HHsearch alignment for GI: 254780606 and conserved domain: TIGR02759
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=97.80 E-value=3.3e-05 Score=54.67 Aligned_cols=55 Identities=42% Similarity=0.581 Sum_probs=41.3
Q ss_pred CCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEEC
Q ss_conf 78873211201148469970787534479999999999856801107999723421000
Q gi|254780606|r 400 ISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS 458 (744)
Q Consensus 400 ~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~ 458 (744)
T Consensus 196 i~g~~l~K~~sE~Qh~L~~GTtG~GKs~~lr~LL~~i--R~rGd--~AIiYDkgC~f~~ 250 (613)
T TIGR02759 196 IGGLPLIKKGSEVQHILIHGTTGSGKSVALRKLLRWI--RQRGD--RAIIYDKGCTFVS 250 (613)
T ss_pred ECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHH--HHCCC--EEEEEECCCCCCC
T ss_conf 0780678777742252664541743899999999999--86398--5899825742021