HHsearch alignment for GI: 254780606 and conserved domain: TIGR02198
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I; InterPro: IPR011913 RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (IPR011914 from INTERPRO) adds ADP to yield ADP-D-glycero-D-manno-heptose .; GO: 0016773 phosphotransferase activity alcohol group as acceptor, 0016779 nucleotidyltransferase activity, 0005975 carbohydrate metabolic process.
Probab=92.95 E-value=0.059 Score=32.41 Aligned_cols=147 Identities=25% Similarity=0.365 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHCCCC--EEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCC
Q ss_conf 899999987403551--389867648925899975488863999985999999871477632775189834544268888
Q gi|254780606|r 293 NAGSLETILEEFGIK--GEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLSARVAVIPKRNAIGIELPNET 370 (744)
Q Consensus 293 ~~~~l~~~l~~~~~~--~~~~~~~~gp~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~pg~~~~~~~~p~~~ 370 (744)
T Consensus 75 ~g~~L~~ll~~~g~~~~~~l~~d~~rpT~~K~Rv-----------------~a~~-~QQllR~-------------D~E~ 123 (321)
T TIGR02198 75 AGKALEALLKEEGIDDTSGLIRDKSRPTTTKTRV-----------------LARA-NQQLLRV-------------DFEE 123 (321)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEE-----------------EECC-CEEEEEE-------------EEEC
T ss_conf 8999999997458643300277689894488888-----------------6046-5058997-------------4102
Q ss_pred CCEEE---HHHHHCCHHHCCCCCCEEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEE
Q ss_conf 87076---587512812114678368984205788732112011484699707875344799999999998568011079
Q gi|254780606|r 371 RETVY---LRQIIESRSFSHSKANLALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRM 447 (744)
Q Consensus 371 ~~~v~---~~~~~~~~~~~~~~~~l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~ 447 (744)
T Consensus 124 ~~~~~~~~~~~L~~--~~~~~l~~~d~---------VvLSD--------------YaKGvLt~~v~~~~I~~Ar~~~-~p 177 (321)
T TIGR02198 124 RKPINAEEEARLLA--AIKEQLASADA---------VVLSD--------------YAKGVLTPSVVQEVIAAAREAG-KP 177 (321)
T ss_pred CCCCCHHHHHHHHH--HHHHHHCCCCE---------EEEEE--------------CCCCCCCHHHHHHHHHHHHHCC-CC
T ss_conf 77689778999999--99997232878---------99986--------------6876358578999999999668-91
Q ss_pred EEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHH----HHH--HHHHHH-HHHHHHCCC
Q ss_conf 99723421000125775200004444178768999----999--866769-999998077
Q gi|254780606|r 448 IMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALK----WAV--REMEER-YRKMSHLSV 500 (744)
Q Consensus 448 ~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~----~~~--~em~~r-~~~~~~~~~ 500 (744)
T Consensus 178 VlVDPKg~df~~Y~GAt-l~TP---N~~E~~~avG~~~~~~~~~~~~~~aa~~L~~~~~l 233 (321)
T TIGR02198 178 VLVDPKGKDFSRYRGAT-LITP---NRKEAEAAVGIKFIACENEAELVKAAEKLLEELDL 233 (321)
T ss_pred EEEECCCCCHHHHCCCC-CCCC---CHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 99807876234514664-2366---87999998588701105817899999999997099