HHsearch alignment for GI: 254780606 and conserved domain: cd00561

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=91.22  E-value=1.1  Score=23.64  Aligned_cols=134  Identities=19%  Similarity=0.246  Sum_probs=70.4

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECC-CC----CEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHH
Q ss_conf             69970787534479999999999856801107999723-42----10001257752000044441787689999998667
Q gi|254780606|r  415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDP-KM----LELSVYDGIPHLLTPVVTNPKKAVMALKWAVREME  489 (744)
Q Consensus       415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~-k~----~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~  489 (744)
T Consensus         5 i~vytG~GKGKT----TAAlG~alRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~i~~~~~g~~-~-----~~-~~~~~   73 (159)
T cd00561           5 IQVYTGNGKGKT----TAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRG-F-----FW-TTEND   73 (159)
T ss_pred             EEEEECCCCCHH----HHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEEECCCC-C-----CC-CCCCC
T ss_conf             999957999708----9999999998449998999998158987559999984899689988999-7-----32-27987


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf             69999998077867999998864202677666543233867999844568767531035899999999964201358999
Q gi|254780606|r  490 ERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIM  569 (744)
Q Consensus       490 ~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihlil  569 (744)
T Consensus        74 ~~~~~~a~~------~~~~a~~~l~------------~~~~dlvVLDEi~~a~~~gli~~~~-v~~~l~-~rp~~~evVl  133 (159)
T cd00561          74 EEDIAAAAE------GWAFAKEAIA------------SGEYDLVILDEINYALGYGLLDVEE-VVDLLK-AKPEDLELVL  133 (159)
T ss_pred             HHHHHHHHH------HHHHHHHHHH------------CCCCCEEEEHHHHHHHHCCCCCHHH-HHHHHH-HCCCCCEEEE
T ss_conf             999999999------9999999986------------8898999736689999859917999-999998-4899978999


Q ss_pred             EECCCCCCCC
Q ss_conf             8516544441
Q gi|254780606|r  570 ATQRPSVDVI  579 (744)
Q Consensus       570 atQrp~~~vi  579 (744)
T Consensus       134 TGr~~p~~L~  143 (159)
T cd00561         134 TGRNAPKELI  143 (159)
T ss_pred             ECCCCCHHHH
T ss_conf             6999999999