HHsearch alignment for GI: 254780606 and conserved domain: TIGR02782
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=97.53 E-value=0.00012 Score=50.81 Aligned_cols=145 Identities=20% Similarity=0.287 Sum_probs=75.9
Q ss_pred HHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCC-------CHHHHHHHHHHHHHHHCCCCC----EE-E--EEC--CCC
Q ss_conf 9998740355138986764892589997548886-------399998599999987147763----27-7--518--983
Q gi|254780606|r 297 LETILEEFGIKGEIINVNPGPVVTLYEFEPAPGI-------KSSRVIGLADDIARSMSSLSA----RV-A--VIP--KRN 360 (744)
Q Consensus 297 l~~~l~~~~~~~~~~~~~~gp~~~~~~~~~~~g~-------~~~~~~~~~~d~~~~~~~~~~----~~-~--~~p--g~~ 360 (744)
T Consensus 10 lG~~i~~~LdD~~vvEIMLNpDG~Lwve~Lg~G~~~~G~t~~~~~a~~Ii~~vA~~l~~~V~~~~PivegELPldflGsR 89 (315)
T TIGR02782 10 LGPEIAAALDDPKVVEIMLNPDGKLWVERLGEGMEPLGKTVSPADAERIIGLVADYLGTEVDRDKPIVEGELPLDFLGSR 89 (315)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCEEEECCCCCHHHCC
T ss_conf 89999997379883899866987010500679730016611789999999999876446043578626610751112011
Q ss_pred EEEEECCCCCCCEEEHHHHHCCHHHCC-CCCCEEEEEEECCCCCEE-------ECCH-HHCCCEEEEECCCCCHHHHHHH
Q ss_conf 454426888887076587512812114-678368984205788732-------1120-1148469970787534479999
Q gi|254780606|r 361 AIGIELPNETRETVYLRQIIESRSFSH-SKANLALCLGKTISGESV-------IADL-ANMPHILVAGTTGSGKSVAINT 431 (744)
Q Consensus 361 ~~~~~~p~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~g~~~~g~~~-------~~dl-~~~PH~lvaG~TgsGKS~~l~~ 431 (744)
T Consensus 90 FeGl~PP-----------VV~~p~F~IRkkA~~vfTLDdYV~~gimtaaQ~d~l~~Av~ar~NIlv~GGTGSGKTTLaNA 158 (315)
T TIGR02782 90 FEGLLPP-----------VVEAPSFAIRKKAVRVFTLDDYVEAGIMTAAQRDVLREAVAARKNILVVGGTGSGKTTLANA 158 (315)
T ss_pred CCCCCCC-----------CCCCCCCHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
T ss_conf 0046877-----------55655101110224104707776404455789999999997129889981458857999999
Q ss_pred HHHHHHHHCCHHHEEEEEE-CCC
Q ss_conf 9999998568011079997-234
Q gi|254780606|r 432 MIMSLLYRLRPDECRMIMV-DPK 453 (744)
Q Consensus 432 ~i~sl~~~~~p~~~~~~li-D~k 453 (744)
T Consensus 159 lla~I~~l~~P~d-R~vIiEDT~ 180 (315)
T TIGR02782 159 LLAEIAKLNDPDD-RVVIIEDTA 180 (315)
T ss_pred HHHHHHHCCCCCC-EEEEEECCH
T ss_conf 9998852169996-189985471