HHsearch alignment for GI: 254780606 and conserved domain: cd00267
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.94 E-value=0.086 Score=31.28 Aligned_cols=123 Identities=22% Similarity=0.314 Sum_probs=60.5
Q ss_pred CEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC--CCCCEECCCCCCCCEEEEEEECHHHHHHH
Q ss_conf 7321120114846997078753447999999999985680110799972--34210001257752000044441787689
Q gi|254780606|r 403 ESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD--PKMLELSVYDGIPHLLTPVVTNPKKAVMA 480 (744)
Q Consensus 403 ~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD--~k~~~~~~~~~~ph~~~~v~~~~~~~~~~ 480 (744)
T Consensus 16 ~~i~~~i~~Ge~~~i~G~nGaGKSTLl~~-l~gl~---~~~~G~i~~~g~~~~~~~~~~~~~--~-i~-~v~-------- 79 (157)
T cd00267 16 DNVSLTLKAGEIVALVGPNGSGKSTLLRA-IAGLL---KPTSGEILIDGKDIAKLPLEELRR--R-IG-YVP-------- 79 (157)
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCCEEEECCEECCCCCHHHHHH--C-CC-CCC--------
T ss_conf 21178987997999987889998999999-95884---799628999999999799999994--0-60-876--------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHH-HHHHCCHHHHHHHHHHHHH
Q ss_conf 999998667699999980778679999988642026776665432338679998445687-6753103589999999996
Q gi|254780606|r 481 LKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMAD-LMMVAGKEIEGAIQRLAQM 559 (744)
Q Consensus 481 l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~-l~~~~~~~~e~~~~~la~~ 559 (744)
T Consensus 80 --QLSgGqkqrv~iA~al-----------~----------------~~p~-ililDEPtsgLD~~~~~~l~~~i~~l~~~ 129 (157)
T cd00267 80 --QLSGGQRQRVALARAL-----------L----------------LNPD-LLLLDEPTSGLDPASRERLLELLRELAEE 129 (157)
T ss_pred --CCCHHHHHHHHHHHHH-----------H----------------CCCC-EEEEECCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf --6886999999999999-----------7----------------0999-99996987668999999999999999968
Q ss_pred HHCCEEEEEEEECCCC
Q ss_conf 4201358999851654
Q gi|254780606|r 560 ARAAGIHLIMATQRPS 575 (744)
Q Consensus 560 ~ra~GihlilatQrp~ 575 (744)
T Consensus 130 ----g~tii~vtH~~~ 141 (157)
T cd00267 130 ----GRTVIIVTHDPE 141 (157)
T ss_pred ----CCEEEEEECCHH
T ss_conf ----999999908999