HHsearch alignment for GI: 254780606 and conserved domain: TIGR02782

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=97.53  E-value=0.00012  Score=50.81  Aligned_cols=145  Identities=20%  Similarity=0.287  Sum_probs=75.9

Q ss_pred             HHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCC-------CHHHHHHHHHHHHHHHCCCCC----EE-E--EEC--CCC
Q ss_conf             9998740355138986764892589997548886-------399998599999987147763----27-7--518--983
Q gi|254780606|r  297 LETILEEFGIKGEIINVNPGPVVTLYEFEPAPGI-------KSSRVIGLADDIARSMSSLSA----RV-A--VIP--KRN  360 (744)
Q Consensus       297 l~~~l~~~~~~~~~~~~~~gp~~~~~~~~~~~g~-------~~~~~~~~~~d~~~~~~~~~~----~~-~--~~p--g~~  360 (744)
T Consensus        10 lG~~i~~~LdD~~vvEIMLNpDG~Lwve~Lg~G~~~~G~t~~~~~a~~Ii~~vA~~l~~~V~~~~PivegELPldflGsR   89 (315)
T TIGR02782        10 LGPEIAAALDDPKVVEIMLNPDGKLWVERLGEGMEPLGKTVSPADAERIIGLVADYLGTEVDRDKPIVEGELPLDFLGSR   89 (315)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCEEEECCCCCHHHCC
T ss_conf             89999997379883899866987010500679730016611789999999999876446043578626610751112011


Q ss_pred             EEEEECCCCCCCEEEHHHHHCCHHHCC-CCCCEEEEEEECCCCCEE-------ECCH-HHCCCEEEEECCCCCHHHHHHH
Q ss_conf             454426888887076587512812114-678368984205788732-------1120-1148469970787534479999
Q gi|254780606|r  361 AIGIELPNETRETVYLRQIIESRSFSH-SKANLALCLGKTISGESV-------IADL-ANMPHILVAGTTGSGKSVAINT  431 (744)
Q Consensus       361 ~~~~~~p~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~g~~~~g~~~-------~~dl-~~~PH~lvaG~TgsGKS~~l~~  431 (744)
T Consensus        90 FeGl~PP-----------VV~~p~F~IRkkA~~vfTLDdYV~~gimtaaQ~d~l~~Av~ar~NIlv~GGTGSGKTTLaNA  158 (315)
T TIGR02782        90 FEGLLPP-----------VVEAPSFAIRKKAVRVFTLDDYVEAGIMTAAQRDVLREAVAARKNILVVGGTGSGKTTLANA  158 (315)
T ss_pred             CCCCCCC-----------CCCCCCCHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
T ss_conf             0046877-----------55655101110224104707776404455789999999997129889981458857999999


Q ss_pred             HHHHHHHHCCHHHEEEEEE-CCC
Q ss_conf             9999998568011079997-234
Q gi|254780606|r  432 MIMSLLYRLRPDECRMIMV-DPK  453 (744)
Q Consensus       432 ~i~sl~~~~~p~~~~~~li-D~k  453 (744)
T Consensus       159 lla~I~~l~~P~d-R~vIiEDT~  180 (315)
T TIGR02782       159 LLAEIAKLNDPDD-RVVIIEDTA  180 (315)
T ss_pred             HHHHHHHCCCCCC-EEEEEECCH
T ss_conf             9998852169996-189985471