HHsearch alignment for GI: 254780606 and conserved domain: TIGR03167
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=91.90 E-value=0.13 Score=30.08 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=19.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 484699707875344799999999
Q gi|254780606|r 412 MPHILVAGTTGSGKSVAINTMIMS 435 (744)
Q Consensus 412 ~PH~lvaG~TgsGKS~~l~~~i~s 435 (744)
T Consensus 127 ~~~~vl~G~TG~GKT~iL~~L~~~ 150 (311)
T TIGR03167 127 FPLIVLGGMTGSGKTELLHALANA 150 (311)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 876998788887789999999976