HHsearch alignment for GI: 254780606 and conserved domain: TIGR02538
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=93.84 E-value=0.03 Score=34.46 Aligned_cols=99 Identities=32% Similarity=0.476 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHCCCCCE-EE--EECCCCEEEEEC-------------CCCCCCEEEHHHHHCCHHHCCCCCCEEE-EEEE
Q ss_conf 85999999871477632-77--518983454426-------------8888870765875128121146783689-8420
Q gi|254780606|r 336 IGLADDIARSMSSLSAR-VA--VIPKRNAIGIEL-------------PNETRETVYLRQIIESRSFSHSKANLAL-CLGK 398 (744)
Q Consensus 336 ~~~~~d~~~~~~~~~~~-~~--~~pg~~~~~~~~-------------p~~~~~~v~~~~~~~~~~~~~~~~~l~~-~~g~ 398 (744)
T Consensus 237 ~~l~~ri~aRiKvMS~LDIaEkR~PQDGRiKl~~sk~k~iDFRVStLPTLfGEKvVLR-iLDsS~-----a~Ldi~~LGF 310 (577)
T TIGR02538 237 LKLANRIAARIKVMSRLDIAEKRIPQDGRIKLKLSKSKAIDFRVSTLPTLFGEKVVLR-ILDSSA-----AKLDIDKLGF 310 (577)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCEEEEE-EECHHH-----CCCCCHHHCC
T ss_conf 8899999989999732671224568787367753784455125378742024446677-655221-----2267422068
Q ss_pred CCCCCEEECCHHHCC--CEEEEECCCCCHHHHHHHHHHHHHHHCCHH
Q ss_conf 578873211201148--469970787534479999999999856801
Q gi|254780606|r 399 TISGESVIADLANMP--HILVAGTTGSGKSVAINTMIMSLLYRLRPD 443 (744)
Q Consensus 399 ~~~g~~~~~dl~~~P--H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~ 443 (744)
T Consensus 311 eP~Qk~~fL~Ai~kPqGMvLVTGPTGSGKTVSLYTaLni---LN~~~ 354 (577)
T TIGR02538 311 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNI---LNTEE 354 (577)
T ss_pred CHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCC---CCCCC
T ss_conf 888999999997079972886266598416878763112---57767