH
T ss_conf 78999999760303575169688544313777778614689999999871---------79837-8732889876---61
Q ss_pred HHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 5899999999964201358999851654
Q gi|254780606|r 548 EIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 548 ~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
T Consensus 500 ~GE~AL~~Ai~~lK~rg~tvv~itHRp~ 527 (556)
T TIGR01842 500 EGEQALANAIKALKARGITVVVITHRPS 527 (556)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECHHH
T ss_conf 7899999999999867972899841068